Citrus Sinensis ID: 024486

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------
MGNSEKDSTSKSINETVNGSHQFTVKGYSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKNPEDGALYVSVFIALASEGTDVRALFELTLVDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFFKRTSLETSDYIKDDCLLINCTVGVVRNRLEGPKQYSIPVPPSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKVMLLFSSYSAFISTWKRIEKNACVYMH
ccccccccccEEEEEEEEEEEEEEEccccccccccccEEEEcccccccccEEEEEEEcccccccccccEEEEEEEEccccccEEEEEEEEEEEcccccEEEEEEccccccccccEEEccccccccEEEEEEcccccccccccccEEEEEEEEEEEEEccccccccccccccccccccHHHHHcccccccEEEEEccEEEEEEEEHHHHccHHHHHHHcccccccccccEEEccccHHHHHHHccEEEcccccccHHHHHHHHHHHcc
ccccccccccEEEEEEEEEEEEEEEEccEccccccccEEEEcccEEEcccEEEEEEccccccccccccEEEEEEEEccccccEEEEEEEEEEEccccccccccccccccccccccccccccccccccHHEEHHHHHccccccccEEEEEEEEEEEEEcEccccccccEccccHHHHHHHHHHHcccccEEEEEEcccEEHHHHHHHHcccHHHHHHHccccccccccEEEEccccHHHHHHHHHHHHcccccccccccccccHHHcc
mgnsekdstsksinetvngshqftvkgyslakgmgpgkclssdvftvggydwaiyfypdgknpedgaLYVSVFIALASEGTDVRALFELTLvdqsgkgkhkvhshfdralesgpytlkyrgsmwgykRFFKRTsletsdyikddclliNCTVGvvrnrlegpkqysipvppsdmgqgLKDLLEseigcdivfEVGDETFKAHKLILAARSPVFRAQFyglvgdrnldkvVVKDVEPSIFKVMLLFSSYSAFISTWKRIEKNACVYMH
mgnsekdstsksinetvngshqFTVKGYSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKNPEDGALYVSVFIALASEGTDVRALFELTLVdqsgkgkhkvhshfdralesgpytlkyrgsmWGYKRFFKRTSLEtsdyikddcllINCTVGVvrnrlegpkqysipvppsdMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGlvgdrnldkVVVKDVEPSIFKVMLLFSSYSAFISTWKRIEKNACVYMH
MGNSEKDSTSKSINETVNGSHQFTVKGYSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKNPEDGALYVSVFIALASEGTDVRALFELTLVDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFFKRTSLETSDYIKDDCLLINCTVGVVRNRLEGPKQYSIPVPPSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKVMLLFSSYSAFISTWKRIEKNACVYMH
*********************QFTVKGYSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKNPEDGALYVSVFIALASEGTDVRALFELTLVDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFFKRTSLETSDYIKDDCLLINCTVGVVRNRLEGPKQY***********GLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKVMLLFSSYSAFISTWKRIEKNACVY**
******D****SINETVNGSHQFTVKGYSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKNPEDGALYVSVFIALASEGTDVRALFELTLVDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFFKRTSLETSDYIKDDCLLINCTVGVVRNRLEGPKQYSIPVPPSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKVMLLFSSYSAFISTWKRIEKNACVYMH
*************NETVNGSHQFTVKGYSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKNPEDGALYVSVFIALASEGTDVRALFELTLVD***********HFDRALESGPYTLKYRGSMWGYKRFFKRTSLETSDYIKDDCLLINCTVGVVRNRLEGPKQYSIPVPPSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKVMLLFSSYSAFISTWKRIEKNACVYMH
*******STSKSINETVNGSHQFTVKGYSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKNPEDGALYVSVFIALASEGTDVRALFELTLVDQSG*****************PYTLKYRGSMWGYKRFFKRTSLETSDYIKDDCLLINCTVGVVRNRLEGPKQYSIPVPPSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKVMLLFSSYSAFIS**************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
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MGNSEKDSTSKSINETVNGSHQFTVKGYSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKNPEDGALYVSVFIALASEGTDVRALFELTLVDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFFKRTSLETSDYIKDDCLLINCTVGVVRNRLEGPKQYSIPVPPSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKVMLLFSSYSAFISTWKRIEKNACVYMH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query267 2.2.26 [Sep-21-2011]
O22286 408 BTB/POZ and MATH domain-c yes no 0.895 0.585 0.782 1e-116
Q9SRV1 465 BTB/POZ and MATH domain-c no no 0.913 0.524 0.665 2e-94
Q8L765 407 BTB/POZ and MATH domain-c no no 0.857 0.562 0.689 9e-93
Q9M8J9 406 BTB/POZ and MATH domain-c no no 0.906 0.596 0.651 2e-91
A1L4W5 415 BTB/POZ and MATH domain-c no no 0.898 0.578 0.626 1e-88
Q1EBV6 410 BTB/POZ and MATH domain-c no no 0.887 0.578 0.642 6e-87
Q6P8B3374 Speckle-type POZ protein yes no 0.831 0.593 0.288 2e-20
Q7ZX06374 Speckle-type POZ protein N/A no 0.831 0.593 0.288 2e-20
Q0IHH9374 Speckle-type POZ protein N/A no 0.831 0.593 0.288 2e-20
Q5NVK7374 Speckle-type POZ protein yes no 0.831 0.593 0.284 7e-20
>sp|O22286|BPM3_ARATH BTB/POZ and MATH domain-containing protein 3 OS=Arabidopsis thaliana GN=BPM3 PE=1 SV=1 Back     alignment and function desciption
 Score =  416 bits (1069), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 187/239 (78%), Positives = 217/239 (90%)

Query: 7   DSTSKSINETVNGSHQFTVKGYSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKNPEDG 66
           DS S S  ETVNGSHQFT++GYSLAKGM PGK + SD+F+VGGYDWAIYFYPDGKNPED 
Sbjct: 13  DSVSTSFIETVNGSHQFTIQGYSLAKGMSPGKFIQSDIFSVGGYDWAIYFYPDGKNPEDQ 72

Query: 67  ALYVSVFIALASEGTDVRALFELTLVDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGY 126
           + Y+S+FIALAS+  D+RALFELTL+DQSGKGKHKVHSHFDRALE GPYTLKY+GSMWGY
Sbjct: 73  SSYISLFIALASDSNDIRALFELTLMDQSGKGKHKVHSHFDRALEGGPYTLKYKGSMWGY 132

Query: 127 KRFFKRTSLETSDYIKDDCLLINCTVGVVRNRLEGPKQYSIPVPPSDMGQGLKDLLESEI 186
           KRFFKR++LETSDY+KDDCL+INCTVGVVR RLEGPKQY I +P S+MGQGLKDLL+SE+
Sbjct: 133 KRFFKRSALETSDYLKDDCLVINCTVGVVRARLEGPKQYGIVLPLSNMGQGLKDLLDSEV 192

Query: 187 GCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKVMLLF 245
           GCDI F+VGDET+KAHKLILAARSPVFRAQF+G +G+ N+D++V+ D+EPSIFK ML F
Sbjct: 193 GCDIAFQVGDETYKAHKLILAARSPVFRAQFFGPIGNNNVDRIVIDDIEPSIFKAMLSF 251
May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SRV1|BPM4_ARATH BTB/POZ and MATH domain-containing protein 4 OS=Arabidopsis thaliana GN=BPM4 PE=1 SV=1 Back     alignment and function description
>sp|Q8L765|BPM1_ARATH BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis thaliana GN=BPM1 PE=1 SV=1 Back     alignment and function description
>sp|Q9M8J9|BPM2_ARATH BTB/POZ and MATH domain-containing protein 2 OS=Arabidopsis thaliana GN=BPM2 PE=1 SV=1 Back     alignment and function description
>sp|A1L4W5|BPM6_ARATH BTB/POZ and MATH domain-containing protein 6 OS=Arabidopsis thaliana GN=BPM6 PE=1 SV=1 Back     alignment and function description
>sp|Q1EBV6|BPM5_ARATH BTB/POZ and MATH domain-containing protein 5 OS=Arabidopsis thaliana GN=BPM5 PE=1 SV=1 Back     alignment and function description
>sp|Q6P8B3|SPOP_XENTR Speckle-type POZ protein OS=Xenopus tropicalis GN=spop PE=2 SV=1 Back     alignment and function description
>sp|Q7ZX06|SPOPA_XENLA Speckle-type POZ protein A OS=Xenopus laevis GN=spop-a PE=2 SV=1 Back     alignment and function description
>sp|Q0IHH9|SPOPB_XENLA Speckle-type POZ protein B OS=Xenopus laevis GN=spop-b PE=2 SV=1 Back     alignment and function description
>sp|Q5NVK7|SPOP_PONAB Speckle-type POZ protein OS=Pongo abelii GN=SPOP PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query267
255566466 408 Speckle-type POZ protein, putative [Rici 0.910 0.595 0.864 1e-127
224112703 408 predicted protein [Populus trichocarpa] 0.902 0.590 0.858 1e-123
225449392 406 PREDICTED: BTB/POZ and MATH domain-conta 0.902 0.593 0.850 1e-122
297823865 406 hypothetical protein ARALYDRAFT_903228 [ 0.895 0.588 0.790 1e-114
18405153 408 BTB/POZ and MATH domain-containing prote 0.895 0.585 0.782 1e-114
21595740 408 unknown [Arabidopsis thaliana] 0.895 0.585 0.782 1e-114
79324787343 BTB/POZ and MATH domain-containing prote 0.895 0.696 0.782 1e-113
356569157 414 PREDICTED: BTB/POZ and MATH domain-conta 0.902 0.582 0.768 1e-107
356539895 415 PREDICTED: BTB/POZ and MATH domain-conta 0.902 0.580 0.764 1e-105
357111830 397 PREDICTED: BTB/POZ and MATH domain-conta 0.917 0.617 0.693 1e-102
>gi|255566466|ref|XP_002524218.1| Speckle-type POZ protein, putative [Ricinus communis] gi|223536495|gb|EEF38142.1| Speckle-type POZ protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  459 bits (1180), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 210/243 (86%), Positives = 233/243 (95%)

Query: 3   NSEKDSTSKSINETVNGSHQFTVKGYSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKN 62
           +S+K+S S SINETVNGSHQF++KGYSLAKGMG GKC++SD+FTVGGYDWAIYFYPDGKN
Sbjct: 7   DSDKESCSMSINETVNGSHQFSIKGYSLAKGMGAGKCIASDIFTVGGYDWAIYFYPDGKN 66

Query: 63  PEDGALYVSVFIALASEGTDVRALFELTLVDQSGKGKHKVHSHFDRALESGPYTLKYRGS 122
           PED ++YVSVF+ALASEGTDVRALFELTLVDQSG GKHKVHSHFDRALESGPYTLKYRGS
Sbjct: 67  PEDSSMYVSVFVALASEGTDVRALFELTLVDQSGNGKHKVHSHFDRALESGPYTLKYRGS 126

Query: 123 MWGYKRFFKRTSLETSDYIKDDCLLINCTVGVVRNRLEGPKQYSIPVPPSDMGQGLKDLL 182
           MWGYKRFF+RT+LE SDYIKDDCL++NCTVGVVR RLEGPKQYSI +PPSDMGQGLK+LL
Sbjct: 127 MWGYKRFFRRTTLENSDYIKDDCLIMNCTVGVVRTRLEGPKQYSISLPPSDMGQGLKELL 186

Query: 183 ESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKVM 242
           ESE+GCDIVF+VGDETFKAHKLILAARSPVFRAQF+GLVGD NLDKVVV+D++PSIFK M
Sbjct: 187 ESEVGCDIVFQVGDETFKAHKLILAARSPVFRAQFFGLVGDPNLDKVVVEDIDPSIFKAM 246

Query: 243 LLF 245
           LLF
Sbjct: 247 LLF 249

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224112703|ref|XP_002316266.1| predicted protein [Populus trichocarpa] gi|222865306|gb|EEF02437.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225449392|ref|XP_002282536.1| PREDICTED: BTB/POZ and MATH domain-containing protein 3-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297823865|ref|XP_002879815.1| hypothetical protein ARALYDRAFT_903228 [Arabidopsis lyrata subsp. lyrata] gi|297325654|gb|EFH56074.1| hypothetical protein ARALYDRAFT_903228 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18405153|ref|NP_030522.1| BTB/POZ and MATH domain-containing protein [Arabidopsis thaliana] gi|75277254|sp|O22286.1|BPM3_ARATH RecName: Full=BTB/POZ and MATH domain-containing protein 3; AltName: Full=Protein BTB-POZ AND MATH DOMAIN 3; Short=AtBPM3 gi|2642158|gb|AAB87125.1| expressed protein [Arabidopsis thaliana] gi|22135872|gb|AAM91518.1| unknown protein [Arabidopsis thaliana] gi|23197672|gb|AAN15363.1| unknown protein [Arabidopsis thaliana] gi|330254625|gb|AEC09719.1| BTB/POZ and MATH domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|21595740|gb|AAM66127.1| unknown [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|79324787|ref|NP_001031516.1| BTB/POZ and MATH domain-containing protein [Arabidopsis thaliana] gi|222422863|dbj|BAH19418.1| AT2G39760 [Arabidopsis thaliana] gi|330254626|gb|AEC09720.1| BTB/POZ and MATH domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356569157|ref|XP_003552772.1| PREDICTED: BTB/POZ and MATH domain-containing protein 3-like [Glycine max] Back     alignment and taxonomy information
>gi|356539895|ref|XP_003538428.1| PREDICTED: BTB/POZ and MATH domain-containing protein 3-like [Glycine max] Back     alignment and taxonomy information
>gi|357111830|ref|XP_003557713.1| PREDICTED: BTB/POZ and MATH domain-containing protein 3-like [Brachypodium distachyon] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query267
TAIR|locus:2063953 408 BPM3 [Arabidopsis thaliana (ta 0.895 0.585 0.782 3.6e-105
TAIR|locus:2079384 465 BPM4 "BTB-POZ and MATH domain 0.928 0.533 0.658 1.8e-87
TAIR|locus:2082445 406 BPM2 "BTB-POZ and MATH domain 0.887 0.583 0.661 4.4e-84
TAIR|locus:2147167 410 BPM5 "BTB-POZ and MATH domain 0.887 0.578 0.642 8.2e-83
TAIR|locus:2080188 415 BPM6 "BTB-POZ and MATH domain 0.898 0.578 0.626 1.5e-81
UNIPROTKB|Q0IHH9374 spop-b "Speckle-type POZ prote 0.827 0.590 0.308 4.3e-22
UNIPROTKB|Q6P8B3374 spop "Speckle-type POZ protein 0.827 0.590 0.308 4.3e-22
UNIPROTKB|Q7ZX06374 spop-a "Speckle-type POZ prote 0.827 0.590 0.308 4.3e-22
ZFIN|ZDB-GENE-050320-3 394 spopla "speckle-type POZ prote 0.835 0.565 0.312 1e-21
UNIPROTKB|E1C049374 SPOP "Uncharacterized protein" 0.827 0.590 0.304 1.5e-21
TAIR|locus:2063953 BPM3 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1041 (371.5 bits), Expect = 3.6e-105, P = 3.6e-105
 Identities = 187/239 (78%), Positives = 217/239 (90%)

Query:     7 DSTSKSINETVNGSHQFTVKGYSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKNPEDG 66
             DS S S  ETVNGSHQFT++GYSLAKGM PGK + SD+F+VGGYDWAIYFYPDGKNPED 
Sbjct:    13 DSVSTSFIETVNGSHQFTIQGYSLAKGMSPGKFIQSDIFSVGGYDWAIYFYPDGKNPEDQ 72

Query:    67 ALYVSVFIALASEGTDVRALFELTLVDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGY 126
             + Y+S+FIALAS+  D+RALFELTL+DQSGKGKHKVHSHFDRALE GPYTLKY+GSMWGY
Sbjct:    73 SSYISLFIALASDSNDIRALFELTLMDQSGKGKHKVHSHFDRALEGGPYTLKYKGSMWGY 132

Query:   127 KRFFKRTSLETSDYIKDDCLLINCTVGVVRNRLEGPKQYSIPVPPSDMGQGLKDLLESEI 186
             KRFFKR++LETSDY+KDDCL+INCTVGVVR RLEGPKQY I +P S+MGQGLKDLL+SE+
Sbjct:   133 KRFFKRSALETSDYLKDDCLVINCTVGVVRARLEGPKQYGIVLPLSNMGQGLKDLLDSEV 192

Query:   187 GCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKVMLLF 245
             GCDI F+VGDET+KAHKLILAARSPVFRAQF+G +G+ N+D++V+ D+EPSIFK ML F
Sbjct:   193 GCDIAFQVGDETYKAHKLILAARSPVFRAQFFGPIGNNNVDRIVIDDIEPSIFKAMLSF 251
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0005515 "protein binding" evidence=IPI
GO:0042802 "identical protein binding" evidence=IPI
GO:0005829 "cytosol" evidence=IDA
GO:0006970 "response to osmotic stress" evidence=IEP
GO:0071472 "cellular response to salt stress" evidence=IEP
GO:0031396 "regulation of protein ubiquitination" evidence=IMP
TAIR|locus:2079384 BPM4 "BTB-POZ and MATH domain 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082445 BPM2 "BTB-POZ and MATH domain 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2147167 BPM5 "BTB-POZ and MATH domain 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080188 BPM6 "BTB-POZ and MATH domain 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q0IHH9 spop-b "Speckle-type POZ protein B" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|Q6P8B3 spop "Speckle-type POZ protein" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
UNIPROTKB|Q7ZX06 spop-a "Speckle-type POZ protein A" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050320-3 spopla "speckle-type POZ protein-like a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1C049 SPOP "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O22286BPM3_ARATHNo assigned EC number0.78240.89510.5857yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query267
cd00121126 cd00121, MATH, MATH (meprin and TRAF-C homology) d 3e-27
pfam00651101 pfam00651, BTB, BTB/POZ domain 2e-15
smart0022597 smart00225, BTB, Broad-Complex, Tramtrack and Bric 6e-12
cd03773132 cd03773, MATH_TRIM37, Tripartite motif containing 8e-09
smart0006195 smart00061, MATH, meprin and TRAF homology 2e-08
pfam00917116 pfam00917, MATH, MATH domain 2e-06
cd03774139 cd03774, MATH_SPOP, Speckle-type POZ protein (SPOP 2e-06
PHA02713 557 PHA02713, PHA02713, hypothetical protein; Provisio 2e-04
cd00270149 cd00270, MATH_TRAF_C, Tumor Necrosis Factor Recept 0.001
>gnl|CDD|238068 cd00121, MATH, MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins Back     alignment and domain information 
 Score =  101 bits (254), Expect = 3e-27
 Identities = 45/139 (32%), Positives = 63/139 (45%), Gaps = 19/139 (13%)

Query: 19  GSHQFTVKGYSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKNPEDGALYVSVFIALAS 78
           G H + +  +S  +G    + + S  F VGGY W I  YP+G        Y+S+++ L  
Sbjct: 1   GKHTWKIVNFSELEG----ESIYSPPFEVGGYKWRIRIYPNGDGESGD--YLSLYLELDK 54

Query: 79  EGTD-----VRALFELTLVDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFFKRT 133
             +D     VRA F L LV+Q+G GK    S               +GS WG+ +F    
Sbjct: 55  GESDLEKWSVRAEFTLKLVNQNG-GKSLSKSFT-------HVFFSEKGSGWGFPKFISWD 106

Query: 134 SLETSDYIKDDCLLINCTV 152
            LE S Y+ DD L I   V
Sbjct: 107 DLEDSYYLVDDSLTIEVEV 125

Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH domain has been shown to bind peptide/protein substrates in TRAFs and HAUSP. It is possible that the MATH domain in other members of this superfamily also interacts with various protein substrates. The TRAF domain may also be involved in the trimerization of TRAFs. Based on homology, it is postulated that the MATH domain in meprins may be involved in its tetramer assembly and that the MATH domain, in general, may take part in diverse modular arrangements defined by adjacent multimerization domains. Length = 126
>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain Back     alignment and domain information
>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>gnl|CDD|239742 cd03773, MATH_TRIM37, Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins Back     alignment and domain information
>gnl|CDD|214496 smart00061, MATH, meprin and TRAF homology Back     alignment and domain information
>gnl|CDD|216189 pfam00917, MATH, MATH domain Back     alignment and domain information
>gnl|CDD|239743 cd03774, MATH_SPOP, Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP Back     alignment and domain information
>gnl|CDD|165086 PHA02713, PHA02713, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|238168 cd00270, MATH_TRAF_C, Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 267
cd03774139 MATH_SPOP Speckle-type POZ protein (SPOP) family, 99.94
cd03780148 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-A 99.94
cd03777186 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-A 99.94
cd03779147 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) A 99.93
cd03781154 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-A 99.93
cd03772137 MATH_HAUSP Herpesvirus-associated ubiquitin-specif 99.93
cd00270149 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)- 99.93
cd03775134 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p 99.93
cd03776147 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-A 99.93
cd03771167 MATH_Meprin Meprin family, MATH domain; Meprins ar 99.93
cd03773132 MATH_TRIM37 Tripartite motif containing protein 37 99.92
cd03778164 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) A 99.92
cd00121126 MATH MATH (meprin and TRAF-C homology) domain; an 99.87
cd03783167 MATH_Meprin_Alpha Meprin family, Alpha subunit, MA 99.84
PF00917119 MATH: MATH domain; InterPro: IPR002083 Although ap 99.83
cd03782167 MATH_Meprin_Beta Meprin family, Beta subunit, MATH 99.83
PHA02713 557 hypothetical protein; Provisional 99.69
KOG4441 571 consensus Proteins containing BTB/POZ and Kelch do 99.66
smart0006195 MATH meprin and TRAF homology. 99.66
PHA02790 480 Kelch-like protein; Provisional 99.62
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 99.61
KOG4350 620 consensus Uncharacterized conserved protein, conta 99.6
PHA03098 534 kelch-like protein; Provisional 99.49
COG5077 1089 Ubiquitin carboxyl-terminal hydrolase [Posttransla 99.47
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 99.45
KOG2075 521 consensus Topoisomerase TOP1-interacting protein B 99.3
KOG1987 297 consensus Speckle-type POZ protein SPOP and relate 98.94
KOG4591 280 consensus Uncharacterized conserved protein, conta 98.85
KOG0783 1267 consensus Uncharacterized conserved protein, conta 98.69
KOG4682 488 consensus Uncharacterized conserved protein, conta 98.53
KOG2838 401 consensus Uncharacterized conserved protein, conta 98.2
KOG0783 1267 consensus Uncharacterized conserved protein, conta 98.17
KOG1863 1093 consensus Ubiquitin carboxyl-terminal hydrolase [P 97.61
KOG0297391 consensus TNF receptor-associated factor [Signal t 97.36
KOG2838401 consensus Uncharacterized conserved protein, conta 96.97
PF0393162 Skp1_POZ: Skp1 family, tetramerisation domain; Int 96.27
KOG0511 516 consensus Ankyrin repeat protein [General function 95.58
PF0221494 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi 95.57
KOG3473112 consensus RNA polymerase II transcription elongati 94.76
KOG2716 230 consensus Polymerase delta-interacting protein PDI 94.14
smart00512104 Skp1 Found in Skp1 protein family. Family of Skp1 92.39
KOG0511 516 consensus Ankyrin repeat protein [General function 92.15
KOG2714 465 consensus SETA binding protein SB1 and related pro 89.09
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP Back     alignment and domain information 
Probab=99.94  E-value=2.9e-26  Score=174.77  Aligned_cols=131  Identities=27%  Similarity=0.604  Sum_probs=107.0

Q ss_pred             eeeEEEEEEEcccccccCCCCCCeeeeCceeecc---eeEEEEEEcCCCCCCCCCCeEEEEEEEcc-CCceEEEEEEEEE
Q 024486           16 TVNGSHQFTVKGYSLAKGMGPGKCLSSDVFTVGG---YDWAIYFYPDGKNPEDGALYVSVFIALAS-EGTDVRALFELTL   91 (267)
Q Consensus        16 ~~~~~~~w~I~nfs~~~~~~~~~~~~S~~F~~gg---~~W~l~~yp~g~~~~~~~~~lsl~l~~~~-~~~~~~~~~~~~l   91 (267)
                      +...+|.|+|+|||.+++ +.++++.|++|.+||   ++|+|++||+|...+ +.+|+||||++.+ ..+++.|+|+|+|
T Consensus         2 ~~~~~~~w~I~~fS~~~~-~~~~~i~S~~F~vgg~~~~~W~l~~yP~G~~~~-~~~~iSlyL~l~~~~~~~v~a~f~~~l   79 (139)
T cd03774           2 VVKFCYMWTISNFSFCRE-EMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEE-SKDYLSLYLLLVSCPKSEVRAKFKFSI   79 (139)
T ss_pred             ceEEEEEEEECCchhhhh-cCCCEEECCCeecCCcCCceEEEEEeCCCCCCC-CCCeEEEEEEEccCCCCcEEEEEEEEE
Confidence            568899999999998875 567899999999998   599999999998643 5789999999976 4578999999999


Q ss_pred             eeCCCCCceeeeeccccccccCceeecccCcccccccccccccc--ccccCcCCCceEEEEEEEEEe
Q 024486           92 VDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFFKRTSL--ETSDYIKDDCLLINCTVGVVR  156 (267)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~fi~~~~l--~~~~~l~dd~l~i~~~i~v~~  156 (267)
                      +|+.+.......       ....+.|. ...+|||..|+++++|  +.+|||.||+|+|+|+|+|+.
T Consensus        80 ~n~~~~~~~~~~-------~~~~~~f~-~~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V~~  138 (139)
T cd03774          80 LNAKGEETKAME-------SQRAYRFV-QGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQ  138 (139)
T ss_pred             EecCCCeeeeec-------ccCcEeCC-CCCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEEEc
Confidence            999865432111       11124454 3579999999999999  457999999999999999974

SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses Back     alignment and domain information
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses Back     alignment and domain information
>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses Back     alignment and domain information
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1 Back     alignment and domain information
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway Back     alignment and domain information
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems Back     alignment and domain information
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast Back     alignment and domain information
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2 Back     alignment and domain information
>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces Back     alignment and domain information
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins Back     alignment and domain information
>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses Back     alignment and domain information
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins Back     alignment and domain information
>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides Back     alignment and domain information
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain [] Back     alignment and domain information
>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>smart00061 MATH meprin and TRAF homology Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown] Back     alignment and domain information
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription] Back     alignment and domain information
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>smart00512 Skp1 Found in Skp1 protein family Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query267
3hqi_A312 Structures Of Spop-Substrate Complexes: Insights In 6e-21
4eoz_A145 Crystal Structure Of The Spop Btb Domain Complexed 2e-09
3htm_A172 Structures Of Spop-Substrate Complexes: Insights In 2e-08
2cr2_A159 Solution Structure Of N-Terminal Domain Of Speckle- 7e-06
3ivb_A145 Structures Of Spop-Substrate Complexes: Insights In 2e-05
3hql_A145 Structures Of Spop-Substrate Complexes: Insights In 2e-05
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases: SpopmathxBTB3-Box-Pucsbc1 Length = 312 Back     alignment and structure 
Iteration: 1

 Score = 97.8 bits (242), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 116/240 (48%), Gaps = 17/240 (7%)
Query: 14  NETVNGSHQFTVKGYSLAKGMGPGKCLSSDVFTVGGYD---WAIYFYPDGKNPEDGALYV 70
           ++ V  S+ +T+  +S  +    G+ + S  F+ G  D   W +   P G + E      
Sbjct: 2   SKVVKFSYMWTINNFSFCRE-EMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLS 60
Query: 71  SVFIALASEGTDVRALFELTLVDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFF 130
              + ++   ++VRA F+ ++++  G+          +A+ES       +G  WG+K+F 
Sbjct: 61  LYLLLVSCPKSEVRAKFKFSILNAKGEET--------KAMESQRAYRFVQGKDWGFKKFI 112
Query: 131 KRTSL--ETSDYIKDDCLLINCTVGVVRNRLEGPKQYS---IPVPPSDMGQGLKDLLESE 185
           +R  L  E +  + DD L + C V VV++ +    Q +   + VP   +   L  L E+ 
Sbjct: 113 RRGFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPECRLADELGGLWENS 172
Query: 186 IGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKVMLLF 245
              D    V  + F+AHK ILAARSPVF A F   + +   ++V + DVEP +FK M+ F
Sbjct: 173 RFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCF 232
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With The Cul3 N- Terminal Domain Length = 145 Back     alignment and structure
>pdb|3HTM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases: Spopbtb3-Box Length = 172 Back     alignment and structure
>pdb|2CR2|A Chain A, Solution Structure Of N-Terminal Domain Of Speckle-Type Poz Protein Length = 159 Back     alignment and structure
>pdb|3IVB|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into Architectures Of Btb-Cul3 Ubiquitin Ligases: Spopmath- Macroh2asbcpep1 Length = 145 Back     alignment and structure
>pdb|3HQL|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:spopmathx-Pucsbc1_pep2 Length = 145 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query267
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 9e-81
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 4e-37
3ivv_A145 Speckle-type POZ protein; protein binding, nucleus 7e-37
1lb6_A160 TNF receptor-associated factor 6; TRAF6-CD40 compl 1e-36
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 1e-34
1flk_A228 TNF receptor associated factor 3; TNF signaling, T 3e-30
2gkw_A192 TNF receptor-associated factor 3; CD40, NF-KB sign 6e-30
2foj_A155 Ubiquitin carboxyl-terminal hydrolase 7; MATH doma 6e-30
1ca9_A192 TRAF2, protein (TNF receptor associated factor 2); 5e-29
1d00_A168 Tumor necrosis factor receptor associated protein 2e-27
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 4e-21
3hve_A 256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 1e-15
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 1e-15
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 2e-15
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 2e-15
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 2e-15
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 9e-15
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 2e-14
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 2e-14
2vpk_A116 Myoneurin; transcription regulation, transcription 3e-14
3b84_A119 Zinc finger and BTB domain-containing protein 48; 8e-14
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 2e-13
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 2e-13
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 6e-13
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 2e-12
3i3n_A 279 Kelch-like protein 11; structural genomics, BTB, K 5e-12
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 1e-11
2f1z_A 522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 1e-06
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312 Back     alignment and structure
 Score =  244 bits (625), Expect = 9e-81
 Identities = 70/240 (29%), Positives = 117/240 (48%), Gaps = 19/240 (7%)

Query: 15  ETVNGSHQFTVKGYSLAKGMGPGKCLSSDVFTVGGYD---WAIYFYPDGKNPEDGALYVS 71
           + V  S+ +T+  +S  +    G+ + S  F+ G  D   W +   P G + E    Y+S
Sbjct: 3   KVVKFSYMWTINNFSFCREE-MGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKD-YLS 60

Query: 72  VFIALASE-GTDVRALFELTLVDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFF 130
           +++ L S   ++VRA F+ ++++  G+    + S               +G  WG+K+F 
Sbjct: 61  LYLLLVSCPKSEVRAKFKFSILNAKGEETKAMESQ--------RAYRFVQGKDWGFKKFI 112

Query: 131 KRTSL--ETSDYIKDDCLLINCTVGVVRNRLEGPKQYS---IPVPPSDMGQGLKDLLESE 185
           +R  L  E +  + DD L + C V VV++ +    Q +   + VP   +   L  L E+ 
Sbjct: 113 RRGFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPECRLADELGGLWENS 172

Query: 186 IGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKVMLLF 245
              D    V  + F+AHK ILAARSPVF A F   + +   ++V + DVEP +FK M+ F
Sbjct: 173 RFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCF 232
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Length = 145 Back     alignment and structure
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A Length = 145 Back     alignment and structure
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A Length = 160 Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Length = 172 Back     alignment and structure
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A Length = 228 Back     alignment and structure
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A Length = 192 Back     alignment and structure
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A Length = 155 Back     alignment and structure
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A Length = 192 Back     alignment and structure
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A Length = 168 Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Length = 109 Back     alignment and structure
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Length = 256 Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Length = 144 Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Length = 124 Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Length = 120 Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Length = 138 Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Length = 127 Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Length = 121 Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} PDB: 3ohv_A Length = 125 Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Length = 116 Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Length = 119 Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Length = 119 Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Length = 135 Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Length = 116 Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Length = 129 Back     alignment and structure
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} Length = 279 Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} Length = 119 Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query267
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 100.0
3ivv_A145 Speckle-type POZ protein; protein binding, nucleus 99.96
1lb6_A160 TNF receptor-associated factor 6; TRAF6-CD40 compl 99.95
4ghu_A198 TNF receptor-associated factor 3; alpha/beta, inna 99.95
4gjh_A178 TNF receptor-associated factor 5; TRAF domain, imm 99.95
2foj_A155 Ubiquitin carboxyl-terminal hydrolase 7; MATH doma 99.95
2gkw_A192 TNF receptor-associated factor 3; CD40, NF-KB sign 99.94
1ca9_A192 TRAF2, protein (TNF receptor associated factor 2); 99.94
1d00_A168 Tumor necrosis factor receptor associated protein 99.93
1flk_A228 TNF receptor associated factor 3; TNF signaling, T 99.93
2f1z_A 522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 99.89
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 99.83
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 99.82
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 99.81
3b84_A119 Zinc finger and BTB domain-containing protein 48; 99.8
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 99.8
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 99.8
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 99.8
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 99.79
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 99.79
2vpk_A116 Myoneurin; transcription regulation, transcription 99.79
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 99.79
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 99.79
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 99.79
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 99.78
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 99.77
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 99.77
3hve_A 256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 99.72
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 99.71
3i3n_A 279 Kelch-like protein 11; structural genomics, BTB, K 99.69
4gwm_A592 Meprin A subunit beta; mulidomain structure, hydro 99.54
4ajy_C97 Transcription elongation factor B polypeptide 1; E 99.04
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 98.78
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 97.99
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 97.95
2fnj_C96 Transcription elongation factor B polypeptide 1; b 97.82
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 97.56
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 97.02
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 96.67
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 96.1
3drx_A 202 BTB/POZ domain-containing protein KCTD5; golgi, gr 90.24
3kvt_A115 Potassium channel protein SHAW; tetramerization do 87.37
1nn7_A105 Potassium channel KV4.2; teteramerization domain, 80.24
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
Probab=100.00  E-value=2.8e-48  Score=333.95  Aligned_cols=238  Identities=29%  Similarity=0.513  Sum_probs=196.2

Q ss_pred             eeeeeEEEEEEEcccccccCCCCCCeeeeCceeecce---eEEEEEEcCCCCCCCCCCeEEEEEEEcc-CCceEEEEEEE
Q 024486           14 NETVNGSHQFTVKGYSLAKGMGPGKCLSSDVFTVGGY---DWAIYFYPDGKNPEDGALYVSVFIALAS-EGTDVRALFEL   89 (267)
Q Consensus        14 ~~~~~~~~~w~I~nfs~~~~~~~~~~~~S~~F~~gg~---~W~l~~yp~g~~~~~~~~~lsl~l~~~~-~~~~~~~~~~~   89 (267)
                      +++.+++|+|+|+|||.++ .+.++++.||+|.+||+   +|+|++||+|++.+ +++|||+||.|.+ .+|++.|+|+|
T Consensus         2 s~~~~~~~~w~I~nfs~~~-~~~~~~i~S~~F~~gg~~~~~W~i~~yP~G~~~~-~~~~lslyL~~~~~~~~~v~a~~~~   79 (312)
T 3hqi_A            2 SKVVKFSYMWTINNFSFCR-EEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEE-SKDYLSLYLLLVSCPKSEVRAKFKF   79 (312)
T ss_dssp             EEEEEEEEEEEETTGGGCC-CCTTCCEECCCBCC--CCCCEEEEEEETTCCC---CTTEEEEEEEEEECCC-CEEEEEEE
T ss_pred             CceEEEEEEEEEcCcchhh-hcCCCeEeeCCcccCCCCCceEEEEEECCCCCcc-CCCcEEEEEEEcCCCCCcEEEEEEE
Confidence            4678899999999999987 35678999999999985   99999999998743 6789999999987 47999999999


Q ss_pred             EEeeCCCCCceeeeeccccccccCceeecccCcccccccccccccc--ccccCcCCCceEEEEEEEEEeeecC---CCCc
Q 024486           90 TLVDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFFKRTSL--ETSDYIKDDCLLINCTVGVVRNRLE---GPKQ  164 (267)
Q Consensus        90 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~fi~~~~l--~~~~~l~dd~l~i~~~i~v~~~~~~---~~~~  164 (267)
                      +|+|++++.......       ...++|. ++.+|||.+|++|++|  +.+||++||+++|+|+|.|.++...   ....
T Consensus        80 ~l~~~~~~~~~~~~~-------~~~~~F~-~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v~~~~~~~~~~~~~  151 (312)
T 3hqi_A           80 SILNAKGEETKAMES-------QRAYRFV-QGKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTM  151 (312)
T ss_dssp             EEECTTSCEEEEEEC-------SSCEEEC-TTCEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEEEEECCCEECCCCC
T ss_pred             EEEeCCCCccccccc-------CCceeCC-CCCCcCHHHhccHHHhhccccCeecCCEEEEEEEEEEEeccccccccccc
Confidence            999998765432211       1235665 3569999999999999  4579999999999999999975321   1223


Q ss_pred             cCCCCCCCchHHHHHHhhhcCCCccEEEEeCCeEEeeeeEEeeecCHHHHHhhcCcccCCCcceEEecCCCHHHHHHhhh
Q 024486          165 YSIPVPPSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKVMLL  244 (267)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~Dv~i~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~~~~~~~~~~~~~l~  244 (267)
                      ....+|+..+.+++.+++.++.++||+|.++|++|+|||.|||++|+||++||.+++.|.....|.++++++++|+.+|+
T Consensus       152 ~~~~~p~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~  231 (312)
T 3hqi_A          152 NMVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMC  231 (312)
T ss_dssp             SSCCCCCCCHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEECSSCHHHHHHHHH
T ss_pred             cccCCCCchHHHHHHHHHhCCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEecCCCHHHHHHHHH
Confidence            45677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCceecChhhHHHH
Q 024486          245 FSSYSAFISTWKRIEKN  261 (267)
Q Consensus       245 ~~Yt~~~~~~~~~v~~~  261 (267)
                      ||||+++++..+++.++
T Consensus       232 ~iYt~~~~~~~~~~~~l  248 (312)
T 3hqi_A          232 FIYTGKAPNLDKMADDL  248 (312)
T ss_dssp             HHHHSCCTTHHHHHHHH
T ss_pred             hhcCCCCCChHHHHHHH
Confidence            99999999888777643
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A Back     alignment and structure
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A Back     alignment and structure
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A Back     alignment and structure
>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus} Back     alignment and structure
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A Back     alignment and structure
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A Back     alignment and structure
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A Back     alignment and structure
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A Back     alignment and structure
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A* Back     alignment and structure
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Back     alignment and structure
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Back     alignment and structure
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Back     alignment and structure
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Back     alignment and structure
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Back     alignment and structure
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Back     alignment and structure
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 267
d1lb6a_155 b.8.1.1 (A:) TNF receptor associated factor 6 (TRA 6e-26
d1l0aa1155 b.8.1.1 (A:350-504) TNF receptor associated factor 6e-24
d1czya1152 b.8.1.1 (A:350-501) TNF receptor associated factor 8e-23
d2cr2a1146 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {H 2e-22
d1r29a_122 d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB 3e-15
d1buoa_121 d.42.1.1 (A:) Promyelocytic leukaemia zinc finger 6e-13
>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]} Length = 155 Back     information, alignment and structure

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 6 (TRAF6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.6 bits (242), Expect = 6e-26
 Identities = 31/153 (20%), Positives = 53/153 (34%), Gaps = 15/153 (9%)

Query: 15  ETVNGSHQFTVKGYSLAKGM---GPGKCLSSDVFTVG--GYDWAIYFYPDGKNPEDGALY 69
           +  NG + + +  + +            + S  F  G  GY   +  +      +  A Y
Sbjct: 1   QQCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANY 60

Query: 70  VSVFIALASEGTD------VRALFELTLVDQSGKGKHKVHSHFDRALESGPYTLKYRGSM 123
           +S+F+       D       +    LT++DQS     + H     A        +     
Sbjct: 61  ISLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPR 120

Query: 124 ----WGYKRFFKRTSLETSDYIKDDCLLINCTV 152
               +GY  F    +L    +IKDD LL+ C V
Sbjct: 121 NPKGFGYVTFMHLEALRQRTFIKDDTLLVRCEV 153
>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]} Length = 155 Back     information, alignment and structure
>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]} Length = 152 Back     information, alignment and structure
>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]} Length = 146 Back     information, alignment and structure
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122 Back     information, alignment and structure
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query267
d1czya1152 TNF receptor associated factor 2 (TRAF2) {Human (H 99.95
d2cr2a1146 Speckle-type poz protein SPOP {Human (Homo sapiens 99.95
d1lb6a_155 TNF receptor associated factor 6 (TRAF6) {Human (H 99.95
d1l0aa1155 TNF receptor associated factor 3 (TRAF3) {Human (H 99.95
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 99.82
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 99.79
d2c9wc196 Elongin C {Human (Homo sapiens) [TaxId: 9606]} 96.43
d1hv2a_99 Elongin C {Baker's yeast (Saccharomyces cerevisiae 96.32
d1fs1b261 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 95.44
d1nexa272 Centromere DNA-binding protein complex Cbf3 subuni 94.81
d3kvta_103 akv3.1 voltage-gated potassium channel {California 94.33
d1nn7a_105 Potassium channel kv4.2 {Rat (Rattus norvegicus) [ 93.25
d1t1da_100 Shaker potassium channel {California sea hare (Apl 88.42
>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 2 (TRAF2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=9.4e-29  Score=188.60  Aligned_cols=137  Identities=18%  Similarity=0.265  Sum_probs=107.1

Q ss_pred             eEEEEEEEcccccccCC---CCCCeeeeCceeec--ceeEEEEEEcCCCCCCCCCCeEEEEEEEccC------CceEEEE
Q 024486           18 NGSHQFTVKGYSLAKGM---GPGKCLSSDVFTVG--GYDWAIYFYPDGKNPEDGALYVSVFIALASE------GTDVRAL   86 (267)
Q Consensus        18 ~~~~~w~I~nfs~~~~~---~~~~~~~S~~F~~g--g~~W~l~~yp~g~~~~~~~~~lsl~l~~~~~------~~~~~~~   86 (267)
                      +|+|+|+|+|||.+++.   +.+..+.||+|.+|  |++|+|++||+|.+.+ +++|+||||++.++      .|++.++
T Consensus         2 ~g~f~W~I~nFs~l~~~~~~~~~~~~~Sp~F~~g~~Gy~w~l~~yP~G~~~~-~~~~lSlyL~l~~~~~d~~~~~~~~~~   80 (152)
T d1czya1           2 DGVFIWKISDFPRKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTG-RGTHLSLFFVVMKGPNDALLRWPFNQK   80 (152)
T ss_dssp             SSEEEEEECSHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCGGG-TTTEEEEEEEEECCTTGGGSCSSCCCC
T ss_pred             CCEEEEEECCcHHHHHhhhcCCCceEECcCEEcCCCCeEEEEEEEeCCCCCC-CCCEEEEEEEEccCCcCcccccceeeE
Confidence            58999999999988753   34568999999998  9999999999998754 57899999999763      5999999


Q ss_pred             EEEEEeeCCCCCceeeeeccccccccCceeecccCccccccccccccccc-cccCcCCCceEEEEEEEEE
Q 024486           87 FELTLVDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFFKRTSLE-TSDYIKDDCLLINCTVGVV  155 (267)
Q Consensus        87 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~fi~~~~l~-~~~~l~dd~l~i~~~i~v~  155 (267)
                      |+|+|+||.+....................+...+.+|||.+|+++++|+ ++|||.||+|+|+|+|.|.
T Consensus        81 ~~~~l~d~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~G~~~fi~~~~L~~~~gfl~dD~l~I~~~V~v~  150 (152)
T d1czya1          81 VTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAKNSYVRDDAIFIKAIVDLT  150 (152)
T ss_dssp             EEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETCCCCCSTTTSCSSCEEEEEEECCT
T ss_pred             EEEEEEcCCCCccceeeeccccccccccCCCcccccccchhhEEEHHHhcccCCcEeCCEEEEEEEEEec
Confidence            99999999866543222211111111122234456799999999999995 5799999999999999764
>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure