Citrus Sinensis ID: 024513

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260------

MCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLGWPVGGYPGPQGPYYCGVGADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP

cccccccccccccccHHHHHHHHHccccccccccEEEccccEEEEEcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccEEEEEcccccccccEEEEEcccccccccHHHHHHHHHHHHHHHcccEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEcccccccEEEcccccccccEEEEEccccccccHHHHHHHHHHHHccccc

cccccccccccccccHHHHHHHHHHcHHHHcccccccEEEEEEEccccccccccccccccccccccEEEccccccEcHHHHHHHHHHHHHHccEEEcccccEEccccEEEEcccccccccHHHHHHHHHHHHHHHHHcccEEEEcccccccccccccccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEcccccEEEEcccHHHcccccccccccccccccHHHHHHHHHHEEcccc

mcdaytpagepiptnkrfnaakvfghpdvvaeepwygiEQEYTLLQkdinwplgwpvggypgpqgpyycgvgadkalgrdiVNSHYKACLYAGinisgingevmpgqwefqvgpcvgissgDQLWMARYILERITEIAGVvlsfdpkpikgdwngagahanystksmrndggIDVIKKAIEKLGKRHGEHIaaygegnerrltgrhetadintfswgvanrgasirvgrdtekegkgyfedrrpasnmdpyVVTSMIAETTILWKP

mcdaytpagepiptnkrfnaAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLGWPVGGYPGPQGPYYCGVGADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAhanystksmrndggIDVIKKAIEKLGKRHGEHIaaygegnerrltGRHETAdintfswgvanrgasirvgrdtekegkgyfedrrpasnmdpyvVTSMIAETTILWKP

MCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLgwpvggypgpqgpyycgvgADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP

*****************FNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLGWPVGGYPGPQGPYYCGVGADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYST****NDGGIDVIKKAIEKLGKRHGEHIAAYGEG***RLTGRHETADINTFSWGVANRGASIRV**********************PYVVTSMIAETTILW**

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		266	2.2.26 [Sep-21-2011]
P32289		356	Glutamine synthetase nodu	N/A	no	1.0	0.747	0.917	1e-145
P04078		356	Glutamine synthetase cyto	N/A	no	1.0	0.747	0.902	1e-143
O82560		356	Glutamine synthetase cyto	yes	no	1.0	0.747	0.890	1e-143
P04770		356	Glutamine synthetase PR-1	N/A	no	1.0	0.747	0.890	1e-142
P51119		356	Glutamine synthetase cyto	no	no	1.0	0.747	0.890	1e-142
Q42899		356	Glutamine synthetase cyto	N/A	no	1.0	0.747	0.887	1e-142
P51118		356	Glutamine synthetase cyto	no	no	1.0	0.747	0.890	1e-142
P00965		356	Glutamine synthetase N-1	N/A	no	1.0	0.747	0.883	1e-141
O04867		356	Glutamine synthetase OS=A	N/A	no	1.0	0.747	0.887	1e-141
P08282		355	Glutamine synthetase nodu	N/A	no	1.0	0.749	0.887	1e-140

>sp\|P32289\|GLNA_VIGAC Glutamine synthetase nodule isozyme OS=Vigna aconitifolia PE=2 SV=1	Back alignment and function desciption

 Score =  515 bits (1327), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 244/266 (91%), Positives = 255/266 (95%)

Query: 1   MCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLGWPVGGY 60
           MCDAYTPAGEPIPTNKR NAAK+F HPDVVAEEPWYGIEQEYTLLQKD+NWPLGWPVGG+
Sbjct: 91  MCDAYTPAGEPIPTNKRHNAAKIFSHPDVVAEEPWYGIEQEYTLLQKDVNWPLGWPVGGF 150

Query: 61  PGPQGPYYCGVGADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISS 120
           PGPQGPYYCG GADKA GRDIV++HYKACLYAGINISGINGEVMPGQWEFQVGP VGIS+
Sbjct: 151 PGPQGPYYCGAGADKAFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISA 210

Query: 121 GDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAI 180
           GD+LW+ARYILERITEIAGVVLSFDPKPIKGDWNGAGAH NYSTK+MRNDGG +VIK AI
Sbjct: 211 GDELWVARYILERITEIAGVVLSFDPKPIKGDWNGAGAHTNYSTKTMRNDGGYEVIKSAI 270

Query: 181 EKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFE 240
           EKLGKRH EHIAAYGEGNERRLTGRHETADINTF WGVANRGASIRVGRDTEK GKGYFE
Sbjct: 271 EKLGKRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKAGKGYFE 330

Query: 241 DRRPASNMDPYVVTSMIAETTILWKP 266
           DRRPASNMDPYVVTSMIA+TTILWKP
Sbjct: 331 DRRPASNMDPYVVTSMIADTTILWKP 356

Vigna aconitifolia (taxid: 3918)
EC: 6EC: .EC: 3EC: .EC: 1EC: .EC: 2

>sp\|P04078\|GLNA1_MEDSA Glutamine synthetase cytosolic isozyme OS=Medicago sativa PE=2 SV=1	Back alignment and function description

>sp\|O82560\|GLNA2_SOYBN Glutamine synthetase cytosolic isozyme 2 OS=Glycine max PE=2 SV=1	Back alignment and function description

>sp\|P04770\|GLNA1_PHAVU Glutamine synthetase PR-1 OS=Phaseolus vulgaris PE=2 SV=1	Back alignment and function description

>sp\|P51119\|GLNA2_VITVI Glutamine synthetase cytosolic isozyme 2 OS=Vitis vinifera GN=GS1-2 PE=2 SV=1	Back alignment and function description

>sp\|Q42899\|GLNA1_LOTJA Glutamine synthetase cytosolic isozyme OS=Lotus japonicus GN=GLN1 PE=2 SV=2	Back alignment and function description

>sp\|P51118\|GLNA1_VITVI Glutamine synthetase cytosolic isozyme 1 OS=Vitis vinifera GN=GS1-1 PE=2 SV=1	Back alignment and function description

>sp\|P00965\|GLNA3_PHAVU Glutamine synthetase N-1 OS=Phaseolus vulgaris GN=Gln-gamma PE=2 SV=2	Back alignment and function description

>sp\|O04867\|GLNA1_ALNGL Glutamine synthetase OS=Alnus glutinosa GN=GLN1 PE=2 SV=1	Back alignment and function description

>sp\|P08282\|GLNA1_PEA Glutamine synthetase nodule isozyme OS=Pisum sativum GN=GS1 PE=2 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		266
211906462		356	glutamine synthase [Gossypium hirsutum]	1.0	0.747	0.921	1e-145
359473032		368	PREDICTED: glutamine synthetase nodule i	1.0	0.722	0.913	1e-144
147768273		356	hypothetical protein VITISV_041911 [Viti	1.0	0.747	0.913	1e-144
417060		356	RecName: Full=Glutamine synthetase nodul	1.0	0.747	0.917	1e-144
449436357		356	PREDICTED: glutamine synthetase nodule i	1.0	0.747	0.909	1e-143
42733460		356	glutamine synthetase [Camellia sinensis]	1.0	0.747	0.902	1e-142
225451379		356	PREDICTED: glutamine synthetase cytosoli	1.0	0.747	0.902	1e-142
47933888		355	glutamine synthetase [Elaeagnus umbellat	1.0	0.749	0.902	1e-141
14161136		356	glutamine synthetase [Vitis vinifera]	1.0	0.747	0.906	1e-141
224096598		356	predicted protein [Populus trichocarpa]	1.0	0.747	0.890	1e-141

>gi\|211906462\|gb\|ACJ11724.1\| glutamine synthase [Gossypium hirsutum]	Back alignment and taxonomy information

 Score =  518 bits (1335), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 245/266 (92%), Positives = 257/266 (96%)

Query: 1   MCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLGWPVGGY 60
           MCDAYTPAGEPIPTNKRFNAAK+F HPDVVAEEPWYGIEQEYTLLQKD  WPLGWPVGG+
Sbjct: 91  MCDAYTPAGEPIPTNKRFNAAKIFSHPDVVAEEPWYGIEQEYTLLQKDTKWPLGWPVGGF 150

Query: 61  PGPQGPYYCGVGADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISS 120
           PGPQGPYYCGVGADK+ GRDIV+SHYKACLYAG+NISGINGEVMPGQWEFQVGP VGIS+
Sbjct: 151 PGPQGPYYCGVGADKSFGRDIVDSHYKACLYAGVNISGINGEVMPGQWEFQVGPSVGISA 210

Query: 121 GDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAI 180
           GDQ+W+ARYILERITEIAGVVLSFDPKPI GDWNGAGAH NYSTKSMRNDGGI+VIKKAI
Sbjct: 211 GDQIWIARYILERITEIAGVVLSFDPKPIPGDWNGAGAHTNYSTKSMRNDGGINVIKKAI 270

Query: 181 EKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFE 240
           EKLG RH EHIAAYGEGNERRLTGRHETADIN+FSWGVANRGASIRVGRDTEK+GKGYFE
Sbjct: 271 EKLGLRHKEHIAAYGEGNERRLTGRHETADINSFSWGVANRGASIRVGRDTEKDGKGYFE 330

Query: 241 DRRPASNMDPYVVTSMIAETTILWKP 266
           DRRPASNMDPYVVTSMIAETTI+WKP
Sbjct: 331 DRRPASNMDPYVVTSMIAETTIIWKP 356

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359473032\|ref\|XP_003631235.1\| PREDICTED: glutamine synthetase nodule isozyme isoform 2 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147768273\|emb\|CAN62668.1\| hypothetical protein VITISV_041911 [Vitis vinifera] gi\|297737933\|emb\|CBI27134.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|417060\|sp\|P32289.1\|GLNA_VIGAC RecName: Full=Glutamine synthetase nodule isozyme; Short=GS; AltName: Full=Glutamate--ammonia ligase gi\|170637\|gb\|AAA34239.1\| glutamine synthetase [Vigna aconitifolia] gi\|1094850\|prf\|\|2106409A Gln synthetase	Back alignment and taxonomy information

>gi\|449436357\|ref\|XP_004135959.1\| PREDICTED: glutamine synthetase nodule isozyme-like [Cucumis sativus] gi\|449488792\|ref\|XP_004158173.1\| PREDICTED: glutamine synthetase nodule isozyme-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|42733460\|dbj\|BAD11327.1\| glutamine synthetase [Camellia sinensis]	Back alignment and taxonomy information

>gi\|225451379\|ref\|XP_002263856.1\| PREDICTED: glutamine synthetase cytosolic isozyme 2 [Vitis vinifera] gi\|296087096\|emb\|CBI33470.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|47933888\|gb\|AAT39510.1\| glutamine synthetase [Elaeagnus umbellata]	Back alignment and taxonomy information

>gi\|14161136\|emb\|CAC39216.1\| glutamine synthetase [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224096598\|ref\|XP_002310666.1\| predicted protein [Populus trichocarpa] gi\|118483322\|gb\|ABK93563.1\| unknown [Populus trichocarpa] gi\|222853569\|gb\|EEE91116.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		266
TAIR\|locus:2151739		356	GSR 1 "glutamine synthase clon	1.0	0.747	0.800	4.9e-117
TAIR\|locus:2088580		354	GLN1.3 "glutamine synthetase 1	0.988	0.742	0.798	7.9e-117
TAIR\|locus:2174175		356	GLN1;4 "glutamine synthetase 1	1.0	0.747	0.800	3.9e-115
TAIR\|locus:2198080		353	GLN1;5 "glutamine synthetase 1	0.988	0.745	0.737	9e-109
TAIR\|locus:2165897		430	GS2 "glutamine synthetase 2" [	1.0	0.618	0.699	1.6e-102
SGD\|S000006239		370	GLN1 "Glutamine synthetase (GS	0.936	0.672	0.569	9.3e-75
FB\|FBgn0001145		369	Gs2 "Glutamine synthetase 2" [	0.977	0.704	0.565	5.1e-74
ASPGD\|ASPL0000016342		357	glnA [Emericella nidulans (tax	0.962	0.717	0.551	8.4e-74
CGD\|CAL0001010		373	GLN1 [Candida albicans (taxid:	0.932	0.664	0.561	2.8e-73
UNIPROTKB\|G4NG12		358	MGG_14279 "Glutamine synthetas	0.928	0.689	0.574	4.6e-73

TAIR\|locus:2151739 GSR 1 "glutamine synthase clone R1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1153 (410.9 bits), Expect = 4.9e-117, P = 4.9e-117
 Identities = 213/266 (80%), Positives = 229/266 (86%)

Query:     1 MCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXX 60
             MCDAYTPAGEPIPTNKR  AAKVF +PDV AE PWYGIEQEYTLLQKD+ WP+       
Sbjct:    91 MCDAYTPAGEPIPTNKRHAAAKVFSNPDVAAEVPWYGIEQEYTLLQKDVKWPVGWPIGGY 150

Query:    61 XXXXXXXXXXXXADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISS 120
                         ADK+ GRD+V+SHYKACLYAGINISGINGEVMPGQWEFQVGP VGIS+
Sbjct:   151 PGPQGPYYCGIGADKSFGRDVVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISA 210

Query:   121 GDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAI 180
              D++W+ARYILERITEIAGVV+SFDPKPI GDWNGAGAH NYSTKSMR +GG ++IKKAI
Sbjct:   211 ADEIWVARYILERITEIAGVVVSFDPKPIPGDWNGAGAHCNYSTKSMREEGGYEIIKKAI 270

Query:   181 EKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFE 240
             +KLG RH EHIAAYGEGNERRLTG HETADINTF WGVANRGASIRVGRDTEKEGKGYFE
Sbjct:   271 DKLGLRHKEHIAAYGEGNERRLTGHHETADINTFLWGVANRGASIRVGRDTEKEGKGYFE 330

Query:   241 DRRPASNMDPYVVTSMIAETTILWKP 266
             DRRPASNMDPY+VTSMIAETTILW P
Sbjct:   331 DRRPASNMDPYIVTSMIAETTILWNP 356

GO:0003824 "catalytic activity" evidence=IEA

GO:0004356 "glutamate-ammonia ligase activity" evidence=IEA;ISS;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005829 "cytosol" evidence=TAS

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0042128 "nitrate assimilation" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0010150 "leaf senescence" evidence=IEP

GO:0005507 "copper ion binding" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009749 "response to glucose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

TAIR\|locus:2088580 GLN1.3 "glutamine synthetase 1.3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2174175 GLN1;4 "glutamine synthetase 1;4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2198080 GLN1;5 "glutamine synthetase 1;5" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2165897 GS2 "glutamine synthetase 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

SGD\|S000006239 GLN1 "Glutamine synthetase (GS)" [Saccharomyces cerevisiae (taxid:4932)]	Back alignment and assigned GO terms

FB\|FBgn0001145 Gs2 "Glutamine synthetase 2" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000016342 glnA [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

CGD\|CAL0001010 GLN1 [Candida albicans (taxid:5476)]	Back alignment and assigned GO terms

UNIPROTKB\|G4NG12 MGG_14279 "Glutamine synthetase" [Magnaporthe oryzae 70-15 (taxid:242507)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q43785	GLNA3_MEDSA	6, ., 3, ., 1, ., 2	0.8684	1.0	0.7471	N/A	no
Q42624	GLNAC_BRANA	6, ., 3, ., 1, ., 2	0.7781	1.0	0.6214	N/A	no
P14656	GLN11_ORYSJ	6, ., 3, ., 1, ., 2	0.8721	1.0	0.7471	yes	no
P04771	GLNA2_PHAVU	6, ., 3, ., 1, ., 2	0.8721	1.0	0.7471	N/A	no
P08282	GLNA1_PEA	6, ., 3, ., 1, ., 2	0.8872	1.0	0.7492	N/A	no
P15102	GLNA4_PHAVU	6, ., 3, ., 1, ., 2	0.7969	1.0	0.6200	N/A	no
Q9LVI8	GLN13_ARATH	6, ., 3, ., 1, ., 2	0.8707	0.9887	0.7429	yes	no
Q43066	GLNA4_PEA	6, ., 3, ., 1, ., 2	0.8716	0.9962	0.7422	N/A	no
P25462	GLNAC_MAIZE	6, ., 3, ., 1, ., 2	0.7593	1.0	0.6288	N/A	no
P04078	GLNA1_MEDSA	6, ., 3, ., 1, ., 2	0.9022	1.0	0.7471	N/A	no
Q06378	GLNA3_HORVU	6, ., 3, ., 1, ., 2	0.8421	1.0	0.7471	N/A	no
Q6FMT6	GLNA_CANGA	6, ., 3, ., 1, ., 2	0.6374	0.9661	0.6908	yes	no
P14636	GLNA3_LUPAN	6, ., 3, ., 1, ., 2	0.8444	0.8458	0.7142	N/A	no
P23712	GLNA_LACSA	6, ., 3, ., 1, ., 2	0.8636	0.9924	0.7374	N/A	no
O82560	GLNA2_SOYBN	6, ., 3, ., 1, ., 2	0.8909	1.0	0.7471	yes	no
P38562	GLNA4_MAIZE	6, ., 3, ., 1, ., 2	0.8496	0.9962	0.7464	N/A	no
P38563	GLNA5_MAIZE	6, ., 3, ., 1, ., 2	0.8641	0.9962	0.7422	N/A	no
O22504	GLNA1_DAUCA	6, ., 3, ., 1, ., 2	0.8403	0.9887	0.7471	N/A	no
P38561	GLNA3_MAIZE	6, ., 3, ., 1, ., 2	0.8533	1.0	0.7471	N/A	no
P00965	GLNA3_PHAVU	6, ., 3, ., 1, ., 2	0.8834	1.0	0.7471	N/A	no
P38560	GLNA2_MAIZE	6, ., 3, ., 1, ., 2	0.8270	0.9962	0.7201	N/A	no
O22506	GLNA2_DAUCA	6, ., 3, ., 1, ., 2	0.7669	1.0	0.6157	N/A	no
P13564	GLNA2_HORVU	6, ., 3, ., 1, ., 2	0.7631	1.0	0.6129	N/A	no
P52782	GLNA_LUPLU	6, ., 3, ., 1, ., 2	0.8935	0.9887	0.7450	N/A	no
P52783	GLNA_PINSY	6, ., 3, ., 1, ., 2	0.8270	1.0	0.7450	N/A	no
P20478	GLNA2_DROME	6, ., 3, ., 1, ., 2	0.6254	0.9774	0.7046	yes	no
Q9XQ94	GLNA2_MEDSA	6, ., 3, ., 1, ., 2	0.7857	1.0	0.6214	N/A	no
Q42899	GLNA1_LOTJA	6, ., 3, ., 1, ., 2	0.8872	1.0	0.7471	N/A	no
P38559	GLNA1_MAIZE	6, ., 3, ., 1, ., 2	0.8712	0.9924	0.7394	N/A	no
P12424	GLNA_NICPL	6, ., 3, ., 1, ., 2	0.8566	0.9962	0.7443	N/A	no
P32289	GLNA_VIGAC	6, ., 3, ., 1, ., 2	0.9172	1.0	0.7471	N/A	no
P07694	GLNA3_PEA	6, ., 3, ., 1, ., 2	0.8754	0.9962	0.7422	N/A	no
O04867	GLNA1_ALNGL	6, ., 3, ., 1, ., 2	0.8872	1.0	0.7471	N/A	no
P04770	GLNA1_PHAVU	6, ., 3, ., 1, ., 2	0.8909	1.0	0.7471	N/A	no
P08281	GLNA2_PEA	6, ., 3, ., 1, ., 2	0.7781	1.0	0.6186	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.1	0.976
3rd Layer	6.3.1.2	0.991

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		266
PLN02284		354	PLN02284, PLN02284, glutamine synthetase	0.0
PLN03036		432	PLN03036, PLN03036, glutamine synthetase; Provisio	1e-177
pfam00120		259	pfam00120, Gln-synt_C, Glutamine synthetase, catal	1e-83
COG0174		443	COG0174, GlnA, Glutamine synthetase [Amino acid tr	1e-53
TIGR00653		459	TIGR00653, GlnA, glutamine synthetase, type I	1e-08
TIGR03105		435	TIGR03105, gln_synth_III, glutamine synthetase, ty	2e-04

>gnl\|CDD\|177922 PLN02284, PLN02284, glutamine synthetase	Back alignment and domain information

 Score =  595 bits (1535), Expect = 0.0
 Identities = 242/264 (91%), Positives = 251/264 (95%)

Query: 1   MCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLGWPVGGY 60
           MCDAYTPAGEPIPTNKR  AAK+F HPDV AEEPWYGIEQEYTLLQKD+ WPLGWPVGGY
Sbjct: 91  MCDAYTPAGEPIPTNKRAKAAKIFSHPDVAAEEPWYGIEQEYTLLQKDVKWPLGWPVGGY 150

Query: 61  PGPQGPYYCGVGADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISS 120
           PGPQGPYYCGVGADKA GRDIV++HYKACLYAGINISGINGEVMPGQWEFQVGP VGIS+
Sbjct: 151 PGPQGPYYCGVGADKAFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPVVGISA 210

Query: 121 GDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAI 180
           GDQLW+ARYILERITEIAGVV+SFDPKPI GDWNGAGAH NYSTKSMR DGG +VIKKAI
Sbjct: 211 GDQLWVARYILERITEIAGVVVSFDPKPIPGDWNGAGAHTNYSTKSMREDGGYEVIKKAI 270

Query: 181 EKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFE 240
           EKLG RH EHIAAYGEGNERRLTG+HETADINTFSWGVANRGASIRVGRDTEKEGKGYFE
Sbjct: 271 EKLGLRHKEHIAAYGEGNERRLTGKHETADINTFSWGVANRGASIRVGRDTEKEGKGYFE 330

Query: 241 DRRPASNMDPYVVTSMIAETTILW 264
           DRRPASNMDPYVVTSMIAETTILW
Sbjct: 331 DRRPASNMDPYVVTSMIAETTILW 354

Length = 354

>gnl\|CDD\|178603 PLN03036, PLN03036, glutamine synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|215731 pfam00120, Gln-synt_C, Glutamine synthetase, catalytic domain	Back alignment and domain information

>gnl\|CDD\|223252 COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|233073 TIGR00653, GlnA, glutamine synthetase, type I	Back alignment and domain information

>gnl\|CDD\|234109 TIGR03105, gln_synth_III, glutamine synthetase, type III	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		266
PLN02284		354	glutamine synthetase	100.0
COG0174		443	GlnA Glutamine synthetase [Amino acid transport an	100.0
PLN03036		432	glutamine synthetase; Provisional	100.0
TIGR00653		460	GlnA glutamine synthetase, type I. Alternate name:	100.0
PRK09469		469	glnA glutamine synthetase; Provisional	100.0
TIGR03105		435	gln_synth_III glutamine synthetase, type III. This	100.0
PF00120		259	Gln-synt_C: Glutamine synthetase, catalytic domain	100.0
KOG0683		380	consensus Glutamine synthetase [Amino acid transpo	100.0
COG3968		724	Uncharacterized protein related to glutamine synth	99.79
TIGR02050		287	gshA_cyan_rel uncharacterized enzyme. This family	98.91
PRK13517		373	carboxylate-amine ligase; Provisional	98.84
PRK13515		371	carboxylate-amine ligase; Provisional	98.75
PRK13516		373	gamma-glutamyl:cysteine ligase; Provisional	98.66
PRK13518		357	carboxylate-amine ligase; Provisional	98.43
TIGR02048		376	gshA_cyano glutamate--cysteine ligase, cyanobacter	98.3
PLN02611		482	glutamate--cysteine ligase	98.25
PF04107		288	GCS2: Glutamate-cysteine ligase family 2(GCS2); In	97.98
TIGR01436		446	glu_cys_lig_pln glutamate--cysteine ligase, plant	97.78
COG2170		369	Uncharacterized conserved protein [Function unknow	97.61
TIGR03444		390	gshA_related glutamate--cysteine ligase family pro	96.84
KOG0683		380	consensus Glutamine synthetase [Amino acid transpo	94.8
cd04869		81	ACT_GcvR_2 ACT domains that comprise the Glycine C	90.44
PF13740		76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	87.41
PF12224		252	Amidoligase_2: Putative amidoligase enzyme; InterP	85.96
PF06877		104	RraB: Regulator of ribonuclease activity B; InterP	85.77
TIGR02778		245	ligD_pol DNA polymerase LigD, polymerase domain. D	85.7
PF14395		261	COOH-NH2_lig: Phage phiEco32-like COOH.NH2 ligase-	84.27
cd04862		227	PaeLigD_Pol_like PaeLigD_Pol_like: Polymerase (Pol	82.8
cd04872		88	ACT_1ZPV ACT domain proteins similar to the yet un	82.64
COG3572		456	GshA Gamma-glutamylcysteine synthetase [Coenzyme m	82.24
PRK02471		752	bifunctional glutamate--cysteine ligase/glutathion	81.48
cd04870		75	ACT_PSP_1 CT domains found N-terminal of phosphose	81.37
PRK00194		90	hypothetical protein; Validated	81.3
cd04861		227	LigD_Pol_like LigD_Pol_like: Polymerase (Pol) doma	80.93
cd04864		228	LigD_Pol_like_1 LigD_Pol_like_1: Polymerase (Pol)	80.17
cd04863		231	MtLigD_Pol_like MtLigD_Pol_like: Polymerase (Pol)	80.03

>PLN02284 glutamine synthetase	Back alignment and domain information

Probab=100.00  E-value=5.1e-81  Score=580.95  Aligned_cols=264  Identities=92%  Similarity=1.544  Sum_probs=237.3

Q ss_pred             CceeeCCCCCCCCCChHHHHHHHHccccccCCcceEeeeeeEEEecCCCCCCCCCCCCCCCCCCCCCccccccchhhHHH
Q 024513            1 MCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLGWPVGGYPGPQGPYYCGVGADKALGRD   80 (266)
Q Consensus         1 ~~d~~~~~g~p~~~~pR~~L~~~~~~~~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (266)
                      +||++++||+|++.|||.+|||+++++++.|+++++|+|+|||||+.+..++.|++..+.+.++++||+..+.+..+.++
T Consensus        91 lcdv~~~dG~p~~~dPR~vL~r~~~~~~~~g~~~~~G~E~EF~lf~~~~~~~~g~~~~~~~~~~~~y~~~~~~~~~~~~~  170 (354)
T PLN02284         91 MCDAYTPAGEPIPTNKRAKAAKIFSHPDVAAEEPWYGIEQEYTLLQKDVKWPLGWPVGGYPGPQGPYYCGVGADKAFGRD  170 (354)
T ss_pred             EEEEECCCCCCCCCCHHHHHHHHHHHHHhcCCceeEEeceEEEEEecCCcccCCCCCCCcccCCCCcccCcchhhHHHHH
Confidence            69999999999999999999999999999999999999999999986543334554434566778888777765556789


Q ss_pred             HHHHHHHHHHHcCceeeeeeCCCCCCceeEecCCCchhHHHHHHHHHHHHHHHHHHHcCceEEEcccCCCCCCCCceeeE
Q 024513           81 IVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHA  160 (266)
Q Consensus        81 ~~~~l~~~l~~~Gi~ve~~~~E~gpGQ~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~hGl~atFmpKP~~~d~~GsG~H~  160 (266)
                      ++++|+++|+++||+|+++|||+|||||||++.|+++|++||++++||++||+||++||++|||||||+.++++|||||+
T Consensus       171 ~~~~l~~~l~~~Gi~ve~~h~E~apGQ~Ei~l~~~d~l~aAD~~~~~K~vvk~vA~~~Gl~ATFMPKP~~~~~~GSGmH~  250 (354)
T PLN02284        171 IVDAHYKACLYAGINISGINGEVMPGQWEFQVGPVVGISAGDQLWVARYILERITEIAGVVVSFDPKPIPGDWNGAGAHT  250 (354)
T ss_pred             HHHHHHHHHHHCCCCeEEEEcCcCCCceEEEecCCcHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCCCCCCCccCccee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999875579999999


Q ss_pred             eEeccccCCCCchHHHHHHHHHHHHHHHHHHhhhhccccccCCCCCCCCCccceeeccCCCCceEEeCcCCCCCCCceeE
Q 024513          161 NYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFE  240 (266)
Q Consensus       161 h~Sl~~~~~~~g~~~~~~~iaGl~L~h~~al~a~~~nsYkRl~~~~~a~~p~~~~WG~~NR~a~iRvp~~~~~~~~~riE  240 (266)
                      |+|||+.++++|.+.++++++|+.|+|+++|+||++||||||+|++|||.+++++||.+||+++||||.....++++|||
T Consensus       251 H~SL~~~~~~gg~~~~~~~l~~~~l~h~~~l~a~~~NSYkRL~p~~eap~~~~~~wg~~NRsa~iRIP~~~~~~~~~riE  330 (354)
T PLN02284        251 NYSTKSMREDGGYEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGKHETADINTFSWGVANRGASIRVGRDTEKEGKGYFE  330 (354)
T ss_pred             ecChhhcccCCcHHHHHHHHHHHHHHHHHHhhhhhcCcHhhcCCCccCcccccceeecCCCceeEEECCCCCCCCCCEEE
Confidence            99999854346778889999999999999999999999999999999997679999999999999999765333467999


Q ss_pred             eCCCCCCCCHHHHHHHHHHHhhcC
Q 024513          241 DRRPASNMDPYVVTSMIAETTILW  264 (266)
Q Consensus       241 ~R~~da~aNPYLalAailaAgl~g  264 (266)
                      +|+||++|||||++|++|++.+.+
T Consensus       331 ~R~pd~~aNPYLa~aaila~~~~~  354 (354)
T PLN02284        331 DRRPASNMDPYVVTSMIAETTILW  354 (354)
T ss_pred             EcCCCCCCCHHHHHHHHHHHHhcC
Confidence            999999999999999999998863

>COG0174 GlnA Glutamine synthetase [Amino acid transport and metabolism]	Back alignment and domain information

>PLN03036 glutamine synthetase; Provisional	Back alignment and domain information

>TIGR00653 GlnA glutamine synthetase, type I	Back alignment and domain information

>PRK09469 glnA glutamine synthetase; Provisional	Back alignment and domain information

>TIGR03105 gln_synth_III glutamine synthetase, type III	Back alignment and domain information

>PF00120 Gln-synt_C: Glutamine synthetase, catalytic domain; InterPro: IPR008146 Glutamine synthetase (6	Back alignment and domain information

>KOG0683 consensus Glutamine synthetase [Amino acid transport and metabolism]	Back alignment and domain information

>COG3968 Uncharacterized protein related to glutamine synthetase [General function prediction only]	Back alignment and domain information

>TIGR02050 gshA_cyan_rel uncharacterized enzyme	Back alignment and domain information

>PRK13517 carboxylate-amine ligase; Provisional	Back alignment and domain information

>PRK13515 carboxylate-amine ligase; Provisional	Back alignment and domain information

>PRK13516 gamma-glutamyl:cysteine ligase; Provisional	Back alignment and domain information

>PRK13518 carboxylate-amine ligase; Provisional	Back alignment and domain information

>TIGR02048 gshA_cyano glutamate--cysteine ligase, cyanobacterial, putative	Back alignment and domain information

>PLN02611 glutamate--cysteine ligase	Back alignment and domain information

>PF04107 GCS2: Glutamate-cysteine ligase family 2(GCS2); InterPro: IPR006336 Also known as gamma-glutamylcysteine synthetase and gamma-ECS (6	Back alignment and domain information

>TIGR01436 glu_cys_lig_pln glutamate--cysteine ligase, plant type	Back alignment and domain information

>COG2170 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>TIGR03444 gshA_related glutamate--cysteine ligase family protein	Back alignment and domain information

>KOG0683 consensus Glutamine synthetase [Amino acid transport and metabolism]	Back alignment and domain information

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains	Back alignment and domain information

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A	Back alignment and domain information

>PF12224 Amidoligase_2: Putative amidoligase enzyme; InterPro: IPR022025 This family of proteins are likely to act as amidoligase enzymes [] Protein in this family are found in conserved gene neighbourhoods encoding a glutamine amidotransferase-like thiol peptidase (in proteobacteria) or an Aig2 family cyclotransferase protein (in firmicutes) []	Back alignment and domain information

>PF06877 RraB: Regulator of ribonuclease activity B; InterPro: IPR009671 This entry occurs in several hypothetical bacterial proteins of around 120 residues in length	Back alignment and domain information

>TIGR02778 ligD_pol DNA polymerase LigD, polymerase domain	Back alignment and domain information

>PF14395 COOH-NH2_lig: Phage phiEco32-like COOH	Back alignment and domain information

>cd04862 PaeLigD_Pol_like PaeLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD	Back alignment and domain information

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein	Back alignment and domain information

>COG3572 GshA Gamma-glutamylcysteine synthetase [Coenzyme metabolism]	Back alignment and domain information

>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional	Back alignment and domain information

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)	Back alignment and domain information

>PRK00194 hypothetical protein; Validated	Back alignment and domain information

>cd04861 LigD_Pol_like LigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD	Back alignment and domain information

>cd04864 LigD_Pol_like_1 LigD_Pol_like_1: Polymerase (Pol) domain of mostly bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 1	Back alignment and domain information

>cd04863 MtLigD_Pol_like MtLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Mycobacterium tuberculosis (Mt)LigD	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		266
2d3a_A		356	Crystal Structure Of The Maize Glutamine Synthetase		1e-124
3fky_A		370	Crystal Structure Of The Glutamine Synthetase Gln1d		5e-79
2uu7_A		381	Crystal Structure Of Apo Glutamine Synthetase From		7e-75
2ojw_A		384	Crystal Structure Of Human Glutamine Synthetase In		7e-75

>pdb|2D3A|A Chain A, Crystal Structure Of The Maize Glutamine Synthetase Complexed With Adp And Methionine Sulfoximine Phosphate Length = 356

Back alignment and structure

Iteration: 1

Score = 441 bits (1135), Expect = e-124, Method: Compositional matrix adjust. Identities = 212/266 (79%), Positives = 231/266 (86%) Query: 1 MCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXX 60 MCD YTPAGEPIPTNKR++AAK+F P+V AEEPWYGIEQEYTLLQKD NWPL Sbjct: 91 MCDCYTPAGEPIPTNKRYSAAKIFSSPEVAAEEPWYGIEQEYTLLQKDTNWPLGWPIGGF 150 Query: 61 XXXXXXXXXXXXADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISS 120 A+K+ GRDIV++HYKACLYAGINISGINGEVMPGQWEFQVGP VGISS Sbjct: 151 PGPQGPYYCGIGAEKSFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISS 210 Query: 121 GDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAI 180 GDQ+W+ARYILERITEIAGVV++FDPKPI GDWNGAGAH NYST+SMR +GG +VIK AI Sbjct: 211 GDQVWVARYILERITEIAGVVVTFDPKPIPGDWNGAGAHTNYSTESMRKEGGYEVIKAAI 270 Query: 181 EKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFE 240 EKL RH EHIAAYGEGNERRLTGRHETADINTFSWGVANRGAS+RVGR+TE+ GKGYFE Sbjct: 271 EKLKLRHKEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASVRVGRETEQNGKGYFE 330 Query: 241 DRRPASNMDPYVVTSMIAETTILWKP 266 DRRPASNMDPYVVTSMIAETTI+WKP Sbjct: 331 DRRPASNMDPYVVTSMIAETTIVWKP 356

PyMOL of 2d3a

>pdb|3FKY|A Chain A, Crystal Structure Of The Glutamine Synthetase Gln1deltan18 From The Yeast Saccharomyces Cerevisiae Length = 370

Back alignment and structure

>pdb|2UU7|A Chain A, Crystal Structure Of Apo Glutamine Synthetase From Dog ( Canis Familiaris) Length = 381

Back alignment and structure

>pdb|2OJW|A Chain A, Crystal Structure Of Human Glutamine Synthetase In Complex With Adp And Phosphate Length = 384

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		266
2d3a_A		356	Glutamine synthetase; ligase; HET: P3S ADP; 2.63A	1e-154
2ojw_A		384	Glutamine synthetase; amino-acid biosynthesis, lig	1e-142
3fky_A		370	Glutamine synthetase; beta-grAsp, catalytic domain	1e-140
3o6x_A		729	Glutamine synthetase; type III, beta barrel,dodeca	9e-11
3qaj_A		444	Glutamine synthetase; AMP-PCP, ACP, ligase; HET: G	1e-04
2j9i_A		421	Glutamate-ammonia ligase domain-containing protein	5e-04

>2d3a_A Glutamine synthetase; ligase; HET: P3S ADP; 2.63A {Zea mays} PDB: 2d3b_A* 2d3c_A* Length = 356	Back alignment and structure

 Score =  431 bits (1111), Expect = e-154
 Identities = 228/266 (85%), Positives = 250/266 (93%)

Query: 1   MCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLGWPVGGY 60
           MCD YTPAGEPIPTNKR++AAK+F  P+V AEEPWYGIEQEYTLLQKD NWPLGWP+GG+
Sbjct: 91  MCDCYTPAGEPIPTNKRYSAAKIFSSPEVAAEEPWYGIEQEYTLLQKDTNWPLGWPIGGF 150

Query: 61  PGPQGPYYCGVGADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISS 120
           PGPQGPYYCG+GA+K+ GRDIV++HYKACLYAGINISGINGEVMPGQWEFQVGP VGISS
Sbjct: 151 PGPQGPYYCGIGAEKSFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISS 210

Query: 121 GDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAI 180
           GDQ+W+ARYILERITEIAGVV++FDPKPI GDWNGAGAH NYST+SMR +GG +VIK AI
Sbjct: 211 GDQVWVARYILERITEIAGVVVTFDPKPIPGDWNGAGAHTNYSTESMRKEGGYEVIKAAI 270

Query: 181 EKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFE 240
           EKL  RH EHIAAYGEGNERRLTGRHETADINTFSWGVANRGAS+RVGR+TE+ GKGYFE
Sbjct: 271 EKLKLRHKEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASVRVGRETEQNGKGYFE 330

Query: 241 DRRPASNMDPYVVTSMIAETTILWKP 266
           DRRPASNMDPYVVTSMIAETTI+WKP
Sbjct: 331 DRRPASNMDPYVVTSMIAETTIVWKP 356

PyMOL of 2d3a

>2ojw_A Glutamine synthetase; amino-acid biosynthesis, ligase, structural GENO structural genomics consortium, SGC; HET: ADP; 2.05A {Homo sapiens} PDB: 2qc8_A* 2uu7_A Length = 384	Back alignment and structure

>3fky_A Glutamine synthetase; beta-grAsp, catalytic domain, acetylation, cytoplasm, ligase, UBL conjugation; HET: FLC; 2.95A {Saccharomyces cerevisiae} Length = 370	Back alignment and structure

>3o6x_A Glutamine synthetase; type III, beta barrel,dodecamer, ligas; HET: P3S ADP; 3.50A {Bacteroides fragilis} Length = 729	Back alignment and structure

>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus musculus} Length = 421	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		266
3fky_A		370	Glutamine synthetase; beta-grAsp, catalytic domain	100.0
2d3a_A		356	Glutamine synthetase; ligase; HET: P3S ADP; 2.63A	100.0
2ojw_A		384	Glutamine synthetase; amino-acid biosynthesis, lig	100.0
3qaj_A		444	Glutamine synthetase; AMP-PCP, ACP, ligase; HET: G	100.0
4hpp_A		443	Probable glutamine synthetase; glutamine synthase	100.0
3ng0_A		473	Glutamine synthetase; GSI, nitrogen metabolism, sy	100.0
4acf_A		486	Glutamine synthetase 1; ligase, nucleotide-binding	100.0
1f52_A		468	Glutamine synthetase; ADP, MPD, ligase; HET: ADP;	100.0
2j9i_A		421	Glutamate-ammonia ligase domain-containing protein	100.0
3o6x_A		729	Glutamine synthetase; type III, beta barrel,dodeca	100.0
1r8g_A		372	Hypothetical protein YBDK; structural genomics, un	98.49
2gwd_A		449	Glutamate cysteine ligase; disulfide bridges, glut	98.22
3ln6_A		750	Glutathione biosynthesis bifunctional protein GSH;	93.04
2fao_A		309	Probable ATP-dependent DNA ligase; polymerase, pri	90.99
3ln7_A		757	Glutathione biosynthesis bifunctional protein GSH;	87.72
1nxi_A		132	Conserved hypothetical protein VC0424; structural	83.32
2iru_A		303	Putative DNA ligase-like protein RV0938/MT0965; po	80.9
1zpv_A		91	ACT domain protein; structural genomics, PSI, prot	80.48

>3fky_A Glutamine synthetase; beta-grAsp, catalytic domain, acetylation, cytoplasm, ligase, UBL conjugation; HET: FLC; 2.95A {Saccharomyces cerevisiae}	Back alignment and structure

Probab=100.00  E-value=1.5e-82  Score=593.26  Aligned_cols=263  Identities=61%  Similarity=1.093  Sum_probs=230.1

Q ss_pred             CceeeCCCCCCCCCChHHHHHHHHccccccCCcceEeeeeeEEEecCCCCCCCCCCCCCCCCCCCCCccccccchhhHHH
Q 024513            1 MCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLGWPVGGYPGPQGPYYCGVGADKALGRD   80 (266)
Q Consensus         1 ~~d~~~~~g~p~~~~pR~~L~~~~~~~~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (266)
                      +||++++||+|++.|||++|||++++++  |+++++|+|+|||||+.+.. +.++|.++.|.++++||+....+..+.++
T Consensus        95 lcd~~~~dG~P~~~~pR~iLkr~~~~~~--g~~~~~G~E~EF~Lf~~~~~-~~~~p~~~~p~~~g~yy~~~~~~~~~~~~  171 (370)
T 3fky_A           95 LAACYNNDGTPNKFNHRHEAAKLFAAHK--DEEIWFGLEQEYTLFDMYDD-VYGWPKGGYPAPQGPYYCGVGAGKVYARD  171 (370)
T ss_dssp             EEEEECTTSSBCTTCCHHHHHHHHHHTG--GGCCEEEEEEEEEEECTTSS-BTTCCTTSBCSCSSSCTTCCSTTTCSCHH
T ss_pred             EEEEEcCCCCCCCCCHHHHHHHHHHHhc--CCCceEEeeeEEEEEccCCC-cccCCCCCccCCCCccccccchhhHHHHH
Confidence            6999999999999999999999999877  99999999999999997643 55777666788899998877655555689


Q ss_pred             HHHHHHHHHHHcCceeeeeeCCCCCCceeEecCCCchhHHHHHHHHHHHHHHHHHHHcCceEEEcccCCCCCCCCceeeE
Q 024513           81 IVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHA  160 (266)
Q Consensus        81 ~~~~l~~~l~~~Gi~ve~~~~E~gpGQ~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~hGl~atFmpKP~~~d~~GsG~H~  160 (266)
                      ++++|+++|+++||+||++|+|+|||||||++.|++++++||++++||++||+||++||++|||||||+.+|++|||||+
T Consensus       172 i~~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~~~~~~~l~aAD~~~~~K~~vk~vA~~~G~~ATFmpKP~~gd~~GSG~H~  251 (370)
T 3fky_A          172 MIEAHYRACLYAGLEISGINAEVMPSQWEFQVGPCTGIDMGDQLWMARYFLHRVAEEFGIKISFHPKPLKGDWNGAGCHA  251 (370)
T ss_dssp             HHHHHHHHHHHHTCCEEEEEECSSTTEEEEEEEEEETHHHHHHHHHHHHHHHHHHHTTTCEEECCSCSSSSSSCCCBEEE
T ss_pred             HHHHHHHHHHHcCCCeeeeecCcCCCceEEecCCCCHHHHHHHHHHHHHHHHHHHHHhCcEEEEcccccCCCCCccccee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999985489999999


Q ss_pred             eEeccccCCCCchHHHHHHHHHHHHHHHHHHhhhhccccccCCCCCCCCCccceeeccCCCCceEEeCcCCCCCCCceeE
Q 024513          161 NYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFE  240 (266)
Q Consensus       161 h~Sl~~~~~~~g~~~~~~~iaGl~L~h~~al~a~~~nsYkRl~~~~~a~~p~~~~WG~~NR~a~iRvp~~~~~~~~~riE  240 (266)
                      |+|||+.++++|++.+++||+||+++|+++|++|+.||||||+|++|||.+.+++||.+||+++||||...+..+++|||
T Consensus       252 H~Sl~~~~~~~g~~~~~~~i~gl~~~h~~~i~a~~~nSYkRL~~~~eap~~~~~sWG~~NRsa~iRIp~~~~~~~~~riE  331 (370)
T 3fky_A          252 NVSTKEMRQPGGTKYIEQAIEKLSKRHAEHIKLYGSDNDMRLTGRHETASMTAFSSGVANRGSSIRIPRSVAKEGYGYFE  331 (370)
T ss_dssp             EEECHHHHSSSTHHHHHHHHHHHHHTHHHHHHSSCTTGGGC--------CCSCCCEEESCTTSSEEECHHHHHHTCCCEE
T ss_pred             eeccccccCCCCHHHHHHHHHHHHHHhHHHHHHHccchhhhcCCCccCCCcccceEecCCCceeEEecCCCCCCCCCEEE
Confidence            99999865557788889999999449999999999999999999999995446999999999999999754322346999


Q ss_pred             eCCCCCCCCHHHHHHHHHHHhhcCCC
Q 024513          241 DRRPASNMDPYVVTSMIAETTILWKP  266 (266)
Q Consensus       241 ~R~~da~aNPYLalAailaAgl~g~~  266 (266)
                      +|+||++|||||++|+||+|||+|++
T Consensus       332 ~R~pda~aNPYLa~Aailaagl~Gi~  357 (370)
T 3fky_A          332 DRRPASNIDPYLVTGIMCETVCGAID  357 (370)
T ss_dssp             ECCCBTTCCHHHHHHHHHHHHHCCBT
T ss_pred             ECCCCCCCCHHHHHHHHHHHHhcCcc
Confidence            99999999999999999999999974

PyMOL of 3fky

>2d3a_A Glutamine synthetase; ligase; HET: P3S ADP; 2.63A {Zea mays} PDB: 2d3b_A* 2d3c_A*	Back alignment and structure

>2ojw_A Glutamine synthetase; amino-acid biosynthesis, ligase, structural GENO structural genomics consortium, SGC; HET: ADP; 2.05A {Homo sapiens} PDB: 2qc8_A* 2uu7_A	Back alignment and structure

>4hpp_A Probable glutamine synthetase; glutamine synthase homolog, glutamate, polyamine, ligase; HET: GLU; 2.50A {Pseudomonas aeruginosa}	Back alignment and structure

>3ng0_A Glutamine synthetase; GSI, nitrogen metabolism, synec ligase; HET: ANP; 2.80A {Synechocystis SP}	Back alignment and structure

>4acf_A Glutamine synthetase 1; ligase, nucleotide-binding, TRI-substituted IMID TAUT state, RV2220, GLNA1; HET: 46B P3S; 2.00A {Mycobacterium tuberculosis} PDB: 2wgs_A* 2whi_A* 3zxr_A* 3zxv_A* 2bvc_A* 1hto_A* 1htq_A*	Back alignment and structure

>1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A {Salmonella typhimurium} SCOP: d.15.9.1 d.128.1.1 PDB: 1f1h_A* 1fpy_A* 1lgr_A* 2lgs_A* 2gls_A	Back alignment and structure

>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus musculus}	Back alignment and structure

>3o6x_A Glutamine synthetase; type III, beta barrel,dodecamer, ligas; HET: P3S ADP; 3.50A {Bacteroides fragilis}	Back alignment and structure

>1r8g_A Hypothetical protein YBDK; structural genomics, unknown function, carboxylate-amine ligase, structure 2 function project, S2F; 2.15A {Escherichia coli} SCOP: d.128.1.3 PDB: 1tt4_A	Back alignment and structure

>2gwd_A Glutamate cysteine ligase; disulfide bridges, glutathione biosynthesis, beta-hairpin, R regulation; HET: GLU; 2.09A {Brassica juncea} PDB: 2gwc_A*	Back alignment and structure

>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}	Back alignment and structure

>2fao_A Probable ATP-dependent DNA ligase; polymerase, primase, NHEJ, hydrolase/transferase complex; 1.50A {Pseudomonas aeruginosa} PDB: 2faq_A* 2far_A*	Back alignment and structure

>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}	Back alignment and structure

>1nxi_A Conserved hypothetical protein VC0424; structural genomics, AB sandwich, COG 3076, ATCC NO. 51394D, NESG target OP3, PSI; NMR {Vibrio cholerae} SCOP: d.58.47.1	Back alignment and structure

>2iru_A Putative DNA ligase-like protein RV0938/MT0965; polymerase, primase, NHEJ, transferase; 1.65A {Mycobacterium tuberculosis} PDB: 2irx_A* 2iry_A* 2r9l_A* 3pky_A*	Back alignment and structure

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		266
d2bvca2		374	d.128.1.1 (A:105-478) Glutamine synthetase, C-term	4e-09
d1f52a2		368	d.128.1.1 (A:101-468) Glutamine synthetase, C-term	7e-05

>d2bvca2 d.128.1.1 (A:105-478) Glutamine synthetase, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 374	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: Glutamine synthetase/guanido kinase
superfamily: Glutamine synthetase/guanido kinase
family: Glutamine synthetase catalytic domain
domain: Glutamine synthetase, C-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 54.1 bits (129), Expect = 4e-09
 Identities = 44/217 (20%), Positives = 70/217 (32%), Gaps = 14/217 (6%)

Query: 52  PLGWPVGGYPGPQGPYYCGVGADKALGRDIVNSHYKACLYAGINI-SGINGEVMPGQWEF 110
             G P  GY       Y  V A      D+ +      + +G  +  G +     GQ E 
Sbjct: 66  ADGSPNRGYKVRHKGGYFPV-APNDQYVDLRDKMLTNLINSGFILEKGHHEVGSGGQAEI 124

Query: 111 QVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAH--------ANY 162
                  + + D + + +YI++      G  ++F PKP+ GD               A  
Sbjct: 125 NYQFNSLLHAADDMQLYKYIIKNTAWQNGKTVTFMPKPLFGDNGSGMHCHQSLWKDGAPL 184

Query: 163 STKSMRNDGGIDVIKKAIEKLGKRHGE--HIAAYGEGNERRLTGRHETADINTFSWGVAN 220
                   G  D  +  I  L                + +RL      A IN   +   N
Sbjct: 185 MYDETGYAGLSDTARHYIGGLLHHAPSLLAFTNPTVNSYKRLVP-GYEAPINL-VYSQRN 242

Query: 221 RGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMI 257
           R A +R+            E R P S+ +PY+  S +
Sbjct: 243 RSACVRIPITGSNPKAKRLEFRSPDSSGNPYLAFSAM 279

PyMOL of d2bvca2

>d1f52a2 d.128.1.1 (A:101-468) Glutamine synthetase, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 368	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		266
d1f52a2		368	Glutamine synthetase, C-terminal domain {Salmonell	100.0
d2bvca2		374	Glutamine synthetase, C-terminal domain {Mycobacte	100.0
d1r8ga_		368	Carboxylate-amine ligase YbdK {Escherichia coli [T	98.1

>d1f52a2 d.128.1.1 (A:101-468) Glutamine synthetase, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Glutamine synthetase/guanido kinase
superfamily: Glutamine synthetase/guanido kinase
family: Glutamine synthetase catalytic domain
domain: Glutamine synthetase, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=2.3e-73  Score=528.29  Aligned_cols=246  Identities=21%  Similarity=0.245  Sum_probs=209.7

Q ss_pred             CCChHHHHHHHHccccccCCcc--eEeeeeeEEEecCCCC---------------C-------CCCCCCCCCCCCCCCCc
Q 024513           13 PTNKRFNAAKVFGHPDVVAEEP--WYGIEQEYTLLQKDIN---------------W-------PLGWPVGGYPGPQGPYY   68 (266)
Q Consensus        13 ~~~pR~~L~~~~~~~~~~G~~~--~~g~E~EF~l~~~~~~---------------~-------~~~~~~~~~~~~~~~~~   68 (266)
                      +.|||++|||+++++++.|+.+  .+|+|+|||||++...               .       ..+......+...+.||
T Consensus         1 ~~dPR~iLkr~~~~l~~~G~~~~~~~g~E~EF~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (368)
T d1f52a2           1 DRDPRSIAKRAEDYLRATGIADTVLFGPEPEFFLFDDIRFGASISGSHVAIDDIEGAWNSSTKYEGGNKGHRPGVKGGYF   80 (368)
T ss_dssp             TTCHHHHHHHHHHHHHHHTSCSEEEEEEEEEEEEESEEEEEEETTEEEEEEECTTCGGGGGCCCTTCCCCCCCCTTCCSS
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCceEEEeceEEEEEeccccccCcCCCccccCCccccccCCCcccCCCCCCccccCCcee
Confidence            4699999999999999999965  5599999999975210               0       00000011233456677


Q ss_pred             cccccchhhHHHHHHHHHHHHHHcCceeeeeeCCCC-CCceeEecCCCchhHHHHHHHHHHHHHHHHHHHcCceEEEccc
Q 024513           69 CGVGADKALGRDIVNSHYKACLYAGINISGINGEVM-PGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPK  147 (266)
Q Consensus        69 ~~~~~~~~~~~~~~~~l~~~l~~~Gi~ve~~~~E~g-pGQ~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~hGl~atFmpK  147 (266)
                      +...++.  ..+++.+|.+.|+.+||+|+++|+|+| ||||||++.|+++|++||+++++|++||+||++||+.||||||
T Consensus        81 ~~~~~~~--~~~~~~~i~~~l~~~Gi~ve~~~~E~~~~gq~Ei~~~~~~~l~aAD~~~~~k~~ik~iA~~~Gl~atFmpK  158 (368)
T d1f52a2          81 PVPPVDS--AQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIYKYVVHNVAHRFGKTATFMPK  158 (368)
T ss_dssp             BCTTSSC--CHHHHHHHHHHHHHTTCCEEEEEECSSTTTEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHTTCEEECCSC
T ss_pred             eeeccch--HHHHHHHHHHHHHhhccCeeeeecccccCCceeecCCCCchHHHHHHHHHHHHHHHHHHHHhcceeeEecc
Confidence            7776665  468999999999999999999999998 6999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCceeeEeEeccccCC-------CCch-HHHHHHHHHHHHHHHHHHhhhhc---cccccCCCCCCCCCccceee
Q 024513          148 PIKGDWNGAGAHANYSTKSMRN-------DGGI-DVIKKAIEKLGKRHGEHIAAYGE---GNERRLTGRHETADINTFSW  216 (266)
Q Consensus       148 P~~~d~~GsG~H~h~Sl~~~~~-------~~g~-~~~~~~iaGl~L~h~~al~a~~~---nsYkRl~~~~~a~~p~~~~W  216 (266)
                      |+. +.+|||+|+|+|||+.++       ..++ ..+++||+|| |+|++++++|++   ||||||+|++|||  ++++|
T Consensus       159 P~~-~~~GsG~HiH~Sl~~~~~n~~~~~~~~~lS~~~~~fiaGl-l~~~~~~~al~~PtvNSYkRl~~~~~aP--~~~~W  234 (368)
T d1f52a2         159 PMF-GDNGSGMHCHMSLAKNGTNLFSGDKYAGLSEQALYYIGGV-IKHAKAINALANPTTNSYKRLVPGYEAP--VMLAY  234 (368)
T ss_dssp             SST-TSCCCCEEEEEEEEETTEETTBCSSGGGBCHHHHHHHHHH-HHTHHHHHHHHSCSGGGGGTSSSCSSCC--CEEEE
T ss_pred             cCC-CCCCcceeEEEEeccCCCcccccccccccCHHHHHHHHHH-HHhhHHHHHHHCCCchHHhhccCCCcCC--ceeee
Confidence            999 589999999999998531       1345 4779999999 999999999997   8999999999998  89999


Q ss_pred             ccCCCCceEEeCcCCCCCCCceeEeCCCCCCCCHHHHHHHHHHHhhcCC
Q 024513          217 GVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK  265 (266)
Q Consensus       217 G~~NR~a~iRvp~~~~~~~~~riE~R~~da~aNPYLalAailaAgl~g~  265 (266)
                      |.+||+++||||.... +.++|||+|++|++|||||++||+|+|||+|+
T Consensus       235 g~~NR~a~iRi~~~~~-~~~~riE~R~~da~aNPYL~lAa~laagl~Gi  282 (368)
T d1f52a2         235 SARNRSASIRIPVVAS-PKARRIEVRFPDPAANPYLCFAALLMAGLDGI  282 (368)
T ss_dssp             ESSCTTEEEECCCCSC-GGGCCEEECCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred             ccCccccceeecccCC-CccceEEecCCCccHHHHHHHHHHHHHhhhhh
Confidence            9999999999996432 23679999999999999999999999999985

PyMOL of d1f52a2

>d2bvca2 d.128.1.1 (A:105-478) Glutamine synthetase, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1r8ga_ d.128.1.3 (A:) Carboxylate-amine ligase YbdK {Escherichia coli [TaxId: 562]}	Back information, alignment and structure