Citrus Sinensis ID: 024518

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260------
MQVAKGVKLPTTAIGCDCRGNCLNSHDCSCAKLNSTDSKHYDFPYVHRDGGRLVEAKAVVFECGPKCGCGPDCINRTSQRGLKYRLEVYRTPKKGWAVRSWDFIPAGAPVCEYIGVLRRTEDLDNACDNENNFIFDIDCLQTMRGLGGRERRLRDVSISTIYNSDRPDDQKVENTPDYCIDAGAVGNVARFINHSCEPNLFVQCVLSSHHDLKLARVVLFAADNIPPLQELTYDYGYELDSVHGPDGKVKQMVCYCGAEGCRGRLF
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccEEcEEEEEcccccEEEEEcccccccccEEEEccEEccHHHHHHHHccccccEEccHHHHHHccccccccccccccccccccccccccccccccccEEEEcccccccccEEccccccccEEEEEEEccccccccEEEEEEcccccccccEEEEcccccccccccccccccEEEEcccccccEEcc
ccccccccccccccccccccccccccccccEEcccccccccccccccccccEEEccccEEEccccccccccccccccHHHcccccEEEEEcccccEEEEEcccEccccEEEEcccEEEcHHHHHHcccccccEEEEcccccccHHccccccccccccccccccccccccccccccccEEEEccccccHHHEEEccccccEEEEEEEEccccccccEEEEEEccccccccEEEEEcccEccccccccccEEEEEcEccccHcccccc
mqvakgvklpttaigcdcrgnclnshdcscaklnstdskhydfpyvhrdggrlVEAKAVVfecgpkcgcgpdcinrtsqrgLKYRLEvyrtpkkgwavrswdfipagapvceYIGVlrrtedldnacdnennfifdIDCLQTmrglggrerrlrdvsistiynsdrpddqkventpdycidagavgnVARFinhscepnlFVQCVLSSHHDLKLARVVLFaadnipplqeltydygyeldsvhgpdgkvkqmvcycgaegcrgrlf
mqvakgvklpttaigcdcrgNCLNSHDCSCAKLNSTDSKHYDFPYVHRDGGRLVEAKAVVFEcgpkcgcgpdcinrtsqrglkyRLEVYrtpkkgwavrswdfipaGAPVCEYIGVLRRTEDLDNACDNENnfifdidclQTMRGlggrerrlrdvsistiynsdrpddqkvenTPDYCIDAGAVGNVARFINHSCEPNLFVQCVLSSHHDLKLARVVLFAADNIPPLQELTYDYGYELDSVHGPDGKVKQMVCYCGAEGCRGRLF
MQVAKGVKLPTTAIGCDCRGNCLNSHDCSCAKLNSTDSKHYDFPYVHRDGGRLVEAKAVVFECGPKCGCGPDCINRTSQRGLKYRLEVYRTPKKGWAVRSWDFIPAGAPVCEYIGVLRRTEDLDNACDNENNFIFDIDCLQTMrglggrerrlrDVSISTIYNSDRPDDQKVENTPDYCIDAGAVGNVARFINHSCEPNLFVQCVLSSHHDLKLARVVLFAADNIPPLQELTYDYGYELDSVHGPDGKVKQMVCYCGAEGCRGRLF
******VKLPTTAIGCDCRGNCLNSHDCSCAKLNSTDSKHYDFPYVHRDGGRLVEAKAVVFECGPKCGCGPDCINRTSQRGLKYRLEVYRTPKKGWAVRSWDFIPAGAPVCEYIGVLRRTEDLDNACDNENNFIFDIDCLQTMRGLGGRERRLRDVSISTIY************TPDYCIDAGAVGNVARFINHSCEPNLFVQCVLSSHHDLKLARVVLFAADNIPPLQELTYDYGYELDSVHGPDGKVKQMVCYCGAEGC*****
**VAKGVKLPTTAIGCDCRGNCLNSHDCSCAKLNSTDSKHYDFPYVHRDGGRLVEAKAVVFECGPKCGCGPDCINRTSQRGLKYRLEVYRTPKKGWAVRSWDFIPAGAPVCEYIGVLRRTEDLDNACDNENNFIFDIDCLQTMRGLGGRERRLRDVSISTIYNSDRPDDQKVENTPDYCIDAGAVGNVARFINHSCEPNLFVQCVLSSHHDLKLARVVLFAADNIPPLQELTYDYGYELDSVHG*DGKVKQMVCYCGAEGCRGRLF
MQVAKGVKLPTTAIGCDCRGNCLNSHDCSCAKLNSTDSKHYDFPYVHRDGGRLVEAKAVVFECGPKCGCGPDCINRTSQRGLKYRLEVYRTPKKGWAVRSWDFIPAGAPVCEYIGVLRRTEDLDNACDNENNFIFDIDCLQTMRGLGGRERRLRDVSISTIYNSDRPDDQKVENTPDYCIDAGAVGNVARFINHSCEPNLFVQCVLSSHHDLKLARVVLFAADNIPPLQELTYDYGYELDSVHGPDGKVKQMVCYCGAEGCRGRLF
***AKGVKLPTTAIGCDCRGNCLNSHDCSCAKLNSTDSKHYDFPYVHRDGGRLVEAKAVVFECGPKCGCGPDCINRTSQRGLKYRLEVYRTPKKGWAVRSWDFIPAGAPVCEYIGVLRRTEDLDNACDNENNFIFDIDCLQTMRGLGG********************DQKVENTPDYCIDAGAVGNVARFINHSCEPNLFVQCVLSSHHDLKLARVVLFAADNIPPLQELTYDYGYELDSVHGPDGKVKQMVCYCGAEGCR*RLF
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MQVAKGVKLPTTAIGCDCRGNCLNSHDCSCAKLNSTDSKHYDFPYVHRDGGRLVEAKAVVFECGPKCGCGPDCINRTSQRGLKYRLEVYRTPKKGWAVRSWDFIPAGAPVCEYIGVLRRTEDLDNACDNENNFIFDIDCLQTMRGLGGRERRLRDVSISTIYNSDRPDDQKVENTPDYCIDAGAVGNVARFINHSCEPNLFVQCVLSSHHDLKLARVVLFAADNIPPLQELTYDYGYELDSVHGPDGKVKQMVCYCGAEGCRGRLF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query266 2.2.26 [Sep-21-2011]
Q8GZB6624 Histone-lysine N-methyltr yes no 0.958 0.408 0.647 1e-102
O82175794 Histone-lysine N-methyltr no no 0.804 0.269 0.361 4e-46
Q8VZ17790 Histone-lysine N-methyltr no no 0.906 0.305 0.376 3e-42
Q9C5P4669 Histone-lysine N-methyltr no no 0.917 0.364 0.355 1e-39
O22781651 Histone-lysine N-methyltr no no 0.789 0.322 0.380 6e-35
Q9T0G7650 Probable histone-lysine N no no 0.800 0.327 0.373 2e-33
Q9FF80670 Histone-lysine N-methyltr no no 0.909 0.361 0.328 3e-33
Q93YF5704 Histone-lysine N-methyltr N/A no 0.864 0.326 0.322 6e-32
Q5DW341296 Histone-lysine N-methyltr yes no 0.616 0.126 0.362 9e-28
Q96KQ71210 Histone-lysine N-methyltr yes no 0.748 0.164 0.318 1e-27
>sp|Q8GZB6|SUVH4_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 OS=Arabidopsis thaliana GN=SUVH4 PE=1 SV=2 Back     alignment and function desciption
 Score =  369 bits (948), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 171/264 (64%), Positives = 211/264 (79%), Gaps = 9/264 (3%)

Query: 3   VAKGVKLPTTAIGCDCRGNCLNSHDCSCAKLNSTDSKHYDFPYVHRDGGRLVEAKAVVFE 62
           +   V +P ++ GC+CRG+C +S  C+CAKLN  +     FPYV  + GRL+E++ VVFE
Sbjct: 370 IEPNVIIPKSSTGCNCRGSCTDSKKCACAKLNGGN-----FPYVDLNDGRLIESRDVVFE 424

Query: 63  CGPKCGCGPDCINRTSQRGLKYRLEVYRTPKKGWAVRSWDFIPAGAPVCEYIGVLRRTED 122
           CGP CGCGP C+NRTSQ+ L++ LEV+R+ KKGWAVRSW++IPAG+PVCEYIGV+RRT D
Sbjct: 425 CGPHCGCGPKCVNRTSQKRLRFNLEVFRSAKKGWAVRSWEYIPAGSPVCEYIGVVRRTAD 484

Query: 123 LDNACDNENNFIFDIDCLQTMRGLGGRERRLRDVSISTIYNSDRPDDQKVENTPDYCIDA 182
           +D   DNE  +IF+IDC QTM+GLGGR+RRLRDV++    N+      + EN P++CIDA
Sbjct: 485 VDTISDNE--YIFEIDCQQTMQGLGGRQRRLRDVAVPM--NNGVSQSSEDENAPEFCIDA 540

Query: 183 GAVGNVARFINHSCEPNLFVQCVLSSHHDLKLARVVLFAADNIPPLQELTYDYGYELDSV 242
           G+ GN ARFINHSCEPNLFVQCVLSSH D++LARVVLFAADNI P+QELTYDYGY LDSV
Sbjct: 541 GSTGNFARFINHSCEPNLFVQCVLSSHQDIRLARVVLFAADNISPMQELTYDYGYALDSV 600

Query: 243 HGPDGKVKQMVCYCGAEGCRGRLF 266
           HGPDGKVKQ+ CYCGA  CR RL+
Sbjct: 601 HGPDGKVKQLACYCGALNCRKRLY 624
Histone methyltransferase. Methylates 'Lys-9' of histone H3. H3 'Lys-9' methylation represents a specific tag for epigenetic transcriptional repression. The silencing mechanism via DNA CpNpG methylation requires the targeting of chromomethylase CMT3 to methylated histones, probably through an interaction with an HP1-like adapter. By its function, KYP is directly required for the maintenance of the DNA CpNpG and asymmetric methylation. Involved in the silencing of transposable elements.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 3
>sp|O82175|SUVH5_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 OS=Arabidopsis thaliana GN=SUVH5 PE=1 SV=1 Back     alignment and function description
>sp|Q8VZ17|SUVH6_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6 OS=Arabidopsis thaliana GN=SUVH6 PE=2 SV=2 Back     alignment and function description
>sp|Q9C5P4|SUVH3_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3 OS=Arabidopsis thaliana GN=SUVH3 PE=2 SV=2 Back     alignment and function description
>sp|O22781|SUVH2_ARATH Histone-lysine N-methyltransferase, H3 lysine-9, H3 lysine-27, H4 lysine-20 and cytosine specific SUVH2 OS=Arabidopsis thaliana GN=SUVH2 PE=1 SV=1 Back     alignment and function description
>sp|Q9T0G7|SUVH9_ARATH Probable histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH9 OS=Arabidopsis thaliana GN=SUVH9 PE=2 SV=1 Back     alignment and function description
>sp|Q9FF80|SUVH1_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1 OS=Arabidopsis thaliana GN=SUVH1 PE=2 SV=1 Back     alignment and function description
>sp|Q93YF5|SUVH1_TOBAC Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1 OS=Nicotiana tabacum GN=SUVH1 PE=1 SV=1 Back     alignment and function description
>sp|Q5DW34|EHMT1_MOUSE Histone-lysine N-methyltransferase EHMT1 OS=Mus musculus GN=Ehmt1 PE=1 SV=2 Back     alignment and function description
>sp|Q96KQ7|EHMT2_HUMAN Histone-lysine N-methyltransferase EHMT2 OS=Homo sapiens GN=EHMT2 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query266
296082268 701 unnamed protein product [Vitis vinifera] 0.954 0.362 0.740 1e-115
224065292 525 SET domain protein [Populus trichocarpa] 0.969 0.491 0.740 1e-114
225451615 556 PREDICTED: histone-lysine N-methyltransf 0.954 0.456 0.740 1e-113
449455932 689 PREDICTED: histone-lysine N-methyltransf 0.973 0.375 0.718 1e-112
449516381 479 PREDICTED: LOW QUALITY PROTEIN: histone- 0.973 0.540 0.718 1e-111
255543539 640 histone-lysine n-methyltransferase, suvh 0.834 0.346 0.751 1e-103
357508435 862 Histone-lysine N-methyltransferase, H3 l 0.969 0.299 0.634 1e-103
356560426 720 PREDICTED: histone-lysine N-methyltransf 0.969 0.358 0.684 1e-103
356570263 603 PREDICTED: histone-lysine N-methyltransf 0.969 0.427 0.687 1e-102
356546156 646 PREDICTED: histone-lysine N-methyltransf 0.969 0.399 0.681 1e-101
>gi|296082268|emb|CBI21273.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 197/266 (74%), Positives = 224/266 (84%), Gaps = 12/266 (4%)

Query: 1   MQVAKGVKLPTTAIGCDCRGNCLNSHDCSCAKLNSTDSKHYDFPYVHRDGGRLVEAKAVV 60
           ++V+K VKLP+ AIGC+C+G C +   CSCA LN +D     FPYVHRDGGRL+EAK VV
Sbjct: 448 IKVSKSVKLPSNAIGCNCKGTCTDPRTCSCAMLNGSD-----FPYVHRDGGRLIEAKDVV 502

Query: 61  FECGPKCGCGPDCINRTSQRGLKYRLEVYRTPKKGWAVRSWDFIPAGAPVCEYIGVLRRT 120
           FECGPKCGCGP C+NRTSQRGLKYRLEV+RTPKKGWAVRSWD+IP+GAP+CEY G+L RT
Sbjct: 503 FECGPKCGCGPGCLNRTSQRGLKYRLEVFRTPKKGWAVRSWDYIPSGAPICEYKGILMRT 562

Query: 121 EDLDNACDNENNFIFDIDCLQTMRGLGGRERRLRDVSISTIYNSDRPDDQKVENTPDYCI 180
           ++LDN  DN  N+IFDIDCLQTMRGL GRERR RDVS+ T       DDQK E+ P++CI
Sbjct: 563 DELDNVSDN--NYIFDIDCLQTMRGLDGRERRFRDVSMPT-----STDDQKSESVPEFCI 615

Query: 181 DAGAVGNVARFINHSCEPNLFVQCVLSSHHDLKLARVVLFAADNIPPLQELTYDYGYELD 240
           DAG+ GNVARFINHSCEPNLFVQCVLSSHHD KLARV+LFAADNIPPLQELTYDYGY LD
Sbjct: 616 DAGSTGNVARFINHSCEPNLFVQCVLSSHHDAKLARVMLFAADNIPPLQELTYDYGYTLD 675

Query: 241 SVHGPDGKVKQMVCYCGAEGCRGRLF 266
           SV GPDGK+KQM+C+CGA  CR RL 
Sbjct: 676 SVMGPDGKIKQMLCFCGAADCRKRLL 701

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224065292|ref|XP_002301759.1| SET domain protein [Populus trichocarpa] gi|222843485|gb|EEE81032.1| SET domain protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225451615|ref|XP_002275754.1| PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449455932|ref|XP_004145704.1| PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449516381|ref|XP_004165225.1| PREDICTED: LOW QUALITY PROTEIN: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|255543539|ref|XP_002512832.1| histone-lysine n-methyltransferase, suvh, putative [Ricinus communis] gi|223547843|gb|EEF49335.1| histone-lysine n-methyltransferase, suvh, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357508435|ref|XP_003624506.1| Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 [Medicago truncatula] gi|355499521|gb|AES80724.1| Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356560426|ref|XP_003548493.1| PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4-like [Glycine max] Back     alignment and taxonomy information
>gi|356570263|ref|XP_003553309.1| PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4-like [Glycine max] Back     alignment and taxonomy information
>gi|356546156|ref|XP_003541497.1| PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query266
TAIR|locus:2159133624 SUVH4 "SU(VAR)3-9 homolog 4" [ 0.958 0.408 0.613 8.3e-90
TAIR|locus:2063384794 SUVH5 "SU(VAR)3-9 homolog 5" [ 0.349 0.117 0.5 1e-46
TAIR|locus:2065988790 SUVH6 "SU(VAR)3-9 homolog 6" [ 0.909 0.306 0.378 8.5e-43
TAIR|locus:2032592669 SUVH3 "SU(VAR)3-9 homolog 3" [ 0.932 0.370 0.362 1.5e-39
TAIR|locus:2175289670 SUVH1 "SU(VAR)3-9 homolog 1" [ 0.477 0.189 0.357 2.7e-36
TAIR|locus:2051083651 SUVH2 "SU(VAR)3-9 homolog 2" [ 0.353 0.144 0.475 5.3e-35
MGI|MGI:19342291307 Setdb1 "SET domain, bifurcated 0.312 0.063 0.511 8.9e-34
UNIPROTKB|J9NWE71111 SETDB1 "Uncharacterized protei 0.312 0.074 0.511 1.2e-33
UNIPROTKB|Q150471291 SETDB1 "Histone-lysine N-methy 0.312 0.064 0.511 1.8e-33
UNIPROTKB|J9P7P51293 SETDB1 "Uncharacterized protei 0.312 0.064 0.511 1.8e-33
TAIR|locus:2159133 SUVH4 "SU(VAR)3-9 homolog 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 896 (320.5 bits), Expect = 8.3e-90, P = 8.3e-90
 Identities = 162/264 (61%), Positives = 200/264 (75%)

Query:     3 VAKGVKLPTTAIGCDCRGNCLNSHDCSCAKLNSTDSKHYDFPYVHRDGGRLVEAKAVVFE 62
             +   V +P ++ GC+CRG+C +S  C+CAKLN  +     FPYV  + GRL+E++ VVFE
Sbjct:   370 IEPNVIIPKSSTGCNCRGSCTDSKKCACAKLNGGN-----FPYVDLNDGRLIESRDVVFE 424

Query:    63 CGPKCGCGPDCINRTSQRGLKYRLEVYRTPKKGWAVRSWDFIPAGAPVCEYIGVLRRTED 122
             CGP CGCGP C+NRTSQ+ L++ LEV+R+ KKGWAVRSW++IPAG+PVCEYIGV+RRT D
Sbjct:   425 CGPHCGCGPKCVNRTSQKRLRFNLEVFRSAKKGWAVRSWEYIPAGSPVCEYIGVVRRTAD 484

Query:   123 LDNACDNENNFIFDIDCLQTMXXXXXXXXXXXDVSISTIYNSDRPDDQKVENTPDYCIDA 182
             +D   DNE  +IF+IDC QTM           DV++    N+      + EN P++CIDA
Sbjct:   485 VDTISDNE--YIFEIDCQQTMQGLGGRQRRLRDVAVPM--NNGVSQSSEDENAPEFCIDA 540

Query:   183 GAVGNVARFINHSCEPNLFVQCVLSSHHDLKLARVVLFAADNIPPLQELTYDYGYELDSV 242
             G+ GN ARFINHSCEPNLFVQCVLSSH D++LARVVLFAADNI P+QELTYDYGY LDSV
Sbjct:   541 GSTGNFARFINHSCEPNLFVQCVLSSHQDIRLARVVLFAADNISPMQELTYDYGYALDSV 600

Query:   243 HGPDGKVKQMVCYCGAEGCRGRLF 266
             HGPDGKVKQ+ CYCGA  CR RL+
Sbjct:   601 HGPDGKVKQLACYCGALNCRKRLY 624
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0018024 "histone-lysine N-methyltransferase activity" evidence=IEA
GO:0034968 "histone lysine methylation" evidence=IEA
GO:0042393 "histone binding" evidence=IEA
GO:0010216 "maintenance of DNA methylation" evidence=IDA
GO:0016571 "histone methylation" evidence=RCA;IDA
GO:0018022 "peptidyl-lysine methylation" evidence=IDA
GO:0046974 "histone methyltransferase activity (H3-K9 specific)" evidence=IDA
GO:0008327 "methyl-CpG binding" evidence=IDA
GO:0010385 "double-stranded methylated DNA binding" evidence=IDA
GO:0010428 "methyl-CpNpG binding" evidence=IDA
GO:0010429 "methyl-CpNpN binding" evidence=IDA
GO:0051567 "histone H3-K9 methylation" evidence=RCA;IMP
GO:0000226 "microtubule cytoskeleton organization" evidence=RCA
GO:0000911 "cytokinesis by cell plate formation" evidence=RCA
GO:0006260 "DNA replication" evidence=RCA
GO:0006270 "DNA replication initiation" evidence=RCA
GO:0006275 "regulation of DNA replication" evidence=RCA
GO:0006306 "DNA methylation" evidence=RCA
GO:0006342 "chromatin silencing" evidence=RCA
GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA
GO:0007267 "cell-cell signaling" evidence=RCA
GO:0008283 "cell proliferation" evidence=RCA
GO:0009616 "virus induced gene silencing" evidence=RCA
GO:0009640 "photomorphogenesis" evidence=RCA
GO:0009855 "determination of bilateral symmetry" evidence=RCA
GO:0010014 "meristem initiation" evidence=RCA
GO:0010073 "meristem maintenance" evidence=RCA
GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA
GO:0010388 "cullin deneddylation" evidence=RCA
GO:0016567 "protein ubiquitination" evidence=RCA
GO:0016572 "histone phosphorylation" evidence=RCA
GO:0016579 "protein deubiquitination" evidence=RCA
GO:0031047 "gene silencing by RNA" evidence=RCA
GO:0031048 "chromatin silencing by small RNA" evidence=RCA
GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
GO:0051726 "regulation of cell cycle" evidence=RCA
TAIR|locus:2063384 SUVH5 "SU(VAR)3-9 homolog 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2065988 SUVH6 "SU(VAR)3-9 homolog 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2032592 SUVH3 "SU(VAR)3-9 homolog 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175289 SUVH1 "SU(VAR)3-9 homolog 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2051083 SUVH2 "SU(VAR)3-9 homolog 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:1934229 Setdb1 "SET domain, bifurcated 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|J9NWE7 SETDB1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q15047 SETDB1 "Histone-lysine N-methyltransferase SETDB1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|J9P7P5 SETDB1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.1.430.737
3rd Layer2.1.10.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query266
smart00317124 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zest 1e-31
pfam00856113 pfam00856, SET, SET domain 2e-22
pfam05033103 pfam05033, Pre-SET, Pre-SET motif 2e-12
COG2940480 COG2940, COG2940, Proteins containing SET domain [ 1e-10
smart0046898 smart00468, PreSET, N-terminal to some SET domains 2e-08
>gnl|CDD|214614 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain Back     alignment and domain information 
 Score =  112 bits (283), Expect = 1e-31
 Identities = 52/158 (32%), Positives = 78/158 (49%), Gaps = 35/158 (22%)

Query: 84  YRLEVYRTPKKGWAVRSWDFIPAGAPVCEYIGVLRRTEDLDNACDNENNFIFDIDCLQTM 143
            +LEV+++P KGW VR+ + IP G  + EY+G +  +E+ +     E    +D D  +  
Sbjct: 1   NKLEVFKSPGKGWGVRATEDIPKGEFIGEYVGEIITSEEAE-----ERPKAYDTDGAKA- 54

Query: 144 RGLGGRERRLRDVSISTIYNSDRPDDQKVENTPDYCIDAGAVGNVARFINHSCEPNLFVQ 203
                            +++ D           D CIDA   GN+ARFINHSCEPN  + 
Sbjct: 55  ---------------FYLFDIDS----------DLCIDARRKGNLARFINHSCEPNCELL 89

Query: 204 CVLSSHHDLKLARVVLFAADNIPPLQELTYDYGYELDS 241
            V  +  D    R+V+FA  +I P +ELT DYG +  +
Sbjct: 90  FVEVNGDD----RIVIFALRDIKPGEELTIDYGSDYAN 123

Putative methyl transferase, based on outlier plant homologues. Length = 124
>gnl|CDD|216155 pfam00856, SET, SET domain Back     alignment and domain information
>gnl|CDD|218393 pfam05033, Pre-SET, Pre-SET motif Back     alignment and domain information
>gnl|CDD|225491 COG2940, COG2940, Proteins containing SET domain [General function prediction only] Back     alignment and domain information
>gnl|CDD|128744 smart00468, PreSET, N-terminal to some SET domains Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 266
KOG1082364 consensus Histone H3 (Lys9) methyltransferase SUV3 100.0
KOG4442 729 consensus Clathrin coat binding protein/Huntingtin 100.0
KOG11411262 consensus Predicted histone methyl transferase [Ch 100.0
KOG1079739 consensus Transcriptional repressor EZH1 [Transcri 99.98
KOG10801005 consensus Histone H3 (Lys4) methyltransferase comp 99.97
smart00317116 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) 99.93
KOG10831306 consensus Putative transcription factor ASH1/LIN-5 99.89
KOG1085392 consensus Predicted methyltransferase (contains a 99.8
COG2940480 Proteins containing SET domain [General function p 99.76
PF00856162 SET: SET domain; InterPro: IPR001214 The SET domai 99.61
PF05033103 Pre-SET: Pre-SET motif; InterPro: IPR007728 This r 99.18
KOG1081463 consensus Transcription factor NSD1 and related SE 99.01
KOG2589 453 consensus Histone tail methylase [Chromatin struct 98.84
smart0046898 PreSET N-terminal to some SET domains. A Cys-rich 98.82
KOG2461 396 consensus Transcription factor BLIMP-1/PRDI-BF1, c 98.64
KOG11411262 consensus Predicted histone methyl transferase [Ch 98.26
smart0050826 PostSET Cysteine-rich motif following a subset of 97.33
smart0057051 AWS associated with SET domains. subdomain of PRES 96.49
KOG2084 482 consensus Predicted histone tail methylase contain 92.31
KOG1337 472 consensus N-methyltransferase [General function pr 90.88
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription] Back     alignment and domain information 
Probab=100.00  E-value=7.4e-48  Score=348.50  Aligned_cols=245  Identities=37%  Similarity=0.611  Sum_probs=186.1

Q ss_pred             CCCCCCCcccCCCCCCCC--CcccccccccCCCCCCCcccccCCC-eeeeccceEEEcCCCCCCCCCCCCcccccCCccc
Q 024518            9 LPTTAIGCDCRGNCLNSH--DCSCAKLNSTDSKHYDFPYVHRDGG-RLVEAKAVVFECGPKCGCGPDCINRTSQRGLKYR   85 (266)
Q Consensus         9 ~~~~~~gC~C~~~C~~~~--~C~C~~~~~~~~~~~~~~y~~~~~g-~l~~~~~~~~EC~~~C~C~~~C~Nr~~q~~~~~~   85 (266)
                      .+.+..+|.|.+.|....  .|.|.+.+..     .++|....++ .+...+.++|||++.|+|++.|.||++|+|.+.+
T Consensus       103 ~~~~~~~c~C~~~~~~~~~~~C~C~~~n~~-----~~~~~~~~~~~~~~~~~~~i~EC~~~C~C~~~C~nRv~q~g~~~~  177 (364)
T KOG1082|consen  103 DCENSTGCRCCSSCSSVLPLTCLCERHNGG-----LVAYTCDGDCGTLGKFKEPVFECSVACGCHPDCANRVVQKGLQFH  177 (364)
T ss_pred             cCccccCCCccCCCCCCCCccccChHhhCC-----ccccccCCccccccccCccccccccCCCCCCcCcchhhccccccc
Confidence            446899999998887532  3999999988     6777633322 6667788999999999999999999999999999


Q ss_pred             EEEEEeCCCceeEEeCCCCCCCCeEEEeeeEEeChhhhhhhccCCCceEEecchhhhhccCCCceeecccccceeecCCC
Q 024518           86 LEVYRTPKKGWAVRSWDFIPAGAPVCEYIGVLRRTEDLDNACDNENNFIFDIDCLQTMRGLGGRERRLRDVSISTIYNSD  165 (266)
Q Consensus        86 l~v~~t~~kG~Gv~a~~~I~~G~~I~ey~Gevi~~~e~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (266)
                      |+||+++.+|||||+++.||+|+||+||+||+++.++++++.. ...|.++.........       ......+...+..
T Consensus       178 leIfrt~~kGwgvRs~~~I~~G~fvcEyaGe~~t~~e~~~~~~-~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~  249 (364)
T KOG1082|consen  178 LEVFRTPEKGWGVRTLDPIPAGEFVCEYAGEVLTSEEAQRRTH-LREYLDDDCDAYSIAD-------REWVDESPVGNTF  249 (364)
T ss_pred             eEEEecCCceeeecccccccCCCeeEEEeeEecChHHhhhccc-cccccccccccchhhh-------ccccccccccccc
Confidence            9999999999999999999999999999999999999986643 2344443211000000       0000000001111


Q ss_pred             CCCCcccCCCCceEEeCCCCCceeeeeccCCCCCceEEEEEeccCCCCccEEEEEEcCCCCCCCeeEeecCCCCCCCCCC
Q 024518          166 RPDDQKVENTPDYCIDAGAVGNVARFINHSCEPNLFVQCVLSSHHDLKLARVVLFAADNIPPLQELTYDYGYELDSVHGP  245 (266)
Q Consensus       166 ~~~~~~~~~~~~~~IDa~~~Gn~~RfiNHSC~PN~~~~~v~~~~~~~~~~~i~~fA~rdI~~GeELT~dYg~~~~~~~~~  245 (266)
                      ............++|||+..||++|||||||.||+.++.|+.++.++..++++|||+++|+||||||+|||..+......
T Consensus       250 ~~~~~~~~~~~~~~ida~~~GNv~RfinHSC~PN~~~~~v~~~~~~~~~~~i~ffa~~~I~p~~ELT~dYg~~~~~~~~~  329 (364)
T KOG1082|consen  250 VAPSLPGGPGRELLIDAKPHGNVARFINHSCSPNLLYQAVFQDEFVLLYLRIGFFALRDISPGEELTLDYGKAYKLLVQD  329 (364)
T ss_pred             cccccccCCCcceEEchhhcccccccccCCCCccceeeeeeecCCccchheeeeeeccccCCCcccchhhcccccccccc
Confidence            11111223345699999999999999999999999999999999999999999999999999999999999876521111


Q ss_pred             -C---CCccCeeeeeCCCCcccccC
Q 024518          246 -D---GKVKQMVCYCGAEGCRGRLF  266 (266)
Q Consensus       246 -~---~~~~~~~C~Cgs~~Crg~l~  266 (266)
                       .   .......|.||+.+||+.++
T Consensus       330 ~~~~~~~~~~~~c~c~~~~cr~~~~  354 (364)
T KOG1082|consen  330 GANIYTPVMKKNCNCGLEKCRGLLG  354 (364)
T ss_pred             cccccccccchhhcCCCHHhCcccC
Confidence             1   12356789999999999874

>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription] Back     alignment and domain information
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain Back     alignment and domain information
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription] Back     alignment and domain information
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only] Back     alignment and domain information
>COG2940 Proteins containing SET domain [General function prediction only] Back     alignment and domain information
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco Back     alignment and domain information
>PF05033 Pre-SET: Pre-SET motif; InterPro: IPR007728 This region is found in a number of histone lysine methyltransferases (HMTase), N-terminal to the SET domain; it is generally described as the pre-SET domain Back     alignment and domain information
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription] Back     alignment and domain information
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics] Back     alignment and domain information
>smart00468 PreSET N-terminal to some SET domains Back     alignment and domain information
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription] Back     alignment and domain information
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics] Back     alignment and domain information
>smart00508 PostSET Cysteine-rich motif following a subset of SET domains Back     alignment and domain information
>smart00570 AWS associated with SET domains Back     alignment and domain information
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1337 consensus N-methyltransferase [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query266
3k5k_A283 Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazolin 4e-29
2o8j_A281 Human Euchromatic Histone Methyltransferase 2 Lengt 5e-29
3hna_A287 Crystal Structure Of Catalytic Domain Of Human Euch 4e-28
2igq_A285 Human Euchromatic Histone Methyltransferase 1 Lengt 4e-28
3fpd_A261 G9a-Like Protein Lysine Methyltransferase Inhibitio 4e-28
4i51_A286 Methyltransferase Domain Of Human Euchromatic Histo 3e-27
1mvh_A299 Structure Of The Set Domain Histone Lysine Methyltr 2e-26
2r3a_A300 Methyltransferase Domain Of Human Suppressor Of Var 5e-25
3bo5_A290 Crystal Structure Of Methyltransferase Domain Of Hu 2e-24
1ml9_A302 Structure Of The Neurospora Set Domain Protein Dim- 2e-20
3ope_A222 Structural Basis Of Auto-Inhibitory Mechanism Of Hi 3e-16
4fmu_A278 Crystal Structure Of Methyltransferase Domain Of Hu 2e-13
3ooi_A232 Crystal Structure Of Human Histone-Lysine N-Methylt 3e-12
2w5y_A192 Binary Complex Of The Mixed Lineage Leukaemia (Mll1 2e-08
>pdb|3K5K|A Chain A, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A Potent Inhibitor Of Histone Lysine Methyltransferase, G9a Length = 283 Back     alignment and structure 
Iteration: 1

 Score =  124 bits (312), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 81/251 (32%), Positives = 118/251 (47%), Gaps = 52/251 (20%)
Query: 16  CDCRGNCLNSHDCSCAKLNSTDSKHYDFPYVHRDGGRLVEAKAV----VFECGPKCGCGP 71
           C C  +C +S +C C +L+          +  +DG  L E   +    +FEC   C C  
Sbjct: 64  CTCVDDC-SSSNCLCGQLSIR-------CWYDKDGRLLQEFNKIEPPLIFECNQACSCWR 115
Query: 72  DCINRTSQRGLKYRLEVYRTPKKGWAVRSWDFIPAGAPVCEYIGVLRRTEDLDNACDNEN 131
           +C NR  Q G+K RL++YRT K GW VR+   IP G  +CEY+G L    D +     ++
Sbjct: 116 NCKNRVVQSGIKVRLQLYRTAKMGWGVRALQTIPQGTFICEYVGEL--ISDAEADVREDD 173
Query: 132 NFIFDIDCLQTMXXXXXXXXXXXDVSISTIYNSDRPDDQKVENTPDYCIDAGAVGNVARF 191
           +++FD+D                              D +V     YCIDA   GN++RF
Sbjct: 174 SYLFDLD----------------------------NKDGEV-----YCIDARYYGNISRF 200
Query: 192 INHSCEPNLFVQCVLSSHHDLKLARVVLFAADNIPPLQELTYDYGYELDSVHGPDGKVKQ 251
           INH C+PN+    V   H DL+  R+  F++ +I   +EL +DYG         D K K 
Sbjct: 201 INHLCDPNIIPVRVFMLHQDLRFPRIAFFSSRDIRTGEELGFDYGDRF-----WDIKSKY 255
Query: 252 MVCYCGAEGCR 262
             C CG+E C+
Sbjct: 256 FTCQCGSEKCK 266
>pdb|2O8J|A Chain A, Human Euchromatic Histone Methyltransferase 2 Length = 281 Back     alignment and structure
>pdb|3HNA|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic Histone Methyltransferase 1 In Complex With Sah And Mono- Methylated H3k9 Peptide Length = 287 Back     alignment and structure
>pdb|2IGQ|A Chain A, Human Euchromatic Histone Methyltransferase 1 Length = 285 Back     alignment and structure
>pdb|3FPD|A Chain A, G9a-Like Protein Lysine Methyltransferase Inhibition By Bix- 01294 Length = 261 Back     alignment and structure
>pdb|4I51|A Chain A, Methyltransferase Domain Of Human Euchromatic Histone Methyltransferase 1, Mutant Y1211a Length = 286 Back     alignment and structure
>pdb|1MVH|A Chain A, Structure Of The Set Domain Histone Lysine Methyltransferase Clr4 Length = 299 Back     alignment and structure
>pdb|2R3A|A Chain A, Methyltransferase Domain Of Human Suppressor Of Variegation 3-9 Homolog 2 Length = 300 Back     alignment and structure
>pdb|3BO5|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Histone-Lysine N-Methyltransferase Setmar Length = 290 Back     alignment and structure
>pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain Protein Dim-5, A Histone Lysine Methyltransferase Length = 302 Back     alignment and structure
>pdb|3OPE|A Chain A, Structural Basis Of Auto-Inhibitory Mechanism Of Histone Methyltransferase Length = 222 Back     alignment and structure
>pdb|4FMU|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Set Domain- Containing Protein 2 Compound: Pr-Snf Length = 278 Back     alignment and structure
>pdb|3OOI|A Chain A, Crystal Structure Of Human Histone-Lysine N-Methyltransferase Nsd1 Set Domain In Complex With S-Adenosyl-L-Methionine Length = 232 Back     alignment and structure
>pdb|2W5Y|A Chain A, Binary Complex Of The Mixed Lineage Leukaemia (Mll1) Set Domain With The Cofactor Product S-Adenosylhomocysteine. Length = 192 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query266
1mvh_A299 Cryptic LOCI regulator 4; lysine methyltransferase 4e-75
1ml9_A302 Histone H3 methyltransferase DIM-5; adoMet-depende 6e-73
3bo5_A290 Histone-lysine N-methyltransferase setmar; SET dom 2e-67
2r3a_A300 Histone-lysine N-methyltransferase SUV39H2; histon 1e-65
3hna_A287 Histone-lysine N-methyltransferase, H3 lysine-9 sp 2e-62
3h6l_A278 Histone-lysine N-methyltransferase SETD2; SET doma 1e-53
3ope_A222 Probable histone-lysine N-methyltransferase ASH1L; 6e-51
3ooi_A232 Histone-lysine N-methyltransferase, H3 lysine-36 l 2e-49
2w5y_A192 Histone-lysine N-methyltransferase HRX; transcript 5e-36
3f9x_A166 Histone-lysine N-methyltransferase SETD8; methyltr 2e-33
1n3j_A119 A612L, histone H3 lysine methyltransferase; beta b 2e-21
2f69_A261 Histone-lysine N-methyltransferase, H3 lysine-4 sp 2e-16
3s8p_A273 Histone-lysine N-methyltransferase SUV420H1; SET d 2e-15
3rq4_A247 Histone-lysine N-methyltransferase SUV420H2; suppr 1e-10
2qpw_A149 PR domain zinc finger protein 2; methyltransferase 2e-08
3db5_A151 PR domain zinc finger protein 4; methyltransferase 3e-08
3ep0_A170 PR domain zinc finger protein 12; PR domain-contai 2e-07
3dal_A196 PR domain zinc finger protein 1; methyltransferase 3e-06
3ihx_A152 PR domain zinc finger protein 10; PRDM10, methyltr 4e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Length = 299 Back     alignment and structure
 Score =  229 bits (586), Expect = 4e-75
 Identities = 78/268 (29%), Positives = 115/268 (42%), Gaps = 43/268 (16%)

Query: 10  PTTAIGCDCRG----NCLNSHDCSCAKLNSTDSKHYDFPYVHRDGGRLVEAKAVVFECGP 65
           P    GC+C      +  N   C C       +    F Y    G    +  AV++EC  
Sbjct: 63  PNFQSGCNCSSLGGCDLNNPSRCECLDDLDEPT---HFAY-DAQGRVRADTGAVIYECNS 118

Query: 66  KCGCGPDCINRTSQRGLKYRLEVYRTPKKGWAVRSWDFIPAGAPVCEYIGVLRRTEDLDN 125
            C C  +C NR  QRG    LE+++T +KGW VRS  F PAG  +  Y+G +  + +   
Sbjct: 119 FCSCSMECPNRVVQRGRTLPLEIFKTKEKGWGVRSLRFAPAGTFITCYLGEVITSAEAAK 178

Query: 126 ACDNENNFIFDIDCLQTMRGLGGRERRLRDVSISTIYNSDRPDDQKVENTPDYCIDAGAV 185
                                  R++   D  I+ +++ D  DD       +Y +DA   
Sbjct: 179 -----------------------RDKNYDDDGITYLFDLDMFDDA-----SEYTVDAQNY 210

Query: 186 GNVARFINHSCEPNLFVQCVLSSHHDLKLARVVLFAADNIPPLQELTYDYGYELDSVHGP 245
           G+V+RF NHSC PN+ +   + +H    +  +  FA  +I PL+ELT+DY    D     
Sbjct: 211 GDVSRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFDYAGAKDFSPVQ 270

Query: 246 DGKVKQ-------MVCYCGAEGCRGRLF 266
             K +Q         C CG+  CRG LF
Sbjct: 271 SQKSQQNRISKLRRQCKCGSANCRGWLF 298
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Length = 302 Back     alignment and structure
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Length = 290 Back     alignment and structure
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} Length = 300 Back     alignment and structure
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Length = 287 Back     alignment and structure
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Length = 222 Back     alignment and structure
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Length = 232 Back     alignment and structure
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Length = 192 Back     alignment and structure
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 2bqz_A* Length = 166 Back     alignment and structure
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Length = 119 Back     alignment and structure
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Length = 261 Back     alignment and structure
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} Length = 273 Back     alignment and structure
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} Length = 247 Back     alignment and structure
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* Length = 149 Back     alignment and structure
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens} Length = 151 Back     alignment and structure
>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens} Length = 170 Back     alignment and structure
>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens} Length = 196 Back     alignment and structure
>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens} Length = 152 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query266
1mvh_A299 Cryptic LOCI regulator 4; lysine methyltransferase 100.0
3hna_A287 Histone-lysine N-methyltransferase, H3 lysine-9 sp 100.0
1ml9_A302 Histone H3 methyltransferase DIM-5; adoMet-depende 100.0
2r3a_A300 Histone-lysine N-methyltransferase SUV39H2; histon 100.0
3bo5_A290 Histone-lysine N-methyltransferase setmar; SET dom 100.0
3ope_A222 Probable histone-lysine N-methyltransferase ASH1L; 100.0
3ooi_A232 Histone-lysine N-methyltransferase, H3 lysine-36 l 100.0
3h6l_A278 Histone-lysine N-methyltransferase SETD2; SET doma 100.0
2w5y_A192 Histone-lysine N-methyltransferase HRX; transcript 100.0
3f9x_A166 Histone-lysine N-methyltransferase SETD8; methyltr 100.0
2f69_A261 Histone-lysine N-methyltransferase, H3 lysine-4 sp 99.98
1n3j_A119 A612L, histone H3 lysine methyltransferase; beta b 99.97
2qpw_A149 PR domain zinc finger protein 2; methyltransferase 99.97
1h3i_A293 Histone H3 lysine 4 specific methyltransferase; 2. 99.96
3s8p_A273 Histone-lysine N-methyltransferase SUV420H1; SET d 99.96
3rq4_A247 Histone-lysine N-methyltransferase SUV420H2; suppr 99.93
3ep0_A170 PR domain zinc finger protein 12; PR domain-contai 99.9
3db5_A151 PR domain zinc finger protein 4; methyltransferase 99.88
3dal_A196 PR domain zinc finger protein 1; methyltransferase 99.86
3ray_A237 PR domain-containing protein 11; structural genomi 99.78
3ihx_A152 PR domain zinc finger protein 10; PRDM10, methyltr 99.69
3n71_A 490 Histone lysine methyltransferase SMYD1; heart deve 99.0
3qwp_A 429 SET and MYND domain-containing protein 3; SMYD3,SE 98.96
3qww_A 433 SET and MYND domain-containing protein 2; methyltr 98.89
3qxy_A 449 N-lysine methyltransferase SETD6; epigenetics, pro 97.46
2h21_A 440 Ribulose-1,5 bisphosphate carboxylase/oxygenase; S 97.1
3smt_A 497 Histone-lysine N-methyltransferase SETD3; histone 96.92
3qww_A 433 SET and MYND domain-containing protein 2; methyltr 91.31
3n71_A 490 Histone lysine methyltransferase SMYD1; heart deve 90.21
3qwp_A 429 SET and MYND domain-containing protein 3; SMYD3,SE 89.98
3smt_A 497 Histone-lysine N-methyltransferase SETD3; histone 83.7
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Back     alignment and structure
Probab=100.00  E-value=1.6e-56  Score=393.36  Aligned_cols=227  Identities=33%  Similarity=0.694  Sum_probs=170.1

Q ss_pred             cCCCCCCC--CCCCCcccCC--CCCC--CCCcccccccccCCCCCCCcccccCCCeee-eccceEEEcCCCCCCCCCCCC
Q 024518            3 VAKGVKLP--TTAIGCDCRG--NCLN--SHDCSCAKLNSTDSKHYDFPYVHRDGGRLV-EAKAVVFECGPKCGCGPDCIN   75 (266)
Q Consensus         3 ~~~~~~~~--~~~~gC~C~~--~C~~--~~~C~C~~~~~~~~~~~~~~y~~~~~g~l~-~~~~~~~EC~~~C~C~~~C~N   75 (266)
                      +..|+...  .+..||+|.+  +|.+  +.+|+|.++....   ..|+|.  .+|+|. ....++|||++.|+|+..|+|
T Consensus        54 ~~~~~~~~~~~~~~gC~C~~~~~C~~~~~~~C~C~~~~~~~---~~~~y~--~~g~l~~~~~~~i~EC~~~C~C~~~C~N  128 (299)
T 1mvh_A           54 LTQGVIPPDPNFQSGCNCSSLGGCDLNNPSRCECLDDLDEP---THFAYD--AQGRVRADTGAVIYECNSFCSCSMECPN  128 (299)
T ss_dssp             ECTTCCCCCGGGCCCCCCCCSSSSCTTCTTTCSSSTTCCSS---CCCSBC--TTSSBCTTCCSEEECCCTTSCSCTTCTT
T ss_pred             cCCCcCcCCCcCCCCCcCcCCCCcCCCCCCCCccccccccc---cccccC--CCCceeecCCCCeEeCCCCCCCCCCcCC
Confidence            45566633  3569999996  8987  4789999876321   267886  577773 456789999999999999999


Q ss_pred             cccccCCcccEEEEEeCCCceeEEeCCCCCCCCeEEEeeeEEeChhhhhhhcc----CCCceEEecchhhhhccCCCcee
Q 024518           76 RTSQRGLKYRLEVYRTPKKGWAVRSWDFIPAGAPVCEYIGVLRRTEDLDNACD----NENNFIFDIDCLQTMRGLGGRER  151 (266)
Q Consensus        76 r~~q~~~~~~l~v~~t~~kG~Gv~a~~~I~~G~~I~ey~Gevi~~~e~~~~~~----~~~~y~~~l~~~~~~~~~~~~~~  151 (266)
                      |++|+|.+.+|+|++++.+||||||+++|++|+||+||+|||++.+|++++..    ....|+|+++...          
T Consensus       129 r~~q~g~~~~l~v~~t~~~G~Gv~A~~~I~kG~~I~EY~Gevi~~~ea~~R~~~y~~~~~~Y~f~l~~~~----------  198 (299)
T 1mvh_A          129 RVVQRGRTLPLEIFKTKEKGWGVRSLRFAPAGTFITCYLGEVITSAEAAKRDKNYDDDGITYLFDLDMFD----------  198 (299)
T ss_dssp             CTGGGCCCSCEEEEECSSSSEEEEESSCBCTTCEEEECCCEEEEHHHHHHHHTTCCSCSCCCEEEECSSC----------
T ss_pred             ccccccccccEEEEEcCCCcceEeeCceeCCCCEEEEeeeEECcHHHHHHHHHhhhccCceEEEEecCCC----------
Confidence            99999999999999999999999999999999999999999999999886543    2467888774210          


Q ss_pred             ecccccceeecCCCCCCCcccCCCCceEEeCCCCCceeeeeccCCCCCceEEEEEeccCCCCccEEEEEEcCCCCCCCee
Q 024518          152 RLRDVSISTIYNSDRPDDQKVENTPDYCIDAGAVGNVARFINHSCEPNLFVQCVLSSHHDLKLARVVLFAADNIPPLQEL  231 (266)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~IDa~~~Gn~~RfiNHSC~PN~~~~~v~~~~~~~~~~~i~~fA~rdI~~GeEL  231 (266)
                                            ....++|||+.+||+||||||||+||+.++.|+.+..++..++|+|||+|||++||||
T Consensus       199 ----------------------~~~~~~IDa~~~GN~aRfiNHSC~PN~~~~~v~~~~~~~~~~~i~~~A~rdI~~GEEL  256 (299)
T 1mvh_A          199 ----------------------DASEYTVDAQNYGDVSRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEEL  256 (299)
T ss_dssp             ----------------------SSSCEEEECSSEECGGGGCEECSSCSEEEEEEESCTTCTTSCEEEEEESSCBCTTCBC
T ss_pred             ----------------------CCccEEEeCcccCChhheEeecCCCCeEEEEEEeecCCCCceEEEEEEccCcCCCCEE
Confidence                                  0124899999999999999999999999988888777778899999999999999999


Q ss_pred             EeecCCCCCCCCC-CC------CCccCeeeeeCCCCcccccC
Q 024518          232 TYDYGYELDSVHG-PD------GKVKQMVCYCGAEGCRGRLF  266 (266)
Q Consensus       232 T~dYg~~~~~~~~-~~------~~~~~~~C~Cgs~~Crg~l~  266 (266)
                      ||||++.+|.... .+      .....+.|+|||++|||+||
T Consensus       257 t~dY~~~~~~~~~~~~~~~~~~~~k~~~~C~CGs~~Crg~l~  298 (299)
T 1mvh_A          257 TFDYAGAKDFSPVQSQKSQQNRISKLRRQCKCGSANCRGWLF  298 (299)
T ss_dssp             EECCCTTSSSSCCC----------------------------
T ss_pred             EEEcCCcccccccccccccccccccCCcCcCCCCCCCccccC
Confidence            9999998872110 00      00123699999999999997
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Back     alignment and structure
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Back     alignment and structure
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} Back     alignment and structure
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Back     alignment and structure
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Back     alignment and structure
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Back     alignment and structure
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Back     alignment and structure
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A* Back     alignment and structure
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Back     alignment and structure
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Back     alignment and structure
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* Back     alignment and structure
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A Back     alignment and structure
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} Back     alignment and structure
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} Back     alignment and structure
>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens} Back     alignment and structure
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens} Back     alignment and structure
>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens} Back     alignment and structure
>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens} Back     alignment and structure
>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens} Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A* Back     alignment and structure
>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A* Back     alignment and structure
>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens} Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 266
d1ml9a_284 b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [T 6e-43
d1mvha_269 b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (S 4e-42
d2f69a2171 b.85.7.1 (A:194-364) Histone H3 K4-specific methyl 8e-22
d2g46a1119 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Meth 8e-12
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Length = 284 Back     information, alignment and structure

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: Dim-5
species: Fungus (Neurospora crassa) [TaxId: 5141]

 Score =  145 bits (367), Expect = 6e-43
 Identities = 65/275 (23%), Positives = 103/275 (37%), Gaps = 38/275 (13%)

Query: 3   VAKGVKLPTTA--IGCDCRGNCL-NSHDCSCAKLNSTDSKHYDFPYVHR----------- 48
           + K V +   +  +GC C  +       C C    + DS     PY  +           
Sbjct: 27  IGKNVPVADQSFRVGCSCASDEECMYSTCQCLDEMAPDSDEEADPYTRKKRFAYYSQGAK 86

Query: 49  ---DGGRLVEAKAVVFECGPKCGCGPDCINRTSQRGLKYRLEVYRTPKKGWAVRSWDFIP 105
                 R+++++  ++EC   C C  DC NR  +RG    L+++RT  +GW V+    I 
Sbjct: 87  KGLLRDRVLQSQEPIYECHQGCACSKDCPNRVVERGRTVPLQIFRTKDRGWGVKCPVNIK 146

Query: 106 AGAPVCEYIGVLRRTEDLDNACDNENNFIFDIDCLQTMRGLGGRERRLRDVSISTIYNSD 165
            G  V  Y+G +  +E+ D               L  +                    SD
Sbjct: 147 RGQFVDRYLGEIITSEEADRRRAESTIARRKDVYLFALD-----------------KFSD 189

Query: 166 RPDDQKVENTPDYCIDAGAVGNVARFINHSCEPNLFVQCVLSSHHDLKLARVVLFAADNI 225
                 +       +D   +    RFINHSC+PN+ +   +  H D  +  + LFA  +I
Sbjct: 190 PDSLDPLLAGQPLEVDGEYMSGPTRFINHSCDPNMAIFARVGDHADKHIHDLALFAIKDI 249

Query: 226 PPLQELTYDYGYELDSV----HGPDGKVKQMVCYC 256
           P   ELT+DY   L  +    H P    +   C C
Sbjct: 250 PKGTELTFDYVNGLTGLESDAHDPSKISEMTKCLC 284
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 269 Back     information, alignment and structure
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 171 Back     information, alignment and structure
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Length = 119 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query266
d1mvha_269 SET domain of Clr4 {Fission yeast (Schizosaccharom 100.0
d1ml9a_284 Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} 100.0
d2f69a2171 Histone H3 K4-specific methyltransferase SET7/9 ca 99.97
d2g46a1119 Viral histone H3 Lysine 27 Methyltransferase {Para 99.94
d2h2ja2261 RuBisCo LSMT catalytic domain {Garden pea (Pisum s 98.58
d2h2ja2261 RuBisCo LSMT catalytic domain {Garden pea (Pisum s 91.4
d1opsa_64 Type III antifreeze protein, AFP III {Ocean pout ( 82.66
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: SET domain of Clr4
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=4.6e-53  Score=364.30  Aligned_cols=203  Identities=33%  Similarity=0.685  Sum_probs=168.7

Q ss_pred             ccCCCCCCCC--CCCCcccCCC----CCCCCCcccccccccCCCCCCCcccccCCCeee-eccceEEEcCCCCCCCCCCC
Q 024518            2 QVAKGVKLPT--TAIGCDCRGN----CLNSHDCSCAKLNSTDSKHYDFPYVHRDGGRLV-EAKAVVFECGPKCGCGPDCI   74 (266)
Q Consensus         2 ~~~~~~~~~~--~~~gC~C~~~----C~~~~~C~C~~~~~~~~~~~~~~y~~~~~g~l~-~~~~~~~EC~~~C~C~~~C~   74 (266)
                      ++.+|+..+.  +..||+|...    |.+...|+|.+....   ...++|.  ..|++. ....++|||++.|+|+.+|.
T Consensus        52 ~~~~~~~~~~~~~~~gC~C~~~~~C~~~~~~~C~C~~~~~~---~~~~~~~--~~~rl~~~~~~~i~EC~~~C~C~~~C~  126 (269)
T d1mvha_          52 RLTQGVIPPDPNFQSGCNCSSLGGCDLNNPSRCECLDDLDE---PTHFAYD--AQGRVRADTGAVIYECNSFCSCSMECP  126 (269)
T ss_dssp             EECTTCCCCCGGGCCCCCCCCSSSSCTTCTTTCSSSTTCCS---SCCCSBC--TTSSBCTTCCSEEECCCTTSCSCTTCT
T ss_pred             ccCCCCCcCCccccCCCCCCCCCCcCCCCCcceecccccCC---CCccccc--cCCccccCcCCeEEECCCCCCCCCCCC
Confidence            3567776543  6889999863    445677999886543   1245664  567764 56679999999999999999


Q ss_pred             CcccccCCcccEEEEEeCCCceeEEeCCCCCCCCeEEEeeeEEeChhhhhhhcc----CCCceEEecchhhhhccCCCce
Q 024518           75 NRTSQRGLKYRLEVYRTPKKGWAVRSWDFIPAGAPVCEYIGVLRRTEDLDNACD----NENNFIFDIDCLQTMRGLGGRE  150 (266)
Q Consensus        75 Nr~~q~~~~~~l~v~~t~~kG~Gv~a~~~I~~G~~I~ey~Gevi~~~e~~~~~~----~~~~y~~~l~~~~~~~~~~~~~  150 (266)
                      ||++|+|++.+|+|++|+.+||||||+++|++|+||+||+|||++.++++++..    ....|+|++....         
T Consensus       127 Nr~~q~g~~~~leV~~t~~~G~GvfA~~~I~kGt~I~eY~Gevi~~~e~~~R~~~y~~~~~~~~~~l~~~~---------  197 (269)
T d1mvha_         127 NRVVQRGRTLPLEIFKTKEKGWGVRSLRFAPAGTFITCYLGEVITSAEAAKRDKNYDDDGITYLFDLDMFD---------  197 (269)
T ss_dssp             TCTGGGCCCSCEEEEECSSSSEEEEESSCBCTTCEEEECCCEEEEHHHHHHHHTTCCSCSCCCEEEECSSC---------
T ss_pred             CeecCCCCccCEEEEEcCCCCeEEEeCcccCCCceEEEecceEEcHHHHHHHHHhHhhcCCcchhheeccc---------
Confidence            999999999999999999999999999999999999999999999999986644    2345666653211         


Q ss_pred             eecccccceeecCCCCCCCcccCCCCceEEeCCCCCceeeeeccCCCCCceEEEEEeccCCCCccEEEEEEcCCCCCCCe
Q 024518          151 RRLRDVSISTIYNSDRPDDQKVENTPDYCIDAGAVGNVARFINHSCEPNLFVQCVLSSHHDLKLARVVLFAADNIPPLQE  230 (266)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IDa~~~Gn~~RfiNHSC~PN~~~~~v~~~~~~~~~~~i~~fA~rdI~~GeE  230 (266)
                                             ....++|||+..||+||||||||+||+.++.|++++.+...++|+|||+|||++|||
T Consensus       198 -----------------------~~~~~~iDa~~~GN~aRFiNHSC~PN~~~~~v~~~~~~~~~~~i~~fA~rdI~~GEE  254 (269)
T d1mvha_         198 -----------------------DASEYTVDAQNYGDVSRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEE  254 (269)
T ss_dssp             -----------------------SSSCEEEECSSEECGGGGCEECSSCSEEEEEEESCTTCTTSCEEEEEESSCBCTTCB
T ss_pred             -----------------------ccccceeeeeecCcceEEeecCCCCCcEEEEEEecCCcCccceEEEEECCccCCCCE
Confidence                                   112489999999999999999999999999999998888999999999999999999


Q ss_pred             eEeecCCCCCC
Q 024518          231 LTYDYGYELDS  241 (266)
Q Consensus       231 LT~dYg~~~~~  241 (266)
                      ||||||+..+.
T Consensus       255 Lt~DYG~~~d~  265 (269)
T d1mvha_         255 LTFDYAGAKDF  265 (269)
T ss_dssp             CEECCCTTSSS
T ss_pred             EEEecCCCcCC
Confidence            99999987654
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Back     information, alignment and structure
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Back     information, alignment and structure
>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
>d1opsa_ b.85.1.1 (A:) Type III antifreeze protein, AFP III {Ocean pout (Macrozoarces americanus), different isoforms [TaxId: 8199]} Back     information, alignment and structure