Citrus Sinensis ID: 024438

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------
Protein Sequence
MYHTQQLQQPPSFTYLSNHPTIPNPNPSSYFSYPQPAVHHAEPAIYPPGIDPDADSGSHPSTHVGIENQIPTQYYVDPNAVSVAWVTWQAGSLTYENGSLPSTSLNSSGDSYATSQPLVNNVTQSIPTQSKVIQPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCNTINKVSLPSQELEMKRQKLLNGGAAVDSVRVCTVCNIACNGQEAFNDHLSGKKHAAQVITLLSSLAFSLIDSHLMLVFLFCFKIALL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccEEEccHHHHHHHHccHHHHHHHHHHHHHccccccccccHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEcccccccccccccEEccccccccccccccccccccccccHccccccEccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEccccHHHHHHHHHcHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHEEEcccccccEEEEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
myhtqqlqqppsftylsnhptipnpnpssyfsypqpavhhaepaiyppgidpdadsgshpsthvgienqiptqyyvdpnaVSVAWVTWQAgsltyengslpstslnssgdsyatsqplvnnvtqsiptqskviqpvrcvvcnidcnskdvfqkhisgkkhlrnlqnqhnpsaatlKRSCntinkvslpsqELEMKRQKLLNGGAAVDSVRVCTVCNIACNGQEAFNDHLSGKKHAAQVITLLSSLAFSLIDSHLMLVFLFCFKIALL
Flexible Loop (DISEMBL)
myhtqqlqqppsfTYLSNHPTIPNPNPSSYFSYPQPAVHHAEPAIYPPGIDPDADSGSHPSTHVGIENQIPTQYYVDPNAVSVAWVTWQAGSLTYENGSLPSTSLNSSGDSYATSQPLVNNVTQSiptqskviqpVRCVVCNIDCNSKDVFQKHISGKKHlrnlqnqhnpsaatlkrscNTINKVSLPSQELEMKRQKLLNGGAAVDSVRVCTVCNIACNGQEAFNDHLSGKKHAAQVITLLSSLAFSLIDSHLMLVFLFCFKIALL
Low Complexity Region (SEG)
MYHTQQLQQPPSFTYLSNHPTIpnpnpssyfsypqpAVHHAEPAIYPPGIDPDADSGSHPSTHVGIENQIPTQYYVDPNAVSVAWVTWQAGSLTYENGSLPSTSLNSSGDSYATSQPLVNNVTQSIPTQSKVIQPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCNTINKVSLPSQELEMKRQKLLNGGAAVDSVRVCTVCNIACNGQEAFNDHLSGKKHAAQVITLLSSLAFSLIDSHLMLVFLFCFKIALL
Disordered region (IsUnstruct)
***************************************************************VGIENQIPTQYYVDPNAVSVAWVTWQAGSLTY******************************IPTQSKVIQPVRCVVCNIDCNSKDVFQKHI*******************************************LLNGGAAVDSVRVCTVCNIACNGQEAFNDHLSGKKHAAQVITLLSSLAFSLIDSHLMLVFLFCFKIAL*
Disordered Region (DISOPRED)
****************************************************************************************************************************************RCVVCNIDCNSKDVFQKHISGKKH*************************************************RVCTVCNIACNGQEAFNDHLSGKK**********************LVFLFCFKIALL
Disordered Region (DISEMBL)
********QPPSFTYLSNHPTIPNPNPSSYFSYPQPAVHHAEPAIYPPGIDPDADSGSHPSTHVGIENQIPTQYYVDPNAVSVAWVTWQAGSLTYENGSLPS**********ATSQPLVNNVTQSIPTQSKVIQPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCNTINKVSLPSQELEMKRQKLLNGGAAVDSVRVCTVCNIACNGQEAFNDHLSGKKHAAQVITLLSSLAFSLIDSHLMLVFLFCFKIALL
Disordered Region (DISPRO)
*****QLQQPPSFTYLSNHPTIPNPNPSSYFSYPQPAVHHAEPAIYPPGIDPDADSGSHPSTHVGIENQIPTQYYVDPNAVSVAWVTWQAGSLTYENGSLPSTSLNSSGDSYATSQPLVNNVTQSIPTQSKVIQPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQH********************SQELEMKRQKLLNGGAAVDSVRVCTVCNIACNGQEAFNDHLSGKKHAAQVITLLSSLAFSLIDSHLMLVFLFCFKIALL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MYHTQQLQQPPSFTYLSNHPTIPNPNPSSYFSYPQPAVHHAEPAIYPPGIDPDADSGSHPSTHVGIENQIPTQYYVDPNAVSVAWVTWQAGSLTYENGSLPSTSLNSSGDSYATSQPLVNNVTQSIPTQSKVIQPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCNTINKVSLPSQELEMKRQKLLNGGAAVDSVRVCTVCNIACNGQEAFNDHLSGKKHAAQVITLLSSLAFSLIDSHLMLVFLFCFKIALL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	267	2.2.26 [Sep-21-2011]
A2RV29	301	Zinc finger protein 346 O	yes	no	0.419	0.372	0.293	8e-06
Q5U231	1065	Zinc finger RNA-binding p	yes	no	0.318	0.079	0.266	0.0006
Q6GPM1	1054	Zinc finger RNA-binding p	N/A	no	0.318	0.080	0.266	0.0006

>sp|A2RV29|ZN346_DANRE Zinc finger protein 346 OS=Danio rerio GN=znf346 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 54/126 (42%), Gaps = 14/126 (11%)

Query: 112 YATSQPLVNNVTQSIPTQSKVIQPVR---CVVCNIDCNSKDVFQKHISGKKHLRNLQNQH 168
           + + +P+      S   QS V +  +   C VCN+  +S  V Q H  GK H +NL+ Q 
Sbjct: 90  HGSEEPIAKRFKPSGDDQSNVDEKDKYKACSVCNMTFSSPVVAQSHYQGKVHSKNLRMQS 149

Query: 169 NPSAATLKRSCNTINKVSLPSQELEMKRQKLLNGGAAVDSVRVCTVCNIACNGQEAFNDH 228
             S              +LP  E + K+   + G A  D  R C++C  + N       H
Sbjct: 150 IGSQTP-----------ALPQPEAQAKKDDGMQGPAEQDPNRFCSICQASFNNPLMAQQH 198

Query: 229 LSGKKH 234
            SGKKH
Sbjct: 199 YSGKKH 204

Binds preferentially to dsRNA, but also to RNA-DNA hybrids.
Danio rerio (taxid: 7955)

>sp|Q5U231|ZFR_XENTR Zinc finger RNA-binding protein OS=Xenopus tropicalis GN=zfr PE=2 SV=1

 Score = 45.1 bits (105), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 24/109 (22%)

Query: 138 CVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCNTINKVSLPSQELEMKRQ 197
           C VC I C     +++H+ G+KH +          A LK S NT +     S  +   + 
Sbjct: 333 CDVCKISCAGPQTYKEHLEGQKHKKK--------EAALKASQNTTSS----STAVRGTQN 380

Query: 198 KLLNGGAAVDSVRVCTVCNIACNGQEAFNDHLSGKKHAAQVITLLSSLA 246
           +L            C +C+++C G +A+  H+ G KH  +V+ L + L 
Sbjct: 381 QLR-----------CELCDVSCTGADAYAAHIRGAKH-QKVVKLHTKLG 417

Involved in postimplantation and gastrulation stages of development. Binds to DNA and RNA.

Xenopus tropicalis (taxid: 8364)

>sp|Q6GPM1|ZFR_XENLA Zinc finger RNA-binding protein OS=Xenopus laevis GN=zfr PE=2 SV=1

 Score = 44.7 bits (104), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 24/109 (22%)

Query: 138 CVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCNTINKVSLPSQELEMKRQ 197
           C VC I C     +++H+ G+KH +          A LK S NT +     S  +   + 
Sbjct: 324 CDVCKISCAGPQTYKEHLEGQKHKKK--------EAALKASQNTTSS----STAVRGTQN 371

Query: 198 KLLNGGAAVDSVRVCTVCNIACNGQEAFNDHLSGKKHAAQVITLLSSLA 246
           +L            C +C+++C G +A+  H+ G KH  +V+ L + L 
Sbjct: 372 QLR-----------CELCDVSCTGADAYAAHIRGAKH-QKVVKLHTKLG 408

Involved in postimplantation and gastrulation stages of development. Binds to DNA and RNA.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	267
225457301	424	PREDICTED: uncharacterized protein LOC10	0.835	0.525	0.445	4e-44
449440826	270	PREDICTED: uncharacterized protein LOC10	0.831	0.822	0.407	1e-38
147853034	1164	hypothetical protein VITISV_035305 [Viti	0.501	0.115	0.496	5e-31
147819292	1073	hypothetical protein VITISV_019273 [Viti	0.779	0.193	0.292	9e-21
359489021	801	PREDICTED: uncharacterized protein LOC10	0.707	0.235	0.293	2e-20
296082991	692	unnamed protein product [Vitis vinifera]	0.722	0.278	0.297	2e-20
224141481	289	predicted protein [Populus trichocarpa]	0.389	0.359	0.4	2e-19
255570252	171	hypothetical protein RCOM_0524640 [Ricin	0.498	0.777	0.356	5e-19
358248544	296	uncharacterized protein LOC100803425 [Gl	0.771	0.695	0.292	1e-17
388521031	532	unknown [Medicago truncatula]	0.404	0.203	0.365	6e-16

>gi|225457301|ref|XP_002281421.1| PREDICTED: uncharacterized protein LOC100251937 [Vitis vinifera] gi|297733915|emb|CBI15162.3| unnamed protein product [Vitis vinifera]

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 119/267 (44%), Positives = 147/267 (55%), Gaps = 44/267 (16%)

Query: 1   MYHTQQLQQPPSFTYL--SNHPTIPNPNPSSYFSYPQPAVHHAEPAIYPPGIDPDADSGS 58
           M+H  +   P +FTYL   +H TIPN +    FS         +P ++P  IDP + S  
Sbjct: 1   MFHPHETSYP-NFTYLPHQSHSTIPNISLGPLFS---------QPVLHPTSIDPYSHSSL 50

Query: 59  HPSTHVGIENQIPTQYYVDPNAVSVAWVTWQAGSLTYENGSLPS-------TSLNSSGDS 111
           +PS HV +  Q     Y DPNAVS  WV   A  +TYE    PS       TSLNS    
Sbjct: 51  YPSIHVVLGGQ--ATRYEDPNAVSQNWVVKNADPITYEPAVKPSNEKAVVSTSLNSL--- 105

Query: 112 YATSQPLVNNVTQSIPTQSKVIQPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNPS 171
           ++ +QPLVN++T  IP Q+KVI  +RC VCNIDCNSKDV +KHISGKKH RNLQ   N  
Sbjct: 106 WSNNQPLVNDMTIRIPEQTKVILSLRCEVCNIDCNSKDVLEKHISGKKHNRNLQIHTNQV 165

Query: 172 AATLK-RSCNTINKVSL-------------------PSQELEMKRQKLLNGGAAVDSVRV 211
           + T+  +    +N  SL                     Q L  KR KL+ GGA  DSVR 
Sbjct: 166 STTISTKDSIGMNTGSLVGQIGSISHQRILGSAGAAAGQSLVAKRLKLVEGGAVADSVRT 225

Query: 212 CTVCNIACNGQEAFNDHLSGKKHAAQV 238
           CT+CN+ACN Q  F  HL+GKKHAAQV
Sbjct: 226 CTICNVACNSQVVFQKHLTGKKHAAQV 252

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440826|ref|XP_004138185.1| PREDICTED: uncharacterized protein LOC101205563 [Cucumis sativus] gi|449530728|ref|XP_004172345.1| PREDICTED: uncharacterized LOC101205563 [Cucumis sativus]

 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 101/248 (40%), Positives = 135/248 (54%), Gaps = 26/248 (10%)

Query: 15  YLSNHPTIPNPNPSSYFSYPQPAVHHA---EPAIYPPGIDPDADSGSHPSTHVGIENQIP 71
           Y   HP I N NPSS+  +PQP +  A   EP ++PPG DP ++S    ST+VG+E Q  
Sbjct: 18  YFPPHPHIVNANPSSFHPFPQPVLPPAVPSEPGLHPPGTDPYSNSTVLTSTYVGLEPQ-- 75

Query: 72  TQYYVDPNAVSVAWVTWQAGSLTYENGSL-----PSTSLNSSGDSYATSQPLVNNVTQSI 126
            Q+Y DP+  S  WV  Q  +  +   SL      STS NS  +    +Q L  N T++ 
Sbjct: 76  PQFYADPSLASHTWVLPQLDAAGFAFKSLLENQIASTSSNSLLNGNWPTQSLAYNATRTK 135

Query: 127 PTQSKVIQPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCNTI---- 182
             ++K  QPVRC VC IDCNSKDVF KH+ G+KH +NL+  ++   ++     NTI    
Sbjct: 136 HVKTKFTQPVRCEVCKIDCNSKDVFDKHVMGRKHKKNLEVPNSSLTSSTPSDGNTIVLNQ 195

Query: 183 ------------NKVSLPSQELEMKRQKLLNGGAAVDSVRVCTVCNIACNGQEAFNDHLS 230
                         V    + L+ K++KL++     D  RVCTVCNI C  QE F+ H S
Sbjct: 196 MGNVSGQVAQVTADVPAARKGLKSKKRKLIDTSMKADCTRVCTVCNIVCTSQEVFDKHTS 255

Query: 231 GKKHAAQV 238
           GKKHAAQV
Sbjct: 256 GKKHAAQV 263

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147853034|emb|CAN78532.1| hypothetical protein VITISV_035305 [Vitis vinifera]

 Score =  140 bits (353), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 78/157 (49%), Positives = 94/157 (59%), Gaps = 23/157 (14%)

Query: 102 STSLNSSGDSYATSQPLVNNVTQSIPTQSKVIQPVRCVVCNIDCNSKDVFQKHISGKKHL 161
           STSLNS    ++ +QPLVN++T  IP Q+KVI  +RC VCNIDCNSKDV +KHISGKKH 
Sbjct: 306 STSLNSL---WSNNQPLVNDMTIRIPEQTKVIXSLRCEVCNIDCNSKDVLEKHISGKKHN 362

Query: 162 RNLQNQHNPSAATLK-RSCNTINKVSL-------------------PSQELEMKRQKLLN 201
           RNLQ   N  + T+  +    +N  SL                     Q L  KR KL+ 
Sbjct: 363 RNLQIHTNQVSTTISTKDSIGMNTGSLVGQIGSXSHQRILGSAGAAAGQSLVAKRLKLVE 422

Query: 202 GGAAVDSVRVCTVCNIACNGQEAFNDHLSGKKHAAQV 238
           GGA  DSVR CT+CN+AC  Q  F  HL+GK HAAQV
Sbjct: 423 GGAVADSVRTCTICNVACXSQVVFQKHLTGKXHAAQV 459

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147819292|emb|CAN68959.1| hypothetical protein VITISV_019273 [Vitis vinifera]

 Score =  106 bits (265), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 119/260 (45%), Gaps = 52/260 (20%)

Query: 26   NPSSYFSYPQPAVHHAEPAIYPPGIDPDADSGSHPSTHVGIENQ---------------- 69
            NP S     +     AE  + PPG+D  A   SHP+T VG E+                 
Sbjct: 806  NPYSVVKSHETYSFGAEHGLRPPGVDSYAYLNSHPATRVGHESTQPVVTYAHYTLGSASS 865

Query: 70   -IPTQYYVDPNAVSVAWVTWQAGSLTYE-------NGS--LPSTSLNSSGDSYATSQPLV 119
             +P+  Y  P+A S     W A  + Y        NG+  L + ++NS   + +T Q   
Sbjct: 866  TMPSDCYQAPSAQS-----WGAKPIGYAVSLAIPPNGTEQLITANVNSILWTTSTVQARS 920

Query: 120  NNVTQSIPTQSKVIQPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSC 179
            +   +    + K+IQ   C VC +DCNS D+  +H  G++H +N++   +  A       
Sbjct: 921  SGTRKKGAKKMKIIQSAYCEVCKVDCNSDDILAQHKLGRRHKKNMEKLKDTVAPVPTVEA 980

Query: 180  NTINKVSLPSQ---------------------ELEMKRQKLLNGGAAVDSVRVCTVCNIA 218
            ++ N V  P +                     +LE KR++++  GAA D+VR C++CN+ 
Sbjct: 981  SSDNPVIGPPENPNKGKAVSGKKTKATAESLEDLETKRRRIVECGAAADAVRTCSICNVV 1040

Query: 219  CNGQEAFNDHLSGKKHAAQV 238
            CN +  FN HL+G+KHAA V
Sbjct: 1041 CNSETVFNYHLAGQKHAAMV 1060

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489021|ref|XP_003633858.1| PREDICTED: uncharacterized protein LOC100262792 [Vitis vinifera]

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 117/249 (46%), Gaps = 60/249 (24%)

Query: 41  AEPAIYPPGIDPDADSGSHPSTHVGIE-----------------NQIPTQYYVDPNAVSV 83
           AE  + PPG+D  A   SHP+T VG E                 + +P+  Y  P+A S 
Sbjct: 549 AEHGLRPPGVDSYAYLNSHPATRVGHEATQPVVTYAHYTLGSASSTMPSDCYQAPSAQS- 607

Query: 84  AWVTWQAGSLTYE-------NGS--LPSTSLNSSGDSYATSQPLVNNVTQSIPTQSKVIQ 134
               W A  + Y        NG+  L + ++NS   + +T Q   +   +    + K+IQ
Sbjct: 608 ----WGAKPIGYAVSLAIPPNGTEQLITANVNSILWTTSTVQARSSGTRKKGAKKMKIIQ 663

Query: 135 PVRCVVCNIDCNSKDVFQKHISGKKHLRNLQ-------------------------NQHN 169
              C VC +DCNS D+  +H  G++H +N++                         N + 
Sbjct: 664 SAYCEVCKVDCNSDDILAQHKLGRRHKKNMEKLKDTVAPVPTVEASSDNPVIGPPENPNK 723

Query: 170 PSAATLKRSCNTINKVSLPSQELEMKRQKLLNGGAAVDSVRVCTVCNIACNGQEAFNDHL 229
             A + K++  T   +    ++LE KR++++  GAA D+VR C++CN+ CN +  FN HL
Sbjct: 724 GKAVSGKKTKATAESL----EDLETKRRRIVECGAAADAVRTCSICNVVCNSETVFNYHL 779

Query: 230 SGKKHAAQV 238
           +G+KHAA V
Sbjct: 780 AGQKHAAMV 788

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082991|emb|CBI22292.3| unnamed protein product [Vitis vinifera]

 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 115/245 (46%), Gaps = 52/245 (21%)

Query: 41  AEPAIYPPGIDPDADSGSHPSTHVGIE-----------------NQIPTQYYVDPNAVSV 83
           AE  + PPG+D  A   SHP+T VG E                 + +P+  Y  P+A S 
Sbjct: 440 AEHGLRPPGVDSYAYLNSHPATRVGHEATQPVVTYAHYTLGSASSTMPSDCYQAPSAQS- 498

Query: 84  AWVTWQAGSLTYE-------NGS--LPSTSLNSSGDSYATSQPLVNNVTQSIPTQSKVIQ 134
               W A  + Y        NG+  L + ++NS   + +T Q   +   +    + K+IQ
Sbjct: 499 ----WGAKPIGYAVSLAIPPNGTEQLITANVNSILWTTSTVQARSSGTRKKGAKKMKIIQ 554

Query: 135 PVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCNTINKVSLPSQ---- 190
              C VC +DCNS D+  +H  G++H +N++   +  A       ++ N V  P +    
Sbjct: 555 SAYCEVCKVDCNSDDILAQHKLGRRHKKNMEKLKDTVAPVPTVEASSDNPVIGPPENPNK 614

Query: 191 -----------------ELEMKRQKLLNGGAAVDSVRVCTVCNIACNGQEAFNDHLSGKK 233
                            +LE KR++++  GAA D+VR C++CN+ CN +  FN HL+G+K
Sbjct: 615 GKAVSGKKTKATAESLEDLETKRRRIVECGAAADAVRTCSICNVVCNSETVFNYHLAGQK 674

Query: 234 HAAQV 238
           HAA V
Sbjct: 675 HAAMV 679

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141481|ref|XP_002324100.1| predicted protein [Populus trichocarpa] gi|222867102|gb|EEF04233.1| predicted protein [Populus trichocarpa]

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/125 (40%), Positives = 69/125 (55%), Gaps = 21/125 (16%)

Query: 138 CVVCNIDCNSKDVFQKHISGKKHLRNLQN---------------------QHNPSAATLK 176
           C VC +DCNSKDV  +H  GKKH +NL+                      Q NPS +   
Sbjct: 156 CEVCKVDCNSKDVLDQHKLGKKHKKNLEKLQAAAAGCSVSAGSNNPVIGPQENPSKSENG 215

Query: 177 RSCNTINKVSLPSQELEMKRQKLLNGGAAVDSVRVCTVCNIACNGQEAFNDHLSGKKHAA 236
               +  K + P ++L+ KR+++L GGAA D+VRVC+ CN+ CN    FN HL+G+KHAA
Sbjct: 216 NGQKSKKKAAEPLEDLDSKRRRILEGGAAADAVRVCSFCNVVCNSDTVFNSHLAGQKHAA 275

Query: 237 QVITL 241
            +  L
Sbjct: 276 MLKKL 280

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570252|ref|XP_002526086.1| hypothetical protein RCOM_0524640 [Ricinus communis] gi|223534583|gb|EEF36280.1| hypothetical protein RCOM_0524640 [Ricinus communis]

 Score =  100 bits (250), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 56/157 (35%), Positives = 82/157 (52%), Gaps = 24/157 (15%)

Query: 104 SLNSSGDSYATS---QPLVNNVTQSIPTQSKVIQPVRCVVCNIDCNSKDVFQKHISGKKH 160
           +L  SG S  T+   Q   N +      + KV+Q   C VC +DCNSK+V  +H  GKKH
Sbjct: 2   ALAQSGTSAWTNFTFQIQGNGILNKRQKKIKVVQSAYCEVCKVDCNSKEVLDQHKLGKKH 61

Query: 161 LRNLQN---------------------QHNPSAATLKRSCNTINKVSLPSQELEMKRQKL 199
            +N++                      Q NP          +  KV++P ++LE KR+K+
Sbjct: 62  KKNVERLQQALVGPSASYGTHNPVIGPQQNPEKHNTGSVQRSKKKVAVPLEDLETKRRKI 121

Query: 200 LNGGAAVDSVRVCTVCNIACNGQEAFNDHLSGKKHAA 236
           + GGAA ++VRVC +CN+ CN    +N HL+G+KHAA
Sbjct: 122 VEGGAAQEAVRVCAICNVVCNSDNVYNYHLAGRKHAA 158

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248544|ref|NP_001240155.1| uncharacterized protein LOC100803425 [Glycine max] gi|255638831|gb|ACU19719.1| unknown [Glycine max]

 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/253 (29%), Positives = 112/253 (44%), Gaps = 47/253 (18%)

Query: 23  PNPNPSSYFSYPQPAV-------------HHAEPA-IYPPGIDPDADSGSHPSTHVGIEN 68
           PNPNPSS      P V             H   P  +Y   +  D  S  +   H  +  
Sbjct: 38  PNPNPSSSLPLNPPGVDPQTPLNPISYAAHEPVPGLVYAQSLVGDDSSSGYCLDHNWVAR 97

Query: 69  QIPTQYYVDPNAVSVAWVTWQAGSLTYENGSLPSTSLNSSGDSYA--TSQPLVNNVTQSI 126
           +   Q+  DP         +  G     NGS      N S   +   T+QP VN   +  
Sbjct: 98  EAVRQFGTDP-------TLYAPGISLPPNGSEQLAMANPSSLWWTNTTTQPHVNGTPKKN 150

Query: 127 PTQSKVIQPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQN--------QHNPSAAT---- 174
             ++KV+QP  C VC I+C  K+V  +H  GKKH +N++         Q  PS ++    
Sbjct: 151 QKKTKVVQPAFCEVCKIECTGKEVLDQHKLGKKHKKNVEKLRESLTPTQVQPSGSSKPLI 210

Query: 175 -----------LKRSCNTINKVSLPSQELEMKRQKLLNGGAAVDSVRVCTVCNIACNGQE 223
                      +  + +   KV   +++LE K+ K+L GGAA  +V++C +CN+ CN + 
Sbjct: 211 GPQLPDDKGKSISGNKSKRKKVET-AEDLEKKKMKVLMGGAAASAVKICAICNVVCNSET 269

Query: 224 AFNDHLSGKKHAA 236
            +N HL+G+KHAA
Sbjct: 270 VYNYHLAGQKHAA 282

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388521031|gb|AFK48577.1| unknown [Medicago truncatula]

 Score = 90.9 bits (224), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 66/126 (52%), Gaps = 18/126 (14%)

Query: 131 KVIQPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAAT---------------- 174
           KV + V C  C I+CNS+D +  HISGKKHLRNL+   NP                    
Sbjct: 399 KVAESVWCEFCKINCNSRDSYTAHISGKKHLRNLEKLSNPKVGVGSGATPTTTAAITIIE 458

Query: 175 --LKRSCNTINKVSLPSQELEMKRQKLLNGGAAVDSVRVCTVCNIACNGQEAFNDHLSGK 232
              K   + +    +P  ++E +++K +  GAAV+ +++CT+CN+ CN Q   N HLS  
Sbjct: 459 TQEKPDSDNLKAKQVPELDIEAEKRKAVERGAAVNDIKMCTLCNVVCNSQANLNTHLSDH 518

Query: 233 KHAAQV 238
            HAA V
Sbjct: 519 NHAAMV 524

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	267
UNIPROTKB|E1C2G8	289	ZMAT3 "Uncharacterized protein	0.509	0.470	0.237	1.6e-05
ZFIN|ZDB-GENE-070209-152	301	znf346 "zinc finger protein 34	0.419	0.372	0.285	1.8e-05
UNIPROTKB|Q0IIC4	289	ZMAT3 "Zinc finger matrin-type	0.453	0.418	0.248	3.6e-05
UNIPROTKB|E2R5Y8	289	ZMAT3 "Uncharacterized protein	0.441	0.408	0.245	0.00014
UNIPROTKB|Q8AVN9	524	znf346 "Zinc finger protein 34	0.235	0.120	0.328	0.00022
ZFIN|ZDB-GENE-091204-66	460	si:dkey-26l17.1 "si:dkey-26l17	0.464	0.269	0.272	0.00042
UNIPROTKB|Q9HA38	289	ZMAT3 "Zinc finger matrin-type	0.441	0.408	0.237	0.00054
ZFIN|ZDB-GENE-070705-184	1011	zfr2 "zinc finger RNA binding	0.220	0.058	0.283	0.00085

UNIPROTKB|E1C2G8 ZMAT3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 124 (48.7 bits), Expect = 1.6e-05, P = 1.6e-05
 Identities = 34/143 (23%), Positives = 60/143 (41%)

Query:   101 PSTSLNSSGDSYATSQPLVNNVTQSIPTQSKVIQPVRCVVCNIDCNSKDVFQKHISGKKH 160
             P  SL      Y      +  V +  P   ++ +P+ C +CN+  NS    Q H  GK H
Sbjct:    35 PPKSLGLGPSFYHAQDEELAKVVEQDPMLEELCKPLCCKLCNVTLNSAQQAQAHYQGKNH 94

Query:   161 LRNLQNQHNPSAATLK-RSCNTINKVSLPSQELEMKRQKLLN--GGAAVDSVR--VCTVC 215
              + L+N +  ++     R  N++  V  P Q + +  Q   +  GG  + +     C +C
Sbjct:    95 SKKLRNYYAANSCPAPTRMSNSVEPV--PPQVVSLPAQMGSSKPGGRVILATENDYCKLC 152

Query:   216 NIACNGQEAFNDHLSGKKHAAQV 238
             + + +       H  GK HA ++
Sbjct:   153 DASFSSPAVAQAHYQGKNHAKRL 175

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-070209-152 znf346 "zinc finger protein 346" [Danio rerio (taxid:7955)]

 Score = 124 (48.7 bits), Expect = 1.8e-05, P = 1.8e-05
 Identities = 36/126 (28%), Positives = 54/126 (42%)

Query:   112 YATSQPLVNNVTQSIPTQSKVIQPVR---CVVCNIDCNSKDVFQKHISGKKHLRNLQNQH 168
             + + +P+      S   QS V +  +   C VCN+  +S  V Q H  GK H +NL+ Q 
Sbjct:    90 HGSEEPIAKRFKPSGDDQSNVDEKDKYKACSVCNMTFSSPVVAQSHYQGKVHSKNLRMQS 149

Query:   169 NPSAATLKRSCNTINKVSLPSQELEMKRQKLLNGGAAVDSVRVCTVCNIACNGQEAFNDH 228
               S              +LP  + + K+   + G A  D  R C++C  + N       H
Sbjct:   150 IGSQTP-----------ALPQPKAQAKKDDGMQGPAEQDPNRFCSICQASFNNPLMAQQH 198

Query:   229 LSGKKH 234
              SGKKH
Sbjct:   199 YSGKKH 204

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003725 "double-stranded RNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|Q0IIC4 ZMAT3 "Zinc finger matrin-type protein 3" [Bos taurus (taxid:9913)]

 Score = 121 (47.7 bits), Expect = 3.6e-05, P = 3.6e-05
 Identities = 31/125 (24%), Positives = 55/125 (44%)

Query:   131 KVIQPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNP-SAATLKRSCNTINKVSLPS 189
             ++ +P+ C +CN+  NS    Q H  GK H + L+N +   S     R  N +  V+ P+
Sbjct:    65 ELCKPLYCKLCNVTLNSAQQAQAHYQGKNHGKKLRNYYAANSCPPPARMSNAVEAVAAPA 124

Query:   190 QELEMKRQKLLNGGAAVDSVR--VCTVCNIACNGQEAFNDHLSGKKHAAQVITLLSSLAF 247
               +  +      GG  + +     C +C+ + +       H  GK HA + + L  + + 
Sbjct:   125 VSVPPQMGSFKPGGRVILATENDYCKLCDASFSSPAVAQAHYQGKNHAKR-LRLAEAQSN 183

Query:   248 SLIDS 252
             S  DS
Sbjct:   184 SFSDS 188

GO:0005730 "nucleolus" evidence=IEA

GO:0040008 "regulation of growth" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E2R5Y8 ZMAT3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 116 (45.9 bits), Expect = 0.00014, P = 0.00014
 Identities = 30/122 (24%), Positives = 54/122 (44%)

Query:   131 KVIQPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNP-SAATLKRSCNTINKVSLPS 189
             ++ +P+ C +CN+  NS    Q H  GK H + L+N +   S     R  N +  V+ P+
Sbjct:    65 ELCKPLYCKLCNVTLNSAQQAQAHYQGKNHGKKLRNYYAANSCPPPARMSNVVEPVAPPA 124

Query:   190 QELEMKRQKLLNGGAAVDSVR--VCTVCNIACNGQEAFNDHLSGKKHAAQV-ITLLSSLA 246
               +  +      GG  + +     C +C+ + +       H  GK HA ++ +    S +
Sbjct:   125 VPVAPQMGSFKPGGRVILATENDYCKLCDASFSSPAVAQAHYQGKNHAKRLRLAEAQSNS 184

Query:   247 FS 248
             FS
Sbjct:   185 FS 186

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q8AVN9 znf346 "Zinc finger protein 346" [Xenopus laevis (taxid:8355)]

 Score = 87 (35.7 bits), Expect = 0.00022, Sum P(2) = 0.00022
 Identities = 21/64 (32%), Positives = 31/64 (48%)

Query:   103 TSLNSSGDSYATSQPLVNNVTQSIPTQSKVIQPVRCVVCNIDCNSKDVFQKHISGKKHLR 162
             T   SSG + A + P+  N+   +P      +   C  CNI  NS + +Q H+SG KH  
Sbjct:   197 TIYTSSGQTPAQA-PIPLNLNSPMPGSGSAGKGFSCDKCNIVLNSIEQYQAHVSGAKHKN 255

Query:   163 NLQN 166
              L +
Sbjct:   256 QLMS 259

GO:0003725 "double-stranded RNA binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-091204-66 si:dkey-26l17.1 "si:dkey-26l17.1" [Danio rerio (taxid:7955)]

 Score = 115 (45.5 bits), Expect = 0.00042, P = 0.00042
 Identities = 37/136 (27%), Positives = 56/136 (41%)

Query:   101 PSTSLNSSGDSYATSQ--PLVNNVTQSIPTQSKVIQPVRCVVCNIDCNSKDVFQKHISGK 158
             P   L  SGD+    Q  P  +   +  P +SK  Q + C +C +  NS    + H SG 
Sbjct:   203 PDALLEPSGDTSPPPQDSPAADTPAEKEPKKSK--QHLHCPICKVTVNSSIQMEAHNSGT 260

Query:   159 KHLRNLQNQHNPSAATLKRSCNTINKVSLPSQELEMKRQKLLNGGAAVDSVRVCTVCNIA 218
             KH   +  Q   S    +R     ++ S  S+ L  K       G A  S   C VC I 
Sbjct:   261 KHKLMMDGQ---SVLPRRRGKAMSSRPSCKSKRLASKGSL----GVASKSF-YCEVCEIH 312

Query:   219 CNGQEAFNDHLSGKKH 234
              N +   + H++ ++H
Sbjct:   313 VNSETQLSQHMNSRRH 328

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q9HA38 ZMAT3 "Zinc finger matrin-type protein 3" [Homo sapiens (taxid:9606)]

 Score = 111 (44.1 bits), Expect = 0.00054, P = 0.00054
 Identities = 29/122 (23%), Positives = 52/122 (42%)

Query:   131 KVIQPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNP-SAATLKRSCNTINKVSLPS 189
             ++ +P+ C +CN+  NS    Q H  GK H + L+N +   S     R  N +   + P 
Sbjct:    65 ELCKPLYCKLCNVTLNSAQQAQAHYQGKNHGKKLRNYYAANSCPPPARMSNVVEPAATPV 124

Query:   190 QELEMKRQKLLNGGAAVDSVR--VCTVCNIACNGQEAFNDHLSGKKHAAQV-ITLLSSLA 246
               +  +      GG  + +     C +C+ + +       H  GK HA ++ +    S +
Sbjct:   125 VPVPPQMGSFKPGGRVILATENDYCKLCDASFSSPAVAQAHYQGKNHAKRLRLAEAQSNS 184

Query:   247 FS 248
             FS
Sbjct:   185 FS 186

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0040008 "regulation of growth" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

ZFIN|ZDB-GENE-070705-184 zfr2 "zinc finger RNA binding protein 2" [Danio rerio (taxid:7955)]

 Score = 83 (34.3 bits), Expect = 0.00085, Sum P(2) = 0.00085
 Identities = 17/60 (28%), Positives = 33/60 (55%)

Query:   198 KLLNGGAAVDSVRVCTVCNIACNGQEAFNDHLSGKKHAAQVITLLSSLAFSLIDSHLMLV 257
             ++ NG   V +   C +C+++C G +A+  H+ G KH  +V+ L + L   +  +  +LV
Sbjct:   356 QVTNGPRGVQTQLRCELCDVSCTGADAYAAHIRGSKHQ-KVVKLHTKLGKPIPSTEPVLV 414

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00016268001 SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (304 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	267
pfam12874	25	pfam12874, zf-met, Zinc-finger of C2H2 type	4e-05
pfam12874	25	pfam12874, zf-met, Zinc-finger of C2H2 type	6e-05
pfam12171	27	pfam12171, zf-C2H2_jaz, Zinc-finger double-strande	7e-04
smart00451	35	smart00451, ZnF_U1, U1-like zinc finger	0.001
smart00451	35	smart00451, ZnF_U1, U1-like zinc finger	0.004

>gnl|CDD|205121 pfam12874, zf-met, Zinc-finger of C2H2 type

 Score = 39.4 bits (93), Expect = 4e-05
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 212 CTVCNIACNGQEAFNDHLSGKKH 234
           C +CN+    +     HL GKKH
Sbjct: 3   CELCNVTFTSESQLKSHLRGKKH 25

This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding. Length = 25

>gnl|CDD|205121 pfam12874, zf-met, Zinc-finger of C2H2 type

 Score = 39.0 bits (92), Expect = 6e-05
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 137 RCVVCNIDCNSKDVFQKHISGKKH 160
            C +CN+   S+   + H+ GKKH
Sbjct: 2   YCELCNVTFTSESQLKSHLRGKKH 25

This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding. Length = 25

>gnl|CDD|204841 pfam12171, zf-C2H2_jaz, Zinc-finger double-stranded RNA-binding

 Score = 36.0 bits (84), Expect = 7e-04
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 138 CVVCNIDCNSKDVFQKHISGKKH 160
           CV C+    S++  + H+  KKH
Sbjct: 4   CVACDKYFKSENALENHLKSKKH 26

This domain family is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. Length = 27

>gnl|CDD|197732 smart00451, ZnF_U1, U1-like zinc finger

 Score = 35.3 bits (82), Expect = 0.001
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 138 CVVCNIDCNSKDVFQKHISGKKHLRNLQ 165
           C +CN+    +   + H+ GKKH +N++
Sbjct: 6   CKLCNVTFTDEISVEAHLKGKKHKKNVK 33

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins. Length = 35

>gnl|CDD|197732 smart00451, ZnF_U1, U1-like zinc finger

 Score = 34.2 bits (79), Expect = 0.004
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 212 CTVCNIACNGQEAFNDHLSGKKHAAQV 238
           C +CN+    + +   HL GKKH   V
Sbjct: 6   CKLCNVTFTDEISVEAHLKGKKHKKNV 32

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins. Length = 35

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	267
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	98.69
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	98.64
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	98.55
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	98.48
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	98.48
KOG2785	390	consensus C2H2-type Zn-finger protein [General fun	98.44
KOG3792	816	consensus Transcription factor NFAT, subunit NF90	98.33
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	98.12
PF06220	38	zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc fi	97.74
KOG3408	129	consensus U1-like Zn-finger-containing protein, pr	97.68
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.68
KOG4727	193	consensus U1-like Zn-finger protein [General funct	97.55
PF06220	38	zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc fi	97.46
KOG4727	193	consensus U1-like Zn-finger protein [General funct	97.06
PF14968	336	CCDC84: Coiled coil protein 84	97.03
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	96.93
KOG3454	165	consensus U1 snRNP-specific protein C [RNA process	96.49
PLN02748	468	tRNA dimethylallyltransferase	96.41
KOG3792	816	consensus Transcription factor NFAT, subunit NF90	96.14
COG5188	470	PRP9 Splicing factor 3a, subunit 3 [RNA processing	95.61
smart00586	49	ZnF_DBF Zinc finger in DBF-like proteins.	95.11
PF04988	165	AKAP95: A-kinase anchoring protein 95 (AKAP95); In	95.08
smart00586	49	ZnF_DBF Zinc finger in DBF-like proteins.	95.02
KOG0150	336	consensus Spliceosomal protein FBP21 [RNA processi	94.92
PF07535	49	zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc	94.86
PLN02748	468	tRNA dimethylallyltransferase	94.83
COG5112	126	UFD2 U1-like Zn-finger-containing protein [General	94.68
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	94.66
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	94.65
KOG3408	129	consensus U1-like Zn-finger-containing protein, pr	94.61
KOG0227	222	consensus Splicing factor 3a, subunit 2 [RNA proce	94.53
PF07535	49	zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc	94.43
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	94.41
PTZ00448	373	hypothetical protein; Provisional	94.17
KOG3576	267	consensus Ovo and related transcription factors [T	93.87
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	93.83
COG5188	470	PRP9 Splicing factor 3a, subunit 3 [RNA processing	93.48
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	93.48
KOG0227	222	consensus Splicing factor 3a, subunit 2 [RNA proce	92.96
KOG3454	165	consensus U1 snRNP-specific protein C [RNA process	92.86
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	92.86
KOG3032	264	consensus Uncharacterized conserved protein [Funct	92.83
KOG1146	1406	consensus Homeobox protein [General function predi	92.61
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	92.56
KOG0150	336	consensus Spliceosomal protein FBP21 [RNA processi	92.54
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	91.95
COG5246	222	PRP11 Splicing factor 3a, subunit 2 [RNA processin	91.64
smart00355	26	ZnF_C2H2 zinc finger.	91.56
KOG4722	672	consensus Zn-finger protein [General function pred	90.82
COG5246	222	PRP11 Splicing factor 3a, subunit 2 [RNA processin	90.26
KOG3576	267	consensus Ovo and related transcription factors [T	90.06
PTZ00448	373	hypothetical protein; Provisional	89.63
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	88.76
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	88.47
KOG1146	1406	consensus Homeobox protein [General function predi	87.28
COG5136	188	U1 snRNP-specific protein C [RNA processing and mo	87.0
PF11931	196	DUF3449: Domain of unknown function (DUF3449); Int	86.74
KOG3608	467	consensus Zn finger proteins [General function pre	86.73
smart00355	26	ZnF_C2H2 zinc finger.	86.27
KOG3032	264	consensus Uncharacterized conserved protein [Funct	86.13
KOG2837	309	consensus Protein containing a U1-type Zn-finger a	85.87
COG5112	126	UFD2 U1-like Zn-finger-containing protein [General	85.17
KOG4722	672	consensus Zn-finger protein [General function pred	84.9
PHA00732	79	hypothetical protein	84.14
KOG2505	591	consensus Ankyrin repeat protein [General function	84.01
PHA00733	128	hypothetical protein	83.93
PF04988	165	AKAP95: A-kinase anchoring protein 95 (AKAP95); In	83.13
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	81.48
KOG3993	500	consensus Transcription factor (contains Zn finger	81.33
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	80.59
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	80.26

>smart00451 ZnF_U1 U1-like zinc finger

Probab=98.69  E-value=1e-08  Score=65.95  Aligned_cols=32  Identities=31%  Similarity=0.582  Sum_probs=30.5

Q ss_pred             ccccccceeeeCCHHHHHHhhcchhHHHHHHH
Q 024438          209 VRVCTVCNIACNGQEAFNDHLSGKKHAAQVIT  240 (267)
Q Consensus       209 ~~~C~lCnVscnSe~~~~sHL~GKKHkkkvkk  240 (267)
                      .++|++|++.|++...+.+|++|++|++++++
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~gk~H~~~~~~   34 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKGKKHKKNVKK   34 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHChHHHHHHHHc
Confidence            58999999999999999999999999999875

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=98.64  E-value=1.7e-08  Score=60.56  Aligned_cols=25  Identities=32%  Similarity=0.728  Sum_probs=24.3

Q ss_pred             cccccceeeeCCHHHHHHhhcchhH
Q 024438          210 RVCTVCNIACNGQEAFNDHLSGKKH  234 (267)
Q Consensus       210 ~~C~lCnVscnSe~~~~sHL~GKKH  234 (267)
                      |+|++|++.|+++.+|++|++|+||
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~~H   25 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSKKH   25 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTHHH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcCCC
Confidence            6899999999999999999999999

>smart00451 ZnF_U1 U1-like zinc finger

Probab=98.55  E-value=4.7e-08  Score=62.79  Aligned_cols=33  Identities=27%  Similarity=0.608  Sum_probs=30.8

Q ss_pred             CCcccccceeeeCCHHHHHHHhCCchhHHHHHh
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQN  166 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~GKKHqknlk~  166 (267)
                      ..++|++|++.|++...+++|+.|++|++++++
T Consensus         2 ~~~~C~~C~~~~~~~~~~~~H~~gk~H~~~~~~   34 (35)
T smart00451        2 GGFYCKLCNVTFTDEISVEAHLKGKKHKKNVKK   34 (35)
T ss_pred             cCeEccccCCccCCHHHHHHHHChHHHHHHHHc
Confidence            358999999999999999999999999999875

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=98.48  E-value=7e-08  Score=59.42  Aligned_cols=26  Identities=23%  Similarity=0.572  Sum_probs=25.4

Q ss_pred             cccccceeeeCCHHHHHHhhcchhHH
Q 024438          210 RVCTVCNIACNGQEAFNDHLSGKKHA  235 (267)
Q Consensus       210 ~~C~lCnVscnSe~~~~sHL~GKKHk  235 (267)
                      |+|.+|++.|+++.+|++|++|++|+
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~sk~Hk   27 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKSKKHK   27 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTSHHHH
T ss_pred             CCcccCCCCcCCHHHHHHHHccCCCC
Confidence            89999999999999999999999997

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=98.48  E-value=8.4e-08  Score=57.51  Aligned_cols=25  Identities=32%  Similarity=0.731  Sum_probs=24.4

Q ss_pred             cccccceeeeCCHHHHHHHhCCchh
Q 024438          136 VRCVVCNIDCNSKDVFQKHISGKKH  160 (267)
Q Consensus       136 ~~C~LCnVsctS~~~l~sH~~GKKH  160 (267)
                      |+|+||++.|+++..|++|+.|++|
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~~H   25 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSKKH   25 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTHHH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcCCC
Confidence            6899999999999999999999998

>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]

Probab=98.44  E-value=1.6e-07  Score=90.16  Aligned_cols=97  Identities=22%  Similarity=0.340  Sum_probs=70.5

Q ss_pred             CCcccccceeeeCCHHHHHHHhCCchhHHHHHhhcCCCccccccccccCCCCCCChhHHHHHHHh----hhcCCCccccc
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCNTINKVSLPSQELEMKRQK----LLNGGAAVDSV  209 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~~~~~~~~k~s~Nt~G~~~aP~ed~evkkqk----lle~~~~~~~~  209 (267)
                      ..+.|.-|+|.|.+....+.||...+|+.||++......+..             .+.+..+-..    ..+........
T Consensus         2 t~ftC~tC~v~F~~ad~Qr~HyKSdWHRYNLKRkVA~lPPIt-------------aE~F~~k~~s~~~~~~~~~e~~~~~   68 (390)
T KOG2785|consen    2 TGFTCNTCNVEFDDADEQRAHYKSDWHRYNLKRKVASLPPIT-------------AEEFNEKVLSDDSEKEENLEEAESV   68 (390)
T ss_pred             CcceeeceeeeeccHHHHHHHhhhhHHHhhHHhHhhcCCCcC-------------HHHHhHHHhhhhhhhhhhhhhcccc
Confidence            357899999999999999999999999999999765532210             1111110000    00000122457


Q ss_pred             cccccceeeeCCHHHHHHhhcchhHHHHHHHHhh
Q 024438          210 RVCTVCNIACNGQEAFNDHLSGKKHAAQVITLLS  243 (267)
Q Consensus       210 ~~C~lCnVscnSe~~~~sHL~GKKHkkkvkkl~~  243 (267)
                      ++|.+|+..|-|+..+.+||++|+|+.++.+...
T Consensus        69 ~~c~~c~k~~~s~~a~~~hl~Sk~h~~~~~~~~r  102 (390)
T KOG2785|consen   69 VYCEACNKSFASPKAHENHLKSKKHVENLSNHQR  102 (390)
T ss_pred             eehHHhhccccChhhHHHHHHHhhcchhhhhhhc
Confidence            9999999999999999999999999999997653

>KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only]

Probab=98.33  E-value=2.1e-07  Score=94.99  Aligned_cols=157  Identities=23%  Similarity=0.371  Sum_probs=101.2

Q ss_pred             ecccCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCcCCCCCCccccCCCCCCcccccCCCcchhhhhhhhcCCcc
Q 024438           15 YLSNHPTIPNPNPSSYFSYPQPAVHHAEPAIYPPGIDPDADSGSHPSTHVGIENQIPTQYYVDPNAVSVAWVTWQAGSLT   94 (267)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~a~~~~~~~~~~   94 (267)
                      |.-|-|+-.-+-..+|..|+| +|+.|++.|+++-         ||    +++.|-       |.-..++|-   ..   
T Consensus       115 ~~~nlp~q~a~~~~~~y~~d~-sV~~AA~~~~~~~---------ep----~~~lqs-------P~~r~e~~~---~~---  167 (816)
T KOG3792|consen  115 VADNLPIQLAPATPNYYGYDQ-SVYNAASMIVNTK---------EP----GIPLQS-------PNGRAENEK---QR---  167 (816)
T ss_pred             cCCCCcccccccCCcccchhH-Hhhhhhhhhcccc---------CC----CCcCCC-------CCCccchhc---cc---
Confidence            344555555566788999998 9999999988753         23    222222       221111221   11   


Q ss_pred             cCCCccccccccCCCCCCcccCccCCCccccCCC-CCCCCCCcccccceeeeCCHHHHHHHhCCchhHHHHHhhcCCCcc
Q 024438           95 YENGSLPSTSLNSSGDSYATSQPLVNNVTQSIPT-QSKVIQPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAA  173 (267)
Q Consensus        95 ~~~~~~~~~~~~s~~~~~st~~p~~~~~~~~~Pk-~pK~~~~~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~~~~~~  173 (267)
                          .+-.+|...           +.++ -..|| .+...+..+|++|++.|++.+....|+.|.||+++--  .     
T Consensus       168 ----~~~a~s~~d-----------ppd~-ldR~K~~~~laqL~~~kw~k~~a~G~qs~re~lr~~r~l~krv--p-----  224 (816)
T KOG3792|consen  168 ----KMEATSVKD-----------PPDV-LDRPKAPPRLAQLHYCKWCKISAAGPQTYREHLRGQKHLKKEV--P-----  224 (816)
T ss_pred             ----CccccCCCC-----------chhh-cccccCchHHHHhhhhHHHHHhccccHHHHHHHHHHHHHHhcc--C-----
Confidence                222222211           1111 23344 3777889999999999999999999999999988731  0     


Q ss_pred             ccccccccCCCCCCChhHHHHHHHhhhcCCCccccccccccceeeeCCHHHHHHhhcchhHHHHHH---HHhhhcC
Q 024438          174 TLKRSCNTINKVSLPSQELEMKRQKLLNGGAAVDSVRVCTVCNIACNGQEAFNDHLSGKKHAAQVI---TLLSSLA  246 (267)
Q Consensus       174 ~~k~s~Nt~G~~~aP~ed~evkkqklle~~~~~~~~~~C~lCnVscnSe~~~~sHL~GKKHkkkvk---kl~~~~~  246 (267)
                           .|  |+.                  ..-...+.|+.|.++||+...+-.||++.+|.+..+   +++..+.
T Consensus       225 -----t~--~~~------------------kgw~~el~cEksi~tcs~pd~~g~alRrv~ec~~skL~~k~G~gi~  275 (816)
T KOG3792|consen  225 -----TN--GPL------------------KGWPLELHCEKSIVTCSGPDAYGAALRRVKECKVSKLHKKLGKGIP  275 (816)
T ss_pred             -----CC--CCc------------------ccchHHHHHHHhhccccCccchHHHHHHHHHhhhhcccccCCCCCC
Confidence                 11  110                  000125889999999999999999999999999877   4444443

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=98.12  E-value=1.1e-06  Score=53.97  Aligned_cols=27  Identities=26%  Similarity=0.545  Sum_probs=25.3

Q ss_pred             CcccccceeeeCCHHHHHHHhCCchhH
Q 024438          135 PVRCVVCNIDCNSKDVFQKHISGKKHL  161 (267)
Q Consensus       135 ~~~C~LCnVsctS~~~l~sH~~GKKHq  161 (267)
                      .|+|.+|+..|+++.++++|+.|++|+
T Consensus         1 q~~C~~C~k~f~~~~~~~~H~~sk~Hk   27 (27)
T PF12171_consen    1 QFYCDACDKYFSSENQLKQHMKSKKHK   27 (27)
T ss_dssp             -CBBTTTTBBBSSHHHHHCCTTSHHHH
T ss_pred             CCCcccCCCCcCCHHHHHHHHccCCCC
Confidence            389999999999999999999999996

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.74  E-value=2.8e-05  Score=52.13  Aligned_cols=33  Identities=21%  Similarity=0.294  Sum_probs=21.3

Q ss_pred             ccccccceeee--CCHHHHHHhhcchhHHHHHHHH
Q 024438          209 VRVCTVCNIAC--NGQEAFNDHLSGKKHAAQVITL  241 (267)
Q Consensus       209 ~~~C~lCnVsc--nSe~~~~sHL~GKKHkkkvkkl  241 (267)
                      .+||+.|++.+  ++...-+.|.+|+||++++++.
T Consensus         3 ryyCdyC~~~~~~d~~~~Rk~H~~G~kH~~nv~~~   37 (38)
T PF06220_consen    3 RYYCDYCKKYLTHDSPSIRKQHERGWKHKENVKRY   37 (38)
T ss_dssp             S-B-TTT--B-S--SHHHHHHHT--THHHHHHHHH
T ss_pred             CeecccccceecCCChHHHHHhhccHHHHHHHHHh
Confidence            69999999999  5556779999999999999863

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.

>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]

Probab=97.68  E-value=2.1e-05  Score=65.21  Aligned_cols=45  Identities=20%  Similarity=0.299  Sum_probs=39.6

Q ss_pred             ccccccccceeeeCCHHHHHHhhcchhHHHHHHHHhhhcCCCCCCC
Q 024438          207 DSVRVCTVCNIACNGQEAFNDHLSGKKHAAQVITLLSSLAFSLIDS  252 (267)
Q Consensus       207 ~~~~~C~lCnVscnSe~~~~sHL~GKKHkkkvkkl~~~~~~s~~~~  252 (267)
                      ...|||-.|...|-++.+|..|++||.|+++||++. +.++|+.+.
T Consensus        55 ~GqfyCi~CaRyFi~~~~l~~H~ktK~HKrRvK~l~-~~PySQeeA   99 (129)
T KOG3408|consen   55 GGQFYCIECARYFIDAKALKTHFKTKVHKRRVKELR-EVPYSQEEA   99 (129)
T ss_pred             CceeehhhhhhhhcchHHHHHHHhccHHHHHHHhcc-cCCccHHHH
Confidence            458999999999999999999999999999999987 566676653

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.68  E-value=1.1e-05  Score=61.48  Aligned_cols=79  Identities=25%  Similarity=0.449  Sum_probs=26.9

Q ss_pred             cccceeeeCCHHHHHHHhCCchhHHHHHhhcCCCccccccccccCCCCCCChhHHHHHHHhhhcCCCcccccccccccee
Q 024438          138 CVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCNTINKVSLPSQELEMKRQKLLNGGAAVDSVRVCTVCNI  217 (267)
Q Consensus       138 C~LCnVsctS~~~l~sH~~GKKHqknlk~l~~~~~~~~k~s~Nt~G~~~aP~ed~evkkqklle~~~~~~~~~~C~lCnV  217 (267)
                      |.+|+..|++...+..|+. +.|.-.+.....-..        ..+ .      .+....       .....+.|.+|+.
T Consensus         2 C~~C~~~f~~~~~l~~H~~-~~H~~~~~~~~~l~~--------~~~-~------~~~~~~-------~~~~~~~C~~C~~   58 (100)
T PF12756_consen    2 CLFCDESFSSVDDLLQHMK-KKHGFDIPDQKYLVD--------PNR-L------LNYLRK-------KVKESFRCPYCNK   58 (100)
T ss_dssp             ----------------------------------------------------------------------SSEEBSSSS-
T ss_pred             ccccccccccccccccccc-ccccccccccccccc--------ccc-c------cccccc-------ccCCCCCCCccCC
Confidence            9999999999999999994 777766552111100        000 0      000000       1122599999999


Q ss_pred             eeCCHHHHHHhhcchhHHHHHH
Q 024438          218 ACNGQEAFNDHLSGKKHAAQVI  239 (267)
Q Consensus       218 scnSe~~~~sHL~GKKHkkkvk  239 (267)
                      .|.+...+..||+++.|++...
T Consensus        59 ~f~s~~~l~~Hm~~~~H~~~~~   80 (100)
T PF12756_consen   59 TFRSREALQEHMRSKHHKKRNS   80 (100)
T ss_dssp             EESSHHHHHHHHHHTTTTC-S-
T ss_pred             CCcCHHHHHHHHcCccCCCccc
Confidence            9999999999999999998654

>KOG4727 consensus U1-like Zn-finger protein [General function prediction only]

Probab=97.55  E-value=5.5e-05  Score=66.18  Aligned_cols=37  Identities=27%  Similarity=0.484  Sum_probs=33.5

Q ss_pred             cccccccccceeeeCCHHHHHHhhcchhHHHHHHHHh
Q 024438          206 VDSVRVCTVCNIACNGQEAFNDHLSGKKHAAQVITLL  242 (267)
Q Consensus       206 ~~~~~~C~lCnVscnSe~~~~sHL~GKKHkkkvkkl~  242 (267)
                      ....|||.+|++.+..-.+|-.|++||+|+.++..++
T Consensus        72 q~~GyyCdVCdcvvKDSinflDHiNgKkHqrnlgmsm  108 (193)
T KOG4727|consen   72 QKGGYYCDVCDCVVKDSINFLDHINGKKHQRNLGMSM  108 (193)
T ss_pred             ccCceeeeecceeehhhHHHHHHhccHHHHHHHhhhh
Confidence            4568999999999999999999999999999997554

>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.46  E-value=0.00011  Score=49.27  Aligned_cols=33  Identities=24%  Similarity=0.382  Sum_probs=20.8

Q ss_pred             CCcccccceeee--CCHHHHHHHhCCchhHHHHHh
Q 024438          134 QPVRCVVCNIDC--NSKDVFQKHISGKKHLRNLQN  166 (267)
Q Consensus       134 ~~~~C~LCnVsc--tS~~~l~sH~~GKKHqknlk~  166 (267)
                      ..+||+.|++.+  ++...-+.|..|.+|+.++++
T Consensus         2 ~ryyCdyC~~~~~~d~~~~Rk~H~~G~kH~~nv~~   36 (38)
T PF06220_consen    2 PRYYCDYCKKYLTHDSPSIRKQHERGWKHKENVKR   36 (38)
T ss_dssp             -S-B-TTT--B-S--SHHHHHHHT--THHHHHHHH
T ss_pred             cCeecccccceecCCChHHHHHhhccHHHHHHHHH
Confidence            468999999999  455667999999999999876

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.

>KOG4727 consensus U1-like Zn-finger protein [General function prediction only]

Probab=97.06  E-value=0.00032  Score=61.49  Aligned_cols=36  Identities=36%  Similarity=0.504  Sum_probs=33.2

Q ss_pred             CCcccccceeeeCCHHHHHHHhCCchhHHHHHhhcC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHN  169 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~~  169 (267)
                      --|||.||+..+-...+|..|++||+|+.|+.....
T Consensus        74 ~GyyCdVCdcvvKDSinflDHiNgKkHqrnlgmsm~  109 (193)
T KOG4727|consen   74 GGYYCDVCDCVVKDSINFLDHINGKKHQRNLGMSMR  109 (193)
T ss_pred             CceeeeecceeehhhHHHHHHhccHHHHHHHhhhhc
Confidence            569999999999999999999999999999998553

>PF14968 CCDC84: Coiled coil protein 84

Probab=97.03  E-value=0.00054  Score=65.72  Aligned_cols=97  Identities=16%  Similarity=0.268  Sum_probs=61.8

Q ss_pred             ccccceeeeCCHHHHHHHhCCchhHHHHHhhcCCCccccccccccCCCCCCChhHHH--HHHHhhhcCCCcccccccccc
Q 024438          137 RCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCNTINKVSLPSQELE--MKRQKLLNGGAAVDSVRVCTV  214 (267)
Q Consensus       137 ~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~~~~~~~~k~s~Nt~G~~~aP~ed~e--vkkqklle~~~~~~~~~~C~l  214 (267)
                      ||.||+.+...   -+-|..+++|+++|..+...-..  +.            .|..  ++.-.++.........|||-.
T Consensus         1 yC~vCr~~h~~---gr~H~Y~~~Hq~~L~~~L~rf~~--Kl------------~d~R~~lk~p~v~~~~~~~~~~fWC~f   63 (336)
T PF14968_consen    1 YCEVCRRNHDQ---GRRHVYSPKHQKSLSAFLSRFRS--KL------------SDARFFLKKPSVLRYDPEHRNRFWCVF   63 (336)
T ss_pred             CcchhhCcccc---cCCCccCHHHHHHHHHHHHHHHH--HH------------HHHHHHHhCCccCCCCccccceeEeeC
Confidence            79999997765   88999999999999986432100  00            0000  000000011123456899999


Q ss_pred             ceeeeCCH------HHHHHhhcchhHHHHHHHHhhhcCCCCC
Q 024438          215 CNIACNGQ------EAFNDHLSGKKHAAQVITLLSSLAFSLI  250 (267)
Q Consensus       215 CnVscnSe------~~~~sHL~GKKHkkkvkkl~~~~~~s~~  250 (267)
                      |+....--      ..+-.||.+..|++++++.--+.+...|
T Consensus        64 C~~ev~~~~s~~~~~~ai~HLaS~eH~k~vk~F~w~~g~~~d  105 (336)
T PF14968_consen   64 CDCEVREHDSSFACGGAIEHLASPEHRKNVKKFWWKNGADMD  105 (336)
T ss_pred             ccchhhhccchhhhccHHhhcCCHHHHHHHHHHHHHcCCCcc
Confidence            99877533      3677999999999999987655553333

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.93  E-value=0.00046  Score=68.38  Aligned_cols=36  Identities=31%  Similarity=0.550  Sum_probs=32.7

Q ss_pred             ccccccceeeeCCHHHHHHhhcchhHHHHHHHHhhh
Q 024438          209 VRVCTVCNIACNGQEAFNDHLSGKKHAAQVITLLSS  244 (267)
Q Consensus       209 ~~~C~lCnVscnSe~~~~sHL~GKKHkkkvkkl~~~  244 (267)
                      .++|-+||.+|.|+.+|..|.++|||+++|.+|-.+
T Consensus       292 ~lyC~vCnKsFKseKq~kNHEnSKKHkenv~eLrqe  327 (508)
T KOG0717|consen  292 VLYCVVCNKSFKSEKQLKNHENSKKHKENVAELRQE  327 (508)
T ss_pred             ceEEeeccccccchHHHHhhHHHHHHHHHHHHHHHH
Confidence            499999999999999999999999999999866443

>KOG3454 consensus U1 snRNP-specific protein C [RNA processing and modification]

Probab=96.49  E-value=0.0013  Score=57.25  Aligned_cols=31  Identities=23%  Similarity=0.415  Sum_probs=27.8

Q ss_pred             ccccccceeee--CCHHHHHHhhcchhHHHHHH
Q 024438          209 VRVCTVCNIAC--NGQEAFNDHLSGKKHAAQVI  239 (267)
Q Consensus       209 ~~~C~lCnVsc--nSe~~~~sHL~GKKHkkkvk  239 (267)
                      +|||+-|+...  .|..+-+.|+.|+||+++++
T Consensus         3 RYyCDYCdt~LthDslsvRK~H~~GrkH~~nvk   35 (165)
T KOG3454|consen    3 RYYCDYCDTYLTHDSLSVRKTHCGGRKHKDNVK   35 (165)
T ss_pred             cchhhhhhhhhhcccHHHHHhhhhhHHHHHHHH
Confidence            69999999776  46789999999999999998

>PLN02748 tRNA dimethylallyltransferase

Probab=96.41  E-value=0.0023  Score=63.91  Aligned_cols=37  Identities=24%  Similarity=0.502  Sum_probs=32.9

Q ss_pred             ccccccccee-eeCCHHHHHHhhcchhHHHHHHHHhhh
Q 024438          208 SVRVCTVCNI-ACNGQEAFNDHLSGKKHAAQVITLLSS  244 (267)
Q Consensus       208 ~~~~C~lCnV-scnSe~~~~sHL~GKKHkkkvkkl~~~  244 (267)
                      ..|.|++|+. .++.+.+.+.|++|++|+++++++.++
T Consensus       417 ~~~~Ce~C~~~~~~G~~eW~~Hlksr~Hk~~~~~~~k~  454 (468)
T PLN02748        417 TQYVCEACGNKVLRGAHEWEQHKQGRGHRKRVQRLKQK  454 (468)
T ss_pred             ccccccCCCCcccCCHHHHHHHhcchHHHHHHhHHHhh
Confidence            4678999997 899999999999999999999977553

>KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only]

Probab=96.14  E-value=0.00078  Score=69.57  Aligned_cols=35  Identities=11%  Similarity=0.280  Sum_probs=31.8

Q ss_pred             CCcccccceeeeCCHHHHHHHhCCchhHHHHHhhc
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQH  168 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~  168 (267)
                      ..+.|++|-++|++.+.+-.|+.+-+|.+..+...
T Consensus       234 ~el~cEksi~tcs~pd~~g~alRrv~ec~~skL~~  268 (816)
T KOG3792|consen  234 LELHCEKSIVTCSGPDAYGAALRRVKECKVSKLHK  268 (816)
T ss_pred             HHHHHHHhhccccCccchHHHHHHHHHhhhhcccc
Confidence            56889999999999999999999999998887754

>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]

Probab=95.61  E-value=0.0057  Score=59.16  Aligned_cols=37  Identities=30%  Similarity=0.620  Sum_probs=32.7

Q ss_pred             CCCcccccceeeeCCHHHHHHHhCCchhHHHHHhhcC
Q 024438          133 IQPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHN  169 (267)
Q Consensus       133 ~~~~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~~  169 (267)
                      ...+||.+|+-.|....+|+.|+.||.|.++.+..+.
T Consensus       236 ~~~~YC~~C~r~f~~~~VFe~Hl~gK~H~k~~~~~~~  272 (470)
T COG5188         236 FPKVYCVKCGREFSRSKVFEYHLEGKRHCKEGQGKEE  272 (470)
T ss_pred             ccceeeHhhhhHhhhhHHHHHHHhhhhhhhhhhhhhH
Confidence            4578999999999999999999999999998776543

>smart00586 ZnF_DBF Zinc finger in DBF-like proteins

Probab=95.11  E-value=0.009  Score=42.36  Aligned_cols=28  Identities=21%  Similarity=0.366  Sum_probs=24.7

Q ss_pred             ccccccceeeeCCHHHHHHhhcchhHHHHHH
Q 024438          209 VRVCTVCNIACNGQEAFNDHLSGKKHAAQVI  239 (267)
Q Consensus       209 ~~~C~lCnVscnSe~~~~sHL~GKKHkkkvk  239 (267)
                      .-||+.|.+.|.   .|+.|+.|++|++-++
T Consensus         5 ~GYCE~Cr~kfd---~l~~Hi~s~~Hr~FA~   32 (49)
T smart00586        5 PGYCENCREKYD---DLETHLLSEKHRRFAE   32 (49)
T ss_pred             CcccccHhHHHh---hHHHHhccHHHHHHHc
Confidence            579999999997   7899999999998654

>PF04988 AKAP95: A-kinase anchoring protein 95 (AKAP95); InterPro: IPR007071 A-kinase (or PKA)-anchoring protein AKAP95 is implicated in mitotic chromosome condensation by acting as a targeting molecule for the condensin complex

Probab=95.08  E-value=0.066  Score=46.70  Aligned_cols=99  Identities=21%  Similarity=0.333  Sum_probs=64.1

Q ss_pred             cccccceeeeCCHHHHHHHhCCchhHHHHHhhcCCCcc-c---c------c------c---ccccCCC--C------CCC
Q 024438          136 VRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAA-T---L------K------R---SCNTINK--V------SLP  188 (267)
Q Consensus       136 ~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~~~~~~-~---~------k------~---s~Nt~G~--~------~aP  188 (267)
                      |.|.+|+...-.+.+.+.|+.++-|+..++.++..... +   +      +      +   ..+..+.  .      ..-
T Consensus         1 F~Cs~CKfrtf~~~ei~~HleS~~H~E~~~~i~tkl~k~~~dFLqEy~~nk~KKt~~r~~~~~~~~~~~~~ie~D~~~gi   80 (165)
T PF04988_consen    1 FTCSFCKFRTFEEKEIEKHLESKFHKETLKYIQTKLPKKTMDFLQEYMVNKFKKTESRRQQLENSSEASKQIEQDVMEGI   80 (165)
T ss_pred             CccceeeeecccHHHHHHHHccchHHHHHHHHHhcCChHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcccccccchhhhc
Confidence            67999999999999999999999999999988543211 0   0      0      0   0000000  0      000


Q ss_pred             hhHHHHHHHhhhcCCCccccccccccceeeeCC-HHHHHHhhcchhHHHHHHHHhhh
Q 024438          189 SQELEMKRQKLLNGGAAVDSVRVCTVCNIACNG-QEAFNDHLSGKKHAAQVITLLSS  244 (267)
Q Consensus       189 ~ed~evkkqklle~~~~~~~~~~C~lCnVscnS-e~~~~sHL~GKKHkkkvkkl~~~  244 (267)
                      +++.-+.+          -...+|..|++.... ...++.|+.+.-|.++-+...++
T Consensus        81 g~ehfm~K----------VEa~hCsACd~~IP~~~~~vQ~Hl~S~~H~~Nrr~~~eq  127 (165)
T PF04988_consen   81 GQEHFMKK----------VEAAHCSACDVFIPMQHSSVQKHLKSQDHNKNRRAMMEQ  127 (165)
T ss_pred             CHHHHHHH----------HHHhhhhHhhhhccCcHHHHHHHhccHHHHhhHHHHHHH
Confidence            11111111          135799999998855 56889999999999987754443

The protein contains two zinc fingers which are thought to mediate the binding of AKAP95 to DNA [].; GO: 0003677 DNA binding, 0005634 nucleus

>smart00586 ZnF_DBF Zinc finger in DBF-like proteins

Probab=95.02  E-value=0.01  Score=42.10  Aligned_cols=30  Identities=23%  Similarity=0.433  Sum_probs=25.5

Q ss_pred             CCCcccccceeeeCCHHHHHHHhCCchhHHHHH
Q 024438          133 IQPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQ  165 (267)
Q Consensus       133 ~~~~~C~LCnVsctS~~~l~sH~~GKKHqknlk  165 (267)
                      .+..||++|.+.|.   .|+.|+.+++|++=.+
T Consensus         3 ~k~GYCE~Cr~kfd---~l~~Hi~s~~Hr~FA~   32 (49)
T smart00586        3 KKPGYCENCREKYD---DLETHLLSEKHRRFAE   32 (49)
T ss_pred             CCCcccccHhHHHh---hHHHHhccHHHHHHHc
Confidence            45789999999987   6889999999997644

>KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification]

Probab=94.92  E-value=0.015  Score=55.22  Aligned_cols=34  Identities=24%  Similarity=0.444  Sum_probs=29.7

Q ss_pred             cccccccceeee-CCHHHHHHhhcchhHHHHHHHH
Q 024438          208 SVRVCTVCNIAC-NGQEAFNDHLSGKKHAAQVITL  241 (267)
Q Consensus       208 ~~~~C~lCnVsc-nSe~~~~sHL~GKKHkkkvkkl  241 (267)
                      ...||+.|+|++ ++....+.|-+|+||+.+|++.
T Consensus         9 ~kkfCdyCKiWi~dN~~Sv~~He~GkrHke~V~Kr   43 (336)
T KOG0150|consen    9 PKKFCDYCKIWIKDNPASVRFHERGKRHKENVAKR   43 (336)
T ss_pred             cchhhhhhhhhhcCChHHHHhHhhhhHHHHHHHHH
Confidence            368999999999 6677889999999999999743

>PF07535 zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=94.86  E-value=0.015  Score=41.16  Aligned_cols=28  Identities=18%  Similarity=0.482  Sum_probs=24.6

Q ss_pred             ccccccceeeeCCHHHHHHhhcchhHHHHHH
Q 024438          209 VRVCTVCNIACNGQEAFNDHLSGKKHAAQVI  239 (267)
Q Consensus       209 ~~~C~lCnVscnSe~~~~sHL~GKKHkkkvk  239 (267)
                      .-||+.|.+.|.   .|+.|+.+++|++-+.
T Consensus         5 ~GYCE~C~~ky~---~l~~Hi~s~~Hr~FA~   32 (49)
T PF07535_consen    5 PGYCENCRVKYD---DLEEHIQSEKHRKFAE   32 (49)
T ss_pred             CccCccccchhh---hHHHHhCCHHHHHHHc
Confidence            579999999997   5899999999998653

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. In eukaryotes, initiation of DNA replication requires the assembly of pre-replication complexes (pre-RCs) on chromatin during the G1 phase. In the S phase, pre-RCs are activated by two protein kinases, Cdk2 and Cdc7, which results in the loading of replication factors and the unwinding of replication origins by the MCM helicase complex []. Cdc7 is a serine/threonine kinase that is conserved from yeast to human. It is regulated by its association with a regulatory subunit, the Dbf4 protein. This complex is often referred to as DDK (Dbf4-dependent kinase) []. DBF4 contains an N-terminal BRCT domain and a C-terminal conserved region that could potentially coordinate one zinc atom, the DBF4-type zinc finger. This entry represents the zinc finger, which is important for the interaction with Cdc7 [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding

>PLN02748 tRNA dimethylallyltransferase

Probab=94.83  E-value=0.021  Score=57.13  Aligned_cols=38  Identities=16%  Similarity=0.359  Sum_probs=33.4

Q ss_pred             CCCCCccccccee-eeCCHHHHHHHhCCchhHHHHHhhc
Q 024438          131 KVIQPVRCVVCNI-DCNSKDVFQKHISGKKHLRNLQNQH  168 (267)
Q Consensus       131 K~~~~~~C~LCnV-sctS~~~l~sH~~GKKHqknlk~l~  168 (267)
                      +.-..+.|++|+. .+.++.+-+.|+.|++|++++++..
T Consensus       414 ~~~~~~~Ce~C~~~~~~G~~eW~~Hlksr~Hk~~~~~~~  452 (468)
T PLN02748        414 ELWTQYVCEACGNKVLRGAHEWEQHKQGRGHRKRVQRLK  452 (468)
T ss_pred             cccccccccCCCCcccCCHHHHHHHhcchHHHHHHhHHH
Confidence            3446778999998 8999999999999999999999754

>COG5112 UFD2 U1-like Zn-finger-containing protein [General function prediction only]

Probab=94.68  E-value=0.015  Score=47.66  Aligned_cols=43  Identities=21%  Similarity=0.348  Sum_probs=36.7

Q ss_pred             cccccccceeeeCCHHHHHHhhcchhHHHHHHHHhhhcCCCCCC
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLSGKKHAAQVITLLSSLAFSLID  251 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~GKKHkkkvkkl~~~~~~s~~~  251 (267)
                      ..+||.-|...|-++..|..|.+|+-|++.++.+.+ .++++++
T Consensus        54 GqhYCieCaryf~t~~aL~~HkkgkvHkRR~KelRe-vpytQe~   96 (126)
T COG5112          54 GQHYCIECARYFITEKALMEHKKGKVHKRRAKELRE-VPYTQED   96 (126)
T ss_pred             ceeeeehhHHHHHHHHHHHHHhccchhHHHHHHHhc-CcchhHH
Confidence            479999999999999999999999999999998754 4445544

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=94.66  E-value=0.021  Score=32.51  Aligned_cols=21  Identities=14%  Similarity=0.545  Sum_probs=17.4

Q ss_pred             cccccceeeeCCHHHHHHhhc
Q 024438          210 RVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       210 ~~C~lCnVscnSe~~~~sHL~  230 (267)
                      |.|.+|+..|++...|+.|++
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~   21 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMR   21 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHH
Confidence            579999999999999999985

...

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=94.65  E-value=0.021  Score=33.07  Aligned_cols=22  Identities=14%  Similarity=0.517  Sum_probs=20.0

Q ss_pred             cccccceeeeCCHHHHHHhhcc
Q 024438          210 RVCTVCNIACNGQEAFNDHLSG  231 (267)
Q Consensus       210 ~~C~lCnVscnSe~~~~sHL~G  231 (267)
                      |.|..|+..|++...|+.|++-
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            5699999999999999999864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]

Probab=94.61  E-value=0.019  Score=47.90  Aligned_cols=37  Identities=16%  Similarity=0.319  Sum_probs=34.6

Q ss_pred             CCcccccceeeeCCHHHHHHHhCCchhHHHHHhhcCC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNP  170 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~~~  170 (267)
                      ..|||=.|.--|.+...++.|+.||.|+++++.+...
T Consensus        56 GqfyCi~CaRyFi~~~~l~~H~ktK~HKrRvK~l~~~   92 (129)
T KOG3408|consen   56 GQFYCIECARYFIDAKALKTHFKTKVHKRRVKELREV   92 (129)
T ss_pred             ceeehhhhhhhhcchHHHHHHHhccHHHHHHHhcccC
Confidence            5799999999999999999999999999999998743

>KOG0227 consensus Splicing factor 3a, subunit 2 [RNA processing and modification]

Probab=94.53  E-value=0.019  Score=51.40  Aligned_cols=36  Identities=22%  Similarity=0.373  Sum_probs=32.2

Q ss_pred             ccccccccceeeeCCHHHHHHhhcchhHHHHHHHHh
Q 024438          207 DSVRVCTVCNIACNGQEAFNDHLSGKKHAAQVITLL  242 (267)
Q Consensus       207 ~~~~~C~lCnVscnSe~~~~sHL~GKKHkkkvkkl~  242 (267)
                      ...|-|.+|+-.-+++..+..|..||||+.+|.+..
T Consensus        51 ~G~yeCkLClT~H~ne~Syl~HtqGKKHq~Nlarra   86 (222)
T KOG0227|consen   51 LGKYECKLCLTLHNNEGSYLAHTQGKKHQTNLARRA   86 (222)
T ss_pred             CcceeehhhhhhhcchhhhhhhhccchhhHHHHHHH
Confidence            347999999999999999999999999999987543

>PF07535 zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=94.43  E-value=0.025  Score=40.05  Aligned_cols=30  Identities=23%  Similarity=0.564  Sum_probs=25.4

Q ss_pred             CCCcccccceeeeCCHHHHHHHhCCchhHHHHH
Q 024438          133 IQPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQ  165 (267)
Q Consensus       133 ~~~~~C~LCnVsctS~~~l~sH~~GKKHqknlk  165 (267)
                      .+.-||+.|.+.+.+   |+.|+.+++|++=..
T Consensus         3 ~k~GYCE~C~~ky~~---l~~Hi~s~~Hr~FA~   32 (49)
T PF07535_consen    3 KKPGYCENCRVKYDD---LEEHIQSEKHRKFAE   32 (49)
T ss_pred             CCCccCccccchhhh---HHHHhCCHHHHHHHc
Confidence            356799999999984   899999999997643

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. In eukaryotes, initiation of DNA replication requires the assembly of pre-replication complexes (pre-RCs) on chromatin during the G1 phase. In the S phase, pre-RCs are activated by two protein kinases, Cdk2 and Cdc7, which results in the loading of replication factors and the unwinding of replication origins by the MCM helicase complex []. Cdc7 is a serine/threonine kinase that is conserved from yeast to human. It is regulated by its association with a regulatory subunit, the Dbf4 protein. This complex is often referred to as DDK (Dbf4-dependent kinase) []. DBF4 contains an N-terminal BRCT domain and a C-terminal conserved region that could potentially coordinate one zinc atom, the DBF4-type zinc finger. This entry represents the zinc finger, which is important for the interaction with Cdc7 [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=94.41  E-value=0.03  Score=33.68  Aligned_cols=22  Identities=18%  Similarity=0.388  Sum_probs=20.2

Q ss_pred             cccccceeeeCCHHHHHHhhcc
Q 024438          210 RVCTVCNIACNGQEAFNDHLSG  231 (267)
Q Consensus       210 ~~C~lCnVscnSe~~~~sHL~G  231 (267)
                      +.|..|+..|.+...|..|++-
T Consensus         2 ~~C~~C~~~F~~~~~l~~H~~~   23 (27)
T PF13912_consen    2 FECDECGKTFSSLSALREHKRS   23 (27)
T ss_dssp             EEETTTTEEESSHHHHHHHHCT
T ss_pred             CCCCccCCccCChhHHHHHhHH
Confidence            6899999999999999999853

>PTZ00448 hypothetical protein; Provisional

Probab=94.17  E-value=0.035  Score=53.92  Aligned_cols=36  Identities=22%  Similarity=0.442  Sum_probs=33.4

Q ss_pred             CcccccceeeeCCHHHHHHHhCCchhHHHHHhhcCC
Q 024438          135 PVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNP  170 (267)
Q Consensus       135 ~~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~~~  170 (267)
                      .+.|..|++.|.+....+.||...+|+.||++...+
T Consensus       314 ~~tC~~C~v~F~~~~~qR~H~KSDwHrYNLKRkl~g  349 (373)
T PTZ00448        314 MLLCRKCNIQLMDHNAFKQHYRSEWHIFNTKRNARK  349 (373)
T ss_pred             CccccccccccCCHHHHHHHhhhhHHHHHHHHHhcC
Confidence            588999999999999999999999999999997655

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=93.87  E-value=0.069  Score=48.66  Aligned_cols=99  Identities=16%  Similarity=0.261  Sum_probs=61.1

Q ss_pred             CCCCCCcccccceeeeCCHHHHHHHhCCchhHHHHHhhcCCCccccccccccCCCCCCChhHHHHHHHhhhcCCCccccc
Q 024438          130 SKVIQPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCNTINKVSLPSQELEMKRQKLLNGGAAVDSV  209 (267)
Q Consensus       130 pK~~~~~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~~~~~~~~k~s~Nt~G~~~aP~ed~evkkqklle~~~~~~~~  209 (267)
                      .+....|.|.||...|.=+..+..|+.-..-.++  -+-.           -.|.-..-+  +..|+---   ....-..
T Consensus       112 ssd~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr--~lct-----------~cgkgfndt--fdlkrh~r---thtgvrp  173 (267)
T KOG3576|consen  112 SSDQDSFTCRVCGKKFGLQRMLNRHLKCHSDVKR--HLCT-----------FCGKGFNDT--FDLKRHTR---THTGVRP  173 (267)
T ss_pred             CCCCCeeeeehhhhhhhHHHHHHHHhhhccHHHH--HHHh-----------hccCcccch--hhhhhhhc---cccCccc
Confidence            4456789999999999999999999854322221  1111           111111111  11111000   0112347


Q ss_pred             cccccceeeeCCHHHHHHhhc---chhHHHHHHHHhhhcC
Q 024438          210 RVCTVCNIACNGQEAFNDHLS---GKKHAAQVITLLSSLA  246 (267)
Q Consensus       210 ~~C~lCnVscnSe~~~~sHL~---GKKHkkkvkkl~~~~~  246 (267)
                      |.|++|++.|+-.-.|++||+   |..|+-..++..+++-
T Consensus       174 ykc~~c~kaftqrcsleshl~kvhgv~~~yaykerr~kl~  213 (267)
T KOG3576|consen  174 YKCSLCEKAFTQRCSLESHLKKVHGVQHQYAYKERRAKLY  213 (267)
T ss_pred             cchhhhhHHHHhhccHHHHHHHHcCchHHHHHHHhhhhee
Confidence            999999999999999999986   7888887776655444

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=93.83  E-value=0.029  Score=55.94  Aligned_cols=33  Identities=33%  Similarity=0.599  Sum_probs=31.6

Q ss_pred             cccccceeeeCCHHHHHHHhCCchhHHHHHhhc
Q 024438          136 VRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQH  168 (267)
Q Consensus       136 ~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~  168 (267)
                      +||-+|+.+|-|+.++..|-.+|||+++|..+.
T Consensus       293 lyC~vCnKsFKseKq~kNHEnSKKHkenv~eLr  325 (508)
T KOG0717|consen  293 LYCVVCNKSFKSEKQLKNHENSKKHKENVAELR  325 (508)
T ss_pred             eEEeeccccccchHHHHhhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999864

>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]

Probab=93.48  E-value=0.029  Score=54.47  Aligned_cols=36  Identities=22%  Similarity=0.329  Sum_probs=32.1

Q ss_pred             ccccccccceeeeCCHHHHHHhhcchhHHHHHHHHh
Q 024438          207 DSVRVCTVCNIACNGQEAFNDHLSGKKHAAQVITLL  242 (267)
Q Consensus       207 ~~~~~C~lCnVscnSe~~~~sHL~GKKHkkkvkkl~  242 (267)
                      ...+||..|+..|...++|+.|+.||.|.+..++..
T Consensus       236 ~~~~YC~~C~r~f~~~~VFe~Hl~gK~H~k~~~~~~  271 (470)
T COG5188         236 FPKVYCVKCGREFSRSKVFEYHLEGKRHCKEGQGKE  271 (470)
T ss_pred             ccceeeHhhhhHhhhhHHHHHHHhhhhhhhhhhhhh
Confidence            457999999999999999999999999999887543

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=93.48  E-value=0.061  Score=30.53  Aligned_cols=21  Identities=24%  Similarity=0.659  Sum_probs=17.4

Q ss_pred             cccccceeeeCCHHHHHHHhC
Q 024438          136 VRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       136 ~~C~LCnVsctS~~~l~sH~~  156 (267)
                      |.|.+|+..|.+...++.|+.
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~   21 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMR   21 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHH
Confidence            579999999999999999974

...

>KOG0227 consensus Splicing factor 3a, subunit 2 [RNA processing and modification]

Probab=92.96  E-value=0.056  Score=48.49  Aligned_cols=36  Identities=28%  Similarity=0.503  Sum_probs=32.8

Q ss_pred             CCCcccccceeeeCCHHHHHHHhCCchhHHHHHhhc
Q 024438          133 IQPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQH  168 (267)
Q Consensus       133 ~~~~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~  168 (267)
                      ...+-|.||..--+++..+..|..||||+.||.+..
T Consensus        51 ~G~yeCkLClT~H~ne~Syl~HtqGKKHq~Nlarra   86 (222)
T KOG0227|consen   51 LGKYECKLCLTLHNNEGSYLAHTQGKKHQTNLARRA   86 (222)
T ss_pred             CcceeehhhhhhhcchhhhhhhhccchhhHHHHHHH
Confidence            456889999999999999999999999999998854

>KOG3454 consensus U1 snRNP-specific protein C [RNA processing and modification]

Probab=92.86  E-value=0.057  Score=47.09  Aligned_cols=35  Identities=26%  Similarity=0.417  Sum_probs=29.7

Q ss_pred             CCcccccceeee--CCHHHHHHHhCCchhHHHHHhhc
Q 024438          134 QPVRCVVCNIDC--NSKDVFQKHISGKKHLRNLQNQH  168 (267)
Q Consensus       134 ~~~~C~LCnVsc--tS~~~l~sH~~GKKHqknlk~l~  168 (267)
                      ..+||+-|++.+  .|..+-++|+.|+||++|++...
T Consensus         2 pRYyCDYCdt~LthDslsvRK~H~~GrkH~~nvk~YY   38 (165)
T KOG3454|consen    2 PRYYCDYCDTYLTHDSLSVRKTHCGGRKHKDNVKDYY   38 (165)
T ss_pred             CcchhhhhhhhhhcccHHHHHhhhhhHHHHHHHHHHH
Confidence            468999999655  47889999999999999998843

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=92.86  E-value=0.096  Score=31.40  Aligned_cols=21  Identities=19%  Similarity=0.417  Sum_probs=19.7

Q ss_pred             cccccceeeeCCHHHHHHHhC
Q 024438          136 VRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       136 ~~C~LCnVsctS~~~l~sH~~  156 (267)
                      +.|.+|+..|.+...|..|..
T Consensus         2 ~~C~~C~~~F~~~~~l~~H~~   22 (27)
T PF13912_consen    2 FECDECGKTFSSLSALREHKR   22 (27)
T ss_dssp             EEETTTTEEESSHHHHHHHHC
T ss_pred             CCCCccCCccCChhHHHHHhH
Confidence            679999999999999999993

>KOG3032 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.83  E-value=0.08  Score=48.73  Aligned_cols=35  Identities=29%  Similarity=0.561  Sum_probs=31.9

Q ss_pred             ccccccccceeeeCCHHHHHHhhcchhHHHHHHHHh
Q 024438          207 DSVRVCTVCNIACNGQEAFNDHLSGKKHAAQVITLL  242 (267)
Q Consensus       207 ~~~~~C~lCnVscnSe~~~~sHL~GKKHkkkvkkl~  242 (267)
                      .....|.+||+-.. +.....|++||+|+.++.+|-
T Consensus        33 sgql~C~vCn~piK-p~lW~vHvnsKkHre~id~lK   67 (264)
T KOG3032|consen   33 SGQLVCRVCNVPIK-PSLWDVHVNSKKHREAIDSLK   67 (264)
T ss_pred             CCCeeEEEecCccc-HHHHHHHhccHHHHHHHHHHH
Confidence            34789999999999 999999999999999998775

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=92.61  E-value=0.11  Score=57.26  Aligned_cols=92  Identities=12%  Similarity=0.176  Sum_probs=67.0

Q ss_pred             CCcccccceeeeCCHHHHHHHhCCchhHHHHHhhcCCCccccccccccCCCCCCChhHHHHHHHhhhcCCCccccccccc
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCNTINKVSLPSQELEMKRQKLLNGGAAVDSVRVCT  213 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~~~~~~~~k~s~Nt~G~~~aP~ed~evkkqklle~~~~~~~~~~C~  213 (267)
                      +.+.|..|+..+.-++.|..|++.|-|.-+.......+...    .+..|.              .   .+.....+.|.
T Consensus       464 kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~----~~arg~--------------~---~~~~~~p~~C~  522 (1406)
T KOG1146|consen  464 KTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHP----RLARGE--------------V---YRCPGKPYPCR  522 (1406)
T ss_pred             ccccCCccchhhhhHHHhhhcccccccccchhHhHhccccc----cccccc--------------c---ccCCCCcccce
Confidence            67889999999999999999999999987763322221000    000000              0   11223478999


Q ss_pred             cceeeeCCHHHHHHhhcchhHHHHHHHHhhhcC
Q 024438          214 VCNIACNGQEAFNDHLSGKKHAAQVITLLSSLA  246 (267)
Q Consensus       214 lCnVscnSe~~~~sHL~GKKHkkkvkkl~~~~~  246 (267)
                      .|+++++....+-.||++-+|+.+++.+++..+
T Consensus       523 ~C~~stttng~LsihlqS~~h~~~lee~~~~~g  555 (1406)
T KOG1146|consen  523 ACNYSTTTNGNLSIHLQSDLHRNELEEAEENAG  555 (1406)
T ss_pred             eeeeeeecchHHHHHHHHHhhHHHHHHHHhccc
Confidence            999999999999999999999999887766444

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=92.56  E-value=0.057  Score=40.75  Aligned_cols=35  Identities=31%  Similarity=0.599  Sum_probs=27.1

Q ss_pred             CCCCCcccccceeeeCCHHHHHHHhCCchhHHHHH
Q 024438          131 KVIQPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQ  165 (267)
Q Consensus       131 K~~~~~~C~LCnVsctS~~~l~sH~~GKKHqknlk  165 (267)
                      +....+.|.+|+..|.+...++.|+..+.|++...
T Consensus        46 ~~~~~~~C~~C~~~f~s~~~l~~Hm~~~~H~~~~~   80 (100)
T PF12756_consen   46 KVKESFRCPYCNKTFRSREALQEHMRSKHHKKRNS   80 (100)
T ss_dssp             ---SSEEBSSSS-EESSHHHHHHHHHHTTTTC-S-
T ss_pred             ccCCCCCCCccCCCCcCHHHHHHHHcCccCCCccc
Confidence            33347999999999999999999999999988644

>KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification]

Probab=92.54  E-value=0.061  Score=51.23  Aligned_cols=37  Identities=22%  Similarity=0.293  Sum_probs=31.0

Q ss_pred             CCCCcccccceeeeC-CHHHHHHHhCCchhHHHHHhhc
Q 024438          132 VIQPVRCVVCNIDCN-SKDVFQKHISGKKHLRNLQNQH  168 (267)
Q Consensus       132 ~~~~~~C~LCnVsct-S~~~l~sH~~GKKHqknlk~l~  168 (267)
                      -....||++|+|++. +...-+.|-.|++|+.+|.+..
T Consensus         7 S~~kkfCdyCKiWi~dN~~Sv~~He~GkrHke~V~Kri   44 (336)
T KOG0150|consen    7 SQPKKFCDYCKIWIKDNPASVRFHERGKRHKENVAKRI   44 (336)
T ss_pred             hccchhhhhhhhhhcCChHHHHhHhhhhHHHHHHHHHH
Confidence            345679999999985 5777899999999999998843

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=91.95  E-value=0.13  Score=29.60  Aligned_cols=21  Identities=24%  Similarity=0.683  Sum_probs=19.3

Q ss_pred             cccccceeeeCCHHHHHHHhC
Q 024438          136 VRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       136 ~~C~LCnVsctS~~~l~sH~~  156 (267)
                      |.|.+|+..|.+...|+.|+.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~   21 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMR   21 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHh
Confidence            569999999999999999985

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>COG5246 PRP11 Splicing factor 3a, subunit 2 [RNA processing and modification]

Probab=91.64  E-value=0.13  Score=46.02  Aligned_cols=35  Identities=23%  Similarity=0.387  Sum_probs=31.7

Q ss_pred             ccccccccceeeeCCHHHHHHhhcchhHHHHHHHH
Q 024438          207 DSVRVCTVCNIACNGQEAFNDHLSGKKHAAQVITL  241 (267)
Q Consensus       207 ~~~~~C~lCnVscnSe~~~~sHL~GKKHkkkvkkl  241 (267)
                      ...|.|.+|+-.--++..+..|+.||||+.++.+.
T Consensus        51 ~Gk~vC~LC~T~H~~e~Sy~~H~~GKKH~~n~~rr   85 (222)
T COG5246          51 TGKYVCLLCKTKHLTEMSYVKHREGKKHKENSSRR   85 (222)
T ss_pred             CCcEEeeeeccccccHHHHHHhhccchhhhhHHHH
Confidence            45799999999999999999999999999998755

>smart00355 ZnF_C2H2 zinc finger

Probab=91.56  E-value=0.13  Score=29.25  Aligned_cols=21  Identities=19%  Similarity=0.547  Sum_probs=19.3

Q ss_pred             cccccceeeeCCHHHHHHhhc
Q 024438          210 RVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       210 ~~C~lCnVscnSe~~~~sHL~  230 (267)
                      +.|..|+..|++...|..|++
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~   21 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMR   21 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHH
Confidence            469999999999999999987

>KOG4722 consensus Zn-finger protein [General function prediction only]

Probab=90.82  E-value=0.14  Score=51.03  Aligned_cols=35  Identities=26%  Similarity=0.565  Sum_probs=31.4

Q ss_pred             ccccccceeeeCCHHHHHHhhcchhHHHHHHHHhh
Q 024438          209 VRVCTVCNIACNGQEAFNDHLSGKKHAAQVITLLS  243 (267)
Q Consensus       209 ~~~C~lCnVscnSe~~~~sHL~GKKHkkkvkkl~~  243 (267)
                      ..-|.+|||...|+.-|-+|++|+||+..|+.+..
T Consensus       493 kkqcslcnvlissevylfshvkgrkhqqal~e~~~  527 (672)
T KOG4722|consen  493 KKQCSLCNVLISSEVYLFSHVKGRKHQQALNELLL  527 (672)
T ss_pred             hhccchhhhhhhhhhhhhhhhcchhHHHHHHHHhc
Confidence            45699999999999999999999999999997643

>COG5246 PRP11 Splicing factor 3a, subunit 2 [RNA processing and modification]

Probab=90.26  E-value=0.19  Score=44.91  Aligned_cols=38  Identities=24%  Similarity=0.411  Sum_probs=33.9

Q ss_pred             CCCCcccccceeeeCCHHHHHHHhCCchhHHHHHhhcC
Q 024438          132 VIQPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHN  169 (267)
Q Consensus       132 ~~~~~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~~  169 (267)
                      ....+-|.||+..--++..+..|..||||+.|+.+.+.
T Consensus        50 h~Gk~vC~LC~T~H~~e~Sy~~H~~GKKH~~n~~rrs~   87 (222)
T COG5246          50 HTGKYVCLLCKTKHLTEMSYVKHREGKKHKENSSRRSE   87 (222)
T ss_pred             CCCcEEeeeeccccccHHHHHHhhccchhhhhHHHHHH
Confidence            34578999999999999999999999999999988743

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=90.06  E-value=0.24  Score=45.25  Aligned_cols=22  Identities=27%  Similarity=0.561  Sum_probs=19.6

Q ss_pred             ccccccceeeeCCHHHHHHhhc
Q 024438          209 VRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       209 ~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      .|.|+-|+-.-..+..+..|++
T Consensus       212 l~vcedcg~t~~~~e~~~~h~~  233 (267)
T KOG3576|consen  212 LYVCEDCGYTSERPEVYYLHLK  233 (267)
T ss_pred             eeeecccCCCCCChhHHHHHHH
Confidence            6889999988888889999987

>PTZ00448 hypothetical protein; Provisional

Probab=89.63  E-value=0.24  Score=48.28  Aligned_cols=39  Identities=21%  Similarity=0.378  Sum_probs=35.4

Q ss_pred             cccccccceeeeCCHHHHHHhhcchhHHHHHHHHhhhcC
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLSGKKHAAQVITLLSSLA  246 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~GKKHkkkvkkl~~~~~  246 (267)
                      ..+.|..|++.|.+....+.|+++--|+-+||+....++
T Consensus       313 ~~~tC~~C~v~F~~~~~qR~H~KSDwHrYNLKRkl~gLp  351 (373)
T PTZ00448        313 NMLLCRKCNIQLMDHNAFKQHYRSEWHIFNTKRNARKME  351 (373)
T ss_pred             CCccccccccccCCHHHHHHHhhhhHHHHHHHHHhcCCC
Confidence            368899999999999999999999999999998776665

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=88.76  E-value=0.33  Score=51.65  Aligned_cols=62  Identities=21%  Similarity=0.432  Sum_probs=47.1

Q ss_pred             CCCCCCCcccccceeeeCCHHHHHHHhCCchhHHHHHhhcCCCccccccccccCCCCCCChhHHHHHHHhhhcCCCcccc
Q 024438          129 QSKVIQPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCNTINKVSLPSQELEMKRQKLLNGGAAVDS  208 (267)
Q Consensus       129 ~pK~~~~~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~~~~~~~~k~s~Nt~G~~~aP~ed~evkkqklle~~~~~~~  208 (267)
                      ..|.....-|=||.-.+..+..|+.||.-  |        .             |                       ..
T Consensus       599 ~~~~TdPNqCiiC~rVlSC~saLqmHyrt--H--------t-------------G-----------------------ER  632 (958)
T KOG1074|consen  599 ENKRTDPNQCIICLRVLSCPSALQMHYRT--H--------T-------------G-----------------------ER  632 (958)
T ss_pred             ccccCCccceeeeeecccchhhhhhhhhc--c--------c-------------C-----------------------cC
Confidence            35666778899999999999999999952  1        0             1                       12


Q ss_pred             ccccccceeeeCCHHHHHHhhcchhHHH
Q 024438          209 VRVCTVCNIACNGQEAFNDHLSGKKHAA  236 (267)
Q Consensus       209 ~~~C~lCnVscnSe~~~~sHL~GKKHkk  236 (267)
                      .|.|+||+..|+....|+.||-+-|-+-
T Consensus       633 PFkCKiCgRAFtTkGNLkaH~~vHka~p  660 (958)
T KOG1074|consen  633 PFKCKICGRAFTTKGNLKAHMSVHKAKP  660 (958)
T ss_pred             ccccccccchhccccchhhcccccccCc
Confidence            5888888888888888888887755433

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=88.47  E-value=6.7  Score=37.09  Aligned_cols=25  Identities=16%  Similarity=0.387  Sum_probs=21.9

Q ss_pred             ccccccccceeeeCCHHHHHHhhcc
Q 024438          207 DSVRVCTVCNIACNGQEAFNDHLSG  231 (267)
Q Consensus       207 ~~~~~C~lCnVscnSe~~~~sHL~G  231 (267)
                      ...|-|..|++.|-....|++|++-
T Consensus       213 EKPF~C~hC~kAFADRSNLRAHmQT  237 (279)
T KOG2462|consen  213 EKPFSCPHCGKAFADRSNLRAHMQT  237 (279)
T ss_pred             CCCccCCcccchhcchHHHHHHHHh
Confidence            4579999999999999999999873

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=87.28  E-value=0.38  Score=53.35  Aligned_cols=97  Identities=15%  Similarity=0.295  Sum_probs=66.4

Q ss_pred             CCCCCCcccccceeeeCCHHHHHHHhCCchhHHHHHhhcCCCc---cccccc----ccc-CCCCCCChhHHHHHHHhhhc
Q 024438          130 SKVIQPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSA---ATLKRS----CNT-INKVSLPSQELEMKRQKLLN  201 (267)
Q Consensus       130 pK~~~~~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~~~~~---~~~k~s----~Nt-~G~~~aP~ed~evkkqklle  201 (267)
                      .-....+-|.+|+++++....+-.|+...+|+.+++.......   ...-+.    ++. .| ...+...          
T Consensus       513 ~~~~~p~~C~~C~~stttng~LsihlqS~~h~~~lee~~~~~g~~v~~~~~~v~s~~P~~ag-~~~~ags----------  581 (1406)
T KOG1146|consen  513 RCPGKPYPCRACNYSTTTNGNLSIHLQSDLHRNELEEAEENAGEQVRLLPASVTSAVPEEAG-LGPSAGS----------  581 (1406)
T ss_pred             cCCCCcccceeeeeeeecchHHHHHHHHHhhHHHHHHHHhccccchhhhhhhhcccCccccc-CCCCCCC----------
Confidence            3445678999999999999999999999999999887654321   000000    000 00 0000000          


Q ss_pred             CCCccccccccccceeeeCCHHHHHHhhcchhHHHH
Q 024438          202 GGAAVDSVRVCTVCNIACNGQEAFNDHLSGKKHAAQ  237 (267)
Q Consensus       202 ~~~~~~~~~~C~lCnVscnSe~~~~sHL~GKKHkkk  237 (267)
                      .+......|.|++|+-.-|=...++.|+..-+|...
T Consensus       582 ~~pktkP~~~C~vc~yetniarnlrihmtss~~s~~  617 (1406)
T KOG1146|consen  582 SGPKTKPSWRCEVCSYETNIARNLRIHMTASPSSSP  617 (1406)
T ss_pred             CCCCCCCCcchhhhcchhhhhhccccccccCCCCCC
Confidence            001234579999999999999999999999999887

>COG5136 U1 snRNP-specific protein C [RNA processing and modification]

Probab=87.00  E-value=0.19  Score=43.96  Aligned_cols=31  Identities=23%  Similarity=0.292  Sum_probs=27.3

Q ss_pred             ccccccceeeeCCH--HHHHHhhcchhHHHHHH
Q 024438          209 VRVCTVCNIACNGQ--EAFNDHLSGKKHAAQVI  239 (267)
Q Consensus       209 ~~~C~lCnVscnSe--~~~~sHL~GKKHkkkvk  239 (267)
                      +|+|+-|++.++..  .+-++|+.|++|..+.+
T Consensus         3 RY~CeyC~~~LthD~lsvRk~H~~G~~H~~~~~   35 (188)
T COG5136           3 RYFCEYCNKMLTHDRLSVRKMHCGGAKHGLMRK   35 (188)
T ss_pred             chHHHHHHHHHhccHHHHHHHhhhhHHHHHHHH
Confidence            69999999998655  57899999999999886

>PF11931 DUF3449: Domain of unknown function (DUF3449); InterPro: IPR024598 This presumed domain is functionally uncharacterised

Probab=86.74  E-value=0.2  Score=44.96  Aligned_cols=38  Identities=26%  Similarity=0.457  Sum_probs=0.0

Q ss_pred             ccccccccc-eeeeCCHHHHHHhhcchhHHHHHHHHhhh
Q 024438          207 DSVRVCTVC-NIACNGQEAFNDHLSGKKHAAQVITLLSS  244 (267)
Q Consensus       207 ~~~~~C~lC-nVscnSe~~~~sHL~GKKHkkkvkkl~~~  244 (267)
                      +..|.|+|| |.++....+|+.|+...||..-++.|+-.
T Consensus        99 ~~ey~CEICGN~~Y~GrkaFekHF~E~rH~~GlrcLGI~  137 (196)
T PF11931_consen   99 GVEYKCEICGNQSYKGRKAFEKHFQEWRHAYGLRCLGIP  137 (196)
T ss_dssp             ---------------------------------------
T ss_pred             CCeeeeEeCCCcceecHHHHHHhcChhHHHccChhcCCC
Confidence            568999999 68899999999999999999999988653

It has two conserved sequence motifs: PIP and CEICG and contains a zinc-finger of the C2H2-type.; PDB: 4DGW_A.

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=86.73  E-value=0.39  Score=46.94  Aligned_cols=23  Identities=13%  Similarity=0.499  Sum_probs=18.1

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      +.|-|..|...|..+..|.+|..
T Consensus       236 n~fqC~~C~KrFaTeklL~~Hv~  258 (467)
T KOG3608|consen  236 NSFQCAQCFKRFATEKLLKSHVV  258 (467)
T ss_pred             CchHHHHHHHHHhHHHHHHHHHH
Confidence            46778888888888888888863

>smart00355 ZnF_C2H2 zinc finger

Probab=86.27  E-value=0.48  Score=26.78  Aligned_cols=21  Identities=29%  Similarity=0.592  Sum_probs=19.3

Q ss_pred             cccccceeeeCCHHHHHHHhC
Q 024438          136 VRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       136 ~~C~LCnVsctS~~~l~sH~~  156 (267)
                      +.|..|+..|.+...++.|+.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~   21 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMR   21 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHH
Confidence            469999999999999999986

>KOG3032 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.13  E-value=0.59  Score=43.17  Aligned_cols=37  Identities=22%  Similarity=0.495  Sum_probs=33.3

Q ss_pred             CCCCCcccccceeeeCCHHHHHHHhCCchhHHHHHhhc
Q 024438          131 KVIQPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQH  168 (267)
Q Consensus       131 K~~~~~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~  168 (267)
                      +......|-|||+-.- +..-..|..||+|+.++..+.
T Consensus        31 n~sgql~C~vCn~piK-p~lW~vHvnsKkHre~id~lK   67 (264)
T KOG3032|consen   31 NESGQLVCRVCNVPIK-PSLWDVHVNSKKHREAIDSLK   67 (264)
T ss_pred             CCCCCeeEEEecCccc-HHHHHHHhccHHHHHHHHHHH
Confidence            4456788999999999 999999999999999999876

>KOG2837 consensus Protein containing a U1-type Zn-finger and implicated in RNA splicing or processing [RNA processing and modification]

Probab=85.87  E-value=0.19  Score=47.36  Aligned_cols=34  Identities=21%  Similarity=0.539  Sum_probs=31.4

Q ss_pred             ccccccceeeeCCHHHHHHhhcchhHHHHHHHHh
Q 024438          209 VRVCTVCNIACNGQEAFNDHLSGKKHAAQVITLL  242 (267)
Q Consensus       209 ~~~C~lCnVscnSe~~~~sHL~GKKHkkkvkkl~  242 (267)
                      +|||.+|+..|+.+.-|+.|..+--|++++....
T Consensus        25 RwyCqmCQkQcrDeNGFkCH~~SeSHqRql~~~~   58 (309)
T KOG2837|consen   25 RWYCQMCQKQCRDENGFKCHTMSESHQRQLLLFA   58 (309)
T ss_pred             HHHHHHHHHHhccccccccccCCHHHHHHHHHHH
Confidence            7999999999999999999999999999887443

>COG5112 UFD2 U1-like Zn-finger-containing protein [General function prediction only]

Probab=85.17  E-value=0.42  Score=39.32  Aligned_cols=37  Identities=19%  Similarity=0.325  Sum_probs=34.4

Q ss_pred             CCcccccceeeeCCHHHHHHHhCCchhHHHHHhhcCC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNP  170 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~~~  170 (267)
                      ..+||=-|.--|-++..|..|..|+-|+++++.+.+.
T Consensus        54 GqhYCieCaryf~t~~aL~~HkkgkvHkRR~KelRev   90 (126)
T COG5112          54 GQHYCIECARYFITEKALMEHKKGKVHKRRAKELREV   90 (126)
T ss_pred             ceeeeehhHHHHHHHHHHHHHhccchhHHHHHHHhcC
Confidence            5799999999999999999999999999999998754

>KOG4722 consensus Zn-finger protein [General function prediction only]

Probab=84.90  E-value=0.44  Score=47.55  Aligned_cols=35  Identities=26%  Similarity=0.529  Sum_probs=31.6

Q ss_pred             CCcccccceeeeCCHHHHHHHhCCchhHHHHHhhc
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQH  168 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~  168 (267)
                      ...-|.+|||-.+|+.-+-+|..|+||++.|..+.
T Consensus       492 rkkqcslcnvlissevylfshvkgrkhqqal~e~~  526 (672)
T KOG4722|consen  492 RKKQCSLCNVLISSEVYLFSHVKGRKHQQALNELL  526 (672)
T ss_pred             hhhccchhhhhhhhhhhhhhhhcchhHHHHHHHHh
Confidence            34569999999999999999999999999999854

>PHA00732 hypothetical protein

Probab=84.14  E-value=0.94  Score=34.86  Aligned_cols=21  Identities=14%  Similarity=0.490  Sum_probs=18.8

Q ss_pred             cccccceeeeCCHHHHHHHhC
Q 024438          136 VRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       136 ~~C~LCnVsctS~~~l~sH~~  156 (267)
                      +.|.+|+..|++...++.|..
T Consensus         2 y~C~~Cgk~F~s~s~Lk~H~r   22 (79)
T PHA00732          2 FKCPICGFTTVTLFALKQHAR   22 (79)
T ss_pred             ccCCCCCCccCCHHHHHHHhh
Confidence            569999999999999999865

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=84.01  E-value=0.64  Score=47.19  Aligned_cols=37  Identities=19%  Similarity=0.321  Sum_probs=34.0

Q ss_pred             CCcccccceeeeCCHHHHHHHhCCchhHHHHHhhcCC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNP  170 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~~~  170 (267)
                      ..|+|..|++.|-+.+....||...+|+-|+++....
T Consensus        65 d~~~CstCq~~F~s~~eqr~HyksD~HR~N~Krkl~~  101 (591)
T KOG2505|consen   65 DSDQCSTCQIPFGSRQEQREHYKSDWHRFNTKRKLRG  101 (591)
T ss_pred             ccccccccCCccccHHHHHHHHHHHHHHHHHHHHhcC
Confidence            6799999999999999999999999999999985544

>PHA00733 hypothetical protein

Probab=83.93  E-value=1.5  Score=36.55  Aligned_cols=22  Identities=27%  Similarity=0.622  Sum_probs=19.6

Q ss_pred             ccccccceeeeCCHHHHHHhhc
Q 024438          209 VRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       209 ~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      .+.|.+|...|.....|..|+.
T Consensus        99 ~~~C~~CgK~F~~~~sL~~H~~  120 (128)
T PHA00733         99 SKVCPVCGKEFRNTDSTLDHVC  120 (128)
T ss_pred             CccCCCCCCccCCHHHHHHHHH
Confidence            5899999999999999999853

>PF04988 AKAP95: A-kinase anchoring protein 95 (AKAP95); InterPro: IPR007071 A-kinase (or PKA)-anchoring protein AKAP95 is implicated in mitotic chromosome condensation by acting as a targeting molecule for the condensin complex

Probab=83.13  E-value=1.3  Score=38.76  Aligned_cols=30  Identities=20%  Similarity=0.438  Sum_probs=27.2

Q ss_pred             cccccceeeeCCHHHHHHhhcchhHHHHHH
Q 024438          210 RVCTVCNIACNGQEAFNDHLSGKKHAAQVI  239 (267)
Q Consensus       210 ~~C~lCnVscnSe~~~~sHL~GKKHkkkvk  239 (267)
                      |.|.+|+...--+..++.||.|+-|++.++
T Consensus         1 F~Cs~CKfrtf~~~ei~~HleS~~H~E~~~   30 (165)
T PF04988_consen    1 FTCSFCKFRTFEEKEIEKHLESKFHKETLK   30 (165)
T ss_pred             CccceeeeecccHHHHHHHHccchHHHHHH
Confidence            679999988888999999999999997765

The protein contains two zinc fingers which are thought to mediate the binding of AKAP95 to DNA [].; GO: 0003677 DNA binding, 0005634 nucleus

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=81.48  E-value=0.59  Score=49.37  Aligned_cols=100  Identities=17%  Similarity=0.253  Sum_probs=56.3

Q ss_pred             CCCCCCcccccceeeeCCHHHHHHHhCCchhHHHHHhhcCCCccccccccccCCCCCCChhHHHHHH-HhhhcCCCcccc
Q 024438          130 SKVIQPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCNTINKVSLPSQELEMKR-QKLLNGGAAVDS  208 (267)
Q Consensus       130 pK~~~~~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~~~~~~~~k~s~Nt~G~~~aP~ed~evkk-qklle~~~~~~~  208 (267)
                      .|....|.|.+|-.+|....+|+.|+.-.+=-.-...-.......-|-.|--+|.+..=  .+..|. .++    .+...
T Consensus       235 ekne~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFKCtECgKAFKf--KHHLKEHlRI----HSGEK  308 (1007)
T KOG3623|consen  235 EKNEPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKFKCTECGKAFKF--KHHLKEHLRI----HSGEK  308 (1007)
T ss_pred             hhCCCCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhccccccccchhhhh--HHHHHhhhee----ecCCC
Confidence            55666788999999999999999888643210000000000000001112223321100  001111 112    12245


Q ss_pred             ccccccceeeeCCHHHHHHhhcchhHH
Q 024438          209 VRVCTVCNIACNGQEAFNDHLSGKKHA  235 (267)
Q Consensus       209 ~~~C~lCnVscnSe~~~~sHL~GKKHk  235 (267)
                      .|-|.-|++.|..-..|-+|+.+||=.
T Consensus       309 PfeCpnCkKRFSHSGSySSHmSSKKCI  335 (1007)
T KOG3623|consen  309 PFECPNCKKRFSHSGSYSSHMSSKKCI  335 (1007)
T ss_pred             CcCCcccccccccCCcccccccccchh
Confidence            799999999999999999999999977

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=81.33  E-value=0.74  Score=45.85  Aligned_cols=27  Identities=15%  Similarity=0.292  Sum_probs=22.2

Q ss_pred             ccccccccccceeeeCCHHHHHHhhcc
Q 024438          205 AVDSVRVCTVCNIACNGQEAFNDHLSG  231 (267)
Q Consensus       205 ~~~~~~~C~lCnVscnSe~~~~sHL~G  231 (267)
                      +.+..|-|.+|...|..+..|+-|...
T Consensus       352 ss~gi~~C~~C~KkFrRqAYLrKHqlt  378 (500)
T KOG3993|consen  352 SSSGIFSCHTCGKKFRRQAYLRKHQLT  378 (500)
T ss_pred             ccCceeecHHhhhhhHHHHHHHHhHHh
Confidence            345689999999999999999888543

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=80.59  E-value=0.64  Score=43.76  Aligned_cols=81  Identities=19%  Similarity=0.273  Sum_probs=47.3

Q ss_pred             CCCcccccceeeeCCHHHHHHHhCCchhHHHHHhhcCCCccccccccccCCCCCCChhHHHHHHHhhhcCCCcccccccc
Q 024438          133 IQPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCNTINKVSLPSQELEMKRQKLLNGGAAVDSVRVC  212 (267)
Q Consensus       133 ~~~~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~~~~~~~~k~s~Nt~G~~~aP~ed~evkkqklle~~~~~~~~~~C  212 (267)
                      ....-|.||+..|..+..|+-|++.--         ++ ++.   +|...|...+---++..--|     .......|-|
T Consensus       185 ~l~c~C~iCGKaFSRPWLLQGHiRTHT---------GE-KPF---~C~hC~kAFADRSNLRAHmQ-----THS~~K~~qC  246 (279)
T KOG2462|consen  185 TLPCECGICGKAFSRPWLLQGHIRTHT---------GE-KPF---SCPHCGKAFADRSNLRAHMQ-----THSDVKKHQC  246 (279)
T ss_pred             CCCcccccccccccchHHhhccccccc---------CC-CCc---cCCcccchhcchHHHHHHHH-----hhcCCccccC
Confidence            457889999999999999999986321         11 111   12222211111001100000     1122347999


Q ss_pred             ccceeeeCCHHHHHHhhcc
Q 024438          213 TVCNIACNGQEAFNDHLSG  231 (267)
Q Consensus       213 ~lCnVscnSe~~~~sHL~G  231 (267)
                      ..|.++|.-..-|..|+.+
T Consensus       247 ~~C~KsFsl~SyLnKH~ES  265 (279)
T KOG2462|consen  247 PRCGKSFALKSYLNKHSES  265 (279)
T ss_pred             cchhhHHHHHHHHHHhhhh
Confidence            9999999888888877654

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=80.26  E-value=0.33  Score=51.63  Aligned_cols=56  Identities=18%  Similarity=0.409  Sum_probs=44.0

Q ss_pred             CCcccccceeeeCCHHHHHHHhCCchhHHHHHhhcCCCccccccccccCCCCCCChhHHHHHHHhhhcCCCccccccccc
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCNTINKVSLPSQELEMKRQKLLNGGAAVDSVRVCT  213 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~~~~~~~~k~s~Nt~G~~~aP~ed~evkkqklle~~~~~~~~~~C~  213 (267)
                      +.|.|+||+-.|+.+-.|++||.+.|=+--++                                          ..+-|-
T Consensus       632 RPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R------------------------------------------~q~ScP  669 (958)
T KOG1074|consen  632 RPFKCKICGRAFTTKGNLKAHMSVHKAKPPAR------------------------------------------VQFSCP  669 (958)
T ss_pred             CccccccccchhccccchhhcccccccCcccc------------------------------------------ccccCC
Confidence            57999999999999999999998854322211                                          246677


Q ss_pred             ---cceeeeCCHHHHHHhhcc
Q 024438          214 ---VCNIACNGQEAFNDHLSG  231 (267)
Q Consensus       214 ---lCnVscnSe~~~~sHL~G  231 (267)
                         ||...|+....+.+|+++
T Consensus       670 ~~~ic~~kftn~V~lpQhIri  690 (958)
T KOG1074|consen  670 STFICQKKFTNAVTLPQHIRI  690 (958)
T ss_pred             chhhhcccccccccccceEEe
Confidence               888888888888888775

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	267
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	8e-12
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	4e-04

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4 Length = 127

 Score = 60.4 bits (145), Expect = 8e-12
 Identities = 22/134 (16%), Positives = 41/134 (30%), Gaps = 14/134 (10%)

Query: 106 NSSGDSYATSQPLVNNVTQSIPTQ-SKVIQPVRCVVCNIDCNSKDVFQKHISGKKHLRNL 164
           +  G+  A   P+  +   S+  + S +    +C VC+    S+     H   +KH   +
Sbjct: 2   DEFGNGDALDLPVGKDAVNSLIRENSHIFSDTQCKVCSAVLISESQKLAHYQSRKHANKV 61

Query: 165 QNQHNPSAATLKRSCNTINKVSLPSQELEMKRQKLLNGGAAVDSVRVCTVCNIACNGQEA 224
           +                       S   +  +          D  + C VCN+  +    
Sbjct: 62  RRYM-------------AINQGEDSVPAKKFKAAPAEISDGEDRSKCCPVCNMTFSSPVV 108

Query: 225 FNDHLSGKKHAAQV 238
              H  GK H   +
Sbjct: 109 AESHYIGKTHIKNL 122

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4 Length = 127

 Score = 38.4 bits (88), Expect = 4e-04
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 138 CVVCNIDCNSKDVFQKHISGKKHLRNLQNQ 167
           C VCN+  +S  V + H  GK H++NL+ +
Sbjct: 96  CPVCNMTFSSPVVAESHYIGKTHIKNLRLR 125

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	267
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	99.77
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	98.42
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.92
3cw1_L	77	U1 small nuclear ribonucleoprotein C; PRE-mRNA spl	97.51
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.34
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	97.14
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	97.07
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	97.05
3cw1_L	77	U1 small nuclear ribonucleoprotein C; PRE-mRNA spl	97.04
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	96.97
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	96.96
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	96.95
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	96.93
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	96.91
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	96.87
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	96.86
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	96.84
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	96.79
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	96.77
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	96.62
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	96.59
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	96.56
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	96.49
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	96.47
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	96.46
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	96.38
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	96.33
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	96.24
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	96.2
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	96.2
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	96.13
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	96.13
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	96.11
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	96.1
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	96.07
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	95.91
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	95.71
2epa_A	72	Krueppel-like factor 10; transforming growth facto	95.64
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	95.62
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	95.6
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	95.52
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	95.47
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	95.46
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	95.46
4dgw_A	402	PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A	95.41
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	95.38
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	95.37
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	95.11
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	95.09
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	95.03
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	94.8
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	94.79
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	94.44
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	94.43
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	94.37
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	94.35
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	94.08
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	94.04
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	94.02
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	93.97
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	93.84
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	93.66
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	93.54
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	93.53
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	93.37
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	92.89
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	92.86
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	92.74
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	92.72
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	92.54
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	92.47
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	92.29
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	92.03
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	91.97
4dgw_A	402	PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A	91.96
1ard_A	29	Yeast transcription factor ADR1; transcription reg	91.94
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	91.6
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	91.52
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	91.42
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	91.24
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	91.24
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	91.16
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	91.05
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	91.02
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	91.0
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	90.85
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	90.07
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	90.61
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	90.52
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	90.25
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	90.24
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	90.12
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	89.96
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	89.95
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	89.9
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	89.81
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	89.76
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	89.76
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	89.76
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	89.59
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	89.56
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	89.48
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	89.44
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	89.38
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	89.35
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	89.34
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	89.3
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	89.28
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	89.27
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	89.26
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	89.16
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	89.16
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	88.77
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	89.11
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	89.1
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	89.07
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	89.06
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	89.06
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	89.02
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	88.98
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	88.96
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	88.94
1ard_A	29	Yeast transcription factor ADR1; transcription reg	88.91
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	88.89
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	88.88
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	88.87
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	88.85
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	88.82
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	88.79
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	88.77
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	88.76
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	88.75
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	88.72
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	88.71
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	88.71
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	88.68
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	88.68
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	88.67
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	88.64
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	88.63
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	88.63
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	88.6
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	88.6
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	88.55
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	88.54
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	88.49
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	88.46
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	88.44
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	88.41
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	88.39
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	88.37
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	88.36
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	88.32
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	88.29
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	88.24
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	88.0
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	88.18
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	88.18
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	88.17
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	88.15
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	88.12
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	88.11
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	88.11
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	88.1
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	88.08
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	88.07
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	88.02
4f9c_B	144	Protein DBF4 homolog A; Ser/Thr protein kinase, tr	88.01
1paa_A	30	Yeast transcription factor ADR1; transcription reg	88.01
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	87.99
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	87.97
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	87.95
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	87.93
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	87.89
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	87.88
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	87.87
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	87.86
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	87.84
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	87.83
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	87.83
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	87.82
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	87.81
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	87.76
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	87.73
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	87.71
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	87.67
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	87.63
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	87.62
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	87.59
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	87.59
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	87.55
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	87.55
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	87.51
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	87.48
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	87.42
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	87.41
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	87.41
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	87.39
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	87.36
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	87.34
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	87.3
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	87.24
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	87.24
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	87.19
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	87.15
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	86.93
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	86.85
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	86.84
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	86.83
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	86.78
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	86.72
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	86.61
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	86.6
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	86.59
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	86.59
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	86.42
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	86.35
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	86.4
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	86.17
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	85.95
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	85.78
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	85.63
2jvx_A	28	NF-kappa-B essential modulator; CCHC classical zin	85.42
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	85.38
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	85.35
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	85.34
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	85.3
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	85.18
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	85.15
4f9c_B	144	Protein DBF4 homolog A; Ser/Thr protein kinase, tr	85.14
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	85.12
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	85.08
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	84.74
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	84.61
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	84.47
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	84.4
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	84.33
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	84.32
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	84.31
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	84.25
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	84.07
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	84.06
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	84.02
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	84.0
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	83.96
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	83.89
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	83.85
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	83.78
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	83.7
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	83.64
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	83.61
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	83.61
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	83.6
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	83.58
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	83.57
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	83.52
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	83.51
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	83.49
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	83.48
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	83.4
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	83.36
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	83.35
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	83.31
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	83.28
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	83.23
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	83.22
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	83.21
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	83.19
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	83.17
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	83.12
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	83.1
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	83.07
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	83.05
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	83.0
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	82.99
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	82.98
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	82.92
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	82.91
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	82.86
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	83.46
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	82.69
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	82.62
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	82.62
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	82.61
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	82.59
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	82.52
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	82.51
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	82.5
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	82.46
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	82.45
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	82.44
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	82.32
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	82.27
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	82.23
1paa_A	30	Yeast transcription factor ADR1; transcription reg	82.23
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	82.23
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	82.22
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	82.2
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	82.07
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	82.05
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	82.02
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	81.96
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	81.95
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	82.74
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	81.87
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	81.81
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	81.76
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	81.75
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	81.61
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	81.58
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	81.54
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	81.51
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	81.47
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	81.38
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	81.35
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	81.34
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	81.31
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	81.27
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	81.24
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	81.22
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	81.1
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	81.04
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	80.99
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	80.98
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	80.89
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	80.87
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	80.83
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	80.79
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	80.78
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	80.69
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	80.62
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	80.55
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	80.55
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	80.54
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	80.53
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	80.46
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	80.44
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	80.32
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	80.28
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	80.23
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	80.19
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	80.15
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	80.13
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	80.11
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	80.07
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	80.01

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=99.77  E-value=2.3e-19  Score=146.79  Aligned_cols=117  Identities=16%  Similarity=0.259  Sum_probs=79.8

Q ss_pred             CcccCc-cCCCccccCCC-CCCCCCCcccccceeeeCCHHHHHHHhCCchhHHHHHhhcCCC-ccccccccccCCCCCCC
Q 024438          112 YATSQP-LVNNVTQSIPT-QSKVIQPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNPS-AATLKRSCNTINKVSLP  188 (267)
Q Consensus       112 ~st~~p-~~~~~~~~~Pk-~pK~~~~~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~~~~-~~~~k~s~Nt~G~~~aP  188 (267)
                      +.++.| ....++..++. .+.....++|.+|+|.|+|+.+++.||.|++|+++|+.+.... ...+ .......  ..+
T Consensus         7 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~-~~~~~~~--~~~   83 (127)
T 1zu1_A            7 GDALDLPVGKDAVNSLIRENSHIFSDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDS-VPAKKFK--AAP   83 (127)
T ss_dssp             CCCCCCCCSHHHHHHHHHHTTTTBCSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCC-CSCCCCS--CCS
T ss_pred             CccCCcccchHHHhhhhccccccCCCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccC-CCCCccC--CCc
Confidence            555555 33333333343 3566778999999999999999999999999999998754211 0000 0000000  000


Q ss_pred             hhHHHHHHHhhhcCCCccccccccccceeeeCCHHHHHHhhcchhHHHHHHHHh
Q 024438          189 SQELEMKRQKLLNGGAAVDSVRVCTVCNIACNGQEAFNDHLSGKKHAAQVITLL  242 (267)
Q Consensus       189 ~ed~evkkqklle~~~~~~~~~~C~lCnVscnSe~~~~sHL~GKKHkkkvkkl~  242 (267)
                      .           +........++|++|+++|+|+.++++|++||+|++++++++
T Consensus        84 ~-----------~~~~~~~~~~~C~~C~~~f~s~~~~~~H~~gk~H~~~~~~~~  126 (127)
T 1zu1_A           84 A-----------EISDGEDRSKCCPVCNMTFSSPVVAESHYIGKTHIKNLRLRE  126 (127)
T ss_dssp             S-----------CCSSCCCTTTEETTTTEECSSHHHHHHHHTSHHHHHHHHHHH
T ss_pred             c-----------ccccCCCCCeEcCCCCCEeCCHHHHHHHHCCHHHHHHHHHhc
Confidence            0           011233567999999999999999999999999999999873

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=98.42  E-value=1.1e-07  Score=77.36  Aligned_cols=38  Identities=32%  Similarity=0.500  Sum_probs=34.5

Q ss_pred             CCCCCcccccceeeeCCHHHHHHHhCCchhHHHHHhhc
Q 024438          131 KVIQPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQH  168 (267)
Q Consensus       131 K~~~~~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~  168 (267)
                      .....++|+||+++|+|+.++++|+.||+|++++++++
T Consensus        89 ~~~~~~~C~~C~~~f~s~~~~~~H~~gk~H~~~~~~~~  126 (127)
T 1zu1_A           89 GEDRSKCCPVCNMTFSSPVVAESHYIGKTHIKNLRLRE  126 (127)
T ss_dssp             CCCTTTEETTTTEECSSHHHHHHHHTSHHHHHHHHHHH
T ss_pred             CCCCCeEcCCCCCEeCCHHHHHHHHCCHHHHHHHHHhc
Confidence            44678999999999999999999999999999999863

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.92  E-value=7.1e-06  Score=67.13  Aligned_cols=44  Identities=16%  Similarity=0.299  Sum_probs=37.5

Q ss_pred             ccccccccceeeeCCHHHHHHhhcchhHHHHHHHHhhhcCCCCCC
Q 024438          207 DSVRVCTVCNIACNGQEAFNDHLSGKKHAAQVITLLSSLAFSLID  251 (267)
Q Consensus       207 ~~~~~C~lCnVscnSe~~~~sHL~GKKHkkkvkkl~~~~~~s~~~  251 (267)
                      ...|+|..|++.|.+...|..|+++|+|+++++++.+ .++.+.+
T Consensus        48 ekpfyC~~C~K~F~~~~~L~~H~rsK~HKrrvk~l~~-~p~Tq~e   91 (124)
T 1zr9_A           48 GGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSV-EPYSQEE   91 (124)
T ss_dssp             GGCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHTS-CSSCTTT
T ss_pred             CcceEcccCcchhCCHHHHHHHHhhhhhhHHHHHhcc-CCCcHHH
Confidence            3579999999999999999999999999999999863 4445544

>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A

Probab=97.51  E-value=6e-05  Score=56.96  Aligned_cols=33  Identities=24%  Similarity=0.414  Sum_probs=29.1

Q ss_pred             ccccccceeee--CCHHHHHHhhcchhHHHHHHHH
Q 024438          209 VRVCTVCNIAC--NGQEAFNDHLSGKKHAAQVITL  241 (267)
Q Consensus       209 ~~~C~lCnVsc--nSe~~~~sHL~GKKHkkkvkkl  241 (267)
                      .|||+-|++.+  .|....++|++|+||++++++.
T Consensus         3 kYyCdYCd~~lt~Ds~s~Rk~H~~G~kH~~nv~~y   37 (77)
T 3cw1_L            3 KFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDY   37 (77)
T ss_pred             CcccccCCceecCCCHHHHHHHHccHHHHHHHHHH
Confidence            69999999999  5677789999999999999843

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.34  E-value=0.00011  Score=60.16  Aligned_cols=37  Identities=19%  Similarity=0.332  Sum_probs=34.6

Q ss_pred             CCcccccceeeeCCHHHHHHHhCCchhHHHHHhhcCC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNP  170 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~~~  170 (267)
                      ..|+|.+|+..|.+...|..|+.+|+|+++++.+...
T Consensus        49 kpfyC~~C~K~F~~~~~L~~H~rsK~HKrrvk~l~~~   85 (124)
T 1zr9_A           49 GLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSVE   85 (124)
T ss_dssp             GCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHTSC
T ss_pred             cceEcccCcchhCCHHHHHHHHhhhhhhHHHHHhccC
Confidence            5799999999999999999999999999999998753

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.14  E-value=0.00075  Score=47.71  Aligned_cols=54  Identities=17%  Similarity=0.285  Sum_probs=44.1

Q ss_pred             CCCCCcccccceeeeCCHHHHHHHhCCchhHHHHHhhcCCCccccccccccCCCCCCChhHHHHHHHhhhcCCCcccccc
Q 024438          131 KVIQPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCNTINKVSLPSQELEMKRQKLLNGGAAVDSVR  210 (267)
Q Consensus       131 K~~~~~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~~~~~~~~k~s~Nt~G~~~aP~ed~evkkqklle~~~~~~~~~  210 (267)
                      .....+.|.+|+..|.+...|..|+.  .|.        .                                    ...|
T Consensus        14 ~~~~~~~C~~C~~~f~~~~~l~~H~~--~h~--------~------------------------------------~~~~   47 (77)
T 2cot_A           14 RERRRYKCDECGKSFSHSSDLSKHRR--THT--------G------------------------------------EKPY   47 (77)
T ss_dssp             CCSCSSBCSSSCCBCSCHHHHHHHHT--TTC--------C------------------------------------SCSE
T ss_pred             CCCCCEECCCCCcccCCHHHHHHHHH--HcC--------C------------------------------------CcCe
Confidence            33467999999999999999999974  231        0                                    0158


Q ss_pred             ccccceeeeCCHHHHHHhhc
Q 024438          211 VCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       211 ~C~lCnVscnSe~~~~sHL~  230 (267)
                      .|.+|+..|.+...|..|++
T Consensus        48 ~C~~C~~~f~~~~~L~~H~~   67 (77)
T 2cot_A           48 KCDECGKAFIQRSHLIGHHR   67 (77)
T ss_dssp             ECSSSCCEESSHHHHHHHGG
T ss_pred             eCCCCCCccCCHHHHHHHHH
Confidence            89999999999999999985

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.07  E-value=0.00043  Score=48.12  Aligned_cols=51  Identities=24%  Similarity=0.576  Sum_probs=42.3

Q ss_pred             CCcccccceeeeCCHHHHHHHhCCchhHHHHHhhcCCCccccccccccCCCCCCChhHHHHHHHhhhcCCCccccccccc
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCNTINKVSLPSQELEMKRQKLLNGGAAVDSVRVCT  213 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~~~~~~~~k~s~Nt~G~~~aP~ed~evkkqklle~~~~~~~~~~C~  213 (267)
                      +.+.|.+|+..|.+...|..|+.  .|.        .                                    ...|.|.
T Consensus         8 ~~~~C~~C~k~f~~~~~L~~H~~--~H~--------~------------------------------------~~~~~C~   41 (70)
T 1x5w_A            8 HPEKCSECSYSCSSKAALRIHER--IHC--------T------------------------------------DRPFKCN   41 (70)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHG--GGC--------C------------------------------------SCSEECS
T ss_pred             CCeECCCCCcccCCHHHHHHHHH--HcC--------C------------------------------------CCCEeCC
Confidence            56899999999999999999973  232        0                                    0148999


Q ss_pred             cceeeeCCHHHHHHhhc
Q 024438          214 VCNIACNGQEAFNDHLS  230 (267)
Q Consensus       214 lCnVscnSe~~~~sHL~  230 (267)
                      +|+..|.+...|..|++
T Consensus        42 ~C~~~f~~~~~L~~H~~   58 (70)
T 1x5w_A           42 YCSFDTKQPSNLSKHMK   58 (70)
T ss_dssp             SSSCEESSHHHHHHHHH
T ss_pred             CCCCccCCHHHHHHHHH
Confidence            99999999999999974

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.05  E-value=0.00049  Score=48.18  Aligned_cols=51  Identities=20%  Similarity=0.423  Sum_probs=42.4

Q ss_pred             CCcccccceeeeCCHHHHHHHhCCchhHHHHHhhcCCCccccccccccCCCCCCChhHHHHHHHhhhcCCCccccccccc
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCNTINKVSLPSQELEMKRQKLLNGGAAVDSVRVCT  213 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~~~~~~~~k~s~Nt~G~~~aP~ed~evkkqklle~~~~~~~~~~C~  213 (267)
                      +.+.|.+|+..|.....|+.|+.  .|.        .                                    ...|.|.
T Consensus        13 k~~~C~~C~k~f~~~~~L~~H~~--~h~--------~------------------------------------~~~~~C~   46 (72)
T 1x6e_A           13 KPYGCVECGKAFSRSSILVQHQR--VHT--------G------------------------------------EKPYKCL   46 (72)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH--GGG--------C------------------------------------SCCEECS
T ss_pred             CCccCCCCCCccCCHHHHHHHHH--hcC--------C------------------------------------CCCeECC
Confidence            56899999999999999999973  231        0                                    0158999


Q ss_pred             cceeeeCCHHHHHHhhc
Q 024438          214 VCNIACNGQEAFNDHLS  230 (267)
Q Consensus       214 lCnVscnSe~~~~sHL~  230 (267)
                      +|+..|.+...|..|++
T Consensus        47 ~C~~~f~~~~~L~~H~~   63 (72)
T 1x6e_A           47 ECGKAFSQNSGLINHQR   63 (72)
T ss_dssp             SSCCEESSHHHHHHHHH
T ss_pred             CCCcccCCHHHHHHHHH
Confidence            99999999999999974

>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A

Probab=97.04  E-value=0.00035  Score=52.76  Aligned_cols=35  Identities=29%  Similarity=0.469  Sum_probs=30.5

Q ss_pred             CCcccccceeee--CCHHHHHHHhCCchhHHHHHhhc
Q 024438          134 QPVRCVVCNIDC--NSKDVFQKHISGKKHLRNLQNQH  168 (267)
Q Consensus       134 ~~~~C~LCnVsc--tS~~~l~sH~~GKKHqknlk~l~  168 (267)
                      ..+||+-|++.+  .|....++|..|+||+.+++...
T Consensus         2 PkYyCdYCd~~lt~Ds~s~Rk~H~~G~kH~~nv~~yy   38 (77)
T 3cw1_L            2 PKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYY   38 (77)
T ss_pred             CCcccccCCceecCCCHHHHHHHHccHHHHHHHHHHH
Confidence            468999999999  45777899999999999999844

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.97  E-value=0.00062  Score=48.17  Aligned_cols=54  Identities=20%  Similarity=0.481  Sum_probs=43.1

Q ss_pred             CCcccccceeeeCCHHHHHHHhCCchhHHHHHhhcCCCccccccccccCCCCCCChhHHHHHHHhhhcCCCccccccccc
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCNTINKVSLPSQELEMKRQKLLNGGAAVDSVRVCT  213 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~~~~~~~~k~s~Nt~G~~~aP~ed~evkkqklle~~~~~~~~~~C~  213 (267)
                      +.|.|.+|+..|.....|..|+  +.|....     .                                    ...|.|.
T Consensus         6 k~~~C~~C~k~f~~~~~L~~H~--~~h~~~~-----~------------------------------------~~~~~C~   42 (78)
T 2d9h_A            6 SGLQCEICGFTCRQKASLNWHQ--RKHAETV-----A------------------------------------ALRFPCE   42 (78)
T ss_dssp             CCEECSSSCCEESSHHHHHHHH--HHHHHHT-----T------------------------------------TCCEECT
T ss_pred             cCeECCCCCCeeCCHHHHHHHH--HHhhccC-----C------------------------------------CcccCCC
Confidence            5789999999999999999997  3443210     0                                    1258999


Q ss_pred             cceeeeCCHHHHHHhhc
Q 024438          214 VCNIACNGQEAFNDHLS  230 (267)
Q Consensus       214 lCnVscnSe~~~~sHL~  230 (267)
                      +|+..|.+...|..|++
T Consensus        43 ~C~k~f~~~~~L~~H~~   59 (78)
T 2d9h_A           43 FCGKRFEKPDSVAAHRS   59 (78)
T ss_dssp             TTCCEESSHHHHHHHHH
T ss_pred             CCCchhCCHHHHHHHHH
Confidence            99999999999999963

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=96.96  E-value=0.0008  Score=47.38  Aligned_cols=51  Identities=25%  Similarity=0.486  Sum_probs=42.6

Q ss_pred             CCcccccceeeeCCHHHHHHHhCCchhHHHHHhhcCCCccccccccccCCCCCCChhHHHHHHHhhhcCCCccccccccc
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCNTINKVSLPSQELEMKRQKLLNGGAAVDSVRVCT  213 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~~~~~~~~k~s~Nt~G~~~aP~ed~evkkqklle~~~~~~~~~~C~  213 (267)
                      +.+.|.+|+..|.....|..|+.  .|..                                            ...|.|+
T Consensus         3 Kpy~C~~C~k~F~~~~~L~~H~~--~Ht~--------------------------------------------ekp~~C~   36 (60)
T 4gzn_C            3 RPFFCNFCGKTYRDASGLSRHRR--AHLG--------------------------------------------YRPRSCP   36 (60)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHH--HHHT--------------------------------------------CCCEECT
T ss_pred             CCccCCCCCCEeCCHHHHHHHHH--HhCC--------------------------------------------CcCeECC
Confidence            46899999999999999999963  3420                                            1158999


Q ss_pred             cceeeeCCHHHHHHhhc
Q 024438          214 VCNIACNGQEAFNDHLS  230 (267)
Q Consensus       214 lCnVscnSe~~~~sHL~  230 (267)
                      +|+..|+....|..|++
T Consensus        37 ~C~k~F~~~~~L~~H~~   53 (60)
T 4gzn_C           37 ECGKCFRDQSEVNRHLK   53 (60)
T ss_dssp             TTCCEESSHHHHHHHGG
T ss_pred             CCCCCcCCHHHHHHHhC
Confidence            99999999999999985

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=96.95  E-value=0.00061  Score=47.81  Aligned_cols=52  Identities=19%  Similarity=0.416  Sum_probs=42.5

Q ss_pred             CCCcccccceeeeCCHHHHHHHhCCchhHHHHHhhcCCCccccccccccCCCCCCChhHHHHHHHhhhcCCCcccccccc
Q 024438          133 IQPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCNTINKVSLPSQELEMKRQKLLNGGAAVDSVRVC  212 (267)
Q Consensus       133 ~~~~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~~~~~~~~k~s~Nt~G~~~aP~ed~evkkqklle~~~~~~~~~~C  212 (267)
                      ...+.|.+|+..|.+...|..|+.  .|.        .                                    ...|.|
T Consensus        15 ~~~~~C~~C~k~f~~~~~l~~H~~--~H~--------~------------------------------------~~~~~C   48 (74)
T 2lce_A           15 DKPYKCDRCQASFRYKGNLASHKT--VHT--------G------------------------------------EKPYRC   48 (74)
T ss_dssp             CCSBCCTTSSCCBSCHHHHHHHHH--HHC--------C------------------------------------CCSEEC
T ss_pred             CCCeECCCCCceeCCHHHHHHHHH--HcC--------C------------------------------------CCCEEC
Confidence            356899999999999999999963  231        0                                    015899


Q ss_pred             ccceeeeCCHHHHHHhhc
Q 024438          213 TVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       213 ~lCnVscnSe~~~~sHL~  230 (267)
                      .+|+..|.+...|..|++
T Consensus        49 ~~C~k~f~~~~~L~~H~~   66 (74)
T 2lce_A           49 NICGAQFNRPANLKTHTR   66 (74)
T ss_dssp             TTTCCEESCHHHHHHHHH
T ss_pred             CCCCchhCCHHHHHHHHH
Confidence            999999999999999974

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=96.93  E-value=0.00056  Score=45.27  Aligned_cols=51  Identities=24%  Similarity=0.492  Sum_probs=41.2

Q ss_pred             CcccccceeeeCCHHHHHHHhCCchhHHHHHhhcCCCccccccccccCCCCCCChhHHHHHHHhhhcCCCcccccccccc
Q 024438          135 PVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCNTINKVSLPSQELEMKRQKLLNGGAAVDSVRVCTV  214 (267)
Q Consensus       135 ~~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~~~~~~~~k~s~Nt~G~~~aP~ed~evkkqklle~~~~~~~~~~C~l  214 (267)
                      .+.|.+|+..|.+...|..|+.  .|.        .                                    ...|.|.+
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~--~h~--------~------------------------------------~~~~~C~~   34 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIR--THT--------D------------------------------------VRPYHCTY   34 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHH--HTS--------S------------------------------------CCCEECSS
T ss_pred             CCcCCCCcCcCCCHHHHHHHHH--hcC--------C------------------------------------CCCccCCC
Confidence            3679999999999999999952  121        0                                    11588999


Q ss_pred             ceeeeCCHHHHHHhhcc
Q 024438          215 CNIACNGQEAFNDHLSG  231 (267)
Q Consensus       215 CnVscnSe~~~~sHL~G  231 (267)
                      |+..|.+...|..|++.
T Consensus        35 C~~~f~~~~~l~~H~~~   51 (57)
T 1bbo_A           35 CNFSFKTKGNLTKHMKS   51 (57)
T ss_dssp             SSCEESSHHHHHHHHHS
T ss_pred             CCchhcCHHHHHHHHHH
Confidence            99999999999999864

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=96.91  E-value=0.00079  Score=45.08  Aligned_cols=50  Identities=20%  Similarity=0.450  Sum_probs=41.4

Q ss_pred             CcccccceeeeCCHHHHHHHhCCchhHHHHHhhcCCCccccccccccCCCCCCChhHHHHHHHhhhcCCCcccccccccc
Q 024438          135 PVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCNTINKVSLPSQELEMKRQKLLNGGAAVDSVRVCTV  214 (267)
Q Consensus       135 ~~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~~~~~~~~k~s~Nt~G~~~aP~ed~evkkqklle~~~~~~~~~~C~l  214 (267)
                      .+.|.+|+..|.+...|..|+.  .|.        .                                    ...|.|.+
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~--~h~--------~------------------------------------~~~~~C~~   35 (60)
T 2adr_A            2 SFVCEVCTRAFARQEHLKRHYR--SHT--------N------------------------------------EKPYPCGL   35 (60)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHH--TTT--------S------------------------------------SCSEECTT
T ss_pred             cCcCCCCccccCCHHHHHHHHH--HhC--------C------------------------------------CCCccCCC
Confidence            5789999999999999999974  231        0                                    01588999


Q ss_pred             ceeeeCCHHHHHHhhc
Q 024438          215 CNIACNGQEAFNDHLS  230 (267)
Q Consensus       215 CnVscnSe~~~~sHL~  230 (267)
                      |+..|.+...|..|++
T Consensus        36 C~~~f~~~~~l~~H~~   51 (60)
T 2adr_A           36 CNRAFTRRDLLIRHAQ   51 (60)
T ss_dssp             TCCEESSHHHHHHHHT
T ss_pred             CCCccCCHHHHHHHHH
Confidence            9999999999999974

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.87  E-value=0.0007  Score=50.64  Aligned_cols=53  Identities=17%  Similarity=0.295  Sum_probs=43.3

Q ss_pred             CCCcccccceeeeC-CHHHHHHHhCCchhHHHHHhhcCCCccccccccccCCCCCCChhHHHHHHHhhhcCCCccccccc
Q 024438          133 IQPVRCVVCNIDCN-SKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCNTINKVSLPSQELEMKRQKLLNGGAAVDSVRV  211 (267)
Q Consensus       133 ~~~~~C~LCnVsct-S~~~l~sH~~GKKHqknlk~l~~~~~~~~k~s~Nt~G~~~aP~ed~evkkqklle~~~~~~~~~~  211 (267)
                      ...|.|.+|+..|. ....|..|+  +.|....                                           ..|.
T Consensus        22 ~~~~~C~~C~k~f~~~~~~L~~H~--~~h~~~~-------------------------------------------~~~~   56 (98)
T 2gqj_A           22 RGEAVCPTCNVVTRKTLVGLKKHM--EVCQKLQ-------------------------------------------DALK   56 (98)
T ss_dssp             TSCCCCTTTCCCCSSCSHHHHHHH--HHHHHHH-------------------------------------------HHHS
T ss_pred             CCCcCCCCCCCChhhhHHHHHHHH--HHHcCCC-------------------------------------------CCEE
Confidence            35689999999999 999999997  4453210                                           1488


Q ss_pred             cccceeeeCCHHHHHHhhc
Q 024438          212 CTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       212 C~lCnVscnSe~~~~sHL~  230 (267)
                      |++|+..|.+...|..|++
T Consensus        57 C~~C~k~F~~~~~L~~H~~   75 (98)
T 2gqj_A           57 CQHCRKQFKSKAGLNYHTM   75 (98)
T ss_dssp             CSSSCCCCSCHHHHHHHHH
T ss_pred             CCCCCCccCCHHHHHHHHH
Confidence            9999999999999999974

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=96.86  E-value=0.00073  Score=44.69  Aligned_cols=51  Identities=20%  Similarity=0.392  Sum_probs=40.9

Q ss_pred             CCcccccceeeeCCHHHHHHHhCCchhHHHHHhhcCCCccccccccccCCCCCCChhHHHHHHHhhhcCCCccccccccc
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCNTINKVSLPSQELEMKRQKLLNGGAAVDSVRVCT  213 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~~~~~~~~k~s~Nt~G~~~aP~ed~evkkqklle~~~~~~~~~~C~  213 (267)
                      ..+.|.+|+..|.+...|..|+.  .|..                                            ...|.|.
T Consensus         3 ~~~~C~~C~~~f~~~~~l~~H~~--~h~~--------------------------------------------~~~~~C~   36 (57)
T 3uk3_C            3 SSRECSYCGKFFRSNYYLNIHLR--THTG--------------------------------------------EKPYKCE   36 (57)
T ss_dssp             --CBCTTTCCBCSCHHHHHHHHH--HHHC--------------------------------------------CCCEECS
T ss_pred             CCccCCCCcchhCChHHHHHHHH--HcCC--------------------------------------------CCCcCCC
Confidence            46889999999999999999964  2310                                            0148899


Q ss_pred             cceeeeCCHHHHHHhhc
Q 024438          214 VCNIACNGQEAFNDHLS  230 (267)
Q Consensus       214 lCnVscnSe~~~~sHL~  230 (267)
                      +|+..|.+...|..|++
T Consensus        37 ~C~~~f~~~~~l~~H~~   53 (57)
T 3uk3_C           37 FCEYAAAQKTSLRYHLE   53 (57)
T ss_dssp             SSSCEESSHHHHHHHHH
T ss_pred             CCcchhCCHHHHHHHHH
Confidence            99999999999999975

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=96.84  E-value=0.0022  Score=48.09  Aligned_cols=52  Identities=19%  Similarity=0.355  Sum_probs=42.7

Q ss_pred             CCCcccccceeeeCCHHHHHHHhCCchhHHHHHhhcCCCccccccccccCCCCCCChhHHHHHHHhhhcCCCcccccccc
Q 024438          133 IQPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCNTINKVSLPSQELEMKRQKLLNGGAAVDSVRVC  212 (267)
Q Consensus       133 ~~~~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~~~~~~~~k~s~Nt~G~~~aP~ed~evkkqklle~~~~~~~~~~C  212 (267)
                      .+.+.|.+|+..|.+...|..|+.  .|-        .                                    ...|.|
T Consensus        26 ~~~h~C~~Cgk~F~~~~~L~~H~~--~H~--------~------------------------------------~k~~~C   59 (85)
T 2lv2_A           26 AECHLCPVCGESFASKGAQERHLR--LLH--------A------------------------------------AQVFPC   59 (85)
T ss_dssp             CTTEECTTSCCEESSHHHHHHHHH--TTS--------C------------------------------------SSSEEC
T ss_pred             CCCEECCCCCCCcCcHHHHhhhhh--hcc--------C------------------------------------CCccCC
Confidence            456889999999999999999973  231        0                                    015899


Q ss_pred             ccceeeeCCHHHHHHhhc
Q 024438          213 TVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       213 ~lCnVscnSe~~~~sHL~  230 (267)
                      ++|+..|.....|..|++
T Consensus        60 ~~C~k~F~~~~~L~~H~~   77 (85)
T 2lv2_A           60 KYCPATFYSSPGLTRHIN   77 (85)
T ss_dssp             TTSSCEESSHHHHHHHHH
T ss_pred             CCCCCEeCCHHHHHHhCc
Confidence            999999999999999974

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=96.79  E-value=0.0019  Score=47.83  Aligned_cols=82  Identities=13%  Similarity=0.219  Sum_probs=50.0

Q ss_pred             CCCCCcccccceeeeCCHHHHHHHhCCchhHHHHHhhcCCCccccccccccCCCCCCChhHHHHHHHhhhcCCCcccccc
Q 024438          131 KVIQPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCNTINKVSLPSQELEMKRQKLLNGGAAVDSVR  210 (267)
Q Consensus       131 K~~~~~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~~~~~~~~k~s~Nt~G~~~aP~ed~evkkqklle~~~~~~~~~  210 (267)
                      +....+.|.+|+..|.+...|..|+.  .|...        +.   -.|...+.......++..- .+.    ......|
T Consensus        13 ~~~~~~~C~~C~~~f~~~~~l~~H~~--~h~~~--------~~---~~C~~C~~~f~~~~~l~~H-~~~----h~~~~~~   74 (106)
T 2ee8_A           13 KTKKEFICKFCGRHFTKSYNLLIHER--THTDE--------RP---YTCDICHKAFRRQDHLRDH-RYI----HSKEKPF   74 (106)
T ss_dssp             CCCCCCBCSSSCCBCSSHHHHHHHHH--HHCCS--------CC---CBCSSSCCBCSCHHHHHHH-GGG----SCCCCTT
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHH--HcCCC--------CC---cCCCCccchhCCHHHHHHH-HHH----hCCCCCe
Confidence            34467999999999999999999973  33210        00   1132222222222222111 111    1223469


Q ss_pred             ccccceeeeCCHHHHHHhhc
Q 024438          211 VCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       211 ~C~lCnVscnSe~~~~sHL~  230 (267)
                      .|.+|+..|.+...|..|++
T Consensus        75 ~C~~C~~~f~~~~~L~~H~~   94 (106)
T 2ee8_A           75 KCQECGKGFCQSRTLAVHKT   94 (106)
T ss_dssp             SCSSSCCCCSSHHHHHHHHH
T ss_pred             ECCCcCCcccCHHHHHHHHH
Confidence            99999999999999999974

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=96.77  E-value=0.0046  Score=46.18  Aligned_cols=76  Identities=12%  Similarity=0.086  Sum_probs=49.1

Q ss_pred             CCcccccceeeeCCHHHHHHHhCCchhHHHHHhhcCCCccccccccccCCCCCCChhHHHHHHHhhhcCCCccccccccc
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCNTINKVSLPSQELEMKRQKLLNGGAAVDSVRVCT  213 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~~~~~~~~k~s~Nt~G~~~aP~ed~evkkqklle~~~~~~~~~~C~  213 (267)
                      ..+.|.+|+..|.+...|..|+.  .|.+   ..          .|...|.......++..-. ..     .....|.|+
T Consensus        15 ~~~~C~~C~~~f~~~~~l~~H~~--~H~~---~~----------~C~~C~~~f~~~~~l~~H~-~H-----~~~~~~~C~   73 (107)
T 1wjp_A           15 EVYQCRLCNAKLSSLLEQGSHER--LCRN---AA----------VCPYCSLRFFSPELKQEHE-SK-----CEYKKLTCL   73 (107)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHH--HHHH---SB----------CCTTTCCCBSSHHHHHHHH-HH-----CSTGGGEEG
T ss_pred             cCeECCCCCCccCCHHHHHHHHH--HCCC---Cc----------cCCCCCCccCCHHHHHHHH-Hc-----CCCCCccCc
Confidence            46899999999999999999984  3631   11          1222232222222221111 11     223469999


Q ss_pred             cceeeeCCHHHHHHhhc
Q 024438          214 VCNIACNGQEAFNDHLS  230 (267)
Q Consensus       214 lCnVscnSe~~~~sHL~  230 (267)
                      +|+..|.+...|..|++
T Consensus        74 ~C~~~f~~~~~L~~H~~   90 (107)
T 1wjp_A           74 ECMRTFKSSFSIWRHQV   90 (107)
T ss_dssp             GGTEECSSHHHHHHHHH
T ss_pred             cccchhCCHHHHHHHHH
Confidence            99999999999999975

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=96.62  E-value=0.0027  Score=46.08  Aligned_cols=79  Identities=22%  Similarity=0.400  Sum_probs=48.4

Q ss_pred             CCcccccceeeeCCHHHHHHHhCCchhHHHHHhhcCCCccccccccccCCCCCCChhHHHHHHHhhhcCCCccccccccc
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCNTINKVSLPSQELEMKRQKLLNGGAAVDSVRVCT  213 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~~~~~~~~k~s~Nt~G~~~aP~ed~evkkqklle~~~~~~~~~~C~  213 (267)
                      ..+.|.+|+..|.+...|..|+.  .|..       . +.   -.|...+.......++..-.+ .    ......|.|.
T Consensus         7 ~~~~C~~C~~~f~~~~~l~~H~~--~h~~-------~-~~---~~C~~C~~~f~~~~~l~~H~~-~----h~~~~~~~C~   68 (96)
T 2dmd_A            7 GPHKCEVCGKCFSRKDKLKTHMR--CHTG-------V-KP---YKCKTCDYAAADSSSLNKHLR-I----HSDERPFKCQ   68 (96)
T ss_dssp             CCCCBTTTTBCCCCHHHHHHHGG--GCCC-------C-CS---EECSSSCCEESSHHHHHHHHH-H----SCCCCCEECS
T ss_pred             cCeECCCCCCccCCHHHHHHHHH--hcCC-------C-CC---EeCCCCCCccCCHHHHHHHHH-H----hCCCCCccCC
Confidence            46889999999999999999985  3321       0 00   012222221111112211111 1    1223469999


Q ss_pred             cceeeeCCHHHHHHhhc
Q 024438          214 VCNIACNGQEAFNDHLS  230 (267)
Q Consensus       214 lCnVscnSe~~~~sHL~  230 (267)
                      +|+..|.+...|..|++
T Consensus        69 ~C~~~f~~~~~l~~H~~   85 (96)
T 2dmd_A           69 ICPYASRNSSQLTVHLR   85 (96)
T ss_dssp             SSSCEESSHHHHHHHHT
T ss_pred             CCCCccCCHHHHHHHHH
Confidence            99999999999999986

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=96.59  E-value=0.0011  Score=48.13  Aligned_cols=81  Identities=15%  Similarity=0.262  Sum_probs=47.3

Q ss_pred             CCcccccceeeeCCHHHHHHHhCCchhHHHHHhhcCCCccccccccccCCCCCCChhHHHHHHHhhhcCCCccccccccc
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCNTINKVSLPSQELEMKRQKLLNGGAAVDSVRVCT  213 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~~~~~~~~k~s~Nt~G~~~aP~ed~evkkqklle~~~~~~~~~~C~  213 (267)
                      ..+.|.+|+..|.+...|..|+.  .|..       . +.   -.|...+.......++..-.+...   ......|.|.
T Consensus         6 ~~~~C~~C~~~f~~~~~l~~H~~--~h~~-------~-~~---~~C~~C~~~f~~~~~l~~H~~~h~---~~~~~~~~C~   69 (95)
T 2yt9_A            6 SGVACEICGKIFRDVYHLNRHKL--SHSG-------E-KP---YSCPVCGLRFKRKDRMSYHVRSHD---GSVGKPYICQ   69 (95)
T ss_dssp             SCEECSSSCCEESSSHHHHHHHH--HSCS-------S-CS---EECSSSCCEESCHHHHHHHHHHHC---CCCCSSBCCS
T ss_pred             CCeECCCCCCccCChHHHHHHHH--hcCC-------C-CC---CcCCCCCCccCCHHHHHHHHHHhc---CCCCCceECC
Confidence            56889999999999999999874  3321       0 00   012222221111122211111110   1112469999


Q ss_pred             cceeeeCCHHHHHHhhc
Q 024438          214 VCNIACNGQEAFNDHLS  230 (267)
Q Consensus       214 lCnVscnSe~~~~sHL~  230 (267)
                      +|+..|.+...|..|++
T Consensus        70 ~C~~~f~~~~~L~~H~~   86 (95)
T 2yt9_A           70 SCGKGFSRPDHLNGHIK   86 (95)
T ss_dssp             SSCCCBSSHHHHHHHHH
T ss_pred             CccchhCCHHHHHHHHH
Confidence            99999999999999974

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=96.56  E-value=0.00091  Score=47.27  Aligned_cols=53  Identities=21%  Similarity=0.451  Sum_probs=41.8

Q ss_pred             CCcccccceeeeCCHHHHHHHhCCchhHHHHHhhcCCCccccccccccCCCCCCChhHHHHHHHhhhcCCCccccccccc
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCNTINKVSLPSQELEMKRQKLLNGGAAVDSVRVCT  213 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~~~~~~~~k~s~Nt~G~~~aP~ed~evkkqklle~~~~~~~~~~C~  213 (267)
                      +.+.|.+|+..|.....|..|+.- .|        ..                                   ....|.|.
T Consensus        14 k~~~C~~C~k~f~~~~~L~~H~~~-~h--------~~-----------------------------------~~~~~~C~   49 (77)
T 2ct1_A           14 KPYECYICHARFTQSGTMKMHILQ-KH--------TE-----------------------------------NVAKFHCP   49 (77)
T ss_dssp             CSEECTTTCCEESCHHHHHHHHHH-HS--------SS-----------------------------------SCSSEECS
T ss_pred             CCeECCCcCchhCCHHHHHHHHHH-hc--------CC-----------------------------------CCCccCCC
Confidence            568999999999999999999630 01        00                                   00258999


Q ss_pred             cceeeeCCHHHHHHhhc
Q 024438          214 VCNIACNGQEAFNDHLS  230 (267)
Q Consensus       214 lCnVscnSe~~~~sHL~  230 (267)
                      +|+..|.+...|..|++
T Consensus        50 ~C~~~f~~~~~L~~H~~   66 (77)
T 2ct1_A           50 HCDTVIARKSDLGVHLR   66 (77)
T ss_dssp             SSSCEESSHHHHHHHHH
T ss_pred             CCCCccCCHHHHHHHHH
Confidence            99999999999999974

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=96.49  E-value=0.0023  Score=44.84  Aligned_cols=77  Identities=16%  Similarity=0.316  Sum_probs=45.6

Q ss_pred             cccccceeeeCCHHHHHHHhCCchhHHHHHhhcCCCccccccccccCCCCCCChhHHHHHHHhhhcCCCccccccccccc
Q 024438          136 VRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCNTINKVSLPSQELEMKRQKLLNGGAAVDSVRVCTVC  215 (267)
Q Consensus       136 ~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~~~~~~~~k~s~Nt~G~~~aP~ed~evkkqklle~~~~~~~~~~C~lC  215 (267)
                      +.|.+|+..|.+...|..|+.  .|...     ..      -.|...+.......++..-.+..     .....|.|.+|
T Consensus         2 ~~C~~C~~~f~~~~~l~~H~~--~h~~~-----~~------~~C~~C~~~f~~~~~l~~H~~~h-----~~~~~~~C~~C   63 (82)
T 2kmk_A            2 FDCKICGKSFKRSSTLSTHLL--IHSDT-----RP------YPCQYCGKRFHQKSDMKKHTFIH-----TGEKPHKCQVC   63 (82)
T ss_dssp             EECSSSCCEESSHHHHHHHHH--HHHTC-----CC------EECSSSCCEESSHHHHHHHHHHH-----HTCCCEECTTT
T ss_pred             ccCCCCcccccCchhHHHHHH--HcCCC-----CC------eeCCcCChhhCCHHHHHHHHHHh-----cCCCCCcCCCc
Confidence            679999999999999999974  34211     00      01222221111112221111111     11346999999


Q ss_pred             eeeeCCHHHHHHhhc
Q 024438          216 NIACNGQEAFNDHLS  230 (267)
Q Consensus       216 nVscnSe~~~~sHL~  230 (267)
                      +..|.+...|..|++
T Consensus        64 ~~~f~~~~~l~~H~~   78 (82)
T 2kmk_A           64 GKAFSQSSNLITHSR   78 (82)
T ss_dssp             SCEESSHHHHHHHHH
T ss_pred             chhhCChHHHHHHHH
Confidence            999999999999975

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=96.47  E-value=0.0023  Score=45.80  Aligned_cols=79  Identities=15%  Similarity=0.293  Sum_probs=46.3

Q ss_pred             CCcccc--cceeeeCCHHHHHHHhCCchhHHHHHhhcCCCccccccccccCCCCCCChhHHHHHHHhhhcCCCccccccc
Q 024438          134 QPVRCV--VCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCNTINKVSLPSQELEMKRQKLLNGGAAVDSVRV  211 (267)
Q Consensus       134 ~~~~C~--LCnVsctS~~~l~sH~~GKKHqknlk~l~~~~~~~~k~s~Nt~G~~~aP~ed~evkkqklle~~~~~~~~~~  211 (267)
                      ..+.|.  .|+..|.+...|..|+.  .|...      .  .   -.|...|.......++..-.+..     .....|.
T Consensus         3 k~~~C~~~~C~~~f~~~~~l~~H~~--~h~~~------~--~---~~C~~C~~~f~~~~~l~~H~~~h-----~~~~~~~   64 (90)
T 1a1h_A            3 RPYACPVESCDRRFSQSGSLTRHIR--IHTGQ------K--P---FQCRICMRNFSRSDHLTTHIRTH-----TGEKPFA   64 (90)
T ss_dssp             CCEECCSSSCCCEESSHHHHHHHHH--HHHCC------C--C---EECTTTCCEESCHHHHHHHHHHH-----HCCCCEE
T ss_pred             CceECCCCCCCCccCCHHHHHHHHH--HhCCC------C--C---ccCCCCCcccCCHHHHHHHHHHc-----CCCCCcc
Confidence            457887  59999999999998874  33210      0  0   01222222111111221111111     1134689


Q ss_pred             cccceeeeCCHHHHHHhhc
Q 024438          212 CTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       212 C~lCnVscnSe~~~~sHL~  230 (267)
                      |.+|+..|.+...|..|++
T Consensus        65 C~~C~~~f~~~~~l~~H~~   83 (90)
T 1a1h_A           65 CDICGRKFARSDERKRHTK   83 (90)
T ss_dssp             CTTTCCEESSHHHHHHHHG
T ss_pred             CCCCCchhCCHHHHHHHHH
Confidence            9999999999999999986

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=96.46  E-value=0.00094  Score=45.57  Aligned_cols=53  Identities=21%  Similarity=0.394  Sum_probs=41.8

Q ss_pred             CCcccccceeeeCCHHHHHHHhCCchhHHHHHhhcCCCccccccccccCCCCCCChhHHHHHHHhhhcCCCccccccccc
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCNTINKVSLPSQELEMKRQKLLNGGAAVDSVRVCT  213 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~~~~~~~~k~s~Nt~G~~~aP~ed~evkkqklle~~~~~~~~~~C~  213 (267)
                      +.+.|.+|+..|.+...|..|+.-. |.       ..                                    ...|.|.
T Consensus         9 k~~~C~~C~k~f~~~~~l~~H~~~~-H~-------~~------------------------------------~~~~~C~   44 (66)
T 2drp_A            9 HTYRCKVCSRVYTHISNFCRHYVTS-HK-------RN------------------------------------VKVYPCP   44 (66)
T ss_dssp             TEEECTTTCCEESSHHHHHHHHHHH-SS-------SS------------------------------------CCCEECT
T ss_pred             cceECCCCcchhCCHHHHHHHHHHH-cC-------CC------------------------------------CcCeECC
Confidence            5688999999999999999986210 10       00                                    1258999


Q ss_pred             cceeeeCCHHHHHHhhc
Q 024438          214 VCNIACNGQEAFNDHLS  230 (267)
Q Consensus       214 lCnVscnSe~~~~sHL~  230 (267)
                      +|+..|.+...|..|++
T Consensus        45 ~C~k~f~~~~~L~~H~~   61 (66)
T 2drp_A           45 FCFKEFTRKDNMTAHVK   61 (66)
T ss_dssp             TTCCEESCHHHHHHHHH
T ss_pred             CCCCccCCHHHHHHHHH
Confidence            99999999999999975

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=96.38  E-value=0.0026  Score=47.94  Aligned_cols=82  Identities=13%  Similarity=0.251  Sum_probs=47.5

Q ss_pred             CCcccccceeeeCCHHHHHHHhCCchhHHHHHhhcCCCccccccccccCCCCCCChhHHHHHHHhhhcCCCccccccccc
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCNTINKVSLPSQELEMKRQKLLNGGAAVDSVRVCT  213 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~~~~~~~~k~s~Nt~G~~~aP~ed~evkkqklle~~~~~~~~~~C~  213 (267)
                      ..+.|.+|+..|.+...|..|+.-..       ......   .-.|...|.......++..-.+..     .....|.|.
T Consensus        34 ~~~~C~~C~~~f~~~~~l~~H~~~~~-------~~~~~~---~~~C~~C~~~f~~~~~l~~H~~~h-----~~~~~~~C~   98 (124)
T 2dlq_A           34 KPFECPKCGKCYFRKENLLEHEARNC-------MNRSEQ---VFTCSVCQETFRRRMELRLHMVSH-----TGEMPYKCS   98 (124)
T ss_dssp             CSCBCTTTCCBCSSHHHHHHHHHHCC-------CCSCCC---CEECSSSCCEESSHHHHHHHHHHH-----SSSCSEECS
T ss_pred             CCeECCCCCchhcCHHHHHHHHhhhh-------cCCCCC---CeECCCCCCccCCHHHHHHHHHHc-----CCCCCccCC
Confidence            46889999999999999999964110       000000   011222222221222221111111     123469999


Q ss_pred             cceeeeCCHHHHHHhhc
Q 024438          214 VCNIACNGQEAFNDHLS  230 (267)
Q Consensus       214 lCnVscnSe~~~~sHL~  230 (267)
                      +|+..|.+...|..|++
T Consensus        99 ~C~~~f~~~~~l~~H~~  115 (124)
T 2dlq_A           99 SCSQQFMQKKDLQSHMI  115 (124)
T ss_dssp             SSCCEESSHHHHHHHHH
T ss_pred             CccchhCCHHHHHHHHH
Confidence            99999999999999975

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=96.33  E-value=0.0056  Score=45.69  Aligned_cols=87  Identities=17%  Similarity=0.253  Sum_probs=51.6

Q ss_pred             CCcccccceeeeCCHHHHHHHhCCchhHHHHHhhcCCCccccccccccCCCCCCChhHHHHHHHhhhcCCCccccccccc
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCNTINKVSLPSQELEMKRQKLLNGGAAVDSVRVCT  213 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~~~~~~~~k~s~Nt~G~~~aP~ed~evkkqklle~~~~~~~~~~C~  213 (267)
                      +.+.| +|+..|.+...|..|+.  .|...        +.   ..|...+.......++..- .+.    ......|.|.
T Consensus         9 k~~~C-~C~~~f~~~~~l~~H~~--~h~~~--------~~---~~C~~C~~~f~~~~~l~~H-~~~----h~~~~~~~C~   69 (110)
T 2csh_A            9 KLYPC-QCGKSFTHKSQRDRHMS--MHLGL--------RP---YGCGVCGKKFKMKHHLVGH-MKI----HTGIKPYECN   69 (110)
T ss_dssp             CCEEC-TTSCEESSHHHHHHHHH--HHSCC--------CS---EECTTTSCEESSSHHHHHH-HTT----TCCCCCEECS
T ss_pred             CCEec-cCCCccCCHHHHHHHHH--HcCCC--------cC---ccCCCCCcccCCHHHHHHH-HHH----cCCCCCeeCC
Confidence            56899 99999999999999984  33210        00   0122222211111111111 111    1223468999


Q ss_pred             cceeeeCCHHHHHHhhcchhHHHHHHHH
Q 024438          214 VCNIACNGQEAFNDHLSGKKHAAQVITL  241 (267)
Q Consensus       214 lCnVscnSe~~~~sHL~GKKHkkkvkkl  241 (267)
                      +|+..|.+...|..|++  .|.+.....
T Consensus        70 ~C~~~f~~~~~l~~H~~--~~~~~~~~~   95 (110)
T 2csh_A           70 ICAKRFMWRDSFHRHVT--SCTKSYEAA   95 (110)
T ss_dssp             SSCCEESCHHHHHHHHH--HHHHHHHHH
T ss_pred             CCcchhcCHHHHHHHHH--Hccccccch
Confidence            99999999999999985  455555433

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=96.24  E-value=0.0038  Score=43.67  Aligned_cols=23  Identities=13%  Similarity=0.286  Sum_probs=20.9

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..+.|.+|+..|.+...|..|++
T Consensus        28 ~~~~C~~C~~~f~~~~~l~~H~~   50 (82)
T 2kmk_A           28 RPYPCQYCGKRFHQKSDMKKHTF   50 (82)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCeeCCcCChhhCCHHHHHHHHH
Confidence            46899999999999999999974

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=96.20  E-value=0.0022  Score=45.52  Aligned_cols=55  Identities=20%  Similarity=0.478  Sum_probs=41.7

Q ss_pred             CCcccccceeeeCCHHHHHHHhCCchhHHHHHhhcCCCccccccccccCCCCCCChhHHHHHHHhhhcCCCccccccccc
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCNTINKVSLPSQELEMKRQKLLNGGAAVDSVRVCT  213 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~~~~~~~~k~s~Nt~G~~~aP~ed~evkkqklle~~~~~~~~~~C~  213 (267)
                      ..+.|.+|+..|.+...|..|+.-  |.       ...                                 .....|.|.
T Consensus        14 k~~~C~~C~~~f~~~~~l~~H~~~--~~-------~~~---------------------------------~~~~~~~C~   51 (86)
T 1x6h_A           14 KPYACSHCDKTFRQKQLLDMHFKR--YH-------DPN---------------------------------FVPAAFVCS   51 (86)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHH--TT-------CSS---------------------------------CCCCCEECS
T ss_pred             CCCcCCCCCCccCCHHHHHHHHHH--hc-------CCc---------------------------------CCCcceECC
Confidence            568999999999999999988631  10       000                                 001258999


Q ss_pred             cceeeeCCHHHHHHhhc
Q 024438          214 VCNIACNGQEAFNDHLS  230 (267)
Q Consensus       214 lCnVscnSe~~~~sHL~  230 (267)
                      +|+..|.+...|..|++
T Consensus        52 ~C~~~f~~~~~L~~H~~   68 (86)
T 1x6h_A           52 KCGKTFTRRNTMARHAD   68 (86)
T ss_dssp             SSCCEESCHHHHHHHHH
T ss_pred             CCCChhCCHHHHHHHHH
Confidence            99999999999999973

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=96.20  E-value=0.0039  Score=45.06  Aligned_cols=23  Identities=26%  Similarity=0.681  Sum_probs=20.6

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      +.+.|.+|+..|.+...|..|+.
T Consensus         2 k~~~C~~C~k~f~~~~~L~~H~~   24 (88)
T 1llm_C            2 KPFQCRICMRNFSRSDHLTTHIR   24 (88)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHH
T ss_pred             CCCcCCCCCCccCCHHHHHHHHH
Confidence            45889999999999999999974

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=96.13  E-value=0.0024  Score=61.36  Aligned_cols=36  Identities=19%  Similarity=0.431  Sum_probs=31.8

Q ss_pred             ccccccccee------eeCCHHHHHHhhcchhHHHHHHHHhh
Q 024438          208 SVRVCTVCNI------ACNGQEAFNDHLSGKKHAAQVITLLS  243 (267)
Q Consensus       208 ~~~~C~lCnV------scnSe~~~~sHL~GKKHkkkvkkl~~  243 (267)
                      ..+.|++|+.      .+..+.+.+.|++|++|++++++..+
T Consensus       359 ~~~~Ce~C~~~~~~~~~~~ge~~W~~H~ksr~Hk~~~~~~~k  400 (409)
T 3eph_A          359 THYTCNVCRNADGKNVVAIGEKYWKIHLGSRRHKSNLKRNTR  400 (409)
T ss_dssp             CEEEEEEEECTTSCEEEEESHHHHHHHHTSHHHHHHHHHHHH
T ss_pred             cceeCCCCCCCCCCcceEEcHHHHHHHhhhhHHHHHHHHHHH
Confidence            3578999998      89999999999999999999986543

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=96.13  E-value=0.0063  Score=42.15  Aligned_cols=51  Identities=20%  Similarity=0.483  Sum_probs=41.9

Q ss_pred             CCcccc--cceeeeCCHHHHHHHhCCchhHHHHHhhcCCCccccccccccCCCCCCChhHHHHHHHhhhcCCCccccccc
Q 024438          134 QPVRCV--VCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCNTINKVSLPSQELEMKRQKLLNGGAAVDSVRV  211 (267)
Q Consensus       134 ~~~~C~--LCnVsctS~~~l~sH~~GKKHqknlk~l~~~~~~~~k~s~Nt~G~~~aP~ed~evkkqklle~~~~~~~~~~  211 (267)
                      ..+.|.  .|+..|.+...|..|+.  .|..                                            ...|.
T Consensus        18 ~~~~C~~~~C~k~f~~~~~l~~H~~--~h~~--------------------------------------------~~~~~   51 (73)
T 1f2i_G           18 RPYACPVESCDRRFSRSDELTRHIR--IHTG--------------------------------------------QKPFQ   51 (73)
T ss_dssp             CCEECSSTTBCCEESSHHHHHHHHH--HHHC--------------------------------------------CCCEE
T ss_pred             CccCCcCCCCCCccCCHHHHHHHHH--hhCC--------------------------------------------CCCeE
Confidence            569997  59999999999999973  3320                                            01488


Q ss_pred             cccceeeeCCHHHHHHhhc
Q 024438          212 CTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       212 C~lCnVscnSe~~~~sHL~  230 (267)
                      |.+|+..|.+...|..|++
T Consensus        52 C~~C~~~f~~~~~l~~H~~   70 (73)
T 1f2i_G           52 CRICMRNFSRSDHLTTHIR   70 (73)
T ss_dssp             CTTTCCEESCHHHHHHHHT
T ss_pred             CCCCCchhCCHHHHHHHHH
Confidence            9999999999999999985

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=96.11  E-value=0.0032  Score=47.54  Aligned_cols=50  Identities=16%  Similarity=0.366  Sum_probs=40.8

Q ss_pred             CCCcccccceeee-CCHHHHHHHhCCchhHHHHHhhcCCCccccccccccCCCCCCChhHHHHHHHhhhcCCCccccccc
Q 024438          133 IQPVRCVVCNIDC-NSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCNTINKVSLPSQELEMKRQKLLNGGAAVDSVRV  211 (267)
Q Consensus       133 ~~~~~C~LCnVsc-tS~~~l~sH~~GKKHqknlk~l~~~~~~~~k~s~Nt~G~~~aP~ed~evkkqklle~~~~~~~~~~  211 (267)
                      ...+.|.+|+..| .+...|..|+.  .|        ..                                     ..|.
T Consensus        32 ~~~~~C~~C~k~F~~~~~~L~~H~~--~h--------~~-------------------------------------k~~~   64 (96)
T 2ctd_A           32 KGSVSCPTCQAVGRKTIEGLKKHME--NC--------KQ-------------------------------------EMFT   64 (96)
T ss_dssp             TSCEECTTTCSCEESSHHHHHHHHH--HH--------CC-------------------------------------CCCC
T ss_pred             CCCcCCCCCCCCcccCHHHHHHHHH--HH--------CC-------------------------------------CCeE
Confidence            3568999999999 99999998862  22        11                                     1488


Q ss_pred             cccceeeeCCHHHHHHhh
Q 024438          212 CTVCNIACNGQEAFNDHL  229 (267)
Q Consensus       212 C~lCnVscnSe~~~~sHL  229 (267)
                      |++|+..|.+...|..|+
T Consensus        65 C~~Cgk~F~~~~~L~~H~   82 (96)
T 2ctd_A           65 CHHCGKQLRSLAGMKYHV   82 (96)
T ss_dssp             CSSSCCCCSSHHHHHHHH
T ss_pred             CCCCCCeeCCHHHHHHHh
Confidence            999999999999999993

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=96.10  E-value=0.0035  Score=46.44  Aligned_cols=23  Identities=22%  Similarity=0.566  Sum_probs=19.8

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      ..+.|.+|+..|.+...|..|+.
T Consensus        44 ~~~~C~~C~~~f~~~~~l~~H~~   66 (106)
T 2ee8_A           44 RPYTCDICHKAFRRQDHLRDHRY   66 (106)
T ss_dssp             CCCBCSSSCCBCSCHHHHHHHGG
T ss_pred             CCcCCCCccchhCCHHHHHHHHH
Confidence            45889999999999999999964

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=96.07  E-value=0.0031  Score=45.64  Aligned_cols=23  Identities=17%  Similarity=0.501  Sum_probs=20.4

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|.+|+..|.+...|..|++
T Consensus        34 ~~~~C~~C~~~f~~~~~l~~H~~   56 (95)
T 2yt9_A           34 KPYSCPVCGLRFKRKDRMSYHVR   56 (95)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCcCCCCCCccCCHHHHHHHHH
Confidence            46889999999999999999974

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=95.91  E-value=0.0052  Score=47.32  Aligned_cols=22  Identities=27%  Similarity=0.644  Sum_probs=20.2

Q ss_pred             ccccccceeeeCCHHHHHHhhc
Q 024438          209 VRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       209 ~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      .|.|++|+..|.+...|..|++
T Consensus       100 ~~~C~~C~k~f~~~~~l~~H~~  121 (129)
T 2wbt_A          100 TKVCPVCKKEFTSTDSALDHVC  121 (129)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCCCCCCCcccCCHHHHHHHHH
Confidence            5899999999999999999975

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=95.71  E-value=0.0067  Score=45.65  Aligned_cols=82  Identities=20%  Similarity=0.292  Sum_probs=49.6

Q ss_pred             CCcccccceeeeCCHHHHHHHhCCchhHHHHHhhcCCCccccccccccCCCCCCChhHHHHHHHhhhcCCCccccccccc
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCNTINKVSLPSQELEMKRQKLLNGGAAVDSVRVCT  213 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~~~~~~~~k~s~Nt~G~~~aP~ed~evkkqklle~~~~~~~~~~C~  213 (267)
                      ..+.|.+|+..|.+...|..|+.  .|...        +.   -.|...+.......++..-.+..  ........|.|.
T Consensus         6 ~~~~C~~C~~~f~~~~~l~~H~~--~h~~~--------~~---~~C~~C~~~f~~~~~l~~H~~~~--~~~~~~~~~~C~   70 (124)
T 2dlq_A            6 SGVECPTCHKKFLSKYYLKVHNR--KHTGE--------KP---FECPKCGKCYFRKENLLEHEARN--CMNRSEQVFTCS   70 (124)
T ss_dssp             SSCCCTTTCCCCSSHHHHHHHHH--HHSSC--------CS---CBCTTTCCBCSSHHHHHHHHHHC--CCCSCCCCEECS
T ss_pred             CCCCCCCCCCcCCCHHHHHHHHH--hCCCC--------CC---eECCCCCchhcCHHHHHHHHhhh--hcCCCCCCeECC
Confidence            56889999999999999999973  34210        00   11322232222222222111110  001224579999


Q ss_pred             cceeeeCCHHHHHHhhc
Q 024438          214 VCNIACNGQEAFNDHLS  230 (267)
Q Consensus       214 lCnVscnSe~~~~sHL~  230 (267)
                      +|+..|.+...|..|++
T Consensus        71 ~C~~~f~~~~~l~~H~~   87 (124)
T 2dlq_A           71 VCQETFRRRMELRLHMV   87 (124)
T ss_dssp             SSCCEESSHHHHHHHHH
T ss_pred             CCCCccCCHHHHHHHHH
Confidence            99999999999999984

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=95.64  E-value=0.019  Score=39.62  Aligned_cols=54  Identities=15%  Similarity=0.298  Sum_probs=43.1

Q ss_pred             CCCCCccccc--ceeeeCCHHHHHHHhCCchhHHHHHhhcCCCccccccccccCCCCCCChhHHHHHHHhhhcCCCcccc
Q 024438          131 KVIQPVRCVV--CNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCNTINKVSLPSQELEMKRQKLLNGGAAVDS  208 (267)
Q Consensus       131 K~~~~~~C~L--CnVsctS~~~l~sH~~GKKHqknlk~l~~~~~~~~k~s~Nt~G~~~aP~ed~evkkqklle~~~~~~~  208 (267)
                      .....+.|.+  |+..|.....|..|+.  .|.        .                                    ..
T Consensus        13 ~~~~~~~C~~~~C~k~f~~~~~L~~H~~--~H~--------~------------------------------------~~   46 (72)
T 2epa_A           13 SRIRSHICSHPGCGKTYFKSSHLKAHTR--THT--------G------------------------------------EK   46 (72)
T ss_dssp             CCCCCEECSSTTTCCEESSHHHHHHHHH--HHS--------S------------------------------------SC
T ss_pred             cccCceeCCCCCCccccCCHHHHHHHHH--hcC--------C------------------------------------CC
Confidence            3456799999  9999999999999973  331        0                                    01


Q ss_pred             cccccc--ceeeeCCHHHHHHhhc
Q 024438          209 VRVCTV--CNIACNGQEAFNDHLS  230 (267)
Q Consensus       209 ~~~C~l--CnVscnSe~~~~sHL~  230 (267)
                      .|.|.+  |+..|.+...|..|++
T Consensus        47 ~~~C~~~~C~k~f~~~~~l~~H~~   70 (72)
T 2epa_A           47 PFSCSWKGCERRFARSDELSRHRR   70 (72)
T ss_dssp             SEECCCTTCCCEESSHHHHHHHTT
T ss_pred             CccCCCCCCCcccCCHHHHHhHhh
Confidence            588976  9999999999999975

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=95.62  E-value=0.018  Score=40.91  Aligned_cols=81  Identities=16%  Similarity=0.244  Sum_probs=48.3

Q ss_pred             CCCCccccc--ceeeeCCHHHHHHHhCCchhHHHHHhhcCCCccccccccc--cCCCCCCChhHHHHHHHhhhcCCCccc
Q 024438          132 VIQPVRCVV--CNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCN--TINKVSLPSQELEMKRQKLLNGGAAVD  207 (267)
Q Consensus       132 ~~~~~~C~L--CnVsctS~~~l~sH~~GKKHqknlk~l~~~~~~~~k~s~N--t~G~~~aP~ed~evkkqklle~~~~~~  207 (267)
                      ....+.|.+  |+..|.+...|..|+.-  |...        +.   -.|.  ..|.......++..-.+..     ...
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~--h~~~--------~~---~~C~~~~C~~~f~~~~~l~~H~~~h-----~~~   63 (89)
T 2wbs_A            2 RTATHTCDYAGCGKTYTKSSHLKAHLRT--HTGE--------KP---YHCDWDGCGWKFARSDELTRHYRKH-----TGH   63 (89)
T ss_dssp             -CCCEECCSTTTCCEESSHHHHHHHHTT--SCSS--------CC---EECCSTTTCCEESSHHHHHHHHHHH-----HCC
T ss_pred             CCCCeeCCCCCCCCcCCCHHHHHHHHHh--cCCC--------CC---cCCCCCCCCCccCCHHHHHHHHHHc-----CCC
Confidence            346789999  99999999999999862  3210        00   0121  1121111111221111111     113


Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|.+|+..|.+...|..|++
T Consensus        64 ~~~~C~~C~~~f~~~~~l~~H~~   86 (89)
T 2wbs_A           64 RPFQCQKCDRAFSRSDHLALHMK   86 (89)
T ss_dssp             CCEECSSSSCEESSHHHHHHHGG
T ss_pred             CCccCCCCCcccCCHHHHHHHHH
Confidence            46899999999999999999985

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=95.60  E-value=0.0078  Score=48.17  Aligned_cols=79  Identities=14%  Similarity=0.219  Sum_probs=49.4

Q ss_pred             CCcccccceeeeCCHHHHHHHhCCchhHHHHHhhcCCCccccccccccCCCCCCChhHHHHHHHhhhcCCCccccccccc
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCNTINKVSLPSQELEMKRQKLLNGGAAVDSVRVCT  213 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~~~~~~~~k~s~Nt~G~~~aP~ed~evkkqklle~~~~~~~~~~C~  213 (267)
                      ..|.|++|+..|.+...|..|+.  .|..       . ++   -.|...|........+..=.+..     .....|.|+
T Consensus        21 k~y~C~~C~k~F~~~~~L~~H~~--~H~~-------~-k~---~~C~~C~k~F~~~~~L~~H~~~H-----~~~k~~~C~   82 (133)
T 2lt7_A           21 VYYICIVCKRSYVCLTSLRRHFN--IHSW-------E-KK---YPCRYCEKVFPLAEYRTKHEIHH-----TGERRYQCL   82 (133)
T ss_dssp             EEEEETTTCCEESCHHHHHHHHH--HHHC-------C-SC---EECSSSSCEESSHHHHHHHHHHH-----HTCCCEEES
T ss_pred             cCeECCCCCCCcCCHHHHHHHHH--HcCC-------C-CC---eeCCccCeecccccchhhhcccc-----CCCccccCC
Confidence            45899999999999999999973  5631       1 00   01333332222222222111111     113468999


Q ss_pred             cceeeeCCHHHHHHhhc
Q 024438          214 VCNIACNGQEAFNDHLS  230 (267)
Q Consensus       214 lCnVscnSe~~~~sHL~  230 (267)
                      +|+..|.+...|..|++
T Consensus        83 ~C~k~F~~~~~L~~H~~   99 (133)
T 2lt7_A           83 ACGKSFINYQFMSSHIK   99 (133)
T ss_dssp             SSCCEESSHHHHHHHHH
T ss_pred             CCCCCcCCHHHHHHHhH
Confidence            99999999999999974

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=95.52  E-value=0.019  Score=41.60  Aligned_cols=82  Identities=17%  Similarity=0.239  Sum_probs=49.4

Q ss_pred             CCCCCccccc--ceeeeCCHHHHHHHhCCchhHHHHHhhcCCCccccccccc--cCCCCCCChhHHHHHHHhhhcCCCcc
Q 024438          131 KVIQPVRCVV--CNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCN--TINKVSLPSQELEMKRQKLLNGGAAV  206 (267)
Q Consensus       131 K~~~~~~C~L--CnVsctS~~~l~sH~~GKKHqknlk~l~~~~~~~~k~s~N--t~G~~~aP~ed~evkkqklle~~~~~  206 (267)
                      .....+.|.+  |+..|.+...|..|+.  .|...        +.   ..|.  ..+.......++..-.+..     ..
T Consensus        11 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~--~h~~~--------~~---~~C~~~~C~~~f~~~~~l~~H~~~h-----~~   72 (100)
T 2ebt_A           11 EKRRIHYCDYPGCTKVYTKSSHLKAHLR--THTGE--------KP---YKCTWEGCDWRFARSDELTRHYRKH-----TG   72 (100)
T ss_dssp             CSCCCEECCSSSCCCEESCHHHHHHHHH--HHSCC--------CC---EECCSSSCCCEESSHHHHHHHHHHH-----TS
T ss_pred             ccCcceEcCCCCCCCcccCHHHHHHHHH--HhCCC--------CC---eeCCCCCCCCccCCHHHHHHHHHHh-----CC
Confidence            3346789998  9999999999999984  34211        00   0121  1221111122221111111     12


Q ss_pred             ccccccccceeeeCCHHHHHHhhc
Q 024438          207 DSVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       207 ~~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ...|.|.+|+..|.+...|..|++
T Consensus        73 ~~~~~C~~C~~~f~~~~~l~~H~~   96 (100)
T 2ebt_A           73 AKPFQCGVCNRSFSRSDHLALHMK   96 (100)
T ss_dssp             CCSCBCSSSCCBCSSHHHHHHHHH
T ss_pred             CCCeECCCCcCccCCHHHHHHHHH
Confidence            346999999999999999999974

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=95.47  E-value=0.011  Score=44.69  Aligned_cols=78  Identities=17%  Similarity=0.315  Sum_probs=46.5

Q ss_pred             CCcccc--cceeeeCCHHHHHHHhCCchhHHHHHhhcCCCccccccccccCCCCCCChhHHHHHHHhhhcCCCccccccc
Q 024438          134 QPVRCV--VCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCNTINKVSLPSQELEMKRQKLLNGGAAVDSVRV  211 (267)
Q Consensus       134 ~~~~C~--LCnVsctS~~~l~sH~~GKKHqknlk~l~~~~~~~~k~s~Nt~G~~~aP~ed~evkkqklle~~~~~~~~~~  211 (267)
                      ..+.|.  +|+..|.+...|..|+.  .|..  +.          -.|...|.......++..-.+ .    ......|.
T Consensus         4 ~~~~C~~~~C~~~f~~~~~l~~H~~--~h~~--~~----------~~C~~C~~~f~~~~~l~~H~~-~----h~~~~~~~   64 (124)
T 1ubd_C            4 RTIACPHKGCTKMFRDNSAMRKHLH--THGP--RV----------HVCAECGKAFVESSKLKRHQL-V----HTGEKPFQ   64 (124)
T ss_dssp             -CEECCSTTCCCEESSHHHHHHHHG--GGSC--CC----------EECTTTCCEESSHHHHHHHGG-G----TSCCCCEE
T ss_pred             CcccCCCCCCcCccCCHHHHHHHHH--HcCC--CC----------eECCCCCchhCCHHHHHHHHH-H----cCCCCCee
Confidence            467898  89999999999999984  4511  00          012222221111111211111 1    12234689


Q ss_pred             ccc--ceeeeCCHHHHHHhhc
Q 024438          212 CTV--CNIACNGQEAFNDHLS  230 (267)
Q Consensus       212 C~l--CnVscnSe~~~~sHL~  230 (267)
                      |.+  |+..|.+...|..|++
T Consensus        65 C~~~~C~~~f~~~~~l~~H~~   85 (124)
T 1ubd_C           65 CTFEGCGKRFSLDFNLRTHVR   85 (124)
T ss_dssp             CCSTTCCCEESCHHHHHHHHH
T ss_pred             CCCCCCcCccCCHHHHHHHHH
Confidence            986  9999999999999984

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=95.46  E-value=0.012  Score=43.93  Aligned_cols=79  Identities=16%  Similarity=0.325  Sum_probs=47.4

Q ss_pred             CCcccc--cceeeeCCHHHHHHHhCCchhHHHHHhhcCCCccccccccccCCCCCCChhHHHHHHHhhhcCCCccccccc
Q 024438          134 QPVRCV--VCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCNTINKVSLPSQELEMKRQKLLNGGAAVDSVRV  211 (267)
Q Consensus       134 ~~~~C~--LCnVsctS~~~l~sH~~GKKHqknlk~l~~~~~~~~k~s~Nt~G~~~aP~ed~evkkqklle~~~~~~~~~~  211 (267)
                      ..+.|.  +|+..|.+...|..|+.  .|...      .  .   -.|...|.......++..-.+..     .....|.
T Consensus        35 ~~~~C~~~~C~~~f~~~~~l~~H~~--~h~~~------~--~---~~C~~C~~~f~~~~~l~~H~~~h-----~~~~~~~   96 (119)
T 2jp9_A           35 KPYQCDFKDCERRFSRSDQLKRHQR--RHTGV------K--P---FQCKTCQRKFSRSDHLKTHTRTH-----TGEKPFS   96 (119)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHH--HHHCC------C--C---EECTTTCCEESCHHHHHHHHHHH-----HTCCCEE
T ss_pred             CCccCCCCCCcCccCCHHHHHHHHH--HcCCC------C--C---ccCCccCchhCCHHHHHHHHHHh-----cCCCCee
Confidence            458899  79999999999999975  24210      0  0   01222222221222221111111     1134688


Q ss_pred             c--ccceeeeCCHHHHHHhhc
Q 024438          212 C--TVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       212 C--~lCnVscnSe~~~~sHL~  230 (267)
                      |  .+|+..|.+...|..|++
T Consensus        97 C~~~~C~~~f~~~~~L~~H~~  117 (119)
T 2jp9_A           97 CRWPSCQKKFARSDELVRHHN  117 (119)
T ss_dssp             CCSTTCCCEESSHHHHHHHHH
T ss_pred             CCCCCCccccCCHHHHHHHHh
Confidence            9  899999999999999975

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=95.46  E-value=0.0077  Score=44.91  Aligned_cols=23  Identities=17%  Similarity=0.327  Sum_probs=20.3

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|.+|+..|.+...|..|++
T Consensus        36 ~~~~C~~C~~~f~~~~~l~~H~~   58 (110)
T 2csh_A           36 RPYGCGVCGKKFKMKHHLVGHMK   58 (110)
T ss_dssp             CSEECTTTSCEESSSHHHHHHHT
T ss_pred             cCccCCCCCcccCCHHHHHHHHH
Confidence            46889999999999999999986

>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces cerevisiae}

Probab=95.41  E-value=0.0066  Score=58.23  Aligned_cols=34  Identities=24%  Similarity=0.373  Sum_probs=30.9

Q ss_pred             ccccccccceeeeCCHHHHHHhhcchhHHHHHHH
Q 024438          207 DSVRVCTVCNIACNGQEAFNDHLSGKKHAAQVIT  240 (267)
Q Consensus       207 ~~~~~C~lCnVscnSe~~~~sHL~GKKHkkkvkk  240 (267)
                      ...+||..|+..|.++.++..||.||||++.+++
T Consensus       290 ~~~l~C~~c~K~Fs~~~v~~~hL~GKkh~K~~~~  323 (402)
T 4dgw_A          290 AKGIYCPFCSRWFKTSSVFESHLVGKIHKKNESK  323 (402)
T ss_dssp             TTEECBTTTTBCBSSHHHHHTTSSSHHHHHHHHH
T ss_pred             CcCeeehhhhhhhccccccHHHhcccccchhHHH
Confidence            3479999999999999999999999999998754

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=95.38  E-value=0.011  Score=47.20  Aligned_cols=23  Identities=17%  Similarity=0.199  Sum_probs=20.6

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      ..+.|++|+..|.+...|..|+.
T Consensus        49 k~~~C~~C~k~F~~~~~L~~H~~   71 (133)
T 2lt7_A           49 KKYPCRYCEKVFPLAEYRTKHEI   71 (133)
T ss_dssp             SCEECSSSSCEESSHHHHHHHHH
T ss_pred             CCeeCCccCeecccccchhhhcc
Confidence            46889999999999999999973

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=95.37  E-value=0.015  Score=40.65  Aligned_cols=74  Identities=14%  Similarity=0.231  Sum_probs=43.0

Q ss_pred             ccc--ccceeeeCCHHHHHHHhCCchhHHHHHhhcCCCcccccccccc--CCCCCCChhHHHHHHHhhhcCCCccccccc
Q 024438          136 VRC--VVCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCNT--INKVSLPSQELEMKRQKLLNGGAAVDSVRV  211 (267)
Q Consensus       136 ~~C--~LCnVsctS~~~l~sH~~GKKHqknlk~l~~~~~~~~k~s~Nt--~G~~~aP~ed~evkkqklle~~~~~~~~~~  211 (267)
                      +.|  .+|+..|.+...|+.|+  +.|... +..          .|..  .|.......++..-.+..       . .+.
T Consensus         2 ~~C~~~~C~~~f~~~~~l~~H~--~~h~~~-~~~----------~C~~~~C~~~f~~~~~l~~H~~~h-------~-~~~   60 (85)
T 2j7j_A            2 YVCHFENCGKAFKKHNQLKVHQ--FSHTQQ-LPY----------ECPHEGCDKRFSLPSRLKRHEKVH-------A-GYP   60 (85)
T ss_dssp             EECCSTTCCCEESSHHHHHHHH--HHHHTT-CCE----------ECCSTTCCCEESSHHHHHHHHHHH-------H-SEE
T ss_pred             ccCCCCCCCcccCCHHHHHHHH--HHhCCC-CCe----------eCCCCCCcCccCCHHHHHHHHHHh-------C-CCC
Confidence            679  99999999999999997  345321 000          1221  221111112221111111       1 177


Q ss_pred             ccc---ceeeeCCHHHHHHhhc
Q 024438          212 CTV---CNIACNGQEAFNDHLS  230 (267)
Q Consensus       212 C~l---CnVscnSe~~~~sHL~  230 (267)
                      |..   |+..|.+...|..|++
T Consensus        61 C~~~~~C~~~f~~~~~l~~H~~   82 (85)
T 2j7j_A           61 CKKDDSCSFVGKTWTLYLKHVA   82 (85)
T ss_dssp             CCSCSSCCCEESSHHHHHHHHH
T ss_pred             CCCCCCCCCccCCHHHHHHHHH
Confidence            888   8888888888888864

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.11  E-value=0.0099  Score=44.67  Aligned_cols=83  Identities=16%  Similarity=0.271  Sum_probs=46.4

Q ss_pred             CCcccccceeeeCCHHHHHHHhCCchhHHHHHhhcCCCccccccccccCCCCC--CChhHHHHHHHhhhcCCCccccccc
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCNTINKVS--LPSQELEMKRQKLLNGGAAVDSVRV  211 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~~~~~~~~k~s~Nt~G~~~--aP~ed~evkkqklle~~~~~~~~~~  211 (267)
                      ..+.|.+|+..|.+...|..|+.-..|.      ...  .  ...|...|...  ....++    ...+ ........|.
T Consensus        18 ~~~~C~~C~k~f~~~~~L~~H~~~~~h~------~~~--~--~~~C~~C~~~f~f~~~~~l----~~H~-~~H~~~~~~~   82 (115)
T 2dmi_A           18 SKFRCKDCSAAYDTLVELTVHMNETGHY------RDD--N--HETDNNNPKRWSKPRKRSL----LEME-GKEDAQKVLK   82 (115)
T ss_dssp             CSEEBSSSSCEESSHHHHHHHHHHTCCC------BCS--C--CCCCCCCCSCCSSCCCCCC----CCCC-CSCCCCSSCB
T ss_pred             CCEECCccCchhcCHHHHHHHHHHhCcc------ccC--C--CccCCCCCcccccccHHHH----HHHh-hccCCCcceE
Confidence            4689999999999999999998521120      000  0  00011111000  000000    0000 0011234799


Q ss_pred             cccceeeeCCHHHHHHhhcc
Q 024438          212 CTVCNIACNGQEAFNDHLSG  231 (267)
Q Consensus       212 C~lCnVscnSe~~~~sHL~G  231 (267)
                      |++|+..|.+...|..|++-
T Consensus        83 C~~C~k~f~~~~~L~~H~~~  102 (115)
T 2dmi_A           83 CMYCGHSFESLQDLSVHMIK  102 (115)
T ss_dssp             CSSSCCBCSSHHHHHHHHHH
T ss_pred             CCCCCCccCCHHHHHHHHHH
Confidence            99999999999999999753

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=95.09  E-value=0.017  Score=41.09  Aligned_cols=23  Identities=13%  Similarity=0.391  Sum_probs=20.8

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|.+|+..|.+...|..|++
T Consensus        33 ~~~~C~~C~~~f~~~~~l~~H~~   55 (90)
T 1a1h_A           33 KPFQCRICMRNFSRSDHLTTHIR   55 (90)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHH
T ss_pred             CCccCCCCCcccCCHHHHHHHHH
Confidence            46899999999999999999985

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=95.03  E-value=0.017  Score=47.22  Aligned_cols=79  Identities=16%  Similarity=0.305  Sum_probs=48.6

Q ss_pred             CCcccccceeeeCCHHHHHHHhCCchhHHHHHhhcCCCccccccccccCCCCCCChhHHHHHHHhhhcCCCccccccccc
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCNTINKVSLPSQELEMKRQKLLNGGAAVDSVRVCT  213 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~~~~~~~~k~s~Nt~G~~~aP~ed~evkkqklle~~~~~~~~~~C~  213 (267)
                      ..+.|.+|+..|.+...|..|+.  .|..       . +.   -.|...|.......++..-.+..     .....|.|+
T Consensus       104 ~~~~C~~C~~~f~~~~~l~~H~~--~h~~-------~-~~---~~C~~C~~~f~~~~~L~~H~~~H-----~~~~~~~C~  165 (190)
T 2i13_A          104 KPYACPECGKSFSQLAHLRAHQR--THTG-------E-KP---YKCPECGKSFSREDNLHTHQRTH-----TGEKPYKCP  165 (190)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHH--HHHC-------C-CC---EECTTTCCEESCHHHHHHHHHHH-----HCCCCEECT
T ss_pred             CCCcCCCCCCccCCHHHHHHHHH--HhCC-------C-CC---eECCCCCcccCCHHHHHHHHHhc-----CCCCCeECC
Confidence            56899999999999999999973  2321       1 00   01222232222222221111111     123469999


Q ss_pred             cceeeeCCHHHHHHhhc
Q 024438          214 VCNIACNGQEAFNDHLS  230 (267)
Q Consensus       214 lCnVscnSe~~~~sHL~  230 (267)
                      +|+..|.+...|..|++
T Consensus       166 ~C~~~f~~~~~L~~H~~  182 (190)
T 2i13_A          166 ECGKSFSRRDALNVHQR  182 (190)
T ss_dssp             TTCCEESSHHHHHHHHT
T ss_pred             CCCCccCCHHHHHHHHH
Confidence            99999999999999986

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=94.80  E-value=0.017  Score=37.51  Aligned_cols=23  Identities=22%  Similarity=0.470  Sum_probs=20.6

Q ss_pred             ccccccccceeeeCCHHHHHHhh
Q 024438          207 DSVRVCTVCNIACNGQEAFNDHL  229 (267)
Q Consensus       207 ~~~~~C~lCnVscnSe~~~~sHL  229 (267)
                      ...++|+.|+++|++...|..|-
T Consensus         6 ~~~~~C~~C~IsF~~l~ty~aHK   28 (36)
T 1fu9_A            6 VMKKYCSTCDISFNYVKTYLAHK   28 (36)
T ss_dssp             CCCSEETTTTEECSSHHHHHHHH
T ss_pred             cCcCeeccccceehhhHHHhhhh
Confidence            44799999999999999999993

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=94.79  E-value=0.0081  Score=42.42  Aligned_cols=33  Identities=18%  Similarity=0.563  Sum_probs=30.7

Q ss_pred             ccccceeeeCCHHHHHHHhCCchhHHHHHhhcC
Q 024438          137 RCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHN  169 (267)
Q Consensus       137 ~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~~  169 (267)
                      -|.+|+|.++....++.|+..++|..+|+....
T Consensus        15 eC~lC~vkYs~r~slqDHIFs~qHI~~vk~~v~   47 (55)
T 2yrk_A           15 ECTLCGVKYSARLSIRDHIFSKQHISKVRETVG   47 (55)
T ss_dssp             CCTTTTCCCCSSSCHHHHHTSHHHHHHHHHTTC
T ss_pred             cccccCcccccccchhhhhccHHHHHHHHHHHH
Confidence            699999999999999999999999999997544

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=94.44  E-value=0.0071  Score=43.63  Aligned_cols=51  Identities=10%  Similarity=0.133  Sum_probs=41.3

Q ss_pred             CCcccccceeeeCCHHHHHHHhCCchhHHHHHhhcCCCccccccccccCCCCCCChhHHHHHHHhhhcCCCccccccccc
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCNTINKVSLPSQELEMKRQKLLNGGAAVDSVRVCT  213 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~~~~~~~~k~s~Nt~G~~~aP~ed~evkkqklle~~~~~~~~~~C~  213 (267)
                      ..+.|.+|+..|.+...|..|+.-  |-.                                             ..+.|.
T Consensus        30 ~~~~C~~C~k~f~~~~~L~~H~~~--h~~---------------------------------------------~~~~c~   62 (88)
T 1llm_C           30 KPFACDICGRKFARSDERKRHRDI--QHI---------------------------------------------LPILED   62 (88)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHHH--HTH---------------------------------------------HHHHHH
T ss_pred             CCccCCCCCCccCCHHHHHHHHHH--hCC---------------------------------------------CcchHH
Confidence            458999999999999999999631  110                                             147899


Q ss_pred             cceeeeCCHHHHHHhhcc
Q 024438          214 VCNIACNGQEAFNDHLSG  231 (267)
Q Consensus       214 lCnVscnSe~~~~sHL~G  231 (267)
                      .|+..|.+...|+.|++.
T Consensus        63 ~C~~~f~~~~~L~~H~~~   80 (88)
T 1llm_C           63 KVEELLSKNYHLENEVAR   80 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHH
Confidence            999999999999998763

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=94.43  E-value=0.019  Score=40.55  Aligned_cols=33  Identities=24%  Similarity=0.517  Sum_probs=30.9

Q ss_pred             ccccccceeeeCCHHHHHHhhcchhHHHHHHHH
Q 024438          209 VRVCTVCNIACNGQEAFNDHLSGKKHAAQVITL  241 (267)
Q Consensus       209 ~~~C~lCnVscnSe~~~~sHL~GKKHkkkvkkl  241 (267)
                      ...|++|+|.++....++.|+=.+.|..+||++
T Consensus        13 ~~eC~lC~vkYs~r~slqDHIFs~qHI~~vk~~   45 (55)
T 2yrk_A           13 KPECTLCGVKYSARLSIRDHIFSKQHISKVRET   45 (55)
T ss_dssp             CSCCTTTTCCCCSSSCHHHHHTSHHHHHHHHHT
T ss_pred             CccccccCcccccccchhhhhccHHHHHHHHHH
Confidence            468999999999999999999999999999965

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=94.37  E-value=0.029  Score=39.10  Aligned_cols=52  Identities=15%  Similarity=0.387  Sum_probs=40.8

Q ss_pred             CCccccc--ceeeeCCHHHHHHHhCCchhHHHHHhhcCCCccccccccccCCCCCCChhHHHHHHHhhhcCCCccccccc
Q 024438          134 QPVRCVV--CNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCNTINKVSLPSQELEMKRQKLLNGGAAVDSVRV  211 (267)
Q Consensus       134 ~~~~C~L--CnVsctS~~~l~sH~~GKKHqknlk~l~~~~~~~~k~s~Nt~G~~~aP~ed~evkkqklle~~~~~~~~~~  211 (267)
                      ..+.|..  |+..|.+...|..|+.- .|.        .                                    ...|.
T Consensus         6 ~~~~C~~~~C~~~f~~~~~L~~H~~~-~H~--------~------------------------------------~~~~~   40 (79)
T 2dlk_A            6 SGMPCDFPGCGRIFSNRQYLNHHKKY-QHI--------H------------------------------------QKSFS   40 (79)
T ss_dssp             SSEECSSTTTCCEESSHHHHHHHHHH-GGG--------S------------------------------------CCCEE
T ss_pred             CCccCCCCCCcCccCCHHHHHHHHHH-HhC--------C------------------------------------CCCeE
Confidence            4688987  99999999999999631 121        0                                    01588


Q ss_pred             ccc--ceeeeCCHHHHHHhhc
Q 024438          212 CTV--CNIACNGQEAFNDHLS  230 (267)
Q Consensus       212 C~l--CnVscnSe~~~~sHL~  230 (267)
                      |.+  |+..|.+...|..|++
T Consensus        41 C~~~~C~k~f~~~~~L~~H~~   61 (79)
T 2dlk_A           41 CPEPACGKSFNFKKHLKEHMK   61 (79)
T ss_dssp             CSCTTTCCEESSHHHHHHHHH
T ss_pred             CCCCCCcCccCCHHHHHHHHH
Confidence            999  9999999999999985

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=94.35  E-value=0.031  Score=45.63  Aligned_cols=79  Identities=14%  Similarity=0.319  Sum_probs=48.4

Q ss_pred             CCcccccceeeeCCHHHHHHHhCCchhHHHHHhhcCCCccccccccccCCCCCCChhHHHHHHHhhhcCCCccccccccc
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCNTINKVSLPSQELEMKRQKLLNGGAAVDSVRVCT  213 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~~~~~~~~k~s~Nt~G~~~aP~ed~evkkqklle~~~~~~~~~~C~  213 (267)
                      ..+.|.+|+..|.+...|..|+.  .|..       . +.   -.|...|.......++..-.+..     .....|.|.
T Consensus        76 ~~~~C~~C~~~f~~~~~l~~H~~--~h~~-------~-~~---~~C~~C~~~f~~~~~l~~H~~~h-----~~~~~~~C~  137 (190)
T 2i13_A           76 KPYKCPECGKSFSQRANLRAHQR--THTG-------E-KP---YACPECGKSFSQLAHLRAHQRTH-----TGEKPYKCP  137 (190)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHH--HHHT-------C-CC---EECTTTCCEESSHHHHHHHHHHH-----HCCCCEECT
T ss_pred             CCccCcccCCccCCHHHHHHHHH--hcCC-------C-CC---CcCCCCCCccCCHHHHHHHHHHh-----CCCCCeECC
Confidence            46899999999999999999974  2321       0 00   01222222211122221111111     123468999


Q ss_pred             cceeeeCCHHHHHHhhc
Q 024438          214 VCNIACNGQEAFNDHLS  230 (267)
Q Consensus       214 lCnVscnSe~~~~sHL~  230 (267)
                      +|+..|.+...|..|++
T Consensus       138 ~C~~~f~~~~~L~~H~~  154 (190)
T 2i13_A          138 ECGKSFSREDNLHTHQR  154 (190)
T ss_dssp             TTCCEESCHHHHHHHHH
T ss_pred             CCCcccCCHHHHHHHHH
Confidence            99999999999999975

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.08  E-value=0.0073  Score=41.50  Aligned_cols=49  Identities=22%  Similarity=0.453  Sum_probs=39.2

Q ss_pred             CCcccccceeeeCCHHHHHHHhCCchhHHHHHhhcCCCccccccccccCCCCCCChhHHHHHHHhhhcCCCccccccccc
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCNTINKVSLPSQELEMKRQKLLNGGAAVDSVRVCT  213 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~~~~~~~~k~s~Nt~G~~~aP~ed~evkkqklle~~~~~~~~~~C~  213 (267)
                      ..+.|..|+..|. ...|..|+.      .     ..                                    ...|.|+
T Consensus         9 ~~~~C~~C~k~f~-~~~L~~H~~------~-----~~------------------------------------~~p~~C~   40 (66)
T 2eod_A            9 RTQPCTYCTKEFV-FDTIQSHQY------Q-----CP------------------------------------RLPVACP   40 (66)
T ss_dssp             CEEECSSSCCEEE-HHHHHHHHH------H-----CS------------------------------------SSEEECT
T ss_pred             CCeeccccCCccC-HHHHHHHHH------H-----cC------------------------------------CcCccCC
Confidence            4688999999999 999998852      1     11                                    0158899


Q ss_pred             -cceeeeCCHHHHHHhhc
Q 024438          214 -VCNIACNGQEAFNDHLS  230 (267)
Q Consensus       214 -lCnVscnSe~~~~sHL~  230 (267)
                       .|+..|.....|..|++
T Consensus        41 ~~C~k~f~~~~~L~~H~~   58 (66)
T 2eod_A           41 NQCGVGTVAREDLPGHLK   58 (66)
T ss_dssp             TCCSCCEEETTTHHHHHH
T ss_pred             cccCcccccHHHHHHHHH
Confidence             99999999999999974

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=94.04  E-value=0.041  Score=41.51  Aligned_cols=79  Identities=16%  Similarity=0.217  Sum_probs=47.3

Q ss_pred             CCcccccceeeeCCHHHHHHHhCCchhHHHHHhhcCCCccccccccc--cCCCCCCChhHHHHHHHhhhcCCCccccccc
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCN--TINKVSLPSQELEMKRQKLLNGGAAVDSVRV  211 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~~~~~~~~k~s~N--t~G~~~aP~ed~evkkqklle~~~~~~~~~~  211 (267)
                      ..+.|.+|+..|.+...|..|+.  .|..       . +.   -.|.  ..|.......++..-.+..     .....|.
T Consensus        33 ~~~~C~~C~~~f~~~~~l~~H~~--~h~~-------~-~~---~~C~~~~C~~~f~~~~~l~~H~~~h-----~~~~~~~   94 (124)
T 1ubd_C           33 RVHVCAECGKAFVESSKLKRHQL--VHTG-------E-KP---FQCTFEGCGKRFSLDFNLRTHVRIH-----TGDRPYV   94 (124)
T ss_dssp             CCEECTTTCCEESSHHHHHHHGG--GTSC-------C-CC---EECCSTTCCCEESCHHHHHHHHHHH-----HCCCCCC
T ss_pred             CCeECCCCCchhCCHHHHHHHHH--HcCC-------C-CC---eeCCCCCCcCccCCHHHHHHHHHHh-----CCCCceE
Confidence            46899999999999999999975  3321       0 00   0121  1222111112221111111     1234689


Q ss_pred             cc--cceeeeCCHHHHHHhhc
Q 024438          212 CT--VCNIACNGQEAFNDHLS  230 (267)
Q Consensus       212 C~--lCnVscnSe~~~~sHL~  230 (267)
                      |.  .|+..|.+...|..|++
T Consensus        95 C~~~~C~~~f~~~~~L~~H~~  115 (124)
T 1ubd_C           95 CPFDGCNKKFAQSTNLKSHIL  115 (124)
T ss_dssp             CCSTTCCCCCSSTTTTHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHH
Confidence            95  59999999999999975

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=94.02  E-value=0.021  Score=54.82  Aligned_cols=34  Identities=21%  Similarity=0.463  Sum_probs=31.1

Q ss_pred             CCccccccee------eeCCHHHHHHHhCCchhHHHHHhh
Q 024438          134 QPVRCVVCNI------DCNSKDVFQKHISGKKHLRNLQNQ  167 (267)
Q Consensus       134 ~~~~C~LCnV------sctS~~~l~sH~~GKKHqknlk~l  167 (267)
                      ..++|++|+.      .+.++.+-+.|+.|++|++++++.
T Consensus       359 ~~~~Ce~C~~~~~~~~~~~ge~~W~~H~ksr~Hk~~~~~~  398 (409)
T 3eph_A          359 THYTCNVCRNADGKNVVAIGEKYWKIHLGSRRHKSNLKRN  398 (409)
T ss_dssp             CEEEEEEEECTTSCEEEEESHHHHHHHHTSHHHHHHHHHH
T ss_pred             cceeCCCCCCCCCCcceEEcHHHHHHHhhhhHHHHHHHHH
Confidence            4578999998      899999999999999999999874

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=93.97  E-value=0.034  Score=43.78  Aligned_cols=90  Identities=11%  Similarity=0.115  Sum_probs=50.0

Q ss_pred             CCCCcccccceeeeCCHHHHHHHhCCchhHHHHHhhcCCCccccccccccCCCCCCChhHHHHHHHhhhcCCCccccccc
Q 024438          132 VIQPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCNTINKVSLPSQELEMKRQKLLNGGAAVDSVRV  211 (267)
Q Consensus       132 ~~~~~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~~~~~~~~k~s~Nt~G~~~aP~ed~evkkqklle~~~~~~~~~~  211 (267)
                      ....+.|.+|+..|.+...|..|+.- .|............   ...|...+........+..-.+..     .....|.
T Consensus        22 ~~~~~~C~~C~~~f~~~~~L~~H~~~-~H~~~~~~~~~~~~---~~~C~~C~~~f~~~~~l~~H~~~h-----~~~~~~~   92 (155)
T 2rpc_A           22 AQLSRPKKSCDRTFSTMHELVTHVTM-EHVGGPEQNNHVCY---WEECPREGKSFKAKYKLVNHIRVH-----TGEKPFP   92 (155)
T ss_dssp             TCCSSSCCCCCCCBSSHHHHHHHHHT-TTSCCTTCSSCCCC---BTTCTTSSCCCSSHHHHHHHTHHH-----HCCCSEE
T ss_pred             hhcccccccCCcccCCHHHHHHHHHh-hcCCCcccCCcccc---ccCCCCcccccCCHHHHHHHHHhc-----CCCCccc
Confidence            34678899999999999999999753 13211000000000   001332232222222221111111     1234689


Q ss_pred             ccc--ceeeeCCHHHHHHhhc
Q 024438          212 CTV--CNIACNGQEAFNDHLS  230 (267)
Q Consensus       212 C~l--CnVscnSe~~~~sHL~  230 (267)
                      |.+  |+..|.+...|..|++
T Consensus        93 C~~~~C~~~f~~~~~L~~H~~  113 (155)
T 2rpc_A           93 CPFPGCGKIFARSENLKIHKR  113 (155)
T ss_dssp             CSCTTTCCEESCHHHHHHHHT
T ss_pred             CCcCCCCCccCCHHHHHHHHH
Confidence            998  9999999999999986

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.84  E-value=0.027  Score=40.62  Aligned_cols=59  Identities=10%  Similarity=0.141  Sum_probs=40.7

Q ss_pred             CcccccceeeeCCHHHHHHHhCCchhHHHHHhhcCCCccccccccccCCCCCCChhHHHHHHHhhhcCCCcccccccccc
Q 024438          135 PVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCNTINKVSLPSQELEMKRQKLLNGGAAVDSVRVCTV  214 (267)
Q Consensus       135 ~~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~~~~~~~~k~s~Nt~G~~~aP~ed~evkkqklle~~~~~~~~~~C~l  214 (267)
                      .+-|.+|+..|.+...|..|+... |...        +.           .  +               .-.-..|.|.+
T Consensus        25 ~~~C~~C~k~f~~~~~L~~H~~~~-H~~~--------~~-----------~--~---------------~~~c~~~~C~~   67 (95)
T 2ej4_A           25 SRPKKSCDRTFSTMHELVTHVTME-HVGG--------PE-----------Q--N---------------NHVCYWEECPR   67 (95)
T ss_dssp             SSSCCCCCCCCSSHHHHHHHHHHT-TTCC--------TT-----------C--S---------------CCCCCCTTCSS
T ss_pred             CCcccccccccCCHHHHHHHHHHh-ccCC--------CC-----------C--C---------------ccceeccCCCC
Confidence            345999999999999999997321 3210        00           0  0               00001378999


Q ss_pred             ceeeeCCHHHHHHhhc
Q 024438          215 CNIACNGQEAFNDHLS  230 (267)
Q Consensus       215 CnVscnSe~~~~sHL~  230 (267)
                      |+..|.+...|..|++
T Consensus        68 C~k~f~~~~~L~~H~~   83 (95)
T 2ej4_A           68 EGKSFKAKYKLVNHIR   83 (95)
T ss_dssp             TTCCCSSHHHHHHHHH
T ss_pred             CCcccCCHHHHHHHHH
Confidence            9999999999999985

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=93.66  E-value=0.078  Score=36.90  Aligned_cols=22  Identities=18%  Similarity=0.451  Sum_probs=17.3

Q ss_pred             CCccccc--ceeeeCCHHHHHHHh
Q 024438          134 QPVRCVV--CNIDCNSKDVFQKHI  155 (267)
Q Consensus       134 ~~~~C~L--CnVsctS~~~l~sH~  155 (267)
                      +.+.|.+  |+..|.+...|..|+
T Consensus        30 ~~~~C~~~~C~~~f~~~~~l~~H~   53 (85)
T 2j7j_A           30 LPYECPHEGCDKRFSLPSRLKRHE   53 (85)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHH
T ss_pred             CCeeCCCCCCcCccCCHHHHHHHH
Confidence            3477877  888888888888886

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=93.54  E-value=0.024  Score=43.82  Aligned_cols=54  Identities=24%  Similarity=0.519  Sum_probs=40.7

Q ss_pred             CCCcccccceeeeCCHHHHHHHhCCchhHHHHHhhcCCCccccccccccCCCCCCChhHHHHHHHhhhcCCCcccccccc
Q 024438          133 IQPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCNTINKVSLPSQELEMKRQKLLNGGAAVDSVRVC  212 (267)
Q Consensus       133 ~~~~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~~~~~~~~k~s~Nt~G~~~aP~ed~evkkqklle~~~~~~~~~~C  212 (267)
                      .+.+.|.+|+..|.....|..|+.- .|.       +.                                  .....|.|
T Consensus        16 ekpy~C~~Cgk~F~~~~~L~~H~r~-~H~-------~~----------------------------------~~ekpf~C   53 (102)
T 2ghf_A           16 EGGYECKYCTFQTPDLNMFTFHVDS-EHP-------NV----------------------------------VLNSSYVC   53 (102)
T ss_dssp             CSSEECSSCSCEESCHHHHHHHHHH-HCS-------SC----------------------------------CCSCCEEE
T ss_pred             CcCcCCCCCCCccCCHHHHHHHHHh-hCC-------CC----------------------------------CCCCCcCC
Confidence            3568999999999999999988520 110       00                                  00125899


Q ss_pred             ccceeeeCCHHHHHHh
Q 024438          213 TVCNIACNGQEAFNDH  228 (267)
Q Consensus       213 ~lCnVscnSe~~~~sH  228 (267)
                      ++|+..|.+...|..|
T Consensus        54 ~~Cgk~F~~~~~L~~H   69 (102)
T 2ghf_A           54 VECNFLTKRYDALSEH   69 (102)
T ss_dssp             TTTTEEESSTHHHHTH
T ss_pred             CCCCcccCCHHHHHHH
Confidence            9999999999999999

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=93.53  E-value=0.074  Score=39.57  Aligned_cols=79  Identities=19%  Similarity=0.360  Sum_probs=48.8

Q ss_pred             CCccccc--ceeeeCCHHHHHHHhCCchhHHHHHhhcCCCccccccccc--cCCCCCCChhHHHHHHHhhhcCCCccccc
Q 024438          134 QPVRCVV--CNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCN--TINKVSLPSQELEMKRQKLLNGGAAVDSV  209 (267)
Q Consensus       134 ~~~~C~L--CnVsctS~~~l~sH~~GKKHqknlk~l~~~~~~~~k~s~N--t~G~~~aP~ed~evkkqklle~~~~~~~~  209 (267)
                      ..+.|.+  |+..|.+...|..|+.  .|... +    .      -.|.  ..|.......++..-.+..     .....
T Consensus         5 ~~~~C~~~~C~~~f~~~~~l~~H~~--~h~~~-~----~------~~C~~~~C~~~f~~~~~l~~H~~~h-----~~~~~   66 (119)
T 2jp9_A            5 RPFMCAYPGCNKRYFKLSHLQMHSR--KHTGE-K----P------YQCDFKDCERRFSRSDQLKRHQRRH-----TGVKP   66 (119)
T ss_dssp             CCBCCCSTTSCCCBSCHHHHHHHHH--HHHTT-C----C------EECCSTTCCCEESSHHHHHHHHHHH-----HCCCC
T ss_pred             eeeeCCCCCCcchhCCHHHHHHHHH--hhCCC-C----C------ccCCCCCCcCccCCHHHHHHHHHHc-----CCCCC
Confidence            4688998  9999999999999986  45321 0    0      0122  1222111122222111111     12346


Q ss_pred             cccccceeeeCCHHHHHHhhc
Q 024438          210 RVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       210 ~~C~lCnVscnSe~~~~sHL~  230 (267)
                      |.|.+|+..|.+...|..|++
T Consensus        67 ~~C~~C~~~f~~~~~l~~H~~   87 (119)
T 2jp9_A           67 FQCKTCQRKFSRSDHLKTHTR   87 (119)
T ss_dssp             EECTTTCCEESCHHHHHHHHH
T ss_pred             ccCCccCchhCCHHHHHHHHH
Confidence            899999999999999999985

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=93.37  E-value=0.028  Score=37.05  Aligned_cols=22  Identities=27%  Similarity=0.578  Sum_probs=20.2

Q ss_pred             CCcccccceeeeCCHHHHHHHh
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHI  155 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~  155 (267)
                      +.+.|.+|+..|.....|..|+
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~   32 (54)
T 2eps_A           11 KPYICQSCGKGFSRPDHLNGHI   32 (54)
T ss_dssp             CCEECSSSCCEESSHHHHHHHH
T ss_pred             CCeECCCCCcccCCHHHHHHHH
Confidence            4689999999999999999996

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=92.89  E-value=0.089  Score=42.82  Aligned_cols=83  Identities=17%  Similarity=0.280  Sum_probs=49.5

Q ss_pred             CCCCCCccc--ccceeeeCCHHHHHHHhCCchhHHHHHhhcCCCcccccccc--ccCCCCCCChhHHHHHHHhhhcCCCc
Q 024438          130 SKVIQPVRC--VVCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSC--NTINKVSLPSQELEMKRQKLLNGGAA  205 (267)
Q Consensus       130 pK~~~~~~C--~LCnVsctS~~~l~sH~~GKKHqknlk~l~~~~~~~~k~s~--Nt~G~~~aP~ed~evkkqklle~~~~  205 (267)
                      ++..+.+.|  .+|+..|.+...|..|+.  .|...      .  .   -.|  ...|.......++..-.+ .    ..
T Consensus         7 ~~~~~~~~C~~~~C~~~f~~~~~L~~H~~--~h~~~------~--~---~~C~~~~C~~~f~~~~~l~~H~~-~----h~   68 (190)
T 1tf6_A            7 PVVYKRYICSFADCGAAYNKNWKLQAHLC--KHTGE------K--P---FPCKEEGCEKGFTSLHHLTRHSL-T----HT   68 (190)
T ss_dssp             ---CCCCBCSSTTTCCBCSSHHHHHHHHH--HHHCC------C--S---SCCSSTTCCCCCSSHHHHHHHHT-T----TT
T ss_pred             cCCCcceeCCCCCCcchhCCHHHHHHHHH--hcCCC------C--C---ccCCCCCCChhhCCHHHHHHHHH-H----cc
Confidence            555678999  789999999999999984  34311      0  0   013  222322222222211111 1    12


Q ss_pred             cccccccc--cceeeeCCHHHHHHhhc
Q 024438          206 VDSVRVCT--VCNIACNGQEAFNDHLS  230 (267)
Q Consensus       206 ~~~~~~C~--lCnVscnSe~~~~sHL~  230 (267)
                      ....|.|.  +|+..|.+...|..|++
T Consensus        69 ~~~~~~C~~~~C~~~f~~~~~l~~H~~   95 (190)
T 1tf6_A           69 GEKNFTCDSDGCDLRFTTKANMKKHFN   95 (190)
T ss_dssp             TCCCEECCSSSCCCEESCHHHHHHHHH
T ss_pred             CCCceeCCCCCCCCccCCHHHHHHHHH
Confidence            23468999  89999999999999983

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=92.86  E-value=0.059  Score=34.99  Aligned_cols=23  Identities=22%  Similarity=0.488  Sum_probs=20.9

Q ss_pred             CCCcccccceeeeCCHHHHHHHh
Q 024438          133 IQPVRCVVCNIDCNSKDVFQKHI  155 (267)
Q Consensus       133 ~~~~~C~LCnVsctS~~~l~sH~  155 (267)
                      ...++|+.|+|+|++...|..|.
T Consensus         6 ~~~~~C~~C~IsF~~l~ty~aHK   28 (36)
T 1fu9_A            6 VMKKYCSTCDISFNYVKTYLAHK   28 (36)
T ss_dssp             CCCSEETTTTEECSSHHHHHHHH
T ss_pred             cCcCeeccccceehhhHHHhhhh
Confidence            46789999999999999999995

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=92.74  E-value=0.084  Score=41.43  Aligned_cols=78  Identities=15%  Similarity=0.231  Sum_probs=47.3

Q ss_pred             CcccccceeeeCCHHHHHHHhCCchhHHHHHhhcCCCcccccccccc--CCCCCCChhHHHHHHHhhhcCCCcccccccc
Q 024438          135 PVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCNT--INKVSLPSQELEMKRQKLLNGGAAVDSVRVC  212 (267)
Q Consensus       135 ~~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~~~~~~~~k~s~Nt--~G~~~aP~ed~evkkqklle~~~~~~~~~~C  212 (267)
                      .+.|.+|+..|.+...|..|+.  .|...      .  .   -.|..  .|.......++..-.+ .    ......|.|
T Consensus        62 ~~~C~~C~~~f~~~~~l~~H~~--~h~~~------~--~---~~C~~~~C~~~f~~~~~L~~H~~-~----h~~~~~~~C  123 (155)
T 2rpc_A           62 WEECPREGKSFKAKYKLVNHIR--VHTGE------K--P---FPCPFPGCGKIFARSENLKIHKR-T----HTGEKPFKC  123 (155)
T ss_dssp             BTTCTTSSCCCSSHHHHHHHTH--HHHCC------C--S---EECSCTTTCCEESCHHHHHHHHT-T----TCSSCSBCC
T ss_pred             ccCCCCcccccCCHHHHHHHHH--hcCCC------C--c---ccCCcCCCCCccCCHHHHHHHHH-h----hCCCCCccC
Confidence            3689999999999999999985  34210      0  0   01221  2221111112211111 1    122346999


Q ss_pred             cc--ceeeeCCHHHHHHhhc
Q 024438          213 TV--CNIACNGQEAFNDHLS  230 (267)
Q Consensus       213 ~l--CnVscnSe~~~~sHL~  230 (267)
                      .+  |+..|.+...|..|++
T Consensus       124 ~~~~C~k~f~~~~~L~~H~~  143 (155)
T 2rpc_A          124 EFEGCDRRFANSSDRKKHMH  143 (155)
T ss_dssp             SSTTCCCCBSSHHHHHHSST
T ss_pred             CCCCCCCccCCHHHHHHHHH
Confidence            98  9999999999999985

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=92.72  E-value=0.065  Score=29.28  Aligned_cols=21  Identities=19%  Similarity=0.428  Sum_probs=19.5

Q ss_pred             cccccceeeeCCHHHHHHhhc
Q 024438          210 RVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       210 ~~C~lCnVscnSe~~~~sHL~  230 (267)
                      |.|.+|+..|.+...|..|++
T Consensus         2 ~~C~~C~k~f~~~~~l~~H~~   22 (27)
T 1znf_A            2 YKCGLCERSFVEKSALSRHQR   22 (27)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGG
T ss_pred             ccCCCCCCcCCCHHHHHHHHH
Confidence            679999999999999999975

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=92.54  E-value=0.079  Score=29.27  Aligned_cols=22  Identities=18%  Similarity=0.406  Sum_probs=20.2

Q ss_pred             ccccccceeeeCCHHHHHHhhc
Q 024438          209 VRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       209 ~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      .|.|.+|+..|.+...|..|++
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~   24 (28)
T 2kvf_A            3 PYSCSVCGKRFSLKHQMETHYR   24 (28)
T ss_dssp             SEECSSSCCEESCHHHHHHHHT
T ss_pred             CccCCCCCcccCCHHHHHHHHH
Confidence            5789999999999999999975

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=92.47  E-value=0.066  Score=29.54  Aligned_cols=22  Identities=23%  Similarity=0.453  Sum_probs=20.1

Q ss_pred             ccccccceeeeCCHHHHHHhhc
Q 024438          209 VRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       209 ~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      .|.|+.|+..|.+...|..|++
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~   24 (27)
T 2kvh_A            3 PFSCSLCPQRSRDFSAMTKHLR   24 (27)
T ss_dssp             CEECSSSSCEESSHHHHHHHHH
T ss_pred             CccCCCcChhhCCHHHHHHHHH
Confidence            5889999999999999999974

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=92.29  E-value=0.078  Score=29.48  Aligned_cols=22  Identities=18%  Similarity=0.613  Sum_probs=20.2

Q ss_pred             ccccccceeeeCCHHHHHHhhc
Q 024438          209 VRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       209 ~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      .|.|.+|+..|.....|..|++
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~   24 (27)
T 2kvg_A            3 PYRCPLCRAGCPSLASMQAHMR   24 (27)
T ss_dssp             TEEETTTTEEESCHHHHHHHHT
T ss_pred             CcCCCCCCcccCCHHHHHHHHH
Confidence            5889999999999999999975

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=92.03  E-value=0.087  Score=30.61  Aligned_cols=23  Identities=22%  Similarity=0.379  Sum_probs=20.7

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|.+|+..|.+...|..|++
T Consensus         6 k~~~C~~C~k~f~~~~~L~~H~~   28 (35)
T 2elx_A            6 SGYVCALCLKKFVSSIRLRSHIR   28 (35)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCeECCCCcchhCCHHHHHHHHH
Confidence            36899999999999999999975

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=91.97  E-value=0.1  Score=30.45  Aligned_cols=23  Identities=26%  Similarity=0.439  Sum_probs=20.9

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|.+|+..|.+...|..|++
T Consensus         6 k~~~C~~C~k~f~~~~~l~~H~~   28 (35)
T 1srk_A            6 RPFVCRICLSAFTTKANCARHLK   28 (35)
T ss_dssp             SCEECSSSCCEESSHHHHHHHHG
T ss_pred             cCeeCCCCCcccCCHHHHHHHHH
Confidence            36899999999999999999975

>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces cerevisiae}

Probab=91.96  E-value=0.061  Score=51.57  Aligned_cols=36  Identities=25%  Similarity=0.492  Sum_probs=32.2

Q ss_pred             CCCCcccccceeeeCCHHHHHHHhCCchhHHHHHhh
Q 024438          132 VIQPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQ  167 (267)
Q Consensus       132 ~~~~~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l  167 (267)
                      .....||..|+-.|.++.++..|+.||||+++.++.
T Consensus       289 ~~~~l~C~~c~K~Fs~~~v~~~hL~GKkh~K~~~~~  324 (402)
T 4dgw_A          289 EAKGIYCPFCSRWFKTSSVFESHLVGKIHKKNESKR  324 (402)
T ss_dssp             TTTEECBTTTTBCBSSHHHHHTTSSSHHHHHHHHHS
T ss_pred             CCcCeeehhhhhhhccccccHHHhcccccchhHHHH
Confidence            356789999999999999999999999999987653

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=91.94  E-value=0.078  Score=29.28  Aligned_cols=22  Identities=36%  Similarity=0.572  Sum_probs=20.0

Q ss_pred             ccccccceeeeCCHHHHHHhhc
Q 024438          209 VRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       209 ~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      .|.|++|+..|.+...|..|++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~   23 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYR   23 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CeECCCCCcccCCHHHHHHHHH
Confidence            4789999999999999999975

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.60  E-value=0.12  Score=30.45  Aligned_cols=23  Identities=13%  Similarity=0.339  Sum_probs=21.0

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|.+|+..|.....|..|++
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elv_A            8 LLYDCHICERKFKNELDRDRHML   30 (36)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeECCCCCCccCCHHHHHHHHH
Confidence            46899999999999999999975

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=91.52  E-value=0.084  Score=29.23  Aligned_cols=22  Identities=14%  Similarity=0.246  Sum_probs=20.2

Q ss_pred             ccccccceeeeCCHHHHHHhhc
Q 024438          209 VRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       209 ~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      .|.|+.|+..|.+...|..|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~   23 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHIL   23 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHT
T ss_pred             CccCCCCCchhCCHHHHHHHHH
Confidence            4789999999999999999986

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.42  E-value=0.11  Score=30.41  Aligned_cols=23  Identities=13%  Similarity=0.462  Sum_probs=20.8

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|.+|+..|.+...|..|++
T Consensus         8 ~~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elr_A            8 KTHLCDMCGKKFKSKGTLKSHKL   30 (36)
T ss_dssp             SSCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCeecCcCCCCcCchHHHHHHHH
Confidence            46899999999999999999974

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=91.24  E-value=0.1  Score=28.63  Aligned_cols=22  Identities=18%  Similarity=0.354  Sum_probs=19.9

Q ss_pred             ccccccceeeeCCHHHHHHhhc
Q 024438          209 VRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       209 ~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      .|.|.+|+..|.+...|..|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~   23 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLR   23 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHH
T ss_pred             CccCCCCCCccCChhHHHHHHH
Confidence            4789999999999999999974

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=91.24  E-value=0.12  Score=30.51  Aligned_cols=23  Identities=13%  Similarity=0.255  Sum_probs=20.9

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|+.|+..|.....|..|++
T Consensus        10 k~~~C~~C~k~f~~~~~l~~H~~   32 (37)
T 1p7a_A           10 KPFQCPDCDRSFSRSDHLALHRK   32 (37)
T ss_dssp             SSBCCTTTCCCBSSHHHHHHHHG
T ss_pred             CCccCCCCCcccCcHHHHHHHHH
Confidence            46899999999999999999975

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=91.16  E-value=0.19  Score=40.83  Aligned_cols=22  Identities=23%  Similarity=0.564  Sum_probs=17.4

Q ss_pred             CCcccc--cceeeeCCHHHHHHHh
Q 024438          134 QPVRCV--VCNIDCNSKDVFQKHI  155 (267)
Q Consensus       134 ~~~~C~--LCnVsctS~~~l~sH~  155 (267)
                      ..+.|.  +|+..|.+...|..|+
T Consensus        71 ~~~~C~~~~C~~~f~~~~~l~~H~   94 (190)
T 1tf6_A           71 KNFTCDSDGCDLRFTTKANMKKHF   94 (190)
T ss_dssp             CCEECCSSSCCCEESCHHHHHHHH
T ss_pred             CceeCCCCCCCCccCCHHHHHHHH
Confidence            457788  7888888888888886

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.05  E-value=0.11  Score=30.43  Aligned_cols=23  Identities=26%  Similarity=0.410  Sum_probs=20.8

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|.+|+..|.....|..|++
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elt_A            8 KPYKCPQCSYASAIKANLNVHLR   30 (36)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHH
T ss_pred             CCCCCCCCCcccCCHHHHHHHHH
Confidence            36899999999999999999974

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=91.02  E-value=0.12  Score=28.47  Aligned_cols=22  Identities=18%  Similarity=0.324  Sum_probs=20.0

Q ss_pred             ccccccceeeeCCHHHHHHhhc
Q 024438          209 VRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       209 ~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      .|.|..|+..|.....|..|++
T Consensus         3 ~~~C~~C~~~f~~~~~l~~H~~   24 (30)
T 2m0d_A            3 PYQCDYCGRSFSDPTSKMRHLE   24 (30)
T ss_dssp             CEECTTTCCEESCHHHHHHHHH
T ss_pred             CccCCCCCcccCCHHHHHHHHH
Confidence            5889999999999999999974

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.00  E-value=0.13  Score=30.33  Aligned_cols=23  Identities=17%  Similarity=0.524  Sum_probs=20.8

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|.+|+..|.+...|..|++
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elq_A            8 KPFKCSLCEYATRSKSNLKAHMN   30 (36)
T ss_dssp             CSEECSSSSCEESCHHHHHHHHH
T ss_pred             CCccCCCCCchhCCHHHHHHHHH
Confidence            46899999999999999999974

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.85  E-value=0.13  Score=30.26  Aligned_cols=23  Identities=22%  Similarity=0.488  Sum_probs=20.8

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|.+|+..|.....|..|++
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2els_A            8 KIFTCEYCNKVFKFKHSLQAHLR   30 (36)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHH
T ss_pred             CCEECCCCCceeCCHHHHHHHHH
Confidence            46899999999999999999975

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=90.07  E-value=0.047  Score=29.90  Aligned_cols=22  Identities=18%  Similarity=0.412  Sum_probs=19.9

Q ss_pred             ccccccceeeeCCHHHHHHhhc
Q 024438          209 VRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       209 ~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      .|.|++|+..|.....|..|++
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~   23 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIR   23 (26)
Confidence            4789999999999999999975

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=90.61  E-value=0.046  Score=42.77  Aligned_cols=80  Identities=14%  Similarity=0.389  Sum_probs=46.9

Q ss_pred             CCccccc--ceeeeCCHHHHHHHhCCchhHHHHHhhcCCCcccccccccc--CCCCCCChhHHHHHHHhhhcCCCccccc
Q 024438          134 QPVRCVV--CNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCNT--INKVSLPSQELEMKRQKLLNGGAAVDSV  209 (267)
Q Consensus       134 ~~~~C~L--CnVsctS~~~l~sH~~GKKHqknlk~l~~~~~~~~k~s~Nt--~G~~~aP~ed~evkkqklle~~~~~~~~  209 (267)
                      ..+.|.+  |+..|.+...|..|+.  .|...        +.   -.|..  .|.......++..-.++.    -.....
T Consensus        66 ~~~~C~~~~C~~~f~~~~~l~~H~~--~h~~~--------~~---~~C~~~~C~~~f~~~~~L~~H~~~~----H~~~~~  128 (155)
T 2gli_A           66 KPHKCTFEGCRKSYSRLENLKTHLR--SHTGE--------KP---YMCEHEGCSKAFSNASDRAKHQNRT----HSNEKP  128 (155)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHH--HTTTC--------CC---EECCSTTCCCEESSSSTTHHHHHHT----TCSCCC
T ss_pred             CCccCCCCCCCCcccCHHHHHHHHH--HcCCC--------CC---eeCCCCCCCCccCCHHHHHHHHHHh----cCCCCC
Confidence            4588986  9999999999999984  34211        00   01211  111111111111111111    122346


Q ss_pred             ccccc--ceeeeCCHHHHHHhhc
Q 024438          210 RVCTV--CNIACNGQEAFNDHLS  230 (267)
Q Consensus       210 ~~C~l--CnVscnSe~~~~sHL~  230 (267)
                      |.|.+  |+..|.+...|..|++
T Consensus       129 ~~C~~~~C~~~f~~~~~L~~H~~  151 (155)
T 2gli_A          129 YVCKLPGCTKRYTDPSSLRKHVK  151 (155)
T ss_dssp             EECCSTTTCCEESSHHHHHHHHH
T ss_pred             eeCCCCCCccccCCHHHHHHHHH
Confidence            99999  9999999999999975

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=90.52  E-value=0.15  Score=30.82  Aligned_cols=23  Identities=17%  Similarity=0.522  Sum_probs=20.7

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus         5 k~~~C~~C~k~f~~~~~L~~H~~   27 (39)
T 1njq_A            5 RSYTCSFCKREFRSAQALGGHMN   27 (39)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHH
T ss_pred             CceECCCCCcccCCHHHHHHHHH
Confidence            36899999999999999999975

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.25  E-value=0.19  Score=30.71  Aligned_cols=23  Identities=17%  Similarity=0.462  Sum_probs=21.1

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        10 k~~~C~~C~k~f~~~~~L~~H~~   32 (42)
T 2eos_A           10 KPYPCEICGTRFRHLQTLKSHLR   32 (42)
T ss_dssp             CCBCCSSSCCCBSSHHHHHHHTT
T ss_pred             CCEECCCCCCccCCHHHHHHHHH
Confidence            46899999999999999999976

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.24  E-value=0.19  Score=31.56  Aligned_cols=23  Identities=26%  Similarity=0.359  Sum_probs=21.2

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eon_A           11 KPYKCQVCGKAFRVSSHLVQHHS   33 (46)
T ss_dssp             CSCBCSSSCCBCSSHHHHHHHTT
T ss_pred             cccCCCCCCcccCcHHHHHHHHH
Confidence            46899999999999999999985

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.12  E-value=0.15  Score=30.11  Aligned_cols=23  Identities=17%  Similarity=0.479  Sum_probs=20.8

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|.+|+..|.+...|..|++
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~   30 (37)
T 2elo_A            8 RSYSCPVCEKSFSEDRLIKSHIK   30 (37)
T ss_dssp             CCCEETTTTEECSSHHHHHHHHH
T ss_pred             CCcCCCCCCCccCCHHHHHHHHH
Confidence            36899999999999999999975

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=89.96  E-value=0.14  Score=30.00  Aligned_cols=22  Identities=14%  Similarity=0.374  Sum_probs=20.0

Q ss_pred             ccccccceeeeCCHHHHHHhhc
Q 024438          209 VRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       209 ~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      .|.|++|+..|.+...|..|++
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~   23 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHIT   23 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHH
T ss_pred             cccCCCCCchhCCHHHHHHHHH
Confidence            4789999999999999999974

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=89.95  E-value=0.23  Score=27.27  Aligned_cols=23  Identities=26%  Similarity=0.577  Sum_probs=20.6

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      +.+.|.+|+..|.....|..|..
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~   24 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKHQMETHYR   24 (28)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHT
T ss_pred             cCccCCCCCcccCCHHHHHHHHH
Confidence            35789999999999999999975

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=89.90  E-value=0.2  Score=30.46  Aligned_cols=23  Identities=22%  Similarity=0.416  Sum_probs=20.9

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|.+|+..|.+...|..|++
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~   31 (42)
T 2el5_A            9 NPYECSECGKAFNRKDQLISHQR   31 (42)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHG
T ss_pred             CCccCCCcChhhCCHHHHHHHHH
Confidence            46899999999999999999975

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.81  E-value=0.21  Score=31.13  Aligned_cols=23  Identities=13%  Similarity=0.281  Sum_probs=21.1

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2emg_A           11 NPFICSECGKVFTHKTNLIIHQK   33 (46)
T ss_dssp             CSCBCTTTCCBCSSHHHHHHHHT
T ss_pred             CCEECCccCcccCCHHHHHHHHH
Confidence            46899999999999999999985

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.76  E-value=0.22  Score=30.23  Aligned_cols=23  Identities=17%  Similarity=0.317  Sum_probs=21.0

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~   31 (41)
T 2ept_A            9 RVYECQECGKSFRQKGSLTLHER   31 (41)
T ss_dssp             CCEECSSSCCEESSHHHHHHHGG
T ss_pred             CCeECCCCCCCcCCHHHHHHHHH
Confidence            46899999999999999999975

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.76  E-value=0.19  Score=30.56  Aligned_cols=23  Identities=13%  Similarity=0.325  Sum_probs=20.7

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~   31 (42)
T 2yte_A            9 KPYSCAECKETFSDNNRLVQHQK   31 (42)
T ss_dssp             CSCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCeECCCCCCccCCHHHHHHHHH
Confidence            46899999999999999999974

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=89.76  E-value=0.22  Score=31.37  Aligned_cols=22  Identities=23%  Similarity=0.490  Sum_probs=20.5

Q ss_pred             cccccccceeeeCCHHHHHHhh
Q 024438          208 SVRVCTVCNIACNGQEAFNDHL  229 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL  229 (267)
                      ..|.|+.|+..|.+...|..|+
T Consensus         7 kp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            7 ARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CCCEETTTTEECSCHHHHHHHH
T ss_pred             cCeECCCCCCccCCHhHccCcC
Confidence            4799999999999999999997

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.59  E-value=0.22  Score=30.91  Aligned_cols=23  Identities=17%  Similarity=0.134  Sum_probs=21.0

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.....|..|++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (44)
T 2epv_A           11 KPYECNECGKAFIWKSLLIVHER   33 (44)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHG
T ss_pred             cCeECCCCCcccCchHHHHHHHh
Confidence            46899999999999999999975

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=89.56  E-value=0.2  Score=30.45  Aligned_cols=23  Identities=13%  Similarity=0.335  Sum_probs=20.8

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        10 ~~~~C~~C~k~f~~~~~l~~H~~   32 (42)
T 2epc_A           10 TPYLCGQCGKSFTQRGSLAVHQR   32 (42)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCeECCCCCcccCCHHHHHHHhh
Confidence            46899999999999999999974

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.48  E-value=0.24  Score=30.94  Aligned_cols=23  Identities=22%  Similarity=0.330  Sum_probs=21.1

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emf_A           11 KHFECTECGKAFTRKSTLSMHQK   33 (46)
T ss_dssp             CCEECSSSCCEESCHHHHHHHGG
T ss_pred             CCeECCCCCchhCCHHHHHHHHH
Confidence            46899999999999999999985

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.44  E-value=0.23  Score=30.94  Aligned_cols=23  Identities=17%  Similarity=0.313  Sum_probs=21.0

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ep3_A           11 KPYRCAECGKAFTDRSNLFTHQK   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeECCCCCchhCCHHHHHHHHH
Confidence            46899999999999999999975

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.38  E-value=0.21  Score=31.08  Aligned_cols=23  Identities=17%  Similarity=0.299  Sum_probs=21.0

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.....|..|++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (45)
T 2epu_A           11 KPFECTHCGKSFRAKGNLVTHQR   33 (45)
T ss_dssp             CSEEETTTTEEESSHHHHHHHHT
T ss_pred             cCccCCCCCCccCChHHHHHHHH
Confidence            46899999999999999999975

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=89.35  E-value=0.19  Score=32.10  Aligned_cols=22  Identities=27%  Similarity=0.359  Sum_probs=20.5

Q ss_pred             CcccccceeeeCCHHHHHHHhC
Q 024438          135 PVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       135 ~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      -|.|.+|.+.|.+..+|..||.
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye   26 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYE   26 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHH
T ss_pred             ccCCcHHHHHcCCHHHHHHHHH
Confidence            4899999999999999999993

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.34  E-value=0.24  Score=30.74  Aligned_cols=23  Identities=17%  Similarity=0.378  Sum_probs=21.1

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yts_A           11 KPYICNECGKSFIQKSHLNRHRR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHGG
T ss_pred             cCEECCCCChhhCChHHHHHHHH
Confidence            46899999999999999999975

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.30  E-value=0.23  Score=30.41  Aligned_cols=23  Identities=22%  Similarity=0.313  Sum_probs=21.0

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2en7_A           11 KPYVCNECGKAFRSKSYLIIHTR   33 (44)
T ss_dssp             SSSCCTTTCCCCSSHHHHHHHHT
T ss_pred             cCeECCCCCCccCCHHHHHHHhh
Confidence            46899999999999999999985

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.28  E-value=0.25  Score=30.79  Aligned_cols=23  Identities=13%  Similarity=0.252  Sum_probs=21.0

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2enf_A           11 KPYKCNECGKVFTQNSHLVRHRG   33 (46)
T ss_dssp             CSCBCSSSCCBCSSHHHHHHHHT
T ss_pred             cCeECCCCCcccCCHHHHHHHHH
Confidence            46899999999999999999975

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.27  E-value=0.21  Score=31.22  Aligned_cols=23  Identities=13%  Similarity=0.319  Sum_probs=20.9

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2en9_A           11 KLFKCNECKKTFTQSSSLTVHQR   33 (46)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCEECCccCcccCCHHHHHHHHH
Confidence            46899999999999999999975

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=89.26  E-value=0.25  Score=27.23  Aligned_cols=23  Identities=35%  Similarity=0.800  Sum_probs=20.6

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      +.+.|.+|+..|.....|..|+.
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~   24 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMR   24 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHT
T ss_pred             cCcCCCCCCcccCCHHHHHHHHH
Confidence            35789999999999999999974

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.16  E-value=0.25  Score=30.79  Aligned_cols=23  Identities=17%  Similarity=0.280  Sum_probs=21.0

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emi_A           11 RHYECSECGKAFIQKSTLSMHQR   33 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHG
T ss_pred             CCCCCCCCCcccCCHHHHHHHHh
Confidence            46899999999999999999975

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=89.16  E-value=0.18  Score=32.37  Aligned_cols=23  Identities=13%  Similarity=0.433  Sum_probs=20.9

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|.+|+..|.....|..|++
T Consensus         6 kp~~C~~C~k~F~~~~~L~~H~~   28 (48)
T 3iuf_A            6 KPYACDICGKRYKNRPGLSYHYA   28 (48)
T ss_dssp             SCEECTTTCCEESSHHHHHHHHH
T ss_pred             cCEECCCcCcccCCHHHHHHHhh
Confidence            36899999999999999999975

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=88.77  E-value=0.073  Score=29.67  Aligned_cols=22  Identities=18%  Similarity=0.397  Sum_probs=19.9

Q ss_pred             ccccccceeeeCCHHHHHHhhc
Q 024438          209 VRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       209 ~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      .|.|++|+..|.....|..|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~   23 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVR   23 (29)
Confidence            4789999999999999999975

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.11  E-value=0.25  Score=30.75  Aligned_cols=23  Identities=22%  Similarity=0.319  Sum_probs=21.1

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2epz_A           11 KPFDCIDCGKAFSDHIGLNQHRR   33 (46)
T ss_dssp             CSBCCTTTCCCBSSHHHHHHHHT
T ss_pred             CCeECCCCCceeCCHHHHHHHHH
Confidence            46999999999999999999985

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.10  E-value=0.22  Score=31.06  Aligned_cols=23  Identities=22%  Similarity=0.418  Sum_probs=20.8

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2em3_A           11 KPYECKVCSKAFTQKAHLAQHQK   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             cCeECCCCCcccCCHHHHHHHHH
Confidence            46899999999999999999974

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.07  E-value=0.23  Score=30.55  Aligned_cols=23  Identities=13%  Similarity=0.325  Sum_probs=21.0

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.....|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2eoj_A           11 NPYECCECGKVFSRKDQLVSHQK   33 (44)
T ss_dssp             CSCEETTTTEECSSHHHHHHHHT
T ss_pred             cCeeCCCCCCccCCHHHHHHHHH
Confidence            46899999999999999999975

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.06  E-value=0.25  Score=30.64  Aligned_cols=23  Identities=17%  Similarity=0.319  Sum_probs=21.0

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|.+|+..|.+...|..|++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yrj_A           11 KPYRCGECGKAFAQKANLTQHQR   33 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeECCCCCCccCCHHHHHHHHH
Confidence            46899999999999999999975

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.06  E-value=0.25  Score=30.81  Aligned_cols=23  Identities=17%  Similarity=0.358  Sum_probs=21.0

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em5_A           11 KSHQCHECGRGFTLKSHLNQHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeECCcCCCccCCHHHHHHHHH
Confidence            46899999999999999999985

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.02  E-value=0.22  Score=30.32  Aligned_cols=23  Identities=13%  Similarity=0.264  Sum_probs=20.9

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        10 k~~~C~~C~k~f~~~~~L~~H~~   32 (42)
T 2en2_A           10 KPYKCETCGARFVQVAHLRAHVL   32 (42)
T ss_dssp             CSEECTTTCCEESSHHHHHHHTH
T ss_pred             CCEeCCCcChhhCCHHHHHHHHH
Confidence            46899999999999999999975

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.98  E-value=0.26  Score=30.67  Aligned_cols=23  Identities=17%  Similarity=0.317  Sum_probs=21.0

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eq2_A           11 KPYQCNECGKAFSQTSKLARHQR   33 (46)
T ss_dssp             CSSSCCSSCCCCSSHHHHHHHGG
T ss_pred             CCeECCCCCcccCCHHHHHHHHH
Confidence            46899999999999999999985

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=88.96  E-value=0.15  Score=28.03  Aligned_cols=22  Identities=14%  Similarity=0.480  Sum_probs=19.8

Q ss_pred             ccccccceeeeCCHHHHHHhhc
Q 024438          209 VRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       209 ~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      .|.|..|+..|.....|..|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~   23 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIK   23 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHH
T ss_pred             CccCCCCCCccCCHHHHHHHHH
Confidence            4789999999999999999974

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=88.94  E-value=0.14  Score=27.94  Aligned_cols=22  Identities=23%  Similarity=0.452  Sum_probs=19.8

Q ss_pred             ccccccceeeeCCHHHHHHhhc
Q 024438          209 VRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       209 ~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      .|.|..|+..|.....|..|++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~   23 (29)
T 2m0e_A            2 EHKCPHCDKKFNQVGNLKAHLK   23 (29)
T ss_dssp             CCCCSSCCCCCCTTTHHHHHHH
T ss_pred             CCcCCCCCcccCCHHHHHHHHH
Confidence            4789999999999999999974

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=88.91  E-value=0.27  Score=26.92  Aligned_cols=22  Identities=18%  Similarity=0.501  Sum_probs=19.9

Q ss_pred             CcccccceeeeCCHHHHHHHhC
Q 024438          135 PVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       135 ~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      .+.|.+|+..|.....|..|..
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~   23 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYR   23 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CeECCCCCcccCCHHHHHHHHH
Confidence            4789999999999999999974

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.89  E-value=0.26  Score=30.73  Aligned_cols=23  Identities=17%  Similarity=0.262  Sum_probs=21.1

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|.+|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2ytp_A           11 RHYECSECGKAFARKSTLIMHQR   33 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeECCcCCcccCCHHHHHHHHH
Confidence            46899999999999999999976

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.88  E-value=0.26  Score=30.66  Aligned_cols=23  Identities=17%  Similarity=0.306  Sum_probs=21.1

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.....|..|++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ep0_A           11 KPYKCDVCHKSFRYGSSLTVHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeeCcccCcccCChHHHHHHHH
Confidence            46899999999999999999975

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=88.87  E-value=0.27  Score=26.87  Aligned_cols=22  Identities=23%  Similarity=0.629  Sum_probs=20.0

Q ss_pred             CCcccccceeeeCCHHHHHHHh
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHI  155 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~  155 (267)
                      +.+.|.+|+..|.....|..|+
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~   23 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHL   23 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHH
T ss_pred             cCccCCCcChhhCCHHHHHHHH
Confidence            3578999999999999999997

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.85  E-value=0.26  Score=30.58  Aligned_cols=23  Identities=13%  Similarity=0.247  Sum_probs=21.1

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ep1_A           11 KPYECSDCGKSFIKKSQLHVHQR   33 (46)
T ss_dssp             CSSCCSSSCCCCSSHHHHHHHHG
T ss_pred             CCcCCCCCCchhCCHHHHHHHHH
Confidence            46899999999999999999985

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.82  E-value=0.27  Score=30.62  Aligned_cols=23  Identities=22%  Similarity=0.442  Sum_probs=21.0

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eml_A           11 KPYECSVCGKAFSHRQSLSVHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHG
T ss_pred             CCeeCCCcCCccCCHHHHHHHHH
Confidence            46899999999999999999975

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.79  E-value=0.29  Score=30.48  Aligned_cols=23  Identities=13%  Similarity=0.203  Sum_probs=21.1

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em7_A           11 KPYKCEECGKGFICRRDLYTHHM   33 (46)
T ss_dssp             CSEECSSSCCEESCHHHHHHHGG
T ss_pred             cCccCCCccchhCCHHHHHHHHH
Confidence            46899999999999999999975

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.77  E-value=0.28  Score=30.19  Aligned_cols=23  Identities=17%  Similarity=0.332  Sum_probs=21.0

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|.+|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2emb_A           11 KRYECSKCQATFNLRKHLIQHQK   33 (44)
T ss_dssp             SSEECTTTCCEESCHHHHHHHGG
T ss_pred             CCeECCCCCCccCCHHHHHHHHH
Confidence            36899999999999999999985

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.76  E-value=0.29  Score=30.55  Aligned_cols=23  Identities=13%  Similarity=0.277  Sum_probs=21.0

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yth_A           11 KPFQCEECGKRFTQNSHLHSHQR   33 (46)
T ss_dssp             SSBCCSSSCCCBSSHHHHHHHGG
T ss_pred             cCCCCCCCCcccCCHHHHHHHHH
Confidence            46899999999999999999975

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.75  E-value=0.22  Score=30.22  Aligned_cols=23  Identities=17%  Similarity=0.327  Sum_probs=21.0

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        10 k~~~C~~C~k~f~~~~~L~~H~~   32 (42)
T 2ytb_A           10 KPYRCDQCGKAFSQKGSLIVHIR   32 (42)
T ss_dssp             CSBCCTTTTCCBSSHHHHHTTGG
T ss_pred             CCeeCCCccchhCCHHHHHHHHH
Confidence            46899999999999999999985

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.72  E-value=0.29  Score=30.57  Aligned_cols=23  Identities=17%  Similarity=0.391  Sum_probs=21.0

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em6_A           11 KCYKCDVCGKEFSQSSHLQTHQR   33 (46)
T ss_dssp             CCCBCSSSCCBCSSHHHHHHHHT
T ss_pred             CCeECCCCCcccCCHHHHHHHHH
Confidence            46899999999999999999975

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.71  E-value=0.24  Score=30.34  Aligned_cols=23  Identities=22%  Similarity=0.314  Sum_probs=20.8

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|.+|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2eof_A           11 KPYECNECQKAFNTKSNLMVHQR   33 (44)
T ss_dssp             CSEECTTTCCEESCHHHHHHHHH
T ss_pred             CCeECCCCCcccCCHhHHHHHHH
Confidence            46899999999999999999974

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.71  E-value=0.23  Score=30.81  Aligned_cols=23  Identities=17%  Similarity=0.313  Sum_probs=20.9

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eor_A           11 KPYNCEECGKAFIHDSQLQEHQR   33 (46)
T ss_dssp             CSEECTTTCCEESSHHHHHHHHH
T ss_pred             cCccCCCCCCCcCCHHHHHHHHH
Confidence            46899999999999999999974

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.68  E-value=0.28  Score=30.52  Aligned_cols=23  Identities=13%  Similarity=0.268  Sum_probs=21.1

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|.+|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ene_A           11 KPYKCNECGKVFRHNSYLSRHQR   33 (46)
T ss_dssp             SSEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeECCCCCchhCChHHHHHHHh
Confidence            46899999999999999999986

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.68  E-value=0.17  Score=29.91  Aligned_cols=23  Identities=13%  Similarity=0.348  Sum_probs=20.6

Q ss_pred             cccccccceeeeCCH-HHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQ-EAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe-~~~~sHL~  230 (267)
                      ..|.|.+|+..|.+. ..|..|++
T Consensus         8 k~~~C~~C~k~f~~~~~~L~~H~~   31 (37)
T 2elp_A            8 RAMKCPYCDFYFMKNGSDLQRHIW   31 (37)
T ss_dssp             CCEECSSSSCEECSSCHHHHHHHH
T ss_pred             CCeECCCCChhhccCHHHHHHHHH
Confidence            368999999999999 99999974

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=88.67  E-value=0.23  Score=30.99  Aligned_cols=23  Identities=13%  Similarity=0.234  Sum_probs=20.8

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emj_A           11 KPFECAECGKSFSISSQLATHQR   33 (46)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHH
T ss_pred             CCEECCCCCcccCCHHHHHHHHH
Confidence            46899999999999999999974

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.64  E-value=0.28  Score=30.44  Aligned_cols=23  Identities=22%  Similarity=0.314  Sum_probs=21.0

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eme_A           11 KPYVCDYCGKAFGLSAELVRHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHG
T ss_pred             CCeECCCCChhhCCHHHHHHHHH
Confidence            46899999999999999999985

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.63  E-value=0.27  Score=30.65  Aligned_cols=23  Identities=17%  Similarity=0.400  Sum_probs=21.1

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytt_A           11 KPYQCSECGKSFSGSYRLTQHWI   33 (46)
T ss_dssp             CTTCCSSSCCCCSSHHHHHHHHT
T ss_pred             CCeeCCCCCcccCCHHHHHHHHH
Confidence            46899999999999999999975

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.63  E-value=0.28  Score=30.55  Aligned_cols=23  Identities=13%  Similarity=0.280  Sum_probs=20.9

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2yti_A           11 KPYKCNECGKVFTQNSHLARHRG   33 (46)
T ss_dssp             CTTCCSSSCCCCSSHHHHHHHHT
T ss_pred             cCeECCCCCcccCChhHHHHHhH
Confidence            46899999999999999999975

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.60  E-value=0.24  Score=30.94  Aligned_cols=23  Identities=17%  Similarity=0.247  Sum_probs=20.8

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.....|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eoh_A           11 KPYECKECRKTFIQIGHLNQHKR   33 (46)
T ss_dssp             CSCCCSSSCCCCSSHHHHHHHHH
T ss_pred             CCcCCCCcCchhCCHHHHHHHHH
Confidence            46899999999999999999974

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.60  E-value=0.3  Score=30.45  Aligned_cols=23  Identities=17%  Similarity=0.299  Sum_probs=21.1

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytq_A           11 KPYGCSECGKAFSSKSYLIIHMR   33 (46)
T ss_dssp             CSCBCSSSCCBCSCHHHHHHHHT
T ss_pred             CCcCCCccChhhCChHHHHHHHH
Confidence            46899999999999999999976

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.55  E-value=0.25  Score=30.69  Aligned_cols=23  Identities=22%  Similarity=0.300  Sum_probs=20.8

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytf_A           11 KPFECSECQKAFNTKSNLIVHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcCCCCCCcccCCHHHHHHHHH
Confidence            46899999999999999999974

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.54  E-value=0.24  Score=30.93  Aligned_cols=23  Identities=22%  Similarity=0.439  Sum_probs=21.1

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.....|..|++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2enh_A           11 KPYECDVCRKAFSHHASLTQHQR   33 (46)
T ss_dssp             SSCBCTTTCCBCSSSHHHHHHGG
T ss_pred             CCcCCCCcCchhCCHHHHHHHHH
Confidence            46899999999999999999975

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.49  E-value=0.24  Score=30.79  Aligned_cols=23  Identities=17%  Similarity=0.362  Sum_probs=21.0

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eq3_A           11 KPYECNQCGKAFSVRSSLTTHQA   33 (46)
T ss_dssp             CSSEETTTTEECSSHHHHHHHHT
T ss_pred             CCeECCCCChhhCCHHHHHHHHH
Confidence            46899999999999999999975

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.46  E-value=0.26  Score=30.56  Aligned_cols=23  Identities=13%  Similarity=0.228  Sum_probs=20.8

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eov_A           11 KPYKCSDCGKSFTWKSRLRIHQK   33 (46)
T ss_dssp             CSCBCSSSCCBCSSHHHHHHHHH
T ss_pred             CCccCCccChhhCCHHHHHHHHH
Confidence            46899999999999999999974

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.44  E-value=0.3  Score=30.29  Aligned_cols=24  Identities=13%  Similarity=0.126  Sum_probs=21.4

Q ss_pred             cccccccceeeeCCHHHHHHhhcc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLSG  231 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~G  231 (267)
                      ..|.|++|+..|.+...|..|++.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eop_A           11 KPHECRECGKSFSFNSQLIVHQRI   34 (46)
T ss_dssp             CSCBCTTTCCBCSSHHHHHHHHTT
T ss_pred             CCeeCCCCCchhCCHHHHHHHHHH
Confidence            468999999999999999999753

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.41  E-value=0.23  Score=31.00  Aligned_cols=23  Identities=17%  Similarity=0.320  Sum_probs=20.8

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|.+|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yto_A           11 KPYKCSDCGKAFTRKSGLHIHQQ   33 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCEECcccCCccCCHhHHHHHHH
Confidence            46899999999999999999974

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.39  E-value=0.23  Score=31.13  Aligned_cols=23  Identities=17%  Similarity=0.238  Sum_probs=20.8

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.....|..|++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2eom_A           11 RGHRCSDCGKFFLQASNFIQHRR   33 (46)
T ss_dssp             SSCCCSSSCCCCSSHHHHHHHHH
T ss_pred             CCcCCCCCCCeeCChHHHHHHHH
Confidence            46899999999999999999974

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.37  E-value=0.32  Score=30.34  Aligned_cols=23  Identities=17%  Similarity=0.287  Sum_probs=21.1

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2elz_A           11 KPYKCEDCGKGYNRRLNLDMHQR   33 (46)
T ss_dssp             SSCBCSSSCCBCSSHHHHHHHGG
T ss_pred             CCeeCcccCchhCCHHHHHHHHH
Confidence            46999999999999999999976

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.36  E-value=0.29  Score=30.36  Aligned_cols=23  Identities=17%  Similarity=0.314  Sum_probs=21.1

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytr_A           11 KPYKCNECGKAFSQTSKLARHQR   33 (46)
T ss_dssp             CTTCCTTTCCCCSSHHHHHHHHT
T ss_pred             cCcCCCCCCCccCCHHHHHHHHH
Confidence            46899999999999999999975

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.32  E-value=0.24  Score=30.81  Aligned_cols=23  Identities=17%  Similarity=0.351  Sum_probs=21.0

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eq1_A           11 KPYKCNECGKAFRAHSNLTTHQV   33 (46)
T ss_dssp             CCCCCTTTTCCCSSHHHHHHHHT
T ss_pred             CCeECCcCChhhCCHHHHHHHHH
Confidence            46899999999999999999975

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.29  E-value=0.27  Score=30.51  Aligned_cols=23  Identities=13%  Similarity=0.316  Sum_probs=21.0

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2eoe_A           11 KPYKCNECGKVFTQNSHLANHQR   33 (46)
T ss_dssp             CSSEETTTTEECSSHHHHHHHHG
T ss_pred             CCeECCCcChhhCCHHHHHHHHH
Confidence            46899999999999999999975

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.24  E-value=0.32  Score=30.22  Aligned_cols=23  Identities=13%  Similarity=0.280  Sum_probs=21.0

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2ytn_A           11 KPYKCNECGKVFTQNSHLARHRG   33 (46)
T ss_dssp             SSCBCTTTCCBCSSHHHHHHHGG
T ss_pred             cCeECCCCCCeeCCHHHHHHHhh
Confidence            46899999999999999999975

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=88.00  E-value=0.092  Score=29.21  Aligned_cols=22  Identities=23%  Similarity=0.436  Sum_probs=20.1

Q ss_pred             ccccccceeeeCCHHHHHHhhc
Q 024438          209 VRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       209 ~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      .|.|..|+..|.+...|..|++
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~   24 (30)
T 2lvr_A            3 PYVCIHCQRQFADPGALQRHVR   24 (30)
Confidence            5889999999999999999975

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.18  E-value=0.27  Score=30.58  Aligned_cols=23  Identities=17%  Similarity=0.332  Sum_probs=20.8

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytj_A           11 KPYICAECGKAFTIRSNLIKHQK   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             cCeECCCCChhhCCHHHHHHHHH
Confidence            46899999999999999999974

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=88.18  E-value=0.19  Score=39.17  Aligned_cols=75  Identities=15%  Similarity=0.263  Sum_probs=42.9

Q ss_pred             cccceeeeCCHHHHHHHhCCchhHHHHHhhcCCCccccccccc--cCCCCCCChhHHHHHHHhhhcCCCcccccccccc-
Q 024438          138 CVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCN--TINKVSLPSQELEMKRQKLLNGGAAVDSVRVCTV-  214 (267)
Q Consensus       138 C~LCnVsctS~~~l~sH~~GKKHqknlk~l~~~~~~~~k~s~N--t~G~~~aP~ed~evkkqklle~~~~~~~~~~C~l-  214 (267)
                      |..|+..|.+...|..|+.  .|...     ..      -.|.  ..|.......++..-.+.     ......|.|.+ 
T Consensus        42 C~~c~~~f~~~~~l~~H~~--~h~~~-----~~------~~C~~~~C~~~f~~~~~l~~H~~~-----h~~~~~~~C~~~  103 (155)
T 2gli_A           42 CSRELRPFKAQYMLVVHMR--RHTGE-----KP------HKCTFEGCRKSYSRLENLKTHLRS-----HTGEKPYMCEHE  103 (155)
T ss_dssp             CTTTTCCCSSHHHHHHHTH--HHHCC-----CC------CCCCSTTCCCCCSSHHHHHHHHHH-----TTTCCCEECCST
T ss_pred             ccchhhhhhhHHHHHHHHH--hcCCC-----CC------ccCCCCCCCCcccCHHHHHHHHHH-----cCCCCCeeCCCC
Confidence            4455699999999999974  33211     00      0122  122222222222211111     11234699999 


Q ss_pred             -ceeeeCCHHHHHHhhc
Q 024438          215 -CNIACNGQEAFNDHLS  230 (267)
Q Consensus       215 -CnVscnSe~~~~sHL~  230 (267)
                       |+..|.+...|..|++
T Consensus       104 ~C~~~f~~~~~L~~H~~  120 (155)
T 2gli_A          104 GCSKAFSNASDRAKHQN  120 (155)
T ss_dssp             TCCCEESSSSTTHHHHH
T ss_pred             CCCCccCCHHHHHHHHH
Confidence             9999999999999973

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.17  E-value=0.27  Score=30.57  Aligned_cols=23  Identities=17%  Similarity=0.270  Sum_probs=20.9

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emy_A           11 NPYECHECGKAFSRKYQLISHQR   33 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH
T ss_pred             cCcCCCCCCcccCcHHHHHHHHH
Confidence            46899999999999999999975

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=88.15  E-value=0.31  Score=28.07  Aligned_cols=23  Identities=22%  Similarity=0.330  Sum_probs=20.7

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      ..+.|.+|+..|.....|..|+.
T Consensus         6 k~~~C~~C~k~f~~~~~L~~H~~   28 (35)
T 2elx_A            6 SGYVCALCLKKFVSSIRLRSHIR   28 (35)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCeECCCCcchhCCHHHHHHHHH
Confidence            46899999999999999999964

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.12  E-value=0.27  Score=30.50  Aligned_cols=23  Identities=17%  Similarity=0.339  Sum_probs=20.8

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|.+|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eow_A           11 KPYKCNECGKAFRARSSLAIHQA   33 (46)
T ss_dssp             CCEECTTSCCEESSHHHHHHHHH
T ss_pred             CCeeccccCChhcCHHHHHHHHH
Confidence            46899999999999999999974

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=88.11  E-value=0.32  Score=30.16  Aligned_cols=23  Identities=13%  Similarity=0.177  Sum_probs=21.0

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2el4_A           11 KPYGCSQCAKTFSLKSQLIVHQR   33 (46)
T ss_dssp             CSEECSSSSCEESSHHHHHHHGG
T ss_pred             CceECCCCCchhCCHHHHHHHHH
Confidence            46899999999999999999985

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.11  E-value=0.31  Score=30.30  Aligned_cols=23  Identities=13%  Similarity=0.238  Sum_probs=21.1

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2eq0_A           11 KPYKCHECGKVFRRNSHLARHQL   33 (46)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHT
T ss_pred             CCeECCCCCchhCCHHHHHHHHH
Confidence            46899999999999999999985

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=88.10  E-value=0.34  Score=30.64  Aligned_cols=24  Identities=17%  Similarity=0.304  Sum_probs=21.5

Q ss_pred             ccccccccceeeeCCHHHHHHhhc
Q 024438          207 DSVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       207 ~~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ...|.|++|+..|.....|..|++
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~   33 (48)
T 2epr_A           10 RKQVACEICGKIFRDVYHLNRHKL   33 (48)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHGG
T ss_pred             CcCeeCCCCCcccCCHHHHHHHHH
Confidence            346899999999999999999975

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.08  E-value=0.33  Score=30.14  Aligned_cols=23  Identities=17%  Similarity=0.247  Sum_probs=21.2

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.....|..|++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (47)
T 2epx_A           11 KPYECIECGKAFIQNTSLIRHWR   33 (47)
T ss_dssp             CSBCCSSSCCCBSSHHHHHHHHT
T ss_pred             CCEECCccCchhCChHHHHHHhH
Confidence            46899999999999999999986

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=88.07  E-value=0.3  Score=28.36  Aligned_cols=23  Identities=22%  Similarity=0.561  Sum_probs=20.9

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      +.+.|.+|+..|.....|..|+.
T Consensus         6 k~~~C~~C~k~f~~~~~l~~H~~   28 (35)
T 1srk_A            6 RPFVCRICLSAFTTKANCARHLK   28 (35)
T ss_dssp             SCEECSSSCCEESSHHHHHHHHG
T ss_pred             cCeeCCCCCcccCCHHHHHHHHH
Confidence            46889999999999999999974

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.02  E-value=0.28  Score=30.59  Aligned_cols=23  Identities=17%  Similarity=0.245  Sum_probs=20.8

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|.+|+..|.....|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em4_A           11 RPYECIECGKAFKTKSSLICHRR   33 (46)
T ss_dssp             SSEECSSSCCEESSHHHHHHHHH
T ss_pred             cCcCCCCCCCccCCHHHHHHHHH
Confidence            46899999999999999999974

>4f9c_B Protein DBF4 homolog A; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_B* 4f9b_B* 4f9a_B*

Probab=88.01  E-value=0.22  Score=41.30  Aligned_cols=27  Identities=19%  Similarity=0.382  Sum_probs=23.1

Q ss_pred             ccccccceeeeCCHHHHHHhhcchhHHHHH
Q 024438          209 VRVCTVCNIACNGQEAFNDHLSGKKHAAQV  238 (267)
Q Consensus       209 ~~~C~lCnVscnSe~~~~sHL~GKKHkkkv  238 (267)
                      .-||++|.+.|..   |+.|+.+.+|+.-+
T Consensus        87 ~GyCE~C~~~y~~---l~~H~~s~~Hr~fa  113 (144)
T 4f9c_B           87 KGYCECCLQKYED---LETHLLSEQHRNFA  113 (144)
T ss_dssp             -CEETTTTEECSC---HHHHHHSHHHHHHH
T ss_pred             CCCccchhhhhhh---HHHHcCCHHHHHHH
Confidence            4699999999996   77999999999654

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=88.01  E-value=0.23  Score=27.51  Aligned_cols=21  Identities=24%  Similarity=0.498  Sum_probs=19.1

Q ss_pred             ccccccceeeeCCHHHHHHhh
Q 024438          209 VRVCTVCNIACNGQEAFNDHL  229 (267)
Q Consensus       209 ~~~C~lCnVscnSe~~~~sHL  229 (267)
                      .|.|..|+..|.+...|..|+
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~   22 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHA   22 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHH
T ss_pred             CcCCcccCcccCChHHHHHHH
Confidence            478999999999999999994

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.99  E-value=0.28  Score=30.21  Aligned_cols=23  Identities=17%  Similarity=0.265  Sum_probs=20.8

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~   31 (44)
T 2emx_A            9 KPFGCSCCEKAFSSKSYLLVHQQ   31 (44)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHH
T ss_pred             cCccCCCCCcccCCHHHHHHHHH
Confidence            46899999999999999999974

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.97  E-value=0.28  Score=30.49  Aligned_cols=23  Identities=13%  Similarity=0.387  Sum_probs=21.0

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ep2_A           11 KPYECSICGKSFTKKSQLHVHQQ   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             cCcCCCCCCcccCCHHHHHHHHH
Confidence            46899999999999999999975

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.95  E-value=0.31  Score=30.34  Aligned_cols=23  Identities=17%  Similarity=0.313  Sum_probs=21.1

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ysp_A           11 KPYKCEKCGKGYNSKFNLDMHQK   33 (46)
T ss_dssp             CSEEETTTTEEESCHHHHHHHHT
T ss_pred             CCeECCCCCCccCCHHHHHHHHH
Confidence            46899999999999999999976

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=87.93  E-value=0.34  Score=26.38  Aligned_cols=22  Identities=18%  Similarity=0.673  Sum_probs=19.8

Q ss_pred             CcccccceeeeCCHHHHHHHhC
Q 024438          135 PVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       135 ~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      .+.|.+|+..|.....|..|..
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~   23 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLR   23 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHH
T ss_pred             CccCCCCCCccCChhHHHHHHH
Confidence            4789999999999999999973

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=87.89  E-value=0.3  Score=30.16  Aligned_cols=23  Identities=13%  Similarity=0.388  Sum_probs=20.8

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|+.|+..|.+...|..|++
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~   31 (43)
T 2yrm_A            9 GAFFCNECDCRFSEEASLKRHTL   31 (43)
T ss_dssp             CCBCCSSSCCCBSSHHHHHHHHH
T ss_pred             CCEECCCCCCeeCChHHHHHHHH
Confidence            46899999999999999999974

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.88  E-value=0.29  Score=30.54  Aligned_cols=23  Identities=22%  Similarity=0.335  Sum_probs=20.8

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em2_A           11 KPFKCKECGKAFRQNIHLASHLR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCEECCcCCchhCCHHHHHHHHH
Confidence            46899999999999999999974

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.87  E-value=0.31  Score=30.32  Aligned_cols=23  Identities=13%  Similarity=0.283  Sum_probs=21.0

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2en1_A           11 KPFKCEECGKRFTQNSQLHSHQR   33 (46)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGG
T ss_pred             CCeeCCCCCcccCCHHHHHHHHH
Confidence            46899999999999999999985

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=87.86  E-value=0.35  Score=29.98  Aligned_cols=23  Identities=13%  Similarity=0.213  Sum_probs=21.0

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|.+|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em9_A           11 KPYNCKECGKSFRWASCLLKHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHGG
T ss_pred             cCeECCccccccCChHHHHHHHH
Confidence            46899999999999999999975

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=87.84  E-value=0.31  Score=30.38  Aligned_cols=23  Identities=17%  Similarity=0.277  Sum_probs=20.9

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.....|..|++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emk_A           11 KPYECKECGKAFSQTTHLIQHQR   33 (46)
T ss_dssp             CSCBCSSSCCBCSCHHHHHHHHH
T ss_pred             CceECCCCCchhCCHHHHHHHHH
Confidence            46899999999999999999974

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=87.83  E-value=0.34  Score=30.12  Aligned_cols=23  Identities=13%  Similarity=0.330  Sum_probs=21.1

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ema_A           11 KRYKCNECGKVFSRNSQLSQHQK   33 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHT
T ss_pred             cCcCCCCCcchhCCHHHHHHHHH
Confidence            46899999999999999999975

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.83  E-value=0.26  Score=30.48  Aligned_cols=23  Identities=13%  Similarity=0.330  Sum_probs=20.7

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2eou_A           11 TTSECQECGKIFRHSSLLIEHQA   33 (44)
T ss_dssp             CCCCCTTTCCCCSSHHHHHHHHH
T ss_pred             cCeECCCCCcccCCHHHHHHHHH
Confidence            46899999999999999999974

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.82  E-value=0.29  Score=30.50  Aligned_cols=23  Identities=13%  Similarity=0.238  Sum_probs=21.0

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em8_A           11 KPYKCVECGKGYKRRLDLDFHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCeECcccCchhCCHHHHHHHHH
Confidence            46899999999999999999975

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=87.81  E-value=0.26  Score=27.07  Aligned_cols=22  Identities=23%  Similarity=0.339  Sum_probs=20.1

Q ss_pred             CcccccceeeeCCHHHHHHHhC
Q 024438          135 PVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       135 ~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      .+.|.+|+..|.....|..|+.
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~   23 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHIL   23 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHT
T ss_pred             CccCCCCCchhCCHHHHHHHHH
Confidence            4789999999999999999985

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.76  E-value=0.3  Score=30.29  Aligned_cols=23  Identities=13%  Similarity=0.248  Sum_probs=20.9

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2emm_A           11 RPHKCNECGKSFIQSAHLIQHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCeeCCCCChhhCCHHHHHHHHH
Confidence            46899999999999999999974

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=87.73  E-value=0.35  Score=30.06  Aligned_cols=23  Identities=13%  Similarity=0.388  Sum_probs=21.0

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.....|..|++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2em0_A           11 KTWKCRECDMCFSQASSLRLHQN   33 (46)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHGG
T ss_pred             cCeECCCCCcccCCHHHHHHHHH
Confidence            46899999999999999999985

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.71  E-value=0.22  Score=31.04  Aligned_cols=23  Identities=17%  Similarity=0.306  Sum_probs=20.7

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2en3_A           11 KPFQCKECGMNFSWSCSLFKHLR   33 (46)
T ss_dssp             CSEECSSSCCEESSSHHHHHHHH
T ss_pred             CCeeCcccChhhCCHHHHHHHHH
Confidence            46899999999999999999974

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.67  E-value=0.27  Score=30.67  Aligned_cols=23  Identities=30%  Similarity=0.459  Sum_probs=20.7

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.....|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eoz_A           11 KPYSCNVCGKAFVLSAHLNQHLR   33 (46)
T ss_dssp             CSEEETTTTEEESSHHHHHHHHH
T ss_pred             CCeECcccChhhCCHHHHHHHHH
Confidence            46899999999999999999974

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=87.63  E-value=0.31  Score=26.32  Aligned_cols=21  Identities=19%  Similarity=0.507  Sum_probs=19.2

Q ss_pred             cccccceeeeCCHHHHHHHhC
Q 024438          136 VRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       136 ~~C~LCnVsctS~~~l~sH~~  156 (267)
                      +.|.+|+..|.....|..|..
T Consensus         2 ~~C~~C~k~f~~~~~l~~H~~   22 (27)
T 1znf_A            2 YKCGLCERSFVEKSALSRHQR   22 (27)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGG
T ss_pred             ccCCCCCCcCCCHHHHHHHHH
Confidence            679999999999999999973

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.62  E-value=0.3  Score=30.37  Aligned_cols=23  Identities=26%  Similarity=0.498  Sum_probs=20.9

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emh_A           11 RPYICTVCGKAFTDRSNLIKHQK   33 (46)
T ss_dssp             CSEECTTTCCEESSHHHHHHHHH
T ss_pred             CCcCCCCCCchhCCHHHHHHHHH
Confidence            46899999999999999999974

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=87.59  E-value=0.34  Score=30.17  Aligned_cols=23  Identities=17%  Similarity=0.343  Sum_probs=21.0

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2el6_A           11 NPYKCSQCEKSFSGKLRLLVHQR   33 (46)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHG
T ss_pred             CCeECCCCCcccCCHHHHHHHHH
Confidence            46899999999999999999975

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.59  E-value=0.29  Score=30.54  Aligned_cols=23  Identities=13%  Similarity=0.293  Sum_probs=20.9

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.....|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eoy_A           11 KCFKCNKCEKTFSCSKYLTQHER   33 (46)
T ss_dssp             CCEECSSSCCEESSSHHHHHHHT
T ss_pred             CCEECcCCCCcCCCHHHHHHHHH
Confidence            46899999999999999999975

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.55  E-value=0.29  Score=30.65  Aligned_cols=23  Identities=17%  Similarity=0.327  Sum_probs=20.9

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytm_A           11 KPYKCMECGKAFGDNSSCTQHQR   33 (46)
T ss_dssp             CSSSBTTTTBCCSSHHHHHHHHH
T ss_pred             CCcCCCCCCchhCCHHHHHHHHH
Confidence            46899999999999999999974

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.55  E-value=0.31  Score=30.43  Aligned_cols=23  Identities=17%  Similarity=0.358  Sum_probs=20.9

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.....|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2emz_A           11 RPFKCNECGKGFGRRSHLAGHLR   33 (46)
T ss_dssp             CSCCCSSSCCCCSSHHHHHHHHH
T ss_pred             CCeECCCCCcccCCHHHHHHHHH
Confidence            46899999999999999999975

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.51  E-value=0.32  Score=30.25  Aligned_cols=23  Identities=13%  Similarity=0.340  Sum_probs=20.9

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytk_A           11 KPYKCNECGKVFTQNSHLTNHWR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCEeCCcCCCccCCHHHHHHHHH
Confidence            46899999999999999999974

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.48  E-value=0.38  Score=28.16  Aligned_cols=23  Identities=13%  Similarity=0.288  Sum_probs=21.0

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      ..+.|.+|+..|.....|..|+.
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elv_A            8 LLYDCHICERKFKNELDRDRHML   30 (36)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeECCCCCCccCCHHHHHHHHH
Confidence            46889999999999999999975

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.42  E-value=0.29  Score=30.46  Aligned_cols=23  Identities=13%  Similarity=0.299  Sum_probs=20.9

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2en6_A           11 KPYGCNECGKTFSQKSILSAHQR   33 (46)
T ss_dssp             CCEEETTTTEEESSHHHHHHHHH
T ss_pred             cCeECCCCCcccCchHHHHHHHH
Confidence            46899999999999999999975

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.41  E-value=0.33  Score=30.17  Aligned_cols=23  Identities=17%  Similarity=0.330  Sum_probs=20.9

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2emp_A           11 KPYMCNECGKAFSVYSSLTTHQV   33 (46)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHH
T ss_pred             cCeECCCCCchhCCHHHHHHHHH
Confidence            46899999999999999999974

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.41  E-value=0.3  Score=30.27  Aligned_cols=23  Identities=13%  Similarity=0.290  Sum_probs=20.8

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eq4_A           11 KLYNCKECGKSFSRAPCLLKHER   33 (46)
T ss_dssp             CCCCBTTTTBCCSCHHHHHHHHH
T ss_pred             CCeECCCCCCccCchHHHHHHHH
Confidence            46899999999999999999974

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=87.39  E-value=0.33  Score=26.53  Aligned_cols=22  Identities=32%  Similarity=0.587  Sum_probs=19.9

Q ss_pred             ccccc--cceeeeCCHHHHHHhhc
Q 024438          209 VRVCT--VCNIACNGQEAFNDHLS  230 (267)
Q Consensus       209 ~~~C~--lCnVscnSe~~~~sHL~  230 (267)
                      .|.|+  .|+..|.+...|..|++
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~   25 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKK   25 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHG
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHH
Confidence            47899  99999999999999975

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.36  E-value=0.33  Score=30.29  Aligned_cols=23  Identities=17%  Similarity=0.345  Sum_probs=20.8

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2eoo_A           11 RPYGCNECGKNFGRHSHLIEHLK   33 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCEEccccCcccCCHHHHHHHHH
Confidence            46899999999999999999974

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.34  E-value=0.37  Score=29.83  Aligned_cols=23  Identities=17%  Similarity=0.228  Sum_probs=20.9

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2en8_A           11 KSHTCDECGKNFCYISALRIHQR   33 (46)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHT
T ss_pred             CCeECCCcCcccCCHHHHHHHHH
Confidence            46899999999999999999975

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.30  E-value=0.25  Score=29.52  Aligned_cols=21  Identities=14%  Similarity=0.491  Sum_probs=19.4

Q ss_pred             cccccccceeeeCCHHHHHHh
Q 024438          208 SVRVCTVCNIACNGQEAFNDH  228 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sH  228 (267)
                      ..|.|+.|+..|.+...|..|
T Consensus         8 k~~~C~~C~k~f~~~~~L~~H   28 (37)
T 2elm_A            8 HLYYCSQCHYSSITKNCLKRH   28 (37)
T ss_dssp             CEEECSSSSCEEECHHHHHHH
T ss_pred             cCeECCCCCcccCCHHHHHHH
Confidence            368899999999999999999

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.24  E-value=0.33  Score=30.16  Aligned_cols=23  Identities=13%  Similarity=0.192  Sum_probs=20.8

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.....|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2enc_A           11 KPFKCEECGKGFYTNSQCYSHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcCCCCCCCcCCChHHHHHHHH
Confidence            46899999999999999999974

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.24  E-value=0.33  Score=30.16  Aligned_cols=23  Identities=22%  Similarity=0.434  Sum_probs=20.8

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytd_A           11 KPYKCSECGKAFHRHTHLNEHRR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             cCeECCCCCCeeCChHHHHHHHH
Confidence            46899999999999999999974

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.19  E-value=0.33  Score=30.16  Aligned_cols=23  Identities=22%  Similarity=0.465  Sum_probs=20.8

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eoq_A           11 KPFKCDICGKSFCGRSRLNRHSM   33 (46)
T ss_dssp             CSCCCSSSCCCCSSHHHHHHHHH
T ss_pred             CCcCCCcCCchhCCHHHHHHHHH
Confidence            46899999999999999999974

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.15  E-value=0.27  Score=30.63  Aligned_cols=23  Identities=17%  Similarity=0.313  Sum_probs=21.1

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytg_A           11 KPFKCGECGKSYNQRVHLTQHQR   33 (46)
T ss_dssp             CSEECTTTCCEESSSHHHHTTGG
T ss_pred             CCeECCCCCcccCCHHHHHHHHH
Confidence            46999999999999999999985

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=86.93  E-value=0.37  Score=28.27  Aligned_cols=23  Identities=22%  Similarity=0.514  Sum_probs=20.8

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      +.+.|.+|+..|.....|..|+.
T Consensus        10 k~~~C~~C~k~f~~~~~l~~H~~   32 (37)
T 1p7a_A           10 KPFQCPDCDRSFSRSDHLALHRK   32 (37)
T ss_dssp             SSBCCTTTCCCBSSHHHHHHHHG
T ss_pred             CCccCCCCCcccCcHHHHHHHHH
Confidence            46899999999999999999974

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.85  E-value=0.28  Score=30.18  Aligned_cols=23  Identities=13%  Similarity=0.284  Sum_probs=20.8

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|.+|+..|.....|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2yu5_A           11 NPFKCSKCDRVFTQRNYLVQHER   33 (44)
T ss_dssp             CSEECSSSSCEESSSHHHHHHHH
T ss_pred             CCeECCCCCchhCCHHHHHHHhH
Confidence            46899999999999999999974

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.84  E-value=0.36  Score=30.02  Aligned_cols=23  Identities=13%  Similarity=0.203  Sum_probs=20.7

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yso_A           11 KSHQCRECGEIFFQYVSLIEHQV   33 (46)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHH
T ss_pred             CCEEccccChhhCCHHHHHHHHH
Confidence            36899999999999999999974

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.83  E-value=0.41  Score=27.98  Aligned_cols=23  Identities=26%  Similarity=0.748  Sum_probs=20.7

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      ..+.|.+|+..|.....|..|+.
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elq_A            8 KPFKCSLCEYATRSKSNLKAHMN   30 (36)
T ss_dssp             CSEECSSSSCEESCHHHHHHHHH
T ss_pred             CCccCCCCCchhCCHHHHHHHHH
Confidence            46899999999999999999973

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=86.78  E-value=0.28  Score=30.64  Aligned_cols=23  Identities=22%  Similarity=0.343  Sum_probs=20.9

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ely_A           11 KPFKCVECGKGFSRRSALNVHHK   33 (46)
T ss_dssp             CSBCCSSSCCCBSSTTHHHHHHH
T ss_pred             CCcccCccCcccCCHHHHHHHHH
Confidence            46899999999999999999975

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.72  E-value=0.41  Score=27.83  Aligned_cols=22  Identities=23%  Similarity=0.469  Sum_probs=20.2

Q ss_pred             CCcccccceeeeCCHHHHHHHh
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHI  155 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~  155 (267)
                      ..+.|.+|+..|.....|..|+
T Consensus         8 ~~~~C~~C~k~f~~~~~l~~H~   29 (36)
T 2elr_A            8 KTHLCDMCGKKFKSKGTLKSHK   29 (36)
T ss_dssp             SSCBCTTTCCBCSSHHHHHHHH
T ss_pred             CCeecCcCCCCcCchHHHHHHH
Confidence            4688999999999999999996

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.61  E-value=0.23  Score=30.65  Aligned_cols=23  Identities=17%  Similarity=0.236  Sum_probs=20.9

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~~   33 (44)
T 2eox_A           11 KSYNCNECGKAFTRIFHLTRHQK   33 (44)
T ss_dssp             CCEEETTTTEEESSSHHHHTTHH
T ss_pred             CCeECcccCcccCCHHHHHHHHH
Confidence            46899999999999999999974

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.60  E-value=0.42  Score=27.76  Aligned_cols=23  Identities=22%  Similarity=0.560  Sum_probs=20.7

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      +.+.|.+|+..|.....|..|+.
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elt_A            8 KPYKCPQCSYASAIKANLNVHLR   30 (36)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHH
T ss_pred             CCCCCCCCCcccCCHHHHHHHHH
Confidence            46899999999999999999973

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=86.59  E-value=0.33  Score=31.62  Aligned_cols=23  Identities=17%  Similarity=0.473  Sum_probs=20.8

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|.+|+..|.+...|..|++
T Consensus        23 k~~~C~~C~k~f~~~~~L~~H~~   45 (54)
T 1yui_A           23 QPATCPICYAVIRQSRNLRRHLE   45 (54)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHH
T ss_pred             CCccCCCCCcccCCHHHHHHHHH
Confidence            46899999999999999999974

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=86.59  E-value=0.46  Score=25.94  Aligned_cols=23  Identities=17%  Similarity=0.485  Sum_probs=20.4

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      ..+.|.+|+..|.....|..|+.
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~   24 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLE   24 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHH
T ss_pred             cCccCCCCCcccCCHHHHHHHHH
Confidence            35789999999999999999974

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=86.42  E-value=0.42  Score=26.96  Aligned_cols=22  Identities=18%  Similarity=0.401  Sum_probs=19.8

Q ss_pred             ccccc--cceeeeCCHHHHHHhhc
Q 024438          209 VRVCT--VCNIACNGQEAFNDHLS  230 (267)
Q Consensus       209 ~~~C~--lCnVscnSe~~~~sHL~  230 (267)
                      .|.|.  .|+..|.+...|..|++
T Consensus         2 p~~C~~~~C~k~f~~~~~L~~H~~   25 (31)
T 1sp2_A            2 PFMCTWSYCGKRFTRSDELQRHKR   25 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHT
T ss_pred             CcCCcCCCCCcccCCHhHHHHHHH
Confidence            47898  99999999999999985

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=86.35  E-value=0.37  Score=29.89  Aligned_cols=23  Identities=17%  Similarity=0.501  Sum_probs=20.8

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.....|..|++
T Consensus         9 k~~~C~~C~k~f~~~~~l~~H~~   31 (45)
T 2epq_A            9 KPYSCPVCGLRFKRKDRMSYHVR   31 (45)
T ss_dssp             CSSEETTTTEECSCHHHHHHHHH
T ss_pred             CCCcCCCCCcccCCHHHHHHHHH
Confidence            46899999999999999999974

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=86.40  E-value=0.14  Score=27.88  Aligned_cols=22  Identities=23%  Similarity=0.460  Sum_probs=19.8

Q ss_pred             CcccccceeeeCCHHHHHHHhC
Q 024438          135 PVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       135 ~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      .+.|.+|+..|.....|..|+.
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~   23 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIR   23 (26)
Confidence            4789999999999999999974

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=86.17  E-value=0.34  Score=30.90  Aligned_cols=22  Identities=14%  Similarity=0.341  Sum_probs=20.6

Q ss_pred             ccccccceeeeCCHHHHHHhhc
Q 024438          209 VRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       209 ~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      .|.|.+|.+.|.+..+|..|+.
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye   26 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYE   26 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHH
T ss_pred             ccCCcHHHHHcCCHHHHHHHHH
Confidence            5999999999999999999983

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.95  E-value=0.34  Score=30.11  Aligned_cols=23  Identities=13%  Similarity=0.271  Sum_probs=20.9

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yu8_A           11 KPYKCNECGKVFTQNSHLARHRR   33 (46)
T ss_dssp             SSEECSSSCCEESSSHHHHHHTH
T ss_pred             CCeECCcCCchhCCHHHHHHHHH
Confidence            46899999999999999999974

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=85.78  E-value=0.47  Score=27.62  Aligned_cols=22  Identities=27%  Similarity=0.477  Sum_probs=19.9

Q ss_pred             CcccccceeeeCCHHHHHHHhC
Q 024438          135 PVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       135 ~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      .+-|.+|+..|.....|..|+.
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~   23 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHIT   23 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHH
T ss_pred             cccCCCCCchhCCHHHHHHHHH
Confidence            4789999999999999999974

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.63  E-value=0.46  Score=27.85  Aligned_cols=23  Identities=22%  Similarity=0.573  Sum_probs=20.7

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      ..+.|.+|+..|.....|..|..
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~   30 (37)
T 2elo_A            8 RSYSCPVCEKSFSEDRLIKSHIK   30 (37)
T ss_dssp             CCCEETTTTEECSSHHHHHHHHH
T ss_pred             CCcCCCCCCCccCCHHHHHHHHH
Confidence            46889999999999999999974

>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A

Probab=85.42  E-value=0.56  Score=28.69  Aligned_cols=23  Identities=22%  Similarity=0.457  Sum_probs=20.9

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      ..+.|.+|+....+...++.|+.
T Consensus         2 ~k~~CpvCk~q~Pd~kt~~~H~e   24 (28)
T 2jvx_A            2 SDFCCPKCQYQAPDMDTLQIHVM   24 (28)
T ss_dssp             CCEECTTSSCEESSHHHHHHHHH
T ss_pred             CcccCccccccCcChHHHHHHHH
Confidence            35789999999999999999985

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.38  E-value=0.38  Score=29.78  Aligned_cols=23  Identities=22%  Similarity=0.205  Sum_probs=20.7

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2epw_A           11 KPCKCTECGKAFCWKSQLIMHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSSHHHHHHHH
T ss_pred             CCeeCCCCCCccCCHHHHHHHHH
Confidence            36899999999999999999974

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=85.35  E-value=0.38  Score=31.04  Aligned_cols=22  Identities=27%  Similarity=0.436  Sum_probs=19.9

Q ss_pred             ccccccceeeeCCHHHHHHhhc
Q 024438          209 VRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       209 ~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      .|.|.+|+..|.+...|..|++
T Consensus         4 ~~~C~~C~~~f~~~~~l~~H~~   25 (57)
T 3uk3_C            4 SRECSYCGKFFRSNYYLNIHLR   25 (57)
T ss_dssp             -CBCTTTCCBCSCHHHHHHHHH
T ss_pred             CccCCCCcchhCChHHHHHHHH
Confidence            6899999999999999999975

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.34  E-value=0.53  Score=27.48  Aligned_cols=23  Identities=26%  Similarity=0.440  Sum_probs=20.7

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      ..+.|.+|+..|.....|..|+.
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2els_A            8 KIFTCEYCNKVFKFKHSLQAHLR   30 (36)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHH
T ss_pred             CCEECCCCCceeCCHHHHHHHHH
Confidence            46889999999999999999973

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=85.30  E-value=0.44  Score=27.00  Aligned_cols=22  Identities=18%  Similarity=0.264  Sum_probs=20.1

Q ss_pred             ccccc--cceeeeCCHHHHHHhhc
Q 024438          209 VRVCT--VCNIACNGQEAFNDHLS  230 (267)
Q Consensus       209 ~~~C~--lCnVscnSe~~~~sHL~  230 (267)
                      .|.|.  .|+..|.+...|..|++
T Consensus         3 ~~~C~~~~C~k~f~~~~~L~~H~~   26 (32)
T 1zfd_A            3 PYSCDHPGCDKAFVRNHDLIRHKK   26 (32)
T ss_dssp             SBCCCCTTCCCCBSSSHHHHHHHG
T ss_pred             CCcCcCCCCCCccCCHHHHHHHHH
Confidence            58899  89999999999999986

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.18  E-value=0.53  Score=29.34  Aligned_cols=23  Identities=26%  Similarity=0.561  Sum_probs=21.0

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      +.+.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eon_A           11 KPYKCQVCGKAFRVSSHLVQHHS   33 (46)
T ss_dssp             CSCBCSSSCCBCSSHHHHHHHTT
T ss_pred             cccCCCCCCcccCcHHHHHHHHH
Confidence            56899999999999999999974

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=85.15  E-value=0.6  Score=27.93  Aligned_cols=23  Identities=17%  Similarity=0.514  Sum_probs=20.8

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      ..+.|.+|+..|.+...|..|+.
T Consensus         5 k~~~C~~C~k~f~~~~~L~~H~~   27 (39)
T 1njq_A            5 RSYTCSFCKREFRSAQALGGHMN   27 (39)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHH
T ss_pred             CceECCCCCcccCCHHHHHHHHH
Confidence            46889999999999999999974

>4f9c_B Protein DBF4 homolog A; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_B* 4f9b_B* 4f9a_B*

Probab=85.14  E-value=0.28  Score=40.61  Aligned_cols=28  Identities=14%  Similarity=0.320  Sum_probs=23.3

Q ss_pred             CCcccccceeeeCCHHHHHHHhCCchhHHHH
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHISGKKHLRNL  164 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~GKKHqknl  164 (267)
                      ..-||++|.+.|.+   |+.|+.+++|+.-+
T Consensus        86 k~GyCE~C~~~y~~---l~~H~~s~~Hr~fa  113 (144)
T 4f9c_B           86 KKGYCECCLQKYED---LETHLLSEQHRNFA  113 (144)
T ss_dssp             --CEETTTTEECSC---HHHHHHSHHHHHHH
T ss_pred             CCCCccchhhhhhh---HHHHcCCHHHHHHH
Confidence            45799999999997   67999999998665

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=85.12  E-value=0.51  Score=32.02  Aligned_cols=24  Identities=21%  Similarity=0.541  Sum_probs=21.6

Q ss_pred             ccccccccceeeeCCHHHHHHhhc
Q 024438          207 DSVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       207 ~~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ...|.|++|+..|.+...|..|++
T Consensus         7 ~~~~~C~~C~k~f~~~~~L~~H~~   30 (70)
T 1x5w_A            7 GHPEKCSECSYSCSSKAALRIHER   30 (70)
T ss_dssp             CCSEECSSSSCEESSHHHHHHHHG
T ss_pred             CCCeECCCCCcccCCHHHHHHHHH
Confidence            346999999999999999999986

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.08  E-value=0.56  Score=29.05  Aligned_cols=23  Identities=22%  Similarity=0.352  Sum_probs=21.0

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      +.+.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2emg_A           11 NPFICSECGKVFTHKTNLIIHQK   33 (46)
T ss_dssp             CSCBCTTTCCBCSSHHHHHHHHT
T ss_pred             CCEECCccCcccCCHHHHHHHHH
Confidence            46899999999999999999975

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=84.74  E-value=0.55  Score=33.44  Aligned_cols=24  Identities=13%  Similarity=0.400  Sum_probs=21.3

Q ss_pred             ccccccccceeeeCCHHHHHHhhc
Q 024438          207 DSVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       207 ~~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ...|.|+.|+..|.....|..|++
T Consensus        11 ekpy~C~~CgK~F~~~s~L~~H~r   34 (66)
T 2epp_A           11 AGILPCGLCGKVFTDANRLRQHEA   34 (66)
T ss_dssp             CCCCCCTTTCCCCSCHHHHHHHHH
T ss_pred             ccCcCCCCCCCccCCHHHHHhhhh
Confidence            347999999999999999999974

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.61  E-value=0.59  Score=28.36  Aligned_cols=23  Identities=17%  Similarity=0.596  Sum_probs=21.0

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      ..+.|.+|+..|.....|..|+.
T Consensus        10 k~~~C~~C~k~f~~~~~L~~H~~   32 (42)
T 2eos_A           10 KPYPCEICGTRFRHLQTLKSHLR   32 (42)
T ss_dssp             CCBCCSSSCCCBSSHHHHHHHTT
T ss_pred             CCEECCCCCCccCCHHHHHHHHH
Confidence            46889999999999999999975

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=84.47  E-value=0.59  Score=28.27  Aligned_cols=23  Identities=30%  Similarity=0.566  Sum_probs=20.8

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      +.+.|.+|+..|.....|..|+.
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~   31 (42)
T 2el5_A            9 NPYECSECGKAFNRKDQLISHQR   31 (42)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHG
T ss_pred             CCccCCCcChhhCCHHHHHHHHH
Confidence            46899999999999999999974

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.40  E-value=0.61  Score=28.12  Aligned_cols=23  Identities=17%  Similarity=0.507  Sum_probs=20.6

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      +.+.|.+|+..|.....|..|+.
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~   31 (42)
T 2yte_A            9 KPYSCAECKETFSDNNRLVQHQK   31 (42)
T ss_dssp             CSCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCeECCCCCCccCCHHHHHHHHH
Confidence            46889999999999999999963

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.33  E-value=0.59  Score=28.81  Aligned_cols=23  Identities=22%  Similarity=0.369  Sum_probs=20.9

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      ..+.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (44)
T 2epv_A           11 KPYECNECGKAFIWKSLLIVHER   33 (44)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHG
T ss_pred             cCeECCCCCcccCchHHHHHHHh
Confidence            46899999999999999999974

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.32  E-value=0.64  Score=28.76  Aligned_cols=23  Identities=22%  Similarity=0.534  Sum_probs=20.9

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      ..+.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ep3_A           11 KPYRCAECGKAFTDRSNLFTHQK   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeECCCCCchhCCHHHHHHHHH
Confidence            56899999999999999999974

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=84.31  E-value=0.26  Score=37.55  Aligned_cols=22  Identities=18%  Similarity=0.540  Sum_probs=20.6

Q ss_pred             ccccccceeeeCCHHHHHHhhc
Q 024438          209 VRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       209 ~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      .|.|++|+..|.+...|..|++
T Consensus        74 ~~~C~~C~k~f~~~~~l~~H~~   95 (129)
T 2wbt_A           74 QFVCPLCLMPFSSSVSLKQHIR   95 (129)
T ss_dssp             SEECTTTCCEESSHHHHHHHHH
T ss_pred             CeECCCCCcccCCHhHHHHHHH
Confidence            6899999999999999999985

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=84.25  E-value=0.47  Score=31.03  Aligned_cols=22  Identities=36%  Similarity=0.572  Sum_probs=20.3

Q ss_pred             ccccccceeeeCCHHHHHHhhc
Q 024438          209 VRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       209 ~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      .|.|++|+..|.+...|..|++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~   23 (60)
T 2adr_A            2 SFVCEVCTRAFARQEHLKRHYR   23 (60)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHH
T ss_pred             cCcCCCCccccCCHHHHHHHHH
Confidence            4889999999999999999985

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.07  E-value=0.66  Score=28.61  Aligned_cols=23  Identities=26%  Similarity=0.518  Sum_probs=21.0

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      ..+.|.+|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yrj_A           11 KPYRCGECGKAFAQKANLTQHQR   33 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeECCCCCCccCCHHHHHHHHH
Confidence            46899999999999999999974

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.06  E-value=0.71  Score=28.10  Aligned_cols=23  Identities=26%  Similarity=0.441  Sum_probs=20.9

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      ..+.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2en7_A           11 KPYVCNECGKAFRSKSYLIIHTR   33 (44)
T ss_dssp             SSSCCTTTCCCCSSHHHHHHHHT
T ss_pred             cCeECCCCCCccCCHHHHHHHhh
Confidence            46889999999999999999984

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=84.02  E-value=0.54  Score=32.16  Aligned_cols=23  Identities=17%  Similarity=0.271  Sum_probs=21.1

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        13 k~~~C~~C~k~f~~~~~L~~H~~   35 (72)
T 1x6e_A           13 KPYGCVECGKAFSRSSILVQHQR   35 (72)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCccCCCCCCccCCHHHHHHHHH
Confidence            47999999999999999999985

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=84.00  E-value=0.6  Score=29.32  Aligned_cols=22  Identities=23%  Similarity=0.516  Sum_probs=20.8

Q ss_pred             CCcccccceeeeCCHHHHHHHh
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHI  155 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~  155 (267)
                      +.+.|..|+.+|+....|..|+
T Consensus         7 kp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            7 ARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CCCEETTTTEECSCHHHHHHHH
T ss_pred             cCeECCCCCCccCCHhHccCcC
Confidence            5799999999999999999997

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=83.96  E-value=0.64  Score=30.22  Aligned_cols=24  Identities=17%  Similarity=0.502  Sum_probs=21.1

Q ss_pred             ccccccccceeeeCCHHHHHHhhc
Q 024438          207 DSVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       207 ~~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ...|.|++|+..|.....|..|++
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~   33 (54)
T 2eps_A           10 GKPYICQSCGKGFSRPDHLNGHIK   33 (54)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCCeECCCCCcccCCHHHHHHHHH
Confidence            346899999999999999999974

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.89  E-value=0.65  Score=28.68  Aligned_cols=23  Identities=22%  Similarity=0.517  Sum_probs=20.9

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      +.+.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (45)
T 2epu_A           11 KPFECTHCGKSFRAKGNLVTHQR   33 (45)
T ss_dssp             CSEEETTTTEEESSHHHHHHHHT
T ss_pred             cCccCCCCCCccCChHHHHHHHH
Confidence            46889999999999999999974

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.85  E-value=0.7  Score=28.60  Aligned_cols=23  Identities=17%  Similarity=0.456  Sum_probs=20.9

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      ..+.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2enf_A           11 KPYKCNECGKVFTQNSHLVRHRG   33 (46)
T ss_dssp             CSCBCSSSCCBCSSHHHHHHHHT
T ss_pred             cCeECCCCCcccCCHHHHHHHHH
Confidence            46899999999999999999974

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.78  E-value=0.65  Score=27.99  Aligned_cols=23  Identities=17%  Similarity=0.326  Sum_probs=20.8

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      ..+.|.+|+..|.....|..|+.
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~   31 (41)
T 2ept_A            9 RVYECQECGKSFRQKGSLTLHER   31 (41)
T ss_dssp             CCEECSSSCCEESSHHHHHHHGG
T ss_pred             CCeECCCCCCCcCCHHHHHHHHH
Confidence            46889999999999999999974

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.70  E-value=0.66  Score=28.35  Aligned_cols=23  Identities=26%  Similarity=0.511  Sum_probs=21.0

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      +.+.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2eoj_A           11 NPYECCECGKVFSRKDQLVSHQK   33 (44)
T ss_dssp             CSCEETTTTEECSSHHHHHHHHT
T ss_pred             cCeeCCCCCCccCCHHHHHHHHH
Confidence            46899999999999999999975

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=83.64  E-value=0.34  Score=31.26  Aligned_cols=27  Identities=33%  Similarity=0.758  Sum_probs=22.8

Q ss_pred             CCcccccceeeeCCHHHHHHHhCCchh
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHISGKKH  160 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~GKKH  160 (267)
                      ..+.|.+|+..|.+...|..|+....+
T Consensus        28 ~~~~C~~C~~~f~~~~~l~~H~~~h~~   54 (57)
T 1bbo_A           28 RPYHCTYCNFSFKTKGNLTKHMKSKAH   54 (57)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHSSSS
T ss_pred             CCccCCCCCchhcCHHHHHHHHHHhcc
Confidence            458999999999999999999864433

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=83.61  E-value=0.5  Score=25.79  Aligned_cols=22  Identities=18%  Similarity=0.529  Sum_probs=19.6

Q ss_pred             CcccccceeeeCCHHHHHHHhC
Q 024438          135 PVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       135 ~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      .+.|.+|+..|.....|..|..
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~   23 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIK   23 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHH
T ss_pred             CccCCCCCCccCCHHHHHHHHH
Confidence            4789999999999999999963

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.61  E-value=0.78  Score=28.93  Aligned_cols=23  Identities=17%  Similarity=0.456  Sum_probs=20.4

Q ss_pred             ccccccc--ceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTV--CNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~l--CnVscnSe~~~~sHL~  230 (267)
                      ..|.|+.  |+..|.....|..|++
T Consensus         8 kp~~C~~~~C~k~F~~~~~L~~H~r   32 (38)
T 2eln_A            8 ILLKCPTDGCDYSTPDKYKLQAHLK   32 (38)
T ss_dssp             CCEECSSSSCCCEESCHHHHHHHHH
T ss_pred             CCCCCCCCCCCCccCCHHHHHHHHH
Confidence            4689986  9999999999999974

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.60  E-value=0.71  Score=28.56  Aligned_cols=23  Identities=17%  Similarity=0.462  Sum_probs=20.9

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      +.+.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2epz_A           11 KPFDCIDCGKAFSDHIGLNQHRR   33 (46)
T ss_dssp             CSBCCTTTCCCBSSHHHHHHHHT
T ss_pred             CCeECCCCCceeCCHHHHHHHHH
Confidence            46899999999999999999974

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=83.58  E-value=0.69  Score=27.85  Aligned_cols=22  Identities=18%  Similarity=0.413  Sum_probs=20.3

Q ss_pred             CCcccccceeeeCCHHHHHHHh
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHI  155 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~  155 (267)
                      ..+.|.+|+..|.....|..|+
T Consensus        10 ~~~~C~~C~k~f~~~~~l~~H~   31 (42)
T 2epc_A           10 TPYLCGQCGKSFTQRGSLAVHQ   31 (42)
T ss_dssp             CCEECSSSCCEESSHHHHHHHH
T ss_pred             CCeECCCCCcccCCHHHHHHHh
Confidence            4689999999999999999996

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.57  E-value=0.68  Score=28.64  Aligned_cols=22  Identities=27%  Similarity=0.603  Sum_probs=20.4

Q ss_pred             CCcccccceeeeCCHHHHHHHh
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHI  155 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~  155 (267)
                      ..+.|.+|+..|.....|..|+
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~   32 (46)
T 2em3_A           11 KPYECKVCSKAFTQKAHLAQHQ   32 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHH
T ss_pred             cCeECCCCCcccCCHHHHHHHH
Confidence            4689999999999999999997

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=83.52  E-value=0.64  Score=29.69  Aligned_cols=23  Identities=17%  Similarity=0.508  Sum_probs=20.8

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      +.+.|.+|+..|.....|..|+.
T Consensus         6 kp~~C~~C~k~F~~~~~L~~H~~   28 (48)
T 3iuf_A            6 KPYACDICGKRYKNRPGLSYHYA   28 (48)
T ss_dssp             SCEECTTTCCEESSHHHHHHHHH
T ss_pred             cCEECCCcCcccCCHHHHHHHhh
Confidence            46899999999999999999974

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.51  E-value=0.71  Score=28.11  Aligned_cols=23  Identities=26%  Similarity=0.505  Sum_probs=20.7

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      ..+.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2eof_A           11 KPYECNECQKAFNTKSNLMVHQR   33 (44)
T ss_dssp             CSEECTTTCCEESCHHHHHHHHH
T ss_pred             CCeECCCCCcccCCHhHHHHHHH
Confidence            46899999999999999999973

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.49  E-value=0.72  Score=28.60  Aligned_cols=23  Identities=17%  Similarity=0.332  Sum_probs=21.1

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      ..+.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2ytp_A           11 RHYECSECGKAFARKSTLIMHQR   33 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeECCcCCcccCCHHHHHHHHH
Confidence            46889999999999999999975

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.48  E-value=0.68  Score=28.57  Aligned_cols=23  Identities=22%  Similarity=0.441  Sum_probs=20.9

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      ..+.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yts_A           11 KPYICNECGKSFIQKSHLNRHRR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHGG
T ss_pred             cCEECCCCChhhCChHHHHHHHH
Confidence            46899999999999999999974

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.40  E-value=0.69  Score=28.72  Aligned_cols=23  Identities=13%  Similarity=0.339  Sum_probs=20.8

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      ..+.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2en9_A           11 KLFKCNECKKTFTQSSSLTVHQR   33 (46)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCEECCccCcccCCHHHHHHHHH
Confidence            46899999999999999999974

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.36  E-value=0.69  Score=28.55  Aligned_cols=23  Identities=17%  Similarity=0.498  Sum_probs=21.0

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      ..+.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eq3_A           11 KPYECNQCGKAFSVRSSLTTHQA   33 (46)
T ss_dssp             CSSEETTTTEECSSHHHHHHHHT
T ss_pred             CCeECCCCChhhCCHHHHHHHHH
Confidence            46899999999999999999974

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=83.35  E-value=0.67  Score=31.75  Aligned_cols=24  Identities=17%  Similarity=0.349  Sum_probs=21.5

Q ss_pred             ccccccccceeeeCCHHHHHHhhc
Q 024438          207 DSVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       207 ~~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ...|.|.+|+..|.+...|..|++
T Consensus        15 ~~~~~C~~C~k~f~~~~~l~~H~~   38 (74)
T 2lce_A           15 DKPYKCDRCQASFRYKGNLASHKT   38 (74)
T ss_dssp             CCSBCCTTSSCCBSCHHHHHHHHH
T ss_pred             CCCeECCCCCceeCCHHHHHHHHH
Confidence            447999999999999999999974

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.31  E-value=0.71  Score=28.46  Aligned_cols=23  Identities=26%  Similarity=0.527  Sum_probs=20.8

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      ..+.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytf_A           11 KPFECSECQKAFNTKSNLIVHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcCCCCCCcccCCHHHHHHHHH
Confidence            56899999999999999999974

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.28  E-value=0.67  Score=32.01  Aligned_cols=23  Identities=26%  Similarity=0.601  Sum_probs=20.9

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus         6 k~~~C~~C~k~f~~~~~L~~H~~   28 (78)
T 2d9h_A            6 SGLQCEICGFTCRQKASLNWHQR   28 (78)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH
T ss_pred             cCeECCCCCCeeCCHHHHHHHHH
Confidence            46899999999999999999974

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=83.23  E-value=0.72  Score=27.38  Aligned_cols=23  Identities=17%  Similarity=0.530  Sum_probs=20.3

Q ss_pred             ccccccc--ceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTV--CNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~l--CnVscnSe~~~~sHL~  230 (267)
                      ..|.|.+  |+..|.+...|..|++
T Consensus         7 k~~~C~~~~C~k~f~~~~~L~~H~~   31 (37)
T 1va1_A            7 KQHICHIQGCGKVYGKTSHLRAHLR   31 (37)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHH
T ss_pred             CCCCCCCCCCCCccCCHHHHHHHHH
Confidence            3688996  9999999999999975

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=83.22  E-value=0.56  Score=32.48  Aligned_cols=22  Identities=14%  Similarity=0.368  Sum_probs=20.5

Q ss_pred             ccccccceeeeCCHHHHHHhhc
Q 024438          209 VRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       209 ~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      .|.|++|+..|+....|..|++
T Consensus         4 py~C~~C~k~F~~~~~L~~H~~   25 (60)
T 4gzn_C            4 PFFCNFCGKTYRDASGLSRHRR   25 (60)
T ss_dssp             CEECTTTCCEESSHHHHHHHHH
T ss_pred             CccCCCCCCEeCCHHHHHHHHH
Confidence            6899999999999999999975

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.21  E-value=0.72  Score=28.54  Aligned_cols=23  Identities=17%  Similarity=0.475  Sum_probs=20.9

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      +.+.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2yti_A           11 KPYKCNECGKVFTQNSHLARHRG   33 (46)
T ss_dssp             CTTCCSSSCCCCSSHHHHHHHHT
T ss_pred             cCeECCCCCcccCChhHHHHHhH
Confidence            46889999999999999999974

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.19  E-value=0.69  Score=28.60  Aligned_cols=23  Identities=17%  Similarity=0.332  Sum_probs=20.8

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      ..+.|.+|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emi_A           11 RHYECSECGKAFIQKSTLSMHQR   33 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHG
T ss_pred             CCCCCCCCCcccCCHHHHHHHHh
Confidence            46899999999999999999974

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.17  E-value=0.76  Score=28.50  Aligned_cols=23  Identities=22%  Similarity=0.466  Sum_probs=20.9

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      ..+.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em6_A           11 KCYKCDVCGKEFSQSSHLQTHQR   33 (46)
T ss_dssp             CCCBCSSSCCBCSSHHHHHHHHT
T ss_pred             CCeECCCCCcccCCHHHHHHHHH
Confidence            46899999999999999999974

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.12  E-value=0.72  Score=28.61  Aligned_cols=23  Identities=17%  Similarity=0.410  Sum_probs=20.7

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      ..+.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emf_A           11 KHFECTECGKAFTRKSTLSMHQK   33 (46)
T ss_dssp             CCEECSSSCCEESCHHHHHHHGG
T ss_pred             CCeECCCCCchhCCHHHHHHHHH
Confidence            46899999999999999999963

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.10  E-value=0.83  Score=28.32  Aligned_cols=23  Identities=17%  Similarity=0.378  Sum_probs=21.0

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      ..+.|.+|+..|.+...|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em5_A           11 KSHQCHECGRGFTLKSHLNQHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeECCcCCCccCCHHHHHHHHH
Confidence            56899999999999999999974

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.07  E-value=0.7  Score=27.90  Aligned_cols=23  Identities=17%  Similarity=0.499  Sum_probs=20.8

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      +.+.|.+|+..|.....|..|+.
T Consensus        10 k~~~C~~C~k~f~~~~~L~~H~~   32 (42)
T 2en2_A           10 KPYKCETCGARFVQVAHLRAHVL   32 (42)
T ss_dssp             CSEECTTTCCEESSHHHHHHHTH
T ss_pred             CCEeCCCcChhhCCHHHHHHHHH
Confidence            46899999999999999999973

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=83.05  E-value=0.54  Score=31.34  Aligned_cols=23  Identities=22%  Similarity=0.401  Sum_probs=20.7

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus         9 k~~~C~~C~k~f~~~~~l~~H~~   31 (66)
T 2drp_A            9 HTYRCKVCSRVYTHISNFCRHYV   31 (66)
T ss_dssp             TEEECTTTCCEESSHHHHHHHHH
T ss_pred             cceECCCCcchhCCHHHHHHHHH
Confidence            46899999999999999999964

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.00  E-value=0.69  Score=28.54  Aligned_cols=23  Identities=22%  Similarity=0.442  Sum_probs=20.9

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      ..+.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ep1_A           11 KPYECSDCGKSFIKKSQLHVHQR   33 (46)
T ss_dssp             CSSCCSSSCCCCSSHHHHHHHHG
T ss_pred             CCcCCCCCCchhCCHHHHHHHHH
Confidence            46899999999999999999974

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.99  E-value=0.79  Score=28.34  Aligned_cols=23  Identities=22%  Similarity=0.493  Sum_probs=21.0

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      ..+.|.+|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ep0_A           11 KPYKCDVCHKSFRYGSSLTVHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeeCcccCcccCChHHHHHHHH
Confidence            46899999999999999999974

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.98  E-value=0.74  Score=28.39  Aligned_cols=23  Identities=22%  Similarity=0.450  Sum_probs=20.8

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      ..+.|.+|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eor_A           11 KPYNCEECGKAFIHDSQLQEHQR   33 (46)
T ss_dssp             CSEECTTTCCEESSHHHHHHHHH
T ss_pred             cCccCCCCCCCcCCHHHHHHHHH
Confidence            46899999999999999999973

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=82.92  E-value=0.46  Score=25.71  Aligned_cols=22  Identities=18%  Similarity=0.477  Sum_probs=19.5

Q ss_pred             CcccccceeeeCCHHHHHHHhC
Q 024438          135 PVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       135 ~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      .+.|.+|+..|.....|..|..
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~   23 (29)
T 2m0e_A            2 EHKCPHCDKKFNQVGNLKAHLK   23 (29)
T ss_dssp             CCCCSSCCCCCCTTTHHHHHHH
T ss_pred             CCcCCCCCcccCCHHHHHHHHH
Confidence            4779999999999999999973

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=82.91  E-value=0.74  Score=28.56  Aligned_cols=23  Identities=17%  Similarity=0.476  Sum_probs=20.8

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      +.+.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emj_A           11 KPFECAECGKSFSISSQLATHQR   33 (46)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHH
T ss_pred             CCEECCCCCcccCCHHHHHHHHH
Confidence            46899999999999999999973

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.86  E-value=0.74  Score=28.48  Aligned_cols=23  Identities=22%  Similarity=0.561  Sum_probs=20.8

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      ..+.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eml_A           11 KPYECSVCGKAFSHRQSLSVHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHG
T ss_pred             CCeeCCCcCCccCCHHHHHHHHH
Confidence            46899999999999999999974

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=83.46  E-value=0.24  Score=27.37  Aligned_cols=22  Identities=23%  Similarity=0.647  Sum_probs=19.7

Q ss_pred             CcccccceeeeCCHHHHHHHhC
Q 024438          135 PVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       135 ~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      .+.|.+|+..|.....|..|+.
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~   23 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVR   23 (29)
Confidence            4789999999999999999974

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.69  E-value=0.78  Score=28.37  Aligned_cols=23  Identities=17%  Similarity=0.394  Sum_probs=20.8

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      +.+.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em7_A           11 KPYKCEECGKGFICRRDLYTHHM   33 (46)
T ss_dssp             CSEECSSSCCEESCHHHHHHHGG
T ss_pred             cCccCCCccchhCCHHHHHHHHH
Confidence            46899999999999999999964

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.62  E-value=0.81  Score=28.28  Aligned_cols=23  Identities=17%  Similarity=0.483  Sum_probs=20.9

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      +.+.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ene_A           11 KPYKCNECGKVFRHNSYLSRHQR   33 (46)
T ss_dssp             SSEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeECCCCCchhCChHHHHHHHh
Confidence            46899999999999999999975

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.62  E-value=0.85  Score=28.25  Aligned_cols=23  Identities=26%  Similarity=0.527  Sum_probs=20.9

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      +.+.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytq_A           11 KPYGCSECGKAFSSKSYLIIHMR   33 (46)
T ss_dssp             CSCBCSSSCCBCSCHHHHHHHHT
T ss_pred             CCcCCCccChhhCChHHHHHHHH
Confidence            46899999999999999999975

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.61  E-value=0.73  Score=28.51  Aligned_cols=23  Identities=17%  Similarity=0.493  Sum_probs=20.8

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      ..+.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eq2_A           11 KPYQCNECGKAFSQTSKLARHQR   33 (46)
T ss_dssp             CSSSCCSSCCCCSSHHHHHHHGG
T ss_pred             CCeECCCCCcccCCHHHHHHHHH
Confidence            46889999999999999999973

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.59  E-value=0.77  Score=28.12  Aligned_cols=23  Identities=17%  Similarity=0.407  Sum_probs=20.8

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      ..+.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2emb_A           11 KRYECSKCQATFNLRKHLIQHQK   33 (44)
T ss_dssp             SSEECTTTCCEESCHHHHHHHGG
T ss_pred             CCeECCCCCCccCCHHHHHHHHH
Confidence            46899999999999999999974

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.52  E-value=0.76  Score=28.51  Aligned_cols=23  Identities=17%  Similarity=0.498  Sum_probs=20.8

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      ..+.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yth_A           11 KPFQCEECGKRFTQNSHLHSHQR   33 (46)
T ss_dssp             SSBCCSSSCCCBSSHHHHHHHGG
T ss_pred             cCCCCCCCCcccCCHHHHHHHHH
Confidence            46899999999999999999974

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.51  E-value=0.78  Score=28.29  Aligned_cols=23  Identities=17%  Similarity=0.371  Sum_probs=20.8

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      ..+.|.+|+..|.+...|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eme_A           11 KPYVCDYCGKAFGLSAELVRHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHG
T ss_pred             CCeECCCCChhhCCHHHHHHHHH
Confidence            46899999999999999999973

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.50  E-value=0.82  Score=28.26  Aligned_cols=23  Identities=30%  Similarity=0.525  Sum_probs=21.0

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      +.+.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ysp_A           11 KPYKCEKCGKGYNSKFNLDMHQK   33 (46)
T ss_dssp             CSEEETTTTEEESCHHHHHHHHT
T ss_pred             CCeECCCCCCccCCHHHHHHHHH
Confidence            46899999999999999999975

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.46  E-value=0.79  Score=28.41  Aligned_cols=23  Identities=17%  Similarity=0.437  Sum_probs=20.8

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      +.+.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytt_A           11 KPYQCSECGKSFSGSYRLTQHWI   33 (46)
T ss_dssp             CTTCCSSSCCCCSSHHHHHHHHT
T ss_pred             CCeeCCCCCcccCCHHHHHHHHH
Confidence            46889999999999999999974

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.45  E-value=0.74  Score=28.48  Aligned_cols=23  Identities=17%  Similarity=0.469  Sum_probs=20.9

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      ..+.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eq1_A           11 KPYKCNECGKAFRAHSNLTTHQV   33 (46)
T ss_dssp             CCCCCTTTTCCCSSHHHHHHHHT
T ss_pred             CCeECCcCChhhCCHHHHHHHHH
Confidence            56899999999999999999974

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.44  E-value=0.79  Score=28.41  Aligned_cols=22  Identities=23%  Similarity=0.499  Sum_probs=20.4

Q ss_pred             CCcccccceeeeCCHHHHHHHh
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHI  155 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~  155 (267)
                      ..+.|.+|+..|.....|..|+
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~   32 (46)
T 2yto_A           11 KPYKCSDCGKAFTRKSGLHIHQ   32 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHH
T ss_pred             CCEECcccCCccCCHhHHHHHH
Confidence            4689999999999999999997

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.32  E-value=0.86  Score=28.07  Aligned_cols=23  Identities=17%  Similarity=0.361  Sum_probs=20.9

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      ..+.|.+|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eop_A           11 KPHECRECGKSFSFNSQLIVHQR   33 (46)
T ss_dssp             CSCBCTTTCCBCSSHHHHHHHHT
T ss_pred             CCeeCCCCCchhCCHHHHHHHHH
Confidence            46899999999999999999974

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.27  E-value=0.78  Score=28.44  Aligned_cols=23  Identities=17%  Similarity=0.385  Sum_probs=20.6

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      +.+.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eoh_A           11 KPYECKECRKTFIQIGHLNQHKR   33 (46)
T ss_dssp             CSCCCSSSCCCCSSHHHHHHHHH
T ss_pred             CCcCCCCcCchhCCHHHHHHHHH
Confidence            46889999999999999999963

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.23  E-value=0.59  Score=27.44  Aligned_cols=22  Identities=23%  Similarity=0.599  Sum_probs=20.1

Q ss_pred             CCcccccceeeeCCH-HHHHHHh
Q 024438          134 QPVRCVVCNIDCNSK-DVFQKHI  155 (267)
Q Consensus       134 ~~~~C~LCnVsctS~-~~l~sH~  155 (267)
                      ..+.|.+|+..|... ..|..|+
T Consensus         8 k~~~C~~C~k~f~~~~~~L~~H~   30 (37)
T 2elp_A            8 RAMKCPYCDFYFMKNGSDLQRHI   30 (37)
T ss_dssp             CCEECSSSSCEECSSCHHHHHHH
T ss_pred             CCeECCCCChhhccCHHHHHHHH
Confidence            468999999999999 9999997

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=82.23  E-value=0.59  Score=25.71  Aligned_cols=21  Identities=24%  Similarity=0.602  Sum_probs=19.2

Q ss_pred             CcccccceeeeCCHHHHHHHh
Q 024438          135 PVRCVVCNIDCNSKDVFQKHI  155 (267)
Q Consensus       135 ~~~C~LCnVsctS~~~l~sH~  155 (267)
                      .+.|..|+..|.....|..|+
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~   22 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHA   22 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHH
T ss_pred             CcCCcccCcccCChHHHHHHH
Confidence            478999999999999999994

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.23  E-value=0.81  Score=28.19  Aligned_cols=23  Identities=17%  Similarity=0.511  Sum_probs=20.9

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      +.+.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytr_A           11 KPYKCNECGKAFSQTSKLARHQR   33 (46)
T ss_dssp             CTTCCTTTCCCCSSHHHHHHHHT
T ss_pred             cCcCCCCCCCccCCHHHHHHHHH
Confidence            46889999999999999999974

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.22  E-value=0.84  Score=28.13  Aligned_cols=22  Identities=23%  Similarity=0.489  Sum_probs=20.3

Q ss_pred             CCcccccceeeeCCHHHHHHHh
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHI  155 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~  155 (267)
                      ..+.|.+|+..|.+...|..|+
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~   32 (46)
T 2eov_A           11 KPYKCSDCGKSFTWKSRLRIHQ   32 (46)
T ss_dssp             CSCBCSSSCCBCSSHHHHHHHH
T ss_pred             CCccCCccChhhCCHHHHHHHH
Confidence            4689999999999999999996

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.20  E-value=0.59  Score=28.18  Aligned_cols=23  Identities=30%  Similarity=0.582  Sum_probs=20.8

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      ..+.|.+|+..|.....|..|+.
T Consensus        10 k~~~C~~C~k~f~~~~~L~~H~~   32 (42)
T 2ytb_A           10 KPYRCDQCGKAFSQKGSLIVHIR   32 (42)
T ss_dssp             CSBCCTTTTCCBSSHHHHHTTGG
T ss_pred             CCeeCCCccchhCCHHHHHHHHH
Confidence            46889999999999999999974

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=82.07  E-value=0.72  Score=31.84  Aligned_cols=23  Identities=13%  Similarity=0.340  Sum_probs=20.8

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.+...|..|++
T Consensus        14 k~~~C~~C~k~f~~~~~L~~H~~   36 (77)
T 2ct1_A           14 KPYECYICHARFTQSGTMKMHIL   36 (77)
T ss_dssp             CSEECTTTCCEESCHHHHHHHHH
T ss_pred             CCeECCCcCchhCCHHHHHHHHH
Confidence            46899999999999999999974

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.05  E-value=0.8  Score=28.39  Aligned_cols=22  Identities=23%  Similarity=0.541  Sum_probs=20.3

Q ss_pred             CCcccccceeeeCCHHHHHHHh
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHI  155 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~  155 (267)
                      ..+.|.+|+..|.....|..|+
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~   32 (46)
T 2eoz_A           11 KPYSCNVCGKAFVLSAHLNQHL   32 (46)
T ss_dssp             CSEEETTTTEEESSHHHHHHHH
T ss_pred             CCeECcccChhhCCHHHHHHHH
Confidence            4689999999999999999996

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.02  E-value=0.76  Score=28.33  Aligned_cols=23  Identities=17%  Similarity=0.446  Sum_probs=20.8

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      ..+.|.+|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2eoe_A           11 KPYKCNECGKVFTQNSHLANHQR   33 (46)
T ss_dssp             CSSEETTTTEECSSHHHHHHHHG
T ss_pred             CCeECCCcChhhCCHHHHHHHHH
Confidence            56899999999999999999973

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=81.96  E-value=0.89  Score=32.30  Aligned_cols=24  Identities=25%  Similarity=0.512  Sum_probs=18.1

Q ss_pred             ccccccccceeeeCCHHHHHHhhc
Q 024438          207 DSVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       207 ~~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ...|.|.+|+..|.+...|..|++
T Consensus        34 ~~~~~C~~C~~~f~~~~~l~~H~~   57 (96)
T 2dmd_A           34 VKPYKCKTCDYAAADSSSLNKHLR   57 (96)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCCEeCCCCCCccCCHHHHHHHHH
Confidence            345778888888888888888864

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.95  E-value=0.89  Score=28.09  Aligned_cols=23  Identities=17%  Similarity=0.440  Sum_probs=21.0

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      ..+.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2eq0_A           11 KPYKCHECGKVFRRNSHLARHQL   33 (46)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHT
T ss_pred             CCeECCCCCchhCCHHHHHHHHH
Confidence            56899999999999999999974

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=82.74  E-value=0.28  Score=27.09  Aligned_cols=23  Identities=22%  Similarity=0.647  Sum_probs=20.2

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      ..+.|.+|+..|.....|..|..
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~   24 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVR   24 (30)
Confidence            35789999999999999999974

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.87  E-value=0.86  Score=28.08  Aligned_cols=22  Identities=18%  Similarity=0.519  Sum_probs=20.4

Q ss_pred             CCcccccceeeeCCHHHHHHHh
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHI  155 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~  155 (267)
                      ..+.|.+|+..|.....|..|+
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~   32 (46)
T 2eow_A           11 KPYKCNECGKAFRARSSLAIHQ   32 (46)
T ss_dssp             CCEECTTSCCEESSHHHHHHHH
T ss_pred             CCeeccccCChhcCHHHHHHHH
Confidence            4689999999999999999997

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=81.81  E-value=0.92  Score=28.02  Aligned_cols=23  Identities=13%  Similarity=0.351  Sum_probs=20.9

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      +.+.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ema_A           11 KRYKCNECGKVFSRNSQLSQHQK   33 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHT
T ss_pred             cCcCCCCCcchhCCHHHHHHHHH
Confidence            46899999999999999999974

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.76  E-value=0.88  Score=28.10  Aligned_cols=22  Identities=23%  Similarity=0.472  Sum_probs=20.3

Q ss_pred             CCcccccceeeeCCHHHHHHHh
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHI  155 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~  155 (267)
                      ..+.|.+|+..|.....|..|+
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~   32 (46)
T 2ytj_A           11 KPYICAECGKAFTIRSNLIKHQ   32 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHH
T ss_pred             cCeECCCCChhhCCHHHHHHHH
Confidence            4689999999999999999996

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=81.75  E-value=0.82  Score=28.43  Aligned_cols=23  Identities=22%  Similarity=0.288  Sum_probs=20.6

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      ..+.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2eom_A           11 RGHRCSDCGKFFLQASNFIQHRR   33 (46)
T ss_dssp             SSCCCSSSCCCCSSHHHHHHHHH
T ss_pred             CCcCCCCCCCeeCChHHHHHHHH
Confidence            46889999999999999999973

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.61  E-value=0.9  Score=28.06  Aligned_cols=23  Identities=22%  Similarity=0.582  Sum_probs=20.9

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      ..+.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ep2_A           11 KPYECSICGKSFTKKSQLHVHQQ   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             cCcCCCCCCcccCCHHHHHHHHH
Confidence            56899999999999999999973

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.58  E-value=0.9  Score=28.07  Aligned_cols=23  Identities=22%  Similarity=0.401  Sum_probs=20.7

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      ..+.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emy_A           11 NPYECHECGKAFSRKYQLISHQR   33 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH
T ss_pred             cCcCCCCCCcccCcHHHHHHHHH
Confidence            46899999999999999999963

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=81.54  E-value=0.87  Score=28.05  Aligned_cols=23  Identities=22%  Similarity=0.401  Sum_probs=20.8

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      ..+.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2el4_A           11 KPYGCSQCAKTFSLKSQLIVHQR   33 (46)
T ss_dssp             CSEECSSSSCEESSHHHHHHHGG
T ss_pred             CceECCCCCchhCCHHHHHHHHH
Confidence            46899999999999999999973

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.51  E-value=0.97  Score=27.88  Aligned_cols=23  Identities=17%  Similarity=0.491  Sum_probs=21.0

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      +.+.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (47)
T 2epx_A           11 KPYECIECGKAFIQNTSLIRHWR   33 (47)
T ss_dssp             CSBCCSSSCCCBSSHHHHHHHHT
T ss_pred             CCEECCccCchhCChHHHHHHhH
Confidence            46899999999999999999975

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=81.47  E-value=0.86  Score=31.43  Aligned_cols=24  Identities=13%  Similarity=0.283  Sum_probs=21.6

Q ss_pred             ccccccccceeeeCCHHHHHHhhc
Q 024438          207 DSVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       207 ~~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ...|.|++|+..|.+...|..|++
T Consensus        16 ~~~~~C~~C~~~f~~~~~l~~H~~   39 (77)
T 2cot_A           16 RRRYKCDECGKSFSHSSDLSKHRR   39 (77)
T ss_dssp             SCSSBCSSSCCBCSCHHHHHHHHT
T ss_pred             CCCEECCCCCcccCCHHHHHHHHH
Confidence            347999999999999999999986

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=81.38  E-value=0.91  Score=27.96  Aligned_cols=23  Identities=22%  Similarity=0.440  Sum_probs=20.9

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      +.+.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em9_A           11 KPYNCKECGKSFRWASCLLKHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHGG
T ss_pred             cCeECCccccccCChHHHHHHHH
Confidence            56899999999999999999973

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=81.35  E-value=0.1  Score=30.33  Aligned_cols=22  Identities=18%  Similarity=0.458  Sum_probs=19.7

Q ss_pred             ccccccceeeeCCHHHHHHhhc
Q 024438          209 VRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       209 ~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      .|.|++|+..|.+...|..|++
T Consensus         2 p~~C~~C~k~f~~~~~L~~H~~   23 (32)
T 2kfq_A            2 AFACPACPKRFMRSDALSKHIK   23 (32)
T ss_dssp             CSSSSSSCTTHHHHHTTSSSTT
T ss_pred             CCCCCCCCcccCCHHHHHHHHH
Confidence            4789999999999999999975

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=81.34  E-value=1.1  Score=27.74  Aligned_cols=22  Identities=18%  Similarity=0.454  Sum_probs=20.3

Q ss_pred             CCcccccceeeeCCHHHHHHHh
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHI  155 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~  155 (267)
                      +.+.|.+|+..|.....|..|+
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~   32 (46)
T 2emk_A           11 KPYECKECGKAFSQTTHLIQHQ   32 (46)
T ss_dssp             CSCBCSSSCCBCSCHHHHHHHH
T ss_pred             CceECCCCCchhCCHHHHHHHH
Confidence            4689999999999999999997

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.31  E-value=0.86  Score=28.15  Aligned_cols=23  Identities=17%  Similarity=0.522  Sum_probs=20.8

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      ..+.|.+|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2en1_A           11 KPFKCEECGKRFTQNSQLHSHQR   33 (46)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGG
T ss_pred             CCeeCCCCCcccCCHHHHHHHHH
Confidence            46899999999999999999973

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=81.27  E-value=0.96  Score=27.84  Aligned_cols=23  Identities=13%  Similarity=0.258  Sum_probs=20.8

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      ..+.|.+|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2en8_A           11 KSHTCDECGKNFCYISALRIHQR   33 (46)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHT
T ss_pred             CCeECCCcCcccCCHHHHHHHHH
Confidence            46899999999999999999974

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.24  E-value=0.94  Score=28.04  Aligned_cols=23  Identities=17%  Similarity=0.501  Sum_probs=20.6

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      +.+.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em2_A           11 KPFKCKECGKAFRQNIHLASHLR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCEECCcCCchhCCHHHHHHHHH
Confidence            46899999999999999999963

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.22  E-value=0.89  Score=28.08  Aligned_cols=23  Identities=17%  Similarity=0.475  Sum_probs=20.6

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      ..+.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2ytn_A           11 KPYKCNECGKVFTQNSHLARHRG   33 (46)
T ss_dssp             SSCBCTTTCCBCSSHHHHHHHGG
T ss_pred             cCeECCCCCCeeCCHHHHHHHhh
Confidence            46889999999999999999963

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.10  E-value=0.69  Score=28.62  Aligned_cols=22  Identities=23%  Similarity=0.596  Sum_probs=20.4

Q ss_pred             CCcccccceeeeCCHHHHHHHh
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHI  155 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~  155 (267)
                      ..+.|.+|+..|.....|..|+
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~   32 (46)
T 2en3_A           11 KPFQCKECGMNFSWSCSLFKHL   32 (46)
T ss_dssp             CSEECSSSCCEESSSHHHHHHH
T ss_pred             CCeeCcccChhhCCHHHHHHHH
Confidence            4689999999999999999997

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=81.04  E-value=0.95  Score=28.04  Aligned_cols=23  Identities=22%  Similarity=0.515  Sum_probs=20.6

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      +.+.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em4_A           11 RPYECIECGKAFKTKSSLICHRR   33 (46)
T ss_dssp             SSEECSSSCCEESSHHHHHHHHH
T ss_pred             cCcCCCCCCCccCCHHHHHHHHH
Confidence            46899999999999999999963

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.99  E-value=0.96  Score=27.92  Aligned_cols=22  Identities=27%  Similarity=0.585  Sum_probs=20.4

Q ss_pred             CCcccccceeeeCCHHHHHHHh
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHI  155 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~  155 (267)
                      ..+.|.+|+..|.....|..|+
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~   32 (46)
T 2emh_A           11 RPYICTVCGKAFTDRSNLIKHQ   32 (46)
T ss_dssp             CSEECTTTCCEESSHHHHHHHH
T ss_pred             CCcCCCCCCchhCCHHHHHHHH
Confidence            5689999999999999999997

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=80.98  E-value=0.98  Score=27.71  Aligned_cols=22  Identities=14%  Similarity=0.421  Sum_probs=20.3

Q ss_pred             CCcccccceeeeCCHHHHHHHh
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHI  155 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~  155 (267)
                      ..+.|.+|+..|.....|..|+
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~   30 (43)
T 2yrm_A            9 GAFFCNECDCRFSEEASLKRHT   30 (43)
T ss_dssp             CCBCCSSSCCCBSSHHHHHHHH
T ss_pred             CCEECCCCCCeeCChHHHHHHH
Confidence            4688999999999999999996

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.89  E-value=0.67  Score=28.78  Aligned_cols=23  Identities=22%  Similarity=0.528  Sum_probs=20.8

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      ..+.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2enh_A           11 KPYECDVCRKAFSHHASLTQHQR   33 (46)
T ss_dssp             SSCBCTTTCCBCSSSHHHHHHGG
T ss_pred             CCcCCCCcCchhCCHHHHHHHHH
Confidence            46889999999999999999974

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=80.87  E-value=0.85  Score=26.87  Aligned_cols=22  Identities=18%  Similarity=0.351  Sum_probs=19.8

Q ss_pred             ccccc--cceeeeCCHHHHHHhhc
Q 024438          209 VRVCT--VCNIACNGQEAFNDHLS  230 (267)
Q Consensus       209 ~~~C~--lCnVscnSe~~~~sHL~  230 (267)
                      .|.|.  .|+..|.+...|..|++
T Consensus         6 ~~~C~~~~C~k~f~~~~~L~~H~~   29 (38)
T 1bhi_A            6 PFLCTAPGCGQRFTNEDHLAVHKH   29 (38)
T ss_dssp             CEECCCTTTCCEESSHHHHHHHHH
T ss_pred             ceECCCCCCCcccCCHHHHHHHHH
Confidence            68899  59999999999999974

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=80.83  E-value=1.1  Score=24.26  Aligned_cols=22  Identities=18%  Similarity=0.395  Sum_probs=19.8

Q ss_pred             Ccccc--cceeeeCCHHHHHHHhC
Q 024438          135 PVRCV--VCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       135 ~~~C~--LCnVsctS~~~l~sH~~  156 (267)
                      .+.|.  .|+..|.....|..|..
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~   25 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKK   25 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHG
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHH
Confidence            46799  99999999999999974

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.79  E-value=0.98  Score=27.60  Aligned_cols=22  Identities=27%  Similarity=0.552  Sum_probs=20.3

Q ss_pred             CCcccccceeeeCCHHHHHHHh
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHI  155 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~  155 (267)
                      +.+.|.+|+..|.....|..|+
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~   30 (44)
T 2emx_A            9 KPFGCSCCEKAFSSKSYLLVHQ   30 (44)
T ss_dssp             CCEECSSSSCEESSHHHHHHHH
T ss_pred             cCccCCCCCcccCCHHHHHHHH
Confidence            4689999999999999999996

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.78  E-value=1  Score=27.74  Aligned_cols=23  Identities=17%  Similarity=0.398  Sum_probs=20.7

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      ..+.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2emm_A           11 RPHKCNECGKSFIQSAHLIQHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCeeCCCCChhhCCHHHHHHHHH
Confidence            56899999999999999999973

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=80.69  E-value=0.96  Score=28.00  Aligned_cols=23  Identities=22%  Similarity=0.436  Sum_probs=20.9

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      +.+.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2el6_A           11 NPYKCSQCEKSFSGKLRLLVHQR   33 (46)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHG
T ss_pred             CCeECCCCCcccCCHHHHHHHHH
Confidence            46899999999999999999974

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.62  E-value=0.77  Score=28.48  Aligned_cols=23  Identities=13%  Similarity=0.369  Sum_probs=20.9

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      +.+.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eoy_A           11 KCFKCNKCEKTFSCSKYLTQHER   33 (46)
T ss_dssp             CCEECSSSCCEESSSHHHHHHHT
T ss_pred             CCEECcCCCCcCCCHHHHHHHHH
Confidence            46899999999999999999974

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.55  E-value=0.98  Score=27.96  Aligned_cols=23  Identities=22%  Similarity=0.469  Sum_probs=20.7

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      +.+.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2elz_A           11 KPYKCEDCGKGYNRRLNLDMHQR   33 (46)
T ss_dssp             SSCBCSSSCCBCSSHHHHHHHGG
T ss_pred             CCeeCcccCchhCCHHHHHHHHH
Confidence            46899999999999999999964

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.55  E-value=0.97  Score=27.81  Aligned_cols=22  Identities=18%  Similarity=0.339  Sum_probs=20.2

Q ss_pred             CCcccccceeeeCCHHHHHHHh
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHI  155 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~  155 (267)
                      ..+.|.+|+..|.....|..|+
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~   32 (46)
T 2eq4_A           11 KLYNCKECGKSFSRAPCLLKHE   32 (46)
T ss_dssp             CCCCBTTTTBCCSCHHHHHHHH
T ss_pred             CCeECCCCCCccCchHHHHHHH
Confidence            4688999999999999999996

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.54  E-value=1  Score=27.88  Aligned_cols=22  Identities=18%  Similarity=0.531  Sum_probs=20.3

Q ss_pred             CCcccccceeeeCCHHHHHHHh
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHI  155 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~  155 (267)
                      ..+.|.+|+..|.....|..|.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~   32 (46)
T 2eoo_A           11 RPYGCNECGKNFGRHSHLIEHL   32 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHH
T ss_pred             CCEEccccCcccCCHHHHHHHH
Confidence            4689999999999999999996

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=80.53  E-value=0.94  Score=27.96  Aligned_cols=23  Identities=13%  Similarity=0.408  Sum_probs=20.7

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      +.+.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2em0_A           11 KTWKCRECDMCFSQASSLRLHQN   33 (46)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHGG
T ss_pred             cCeECCCCCcccCCHHHHHHHHH
Confidence            45889999999999999999974

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.46  E-value=0.99  Score=27.95  Aligned_cols=23  Identities=17%  Similarity=0.567  Sum_probs=20.8

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      ..+.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2emz_A           11 RPFKCNECGKGFGRRSHLAGHLR   33 (46)
T ss_dssp             CSCCCSSSCCCCSSHHHHHHHHH
T ss_pred             CCeECCCCCcccCCHHHHHHHHH
Confidence            46899999999999999999974

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.44  E-value=1  Score=27.83  Aligned_cols=23  Identities=22%  Similarity=0.479  Sum_probs=20.8

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      +.+.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em8_A           11 KPYKCVECGKGYKRRLDLDFHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCeECcccCchhCCHHHHHHHHH
Confidence            56899999999999999999973

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=80.32  E-value=0.99  Score=29.19  Aligned_cols=23  Identities=22%  Similarity=0.603  Sum_probs=20.7

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      ..+.|.+|+..|.....|..|+.
T Consensus        23 k~~~C~~C~k~f~~~~~L~~H~~   45 (54)
T 1yui_A           23 QPATCPICYAVIRQSRNLRRHLE   45 (54)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHH
T ss_pred             CCccCCCCCcccCCHHHHHHHHH
Confidence            46899999999999999999973

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.28  E-value=0.75  Score=27.29  Aligned_cols=21  Identities=19%  Similarity=0.539  Sum_probs=19.5

Q ss_pred             CCcccccceeeeCCHHHHHHH
Q 024438          134 QPVRCVVCNIDCNSKDVFQKH  154 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH  154 (267)
                      +.+.|.+|+..|.....|..|
T Consensus         8 k~~~C~~C~k~f~~~~~L~~H   28 (37)
T 2elm_A            8 HLYYCSQCHYSSITKNCLKRH   28 (37)
T ss_dssp             CEEECSSSSCEEECHHHHHHH
T ss_pred             cCeECCCCCcccCCHHHHHHH
Confidence            458899999999999999999

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.23  E-value=1.1  Score=27.64  Aligned_cols=22  Identities=18%  Similarity=0.394  Sum_probs=20.4

Q ss_pred             CCcccccceeeeCCHHHHHHHh
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHI  155 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~  155 (267)
                      ..+.|.+|+..|.....|..|+
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~   32 (46)
T 2emp_A           11 KPYMCNECGKAFSVYSSLTTHQ   32 (46)
T ss_dssp             CSEECSSSCCEESCHHHHHHHH
T ss_pred             cCeECCCCCchhCCHHHHHHHH
Confidence            4689999999999999999996

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.19  E-value=1  Score=27.63  Aligned_cols=22  Identities=14%  Similarity=0.315  Sum_probs=20.2

Q ss_pred             CCcccccceeeeCCHHHHHHHh
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHI  155 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~  155 (267)
                      ..+.|.+|+..|.....|..|+
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~   32 (44)
T 2eou_A           11 TTSECQECGKIFRHSSLLIEHQ   32 (44)
T ss_dssp             CCCCCTTTCCCCSSHHHHHHHH
T ss_pred             cCeECCCCCcccCCHHHHHHHH
Confidence            4688999999999999999996

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.15  E-value=1.1  Score=27.67  Aligned_cols=22  Identities=18%  Similarity=0.460  Sum_probs=20.3

Q ss_pred             CCcccccceeeeCCHHHHHHHh
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHI  155 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~  155 (267)
                      ..+.|.+|+..|.....|..|+
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~   32 (46)
T 2enc_A           11 KPFKCEECGKGFYTNSQCYSHQ   32 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHH
T ss_pred             CCcCCCCCCCcCCChHHHHHHH
Confidence            4689999999999999999996

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.13  E-value=1  Score=28.00  Aligned_cols=23  Identities=17%  Similarity=0.528  Sum_probs=20.6

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      +.+.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytm_A           11 KPYKCMECGKAFGDNSSCTQHQR   33 (46)
T ss_dssp             CSSSBTTTTBCCSSHHHHHHHHH
T ss_pred             CCcCCCCCCchhCCHHHHHHHHH
Confidence            46889999999999999999973

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.11  E-value=1.1  Score=27.66  Aligned_cols=22  Identities=18%  Similarity=0.474  Sum_probs=20.4

Q ss_pred             CCcccccceeeeCCHHHHHHHh
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHI  155 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~  155 (267)
                      ..+.|.+|+..|.....|..|+
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~   32 (46)
T 2ytk_A           11 KPYKCNECGKVFTQNSHLTNHW   32 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHH
T ss_pred             CCEeCCcCCCccCCHHHHHHHH
Confidence            5689999999999999999996

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.07  E-value=1  Score=27.76  Aligned_cols=23  Identities=17%  Similarity=0.596  Sum_probs=20.6

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      ..+.|.+|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eoq_A           11 KPFKCDICGKSFCGRSRLNRHSM   33 (46)
T ss_dssp             CSCCCSSSCCCCSSHHHHHHHHH
T ss_pred             CCcCCCcCCchhCCHHHHHHHHH
Confidence            46889999999999999999963

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=80.01  E-value=1.2  Score=28.01  Aligned_cols=24  Identities=17%  Similarity=0.294  Sum_probs=21.3

Q ss_pred             CCCcccccceeeeCCHHHHHHHhC
Q 024438          133 IQPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       133 ~~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      ...+.|.+|+..|.....|..|+.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~   33 (48)
T 2epr_A           10 RKQVACEICGKIFRDVYHLNRHKL   33 (48)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHGG
T ss_pred             CcCeeCCCCCcccCCHHHHHHHHH
Confidence            356899999999999999999963

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	267
d1zr9a1	67	g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593	8e-04
d1zu1a2	55	g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF	0.004

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]} Length = 67

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (80), Expect = 8e-04
 Identities = 6/29 (20%), Positives = 10/29 (34%)

Query: 138 CVVCNIDCNSKDVFQKHISGKKHLRNLQN 166
           C+ C          + H   K H + L+ 
Sbjct: 18  CLACARYFIDSTNLKTHFRSKDHKKRLKQ 46

>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 55

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 33.0 bits (75), Expect = 0.004
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 138 CVVCNIDCNSKDVFQKHISGKKHLRNLQNQ 167
           C VCN+  +S  V + H  GK H++NL+ +
Sbjct: 24  CPVCNMTFSSPVVAESHYIGKTHIKNLRLR 53

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	267
d1zu1a2	55	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	98.9
d1zu1a2	55	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	98.8
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	98.56
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	97.98
d1zu1a1	72	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	97.96
d1zu1a1	72	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	97.69
d2vrda1	61	Spliceosomal protein U1C {Human (Homo sapiens) [Ta	97.25
d2vrda1	61	Spliceosomal protein U1C {Human (Homo sapiens) [Ta	96.69
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	96.31
d1fu9a_	36	U-shaped transcription factor, different fingers {	94.61
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	94.35
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	94.24
d1fu9a_	36	U-shaped transcription factor, different fingers {	93.21
d2yrka1	48	Zinc finger homeobox protein 4, ZFHX4 {Human (Homo	92.75
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	92.72
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	92.16
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	92.11
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	91.22
d2yrka1	48	Zinc finger homeobox protein 4, ZFHX4 {Human (Homo	91.21
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	90.83
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	90.61
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	90.48
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	90.01
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	89.72
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	89.29
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	88.86
d1y0jb1	36	U-shaped transcription factor, different fingers {	88.79
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	88.74
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	88.7
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	87.79
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	87.35
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	87.27
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	86.85
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	85.96
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	84.95
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	84.52
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	83.99
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	83.77
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	82.83
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	82.49
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	82.12
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	82.12
d1y0jb1	36	U-shaped transcription factor, different fingers {	81.7
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	81.1

>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=98.90  E-value=7.4e-10  Score=76.88  Aligned_cols=36  Identities=33%  Similarity=0.555  Sum_probs=32.7

Q ss_pred             CCCcccccceeeeCCHHHHHHHhCCchhHHHHHhhc
Q 024438          133 IQPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQH  168 (267)
Q Consensus       133 ~~~~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~  168 (267)
                      ....||.||+++|+|+.++++||.||+|+++|+..+
T Consensus        19 d~nk~C~lCn~~Fns~~~AqsHY~GK~H~K~lk~~~   54 (55)
T d1zu1a2          19 DRSKCCPVCNMTFSSPVVAESHYIGKTHIKNLRLRE   54 (55)
T ss_dssp             CTTTEETTTTEECSSHHHHHHHHTSHHHHHHHHHHH
T ss_pred             CchhhhhhhhcccCCHHHHHHHhhhhHHHHHHHHhc
Confidence            456699999999999999999999999999998753

>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=98.80  E-value=2e-09  Score=74.71  Aligned_cols=35  Identities=26%  Similarity=0.503  Sum_probs=32.3

Q ss_pred             ccccccccceeeeCCHHHHHHhhcchhHHHHHHHH
Q 024438          207 DSVRVCTVCNIACNGQEAFNDHLSGKKHAAQVITL  241 (267)
Q Consensus       207 ~~~~~C~lCnVscnSe~~~~sHL~GKKHkkkvkkl  241 (267)
                      +...||.|||++|||+.+.++|+.||+|+++++..
T Consensus        19 d~nk~C~lCn~~Fns~~~AqsHY~GK~H~K~lk~~   53 (55)
T d1zu1a2          19 DRSKCCPVCNMTFSSPVVAESHYIGKTHIKNLRLR   53 (55)
T ss_dssp             CTTTEETTTTEECSSHHHHHHHHTSHHHHHHHHHH
T ss_pred             CchhhhhhhhcccCCHHHHHHHhhhhHHHHHHHHh
Confidence            45679999999999999999999999999999865

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=2.2e-08  Score=72.17  Aligned_cols=45  Identities=16%  Similarity=0.325  Sum_probs=38.8

Q ss_pred             cccccccceeeeCCHHHHHHhhcchhHHHHHHHHhhhcCCCCCCCc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLSGKKHAAQVITLLSSLAFSLIDSH  253 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~GKKHkkkvkkl~~~~~~s~~~~~  253 (267)
                      ..|||..|++.|.|+.+|++|+++|+|+++|++|.++ .+++++.+
T Consensus        14 gqfYCv~C~K~F~se~~l~~H~ksKkHKrrvk~L~~~-p~t~~eae   58 (67)
T d1zr9a1          14 GLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSVE-PYSQEEAE   58 (67)
T ss_dssp             GCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHTSC-SSCTTTSS
T ss_pred             CEEecccccCccCCHHHHHHHHcccHHHHHHHHhccC-cCCHHHHH
Confidence            4699999999999999999999999999999999653 44666543

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=1.7e-06  Score=62.04  Aligned_cols=37  Identities=19%  Similarity=0.332  Sum_probs=34.5

Q ss_pred             CCcccccceeeeCCHHHHHHHhCCchhHHHHHhhcCC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNP  170 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~~~  170 (267)
                      ..|||-+|+..|.++.+|+.|..+|+|+++++++...
T Consensus        14 gqfYCv~C~K~F~se~~l~~H~ksKkHKrrvk~L~~~   50 (67)
T d1zr9a1          14 GLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSVE   50 (67)
T ss_dssp             GCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHTSC
T ss_pred             CEEecccccCccCCHHHHHHHHcccHHHHHHHHhccC
Confidence            5699999999999999999999999999999998654

>d1zu1a1 g.37.1.4 (A:2-73) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=97.96  E-value=1.9e-06  Score=61.92  Aligned_cols=39  Identities=21%  Similarity=0.368  Sum_probs=35.8

Q ss_pred             CCCCCCCcccccceeeeCCHHHHHHHhCCchhHHHHHhh
Q 024438          129 QSKVIQPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQ  167 (267)
Q Consensus       129 ~pK~~~~~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l  167 (267)
                      ......+.+|+||++.+.|+++..+||.||||.++++..
T Consensus        26 ~~~lFtd~~CkvC~a~L~seSQriaHYeskkHa~kvr~y   64 (72)
T d1zu1a1          26 NSHIFSDTQCKVCSAVLISESQKLAHYQSRKHANKVRRY   64 (72)
T ss_dssp             TTTTBCSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHH
T ss_pred             hhhhcchhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356778899999999999999999999999999999984

>d1zu1a1 g.37.1.4 (A:2-73) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=97.69  E-value=9.6e-06  Score=58.17  Aligned_cols=35  Identities=26%  Similarity=0.394  Sum_probs=32.1

Q ss_pred             cccccccceeeeCCHHHHHHhhcchhHHHHHHHHh
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLSGKKHAAQVITLL  242 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~GKKHkkkvkkl~  242 (267)
                      ...+|.+|++...|+.+-.+|+.|+||.++|+..-
T Consensus        31 td~~CkvC~a~L~seSQriaHYeskkHa~kvr~yf   65 (72)
T d1zu1a1          31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYM   65 (72)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHH
T ss_pred             chhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35789999999999999999999999999999753

>d2vrda1 g.37.1.4 (A:1-61) Spliceosomal protein U1C {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Spliceosomal protein U1C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=8.7e-05  Score=52.01  Aligned_cols=35  Identities=23%  Similarity=0.376  Sum_probs=30.2

Q ss_pred             ccccccceeeeC--CHHHHHHhhcchhHHHHHHHHhh
Q 024438          209 VRVCTVCNIACN--GQEAFNDHLSGKKHAAQVITLLS  243 (267)
Q Consensus       209 ~~~C~lCnVscn--Se~~~~sHL~GKKHkkkvkkl~~  243 (267)
                      .|||+-|++.++  |+..-+.|+.|+||+++++..-.
T Consensus         3 ryyCdYC~~~lt~ds~s~RK~H~~G~kH~~n~~~yy~   39 (61)
T d2vrda1           3 KFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQ   39 (61)
T ss_dssp             SCEETTTTEECSCCSHHHHHHHTCCTHHHHHHHHHTS
T ss_pred             chhhhhhcchhccCChhHHHHHhccHHHHHHHHHHHH
Confidence            699999999994  56778999999999999985543

>d2vrda1 g.37.1.4 (A:1-61) Spliceosomal protein U1C {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Spliceosomal protein U1C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.00058  Score=47.69  Aligned_cols=36  Identities=28%  Similarity=0.447  Sum_probs=30.8

Q ss_pred             CCcccccceeeeC--CHHHHHHHhCCchhHHHHHhhcC
Q 024438          134 QPVRCVVCNIDCN--SKDVFQKHISGKKHLRNLQNQHN  169 (267)
Q Consensus       134 ~~~~C~LCnVsct--S~~~l~sH~~GKKHqknlk~l~~  169 (267)
                      ..+||+-|++.++  ++..-+.|..|++|+.|++..-.
T Consensus         2 pryyCdYC~~~lt~ds~s~RK~H~~G~kH~~n~~~yy~   39 (61)
T d2vrda1           2 PKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQ   39 (61)
T ss_dssp             CSCEETTTTEECSCCSHHHHHHHTCCTHHHHHHHHHTS
T ss_pred             CchhhhhhcchhccCChhHHHHHhccHHHHHHHHHHHH
Confidence            3689999999995  57778999999999999998543

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.31  E-value=0.0012  Score=43.65  Aligned_cols=50  Identities=20%  Similarity=0.363  Sum_probs=41.6

Q ss_pred             CCcccccceeeeCCHHHHHHHhCCchhHHHHHhhcCCCccccccccccCCCCCCChhHHHHHHHhhhcCCCccccccccc
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCNTINKVSLPSQELEMKRQKLLNGGAAVDSVRVCT  213 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~~~~~~~~k~s~Nt~G~~~aP~ed~evkkqklle~~~~~~~~~~C~  213 (267)
                      +.|.|+ |+..|+....|..|.  +.|..                                            ...|.|.
T Consensus         2 K~y~C~-Cgk~F~~~~~l~~H~--~~Ht~--------------------------------------------ekpy~C~   34 (53)
T d2csha1           2 KLYPCQ-CGKSFTHKSQRDRHM--SMHLG--------------------------------------------LRPYGCG   34 (53)
T ss_dssp             CCEECT-TSCEESSHHHHHHHH--HHHSC--------------------------------------------CCSEECT
T ss_pred             cCCCCC-CCCeECCHHHhHHHh--hcccc--------------------------------------------ccCCcCC
Confidence            468897 999999999999986  34531                                            1258999


Q ss_pred             cceeeeCCHHHHHHhhc
Q 024438          214 VCNIACNGQEAFNDHLS  230 (267)
Q Consensus       214 lCnVscnSe~~~~sHL~  230 (267)
                      +|+..|+....|..|++
T Consensus        35 ~C~k~F~~~~~L~~H~r   51 (53)
T d2csha1          35 VCGKKFKMKHHLVGHMK   51 (53)
T ss_dssp             TTSCEESSSHHHHHHHT
T ss_pred             CcCCEecCHHHHHHHHh
Confidence            99999999999999985

>d1fu9a_ g.37.1.2 (A:) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.61  E-value=0.0096  Score=36.91  Aligned_cols=21  Identities=24%  Similarity=0.594  Sum_probs=19.4

Q ss_pred             cccccccceeeeCCHHHHHHh
Q 024438          208 SVRVCTVCNIACNGQEAFNDH  228 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sH  228 (267)
                      ...+|..|++.||+...|..|
T Consensus         7 ~~rYC~~CDI~Fn~~~T~~aH   27 (36)
T d1fu9a_           7 MKKYCSTCDISFNYVKTYLAH   27 (36)
T ss_dssp             CCSEETTTTEECSSHHHHHHH
T ss_pred             hhhHHhhCCceehhHHHHHHH
Confidence            358999999999999999998

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.35  E-value=0.013  Score=36.07  Aligned_cols=24  Identities=25%  Similarity=0.427  Sum_probs=21.7

Q ss_pred             ccccccccceeeeCCHHHHHHhhc
Q 024438          207 DSVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       207 ~~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..+|.|++|+..|+....|..|++
T Consensus         5 ekPy~C~~C~k~F~~~~~L~~H~r   28 (35)
T d1srka_           5 KRPFVCRICLSAFTTKANCARHLK   28 (35)
T ss_dssp             CSCEECSSSCCEESSHHHHHHHHG
T ss_pred             CccccCCCCCCcccChHHHHHHcc
Confidence            347999999999999999999985

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.24  E-value=0.0025  Score=37.56  Aligned_cols=27  Identities=26%  Similarity=0.588  Sum_probs=25.1

Q ss_pred             cccccceeeeCCHHHHHHhhcchhHHH
Q 024438          210 RVCTVCNIACNGQEAFNDHLSGKKHAA  236 (267)
Q Consensus       210 ~~C~lCnVscnSe~~~~sHL~GKKHkk  236 (267)
                      |.|.-||-+|.....|..||++|-|.+
T Consensus         2 y~C~~CnF~FKTKGNLTKHmkSKaH~k   28 (29)
T d1bboa2           2 YHCTYCNFSFKTKGNLTKHMKSKAHSK   28 (29)
T ss_dssp             EECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             cccceeeeeEeeccchhHhhhhhhhcc
Confidence            789999999999999999999998864

>d1fu9a_ g.37.1.2 (A:) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.21  E-value=0.023  Score=35.13  Aligned_cols=22  Identities=23%  Similarity=0.463  Sum_probs=19.8

Q ss_pred             CCcccccceeeeCCHHHHHHHh
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHI  155 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~  155 (267)
                      ...||..|+|+|++...|..|.
T Consensus         7 ~~rYC~~CDI~Fn~~~T~~aHK   28 (36)
T d1fu9a_           7 MKKYCSTCDISFNYVKTYLAHK   28 (36)
T ss_dssp             CCSEETTTTEECSSHHHHHHHH
T ss_pred             hhhHHhhCCceehhHHHHHHHH
Confidence            4579999999999999999984

>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger homeobox protein 4, ZFHX4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.75  E-value=0.015  Score=38.22  Aligned_cols=34  Identities=18%  Similarity=0.529  Sum_probs=30.9

Q ss_pred             cccccceeeeCCHHHHHHHhCCchhHHHHHhhcC
Q 024438          136 VRCVVCNIDCNSKDVFQKHISGKKHLRNLQNQHN  169 (267)
Q Consensus       136 ~~C~LCnVsctS~~~l~sH~~GKKHqknlk~l~~  169 (267)
                      --|.+|++..++....+.|...++|..+++...+
T Consensus         7 ~eC~lC~vKYs~~~SvrdHiFskqHI~~Vk~~v~   40 (48)
T d2yrka1           7 PECTLCGVKYSARLSIRDHIFSKQHISKVRETVG   40 (48)
T ss_dssp             SCCTTTTCCCCSSSCHHHHHTSHHHHHHHHHTTC
T ss_pred             ccCcccceeeeeecchHhhhhhHHHHHHHHHHHH
Confidence            3599999999999999999999999999998544

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.72  E-value=0.015  Score=34.13  Aligned_cols=28  Identities=32%  Similarity=0.720  Sum_probs=25.8

Q ss_pred             CcccccceeeeCCHHHHHHHhCCchhHH
Q 024438          135 PVRCVVCNIDCNSKDVFQKHISGKKHLR  162 (267)
Q Consensus       135 ~~~C~LCnVsctS~~~l~sH~~GKKHqk  162 (267)
                      ++.|.-|+.+|-..-.+..|+.+|-|.+
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSKaH~k   28 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSKAHSK   28 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CcccceeeeeEeeccchhHhhhhhhhcc
Confidence            3679999999999999999999999975

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=92.16  E-value=0.032  Score=32.80  Aligned_cols=22  Identities=36%  Similarity=0.572  Sum_probs=20.4

Q ss_pred             ccccccceeeeCCHHHHHHhhc
Q 024438          209 VRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       209 ~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      .|.|.+|+..|+....|..|++
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~r   23 (29)
T d2adra1           2 SFVCEVCTRAFARQEHLKRHYR   23 (29)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHH
T ss_pred             cCCCCCCCCCCCCchHcccccC
Confidence            5889999999999999999985

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.11  E-value=0.036  Score=32.44  Aligned_cols=22  Identities=14%  Similarity=0.407  Sum_probs=20.4

Q ss_pred             ccccccceeeeCCHHHHHHhhc
Q 024438          209 VRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       209 ~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      .|.|.+|+..|+....|..|++
T Consensus         3 Py~C~~C~k~F~~~~~L~~H~r   24 (28)
T d1a1ia2           3 PFQCRICMRNFSRSDHLTTHIR   24 (28)
T ss_dssp             CEECTTTCCEESCHHHHHHHHH
T ss_pred             CccCCCCcCEecccccccccCC
Confidence            6899999999999999999975

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.22  E-value=0.062  Score=33.04  Aligned_cols=24  Identities=13%  Similarity=0.192  Sum_probs=21.6

Q ss_pred             ccccccccceeeeCCHHHHHHhhc
Q 024438          207 DSVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       207 ~~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ...|.|..|+..|+....|..|++
T Consensus         9 eKPy~C~~C~k~F~~~~~L~~H~r   32 (37)
T d1p7aa_           9 IKPFQCPDCDRSFSRSDHLALHRK   32 (37)
T ss_dssp             SSSBCCTTTCCCBSSHHHHHHHHG
T ss_pred             ccCeEeCCCCCEecCHHHHHHHHh
Confidence            347999999999999999999974

>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger homeobox protein 4, ZFHX4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.21  E-value=0.035  Score=36.46  Aligned_cols=33  Identities=24%  Similarity=0.517  Sum_probs=30.5

Q ss_pred             ccccccceeeeCCHHHHHHhhcchhHHHHHHHH
Q 024438          209 VRVCTVCNIACNGQEAFNDHLSGKKHAAQVITL  241 (267)
Q Consensus       209 ~~~C~lCnVscnSe~~~~sHL~GKKHkkkvkkl  241 (267)
                      .--|.+|++..++....+.|+=.+.|..+||..
T Consensus         6 ~~eC~lC~vKYs~~~SvrdHiFskqHI~~Vk~~   38 (48)
T d2yrka1           6 KPECTLCGVKYSARLSIRDHIFSKQHISKVRET   38 (48)
T ss_dssp             CSCCTTTTCCCCSSSCHHHHHTSHHHHHHHHHT
T ss_pred             cccCcccceeeeeecchHhhhhhHHHHHHHHHH
Confidence            457999999999999999999999999999964

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.83  E-value=0.062  Score=32.96  Aligned_cols=23  Identities=13%  Similarity=0.340  Sum_probs=21.1

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|+....|..|++
T Consensus         7 kP~~C~~C~k~F~~~~~L~~H~~   29 (36)
T d2ct1a2           7 KPYECYICHARFTQSGTMKMHIL   29 (36)
T ss_dssp             CSEECTTTCCEESCHHHHHHHHH
T ss_pred             CCEeCCCCcccccchHHHHHHcc
Confidence            47999999999999999999975

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.61  E-value=0.067  Score=32.75  Aligned_cols=26  Identities=27%  Similarity=0.575  Sum_probs=23.1

Q ss_pred             CCcccccceeeeCCHHHHHHHhCCchhH
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHISGKKHL  161 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~GKKHq  161 (267)
                      ++|.|.+|+..|+....|..|+  +.|.
T Consensus         6 kPy~C~~C~k~F~~~~~L~~H~--r~Ht   31 (35)
T d1srka_           6 RPFVCRICLSAFTTKANCARHL--KVHT   31 (35)
T ss_dssp             SCEECSSSCCEESSHHHHHHHH--GGGT
T ss_pred             ccccCCCCCCcccChHHHHHHc--cccC
Confidence            6799999999999999999998  4564

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.48  E-value=0.068  Score=33.44  Aligned_cols=23  Identities=17%  Similarity=0.522  Sum_probs=20.9

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|+.|+..|+....|..|++
T Consensus         4 Kpy~C~~Cgk~F~~~~~L~~H~r   26 (39)
T d2epsa1           4 KPYICQSCGKGFSRPDHLNGHIK   26 (39)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCccCCCCCCCcCChHHhhccCc
Confidence            47999999999999999999975

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.01  E-value=0.048  Score=32.06  Aligned_cols=22  Identities=14%  Similarity=0.353  Sum_probs=20.4

Q ss_pred             ccccccceeeeCCHHHHHHhhc
Q 024438          209 VRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       209 ~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      .|-|.+|+..|+....|..|++
T Consensus         2 py~C~~C~k~F~~~s~L~~H~r   23 (29)
T d1sp1a_           2 KFACPECPKRFMRSDHLSKHIK   23 (29)
T ss_dssp             CSCCTTTTCCCSCSHHHHHHHH
T ss_pred             CEECCcCCCeecchHHhhhhcC
Confidence            5889999999999999999976

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.72  E-value=0.085  Score=32.23  Aligned_cols=23  Identities=13%  Similarity=0.430  Sum_probs=21.0

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|++|+..|.....|..|++
T Consensus         7 kPy~C~~C~k~F~~~~~L~~H~r   29 (36)
T d1x6ha2           7 KPYACSHCDKTFRQKQLLDMHFK   29 (36)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHH
T ss_pred             CCEECCCCCCCcCCHhHHHHhCc
Confidence            47999999999999999999974

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.29  E-value=0.093  Score=29.81  Aligned_cols=21  Identities=19%  Similarity=0.567  Sum_probs=19.5

Q ss_pred             ccccceeeeCCHHHHHHhhcc
Q 024438          211 VCTVCNIACNGQEAFNDHLSG  231 (267)
Q Consensus       211 ~C~lCnVscnSe~~~~sHL~G  231 (267)
                      .|++|+.-|...+.+..|+++
T Consensus         3 kc~~c~kcfsrkdklk~hmr~   23 (26)
T d2dmda2           3 KCEVCGKCFSRKDKLKTHMRC   23 (26)
T ss_dssp             CBTTTTBCCCCHHHHHHHGGG
T ss_pred             ccchhhhHhcchhHHHHHhhc
Confidence            599999999999999999985

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.86  E-value=0.11  Score=31.32  Aligned_cols=23  Identities=17%  Similarity=0.271  Sum_probs=20.8

Q ss_pred             cccccccceeeeCCHHHHHHhhc
Q 024438          208 SVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ..|.|+.|+..|+....|..|++
T Consensus         6 kpy~C~~Cgk~F~~~~~L~~H~r   28 (33)
T d1x6ea1           6 KPYGCVECGKAFSRSSILVQHQR   28 (33)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCeeCCCCCCEeCchHHhHhhcc
Confidence            47999999999999999999964

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=88.79  E-value=0.12  Score=31.33  Aligned_cols=22  Identities=23%  Similarity=0.490  Sum_probs=20.4

Q ss_pred             cccccccceeeeCCHHHHHHhh
Q 024438          208 SVRVCTVCNIACNGQEAFNDHL  229 (267)
Q Consensus       208 ~~~~C~lCnVscnSe~~~~sHL  229 (267)
                      .+|.|..|++.|.|...++.|.
T Consensus         7 arf~c~pcgirfss~stleahq   28 (36)
T d1y0jb1           7 ARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CCCBCTTTCCBCSCHHHHHHHT
T ss_pred             cceeccccceeecChhHHHhhh
Confidence            4799999999999999999995

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=88.74  E-value=0.13  Score=30.07  Aligned_cols=23  Identities=17%  Similarity=0.501  Sum_probs=20.6

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      +++-|.+|+..|+....|..|+.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r   23 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYR   23 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHH
T ss_pred             CcCCCCCCCCCCCCchHcccccC
Confidence            36789999999999999999974

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.70  E-value=0.14  Score=31.48  Aligned_cols=24  Identities=13%  Similarity=0.283  Sum_probs=21.7

Q ss_pred             ccccccccceeeeCCHHHHHHhhc
Q 024438          207 DSVRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       207 ~~~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      ...|.|+.|+..|+....|..|.+
T Consensus        10 ekpy~C~~CgK~F~~~s~L~~H~r   33 (38)
T d2cota2          10 RRRYKCDECGKSFSHSSDLSKHRR   33 (38)
T ss_dssp             SCSSBCSSSCCBCSCHHHHHHHHT
T ss_pred             CCCEecCCCCceeeCHHHHHHhCc
Confidence            447999999999999999999976

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.79  E-value=0.15  Score=31.07  Aligned_cols=23  Identities=22%  Similarity=0.626  Sum_probs=21.2

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      ++|.|++|+..|+....|..|+.
T Consensus         7 kP~~C~~C~k~F~~~~~L~~H~~   29 (36)
T d2ct1a2           7 KPYECYICHARFTQSGTMKMHIL   29 (36)
T ss_dssp             CSEECTTTCCEESCHHHHHHHHH
T ss_pred             CCEeCCCCcccccchHHHHHHcc
Confidence            67999999999999999999964

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.35  E-value=0.13  Score=29.90  Aligned_cols=22  Identities=18%  Similarity=0.552  Sum_probs=20.2

Q ss_pred             cccccceeeeCCHHHHHHhhcc
Q 024438          210 RVCTVCNIACNGQEAFNDHLSG  231 (267)
Q Consensus       210 ~~C~lCnVscnSe~~~~sHL~G  231 (267)
                      |.|+-|++.|.-+++|+.|++.
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRs   23 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRT   23 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHH
T ss_pred             ccccccCcccCCHHHHHHHHHH
Confidence            7899999999999999999864

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.27  E-value=0.18  Score=29.27  Aligned_cols=23  Identities=26%  Similarity=0.681  Sum_probs=20.6

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      +++-|.+|+..|+....|..|+.
T Consensus         2 KPy~C~~C~k~F~~~~~L~~H~r   24 (28)
T d1a1ia2           2 KPFQCRICMRNFSRSDHLTTHIR   24 (28)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHH
T ss_pred             cCccCCCCcCEecccccccccCC
Confidence            46889999999999999999973

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.85  E-value=0.17  Score=30.91  Aligned_cols=22  Identities=23%  Similarity=0.535  Sum_probs=20.9

Q ss_pred             CCcccccceeeeCCHHHHHHHh
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHI  155 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~  155 (267)
                      +++-|.+|+.+|+....|..|+
T Consensus        10 KPy~C~~C~k~F~~~~~L~~H~   31 (37)
T d1p7aa_          10 KPFQCPDCDRSFSRSDHLALHR   31 (37)
T ss_dssp             SSBCCTTTCCCBSSHHHHHHHH
T ss_pred             cCeEeCCCCCEecCHHHHHHHH
Confidence            6789999999999999999997

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.96  E-value=0.18  Score=28.96  Aligned_cols=22  Identities=18%  Similarity=0.324  Sum_probs=19.8

Q ss_pred             ccccccceeeeCCHHHHHHhhc
Q 024438          209 VRVCTVCNIACNGQEAFNDHLS  230 (267)
Q Consensus       209 ~~~C~lCnVscnSe~~~~sHL~  230 (267)
                      .|-|+.|+..|+....|..|.+
T Consensus         2 Py~C~eCgK~F~~~s~L~~Hqr   23 (26)
T d1x6ea2           2 PYKCLECGKAFSQNSGLINHQR   23 (26)
T ss_dssp             CEECSSSCCEESSHHHHHHHHH
T ss_pred             CccCCCCcCeeccCcccccCcc
Confidence            5889999999999999999864

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.95  E-value=0.21  Score=29.36  Aligned_cols=22  Identities=18%  Similarity=0.291  Sum_probs=20.1

Q ss_pred             cccccc--ceeeeCCHHHHHHhhc
Q 024438          209 VRVCTV--CNIACNGQEAFNDHLS  230 (267)
Q Consensus       209 ~~~C~l--CnVscnSe~~~~sHL~  230 (267)
                      .|.|+.  |+..|+....|..|++
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r   25 (30)
T d1ubdc3           2 PFQCTFEGCGKRFSLDFNLRTHVR   25 (30)
T ss_dssp             CEECCSTTCCCEESCHHHHHHHHH
T ss_pred             CccCCCCCCCceECcHHHcCcccc
Confidence            588988  9999999999999985

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.52  E-value=0.23  Score=29.70  Aligned_cols=22  Identities=18%  Similarity=0.283  Sum_probs=20.4

Q ss_pred             cccccc--ceeeeCCHHHHHHhhc
Q 024438          209 VRVCTV--CNIACNGQEAFNDHLS  230 (267)
Q Consensus       209 ~~~C~l--CnVscnSe~~~~sHL~  230 (267)
                      .|.|+.  |+..|+....|..|++
T Consensus         3 P~~C~~pgC~k~F~r~~~L~~H~r   26 (32)
T d1zfda_           3 PYSCDHPGCDKAFVRNHDLIRHKK   26 (32)
T ss_dssp             SBCCCCTTCCCCBSSSHHHHHHHG
T ss_pred             CeECcCCCCCCeeCCHHHHHHHhh
Confidence            689999  9999999999999975

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.99  E-value=0.2  Score=29.24  Aligned_cols=23  Identities=26%  Similarity=0.457  Sum_probs=20.6

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      +.|-|.+|+.+|+....|..|..
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r   23 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIK   23 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHH
T ss_pred             CCEECCcCCCeecchHHhhhhcC
Confidence            36889999999999999999974

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.77  E-value=0.24  Score=29.14  Aligned_cols=22  Identities=27%  Similarity=0.542  Sum_probs=20.2

Q ss_pred             cccccc--ceeeeCCHHHHHHhhc
Q 024438          209 VRVCTV--CNIACNGQEAFNDHLS  230 (267)
Q Consensus       209 ~~~C~l--CnVscnSe~~~~sHL~  230 (267)
                      .|.|+.  |+..|+....|+.|++
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r   25 (30)
T d2glia3           2 PHKCTFEGCRKSYSRLENLKTHLR   25 (30)
T ss_dssp             CCCCCSTTCCCCCSSHHHHHHHHH
T ss_pred             CeeCCCCCCCceECChhHhhhhcC
Confidence            588999  9999999999999974

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.83  E-value=0.33  Score=27.43  Aligned_cols=22  Identities=27%  Similarity=0.551  Sum_probs=19.8

Q ss_pred             cccccceeeeCCHHHHHHHhCC
Q 024438          136 VRCVVCNIDCNSKDVFQKHISG  157 (267)
Q Consensus       136 ~~C~LCnVsctS~~~l~sH~~G  157 (267)
                      ..|++|+..|+..+.+..|+..
T Consensus         2 hkc~~c~kcfsrkdklk~hmr~   23 (26)
T d2dmda2           2 HKCEVCGKCFSRKDKLKTHMRC   23 (26)
T ss_dssp             CCBTTTTBCCCCHHHHHHHGGG
T ss_pred             CccchhhhHhcchhHHHHHhhc
Confidence            4699999999999999999864

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.49  E-value=0.37  Score=29.17  Aligned_cols=22  Identities=23%  Similarity=0.631  Sum_probs=20.7

Q ss_pred             CCcccccceeeeCCHHHHHHHh
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHI  155 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~  155 (267)
                      +++-|.+|+.+|+....|..|+
T Consensus         7 kPy~C~~C~k~F~~~~~L~~H~   28 (36)
T d1x6ha2           7 KPYACSHCDKTFRQKQLLDMHF   28 (36)
T ss_dssp             CCEECSSSSCEESSHHHHHHHH
T ss_pred             CCEECCCCCCCcCCHhHHHHhC
Confidence            5789999999999999999997

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.12  E-value=0.41  Score=28.66  Aligned_cols=23  Identities=22%  Similarity=0.566  Sum_probs=20.9

Q ss_pred             CCcccccceeeeCCHHHHHHHhC
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      +.+-|..|+.+|+....|..|..
T Consensus         6 kpy~C~~Cgk~F~~~~~L~~H~r   28 (33)
T d1x6ea1           6 KPYGCVECGKAFSRSSILVQHQR   28 (33)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCeeCCCCCCEeCchHHhHhhcc
Confidence            67899999999999999999963

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.12  E-value=0.44  Score=29.50  Aligned_cols=23  Identities=26%  Similarity=0.488  Sum_probs=20.9

Q ss_pred             CCCcccccceeeeCCHHHHHHHh
Q 024438          133 IQPVRCVVCNIDCNSKDVFQKHI  155 (267)
Q Consensus       133 ~~~~~C~LCnVsctS~~~l~sH~  155 (267)
                      .+.+.|+.|+..|+....|..|+
T Consensus         3 ~Kpy~C~~Cgk~F~~~~~L~~H~   25 (39)
T d2epsa1           3 GKPYICQSCGKGFSRPDHLNGHI   25 (39)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHH
T ss_pred             CCCccCCCCCCCcCChHHhhccC
Confidence            36789999999999999999986

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=81.70  E-value=0.45  Score=28.67  Aligned_cols=22  Identities=23%  Similarity=0.516  Sum_probs=20.1

Q ss_pred             CCcccccceeeeCCHHHHHHHh
Q 024438          134 QPVRCVVCNIDCNSKDVFQKHI  155 (267)
Q Consensus       134 ~~~~C~LCnVsctS~~~l~sH~  155 (267)
                      ..|.|.-|.|.|+|...++.|.
T Consensus         7 arf~c~pcgirfss~stleahq   28 (36)
T d1y0jb1           7 ARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CCCBCTTTCCBCSCHHHHHHHT
T ss_pred             cceeccccceeecChhHHHhhh
Confidence            4688999999999999999995

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.10  E-value=0.49  Score=28.82  Aligned_cols=24  Identities=17%  Similarity=0.324  Sum_probs=21.8

Q ss_pred             CCCcccccceeeeCCHHHHHHHhC
Q 024438          133 IQPVRCVVCNIDCNSKDVFQKHIS  156 (267)
Q Consensus       133 ~~~~~C~LCnVsctS~~~l~sH~~  156 (267)
                      .+.+-|+.|+.+|.....|..|..
T Consensus        10 ekpy~C~~CgK~F~~~s~L~~H~r   33 (38)
T d2cota2          10 RRRYKCDECGKSFSHSSDLSKHRR   33 (38)
T ss_dssp             SCSSBCSSSCCBCSCHHHHHHHHT
T ss_pred             CCCEecCCCCceeeCHHHHHHhCc
Confidence            467999999999999999999975