Citrus Sinensis ID: 024468

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------
MAFSGVHRDRGELRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKNHSDSNYKLAKEGLLSKQVPIVPSHVHSINDSLSAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVASLFPNHSVLDVKNQWVSFITDSPKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGPNCPSLPARMAQPTNGKLVWFLDKPAASKLQSVQFCE
ccccccccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHccccccccccccEEEEEccccccccccccHHHHHHHHHHcccccccccccEEEccccccHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEccccccccccccccccccccccccEEEEccccccccccEEEcHHHHHccccEEEEEEcccHHHHHHHHHHcccccccccccEEEcccccEEEEEEEHHHHHccccccccc
cccccccccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHcHHHcccccccEEEEEEcccccccccccHHHHHHHHHHHHccccccHHccccccccccHHHHHHHHHHHHHHHccccEEEcccccccccEEEEEEcccccccEEEcccccccccccccEEEEEcccccccccEEEEcHHHHHHccEEEEEEccccHHHHHHHHHcccccccccccHHHEcccccEEEEEEcHHHHHHHccccccc
mafsgvhrdrgelrIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGklceapynktvdWAKWYIFWADERVvaknhsdsnyklakegllskqvpivpshvhsindslsaeeaadEYEFDIRQLVKTRMVCvsdisdcpkfDLILlgmgsdghvaslfpnhsvldvknQWVSfitdspkppperitftlpvinsASIVVVVVTGESKAEAVHLAIddlgpncpslparmaqptngklvwfldkpaasklqsvqfce
mafsgvhrdrgelriHESVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKNHSDSNYKLAKEGLLSKQVPIVPSHVHSINDSLSAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVASLFPNHSVLDVKNQWVSFITDSPKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGPNCPSLPARMAQPTNGKLVWFLDKPaasklqsvqfce
MAFSGVHRDRGELRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKNHSDSNYKLAKEGLLSKQVPIVPSHVHSINDSLSAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVASLFPNHSVLDVKNQWVSFITDSPKPPPERITFTLPVINSASIvvvvvTGESKAEAVHLAIDDLGPNCPSLPARMAQPTNGKLVWFLDKPAASKLQSVQFCE
*********************LSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKNHSDSNYKLAKEGLLSKQVPIVPSHVHSI********AADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVASLFPNHSVLDVKNQWVSFITD******ERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGPNCPSLPA*MAQPTNGKLVWFLDK*************
*************RIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKNHSDSNYKLAKEGLLSKQVPIVPSHVHSINDSLSAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVASLFPNHSVLDVKNQWVSFITDSPKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGPNCPSLPARMAQPTNGKLVWFLDKPAASKLQSV****
*********RGELRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKNHSDSNYKLAKEGLLSKQVPIVPSHVHSINDSLSAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVASLFPNHSVLDVKNQWVSFITDSPKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGPNCPSLPARMAQPTNGKLVWFLDKPAAS*********
********DRGELRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKNHSDSNYKLAKEGLLSKQVPIVPSHVHSINDSLSAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVASLFPNHSVLDVKNQWVSFITDSPKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGPNCPSLPARMAQPTNGKLVWFLDKPAASKLQ******
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAFSGVHRDRGELRIHESxxxxxxxxxxxxxxxxxxxxxERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKNHSDSNYKLAKEGLLSKQVPIVPSHVHSINDSLSAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVASLFPNHSVLDVKNQWVSFITDSPKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGPNCPSLPARMAQPTNGKLVWFLDKPAASKLQSVQFCE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query267 2.2.26 [Sep-21-2011]
Q9LMX8268 Probable 6-phosphoglucono yes no 0.996 0.992 0.695 1e-106
Q6Z4H0280 Probable 6-phosphoglucono yes no 0.951 0.907 0.678 1e-101
A2YNH4280 Probable 6-phosphoglucono N/A no 0.951 0.907 0.678 1e-101
A2XI04296 Probable 6-phosphoglucono N/A no 0.951 0.858 0.673 1e-98
Q75IV7296 Probable 6-phosphoglucono yes no 0.951 0.858 0.673 1e-98
Q6Z9C3327 Probable 6-phosphoglucono no no 0.947 0.773 0.555 3e-76
A2YXS5327 Probable 6-phosphoglucono N/A no 0.947 0.773 0.555 3e-76
Q69NG5324 Probable 6-phosphoglucono no no 0.951 0.783 0.529 8e-74
A2Z3C4324 Probable 6-phosphoglucono N/A no 0.951 0.783 0.529 1e-73
Q84WW2325 Probable 6-phosphoglucono no no 0.955 0.784 0.521 4e-70
>sp|Q9LMX8|6PGL1_ARATH Probable 6-phosphogluconolactonase 1 OS=Arabidopsis thaliana GN=At1g13700 PE=2 SV=1 Back     alignment and function desciption
 Score =  384 bits (987), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 187/269 (69%), Positives = 220/269 (81%), Gaps = 3/269 (1%)

Query: 1   MAFSGVHRDRGELRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKL 60
           MA +  H+DRGE+R+HE++EELS +L DYIA++SEAS+KE G F I LSGGSLI  MGKL
Sbjct: 1   MALTWTHKDRGEIRVHENLEELSIDLVDYIAEISEASIKEHGAFCIVLSGGSLISFMGKL 60

Query: 61  CEAPYNKTVDWAKWYIFWADERVVAKNHSDSNYKLAKEGLLSKQVPIVPSHVHSINDSLS 120
            E PY+K VDWAKWY+FWADERVVAKNH DSNYKLAK+ LLSK V + P H+ SIND++S
Sbjct: 61  IEPPYDKIVDWAKWYVFWADERVVAKNHDDSNYKLAKDNLLSK-VNVFPRHICSINDTVS 119

Query: 121 AEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVASLFPNHSVLDVKNQ 180
           AEEAA EYEF IRQ+V++R V  SD SD P+FDLILLGMGSDGHVASLFPNH  L+VK+ 
Sbjct: 120 AEEAATEYEFAIRQMVRSRTVAASDNSDSPRFDLILLGMGSDGHVASLFPNHPALEVKDD 179

Query: 181 WVSFITDSPKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLG-PNCP-SLPA 238
           WV+F+TDS KPPPERITFTLPVINSA+ VVVV TGESKA A+HLAIDDL  P+   SLPA
Sbjct: 180 WVTFLTDSHKPPPERITFTLPVINSAANVVVVATGESKANAIHLAIDDLPLPDSSLSLPA 239

Query: 239 RMAQPTNGKLVWFLDKPAASKLQSVQFCE 267
           R+  P+NG L+WF+DK A SKL   +F E
Sbjct: 240 RLVHPSNGNLIWFMDKQAGSKLDRFKFSE 268
Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 1
>sp|Q6Z4H0|6PGL2_ORYSJ Probable 6-phosphogluconolactonase 2 OS=Oryza sativa subsp. japonica GN=Os07g0604000 PE=2 SV=1 Back     alignment and function description
>sp|A2YNH4|6PGL2_ORYSI Probable 6-phosphogluconolactonase 2 OS=Oryza sativa subsp. indica GN=OsI_025867 PE=3 SV=1 Back     alignment and function description
>sp|A2XI04|6PGL1_ORYSI Probable 6-phosphogluconolactonase 1 OS=Oryza sativa subsp. indica GN=OsI_011697 PE=3 SV=2 Back     alignment and function description
>sp|Q75IV7|6PGL1_ORYSJ Probable 6-phosphogluconolactonase 1 OS=Oryza sativa subsp. japonica GN=Os03g0416500 PE=2 SV=1 Back     alignment and function description
>sp|Q6Z9C3|6PGL3_ORYSJ Probable 6-phosphogluconolactonase 3, chloroplastic OS=Oryza sativa subsp. japonica GN=Os08g0547100 PE=2 SV=1 Back     alignment and function description
>sp|A2YXS5|6PGL3_ORYSI Probable 6-phosphogluconolactonase 3, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_30141 PE=3 SV=2 Back     alignment and function description
>sp|Q69NG5|6PGL4_ORYSJ Probable 6-phosphogluconolactonase 4, chloroplastic OS=Oryza sativa subsp. japonica GN=Os09g0529100 PE=2 SV=2 Back     alignment and function description
>sp|A2Z3C4|6PGL4_ORYSI Probable 6-phosphogluconolactonase 4, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_031067 PE=3 SV=2 Back     alignment and function description
>sp|Q84WW2|6PGL5_ARATH Probable 6-phosphogluconolactonase 5, chloroplastic OS=Arabidopsis thaliana GN=EMB2024 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query267
255541996266 6-phosphogluconolactonase, putative [Ric 0.996 1.0 0.850 1e-130
225423434266 PREDICTED: probable 6-phosphogluconolact 0.996 1.0 0.835 1e-127
224112096266 predicted protein [Populus trichocarpa] 0.996 1.0 0.827 1e-125
224098998266 predicted protein [Populus trichocarpa] 0.996 1.0 0.838 1e-124
449434714265 PREDICTED: probable 6-phosphogluconolact 0.992 1.0 0.816 1e-123
363807590261 uncharacterized protein LOC100809411 [Gl 0.947 0.969 0.842 1e-122
356499907261 PREDICTED: probable 6-phosphogluconolact 0.947 0.969 0.830 1e-120
388498944267 unknown [Lotus japonicus] 0.973 0.973 0.736 1e-110
297849772268 glucosamine/galactosamine-6-phosphate is 0.996 0.992 0.691 1e-105
357487655266 hypothetical protein MTR_5g045000 [Medic 0.973 0.977 0.716 1e-105
>gi|255541996|ref|XP_002512062.1| 6-phosphogluconolactonase, putative [Ricinus communis] gi|223549242|gb|EEF50731.1| 6-phosphogluconolactonase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 227/267 (85%), Positives = 246/267 (92%), Gaps = 1/267 (0%)

Query: 1   MAFSGVHRDRGELRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKL 60
           MA S VH+DRGELRIHE ++EL T+LADYIA+LSEASVKERGVFAIALSGGSLIGLMGKL
Sbjct: 1   MALSEVHKDRGELRIHECLDELGTDLADYIAELSEASVKERGVFAIALSGGSLIGLMGKL 60

Query: 61  CEAPYNKTVDWAKWYIFWADERVVAKNHSDSNYKLAKEGLLSKQVPIVPSHVHSINDSLS 120
           CEAPYNKTVDWAKWYIFWADERVVAKNH+DSNYKLAKEG+LSK VPIVPSHVHSINDS+S
Sbjct: 61  CEAPYNKTVDWAKWYIFWADERVVAKNHTDSNYKLAKEGILSK-VPIVPSHVHSINDSVS 119

Query: 121 AEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVASLFPNHSVLDVKNQ 180
           AEEAA+EYEF IRQLVKTR + VSDISDCPKFDLILLG+G DGHVASLFPNHSVLD  ++
Sbjct: 120 AEEAANEYEFVIRQLVKTRTINVSDISDCPKFDLILLGVGPDGHVASLFPNHSVLDANDE 179

Query: 181 WVSFITDSPKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGPNCPSLPARM 240
           WV++ITDSPKPPPERITFTLPVINSAS V V+V GESKAEAVHLAIDD+GP+CP+LPARM
Sbjct: 180 WVTYITDSPKPPPERITFTLPVINSASNVAVIVAGESKAEAVHLAIDDVGPDCPTLPARM 239

Query: 241 AQPTNGKLVWFLDKPAASKLQSVQFCE 267
             PT GKLVWFLDKPAASKL   QF E
Sbjct: 240 VHPTKGKLVWFLDKPAASKLDGSQFSE 266

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225423434|ref|XP_002264324.1| PREDICTED: probable 6-phosphogluconolactonase 1 isoform 1 [Vitis vinifera] gi|225423436|ref|XP_002264369.1| PREDICTED: probable 6-phosphogluconolactonase 1 isoform 2 [Vitis vinifera] gi|147774152|emb|CAN72406.1| hypothetical protein VITISV_038200 [Vitis vinifera] gi|297738105|emb|CBI27306.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224112096|ref|XP_002316080.1| predicted protein [Populus trichocarpa] gi|222865120|gb|EEF02251.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224098998|ref|XP_002311348.1| predicted protein [Populus trichocarpa] gi|222851168|gb|EEE88715.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449434714|ref|XP_004135141.1| PREDICTED: probable 6-phosphogluconolactonase 1-like isoform 1 [Cucumis sativus] gi|449434716|ref|XP_004135142.1| PREDICTED: probable 6-phosphogluconolactonase 1-like isoform 2 [Cucumis sativus] gi|449478345|ref|XP_004155291.1| PREDICTED: probable 6-phosphogluconolactonase 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|363807590|ref|NP_001242664.1| uncharacterized protein LOC100809411 [Glycine max] gi|255644495|gb|ACU22751.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356499907|ref|XP_003518777.1| PREDICTED: probable 6-phosphogluconolactonase 2-like [Glycine max] gi|356499909|ref|XP_003518778.1| PREDICTED: probable 6-phosphogluconolactonase 2-like [Glycine max] gi|356499911|ref|XP_003518779.1| PREDICTED: probable 6-phosphogluconolactonase 2-like [Glycine max] gi|356499913|ref|XP_003518780.1| PREDICTED: probable 6-phosphogluconolactonase 2-like [Glycine max] Back     alignment and taxonomy information
>gi|388498944|gb|AFK37538.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|297849772|ref|XP_002892767.1| glucosamine/galactosamine-6-phosphate isomerase family protein [Arabidopsis lyrata subsp. lyrata] gi|297338609|gb|EFH69026.1| glucosamine/galactosamine-6-phosphate isomerase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357487655|ref|XP_003614115.1| hypothetical protein MTR_5g045000 [Medicago truncatula] gi|355515450|gb|AES97073.1| hypothetical protein MTR_5g045000 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query267
TAIR|locus:2023842268 PGL1 "AT1G13700" [Arabidopsis 0.996 0.992 0.680 2.9e-96
TAIR|locus:2152906325 EMB2024 "AT5G24400" [Arabidops 0.955 0.784 0.521 4.1e-65
TAIR|locus:2082916259 PGL2 "AT3G49360" [Arabidopsis 0.898 0.926 0.476 1.3e-54
TAIR|locus:2152916252 PGL5 "6-phosphogluconolactonas 0.872 0.924 0.475 2.1e-52
TAIR|locus:2152911261 PGL4 "6-phosphogluconolactonas 0.940 0.961 0.440 2e-49
UNIPROTKB|F1S956262 PGLS "Uncharacterized protein" 0.906 0.923 0.405 5.2e-42
MGI|MGI:1913421257 Pgls "6-phosphogluconolactonas 0.895 0.929 0.396 8.4e-42
RGD|1307001257 Pgls "6-phosphogluconolactonas 0.902 0.937 0.397 3.6e-41
UNIPROTKB|F1MM83258 PGLS "6-phosphogluconolactonas 0.898 0.930 0.392 4.6e-41
UNIPROTKB|Q2TBQ8258 PGLS "6-phosphogluconolactonas 0.898 0.930 0.392 4.6e-41
TAIR|locus:2023842 PGL1 "AT1G13700" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 957 (341.9 bits), Expect = 2.9e-96, P = 2.9e-96
 Identities = 183/269 (68%), Positives = 216/269 (80%)

Query:     1 MAFSGVHRDRGELRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKL 60
             MA +  H+DRGE+R+HE++EELS +L DYIA++SEAS+KE G F I LSGGSLI  MGKL
Sbjct:     1 MALTWTHKDRGEIRVHENLEELSIDLVDYIAEISEASIKEHGAFCIVLSGGSLISFMGKL 60

Query:    61 CEAPYNKTVDWAKWYIFWADERVVAKNHSDSNYKLAKEGLLSKQVPIVPSHVHSINDSLS 120
              E PY+K VDWAKWY+FWADERVVAKNH DSNYKLAK+ LLSK V + P H+ SIND++S
Sbjct:    61 IEPPYDKIVDWAKWYVFWADERVVAKNHDDSNYKLAKDNLLSK-VNVFPRHICSINDTVS 119

Query:   121 AEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVASLFPNHSVLDVKNQ 180
             AEEAA EYEF IRQ+V++R V  SD SD P+FDLILLGMGSDGHVASLFPNH  L+VK+ 
Sbjct:   120 AEEAATEYEFAIRQMVRSRTVAASDNSDSPRFDLILLGMGSDGHVASLFPNHPALEVKDD 179

Query:   181 WVSFITDSPKPPPERITFTLPVINSASIXXXXXTGESKAEAVHLAIDDLG-PNCP-SLPA 238
             WV+F+TDS KPPPERITFTLPVINSA+      TGESKA A+HLAIDDL  P+   SLPA
Sbjct:   180 WVTFLTDSHKPPPERITFTLPVINSAANVVVVATGESKANAIHLAIDDLPLPDSSLSLPA 239

Query:   239 RMAQPTNGKLVWFLDKPAASKLQSVQFCE 267
             R+  P+NG L+WF+DK A SKL   +F E
Sbjct:   240 RLVHPSNGNLIWFMDKQAGSKLDRFKFSE 268
GO:0003824 "catalytic activity" evidence=ISS
GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS
GO:0006098 "pentose-phosphate shunt" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM
GO:0017057 "6-phosphogluconolactonase activity" evidence=IEA
TAIR|locus:2152906 EMB2024 "AT5G24400" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082916 PGL2 "AT3G49360" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2152916 PGL5 "6-phosphogluconolactonase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2152911 PGL4 "6-phosphogluconolactonase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1S956 PGLS "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1913421 Pgls "6-phosphogluconolactonase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1307001 Pgls "6-phosphogluconolactonase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1MM83 PGLS "6-phosphogluconolactonase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q2TBQ8 PGLS "6-phosphogluconolactonase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LMX86PGL1_ARATH3, ., 1, ., 1, ., 3, 10.69510.99620.9925yesno
Q497006PGL_MYCLE3, ., 1, ., 1, ., 3, 10.37080.80520.8704yesno
A2YNH46PGL2_ORYSI3, ., 1, ., 1, ., 3, 10.67820.95130.9071N/Ano
Q75IV76PGL1_ORYSJ3, ., 1, ., 1, ., 3, 10.67310.95130.8581yesno
P38858SOL3_YEAST3, ., 1, ., 1, ., 3, 10.32420.84260.9036yesno
Q9XAB76PGL_STRCO3, ., 1, ., 1, ., 3, 10.31150.89130.9118yesno
O744556PGL_SCHPO3, ., 1, ., 1, ., 3, 10.38840.85010.8832yesno
Q6Z4H06PGL2_ORYSJ3, ., 1, ., 1, ., 3, 10.67820.95130.9071yesno
O182296PGL_CAEEL3, ., 1, ., 1, ., 3, 10.31490.85010.8438yesno
P859716PGL_RAT3, ., 1, ., 1, ., 3, 10.39920.90630.9416yesno
O953366PGL_HUMAN3, ., 1, ., 1, ., 3, 10.39530.91010.9418yesno
Q9CQ606PGL_MOUSE3, ., 1, ., 1, ., 3, 10.39840.89880.9338yesno
Q9VZ646PGL_DROME3, ., 1, ., 1, ., 3, 10.35650.88380.9711yesno
A2XI046PGL1_ORYSI3, ., 1, ., 1, ., 3, 10.67310.95130.8581N/Ano
Q2TBQ86PGL_BOVIN3, ., 1, ., 1, ., 3, 10.39060.90260.9341yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.10.766
3rd Layer3.1.1.310.824

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00030020001
SubName- Full=Putative uncharacterized protein (Chromosome chr1 scaffold_5, whole genome shotgun sequence); (266 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00002492001
SubName- Full=Chromosome chr2 scaffold_132, whole genome shotgun sequence; (306 aa)
•  • •• 0.987
GSVIVG00029105001
RecName- Full=Glucose-6-phosphate 1-dehydrogenase; EC=1.1.1.49; (518 aa)
• •  •• 0.987
GSVIVG00020574001
RecName- Full=Glucose-6-phosphate 1-dehydrogenase; EC=1.1.1.49; (516 aa)
• •  •• 0.987
GSVIVG00006988001
RecName- Full=Glucose-6-phosphate 1-dehydrogenase; EC=1.1.1.49; (527 aa)
• •  •• 0.987
GSVIVG00021207001
SubName- Full=Chromosome chr1 scaffold_22, whole genome shotgun sequence; (280 aa)
•  • •• 0.984
GSVIVG00029094001
RecName- Full=Glucose-6-phosphate 1-dehydrogenase; EC=1.1.1.49; (582 aa)
• •  •• 0.982
GSVIVG00022550001
RecName- Full=Glucose-6-phosphate 1-dehydrogenase; EC=1.1.1.49; (534 aa)
• •  •• 0.977
GSVIVG00014074001
SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (174 aa)
•    •• 0.951
GSVIVG00006209001
SubName- Full=Chromosome chr1 scaffold_166, whole genome shotgun sequence; (441 aa)
•     • 0.755
GSVIVG00020486001
SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (564 aa)
•    •• 0.635

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query267
PLN02360268 PLN02360, PLN02360, probable 6-phosphogluconolacto 0.0
cd01400219 cd01400, 6PGL, 6PGL: 6-Phosphogluconolactonase (6P 3e-94
pfam01182191 pfam01182, Glucosamine_iso, Glucosamine-6-phosphat 3e-81
TIGR01198233 TIGR01198, pgl, 6-phosphogluconolactonase 6e-74
COG0363238 COG0363, NagB, 6-phosphogluconolactonase/Glucosami 2e-65
cd01399232 cd01399, GlcN6P_deaminase, GlcN6P_deaminase: Gluco 3e-25
PRK00443261 PRK00443, nagB, glucosamine-6-phosphate deaminase; 2e-18
TIGR00502259 TIGR00502, nagB, glucosamine-6-phosphate isomerase 2e-11
PTZ00285253 PTZ00285, PTZ00285, glucosamine-6-phosphate isomer 2e-11
PRK02122 652 PRK02122, PRK02122, glucosamine-6-phosphate deamin 4e-09
PRK12358239 PRK12358, PRK12358, putative 6-phosphogluconolacto 1e-05
cd00458169 cd00458, SugarP_isomerase, SugarP_isomerase: Sugar 2e-05
PRK09762232 PRK09762, PRK09762, galactosamine-6-phosphate isom 5e-05
>gnl|CDD|166001 PLN02360, PLN02360, probable 6-phosphogluconolactonase Back     alignment and domain information 
 Score =  498 bits (1284), Expect = 0.0
 Identities = 220/269 (81%), Positives = 243/269 (90%), Gaps = 3/269 (1%)

Query: 1   MAFSGVHRDRGELRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKL 60
           MA S VH+DRGE+R+HE+++ELST+LA+YIA+LSEASVKERGVFAIALSGGSLI  MGKL
Sbjct: 1   MAHSYVHKDRGEIRVHENLDELSTDLAEYIAELSEASVKERGVFAIALSGGSLISFMGKL 60

Query: 61  CEAPYNKTVDWAKWYIFWADERVVAKNHSDSNYKLAKEGLLSKQVPIVPSHVHSINDSLS 120
           CEAPYNKTVDWAKWYIFWADERVVAKNH+DSNYKLAK+GLLSK VP+VPSHV+SIND+++
Sbjct: 61  CEAPYNKTVDWAKWYIFWADERVVAKNHADSNYKLAKDGLLSK-VPVVPSHVYSINDTVT 119

Query: 121 AEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVASLFPNHSVLDVKNQ 180
           AEEAA +YEF IRQLVKTR + VSDISDCPKFDLILLGMGSDGHVASLFPNH  L+ K+ 
Sbjct: 120 AEEAATDYEFAIRQLVKTRTIGVSDISDCPKFDLILLGMGSDGHVASLFPNHPALEEKDD 179

Query: 181 WVSFITDSPKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDL--GPNCPSLPA 238
           WV+FITDSPKPPPERITFTLPVINSAS V VV TGESKA AVHLAIDD+  GP+ PSLPA
Sbjct: 180 WVTFITDSPKPPPERITFTLPVINSASNVAVVATGESKANAVHLAIDDVTEGPDAPSLPA 239

Query: 239 RMAQPTNGKLVWFLDKPAASKLQSVQFCE 267
           RM QPT GKLVWFLDKPAASKL   QF E
Sbjct: 240 RMVQPTKGKLVWFLDKPAASKLDGFQFSE 268

Length = 268
>gnl|CDD|238694 cd01400, 6PGL, 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate Back     alignment and domain information
>gnl|CDD|216349 pfam01182, Glucosamine_iso, Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase Back     alignment and domain information
>gnl|CDD|233308 TIGR01198, pgl, 6-phosphogluconolactonase Back     alignment and domain information
>gnl|CDD|223440 COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|238693 cd01399, GlcN6P_deaminase, GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium Back     alignment and domain information
>gnl|CDD|179028 PRK00443, nagB, glucosamine-6-phosphate deaminase; Provisional Back     alignment and domain information
>gnl|CDD|129593 TIGR00502, nagB, glucosamine-6-phosphate isomerase Back     alignment and domain information
>gnl|CDD|140308 PTZ00285, PTZ00285, glucosamine-6-phosphate isomerase; Provisional Back     alignment and domain information
>gnl|CDD|235005 PRK02122, PRK02122, glucosamine-6-phosphate deaminase-like protein; Validated Back     alignment and domain information
>gnl|CDD|183470 PRK12358, PRK12358, putative 6-phosphogluconolactonase; Provisional Back     alignment and domain information
>gnl|CDD|238258 cd00458, SugarP_isomerase, SugarP_isomerase: Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL) Back     alignment and domain information
>gnl|CDD|182064 PRK09762, PRK09762, galactosamine-6-phosphate isomerase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 267
PLN02360268 probable 6-phosphogluconolactonase 100.0
TIGR01198233 pgl 6-phosphogluconolactonase. This enzyme of the 100.0
PTZ00285253 glucosamine-6-phosphate isomerase; Provisional 100.0
KOG3147252 consensus 6-phosphogluconolactonase - like protein 100.0
COG0363238 NagB 6-phosphogluconolactonase/Glucosamine-6-phosp 100.0
cd01400219 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfam 100.0
TIGR00502259 nagB glucosamine-6-phosphate isomerase. The set of 100.0
PRK09762232 galactosamine-6-phosphate isomerase; Provisional 100.0
PRK12358239 putative 6-phosphogluconolactonase; Provisional 100.0
PRK02122 652 glucosamine-6-phosphate deaminase-like protein; Va 100.0
PF01182199 Glucosamine_iso: Glucosamine-6-phosphate isomerase 100.0
PRK00443261 nagB glucosamine-6-phosphate deaminase; Provisiona 100.0
cd01399232 GlcN6P_deaminase GlcN6P_deaminase: Glucosamine-6-p 100.0
KOG3148273 consensus Glucosamine-6-phosphate isomerase [Carbo 100.0
cd00458169 SugarP_isomerase SugarP_isomerase: Sugar Phosphate 100.0
COG2390321 DeoR Transcriptional regulator, contains sigma fac 98.11
PF04198255 Sugar-bind: Putative sugar-binding domain; InterPr 97.76
PRK15418318 transcriptional regulator LsrR; Provisional 97.19
COG0037298 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle 83.1
>PLN02360 probable 6-phosphogluconolactonase Back     alignment and domain information 
Probab=100.00  E-value=8.3e-67  Score=464.64  Aligned_cols=263  Identities=82%  Similarity=1.266  Sum_probs=231.2

Q ss_pred             CCCCCCCCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCceeEEeec
Q 024468            1 MAFSGVHRDRGELRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWAD   80 (267)
Q Consensus         1 ~~~~~~~~~~~~~~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~D   80 (267)
                      ||+|-|+...|++++|+|++++++.+|+.|.+.+++++++++.+.|+|||||+|..+++|.....+.++||+||+|||+|
T Consensus         1 ~~~~~~~~~~~~l~i~~~~~el~~~~a~~i~~~~~~a~~~~~~~~lalsGGS~~~~~~~L~~~~~~~~idW~~v~~f~~D   80 (268)
T PLN02360          1 MAHSYVHKDRGEIRVHENLDELSTDLAEYIAELSEASVKERGVFAIALSGGSLISFMGKLCEAPYNKTVDWAKWYIFWAD   80 (268)
T ss_pred             CCccccccCCceEEEeCCHHHHHHHHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHhccccccCCCCceEEEEeee
Confidence            89999999999999999999999999999999999999999999999999998876667765545568999999999999


Q ss_pred             eeccCCCChhhHHHHHHHHhcccCCCCCCCCeEeCCCCCCHHHHHHHHHHHHHHhhhhccccccCCCCCCcceEEEeccC
Q 024468           81 ERVVAKNHSDSNYKLAKEGLLSKQVPIVPSHVHSINDSLSAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMG  160 (267)
Q Consensus        81 Er~vp~~~~~Sn~~~l~~~ll~~~~~i~~~~~~~~~~~~d~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G  160 (267)
                      |||||.+|++||++++|++||+++ +++++|+|++++..+++++|++|+++|+++++.........+..|+||+++||||
T Consensus        81 ER~Vp~~~~~SN~~~~r~~Ll~~~-~i~~~~i~~~~~~~~~~~~a~~ye~~l~~~~~~~~~~~~~~~~~p~fDlvlLGmG  159 (268)
T PLN02360         81 ERVVAKNHADSNYKLAKDGLLSKV-PVVPSHVYSINDTVTAEEAATDYEFAIRQLVKTRTIGVSDISDCPKFDLILLGMG  159 (268)
T ss_pred             cccCCCCCcchHHHHHHHHhhccC-CCChhhcccCCCCCCHHHHHHHHHHHHHHHhhccccccccccCCCcccEEEEccC
Confidence            999999999999999999999999 9999999999988789999999999998864321110001112468999999999


Q ss_pred             CCCceeccCCCCCccccccceEEeecCCCCCCCCeEEeCHHHHHhccceeEEEeCccHHHHHHHHHh----CCCCCCccc
Q 024468          161 SDGHVASLFPNHSVLDVKNQWVSFITDSPKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAID----DLGPNCPSL  236 (267)
Q Consensus       161 ~DGHiAslfP~~~~~~~~~~~v~~~~~~~~~p~~riTl~~~~i~~A~~iill~~G~~K~~~l~~~l~----~~~~~~~~~  236 (267)
                      +||||||||||++.+.+...+++.+.+++++|++|||||++.|++||+|+|+++|++|++++++++.    +++  +.++
T Consensus       160 ~DGHtASlFPg~~~l~~~~~~v~~~~~~~~~p~~RITlt~~~i~~A~~i~llv~G~~Ka~al~~~l~~~~~~~~--~~~~  237 (268)
T PLN02360        160 SDGHVASLFPNHPALEEKDDWVTFITDSPKPPPERITFTLPVINSASNVAVVATGESKANAVHLAIDDVTEGPD--APSL  237 (268)
T ss_pred             CCCceeccCCCCchhhhccceEEeecCCCCCCCceEEEcHHHHhcCCeEEEEEeCccHHHHHHHHHhhccCCCC--cccC
Confidence            9999999999998776665677666677899999999999999999999999999999999999995    443  5789


Q ss_pred             cccccccCC-CeEEEEecHHHHhhccccccCC
Q 024468          237 PARMAQPTN-GKLVWFLDKPAASKLQSVQFCE  267 (267)
Q Consensus       237 Pas~l~~~~-~~~~~~~D~~Aa~~l~~~~~~~  267 (267)
                      |++.|+. | ++++|++|++|++.|+++|+.|
T Consensus       238 Pas~l~~-~~~~~~w~~D~~Aa~~l~~~~~~~  268 (268)
T PLN02360        238 PARMVQP-TKGKLVWFLDKPAASKLDGFQFSE  268 (268)
T ss_pred             ChhhhcC-CCCcEEEEECHHHHhhCcccccCC
Confidence            9999994 6 4999999999999999999864

>TIGR01198 pgl 6-phosphogluconolactonase Back     alignment and domain information
>PTZ00285 glucosamine-6-phosphate isomerase; Provisional Back     alignment and domain information
>KOG3147 consensus 6-phosphogluconolactonase - like protein [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG0363 NagB 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd01400 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate Back     alignment and domain information
>TIGR00502 nagB glucosamine-6-phosphate isomerase Back     alignment and domain information
>PRK09762 galactosamine-6-phosphate isomerase; Provisional Back     alignment and domain information
>PRK12358 putative 6-phosphogluconolactonase; Provisional Back     alignment and domain information
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated Back     alignment and domain information
>PF01182 Glucosamine_iso: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; InterPro: IPR006148 This domain is characteristic of the enzymes 6-phosphogluconolactonase (3 Back     alignment and domain information
>PRK00443 nagB glucosamine-6-phosphate deaminase; Provisional Back     alignment and domain information
>cd01399 GlcN6P_deaminase GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium Back     alignment and domain information
>KOG3148 consensus Glucosamine-6-phosphate isomerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd00458 SugarP_isomerase SugarP_isomerase: Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL) Back     alignment and domain information
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription] Back     alignment and domain information
>PF04198 Sugar-bind: Putative sugar-binding domain; InterPro: IPR007324 This probable domain is found in bacterial transcriptional regulators such as DeoR and SorC Back     alignment and domain information
>PRK15418 transcriptional regulator LsrR; Provisional Back     alignment and domain information
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query267
3tx2_A251 Structure Of A Probable 6-Phosphogluconolactonase F 3e-25
3ico_A268 Crystal Structure Of 6-Phosphogluconolactonase From 5e-25
3oc6_A248 Crystal Structure Of 6-Phosphogluconolactonase From 5e-24
1y89_A238 Crystal Structure Of Devb Protein Length = 238 5e-19
3e7f_A265 Crystal Structure Of 6-Phosphogluconolactonase From 8e-17
2j0e_A266 Three Dimensional Structure And Catalytic Mechanism 9e-17
1vl1_A232 Crystal Structure Of 6-Phosphogluconolactonase (Tm1 1e-15
1pbt_A244 The Crystal Structure Of Tm1154, Oxidoreductase, So 7e-15
3lhi_A232 Crystal Structure Of Putative 6- Phosphogluconolact 2e-14
3lwd_A226 Crystal Structure Of Putative 6-Phosphogluconolacto 7e-11
3nwp_A233 Crystal Structure Of A 6-Phosphogluconolactonase (S 1e-10
3css_A267 Crystal Structure Of 6-Phosphogluconolactonase From 4e-10
3ch7_A266 Crystal Structure Of 6-Phosphogluconolactonase From 4e-10
3e15_A312 6-Phosphogluconolactonase From Plasmodium Vivax Len 4e-06
>pdb|3TX2|A Chain A, Structure Of A Probable 6-Phosphogluconolactonase From Mycobacterium Abscessus Length = 251 Back     alignment and structure 
Iteration: 1

 Score =  111 bits (278), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/251 (33%), Positives = 128/251 (50%), Gaps = 19/251 (7%)
Query: 16  HESVEELSTNLADYIADLSEASVKERGVFAIALSGGSL-IGLMGKLCEAPYNKTVDWAKW 74
           +   + L T   D +A     ++ ERG   I L+GG   I L+  L +      +DW   
Sbjct: 13  YADTDALVTAAGDRLASAITGALAERGKAMIVLTGGGTGIALLKHLRDVASG--LDWTNV 70
Query: 75  YIFWADERVVAKNHSDSNYKLAKEGLLSKQVPIVPSHVHSINDSLSAEEAADEY--EFDI 132
           ++FW D+R V K   + N   A E LL + V     ++H++ +S S      EY  + D 
Sbjct: 71  HVFWGDDRYVPKTDPERNAWQAWEALL-EHVNFPLRNMHAMPNSES------EYGTDLDA 123
Query: 133 RQLVKTRMVCVS--DISDCPKFDLILLGMGSDGHVASLFPNHSVLDVKNQWVSFITDSPK 190
             L   +++  +     DCP FD+ LLGMG +GH+ SLFP+   +    + V  + DSPK
Sbjct: 124 AALAYEQLLAANAEPGQDCPAFDVHLLGMGGEGHINSLFPHTDAVKETQRLVVAVPDSPK 183
Query: 191 PPPERITFTLPVINSASIXXXXXTGESKAEAVHLAIDDLGP-NCPSLPARMAQPTNGKLV 249
           PPP+RIT TLP I  +       +GE+KA+AV  A+    P + P+  A+  + T    V
Sbjct: 184 PPPQRITLTLPAIQRSREVWLVVSGEAKADAVAAAVGGADPVDVPAAGAKGIERT----V 239
Query: 250 WFLDKPAASKL 260
           W LD+ AAS+L
Sbjct: 240 WLLDEAAASQL 250
>pdb|3ICO|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase From Mycobacterium Tuberculosis Length = 268 Back     alignment and structure
>pdb|3OC6|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase From Mycobacterium Smegmatis, Apo Form Length = 248 Back     alignment and structure
>pdb|1Y89|A Chain A, Crystal Structure Of Devb Protein Length = 238 Back     alignment and structure
>pdb|3E7F|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase From Trypanosoma Brucei Complexed With 6-Phosphogluconic Acid Length = 265 Back     alignment and structure
>pdb|2J0E|A Chain A, Three Dimensional Structure And Catalytic Mechanism Of 6- Phosphogluconolactonase From Trypanosoma Brucei Length = 266 Back     alignment and structure
>pdb|1VL1|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase (Tm1154) From Thermotoga Maritima At 1.70a Resolution Length = 232 Back     alignment and structure
>pdb|1PBT|A Chain A, The Crystal Structure Of Tm1154, Oxidoreductase, SolDEVB Family From Thermotoga Maritima Length = 244 Back     alignment and structure
>pdb|3LHI|A Chain A, Crystal Structure Of Putative 6- Phosphogluconolactonase(Yp_207848.1) From Neisseria Gonorrhoeae Fa 1090 At 1.33 A Resolution Length = 232 Back     alignment and structure
>pdb|3LWD|A Chain A, Crystal Structure Of Putative 6-Phosphogluconolactonase (Yp_574786.1) From Chromohalobacter Salexigens Dsm 3043 At 1.88 A Resolution Length = 226 Back     alignment and structure
>pdb|3NWP|A Chain A, Crystal Structure Of A 6-Phosphogluconolactonase (Sbal_2240) From Shewanella Baltica Os155 At 1.40 A Resolution Length = 233 Back     alignment and structure
>pdb|3CSS|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase From Leishmania Guyanensis Length = 267 Back     alignment and structure
>pdb|3CH7|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase From Leishmania Braziliensis Length = 266 Back     alignment and structure
>pdb|3E15|A Chain A, 6-Phosphogluconolactonase From Plasmodium Vivax Length = 312 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query267
3oc6_A248 6-phosphogluconolactonase; ssgcid, structural geno 1e-102
3tx2_A251 Probable 6-phosphogluconolactonase; ssgcid, hydrol 1e-101
3ico_A268 6PGL, 6-phosphogluconolactonase; ssgcid, infectiou 1e-100
1y89_A238 DEVB protein; structural genomics, protein structu 1e-100
3eb9_A266 6-phosphogluconolactonase; catalytic mechanism, pe 2e-95
1vl1_A232 6PGL, 6-phosphogluconolactonase; TM1154, structura 5e-95
3lhi_A232 Putative 6-phosphogluconolactonase; structural gen 9e-88
3css_A267 6-phosphogluconolactonase; structural genomics, me 1e-86
3nwp_A233 6-phosphogluconolactonase; structural genomics, jo 4e-85
3lwd_A226 6-phosphogluconolactonase; structural genomics, JO 9e-85
3e15_A312 Glucose-6-phosphate 1-dehydrogenase; 6-phosphogluc 5e-82
1fs5_A266 Glucosamine-6-phosphate deaminase; allosteric enzy 2e-24
1ne7_A289 Glucosamine-6-phosphate isomerase; V-type like all 8e-24
3hn6_A289 Glucosamine-6-phosphate deaminase; niaid, ssgcid, 2e-23
2bkx_A242 Glucosamine-6-phosphate deaminase; hydrolase, subs 1e-22
2ri0_A234 Glucosamine-6-phosphate deaminase; carbohydrate me 4e-19
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-05
>3oc6_A 6-phosphogluconolactonase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, carboxylic ester hydrolase; 2.10A {Mycobacterium smegmatis} Length = 248 Back     alignment and structure
 Score =  295 bits (758), Expect = e-102
 Identities = 90/255 (35%), Positives = 133/255 (52%), Gaps = 21/255 (8%)

Query: 12  ELRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGSL-IGLMGKLCEAPYNKTVD 70
            +  H     L     D + D   +++ ERG   I L+GG   IGL+ ++ E      +D
Sbjct: 9   VIERHADTAALVAAAGDRLVDAISSAIGERGQATIVLTGGGTGIGLLKRVRERS--GEID 66

Query: 71  WAKWYIFWADERVVAKNHSDSNYKLAKEGLLSKQVPIVPSHVHSINDSL-----SAEEAA 125
           W+K +I+W DER V ++  + N K A+E LL   + I P +VH++  S        E AA
Sbjct: 67  WSKVHIYWGDERFVPQDDDERNDKQAREALLDH-IGIPPVNVHAMAASDGEFGDDLEAAA 125

Query: 126 DEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVASLFPNHSVLDVKNQWVSFI 185
             Y   +              S  P FD+ LLGMG +GHV SLFP+   +    + V  +
Sbjct: 126 AGYAQLLSANFD---------SSVPGFDVHLLGMGGEGHVNSLFPDTDAVRETERLVVGV 176

Query: 186 TDSPKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGPNCPSLPARMAQPTN 245
           +DSPKPPP RIT TLP + ++  V +VV+GE+KA+AV  A+   G +   +PA  A    
Sbjct: 177 SDSPKPPPRRITLTLPAVQNSREVWLVVSGEAKADAVAAAVG--GADPVDIPAAGAVGR- 233

Query: 246 GKLVWFLDKPAASKL 260
            + VW +D+ AA+KL
Sbjct: 234 ERTVWLVDEAAAAKL 248
>3tx2_A Probable 6-phosphogluconolactonase; ssgcid, hydrolase; 1.50A {Mycobacterium abscessus} Length = 251 Back     alignment and structure
>3ico_A 6PGL, 6-phosphogluconolactonase; ssgcid, infectious disease, niaid, hydrolase, structural genomics; 2.15A {Mycobacterium tuberculosis} Length = 268 Back     alignment and structure
>1y89_A DEVB protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; HET: 2PE; 2.00A {Vibrio cholerae o1 biovar eltor str} Length = 238 Back     alignment and structure
>3eb9_A 6-phosphogluconolactonase; catalytic mechanism, pentose phosphate pathway, hydrolase, zinc binding site; HET: FLC; 2.00A {Trypanosoma brucei} PDB: 2j0e_A* 3e7f_A* Length = 266 Back     alignment and structure
>1vl1_A 6PGL, 6-phosphogluconolactonase; TM1154, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO hydrolase; HET: CIT; 1.55A {Thermotoga maritima} SCOP: c.124.1.1 PDB: 1pbt_A Length = 232 Back     alignment and structure
>3lhi_A Putative 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.33A {Neisseria gonorrhoeae} Length = 232 Back     alignment and structure
>3css_A 6-phosphogluconolactonase; structural genomics, medical structural genomics of pathogen protozoa consortium, SGPP, leish hydrolase; 1.70A {Leishmania braziliensis} PDB: 3ch7_A Length = 267 Back     alignment and structure
>3nwp_A 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, hydrolase; HET: MSE P6G PG4; 1.40A {Shewanella baltica} Length = 233 Back     alignment and structure
>3lwd_A 6-phosphogluconolactonase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; 1.75A {Chromohalobacter salexigens} Length = 226 Back     alignment and structure
>3e15_A Glucose-6-phosphate 1-dehydrogenase; 6-phosphogluconolactonase, malaria, carbohydrate metabolism, glucose metabolism, NADP, oxidoreductase,; HET: MSE; 2.00A {Plasmodium vivax} Length = 312 Back     alignment and structure
>1fs5_A Glucosamine-6-phosphate deaminase; allosteric enzyme, entropic effects, aldose-ketose isomerase multiple conformers, isomerase; HET: 16G TLA; 1.73A {Escherichia coli} SCOP: c.124.1.1 PDB: 1cd5_A 1fqo_A* 1frz_A* 1dea_A* 1fs6_A 1fsf_A 1hor_A* 1hot_A* 2wu1_A* 1jt9_A Length = 266 Back     alignment and structure
>1ne7_A Glucosamine-6-phosphate isomerase; V-type like allosteric enzyme, conformational disorder, conformational differences, hydrolase; HET: GLC 16G AGP; 1.75A {Homo sapiens} SCOP: c.124.1.1 Length = 289 Back     alignment and structure
>3hn6_A Glucosamine-6-phosphate deaminase; niaid, ssgcid, decode, UW, SBRI, infectious disease, LYME DI non-hodgkin lymphomas, neuroborreliosis; 2.20A {Borrelia burgdorferi} Length = 289 Back     alignment and structure
>2bkx_A Glucosamine-6-phosphate deaminase; hydrolase, substrate inhibition, fructose-6-phosphate; HET: F6R; 1.4A {Bacillus subtilis} PDB: 2bkv_A* Length = 242 Back     alignment and structure
>2ri0_A Glucosamine-6-phosphate deaminase; carbohydrate metabolism,; HET: BTB; 1.60A {Streptococcus mutans} PDB: 2ri1_A* Length = 234 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query267
3ico_A268 6PGL, 6-phosphogluconolactonase; ssgcid, infectiou 100.0
3tx2_A251 Probable 6-phosphogluconolactonase; ssgcid, hydrol 100.0
3oc6_A248 6-phosphogluconolactonase; ssgcid, structural geno 100.0
3eb9_A266 6-phosphogluconolactonase; catalytic mechanism, pe 100.0
3hn6_A289 Glucosamine-6-phosphate deaminase; niaid, ssgcid, 100.0
3css_A267 6-phosphogluconolactonase; structural genomics, me 100.0
3lwd_A226 6-phosphogluconolactonase; structural genomics, JO 100.0
3nwp_A233 6-phosphogluconolactonase; structural genomics, jo 100.0
1y89_A238 DEVB protein; structural genomics, protein structu 100.0
3lhi_A232 Putative 6-phosphogluconolactonase; structural gen 100.0
3e15_A312 Glucose-6-phosphate 1-dehydrogenase; 6-phosphogluc 100.0
1vl1_A232 6PGL, 6-phosphogluconolactonase; TM1154, structura 100.0
1ne7_A289 Glucosamine-6-phosphate isomerase; V-type like all 100.0
2bkx_A242 Glucosamine-6-phosphate deaminase; hydrolase, subs 100.0
1fs5_A266 Glucosamine-6-phosphate deaminase; allosteric enzy 100.0
2ri0_A234 Glucosamine-6-phosphate deaminase; carbohydrate me 100.0
2okg_A255 Central glycolytic gene regulator; alpha/beta/alph 99.89
2r5f_A264 Transcriptional regulator, putative; transcription 99.88
2gnp_A266 Transcriptional regulator; structural genomics, MC 99.85
2o0m_A345 Transcriptional regulator, SORC family; structural 99.81
2w48_A315 Sorbitol operon regulator; SORC, activator, repres 99.81
3nze_A267 Putative transcriptional regulator, sugar-binding; 99.58
3efb_A266 Probable SOR-operon regulator; alpha-beta-alpha sa 99.32
3kv1_A267 Transcriptional repressor; alpha-beta structure, s 99.25
>3ico_A 6PGL, 6-phosphogluconolactonase; ssgcid, infectious disease, niaid, hydrolase, structural genomics; 2.15A {Mycobacterium tuberculosis} Back     alignment and structure
Probab=100.00  E-value=2.4e-67  Score=466.53  Aligned_cols=242  Identities=33%  Similarity=0.511  Sum_probs=220.0

Q ss_pred             CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCceeEEeeceeccCCC
Q 024468            8 RDRGELRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKN   87 (267)
Q Consensus         8 ~~~~~~~i~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~vp~~   87 (267)
                      +++|++++|+|++++++++|+.|++.++++++++++++|+||||+||..+|+.|.... .++||+||++||+||||||.+
T Consensus        21 ~~~m~i~v~~~~~~l~~~~A~~i~~~i~~ai~~~~~~~l~LsgGstP~~~y~~L~~~~-~~idw~~v~~f~~DEr~vp~~   99 (268)
T 3ico_A           21 SMSSSIEIFPDSDILVAAAGKRLVGAIGAAVAARGQALIVLTGGGNGIALLRYLSAQA-QQIEWSKVHLFWGDERYVPED   99 (268)
T ss_dssp             ---CEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSCEEEEECCSHHHHHHHHHHHHHG-GGSCGGGEEEEESEEECSCTT
T ss_pred             ccccceEecCCcchhhhhhcchhhhHhHHHHHhcCceEEEEecCCchhHHHHHHHHHh-hhhhheeeEEeecccccCCCC
Confidence            4789999999999999999999999999999999999999999999999997665422 579999999999999999999


Q ss_pred             ChhhHHHHHHHHhcccCCCCCCCCeEeCCCC-----CCHHHHHHHHHHHHHHhhhhccccccCCCCCCcceEEEeccCCC
Q 024468           88 HSDSNYKLAKEGLLSKQVPIVPSHVHSINDS-----LSAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSD  162 (267)
Q Consensus        88 ~~~Sn~~~l~~~ll~~~~~i~~~~~~~~~~~-----~d~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~D  162 (267)
                      |++||+++|+++||+++ +++++|+|++++.     .+++++|++|++.|++.++.+       ++.|+||+++||||+|
T Consensus       100 ~~~Sn~~~~~~~Ll~~v-~i~~~~i~~~~~~~~~~~~~~~~~a~~Ye~~i~~~~~~~-------~~~p~~Dl~lLGmG~D  171 (268)
T 3ico_A          100 DDERNLKQARRALLNHV-DIPSNQVHPMAASDGDFGGDLDAAALAYEQVLAASAAPG-------DPAPNFDVHLLGMGPE  171 (268)
T ss_dssp             CTTCHHHHHHHHTGGGS-CCCGGGBCCCCCTTSTTTTCHHHHHHHHHHHHHHHSSTT-------CSSCCCSEEEECCCTT
T ss_pred             cchhHHHHHHHHHHhcc-CCcccccccccccCCCcccchhHHHHHHHHHHhhccCCC-------CCCCCcceEEeccCCc
Confidence            99999999999999999 9999999999875     589999999999999875321       1246899999999999


Q ss_pred             CceeccCCCCCccccccceEEeecCCCCCCCCeEEeCHHHHHhccceeEEEeCccHHHHHHHHHhCCCCCCccccccccc
Q 024468          163 GHVASLFPNHSVLDVKNQWVSFITDSPKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGPNCPSLPARMAQ  242 (267)
Q Consensus       163 GHiAslfP~~~~~~~~~~~v~~~~~~~~~p~~riTl~~~~i~~A~~iill~~G~~K~~~l~~~l~~~~~~~~~~Pas~l~  242 (267)
                      ||||||||+++.+.+++++++.+.+++++|++|||||+++|++||+|+|+++|++|++++++++++++  +.++|+|+|+
T Consensus       172 GH~as~fPg~~~~~~t~~~vv~~~~~~~~P~~rITlt~~~I~~Ar~i~ll~~G~~Ka~av~~~l~g~~--~~~~Pas~l~  249 (268)
T 3ico_A          172 GHINSLFPHSPAVLESTRMVVAVDDSPKPPPRRITLTLPAIQRSREVWLLVSGPGKADAVAAAIGGAD--PVSVPAAGAV  249 (268)
T ss_dssp             CCBTTBCTTCHHHHCSSCSEEEESCCSSSSSCEEEECHHHHTTSSEEEEEECSGGGHHHHHHHHTTCC--TTTSGGGGCC
T ss_pred             ccccccCCCChhhhhhceEEEEecCCCCCCCceEEEechhhhccceEEEEecCCCchHHHHHHhcCCC--Cccccccccc
Confidence            99999999999887776777778778899999999999999999999999999999999999999876  7899999999


Q ss_pred             cCCCeEEEEecHHHHhhcc
Q 024468          243 PTNGKLVWFLDKPAASKLQ  261 (267)
Q Consensus       243 ~~~~~~~~~~D~~Aa~~l~  261 (267)
                       .|++++||+|++|+++|.
T Consensus       250 -~h~~~~~~lD~~Aa~~L~  267 (268)
T 3ico_A          250 -GRQNTLWLLDRDAAAKLP  267 (268)
T ss_dssp             -CSSEEEEEEEHHHHTTCC
T ss_pred             -cccceEEEecchhhhhCC
Confidence             699999999999999885
>3tx2_A Probable 6-phosphogluconolactonase; ssgcid, hydrolase; 1.50A {Mycobacterium abscessus} Back     alignment and structure
>3oc6_A 6-phosphogluconolactonase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, carboxylic ester hydrolase; 2.10A {Mycobacterium smegmatis} Back     alignment and structure
>3eb9_A 6-phosphogluconolactonase; catalytic mechanism, pentose phosphate pathway, hydrolase, zinc binding site; HET: FLC; 2.00A {Trypanosoma brucei} PDB: 2j0e_A* 3e7f_A* Back     alignment and structure
>3hn6_A Glucosamine-6-phosphate deaminase; niaid, ssgcid, decode, UW, SBRI, infectious disease, LYME DI non-hodgkin lymphomas, neuroborreliosis; 2.20A {Borrelia burgdorferi} Back     alignment and structure
>3css_A 6-phosphogluconolactonase; structural genomics, medical structural genomics of pathogen protozoa consortium, SGPP, leish hydrolase; 1.70A {Leishmania braziliensis} PDB: 3ch7_A Back     alignment and structure
>3lwd_A 6-phosphogluconolactonase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; 1.75A {Chromohalobacter salexigens} Back     alignment and structure
>3nwp_A 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, hydrolase; HET: MSE P6G PG4; 1.40A {Shewanella baltica} Back     alignment and structure
>1y89_A DEVB protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; HET: 2PE; 2.00A {Vibrio cholerae o1 biovar eltor str} Back     alignment and structure
>3lhi_A Putative 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.33A {Neisseria gonorrhoeae} Back     alignment and structure
>3e15_A Glucose-6-phosphate 1-dehydrogenase; 6-phosphogluconolactonase, malaria, carbohydrate metabolism, glucose metabolism, NADP, oxidoreductase,; HET: MSE; 2.00A {Plasmodium vivax} Back     alignment and structure
>1vl1_A 6PGL, 6-phosphogluconolactonase; TM1154, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO hydrolase; HET: CIT; 1.55A {Thermotoga maritima} SCOP: c.124.1.1 PDB: 1pbt_A Back     alignment and structure
>1ne7_A Glucosamine-6-phosphate isomerase; V-type like allosteric enzyme, conformational disorder, conformational differences, hydrolase; HET: GLC 16G AGP; 1.75A {Homo sapiens} SCOP: c.124.1.1 Back     alignment and structure
>2bkx_A Glucosamine-6-phosphate deaminase; hydrolase, substrate inhibition, fructose-6-phosphate; HET: F6R; 1.4A {Bacillus subtilis} PDB: 2bkv_A* Back     alignment and structure
>1fs5_A Glucosamine-6-phosphate deaminase; allosteric enzyme, entropic effects, aldose-ketose isomerase multiple conformers, isomerase; HET: 16G TLA; 1.73A {Escherichia coli} SCOP: c.124.1.1 PDB: 1cd5_A 1fqo_A* 1frz_A* 1dea_A* 1fs6_A 1fsf_A 1hor_A* 1hot_A* 2wu1_A* 1jt9_A Back     alignment and structure
>2ri0_A Glucosamine-6-phosphate deaminase; carbohydrate metabolism,; HET: BTB; 1.60A {Streptococcus mutans} PDB: 2ri1_A* Back     alignment and structure
>2okg_A Central glycolytic gene regulator; alpha/beta/alpha sandwich, rossmann-like fold, structural genomics, PSI-2, protein structure initiative; HET: MSE G3H; 1.65A {Bacillus subtilis} SCOP: c.124.1.8 PDB: 3bxe_A* 3bxf_A* 3bxg_A* 3bxh_A* Back     alignment and structure
>2r5f_A Transcriptional regulator, putative; transcription regulator, sugar-binding domain, structural GE PFAM04198, PSI-2; 2.10A {Pseudomonas syringae PV} SCOP: c.124.1.8 Back     alignment and structure
>2gnp_A Transcriptional regulator; structural genomics, MCSG, APC84799, streptococcus pneumonia PSI, protein structure initiative; 1.65A {Streptococcus pneumoniae} SCOP: c.124.1.8 Back     alignment and structure
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8 Back     alignment and structure
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae} Back     alignment and structure
>3nze_A Putative transcriptional regulator, sugar-binding; structural genomics, PSI-2, protein structure initiative; 1.70A {Arthrobacter aurescens} SCOP: c.124.1.0 Back     alignment and structure
>3efb_A Probable SOR-operon regulator; alpha-beta-alpha sandwich, center for structural genomics of infectious diseases, csgid, transcription; HET: MSE; 2.00A {Shigella flexneri 2A} SCOP: c.124.1.8 Back     alignment and structure
>3kv1_A Transcriptional repressor; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.70A {Vibrio fischeri} SCOP: c.124.1.0 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 267
d1ne7a_281 c.124.1.1 (A:) Glucosamine 6-phosphate deaminase/i 1e-45
d1fsfa_266 c.124.1.1 (A:) Glucosamine 6-phosphate deaminase/i 2e-44
d1vl1a_218 c.124.1.1 (A:) 6-phosphogluconolactonase {Thermoto 1e-43
d2o0ma1247 c.124.1.8 (A:95-341) Transcriptional regulator EF1 8e-17
d2okga1250 c.124.1.8 (A:89-338) Central glycolytic gene regul 6e-11
d3efba1255 c.124.1.8 (A:11-265) Sor-operon regulator SorC {Sh 5e-06
>d1ne7a_ c.124.1.1 (A:) Glucosamine 6-phosphate deaminase/isomerase NagB {Human (Homo sapiens) [TaxId: 9606]} Length = 281 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: NagB-like
domain: Glucosamine 6-phosphate deaminase/isomerase NagB
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  152 bits (385), Expect = 1e-45
 Identities = 54/264 (20%), Positives = 99/264 (37%), Gaps = 31/264 (11%)

Query: 12  ELRIHESVEELSTNLADYIAD-LSEASVKERGVFAIALSGGSL-IGLMGKLCEAPYNKTV 69
           +L I E   + S   A YI + + + +      F + L  GS  +G   KL E   N  +
Sbjct: 2   KLIILEHYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTGSTPLGCYKKLIEYYKNGDL 61

Query: 70  DWAKWYIFWADER-VVAKNHSDSNYKLAKEGLLSKQVPIVPSHVHSINDSLSAEEAADEY 128
            +     F  DE   + ++H +S +         K + I P + H ++ +    +A  + 
Sbjct: 62  SFKYVKTFNMDEYVGLPRDHPESYHSFMWNNFF-KHIDIHPENTHILDGNAVDLQAECDA 120

Query: 129 EFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVASLFPNHSVLDVKNQW------- 181
                            I      +L + G+G DGH+A   P  S++             
Sbjct: 121 -------------FEEKIKAAGGIELFVGGIGPDGHIAFNEPGSSLVSRTRVKTLAMDTI 167

Query: 182 ----VSFITDSPKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGPNCPSLP 237
                 F  +  K P   +T  +  +  A  V++++TG  KA A++ AI+          
Sbjct: 168 LANARFFDGELTKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIE--EGVNHMWT 225

Query: 238 ARMAQPTNGKLVWFLDKPAASKLQ 261
               Q  + + V+  D+ A  +L+
Sbjct: 226 VSAFQ-QHPRTVFVCDEDATLELK 248
>d1fsfa_ c.124.1.1 (A:) Glucosamine 6-phosphate deaminase/isomerase NagB {Escherichia coli [TaxId: 562]} Length = 266 Back     information, alignment and structure
>d1vl1a_ c.124.1.1 (A:) 6-phosphogluconolactonase {Thermotoga maritima [TaxId: 2336]} Length = 218 Back     information, alignment and structure
>d2o0ma1 c.124.1.8 (A:95-341) Transcriptional regulator EF1965 {Enterococcus faecalis [TaxId: 1351]} Length = 247 Back     information, alignment and structure
>d2okga1 c.124.1.8 (A:89-338) Central glycolytic gene regulator CggR {Bacillus subtilis [TaxId: 1423]} Length = 250 Back     information, alignment and structure
>d3efba1 c.124.1.8 (A:11-265) Sor-operon regulator SorC {Shigella flexneri [TaxId: 623]} Length = 255 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query267
d1ne7a_281 Glucosamine 6-phosphate deaminase/isomerase NagB { 100.0
d1vl1a_218 6-phosphogluconolactonase {Thermotoga maritima [Ta 100.0
d1fsfa_266 Glucosamine 6-phosphate deaminase/isomerase NagB { 100.0
d2o0ma1247 Transcriptional regulator EF1965 {Enterococcus fae 99.89
d3efba1255 Sor-operon regulator SorC {Shigella flexneri [TaxI 99.67
d2okga1250 Central glycolytic gene regulator CggR {Bacillus s 99.63
d2gnpa1262 Transcriptional regulator SP0247 {Streptococcus pn 99.46
d2r5fa1258 Transcriptional regulator PSPTO2395 {Pseudomonas s 98.91
>d1ne7a_ c.124.1.1 (A:) Glucosamine 6-phosphate deaminase/isomerase NagB {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: NagB-like
domain: Glucosamine 6-phosphate deaminase/isomerase NagB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-61  Score=427.05  Aligned_cols=233  Identities=22%  Similarity=0.239  Sum_probs=206.5

Q ss_pred             cEEEEeCCHHHHHHHHHHHHHHHHHHHH-HhcCcEEEEEcCCChHHHHHHHh-cccCCCCCCCCceeEEeeceec-cCCC
Q 024468           11 GELRIHESVEELSTNLADYIADLSEASV-KERGVFAIALSGGSLIGLMGKLC-EAPYNKTVDWAKWYIFWADERV-VAKN   87 (267)
Q Consensus        11 ~~~~i~~~~~~l~~~~a~~i~~~i~~~i-~~~~~~~l~lsGGstp~~l~~ll-~~~~~~~i~w~~v~~f~~DEr~-vp~~   87 (267)
                      |++++++|++++++.+|+.|++.|.+.. ..++.++|+||||+||..+|+.| ..+++.+++|++|+||++|||+ +|.+
T Consensus         1 Mkiii~~d~~e~s~~aA~~i~~~I~~~~~~~~~~~~i~lsGGsTP~~~y~~L~~~~~~~~i~w~~v~if~~DEr~~~~~d   80 (281)
T d1ne7a_           1 MKLIILEHYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTGSTPLGCYKKLIEYYKNGDLSFKYVKTFNMDEYVGLPRD   80 (281)
T ss_dssp             CEEEEESSHHHHHHHHHHHHHHHHHHHCCBTTBCEEEEECCSHHHHHHHHHHHHHHHTTSCCCTTEEEEESEEETTSCTT
T ss_pred             CeEEEECCHHHHHHHHHHHHHHHHHHhccccCCCEEEEECCCcCHHHHHHHHHHHHhccCCChhHeEEEecceeecCCCc
Confidence            8999999999999999999998775544 45678999999999999999755 4455678999999999999997 5999


Q ss_pred             ChhhHHHHHHHHhcccCCCCCCCCeEeCCCCC-CHHHHHHHHHHHHHHhhhhccccccCCCCCCcceEEEeccCCCCcee
Q 024468           88 HSDSNYKLAKEGLLSKQVPIVPSHVHSINDSL-SAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVA  166 (267)
Q Consensus        88 ~~~Sn~~~l~~~ll~~~~~i~~~~~~~~~~~~-d~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGHiA  166 (267)
                      |++||+++++++||+++ +++++|+|++++.. +++++|++|++.|++              .|+||+++||||+|||||
T Consensus        81 ~~~Sn~~~~~~~l~~~~-~i~~~~i~~~~~~~~~~~~~~~~~~~~i~~--------------~~~~Dl~lLGiG~DGH~A  145 (281)
T d1ne7a_          81 HPESYHSFMWNNFFKHI-DIHPENTHILDGNAVDLQAECDAFEEKIKA--------------AGGIELFVGGIGPDGHIA  145 (281)
T ss_dssp             STTSHHHHHHHHTGGGS-CCCGGGEECCCTTCSSHHHHHHHHHHHHHH--------------TTSCSEEEECCCTTCCST
T ss_pred             chhhHHHHHHHHHhhhc-ccchhheecccccCCCHHHHHHHHHHHHHh--------------CCCccEEEeccCccceee
Confidence            99999999999999999 99999999998875 899999999999987              378999999999999999


Q ss_pred             ccCCCCCccccccceEEe------------ecCCCCCCCCeEEeCHHHHHhccceeEEEeCccHHHHHHHHHhCCCCCCc
Q 024468          167 SLFPNHSVLDVKNQWVSF------------ITDSPKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGPNCP  234 (267)
Q Consensus       167 slfP~~~~~~~~~~~v~~------------~~~~~~~p~~riTl~~~~i~~A~~iill~~G~~K~~~l~~~l~~~~~~~~  234 (267)
                      ||||+++...+. +.+..            ..+.+++|++|||||++.|++||+|+|+++|++|++++++++++++  +.
T Consensus       146 slfP~~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~P~~riTltl~~i~~Ak~iill~~G~~Ka~~v~~~l~~~~--~~  222 (281)
T d1ne7a_         146 FNEPGSSLVSRT-RVKTLAMDTILANARFFDGELTKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGV--NH  222 (281)
T ss_dssp             TCCTTCCTTCCS-EEEECCHHHHHHHGGGTTTCGGGSCSEEEECCHHHHHTSSCEEEEECSGGGHHHHHHHHTSCC--CT
T ss_pred             eccCCccccccc-eeeeechhhHHHHHHhcccCcCCCCceeeecCHHHHhhcceEEEEEeCccHHHHHHHHHcCCC--CC
Confidence            999999876553 22221            1245789999999999999999999999999999999999999987  67


Q ss_pred             cccccccccCCCeEEEEecHHHHhhccc
Q 024468          235 SLPARMAQPTNGKLVWFLDKPAASKLQS  262 (267)
Q Consensus       235 ~~Pas~l~~~~~~~~~~~D~~Aa~~l~~  262 (267)
                      ++|||+|+ .|++++|++|++||++|..
T Consensus       223 ~~PAS~l~-~h~~~~~~~D~~AAs~L~~  249 (281)
T d1ne7a_         223 MWTVSAFQ-QHPRTVFVCDEDATLELKV  249 (281)
T ss_dssp             TSGGGGGG-GCSSEEEEEEGGGGTTSBH
T ss_pred             ccChHHHc-cCCCEEEEEeHHHHcCCch
Confidence            89999999 7999999999999999863
>d1vl1a_ c.124.1.1 (A:) 6-phosphogluconolactonase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1fsfa_ c.124.1.1 (A:) Glucosamine 6-phosphate deaminase/isomerase NagB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2o0ma1 c.124.1.8 (A:95-341) Transcriptional regulator EF1965 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d3efba1 c.124.1.8 (A:11-265) Sor-operon regulator SorC {Shigella flexneri [TaxId: 623]} Back     information, alignment and structure
>d2okga1 c.124.1.8 (A:89-338) Central glycolytic gene regulator CggR {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2gnpa1 c.124.1.8 (A:56-317) Transcriptional regulator SP0247 {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d2r5fa1 c.124.1.8 (A:59-316) Transcriptional regulator PSPTO2395 {Pseudomonas syringae [TaxId: 317]} Back     information, alignment and structure