Citrus Sinensis ID: 024444

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------
MSKEVNEEGQTHRHHHGKDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHVRKKLCISEFCVCLLCFYDILNK
ccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHEccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccHHHHHccccccccccEEEEEcHHHHHHHHHHHHHHHHc
ccccccccccccccccccccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccccccEEEEHcHHHHHHHHHHHHHHHcc
mskevneegqthrhhhgkdyvdpppaplidmAELKLWSFYRALIAEFVATLLFLYVSVATVighkkqsdacggvGLLGIAWAFGGMIFVLVYCTagisgghinpaVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHeynslgggantvasgynkgsalgAEIIGTFVLVYTVFsatdpkrsardshvpvlaplpiGFAVFMVHLAtipitgtginparsfgAAVIYNNDKAWDDHVRKKLCISEFCVCLLCFYDILNK
mskevneegqthrhhhgkdyvdppPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHVRKKLCISEFCVCLLCFYDILNK
MSKEVNEEGQTHRHHHGKDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHVRKKLCISEFCVCLLCFYDILNK
**************************PLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATD*******SHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHVRKKLCISEFCVCLLCFYDIL**
**********************PPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHVRKKLCISEFCVCLLCFYDILNK
*****************KDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHVRKKLCISEFCVCLLCFYDILNK
******************DYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHVRKKLCISEFCVCLLCFYDILNK
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiRRRRRRRRRRRRRRRRRiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooRRRRRRRRRRRRRRRRRRooooooooooHHHHHHHHHHHHHHHHiiii
ooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MSKEVNEEGQTHRHHHGKDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHVRKKLCISEFCVCLLCFYDILNK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query267 2.2.26 [Sep-21-2011]
P93004280 Aquaporin PIP2-7 OS=Arabi yes no 0.902 0.860 0.885 1e-124
Q9ZVX8278 Probable aquaporin PIP2-8 no no 0.895 0.859 0.893 1e-123
P42767282 Aquaporin PIP-type OS=Atr N/A no 0.906 0.858 0.836 1e-118
Q7XLR1282 Probable aquaporin PIP2-6 yes no 0.902 0.854 0.821 1e-113
Q9XF58285 Aquaporin PIP2-5 OS=Zea m N/A no 0.898 0.842 0.765 1e-109
Q9ATM6288 Aquaporin PIP2-4 OS=Zea m N/A no 0.913 0.847 0.757 1e-109
Q6K215288 Probable aquaporin PIP2-2 no no 0.913 0.847 0.753 1e-108
Q9ATM4287 Aquaporin PIP2-7 OS=Zea m N/A no 0.910 0.846 0.756 1e-107
Q8H5N9290 Probable aquaporin PIP2-1 no no 0.902 0.831 0.779 1e-107
Q84RL7290 Aquaporin PIP2-1 OS=Zea m N/A no 0.906 0.834 0.776 1e-107
>sp|P93004|PIP27_ARATH Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7 PE=1 SV=2 Back     alignment and function desciption
 Score =  445 bits (1145), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 216/244 (88%), Positives = 230/244 (94%), Gaps = 3/244 (1%)

Query: 1   MSKEVNEEGQTHRHHHGKDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVAT 60
           MSKEV+EEG+TH   HGKDYVDPPPAPL+DM ELK WSFYRALIAEF+ATLLFLYV+VAT
Sbjct: 1   MSKEVSEEGKTH---HGKDYVDPPPAPLLDMGELKSWSFYRALIAEFIATLLFLYVTVAT 57

Query: 61  VIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIR 120
           VIGHKKQ+  C GVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSL+R
Sbjct: 58  VIGHKKQTGPCDGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVR 117

Query: 121 AVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYT 180
           A+ YM+AQCLGAICGVG VKAFMK  YN+LGGGANTVA GY+KG+ALGAEIIGTFVLVYT
Sbjct: 118 ALGYMIAQCLGAICGVGFVKAFMKTPYNTLGGGANTVADGYSKGTALGAEIIGTFVLVYT 177

Query: 181 VFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKA 240
           VFSATDPKRSARDSH+PVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNN+KA
Sbjct: 178 VFSATDPKRSARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKA 237

Query: 241 WDDH 244
           WDD 
Sbjct: 238 WDDQ 241
Water channel required to facilitate the transport of water across cell membrane. May be involved in the osmoregulation in plants under high osmotic stress such as under a high salt condition.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9ZVX8|PIP28_ARATH Probable aquaporin PIP2-8 OS=Arabidopsis thaliana GN=PIP2-8 PE=1 SV=1 Back     alignment and function description
>sp|P42767|PIP1_ATRCA Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1 Back     alignment and function description
>sp|Q7XLR1|PIP26_ORYSJ Probable aquaporin PIP2-6 OS=Oryza sativa subsp. japonica GN=PIP2-6 PE=2 SV=2 Back     alignment and function description
>sp|Q9XF58|PIP25_MAIZE Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1 Back     alignment and function description
>sp|Q9ATM6|PIP24_MAIZE Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1 Back     alignment and function description
>sp|Q6K215|PIP22_ORYSJ Probable aquaporin PIP2-2 OS=Oryza sativa subsp. japonica GN=PIP2-2 PE=2 SV=1 Back     alignment and function description
>sp|Q9ATM4|PIP27_MAIZE Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1 Back     alignment and function description
>sp|Q8H5N9|PIP21_ORYSJ Probable aquaporin PIP2-1 OS=Oryza sativa subsp. japonica GN=PIP2-1 PE=2 SV=1 Back     alignment and function description
>sp|Q84RL7|PIP21_MAIZE Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query267
171190270278 aquaporin PIP2;4 [Gossypium hirsutum] 0.895 0.859 0.926 1e-126
171190268278 aquaporin PIP2;3 [Gossypium hirsutum] 0.895 0.859 0.922 1e-126
256568423278 PIP protein [Gossypium hirsutum] 0.895 0.859 0.913 1e-125
256568425278 PIP protein [Gossypium hirsutum] 0.895 0.859 0.913 1e-125
395146531 694 putative aquaporin PIP2-8 [Linum usitati 0.910 0.350 0.905 1e-125
60498693281 plasma membrane intrinsic protein 2;5 [M 0.906 0.861 0.909 1e-125
225428051279 PREDICTED: aquaporin PIP2-7 [Vitis vinif 0.898 0.860 0.901 1e-125
111379080279 putative aquaporin [Vitis vinifera] gi|1 0.898 0.860 0.897 1e-124
182408102280 aquaporin [Manihot esculenta] 0.902 0.860 0.901 1e-124
257786549278 plasma membrane aquaporin 2 [Hevea brasi 0.895 0.859 0.905 1e-124
>gi|171190270|gb|ACB42441.1| aquaporin PIP2;4 [Gossypium hirsutum] Back     alignment and taxonomy information
 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 226/244 (92%), Positives = 232/244 (95%), Gaps = 5/244 (2%)

Query: 1   MSKEVNEEGQTHRHHHGKDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVAT 60
           MSKEV+EEGQ       KDYVDPPPAPLIDMAELK WSFYRALIAEF+ATLLFLYV+VAT
Sbjct: 1   MSKEVSEEGQGR-----KDYVDPPPAPLIDMAELKSWSFYRALIAEFIATLLFLYVTVAT 55

Query: 61  VIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIR 120
           VIGHKKQ DAC GVGLLGIAWAFGGMIF+LVYCTAGISGGHINPAVTFGLFLARKVSLIR
Sbjct: 56  VIGHKKQQDACDGVGLLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIR 115

Query: 121 AVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYT 180
           AVAYMV+QCLGAICGVGLVKAFMKH YNSLGGGANTVASGYN G+ALGAEIIGTFVLVYT
Sbjct: 116 AVAYMVSQCLGAICGVGLVKAFMKHPYNSLGGGANTVASGYNNGTALGAEIIGTFVLVYT 175

Query: 181 VFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKA 240
           VFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKA
Sbjct: 176 VFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKA 235

Query: 241 WDDH 244
           WDDH
Sbjct: 236 WDDH 239

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|171190268|gb|ACB42440.1| aquaporin PIP2;3 [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|256568423|gb|ACU87555.1| PIP protein [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|256568425|gb|ACU87556.1| PIP protein [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|395146531|gb|AFN53685.1| putative aquaporin PIP2-8 [Linum usitatissimum] Back     alignment and taxonomy information
>gi|60498693|dbj|BAD90701.1| plasma membrane intrinsic protein 2;5 [Mimosa pudica] Back     alignment and taxonomy information
>gi|225428051|ref|XP_002279366.1| PREDICTED: aquaporin PIP2-7 [Vitis vinifera] gi|374341145|gb|AEZ35023.1| plasma membrane 2;2 aquaporin [Vitis vinifera] Back     alignment and taxonomy information
>gi|111379080|gb|ABH09327.1| putative aquaporin [Vitis vinifera] gi|124702519|gb|ABN14351.1| aquaporin PIP2;2 [Vitis vinifera] gi|147816494|emb|CAN77349.1| hypothetical protein VITISV_007541 [Vitis vinifera] Back     alignment and taxonomy information
>gi|182408102|gb|ACB87734.1| aquaporin [Manihot esculenta] Back     alignment and taxonomy information
>gi|257786549|gb|ACV66986.1| plasma membrane aquaporin 2 [Hevea brasiliensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query267
TAIR|locus:2131601280 PIP3 "plasma membrane intrinsi 0.898 0.857 0.888 1.5e-115
TAIR|locus:2039385278 PIP2;8 "plasma membrane intrin 0.895 0.859 0.893 2.8e-114
TAIR|locus:2175831291 PIP2;4 "plasma membrane intrin 0.883 0.810 0.784 1.2e-99
TAIR|locus:2084031287 PIP2A "plasma membrane intrins 0.906 0.843 0.772 5e-99
TAIR|locus:2061773285 PIP2B "plasma membrane intrins 0.850 0.796 0.806 2.8e-98
TAIR|locus:2061763285 RD28 "RESPONSIVE TO DESICCATIO 0.850 0.796 0.806 9.4e-98
TAIR|locus:2064885289 PIP2E "plasma membrane intrins 0.850 0.785 0.789 4.1e-97
TAIR|locus:2082642286 PIP2;5 "plasma membrane intrin 0.902 0.842 0.748 5.9e-96
TAIR|locus:2126026287 PIP1;4 "plasma membrane intrin 0.850 0.790 0.775 2.3e-94
TAIR|locus:2025391286 PIP1C "plasma membrane intrins 0.850 0.793 0.775 3e-94
TAIR|locus:2131601 PIP3 "plasma membrane intrinsic protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1139 (406.0 bits), Expect = 1.5e-115, P = 1.5e-115
 Identities = 216/243 (88%), Positives = 230/243 (94%)

Query:     1 MSKEVNEEGQTHRHHHGKDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVAT 60
             MSKEV+EEG+TH   HGKDYVDPPPAPL+DM ELK WSFYRALIAEF+ATLLFLYV+VAT
Sbjct:     1 MSKEVSEEGKTH---HGKDYVDPPPAPLLDMGELKSWSFYRALIAEFIATLLFLYVTVAT 57

Query:    61 VIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIR 120
             VIGHKKQ+  C GVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSL+R
Sbjct:    58 VIGHKKQTGPCDGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVR 117

Query:   121 AVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYT 180
             A+ YM+AQCLGAICGVG VKAFMK  YN+LGGGANTVA GY+KG+ALGAEIIGTFVLVYT
Sbjct:   118 ALGYMIAQCLGAICGVGFVKAFMKTPYNTLGGGANTVADGYSKGTALGAEIIGTFVLVYT 177

Query:   181 VFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKA 240
             VFSATDPKRSARDSH+PVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNN+KA
Sbjct:   178 VFSATDPKRSARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKA 237

Query:   241 WDD 243
             WDD
Sbjct:   238 WDD 240
GO:0005215 "transporter activity" evidence=IEA
GO:0005886 "plasma membrane" evidence=ISM;IDA;TAS
GO:0006810 "transport" evidence=IEA;ISS
GO:0006833 "water transport" evidence=IEA
GO:0015250 "water channel activity" evidence=ISS;IDA
GO:0016020 "membrane" evidence=IEA;ISS;IDA
GO:0016021 "integral to membrane" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
GO:0046658 "anchored to plasma membrane" evidence=IDA
GO:0005773 "vacuole" evidence=IDA
GO:0005634 "nucleus" evidence=IDA
GO:0009737 "response to abscisic acid stimulus" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
TAIR|locus:2039385 PIP2;8 "plasma membrane intrinsic protein 2;8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175831 PIP2;4 "plasma membrane intrinsic protein 2;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084031 PIP2A "plasma membrane intrinsic protein 2A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061773 PIP2B "plasma membrane intrinsic protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061763 RD28 "RESPONSIVE TO DESICCATION 28" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2064885 PIP2E "plasma membrane intrinsic protein 2E" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082642 PIP2;5 "plasma membrane intrinsic protein 2;5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2126026 PIP1;4 "plasma membrane intrinsic protein 1;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025391 PIP1C "plasma membrane intrinsic protein 1C" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P25794PIP2_PEANo assigned EC number0.70940.87260.8062N/Ano
Q8GRI8PIP25_ORYSJNo assigned EC number0.750.89510.8445nono
Q8LAA6PIP15_ARATHNo assigned EC number0.74780.87640.8153nono
P93004PIP27_ARATHNo assigned EC number0.88520.90260.8607yesno
Q41870PIP11_MAIZENo assigned EC number0.71800.84640.7874N/Ano
P43287PIP22_ARATHNo assigned EC number0.77290.89510.8385nono
P43286PIP21_ARATHNo assigned EC number0.7720.90630.8432nono
Q84RL7PIP21_MAIZENo assigned EC number0.7760.90630.8344N/Ano
Q8H5N9PIP21_ORYSJNo assigned EC number0.77910.90260.8310nono
Q9AQU5PIP13_MAIZENo assigned EC number0.74440.85010.7773N/Ano
Q8GRT8PIP24_ORYSJNo assigned EC number0.74600.90630.8461nono
Q9AR14PIP15_MAIZENo assigned EC number0.71070.90630.8402N/Ano
Q7XLR1PIP26_ORYSJNo assigned EC number0.82110.90260.8546yesno
Q08451PIP1_SOLLCNo assigned EC number0.75330.85010.7937N/Ano
P61838PIP11_VICFANo assigned EC number0.75770.85010.7937N/Ano
P42767PIP1_ATRCANo assigned EC number0.83670.90630.8581N/Ano
Q9ATN0PIP16_MAIZENo assigned EC number0.73240.85390.7702N/Ano
Q9ZV07PIP26_ARATHNo assigned EC number0.75290.89880.8304nono
Q6K215PIP22_ORYSJNo assigned EC number0.75390.91380.8472nono
Q39196PIP14_ARATHNo assigned EC number0.75640.87640.8153nono
Q9SV31PIP25_ARATHNo assigned EC number0.7480.90260.8426nono
Q9XF59PIP12_MAIZENo assigned EC number0.73560.85010.7854N/Ano
Q9XF58PIP25_MAIZENo assigned EC number0.76580.89880.8421N/Ano
Q9FF53PIP24_ARATHNo assigned EC number0.78130.88760.8144nono
Q9ZVX8PIP28_ARATHNo assigned EC number0.89340.89510.8597nono
Q7XSQ9PIP12_ORYSJNo assigned EC number0.71070.90630.8402nono
Q9ATM4PIP27_MAIZENo assigned EC number0.75690.91010.8466N/Ano
Q9ATM5PIP26_MAIZENo assigned EC number0.74200.91380.8472N/Ano
Q9ATM6PIP24_MAIZENo assigned EC number0.75790.91380.8472N/Ano
Q9ATM7PIP23_MAIZENo assigned EC number0.7560.90630.8373N/Ano
Q9ATM8PIP22_MAIZENo assigned EC number0.75790.90630.8287N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
PIP2
SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (279 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00019541001
SubName- Full=Drought responsive element binding protein (Chromosome chr7 scaffold_20, whole ge [...] (152 aa)
      • 0.483
GSVIVG00003297001
SubName- Full=Chromosome undetermined scaffold_141, whole genome shotgun sequence; (522 aa)
•     • 0.435

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query267
pfam00230218 pfam00230, MIP, Major intrinsic protein 6e-89
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 2e-70
TIGR00861216 TIGR00861, MIP, MIP family channel proteins 2e-61
COG0580241 COG0580, GlpF, Glycerol uptake facilitator and rel 4e-43
PLN00166250 PLN00166, PLN00166, aquaporin TIP2; Provisional 1e-32
PLN00027252 PLN00027, PLN00027, aquaporin TIP; Provisional 3e-32
PRK05420231 PRK05420, PRK05420, aquaporin Z; Provisional 6e-29
PLN00167256 PLN00167, PLN00167, aquaporin TIP5; Provisional 1e-25
PTZ00016294 PTZ00016, PTZ00016, aquaglyceroporin; Provisional 5e-22
PLN00026298 PLN00026, PLN00026, aquaporin NIP; Provisional 1e-19
PLN00184296 PLN00184, PLN00184, aquaporin NIP1; Provisional 2e-19
PLN00183274 PLN00183, PLN00183, putative aquaporin NIP7; Provi 3e-16
PLN00182283 PLN00182, PLN00182, putative aquaporin NIP4; Provi 1e-15
COG0580241 COG0580, GlpF, Glycerol uptake facilitator and rel 9e-05
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 1e-04
>gnl|CDD|215807 pfam00230, MIP, Major intrinsic protein Back     alignment and domain information 
 Score =  262 bits (672), Expect = 6e-89
 Identities = 112/212 (52%), Positives = 138/212 (65%), Gaps = 12/212 (5%)

Query: 33  ELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVY 92
           EL+  SF+RA+IAEF+ATLLF++  V + +G KK        GLL +A AFG  +F LVY
Sbjct: 1   ELRSVSFWRAVIAEFLATLLFVFFGVGSALGVKKLYG-----GLLAVALAFGLALFTLVY 55

Query: 93  CTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGG 152
           CT  ISG H+NPAVTF L + R++SL+RA+ Y++AQ LGAICG  L+K          GG
Sbjct: 56  CTGHISGAHLNPAVTFALLVGRRISLLRAIYYIIAQLLGAICGAALLKGVTN-GLQRAGG 114

Query: 153 GANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVH 212
            AN++A G N G A   EII TF LVYTVF+ TD  R+    HV   APL IGFAVF+ H
Sbjct: 115 FANSLAPGVNAGQAFVVEIILTFQLVYTVFATTDDPRNGSLGHV---APLAIGFAVFLNH 171

Query: 213 LATIPITGTGINPARSFGAAVIYNNDKAWDDH 244
           LA  P TG  +NPARSFG AV+      WDDH
Sbjct: 172 LAGGPYTGASMNPARSFGPAVVLWK---WDDH 200

MIP (Major Intrinsic Protein) family proteins exhibit essentially two distinct types of channel properties: (1) specific water transport by the aquaporins, and (2) small neutral solutes transport, such as glycerol by the glycerol facilitators. Length = 218
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>gnl|CDD|233156 TIGR00861, MIP, MIP family channel proteins Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|165733 PLN00166, PLN00166, aquaporin TIP2; Provisional Back     alignment and domain information
>gnl|CDD|177664 PLN00027, PLN00027, aquaporin TIP; Provisional Back     alignment and domain information
>gnl|CDD|235453 PRK05420, PRK05420, aquaporin Z; Provisional Back     alignment and domain information
>gnl|CDD|215085 PLN00167, PLN00167, aquaporin TIP5; Provisional Back     alignment and domain information
>gnl|CDD|240230 PTZ00016, PTZ00016, aquaglyceroporin; Provisional Back     alignment and domain information
>gnl|CDD|177663 PLN00026, PLN00026, aquaporin NIP; Provisional Back     alignment and domain information
>gnl|CDD|177778 PLN00184, PLN00184, aquaporin NIP1; Provisional Back     alignment and domain information
>gnl|CDD|215092 PLN00183, PLN00183, putative aquaporin NIP7; Provisional Back     alignment and domain information
>gnl|CDD|165748 PLN00182, PLN00182, putative aquaporin NIP4; Provisional Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 267
KOG0223238 consensus Aquaporin (major intrinsic protein famil 100.0
PLN00184296 aquaporin NIP1; Provisional 100.0
COG0580241 GlpF Glycerol uptake facilitator and related perme 100.0
KOG0224316 consensus Aquaporin (major intrinsic protein famil 100.0
PTZ00016294 aquaglyceroporin; Provisional 100.0
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 100.0
PRK05420231 aquaporin Z; Provisional 100.0
PLN00166250 aquaporin TIP2; Provisional 100.0
PLN00167256 aquaporin TIP5; Provisional 100.0
PLN00182283 putative aquaporin NIP4; Provisional 100.0
PLN00027252 aquaporin TIP; Provisional 100.0
PLN00026298 aquaporin NIP; Provisional 100.0
PLN00183274 putative aquaporin NIP7; Provisional 100.0
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 100.0
TIGR00861216 MIP MIP family channel proteins. processes. Some m 100.0
PLN00182283 putative aquaporin NIP4; Provisional 99.61
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 99.57
PLN00026298 aquaporin NIP; Provisional 99.55
PLN00183274 putative aquaporin NIP7; Provisional 99.54
TIGR00861216 MIP MIP family channel proteins. processes. Some m 99.48
PLN00184 296 aquaporin NIP1; Provisional 99.45
KOG0223238 consensus Aquaporin (major intrinsic protein famil 99.41
PLN00167 256 aquaporin TIP5; Provisional 99.33
PLN00166250 aquaporin TIP2; Provisional 99.33
PRK05420231 aquaporin Z; Provisional 99.28
PLN00027252 aquaporin TIP; Provisional 99.28
PTZ00016294 aquaglyceroporin; Provisional 99.21
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 99.12
COG0580241 GlpF Glycerol uptake facilitator and related perme 99.04
KOG0224 316 consensus Aquaporin (major intrinsic protein famil 98.33
COG2116265 FocA Formate/nitrite family of transporters [Inorg 94.75
PRK10805285 formate transporter; Provisional 91.65
PF01226250 Form_Nir_trans: Formate/nitrite transporter; Inter 90.48
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=5.9e-53  Score=362.62  Aligned_cols=221  Identities=51%  Similarity=0.752  Sum_probs=200.6

Q ss_pred             hcccHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHHHhccCCCccChHHHHHHHH
Q 024444           33 ELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFL  112 (267)
Q Consensus        33 ~~~~~~~~~~~~~EflgT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v~~~i~~~~~iSGah~NPavTla~~l  112 (267)
                      +.+.++.+|++++||++|++++|++|+++...+..   +...+.+.+++.+|+++++.+++++++||||+|||||+++++
T Consensus         4 ~~~~~~~~~~~~aEF~~T~~~vf~g~~~~~~~~~~---~~~~~l~~ial~~Gl~v~v~i~~~g~iSGaH~NPAVT~a~~~   80 (238)
T KOG0223|consen    4 ELLSVSFLRALIAEFLATFLFVFAGCGSVVVNPKY---GGPVGLLGIALAFGLAVFVLVYSTGHISGAHFNPAVTLAFAV   80 (238)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---CCCchhHHHHHHHHHHHHHHHhhhccccccccCHHHHHHHHH
Confidence            44568899999999999999999999988766542   234567889999999999999999999999999999999999


Q ss_pred             hccCcchhHHHHHHHHhHHHHHHHHHHHHhhchhhhhcCCCcccccCCCccchhHHHHHHHHHHHHHHHHH-hcCCCCCC
Q 024444          113 ARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFS-ATDPKRSA  191 (267)
Q Consensus       113 ~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~T~~l~~~il~-~~~~~~~~  191 (267)
                      .|++++.+++.|+++|++|+++|+.+.+.+.++.....+.+.+.+.++.+..|+++.|++.||+|++++++ .+|+|++ 
T Consensus        81 ~~~isl~~~~~Y~vaQ~lGa~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~E~ilTf~Lv~~v~~~a~d~~~~-  159 (238)
T KOG0223|consen   81 GGKISLFRAVAYIVAQLLGAIAGAALLKVVTPGQYNRKGLGLTGLAPGLSTGQGLVIEIILTFILVFTVFATATDPRRS-  159 (238)
T ss_pred             hCCCcHHHhHHHHHHHHHHHHHHHHHHheecCcccccCCcceeccCCCCCcchhHHHHHHHHHHHhheeEEEeecCCCc-
Confidence            99999999999999999999999999999998764444555667888999999999999999999999998 7777765 


Q ss_pred             CCCCCCCchhHHHHHHHHHHHHHhhCCCcCccchhhhHHHHHhcCCCCCCCcceEEeechhHHHHHHHHHHHHhh
Q 024444          192 RDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHVRKKLCISEFCVCLLCFYDILN  266 (267)
Q Consensus       192 ~~~~~~~l~~~~igl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~~~~~~~~~wVy~v~P~~Ga~~a~~ly~~~~  266 (267)
                            .+.|+.||+++.+.++..+++||++|||||+|||+++.+   .|++|||||+||++|+++++++||++.
T Consensus       160 ------~~a~l~IG~~v~~~~l~~g~~TG~sMNPArSfGpAvv~~---~w~~hwiYwvgP~~Ga~~a~~~y~~v~  225 (238)
T KOG0223|consen  160 ------ELAPLAIGFSVGLNILAAGPFTGASMNPARSFGPAVVYG---SWDDHWIYWVGPLLGAILAALIYRLVF  225 (238)
T ss_pred             ------ccHHHHHHHHHHHHHHeecCcCcCccCcHHHhhHHHHhc---CCCcEEEEEhhHHHHHHHHHHHHHHhc
Confidence                  378999999999999999999999999999999999986   499999999999999999999999874

>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10805 formate transporter; Provisional Back     alignment and domain information
>PF01226 Form_Nir_trans: Formate/nitrite transporter; InterPro: IPR000292 Proteins in this entry belong to the Formate-Nitrite Transporter (FNT) family (TC 2 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query267
2b5f_A303 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-121
1z98_A281 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-120
3cn6_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-120
3cll_A300 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-120
3cn5_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-120
1j4n_A271 Crystal Structure Of The Aqp1 Water Channel Length 1e-35
1fqy_A269 Structure Of Aquaporin-1 At 3.8 A Resolution By Ele 3e-35
3iyz_A340 Structure Of Aquaporin-4 S180d Mutant At 10.0 A Res 1e-31
2d57_A301 Double Layered 2d Crystal Structure Of Aquaporin-4 1e-31
2zz9_A301 Structure Of Aquaporin-4 S180d Mutant At 2.8 A Reso 1e-31
3gd8_A223 Crystal Structure Of Human Aquaporin 4 At 1.8 And I 1e-29
1ymg_A263 The Channel Architecture Of Aquaporin O At 2.2 Angs 2e-25
2b6o_A263 Electron Crystallographic Structure Of Lens Aquapor 2e-25
3d9s_A266 Human Aquaporin 5 (Aqp5) - High Resolution X-Ray St 1e-24
1sor_A235 Aquaporin-0 Membrane Junctions Reveal The Structure 8e-24
3m9i_A220 Electron Crystallographic Structure Of Lens Aquapor 1e-23
2w1p_A279 1.4 Angstrom Crystal Structure Of P.Pastoris Aquapo 9e-17
1rc2_B231 2.5 Angstrom Resolution X-Ray Structure Of Aquapori 1e-15
2o9f_A234 Crystal Structure Of Aqpz Mutant L170c Length = 234 2e-15
3nk5_A234 Crystal Structure Of Aqpz Mutant F43w Length = 234 3e-15
2o9d_A234 Crystal Structure Of Aqpz Mutant T183c. Length = 23 6e-15
2o9e_A234 Crystal Structure Of Aqpz Mutant T183c Complexed Wi 7e-15
3llq_A256 Aquaporin Structure From Plant Pathogen Agrobacteri 1e-14
3nka_A234 Crystal Structure Of Aqpz H174g,T183f Length = 234 1e-13
1ldf_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 3e-13
3nkc_A234 Crystal Structure Of Aqpz F43w,H174g,T183f Length = 3e-13
1fx8_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 9e-13
2evu_A246 Crystal Structure Of Aquaporin Aqpm At 2.3a Resolut 6e-12
3ne2_A246 Archaeoglobus Fulgidus Aquaporin Length = 246 3e-11
3c02_A258 X-Ray Structure Of The Aquaglyceroporin From Plasmo 5e-04
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An Open Conformation To 3.9 Resolution Length = 303 Back     alignment and structure 
Iteration: 1

 Score =  429 bits (1104), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 206/244 (84%), Positives = 224/244 (91%), Gaps = 2/244 (0%)
Query: 1   MSKEVNEEGQTHRHHHGKDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVAT 60
           MSKEV+EE Q H+H  GKDYVDPPPAP  D+ ELKLWSF+RA IAEF+ATLLFLY++VAT
Sbjct: 1   MSKEVSEEAQAHQH--GKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVAT 58
Query: 61  VIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIR 120
           VIGH K++  CG VGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSL+R
Sbjct: 59  VIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLR 118
Query: 121 AVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYT 180
           A+ YM+AQCLGAICGVGLVKAFMK  YN  GGGAN+VA GYNKG+ALGAEIIGTFVLVYT
Sbjct: 119 ALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYT 178
Query: 181 VFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKA 240
           VFSATDPKRSARDSHVP+LAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVI+N++K 
Sbjct: 179 VFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKV 238
Query: 241 WDDH 244
           WDD 
Sbjct: 239 WDDQ 242
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A Closed Conformation Length = 281 Back     alignment and structure
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e Mutant Length = 304 Back     alignment and structure
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e Mutant Length = 300 Back     alignment and structure
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e, S274e Mutant Length = 304 Back     alignment and structure
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel Length = 271 Back     alignment and structure
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron Crystallography Length = 269 Back     alignment and structure
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution From Electron Micrograph Length = 340 Back     alignment and structure
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4 (Aqp4m23) At 3.2 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its Mechanism Of Conductance Length = 223 Back     alignment and structure
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom Resolution Length = 263 Back     alignment and structure
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore State Length = 263 Back     alignment and structure
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure Length = 266 Back     alignment and structure
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A Closed Water Pore Length = 235 Back     alignment and structure
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp Mip) In E. Coli Polar Lipids Length = 220 Back     alignment and structure
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin, Aqy1, In A Closed Conformation At Ph 8.0 Length = 279 Back     alignment and structure
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z Length = 231 Back     alignment and structure
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c Length = 234 Back     alignment and structure
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w Length = 234 Back     alignment and structure
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c. Length = 234 Back     alignment and structure
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With Mercury Length = 234 Back     alignment and structure
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium Tumerfaciens Length = 256 Back     alignment and structure
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f Length = 234 Back     alignment and structure
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) Mutation W48f, F200t Length = 281 Back     alignment and structure
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f Length = 234 Back     alignment and structure
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) With Substrate Glycerol Length = 281 Back     alignment and structure
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution Length = 246 Back     alignment and structure
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin Length = 246 Back     alignment and structure
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium Falciparum Length = 258 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query267
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 1e-128
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 1e-101
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 5e-96
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 7e-94
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 7e-94
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 1e-93
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 3e-93
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 1e-92
2o9g_A234 Aquaporin Z; integral membrane protein, structural 1e-90
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 3e-90
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 2e-70
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 4e-04
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 3e-45
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 1e-05
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 5e-45
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 5e-04
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Length = 304 Back     alignment and structure
 Score =  365 bits (938), Expect = e-128
 Identities = 204/244 (83%), Positives = 222/244 (90%), Gaps = 2/244 (0%)

Query: 1   MSKEVNEEGQTHRHHHGKDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVAT 60
           MSKEV+EE Q H+H   KDYVDPPPAP  D+ ELKLWSF+RA IAEF+ATLLFLY++VAT
Sbjct: 24  MSKEVSEEAQAHQHG--KDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVAT 81

Query: 61  VIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIR 120
           VIGH K++  CG VGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV L+R
Sbjct: 82  VIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVELLR 141

Query: 121 AVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYT 180
           A+ YM+AQCLGAICGVGLVKAFMK  YN  GGGAN+VA GYNKG+ALGAEIIGTFVLVYT
Sbjct: 142 ALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYT 201

Query: 181 VFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKA 240
           VFSATDPKRSARDSHVP+LAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVI+N++K 
Sbjct: 202 VFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKV 261

Query: 241 WDDH 244
           WDD 
Sbjct: 262 WDDQ 265
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Length = 340 Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Length = 301 Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Length = 271 Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Length = 256 Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Length = 263 Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Length = 266 Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Length = 279 Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Length = 234 Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Length = 223 Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Length = 246 Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Length = 246 Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Length = 258 Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Length = 258 Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Length = 281 Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Length = 281 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query267
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 100.0
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 100.0
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 100.0
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 100.0
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 100.0
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 100.0
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 100.0
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 100.0
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 100.0
2o9g_A234 Aquaporin Z; integral membrane protein, structural 100.0
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 100.0
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 99.6
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 99.35
2o9g_A234 Aquaporin Z; integral membrane protein, structural 99.35
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 99.34
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 99.34
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 99.32
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 99.3
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 99.29
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 99.29
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 99.26
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 99.24
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 99.23
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 99.22
3kcu_A285 Probable formate transporter 1; TCDB ID 2.A.44.1.1 89.17
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
Probab=100.00  E-value=7.5e-61  Score=426.56  Aligned_cols=264  Identities=77%  Similarity=1.247  Sum_probs=206.1

Q ss_pred             CccccccccccccCCCCCCCCCCCCCCccchhhcccHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCcchHHHH
Q 024444            1 MSKEVNEEGQTHRHHHGKDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIA   80 (267)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~EflgT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (267)
                      |+||+++ .+ ....+.|++++|++.+..+.+|+++++++|++++||+||++|+|++++++......+++....+.+.++
T Consensus        24 ~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~e~~~~~~~r~~lAEfiGT~lLv~~g~gsv~~~~~~~~~~~~~g~l~ia  101 (304)
T 3cn5_A           24 MSKEVSE-EA-QAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIA  101 (304)
T ss_dssp             ---------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTTCSCHHHHHH
T ss_pred             HHHHhhc-cc-cccccCCCccCCCcccccCccccccHHHHHHHHHHHHHHHHHHHHHhHHHeEeccccCCCCCCCceeeh
Confidence            5666633 22 122346899999999999999999999999999999999999999999877544332233456788899


Q ss_pred             HHHHHHHHHHHHHHhccCCCccChHHHHHHHHhccCcchhHHHHHHHHhHHHHHHHHHHHHhhchhhhhcCCCcccccCC
Q 024444           81 WAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASG  160 (267)
Q Consensus        81 l~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~~~~~~~~  160 (267)
                      +++|+++++.+|+++++||||+|||||+++++.|+++|++++.|+++|++|+++|+.+++.++++.++..+.+.+.+.++
T Consensus       102 la~Glav~~~v~~~g~iSGaHlNPAVTla~~l~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~~~~~~~g~~~~~~~  181 (304)
T 3cn5_A          102 WAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALG  181 (304)
T ss_dssp             HHHHHHHHHHHHHHTTTTCCCCSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHTTTTCCCCCTT
T ss_pred             hhhhhhhheeeeEeeccCCCccCcHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcccccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999998776665555556677


Q ss_pred             CccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhCCCcCccchhhhHHHHHhcCCCCC
Q 024444          161 YNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKA  240 (267)
Q Consensus       161 ~~~~~~~~~E~~~T~~l~~~il~~~~~~~~~~~~~~~~l~~~~igl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~~~~~  240 (267)
                      .+..++|+.|+++||+|+++|+.++|+|+..+.++.+.+.|+.||+++.+++++.+++||++||||||||||++++++.+
T Consensus       182 ~s~~~~f~~E~i~TfiLv~~Il~~~d~~~~~~~~~~~~lapl~IGl~V~~~~l~~g~~TG~amNPAR~~GPal~~~~~~~  261 (304)
T 3cn5_A          182 YNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKV  261 (304)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHTEEEEEESTTSCCEEECHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHCCHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhheecCccCCCCcccccchHHHHHHHHHHHHHhccCCCccccChHHHHHHHHHHccCCC
Confidence            88999999999999999999999888765543222244899999999999999999999999999999999999654457


Q ss_pred             CCcceEEeechhHHHHHHHHHHHHhh
Q 024444          241 WDDHVRKKLCISEFCVCLLCFYDILN  266 (267)
Q Consensus       241 ~~~~wVy~v~P~~Ga~~a~~ly~~~~  266 (267)
                      |+++||||++|++|+++|+++|+++.
T Consensus       262 w~~~WvywvgPiiGa~laa~~y~~l~  287 (304)
T 3cn5_A          262 WDDQWIFWVGPFIGAAVAAAYHQYVL  287 (304)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHHHHTTS
T ss_pred             cCceEEEeehHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999874
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A 3q7k_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 267
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 1e-46
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 3e-05
d1ymga1234 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [ 4e-42
d1ymga1234 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [ 8e-04
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 6e-36
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 2e-05
d1rc2a_231 f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId 1e-33
d1rc2a_231 f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId 5e-04
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-1
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  154 bits (389), Expect = 1e-46
 Identities = 84/217 (38%), Positives = 124/217 (57%), Gaps = 12/217 (5%)

Query: 32  AELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDA----CGGVGLLGIAWAFGGMI 87
           +E K   F+RA++AEF+A +LF+++S+ + +G      +          + ++ AFG  I
Sbjct: 3   SEFKKKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSI 62

Query: 88  FVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEY 147
             L      ISG H+NPAVT GL L+ ++S++RA+ Y++AQC+GAI    ++        
Sbjct: 63  ATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLP 122

Query: 148 NSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFA 207
           ++   G N +A G N G  LG EIIGT  LV  V + TD +R      +    PL IGF+
Sbjct: 123 DN-SLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRD----LGGSGPLAIGFS 177

Query: 208 VFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDH 244
           V + HL  I  TG GINPARSFG++VI +N   + DH
Sbjct: 178 VALGHLLAIDYTGCGINPARSFGSSVITHN---FQDH 211
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Length = 234 Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Length = 234 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Length = 231 Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Length = 231 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query267
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 100.0
d1ymga1234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 100.0
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 99.35
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 99.28
d1ymga1234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 99.26
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 99.14
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Glycerol uptake facilitator protein GlpF
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.7e-52  Score=363.42  Aligned_cols=222  Identities=26%  Similarity=0.352  Sum_probs=193.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHHHhccCCCccChHHHHHHHHhccCcc
Q 024444           39 FYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSL  118 (267)
Q Consensus        39 ~~~~~~~EflgT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~~~  118 (267)
                      +.|++++||+||++|+|++++++......+   ...+.+.+++++|+++++.+++++++||||+|||||+++++.|+++|
T Consensus         2 l~~~~lAEflGT~~lvf~g~g~~~~~~~~~---~~~~~~~ia~~~g~~v~~~i~~~g~vSGaH~NPAVTla~~i~g~~~~   78 (254)
T d1fx8a_           2 LKGQCIAEFLGTGLLIFFGVGCVAALKVAG---ASFGQWEISVIWGLGVAMAIYLTAGVSGAHLNPAVTIALWLFACFDK   78 (254)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSC---CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHSCCCG
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhccccC---CCcchHHHHHHHHHHHHHHHHHHhccccceEChhhHHHHHHcCCCcH
Confidence            568999999999999999988766544332   23456789999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHhHHHHHHHHHHHHhhchhhhhcC-----------------CCcccccCCCccchhHHHHHHHHHHHHHHH
Q 024444          119 IRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLG-----------------GGANTVASGYNKGSALGAEIIGTFVLVYTV  181 (267)
Q Consensus       119 ~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~E~~~T~~l~~~i  181 (267)
                      .+.+.|+++|++|+++|+++.+.++++.+....                 ...+.+.++.+..++|+.|+++|++|++++
T Consensus        79 ~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~p~~~~s~~~~~~~E~v~Tf~lv~~i  158 (254)
T d1fx8a_          79 RKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLI  158 (254)
T ss_dssp             GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSGGGHHHHTTTSCCCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccCCccchhhcceeecCCCccccHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999886543311                 113345677889999999999999999999


Q ss_pred             HHhcCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhCCCcCccchhhhHHHHHhc----------CCCCCCCcceEEeech
Q 024444          182 FSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIY----------NNDKAWDDHVRKKLCI  251 (267)
Q Consensus       182 l~~~~~~~~~~~~~~~~l~~~~igl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~----------~~~~~~~~~wVy~v~P  251 (267)
                      +.+.|++|+.+.   +.+.|+.+|+.+.++.++.+++||++||||||||||++.          .++.+|+|+||||++|
T Consensus       159 l~~~~~~~~~~~---~~~~~l~iG~~v~~~~~~~g~~TG~s~NPAR~lgpai~~~~~~~~~~~~~~~~~~~~~wvy~vgP  235 (254)
T d1fx8a_         159 LALTDDGNGVPR---GPLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGP  235 (254)
T ss_dssp             HHHHCTTSSSCC---GGGHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTTTTTHHHHTTCSSCTTHHHHHTT
T ss_pred             HHHhcCccCCCc---ccccchHHHHHHHHHHhhcccccccccChHHHHHHHHHHhhcccccccccCCCCCCeeehHhHHH
Confidence            999998876533   357899999999999999999999999999999999985          1246899999999999


Q ss_pred             hHHHHHHHHHHHHhh
Q 024444          252 SEFCVCLLCFYDILN  266 (267)
Q Consensus       252 ~~Ga~~a~~ly~~~~  266 (267)
                      ++|+++++++||++.
T Consensus       236 ~~Ga~ia~~~y~~l~  250 (254)
T d1fx8a_         236 IVGAIVGAFAYRKLI  250 (254)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999999873
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure