Citrus Sinensis ID: 024523

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260------
Protein Sequence
MGRALLSHFLIVSNSSPRLVSSLKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYCNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVDSLS
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHcccccHHccHHHHccccccccccccccHHHcccccccccccccccccccccccccccccccccccccEEEcccccccccHHHHHHHHHHHHHHHHccccEEEEcccccccccccHHHHHHHHHHHHHHHHHcccccccccEEEccccHHHHHHHHHHHccccccccccccHHHHHHHHcccccccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHccccccHHccccccccccccHHHccccccccccccccccccccEEEEEEEEccccccccccccccccEEEEEEccccccEHHHHHHcHHHHHHHccccEEEEEEcHHHHccccccHHHHHHHHHHHHHHHHHcccccccEEEEEHHHccHHHHHHHHHHccccHHHHHccHHHHHHHHccccccccHHHHcHHHHHHHHHHcccccEEEccHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEHcHcccc
Coil and Loop (DISEMBL)
MGRALLSHFLIvsnssprlvsslkcrsrgglpskycktpglirqnrnlathngcgfrcycnvslseptapvassssvkkrivsgvqptgsihlGNYLGAIKNWIALQNSYETLFFIVDLHaitlpydtqqLSKATRETAAIYLACgidnskasVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEkshkaggenvGVALLTYPVLMASDILlyqsdfvpvgedqKQHLELTRELAERVNYLYGgrkwkklggrggaifkvdsls
Flexible Loop (DISEMBL)
MGRALLSHFlivsnssprlvsslkcrsrgglpskycktpglIRQNRNLATHNGCGFRCYCNVSLSEPTapvassssvkKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLyggrkwkklggrggaifkvdsls
Low Complexity Region (SEG)
MGRALLSHFLIVSNSSPRLVSSLKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYCNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNylyggrkwkklggrggAIFKVDSLS
Disordered region (IsUnstruct)
*****LSHFLIVS******V**LKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYCNVSL****************IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFK*****
Disordered Region (DISOPRED)
******SHFLIVSNSSPR***************************************************************VSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQF**************ALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVDSL*
Disordered Region (DISEMBL)
MGRALLSHFLIVSNSSPRLVSSLKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYCNVSLS**************RIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVDSLS
Disordered Region (DISPRO)
****LLS*FLIVSNSSPRLVSSLKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYCNVSLS***********VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFK*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGRALLSHFLIVSNSSPRLVSSLKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYCNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVDSLS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	266	2.2.26 [Sep-21-2011]
Q8DHG3	330	Tryptophan--tRNA ligase O	yes	no	0.616	0.496	0.660	2e-61
Q7VBM9	339	Tryptophan--tRNA ligase O	yes	no	0.612	0.480	0.642	6e-61
Q7NCG8	336	Tryptophan--tRNA ligase O	yes	no	0.654	0.517	0.594	3e-60
Q8YXE4	335	Tryptophan--tRNA ligase O	yes	no	0.639	0.507	0.608	5e-59
Q7TTU9	337	Tryptophan--tRNA ligase O	yes	no	0.639	0.504	0.587	2e-58
P73655	337	Tryptophan--tRNA ligase O	N/A	no	0.627	0.495	0.625	2e-58
Q7TV34	337	Tryptophan--tRNA ligase O	yes	no	0.639	0.504	0.598	4e-58
Q7V286	338	Tryptophan--tRNA ligase O	yes	no	0.639	0.502	0.593	7e-58
Q7VIP6	332	Tryptophan--tRNA ligase O	yes	no	0.646	0.518	0.560	8e-54
Q8R9X8	327	Tryptophan--tRNA ligase O	yes	no	0.620	0.504	0.586	1e-53

>sp|Q8DHG3|SYW_THEEB Tryptophan--tRNA ligase OS=Thermosynechococcus elongatus (strain BP-1) GN=trpS PE=3 SV=1

 Score =  236 bits (601), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 109/165 (66%), Positives = 131/165 (79%), Gaps = 1/165 (0%)

Query: 81  IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAA 140
           ++SGVQPTGS+HLGNYLGAI+NW+A Q  YE  F +VDLHAIT+P+D  +L+  T   AA
Sbjct: 1   MLSGVQPTGSLHLGNYLGAIRNWVAGQAEYENYFCVVDLHAITVPHDPAELAANTYTVAA 60

Query: 141 IYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVA 200
           +YLACGID + A++FVQSHV AH EL WLL+  TP+ WL  MIQFKEK+ K  GENV   
Sbjct: 61  LYLACGIDPAHATIFVQSHVSAHAELTWLLNCITPLNWLEDMIQFKEKAVKQ-GENVAAG 119

Query: 201 LLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYG 245
           LL YPVLMA+DILLY +D VPVGEDQKQHLELTR++A RVNYL+ 
Sbjct: 120 LLDYPVLMAADILLYDADLVPVGEDQKQHLELTRDIAARVNYLFA 164

Thermosynechococcus elongatus (strain BP-1) (taxid: 197221)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 2

>sp|Q7VBM9|SYW_PROMA Tryptophan--tRNA ligase OS=Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) GN=trpS PE=3 SV=1

 Score =  234 bits (596), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 106/165 (64%), Positives = 136/165 (82%), Gaps = 2/165 (1%)

Query: 78  KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
           KKR++SGVQPTG+IH+GN+LGAI+NW++LQN Y+T   +VDLHAIT+P+D QQL + T  
Sbjct: 3   KKRVLSGVQPTGAIHIGNWLGAIRNWVSLQNEYDTYVCVVDLHAITVPHDPQQLKENTLR 62

Query: 138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 197
           TAA+Y+ACG+D  K S+FVQSH+ AH EL WLL+  TP+ W+ +MIQFKEK+ K  G+NV
Sbjct: 63  TAALYVACGMDPKKCSIFVQSHISAHSELCWLLNCVTPLNWMERMIQFKEKAIKQ-GDNV 121

Query: 198 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA-ERVN 241
            + LL YPVLMA+DILLY +D VPVGEDQKQHLEL R++A +RVN
Sbjct: 122 SIGLLDYPVLMAADILLYDADLVPVGEDQKQHLELARDIAQQRVN 166

Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) (taxid: 167539)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

>sp|Q7NCG8|SYW_GLOVI Tryptophan--tRNA ligase OS=Gloeobacter violaceus (strain PCC 7421) GN=trpS PE=3 SV=1

 Score =  231 bits (590), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 104/175 (59%), Positives = 132/175 (75%), Gaps = 1/175 (0%)

Query: 71  VASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQ 130
           +   S+  KRI+SG QPTG +HLGNYLGA++NW++ Q  Y++ F +VDLHA+T+P +  +
Sbjct: 1   MPDDSTAPKRILSGAQPTGQLHLGNYLGAVRNWVSEQRQYDSYFCVVDLHALTVPQEAAE 60

Query: 131 LSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSH 190
           L  ATR TAA+YLACGID  +++VFVQSHV AH EL WL +  TPI WL +MIQFKEK+ 
Sbjct: 61  LRAATRRTAALYLACGIDPERSTVFVQSHVSAHTELTWLFNCLTPINWLERMIQFKEKAI 120

Query: 191 KAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYG 245
           K  GE VG+ L  YPVL A+DILLY+   VPVGEDQ+QHLELTR++A R N  YG
Sbjct: 121 KL-GEEVGIGLFDYPVLQAADILLYEPHLVPVGEDQRQHLELTRDIARRFNDRYG 174

Gloeobacter violaceus (strain PCC 7421) (taxid: 251221)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

>sp|Q8YXE4|SYW_NOSS1 Tryptophan--tRNA ligase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=trpS PE=3 SV=1

 Score =  228 bits (580), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 104/171 (60%), Positives = 132/171 (77%), Gaps = 1/171 (0%)

Query: 78  KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
           K+R++SGVQPTG++HLGNYLGAI+NW+ +Q+ Y+  F +VDLHAIT+P++   L+  T  
Sbjct: 3   KQRVLSGVQPTGNLHLGNYLGAIRNWVEIQDQYDNFFCVVDLHAITVPHNPATLAADTYA 62

Query: 138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 197
            AA+YLACGID   +++FVQSHV AH EL W L+  TP+ WL  MIQFKEK+ K  GENV
Sbjct: 63  IAALYLACGIDLKYSNIFVQSHVSAHSELAWFLNCITPLNWLQDMIQFKEKAVKQ-GENV 121

Query: 198 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRK 248
           G  LL YPVLMA+DILLYQ+D VPVGEDQKQHLELTR++  R N+ +   K
Sbjct: 122 GAGLLIYPVLMAADILLYQADKVPVGEDQKQHLELTRDIVNRFNHQFAKDK 172

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

>sp|Q7TTU9|SYW_SYNPX Tryptophan--tRNA ligase OS=Synechococcus sp. (strain WH8102) GN=trpS PE=3 SV=1

 Score =  225 bits (574), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 101/172 (58%), Positives = 136/172 (79%), Gaps = 2/172 (1%)

Query: 78  KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
           + R++SGVQPTG++HLGN+LGAI+NW+ LQ++++T   +VDLHAIT+P+D  +L+  T  
Sbjct: 3   RPRVLSGVQPTGALHLGNWLGAIRNWVDLQDTHDTFVCVVDLHAITVPHDPARLADDTLN 62

Query: 138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 197
           TAA+YLACG+D  + S+F+QS V AH EL WLL+  TP+ WL +MIQFKEK+ K  G+NV
Sbjct: 63  TAALYLACGMDPQRCSIFIQSQVAAHSELCWLLNCVTPLNWLERMIQFKEKAVKQ-GDNV 121

Query: 198 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA-ERVNYLYGGRK 248
            V LL YPVLMA+DILLY +D VPVGEDQKQHLEL R++A +R+N  +G  +
Sbjct: 122 SVGLLDYPVLMAADILLYDADLVPVGEDQKQHLELARDIAQQRINARFGSEE 173

Synechococcus sp. (strain WH8102) (taxid: 84588)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

>sp|P73655|SYW_SYNY3 Tryptophan--tRNA ligase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=trpS PE=3 SV=2

 Score =  225 bits (574), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 105/168 (62%), Positives = 132/168 (78%), Gaps = 1/168 (0%)

Query: 78  KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
           K RI+SGVQPTG++HLGNYLGAI++W+  Q  Y+  F +VDLHAIT+P++ Q L++ T  
Sbjct: 3   KPRILSGVQPTGNLHLGNYLGAIRSWVEQQQHYDNFFCVVDLHAITVPHNPQTLAQDTLT 62

Query: 138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 197
            AA+YLACGID   +++FVQSHV AH EL WLL+  TP+ WL +MIQFKEK+ K  GENV
Sbjct: 63  IAALYLACGIDLQYSTIFVQSHVAAHSELAWLLNCVTPLNWLERMIQFKEKAVKQ-GENV 121

Query: 198 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYG 245
            V LL YPVLMA+DILLY +D VPVGEDQKQHLELTR++  R+N  +G
Sbjct: 122 SVGLLDYPVLMAADILLYDADKVPVGEDQKQHLELTRDIVIRINDKFG 169

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

>sp|Q7TV34|SYW_PROMM Tryptophan--tRNA ligase OS=Prochlorococcus marinus (strain MIT 9313) GN=trpS PE=3 SV=1

 Score =  224 bits (572), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 103/172 (59%), Positives = 137/172 (79%), Gaps = 2/172 (1%)

Query: 78  KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
           + R++SGVQPTG++HLGN+LGAI+NW+ LQ+S++T   +VDLHAIT+P+D ++L++ +  
Sbjct: 3   RPRVLSGVQPTGALHLGNWLGAIRNWVDLQSSHDTYVCVVDLHAITVPHDPERLAEESLS 62

Query: 138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 197
           TAA+YLACG+D    S+FVQS V AH EL WLL+  TP+ WL +MIQFKEKS K  G+NV
Sbjct: 63  TAALYLACGMDPDLCSIFVQSQVSAHSELCWLLNCVTPLNWLERMIQFKEKSVKQ-GDNV 121

Query: 198 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA-ERVNYLYGGRK 248
            V LL YPVLMA+DILLY +D VPVGEDQKQHLEL R++A +R+N  +G  +
Sbjct: 122 SVGLLDYPVLMAADILLYDADLVPVGEDQKQHLELARDIAQQRINARFGSEE 173

Prochlorococcus marinus (strain MIT 9313) (taxid: 74547)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

>sp|Q7V286|SYW_PROMP Tryptophan--tRNA ligase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=trpS PE=3 SV=1

 Score =  223 bits (569), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 102/172 (59%), Positives = 132/172 (76%), Gaps = 2/172 (1%)

Query: 78  KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
           KKRI+SGVQPTG +H+GN+LGAI NW+ LQ  +ET   +VDLHAIT  YDT+QLSK T  
Sbjct: 4   KKRILSGVQPTGDLHIGNWLGAINNWVELQEKHETFLCVVDLHAITTEYDTKQLSKNTLS 63

Query: 138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 197
           TAA+Y+ACGI+    S+FVQS + AH EL W+L+  TPI W+ +MIQFKEKS + G  NV
Sbjct: 64  TAALYIACGINPKICSIFVQSQISAHSELCWILNCMTPINWMERMIQFKEKSIQQGN-NV 122

Query: 198 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA-ERVNYLYGGRK 248
            + L  YP+LMA+DILLY +D+VPVGEDQKQHLEL +++A +R+N  +G  +
Sbjct: 123 SIGLFDYPILMAADILLYDADYVPVGEDQKQHLELAKDIAQQRINAKFGKEE 174

Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) (taxid: 59919)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

>sp|Q7VIP6|SYW_HELHP Tryptophan--tRNA ligase OS=Helicobacter hepaticus (strain ATCC 51449 / 3B1) GN=trpS PE=3 SV=1

 Score =  210 bits (535), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 97/173 (56%), Positives = 126/173 (72%), Gaps = 1/173 (0%)

Query: 73  SSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLS 132
           S +S KKRI SG+QPTG+IHLGNYLGA+++W+  Q  YE +F +V+ HAIT+  D Q+L 
Sbjct: 2   SHTSSKKRIFSGIQPTGNIHLGNYLGAVRHWVDSQEQYENIFCVVNSHAITIRQDPQELQ 61

Query: 133 KATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA 192
             T E A I LACGID  K+ +F+QS +  H  L W+L    P+G +++M QFK+KS+K 
Sbjct: 62  NKTYELAGILLACGIDTKKSHLFIQSQIDEHAALAWILDCNIPMGDMSRMTQFKDKSNK- 120

Query: 193 GGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYG 245
             +N+ V L  YP LMA+DILLYQ+DFVPVGEDQKQHLELTR++A R N  YG
Sbjct: 121 NPKNINVGLFNYPALMAADILLYQADFVPVGEDQKQHLELTRDVAMRFNRDYG 173

Helicobacter hepaticus (strain ATCC 51449 / 3B1) (taxid: 235279)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

>sp|Q8R9X8|SYW_THETN Tryptophan--tRNA ligase OS=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=trpS PE=3 SV=1

 Score =  210 bits (534), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 98/167 (58%), Positives = 127/167 (76%), Gaps = 2/167 (1%)

Query: 79  KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
           KR+ SGVQP+G IH+GNYLGA++ ++ALQ+ Y+  F +VDLHA+T+P D  +L K T E 
Sbjct: 2   KRVFSGVQPSGDIHIGNYLGAMRQFVALQDDYDCFFCVVDLHALTVPQDPVELKKNTIEL 61

Query: 139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
           AA+Y+A G+D  K ++FVQSHV AH EL WLL   T  G L++M QFKEKS   G E+V 
Sbjct: 62  AALYMAIGLDPKKVTLFVQSHVSAHAELAWLLQCITYFGELSRMTQFKEKSK--GKESVS 119

Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYG 245
           V L TYP LMA+DILLY++ +VPVGEDQKQHLELTR++A+R N  +G
Sbjct: 120 VGLFTYPDLMAADILLYKTHYVPVGEDQKQHLELTRDVAQRFNNRFG 166

Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (taxid: 273068)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	266
255550960	412	tryptophanyl-tRNA synthetase, putative [	0.958	0.618	0.816	1e-117
225429361	416	PREDICTED: tryptophanyl-tRNA synthetase	0.973	0.622	0.790	1e-116
449436894	414	PREDICTED: tryptophan--tRNA ligase-like	0.962	0.618	0.779	1e-112
224075399	403	predicted protein [Populus trichocarpa]	0.815	0.538	0.865	1e-108
356518366	393	PREDICTED: tryptophanyl-tRNA synthetase-	0.774	0.524	0.844	6e-99
356510049	398	PREDICTED: tryptophanyl-tRNA synthetase-	0.699	0.467	0.919	4e-97
57899972	399	putative tryptophanyl-tRNA synthetase [O	0.909	0.606	0.698	1e-95
357136379	399	PREDICTED: tryptophanyl-tRNA synthetase-	0.909	0.606	0.698	1e-94
242058649	405	hypothetical protein SORBIDRAFT_03g03427	0.932	0.612	0.675	3e-94
226491928	405	uncharacterized protein LOC100272291 [Ze	0.778	0.511	0.797	4e-94

>gi|255550960|ref|XP_002516528.1| tryptophanyl-tRNA synthetase, putative [Ricinus communis] gi|223544348|gb|EEF45869.1| tryptophanyl-tRNA synthetase, putative [Ricinus communis]

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 214/262 (81%), Positives = 229/262 (87%), Gaps = 7/262 (2%)

Query: 1   MGRALLSHFLIVSNSSPRLVSSLKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYC 60
           MGRALLS FL+ SNS   L S+    S  GL  +Y K+P LI QN      +   FRC+C
Sbjct: 1   MGRALLSQFLL-SNSPTCLAST--SLSLNGLRRQYLKSPRLISQN----ARHAAAFRCHC 53

Query: 61  NVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLH 120
           +VS ++P AP +SSS+VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN+YETLFFIVDLH
Sbjct: 54  SVSAAQPDAPASSSSAVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNTYETLFFIVDLH 113

Query: 121 AITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLN 180
           AITLPYDT QLSKATR TAAIYLACG+DNS+ASVFVQSHVRAHVELMWLLSSATPIGWLN
Sbjct: 114 AITLPYDTPQLSKATRNTAAIYLACGVDNSRASVFVQSHVRAHVELMWLLSSATPIGWLN 173

Query: 181 KMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERV 240
           +MIQFKEKS KAG ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERV
Sbjct: 174 RMIQFKEKSRKAGDENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERV 233

Query: 241 NYLYGGRKWKKLGGRGGAIFKV 262
           NYLYGGRKWKKLGGRGGAIFKV
Sbjct: 234 NYLYGGRKWKKLGGRGGAIFKV 255

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429361|ref|XP_002273029.1| PREDICTED: tryptophanyl-tRNA synthetase [Vitis vinifera] gi|296081565|emb|CBI20570.3| unnamed protein product [Vitis vinifera]

 Score =  422 bits (1085), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 207/262 (79%), Positives = 225/262 (85%), Gaps = 3/262 (1%)

Query: 1   MGRALLSHFLIVSNSSPRLVSSLKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYC 60
           MGR++LSHFL +SN SPR  SSL   S G +PSK  K  G I Q+  L      GFRC C
Sbjct: 1   MGRSVLSHFLNLSNPSPRFTSSL---SSGAIPSKLLKKSGSIDQHCLLNRQIRTGFRCCC 57

Query: 61  NVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLH 120
           ++S+S+P    +SSS ++KRIVSGVQPTG+IHLGNYLGAIKNWI LQN+Y+T FFIVDLH
Sbjct: 58  SISVSQPAGQESSSSPLRKRIVSGVQPTGTIHLGNYLGAIKNWIPLQNTYDTFFFIVDLH 117

Query: 121 AITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLN 180
           AITLPY+TQQL KATR+TAAIYLACG+D SKASVFVQSHVRAH ELMWLLSSATPIGWLN
Sbjct: 118 AITLPYETQQLFKATRDTAAIYLACGVDTSKASVFVQSHVRAHSELMWLLSSATPIGWLN 177

Query: 181 KMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERV 240
           KMIQFKEKS K G ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERV
Sbjct: 178 KMIQFKEKSRKVGDENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERV 237

Query: 241 NYLYGGRKWKKLGGRGGAIFKV 262
           NYLYGGRKWKKLGGRGGAIFKV
Sbjct: 238 NYLYGGRKWKKLGGRGGAIFKV 259

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436894|ref|XP_004136227.1| PREDICTED: tryptophan--tRNA ligase-like [Cucumis sativus]

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 205/263 (77%), Positives = 222/263 (84%), Gaps = 7/263 (2%)

Query: 1   MGRALLSHFLIVSNSSPRLVSSLKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYC 60
           MGRALLSHFL++S SS R   S    + G   +KY K   L   NR   +  G   RC C
Sbjct: 1   MGRALLSHFLVLSQSSTRFTPSPSLSAFG---TKYTKPHSLFPLNR---SSTGNSSRCCC 54

Query: 61  NVSLSEPTA-PVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDL 119
            +SL+EP A P    SS+K+RIVSGVQPTGSIHLGNYLGAIKNWI+LQ++Y+TLFFIVDL
Sbjct: 55  GISLTEPAAAPERPPSSIKRRIVSGVQPTGSIHLGNYLGAIKNWISLQDTYDTLFFIVDL 114

Query: 120 HAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWL 179
           HAITLPYDTQQL KATR+TAAIYLACG+D SKASVFVQSHVRAHVELMWLLSSATPIGWL
Sbjct: 115 HAITLPYDTQQLHKATRDTAAIYLACGVDTSKASVFVQSHVRAHVELMWLLSSATPIGWL 174

Query: 180 NKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAER 239
           N+MIQFKEKS KAG ENVGVALLTYPVLMASDILLYQSD+VPVGEDQKQHLELTRELAER
Sbjct: 175 NRMIQFKEKSRKAGDENVGVALLTYPVLMASDILLYQSDYVPVGEDQKQHLELTRELAER 234

Query: 240 VNYLYGGRKWKKLGGRGGAIFKV 262
           VNYLYGGRKWKKLGGRGG IFKV
Sbjct: 235 VNYLYGGRKWKKLGGRGGVIFKV 257

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224075399|ref|XP_002304617.1| predicted protein [Populus trichocarpa] gi|222842049|gb|EEE79596.1| predicted protein [Populus trichocarpa]

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/223 (86%), Positives = 204/223 (91%), Gaps = 6/223 (2%)

Query: 42  IRQNRNLATHNGCGFRCYCNVSLSEPTAPVASSSSV--KKRIVSGVQPTGSIHLGNYLGA 99
           IRQN   +     GFRCYC+VS S+ T+P  S +SV  KKRIVSGVQPTGS+HLGNYLGA
Sbjct: 28  IRQNSKYSN----GFRCYCDVSHSQQTSPENSPTSVTVKKRIVSGVQPTGSVHLGNYLGA 83

Query: 100 IKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSH 159
           IKNWIALQN+YETLFFIVDLHAITLPYDT++LSKATR+TAAIYLACGID SKASVFVQSH
Sbjct: 84  IKNWIALQNTYETLFFIVDLHAITLPYDTKELSKATRDTAAIYLACGIDASKASVFVQSH 143

Query: 160 VRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDF 219
           V AHVELMWLLSSATPIGWLN+MIQFKEKS KAG ENVGVALLTYPVLMASDILLYQSDF
Sbjct: 144 VHAHVELMWLLSSATPIGWLNRMIQFKEKSRKAGDENVGVALLTYPVLMASDILLYQSDF 203

Query: 220 VPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKV 262
           VPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKV
Sbjct: 204 VPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKV 246

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518366|ref|XP_003527850.1| PREDICTED: tryptophanyl-tRNA synthetase-like [Glycine max]

 Score =  366 bits (939), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 174/206 (84%), Positives = 185/206 (89%)

Query: 57  RCYCNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFI 116
           R  C  +L+  ++   + + VKKR+VSGVQPTGSIHLGNY GAIKNW+ALQN Y+TLFFI
Sbjct: 30  RIRCCTTLTATSSETPTPTFVKKRVVSGVQPTGSIHLGNYFGAIKNWVALQNVYDTLFFI 89

Query: 117 VDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPI 176
           VDLHAITLPYDTQQLSKATR TAAIYLACG+D SKASVFVQSHVRAHVELMWLLSS TPI
Sbjct: 90  VDLHAITLPYDTQQLSKATRSTAAIYLACGVDPSKASVFVQSHVRAHVELMWLLSSTTPI 149

Query: 177 GWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 236
           GWLNKMIQFKEKS KAG E VGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTR+L
Sbjct: 150 GWLNKMIQFKEKSRKAGDEEVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRDL 209

Query: 237 AERVNYLYGGRKWKKLGGRGGAIFKV 262
           AERVN LYGGRKWKKLGGRGG IFKV
Sbjct: 210 AERVNNLYGGRKWKKLGGRGGTIFKV 235

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510049|ref|XP_003523753.1| PREDICTED: tryptophanyl-tRNA synthetase-like [Glycine max]

 Score =  360 bits (923), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 171/186 (91%), Positives = 176/186 (94%)

Query: 77  VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATR 136
           VKKR+VSGVQPTGSIHLGNY GAIKNW+ALQN Y+TLFFIVDLHAITLPYDTQQLSKATR
Sbjct: 50  VKKRVVSGVQPTGSIHLGNYFGAIKNWVALQNVYDTLFFIVDLHAITLPYDTQQLSKATR 109

Query: 137 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGEN 196
            TAAIYLACG+D SKASVFVQSHVRAHVELMWLLSS TPIGWLNKMIQFKEKS KAG E 
Sbjct: 110 STAAIYLACGVDPSKASVFVQSHVRAHVELMWLLSSTTPIGWLNKMIQFKEKSRKAGDEE 169

Query: 197 VGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRG 256
           VGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTR+LAERVN LYGGRKWKKLGGRG
Sbjct: 170 VGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRDLAERVNNLYGGRKWKKLGGRG 229

Query: 257 GAIFKV 262
           G IFKV
Sbjct: 230 GTIFKV 235

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|57899972|dbj|BAD87908.1| putative tryptophanyl-tRNA synthetase [Oryza sativa Japonica Group] gi|125527667|gb|EAY75781.1| hypothetical protein OsI_03697 [Oryza sativa Indica Group] gi|125571983|gb|EAZ13498.1| hypothetical protein OsJ_03415 [Oryza sativa Japonica Group]

 Score =  355 bits (911), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 183/262 (69%), Positives = 204/262 (77%), Gaps = 20/262 (7%)

Query: 1   MGRALLSHFLIVSNSSPRLVSSLKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYC 60
           M R LLSH L   +  P L++S      G LPS+       +R N ++A     G     
Sbjct: 1   MSRTLLSHIL---HRPPPLLASRGGGRGGALPSRLRT----LRLNCSVAEATASG----- 48

Query: 61  NVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLH 120
                E  AP A     KKR+VSGVQPTG +HLGNYLGAIKNW++LQ+ YETLFFIVDLH
Sbjct: 49  ----DEAPAPPAR----KKRVVSGVQPTGLVHLGNYLGAIKNWVSLQDLYETLFFIVDLH 100

Query: 121 AITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLN 180
           AITLPY+  QLSKATR TAAIYLACGID+SKAS+FVQSHVRAHVELMWLLSS+TPIGWLN
Sbjct: 101 AITLPYEAPQLSKATRSTAAIYLACGIDSSKASIFVQSHVRAHVELMWLLSSSTPIGWLN 160

Query: 181 KMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERV 240
           +MIQFKEKS KAG ENVGVALLTYPVLMASDILLYQSD VPVGEDQ QHLELTRE+AERV
Sbjct: 161 RMIQFKEKSRKAGDENVGVALLTYPVLMASDILLYQSDLVPVGEDQTQHLELTREIAERV 220

Query: 241 NYLYGGRKWKKLGGRGGAIFKV 262
           N LYGGRKWKK+GGRGG++FKV
Sbjct: 221 NNLYGGRKWKKMGGRGGSLFKV 242

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357136379|ref|XP_003569782.1| PREDICTED: tryptophanyl-tRNA synthetase-like isoform 2 [Brachypodium distachyon]

 Score =  352 bits (902), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 183/262 (69%), Positives = 201/262 (76%), Gaps = 20/262 (7%)

Query: 1   MGRALLSHFLIVSNSSPRLVSSLKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYC 60
           M RALLSH L   +  P L S    R  G L S+       +R N + A           
Sbjct: 1   MSRALLSHLL---HRPPLLSSRSGIRGVGALHSRLRT----LRLNCSAAE---------A 44

Query: 61  NVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLH 120
             S  E  AP A     KKR+VSGVQPTG +HLGNYLGAIKNW+ALQ+ YET FFIVDLH
Sbjct: 45  TASADETPAPPAR----KKRVVSGVQPTGLVHLGNYLGAIKNWVALQDLYETFFFIVDLH 100

Query: 121 AITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLN 180
           AITLPY+  QLSK+TR TAAIYLACGID+SKAS+FVQSHVRAH+ELMWLLSS+TPIGWLN
Sbjct: 101 AITLPYEAPQLSKSTRSTAAIYLACGIDSSKASIFVQSHVRAHIELMWLLSSSTPIGWLN 160

Query: 181 KMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERV 240
           KMIQFKEKS KAG ENVGVALLTYPVLMASDILLYQSD VPVGEDQ QHLELTRE+AERV
Sbjct: 161 KMIQFKEKSRKAGDENVGVALLTYPVLMASDILLYQSDLVPVGEDQTQHLELTREIAERV 220

Query: 241 NYLYGGRKWKKLGGRGGAIFKV 262
           N LYGGRKWKK+GGRGG++FKV
Sbjct: 221 NNLYGGRKWKKMGGRGGSLFKV 242

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242058649|ref|XP_002458470.1| hypothetical protein SORBIDRAFT_03g034270 [Sorghum bicolor] gi|241930445|gb|EES03590.1| hypothetical protein SORBIDRAFT_03g034270 [Sorghum bicolor]

 Score =  350 bits (898), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 177/262 (67%), Positives = 200/262 (76%), Gaps = 14/262 (5%)

Query: 1   MGRALLSHFLIVSNSSPRLVSSLKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYC 60
           M RALLSH L   +  P    +  C  R G+ ++     G+    R           C  
Sbjct: 1   MSRALLSHVL---HRPPHFAYT--CLRRSGVGARGVLASGIHPLRR---------LNCSA 46

Query: 61  NVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLH 120
             ++  PT   ++  + KKR+VSGVQPTG +HLGNYLGAIKNW+ALQ+ YET FFIVDLH
Sbjct: 47  VEAVPGPTEEASAPPARKKRVVSGVQPTGLVHLGNYLGAIKNWVALQDLYETFFFIVDLH 106

Query: 121 AITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLN 180
           AITLPY+   LSKATR TAAIYLACG+D+SKAS+FVQSHVRAHVELMWLLSS+TPIGWLN
Sbjct: 107 AITLPYEAPLLSKATRSTAAIYLACGVDSSKASIFVQSHVRAHVELMWLLSSSTPIGWLN 166

Query: 181 KMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERV 240
           +MIQFKEKS KAG ENVGVALLTYPVLMASDILLYQSD VPVGEDQ QHLELTRE+AERV
Sbjct: 167 RMIQFKEKSRKAGDENVGVALLTYPVLMASDILLYQSDLVPVGEDQTQHLELTREIAERV 226

Query: 241 NYLYGGRKWKKLGGRGGAIFKV 262
           N LYGGRKWKKLGGRGG +FKV
Sbjct: 227 NNLYGGRKWKKLGGRGGLLFKV 248

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226491928|ref|NP_001140250.1| uncharacterized protein LOC100272291 [Zea mays] gi|194698694|gb|ACF83431.1| unknown [Zea mays] gi|414880562|tpg|DAA57693.1| TPA: hypothetical protein ZEAMMB73_474699 [Zea mays]

 Score =  350 bits (898), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 165/207 (79%), Positives = 181/207 (87%)

Query: 56  FRCYCNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFF 115
             C    ++  PT    +  + KKR+VSGVQPTGS+HLGNYLGAIKNW+ALQ+SYET FF
Sbjct: 42  LNCSAVEAVPGPTEEAPAPQARKKRVVSGVQPTGSVHLGNYLGAIKNWVALQDSYETFFF 101

Query: 116 IVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATP 175
           IVDLHAITLPY+   LSKATR TAAIYLACG+D+SKAS+FVQSHVRAHVELMWLLSS+TP
Sbjct: 102 IVDLHAITLPYEAPLLSKATRSTAAIYLACGVDSSKASIFVQSHVRAHVELMWLLSSSTP 161

Query: 176 IGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRE 235
           IGWLN+MIQFKEKS KAG ENVGVALLTYPVLMASDILLYQSD VPVGEDQ QHLELTRE
Sbjct: 162 IGWLNRMIQFKEKSRKAGDENVGVALLTYPVLMASDILLYQSDLVPVGEDQTQHLELTRE 221

Query: 236 LAERVNYLYGGRKWKKLGGRGGAIFKV 262
           +AERVN LYGGRKWKKLGGRGG +FKV
Sbjct: 222 IAERVNNLYGGRKWKKLGGRGGLLFKV 248

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	266
TAIR|locus:2043570	412	OVA4 "ovule abortion 4" [Arabi	0.849	0.548	0.661	2.1e-75
UNIPROTKB|P00954	334	trpS "tryptophanyl-tRNA synthe	0.612	0.488	0.536	4.4e-45
TIGR_CMR|SO_0294	332	SO_0294 "tryptophanyl-tRNA syn	0.612	0.490	0.524	1.9e-44
UNIPROTKB|P67590	336	trpS "Tryptophan--tRNA ligase"	0.635	0.502	0.523	8.1e-44
TIGR_CMR|BA_1188	329	BA_1188 "tryptophanyl-tRNA syn	0.597	0.483	0.559	8.1e-44
TIGR_CMR|ECH_0167	333	ECH_0167 "tryptophanyl-tRNA sy	0.597	0.477	0.539	1.3e-43
TIGR_CMR|CPS_0480	335	CPS_0480 "tryptophanyl-tRNA sy	0.612	0.486	0.506	1.9e-42
TIGR_CMR|APH_0035	331	APH_0035 "tryptophanyl-tRNA sy	0.601	0.483	0.533	8.4e-42
UNIPROTKB|Q9KNV7	338	trpS "Tryptophan--tRNA ligase"	0.612	0.482	0.506	8.7e-40
TIGR_CMR|VC_2623	338	VC_2623 "tryptophanyl-tRNA syn	0.612	0.482	0.506	8.7e-40

TAIR|locus:2043570 OVA4 "ovule abortion 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 760 (272.6 bits), Expect = 2.1e-75, P = 2.1e-75
 Identities = 160/242 (66%), Positives = 186/242 (76%)

Query:     1 MGRAL-LSHFLIVSNSSPRLVSSLKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCY 59
             MG A  LSHFLI+S+S  R        SR G  ++    P  +  + +  +  G GFRC 
Sbjct:     1 MGHATSLSHFLILSSS--RF-------SRLGSLTRLLSKPTSLSGSFSSISVTGQGFRCC 51

Query:    60 CNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDL 119
             C+V+ ++ T+P     SVKKR+VSGVQPTGS+HLGNYLGAIKNW+ALQ++YETLF IVD 
Sbjct:    52 CSVA-TDDTSP-----SVKKRVVSGVQPTGSVHLGNYLGAIKNWVALQDTYETLFIIVDH 105

Query:   120 HAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWL 179
             HAITLPYDT+QL KAT +TAA+YLACGID SKASVFVQSHV AHVELMWLL S+TPIGWL
Sbjct:   106 HAITLPYDTRQLGKATTDTAALYLACGIDVSKASVFVQSHVPAHVELMWLLCSSTPIGWL 165

Query:   180 NKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAER 239
              KMIQFKEKS K G EN  V L TYP LM +DILLYQSDFVPVGEDQKQH+EL RE+A+R
Sbjct:   166 QKMIQFKEKSRKEGVENASVGLFTYPDLMTADILLYQSDFVPVGEDQKQHIELAREIAQR 225

Query:   240 VN 241
             VN
Sbjct:   226 VN 227

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA;ISS

GO:0004830 "tryptophan-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA;ISS

GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0048481 "ovule development" evidence=RCA;IMP

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009658 "chloroplast organization" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

UNIPROTKB|P00954 trpS "tryptophanyl-tRNA synthetase" [Escherichia coli K-12 (taxid:83333)]

 Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
 Identities = 88/164 (53%), Positives = 121/164 (73%)

Query:    78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
             K  + SG QP+G + +GNY+GA++ W+ +Q+ Y  ++ IVD HAIT+  D Q+L KAT +
Sbjct:     3 KPIVFSGAQPSGELTIGNYMGALRQWVNMQDDYHCIYCIVDQHAITVRQDAQKLRKATLD 62

Query:   138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 197
             T A+YLACGID  K+++FVQSHV  H +L W L+  T  G L++M QFK+KS +   EN+
Sbjct:    63 TLALYLACGIDPEKSTIFVQSHVPEHAQLGWALNCYTYFGELSRMTQFKDKSARYA-ENI 121

Query:   198 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVN 241
                L  YPVLMA+DILLYQ++ VPVGEDQKQHLEL+R++A+R N
Sbjct:   122 NAGLFDYPVLMAADILLYQTNLVPVGEDQKQHLELSRDIAQRFN 165

GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=IEA

GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004830 "tryptophan-tRNA ligase activity" evidence=IEA

TIGR_CMR|SO_0294 SO_0294 "tryptophanyl-tRNA synthetase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 86/164 (52%), Positives = 123/164 (75%)

Query:    78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
             K  ++SG QP+G + +GNY+GA++ W+A+Q+S++ L+ +VDLHAIT+  D Q L +A  +
Sbjct:     3 KPIVLSGAQPSGELTIGNYMGALRQWVAMQDSHDCLYCVVDLHAITVRQDPQALREACLD 62

Query:   138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 197
             T A+YLACG+D  K++VF+QS V  H +L W L+  T +G L++M QFK+KS K    N+
Sbjct:    63 TLALYLACGVDPKKSTVFIQSQVPQHTQLGWALNCYTQMGELSRMTQFKDKSQKHAN-NI 121

Query:   198 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVN 241
              V L  YPVLMA+DILLYQ++ +PVG+DQKQHLELTR++A R N
Sbjct:   122 NVGLFGYPVLMAADILLYQANEIPVGQDQKQHLELTRDIATRFN 165

GO:0004830 "tryptophan-tRNA ligase activity" evidence=ISS

GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=ISS

UNIPROTKB|P67590 trpS "Tryptophan--tRNA ligase" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
 Identities = 89/170 (52%), Positives = 119/170 (70%)

Query:    73 SSSSVKKRIVSGVQPTG-SIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQL 131
             S+ +  +RI SGVQPT  S+HLGN LGA+  W+ LQ+ ++  F +VDLHAIT+P D + L
Sbjct:     2 STPTGSRRIFSGVQPTSDSLHLGNALGAVAQWVGLQDDHDAFFCVVDLHAITIPQDPEAL 61

Query:   132 SKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHK 191
              + T  TAA YLA GID  +A++FVQS V AH +L W+L   T  G  ++M QFK+KS +
Sbjct:    62 RRRTLITAAQYLALGIDPGRATIFVQSQVPAHTQLAWVLGCFTGFGQASRMTQFKDKSAR 121

Query:   192 AGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVN 241
              G E   V L TYPVL A+D+L Y ++ VPVGEDQ+QHLEL R++A+R N
Sbjct:   122 QGSEATTVGLFTYPVLQAADVLAYDTELVPVGEDQRQHLELARDVAQRFN 171

GO:0005886 "plasma membrane" evidence=IDA

GO:0040007 "growth" evidence=IMP

TIGR_CMR|BA_1188 BA_1188 "tryptophanyl-tRNA synthetase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
 Identities = 90/161 (55%), Positives = 120/161 (74%)

Query:    81 IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAA 140
             I SG+QP+G+I LGNYLGA+K +  LQN ++  F IV+ HAIT+P D  QL K  R  AA
Sbjct:     4 IFSGIQPSGTITLGNYLGAMKQFTELQNEHDCYFCIVNQHAITVPQDPVQLRKNIRSLAA 63

Query:   141 IYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVA 200
             +Y+ACGID  KA++FVQS V AH +L W++ S   +G L +M Q+K+K+  +G ++V   
Sbjct:    64 LYVACGIDPEKATLFVQSEVPAHAQLGWIMQSVAYVGELERMTQYKDKA--SGRDSVPAG 121

Query:   201 LLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVN 241
             LLTYP LMA+DILLY ++ VPVG+DQKQH+ELTR+LAER N
Sbjct:   122 LLTYPPLMAADILLYNTEIVPVGDDQKQHMELTRDLAERFN 162

GO:0004830 "tryptophan-tRNA ligase activity" evidence=ISS

GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=ISS

TIGR_CMR|ECH_0167 ECH_0167 "tryptophanyl-tRNA synthetase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
 Identities = 88/163 (53%), Positives = 122/163 (74%)

Query:    81 IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLP-YDTQQLSKATRETA 139
             ++SG+QP+G IHLGNYLG+I+NW++LQ+SY+  FF+ DLH +T   Y++ +L + +  T 
Sbjct:     6 VLSGIQPSGGIHLGNYLGSIRNWVSLQSSYKCFFFLADLHTLTSNNYNSAELKQNSINTL 65

Query:   140 AIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKS-HKAGGENVG 198
             A YLACGID +K+ +FVQS + AH EL+W+ S  T  G LN+M QFKEKS +K     +G
Sbjct:    66 ATYLACGIDPNKSVLFVQSSIHAHAELLWIFSCITSTGQLNRMTQFKEKSRNKVSTACLG 125

Query:   199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVN 241
               L +YPVLMA+DIL+Y+++ VPVG DQKQHLELTR++A   N
Sbjct:   126 --LYSYPVLMAADILIYKANIVPVGIDQKQHLELTRDIAMNFN 166

GO:0004830 "tryptophan-tRNA ligase activity" evidence=ISS

GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=ISS

TIGR_CMR|CPS_0480 CPS_0480 "tryptophanyl-tRNA synthetase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 83/164 (50%), Positives = 119/164 (72%)

Query:    78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
             K  ++SG QP+G + +GNYLGA+K W+ +Q+++E  + +VD HAIT+      L  AT +
Sbjct:     4 KPIVLSGCQPSGELTIGNYLGALKQWVNMQSTHECYYMLVDQHAITVRPKAADLRNATLD 63

Query:   138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 197
               A+YLACG+D  ++++F+QSHV AH +L W+L+  T +G LN+M Q+K+KS K+   N+
Sbjct:    64 GLALYLACGVDPEQSTIFIQSHVPAHAQLSWVLNCYTQMGELNRMTQYKDKSQKSEA-NM 122

Query:   198 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVN 241
                L TYPVLMA+DILLY +D VPVG+DQKQHLEL R++A R N
Sbjct:   123 NSGLFTYPVLMAADILLYGADRVPVGDDQKQHLELARDIATRFN 166

GO:0004830 "tryptophan-tRNA ligase activity" evidence=ISS

GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=ISS

TIGR_CMR|APH_0035 APH_0035 "tryptophanyl-tRNA synthetase" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
 Identities = 87/163 (53%), Positives = 115/163 (70%)

Query:    81 IVSGVQPTG-SIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PYDTQQLSKATRET 138
             I S VQP+G S+HLGNYLGA+K W+ALQ++ + +F IVD+HA+T    +T  +   T   
Sbjct:     2 IFSAVQPSGGSLHLGNYLGAVKKWVALQDAGKCVFCIVDMHALTSGSAETLSIRANTLSL 61

Query:   139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
              A Y+ACGID +KA VF+QS V  H EL W+L   TP+GWLN+M QFK+KS ++      
Sbjct:    62 LASYIACGIDPAKAVVFLQSSVPEHAELCWILGCLTPVGWLNRMTQFKDKS-RSDSYRAN 120

Query:   199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVN 241
             + L +YPVLMA+DILLY++D VPVG DQKQHLEL + +A   N
Sbjct:   121 LGLYSYPVLMAADILLYKADLVPVGNDQKQHLELAQSIARTFN 163

GO:0004830 "tryptophan-tRNA ligase activity" evidence=ISS

GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=ISS

UNIPROTKB|Q9KNV7 trpS "Tryptophan--tRNA ligase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 83/164 (50%), Positives = 115/164 (70%)

Query:    78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
             K  ++SGVQP+G + +GNYLGA++ W  +Q+ Y+  + +VDLHAIT+  D Q L +AT +
Sbjct:     3 KPIVLSGVQPSGELSIGNYLGALRQWQQMQDDYDCQYCVVDLHAITVRQDPQALHEATLD 62

Query:   138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 197
               AI LA G+D  K+++FVQSHV  H +L W+L+  T +G L++M QFK+KS +   + V
Sbjct:    63 ALAICLAVGVDPKKSTLFVQSHVPEHAQLGWVLNCYTQMGELSRMTQFKDKSARYAND-V 121

Query:   198 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVN 241
                L  YPVLMA+DILLY +  VPVG DQKQHLEL R++A R N
Sbjct:   122 NAGLFGYPVLMAADILLYGAHQVPVGSDQKQHLELARDIATRFN 165

GO:0004830 "tryptophan-tRNA ligase activity" evidence=ISS

GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=ISS

TIGR_CMR|VC_2623 VC_2623 "tryptophanyl-tRNA synthetase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 83/164 (50%), Positives = 115/164 (70%)

Query:    78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
             K  ++SGVQP+G + +GNYLGA++ W  +Q+ Y+  + +VDLHAIT+  D Q L +AT +
Sbjct:     3 KPIVLSGVQPSGELSIGNYLGALRQWQQMQDDYDCQYCVVDLHAITVRQDPQALHEATLD 62

Query:   138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 197
               AI LA G+D  K+++FVQSHV  H +L W+L+  T +G L++M QFK+KS +   + V
Sbjct:    63 ALAICLAVGVDPKKSTLFVQSHVPEHAQLGWVLNCYTQMGELSRMTQFKDKSARYAND-V 121

Query:   198 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVN 241
                L  YPVLMA+DILLY +  VPVG DQKQHLEL R++A R N
Sbjct:   122 NAGLFGYPVLMAADILLYGAHQVPVGSDQKQHLELARDIATRFN 165

GO:0004830 "tryptophan-tRNA ligase activity" evidence=ISS

GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	6.1.1.2	LOW CONFIDENCE prediction!
3rd Layer	6.1.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	266
PLN02886	389	PLN02886, PLN02886, aminoacyl-tRNA ligase	1e-151
PRK00927	333	PRK00927, PRK00927, tryptophanyl-tRNA synthetase;	1e-115
COG0180	314	COG0180, TrpS, Tryptophanyl-tRNA synthetase [Trans	2e-88
cd00806	280	cd00806, TrpRS_core, catalytic core domain of tryp	1e-84
TIGR00233	327	TIGR00233, trpS, tryptophanyl-tRNA synthetase	9e-76
PRK12283	398	PRK12283, PRK12283, tryptophanyl-tRNA synthetase;	1e-65
pfam00579	291	pfam00579, tRNA-synt_1b, tRNA synthetases class I	3e-63
PRK12282	333	PRK12282, PRK12282, tryptophanyl-tRNA synthetase I	6e-59
PRK12556	332	PRK12556, PRK12556, tryptophanyl-tRNA synthetase;	4e-51
PRK12284	431	PRK12284, PRK12284, tryptophanyl-tRNA synthetase;	1e-42
cd00395	273	cd00395, Tyr_Trp_RS_core, catalytic core domain of	4e-28
PRK12285	368	PRK12285, PRK12285, tryptophanyl-tRNA synthetase;	5e-09
cd00802	143	cd00802, class_I_aaRS_core, catalytic core domain	4e-05
TIGR00234	377	TIGR00234, tyrS, tyrosyl-tRNA synthetase	8e-04
PRK08560	329	PRK08560, PRK08560, tyrosyl-tRNA synthetase; Valid	0.001

>gnl|CDD|215478 PLN02886, PLN02886, aminoacyl-tRNA ligase

 Score =  426 bits (1096), Expect = e-151
 Identities = 164/236 (69%), Positives = 185/236 (78%), Gaps = 6/236 (2%)

Query: 27  SRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYCNVSLSEPTAPVASSSSVKKRIVSGVQ 86
           S  G   +    PG +  +   A+   C   C    + + P        + KKR+VSGVQ
Sbjct: 1   SSLGSLGRLLSKPGPLSGS---ASSASC---CSAATAATAPEKEAPPKVARKKRVVSGVQ 54

Query: 87  PTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACG 146
           PTGSIHLGNYLGAIKNW+ALQ +Y+T F +VDLHAITLP+D ++L KATR TAAIYLACG
Sbjct: 55  PTGSIHLGNYLGAIKNWVALQETYDTFFCVVDLHAITLPHDPRELGKATRSTAAIYLACG 114

Query: 147 IDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPV 206
           ID SKASVFVQSHV AH ELMWLLS +TPIGWLNKMIQFKEKS KAG ENVGV LLTYPV
Sbjct: 115 IDPSKASVFVQSHVPAHAELMWLLSCSTPIGWLNKMIQFKEKSRKAGDENVGVGLLTYPV 174

Query: 207 LMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKV 262
           LMASDILLYQ+D VPVGEDQKQHLELTR++AERVN LYGGRKWKKLGGRGG++FKV
Sbjct: 175 LMASDILLYQADLVPVGEDQKQHLELTRDIAERVNNLYGGRKWKKLGGRGGSVFKV 230

Length = 389

>gnl|CDD|234866 PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed

 Score =  334 bits (859), Expect = e-115
 Identities = 108/168 (64%), Positives = 132/168 (78%), Gaps = 1/168 (0%)

Query: 78  KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
           KKR++SG+QPTG +HLGNYLGAIKNW+ LQ+ YE  F I DLHA+T+P D ++L + TRE
Sbjct: 1   KKRVLSGIQPTGKLHLGNYLGAIKNWVELQDEYECFFCIADLHALTVPQDPEELRENTRE 60

Query: 138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 197
            AA YLACGID  K+++FVQSHV  H EL W+L+  TP+G L +M QFK+KS K   ENV
Sbjct: 61  LAADYLACGIDPEKSTIFVQSHVPEHAELAWILNCITPLGELERMTQFKDKSAK-QKENV 119

Query: 198 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYG 245
              L TYPVLMA+DILLY++D VPVGEDQKQHLELTR++A R N LYG
Sbjct: 120 SAGLFTYPVLMAADILLYKADLVPVGEDQKQHLELTRDIARRFNNLYG 167

Length = 333

>gnl|CDD|223258 COG0180, TrpS, Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

 Score =  265 bits (679), Expect = 2e-88
 Identities = 102/171 (59%), Positives = 127/171 (74%), Gaps = 4/171 (2%)

Query: 78  KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSY-ETLFFIVDLHAITLPYDT--QQLSKA 134
           K R++SG+QP+G +HLGNYLGAI+NW+ LQ  Y E  FFI DLHAIT+  D   + L +A
Sbjct: 5   KFRVLSGIQPSGKLHLGNYLGAIRNWVLLQEEYYECFFFIADLHAITVRQDPTEEDLRQA 64

Query: 135 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 194
           TRE AA YLA G+D  K+++F+QS V  H EL WLLS  T  G L +M QFK+KS K G 
Sbjct: 65  TREVAADYLAVGLDPEKSTIFLQSEVPEHAELAWLLSCVTNFGELERMTQFKDKSAKKG- 123

Query: 195 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYG 245
           E++ + LLTYPVL A+DILLYQ+  VPVGEDQ QHLELTR++A R N+LYG
Sbjct: 124 ESIPIGLLTYPVLQAADILLYQATLVPVGEDQDQHLELTRDIARRFNHLYG 174

Length = 314

>gnl|CDD|173903 cd00806, TrpRS_core, catalytic core domain of tryptophanyl-tRNA synthetase

 Score =  254 bits (650), Expect = 1e-84
 Identities = 93/168 (55%), Positives = 120/168 (71%), Gaps = 4/168 (2%)

Query: 80  RIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPY-DTQQLSKATRE 137
           R++SG+QP+GS+HLG+YLGA + W+ LQ + YE  FFI DLHA+T+   D ++L + TRE
Sbjct: 1   RVLSGIQPSGSLHLGHYLGAFRFWVWLQEAGYELFFFIADLHALTVKQLDPEELRQNTRE 60

Query: 138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 197
            A  YLACG+D  K+++F QS V  H EL WLLS     G L +M  FK+KS  A GE+V
Sbjct: 61  NAKDYLACGLDPEKSTIFFQSDVPEHYELAWLLSCVVTFGELERMTGFKDKS--AQGESV 118

Query: 198 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYG 245
            + LLTYPVL A+DILLY++  VPVG DQ  HLELTR++A R N LYG
Sbjct: 119 NIGLLTYPVLQAADILLYKACLVPVGIDQDPHLELTRDIARRFNKLYG 166

Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding. Length = 280

>gnl|CDD|232888 TIGR00233, trpS, tryptophanyl-tRNA synthetase

 Score =  232 bits (595), Expect = 9e-76
 Identities = 89/169 (52%), Positives = 109/169 (64%), Gaps = 4/169 (2%)

Query: 78  KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLP-YDTQQLSKATR 136
           K R+++G+QP+G +HLG+YLGAI+     Q   E    I DLHAIT+   D   L KA  
Sbjct: 2   KFRVLTGIQPSGKMHLGHYLGAIQTKWLQQFGVELFICIADLHAITVKQTDPDALRKARE 61

Query: 137 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGEN 196
           E AA YLA G+D  K  +F+QS    H EL WLLS     G L +M QFK+KS     EN
Sbjct: 62  ELAADYLAVGLDPEKTFIFLQSDYPEHYELAWLLSCQVTFGELKRMTQFKDKSQA---EN 118

Query: 197 VGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYG 245
           V + LL+YPVL A+DILLYQ+D VPVG DQ QHLELTR+LAER N  + 
Sbjct: 119 VPIGLLSYPVLQAADILLYQADLVPVGIDQDQHLELTRDLAERFNKKFK 167

This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model [Protein synthesis, tRNA aminoacylation]. Length = 327

>gnl|CDD|183401 PRK12283, PRK12283, tryptophanyl-tRNA synthetase; Reviewed

 Score =  209 bits (534), Expect = 1e-65
 Identities = 79/193 (40%), Positives = 123/193 (63%), Gaps = 11/193 (5%)

Query: 79  KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDT-QQLSKATRE 137
            R++SG++PTG +HLG+Y G +KNW+ LQ+ YE  FF+ D HA+T  Y+T + + K   +
Sbjct: 3   DRVLSGMRPTGRLHLGHYHGVLKNWVKLQHEYECFFFVADWHALTTHYETPEVIEKNVWD 62

Query: 138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 197
               +LA G+D ++A++F+QS V  H EL  LLS  TP+GWL ++  +K++  K   +++
Sbjct: 63  MVIDWLAAGVDPAQATLFIQSKVPEHAELHLLLSMITPLGWLERVPTYKDQQEKLKEKDL 122

Query: 198 GV-ALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRK-------- 248
                L YP+L ++DIL+Y++  VPVGEDQ  H+E+TRE+A R N+LYG           
Sbjct: 123 STYGFLGYPLLQSADILIYRAGLVPVGEDQVPHVEMTREIARRFNHLYGREPGFEEKAEA 182

Query: 249 -WKKLGGRGGAIF 260
             KKLG +   ++
Sbjct: 183 AIKKLGKKRAKLY 195

Length = 398

>gnl|CDD|216003 pfam00579, tRNA-synt_1b, tRNA synthetases class I (W and Y)

 Score =  199 bits (509), Expect = 3e-63
 Identities = 60/172 (34%), Positives = 85/172 (49%), Gaps = 8/172 (4%)

Query: 80  RIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYD---TQQLSKAT 135
           R+ +G  PTG +HLG YL  +   +  Q + +E  F I DL AI         ++L    
Sbjct: 7   RVYTGFDPTGPLHLG-YLVPLMKLVQFQQAGHEVFFLIGDLTAIIGDPSKSEERKLLSRE 65

Query: 136 RETAAI--YLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG 193
                    LACG+D  K+ +   S    H+EL WLL        LN+M+QFK+   +  
Sbjct: 66  EVLENAKAQLACGLDPEKSEIVNNSDWLEHLELAWLLRDLGNHFSLNRMLQFKDVKKRLK 125

Query: 194 -GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLY 244
               + +   TYP+L A+DILL ++D  P G DQ  H+EL R+LA R N   
Sbjct: 126 QNPGISLGEFTYPLLQAADILLLKADLQPGGSDQWGHIELGRDLARRFNKKV 177

Length = 291

>gnl|CDD|183400 PRK12282, PRK12282, tryptophanyl-tRNA synthetase II; Reviewed

 Score =  190 bits (484), Expect = 6e-59
 Identities = 63/170 (37%), Positives = 99/170 (58%), Gaps = 2/170 (1%)

Query: 78  KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PYDTQQLSKATR 136
           K  I++G +PTG +HLG+Y+G++KN +ALQN +E    I D  A+T    + +++ +   
Sbjct: 2   KPIILTGDRPTGKLHLGHYVGSLKNRVALQNEHEQFVLIADQQALTDNAKNPEKIRRNIL 61

Query: 137 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEK-SHKAGGE 195
           E A  YLA GID +K+++F+QS +    EL     +   +  L +    K + + K  G 
Sbjct: 62  EVALDYLAVGIDPAKSTIFIQSQIPELAELTMYYMNLVTVARLERNPTVKTEIAQKGFGR 121

Query: 196 NVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYG 245
           ++    LTYPV  A+DI  +++  VPVG+DQ   +E TRE+  R N LYG
Sbjct: 122 SIPAGFLTYPVSQAADITAFKATLVPVGDDQLPMIEQTREIVRRFNSLYG 171

Length = 333

>gnl|CDD|183592 PRK12556, PRK12556, tryptophanyl-tRNA synthetase; Provisional

 Score =  169 bits (431), Expect = 4e-51
 Identities = 75/178 (42%), Positives = 113/178 (63%), Gaps = 12/178 (6%)

Query: 78  KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYE--TLFFIVDLHAITLPYDTQQLSKAT 135
           +K +++G++PTG  HLGNY+GAIK  + +  +YE   L+FI D HA+   +D +Q    T
Sbjct: 3   EKIMLTGIKPTGYPHLGNYIGAIKPALQMAKNYEGKALYFIADYHALNAVHDPEQFRSYT 62

Query: 136 RETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFK---EKSHKA 192
           RE AA +L+ G+D      + QS V    EL W+LS  TP G +N+   +K   +++ +A
Sbjct: 63  REVAATWLSLGLDPEDVIFYRQSDVPEIFELAWILSCLTPKGLMNRAHAYKAKVDQNKEA 122

Query: 193 G-----GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYG 245
           G     G N+G  L TYP+LMA+DILL+Q+  VPVG+DQ QH+E+ R++A   N+ +G
Sbjct: 123 GLDLDAGVNMG--LYTYPILMAADILLFQATHVPVGKDQIQHIEIARDIATYFNHTFG 178

Length = 332

>gnl|CDD|237036 PRK12284, PRK12284, tryptophanyl-tRNA synthetase; Reviewed

 Score =  150 bits (380), Expect = 1e-42
 Identities = 71/175 (40%), Positives = 107/175 (61%), Gaps = 8/175 (4%)

Query: 80  RIVSGVQPTGSIHLGNYLGAIKNWIA--LQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
           R+++G+  TG+ HLGNY GAI+  IA   Q   E+ +F+ D HA+    D  ++ ++T E
Sbjct: 4   RVLTGITTTGTPHLGNYAGAIRPAIAASRQPGVESFYFLADYHALIKCDDPARIQRSTLE 63

Query: 138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFK---EKSHKAGG 194
            AA +LA G+D  + + + QS +    EL WLL+     G LN+   +K   +K+  AG 
Sbjct: 64  IAATWLAAGLDPERVTFYRQSDIPEIPELTWLLTCVAGKGLLNRAHAYKAAVDKNVAAGE 123

Query: 195 E---NVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGG 246
           +    V   L  YPVLMA+DIL++ +  VPVG DQ QH+E+ R++A+R N+LYGG
Sbjct: 124 DPDAGVTAGLFMYPVLMAADILMFNAHKVPVGRDQIQHIEMARDIAQRFNHLYGG 178

Length = 431

>gnl|CDD|173893 cd00395, Tyr_Trp_RS_core, catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase

 Score =  108 bits (270), Expect = 4e-28
 Identities = 48/182 (26%), Positives = 82/182 (45%), Gaps = 26/182 (14%)

Query: 81  IVSGVQPTG-SIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAIT----------LPYDT 128
           +  G+ PT  S+H+G+ +G +  +   Q++ +  +F I     I              D 
Sbjct: 2   LYCGIDPTADSLHIGHLIG-LLTFRRFQHAGHRPIFLIGGQTGIIGDPSGKKSERTLNDP 60

Query: 129 QQLSKATRETAAIYLACGIDNS--KASVFVQSHV---RAHVELMWLLSSATPIGWLNKMI 183
           +++ +  R  AA YLA GI     +A++F  S      AH++ +  L     + ++ +  
Sbjct: 61  EEVRQNIRRIAAQYLAVGIFEDPTQATLFNNSDWPGPLAHIQFLRDLGKHVYVNYMERKT 120

Query: 184 QFKEKSHKAGGENVGVALLTYPVLMASDILLYQS----DFVPVGEDQKQHLELTRELAER 239
            F+ +S +     +     TYP L A+D LL  +    D  P G DQ  ++ L RELA R
Sbjct: 121 SFQSRSEEG----ISATEFTYPPLQAADFLLLNTTEGCDIQPGGSDQWGNITLGRELARR 176

Query: 240 VN 241
            N
Sbjct: 177 FN 178

Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding. Length = 273

>gnl|CDD|237037 PRK12285, PRK12285, tryptophanyl-tRNA synthetase; Reviewed

 Score = 55.6 bits (135), Expect = 5e-09
 Identities = 48/181 (26%), Positives = 74/181 (40%), Gaps = 27/181 (14%)

Query: 81  IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFF-IVDLHAITLPYDTQQLS-----KA 134
           + +G  P+G +H+G+ +         Q     ++  I D  A    Y  + LS     + 
Sbjct: 69  VYTGFMPSGPMHIGHKM-VFDELKWHQEFGANVYIPIADDEA----YAARGLSWEETREW 123

Query: 135 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG- 193
             E     +A G D  K  ++ QS      +L      A  +    K + F E     G 
Sbjct: 124 AYEYILDLIALGFDPDKTEIYFQSENIKVYDL------AFELA---KKVNFSELKAIYGF 174

Query: 194 GENVGVALLTYPVLMASDILLYQSDF------VPVGEDQKQHLELTRELAERVNYLYGGR 247
                +  + YP   A+DIL  Q +       VPVG DQ  H+ LTR++AER++  YG  
Sbjct: 175 TGETNIGHIFYPATQAADILHPQLEEGPKPTLVPVGIDQDPHIRLTRDIAERLHGGYGFI 234

Query: 248 K 248
           K
Sbjct: 235 K 235

Length = 368

>gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino acyl-tRNA synthetase

 Score = 42.1 bits (99), Expect = 4e-05
 Identities = 30/164 (18%), Positives = 54/164 (32%), Gaps = 50/164 (30%)

Query: 81  IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAA 140
             SG+ P G +H+G+    +     L  +Y  L + V                       
Sbjct: 2   TFSGITPNGYLHIGHLRTIVTFDF-LAQAYRKLGYKV----------------------- 37

Query: 141 IYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVA 200
             +A  ID++   +   ++ +         + A    W+ ++                  
Sbjct: 38  RCIAL-IDDAGGLIGDPANKK------GENAKAFVERWIERIK----------------E 74

Query: 201 LLTYPVLMASDILL---YQSDFVPVGEDQKQHLELTRELAERVN 241
            + Y  L A+D LL    + D    G DQ  H+EL  EL ++  
Sbjct: 75  DVEYMFLQAADFLLLYETECDIHLGGSDQLGHIELGLELLKKAG 118

Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Length = 143

>gnl|CDD|232889 TIGR00234, tyrS, tyrosyl-tRNA synthetase

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 40/174 (22%), Positives = 68/174 (39%), Gaps = 11/174 (6%)

Query: 78  KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQNSYETLFFIVDLHA-ITLPYDTQQLSK-A 134
           K ++  G  PT  S+HLG+ +  +K     Q  +E +  + D  A I  P    +  K  
Sbjct: 30  KIKLYVGFDPTAPSLHLGHLVPLLKLRDFQQAGHEVIVLLGDATALIGDPSGKSEERKLL 89

Query: 135 TRETAAIY-------LACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKE 187
           TRE            +A  +D  KA     S     +  +  +     I  +N+M++   
Sbjct: 90  TREEVQENAENIKKQIARFLDFEKAKFVNNSEWLLKLNYIDFIRDLGKIFSVNRMLRRDA 149

Query: 188 KSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVN 241
            S +     + ++   YP+L A D +    D    G DQ  ++   R+L  R  
Sbjct: 150 FSSRL-ERGISLSEFIYPLLQAYDFVYLNVDLQIGGSDQWGNILKGRDLIRRNL 202

This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples [Protein synthesis, tRNA aminoacylation]. Length = 377

>gnl|CDD|236286 PRK08560, PRK08560, tyrosyl-tRNA synthetase; Validated

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 44/169 (26%), Positives = 74/169 (43%), Gaps = 20/169 (11%)

Query: 84  GVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKATRETAAI 141
           G +P+G IHLG+ L   K    LQ + ++    + D HA +    D +++ K       +
Sbjct: 36  GFEPSGKIHLGHLLTMNK-LADLQKAGFKVTVLLADWHAYLNDKGDLEEIRKVAEYNKKV 94

Query: 142 YLACGIDNSKASVFV-----QSHVRAHVELMWLLSSATPIGWLNKMIQ-FKEKSHKAGGE 195
           + A G+D  K   FV     Q      + ++ L  + T    L +  +       +   E
Sbjct: 95  FEALGLDPDKTE-FVLGSEFQLDKEYWLLVLKLAKNTT----LARARRSMTIMGRRM--E 147

Query: 196 NVGVALLTYPVLMASDILLYQSDFVPV-GEDQ-KQHLELTRELAERVNY 242
              V+ L YP++  +DI     D + V G DQ K H+ L RE+  ++ Y
Sbjct: 148 EPDVSKLVYPLMQVADIFYLDVD-IAVGGMDQRKIHM-LAREVLPKLGY 194

Length = 329

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	266
PLN02886	389	aminoacyl-tRNA ligase	100.0
COG0180	314	TrpS Tryptophanyl-tRNA synthetase [Translation, ri	100.0
PRK12284	431	tryptophanyl-tRNA synthetase; Reviewed	100.0
KOG2713	347	consensus Mitochondrial tryptophanyl-tRNA syntheta	100.0
PRK12556	332	tryptophanyl-tRNA synthetase; Provisional	100.0
PRK12283	398	tryptophanyl-tRNA synthetase; Reviewed	100.0
PRK00927	333	tryptophanyl-tRNA synthetase; Reviewed	100.0
TIGR00233	328	trpS tryptophanyl-tRNA synthetase. This model repr	100.0
PRK12282	333	tryptophanyl-tRNA synthetase II; Reviewed	100.0
cd00806	280	TrpRS_core catalytic core domain of tryptophanyl-t	100.0
PRK12285	368	tryptophanyl-tRNA synthetase; Reviewed	100.0
PRK08560	329	tyrosyl-tRNA synthetase; Validated	100.0
cd00395	273	Tyr_Trp_RS_core catalytic core domain of tyrosinyl	100.0
PTZ00126	383	tyrosyl-tRNA synthetase; Provisional	100.0
cd00805	269	TyrRS_core catalytic core domain of tyrosinyl-tRNA	100.0
PF00579	292	tRNA-synt_1b: tRNA synthetases class I (W and Y);	100.0
PTZ00348	682	tyrosyl-tRNA synthetase; Provisional	100.0
PRK05912	408	tyrosyl-tRNA synthetase; Validated	100.0
TIGR00234	377	tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA sy	100.0
PRK13354	410	tyrosyl-tRNA synthetase; Provisional	100.0
PLN02486	383	aminoacyl-tRNA ligase	100.0
COG0162	401	TyrS Tyrosyl-tRNA synthetase [Translation, ribosom	100.0
KOG2145	397	consensus Cytoplasmic tryptophanyl-tRNA synthetase	99.95
KOG2144	360	consensus Tyrosyl-tRNA synthetase, cytoplasmic [Tr	99.93
PTZ00348	682	tyrosyl-tRNA synthetase; Provisional	99.9
KOG2623	467	consensus Tyrosyl-tRNA synthetase [Translation, ri	99.87
cd00808	239	GluRS_core catalytic core domain of discriminating	99.28
cd00802	143	class_I_aaRS_core catalytic core domain of class I	99.27
cd00418	230	GlxRS_core catalytic core domain of glutamyl-tRNA	98.02
cd00674	353	LysRS_core_class_I catalytic core domain of class	97.95
PRK00750	510	lysK lysyl-tRNA synthetase; Reviewed	97.69
PRK05710	299	glutamyl-Q tRNA(Asp) synthetase; Reviewed	97.63
cd02156	105	nt_trans nucleotidyl transferase superfamily. nt_t	97.33
cd00671	212	ArgRS_core catalytic core domain of arginyl-tRNA s	97.03
cd00807	238	GlnRS_core catalytic core domain of glutaminyl-tRN	96.88
cd09287	240	GluRS_non_core catalytic core domain of non-discri	96.84
PF00749	314	tRNA-synt_1c: tRNA synthetases class I (E and Q),	96.69
PLN03233	523	putative glutamate-tRNA ligase; Provisional	96.56
TIGR03838	272	queuosine_YadB glutamyl-queuosine tRNA(Asp) synthe	96.55
PRK14895	513	gltX glutamyl-tRNA synthetase; Provisional	96.48
PRK12410	433	glutamylglutaminyl-tRNA synthetase; Provisional	96.42
PRK04156	567	gltX glutamyl-tRNA synthetase; Provisional	96.39
PTZ00402	601	glutamyl-tRNA synthetase; Provisional	96.28
TIGR00463	560	gltX_arch glutamyl-tRNA synthetase, archaeal and e	96.27
COG0008	472	GlnS Glutamyl- and glutaminyl-tRNA synthetases [Tr	96.19
PRK05347	554	glutaminyl-tRNA synthetase; Provisional	96.14
TIGR00467	515	lysS_arch lysyl-tRNA synthetase, archaeal and spir	96.11
PTZ00437	574	glutaminyl-tRNA synthetase; Provisional	96.03
PRK12558	445	glutamyl-tRNA synthetase; Provisional	95.99
TIGR00440	522	glnS glutaminyl-tRNA synthetase. This protein is a	95.9
TIGR00464	470	gltX_bact glutamyl-tRNA synthetase, bacterial fami	95.88
PRK00133	673	metG methionyl-tRNA synthetase; Reviewed	95.86
PLN02907	722	glutamate-tRNA ligase	95.69
PLN02859	788	glutamine-tRNA ligase	95.59
PRK14703	771	glutaminyl-tRNA synthetase/YqeY domain fusion prot	95.49
COG0143	558	MetG Methionyl-tRNA synthetase [Translation, ribos	95.49
PRK01611	507	argS arginyl-tRNA synthetase; Reviewed	95.42
PLN02627	535	glutamyl-tRNA synthetase	95.41
PLN02224	616	methionine-tRNA ligase	94.95
PRK01406	476	gltX glutamyl-tRNA synthetase; Reviewed	94.92
PF09334	391	tRNA-synt_1g: tRNA synthetases class I (M); InterP	94.68
cd00672	213	CysRS_core catalytic core domain of cysteinyl tRNA	94.29
PRK00260	463	cysS cysteinyl-tRNA synthetase; Validated	94.1
PRK12268	556	methionyl-tRNA synthetase; Reviewed	94.07
PF01921	360	tRNA-synt_1f: tRNA synthetases class I (K); InterP	94.03
cd00812	314	LeuRS_core catalytic core domain of leucyl-tRNA sy	93.64
PRK00390	805	leuS leucyl-tRNA synthetase; Validated	93.55
PLN02610	801	probable methionyl-tRNA synthetase	93.42
TIGR00398	530	metG methionyl-tRNA synthetase. The methionyl-tRNA	93.11
PRK11893	511	methionyl-tRNA synthetase; Reviewed	92.76
cd00814	319	MetRS_core catalytic core domain of methioninyl-tR	92.34
cd00668	312	Ile_Leu_Val_MetRS_core catalytic core domain of is	92.18
PRK12267	648	methionyl-tRNA synthetase; Reviewed	92.08
cd00818	338	IleRS_core catalytic core domain of isoleucyl-tRNA	91.55
COG1384	521	LysS Lysyl-tRNA synthetase (class I) [Translation,	91.37
cd00817	382	ValRS_core catalytic core domain of valyl-tRNA syn	91.02
PRK14536	490	cysS cysteinyl-tRNA synthetase; Provisional	90.61
TIGR00396	842	leuS_bact leucyl-tRNA synthetase, eubacterial and	90.33
COG0495	814	LeuS Leucyl-tRNA synthetase [Translation, ribosoma	89.36
TIGR00435	465	cysS cysteinyl-tRNA synthetase. This model finds t	88.24
PRK13208	800	valS valyl-tRNA synthetase; Reviewed	86.77
PLN02563	963	aminoacyl-tRNA ligase	86.69
KOG1147	712	consensus Glutamyl-tRNA synthetase [Translation, r	86.08
PLN02946	557	cysteine-tRNA ligase	85.22
TIGR00422	861	valS valyl-tRNA synthetase. The valyl-tRNA synthet	84.57
PTZ00419	995	valyl-tRNA synthetase-like protein; Provisional	84.5
COG0525	877	ValS Valyl-tRNA synthetase [Translation, ribosomal	84.47
PLN02943	958	aminoacyl-tRNA ligase	83.46
PRK05729	874	valS valyl-tRNA synthetase; Reviewed	80.5

>PLN02886 aminoacyl-tRNA ligase

Probab=100.00  E-value=3.5e-61  Score=459.93  Aligned_cols=209  Identities=76%  Similarity=1.192  Sum_probs=187.6

Q ss_pred             ceeeeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeeecCCCHHHHHHHHH
Q 024523           57 RCYCNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATR  136 (266)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~g~~v~ilIADlhA~~~~~~~e~ir~~~~  136 (266)
                      +|+++.++..+.++.+++.....++|+||||||.+|||||+|+|++|++||++++++|+||||||++.+.++++++++++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~m~~~~v~sGiqPSG~lHLGnylGai~~~v~lQ~~~~~~~~IADlHAlt~~~~~~~lr~~~~  104 (389)
T PLN02886         25 CCSAATAATAPEKEAPPKVARKKRVVSGVQPTGSIHLGNYLGAIKNWVALQETYDTFFCVVDLHAITLPHDPRELGKATR  104 (389)
T ss_pred             hhhhhhccCCCccCCCcccCCCCeEEEEECCCCccHHHHHHHHHHHHHHHhccCCEEEEEecHHHhhCCCCHHHHHHHHH
Confidence            34444443444444444445567899999999999999999999999999999999999999999999889999999999


Q ss_pred             HHHHHHHHcCcCCCceEEEEcccchhhhHHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcC
Q 024523          137 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQ  216 (266)
Q Consensus       137 ~~~~~~lA~GlDp~Kt~if~qSd~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~  216 (266)
                      +++++|+||||||+|+.||+||++++|.+|+|+|+|.+++++|+||+|||++.+..+++++++|+|+||+|||||||+|+
T Consensus       105 ~~~a~~lA~GlDP~ks~if~QS~v~e~~eL~wil~~~t~~g~L~R~~q~K~k~~~~~~~~~~~gll~YPvLqAADILl~~  184 (389)
T PLN02886        105 STAAIYLACGIDPSKASVFVQSHVPAHAELMWLLSCSTPIGWLNKMIQFKEKSRKAGDENVGVGLLTYPVLMASDILLYQ  184 (389)
T ss_pred             HHHHHHHHcCcCccceEEEEeCCCchhHHHHHHHHhhCcHHHHHhcchHHHHHHhcCCCCCChHhhhChHHHHhhhhhcC
Confidence            99999999999999999999999999999999999999999999999999998776556789999999999999999999


Q ss_pred             CCEEEecCcchHHHHHHHHHHHHhhhhhCCCcccccCCCCCceeccCCC
Q 024523          217 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVDSL  265 (266)
Q Consensus       217 adlvpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~k~g~~~~~if~~p~~  265 (266)
                      +|+||||+||+||+|||||||+|||+.||.+.++++|++.+.+|++|++
T Consensus       185 a~~VPVG~DQ~qH~eLtRdiA~rfN~~y~~~~~~~~~~~~~~~f~~P~~  233 (389)
T PLN02886        185 ADLVPVGEDQKQHLELTRDIAERVNNLYGGRKWKKLGGRGGSVFKVPEA  233 (389)
T ss_pred             CCeEEEccchHHHHHHHHHHHHHHhhhccccccccccccCCceecCCee
Confidence            9999999999999999999999999999866666778777778888864

>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=4.1e-57  Score=421.09  Aligned_cols=170  Identities=60%  Similarity=0.980  Sum_probs=162.8

Q ss_pred             CCCceEEEecCCCCcchhhhHHHHHHHHHHHhcc-CcEEEEEecceeeecCCCH--HHHHHHHHHHHHHHHHcCcCCCce
Q 024523           76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDT--QQLSKATRETAAIYLACGIDNSKA  152 (266)
Q Consensus        76 ~~~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~g-~~v~ilIADlhA~~~~~~~--e~ir~~~~~~~~~~lA~GlDp~Kt  152 (266)
                      ..+++|+||++|||.||||||+|++++|+++|++ ++++|+|||+||+|.+.++  +.+++++++++++|+|+||||+|+
T Consensus         3 ~~~~~vlSG~~PSG~lHLGny~ga~~~~v~~q~~~~~~f~~IaDlha~t~~~~~~~~~l~~~~~e~~a~~LA~GiDP~k~   82 (314)
T COG0180           3 MKKFRVLSGIQPSGKLHLGNYLGAIRNWVLLQEEYYECFFFIADLHAITVRQDPTEEDLRQATREVAADYLAVGLDPEKS   82 (314)
T ss_pred             CCCceEEecCCCCCCcchhHhHHHHHHHHHHhcccCceEEEEecHHHhhcCCCChHHHHHHHHHHHHHHHHHhccCcccc
Confidence            4578999999999999999999999999999997 5999999999999997765  899999999999999999999999


Q ss_pred             EEEEcccchhhhHHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEecCcchHHHHH
Q 024523          153 SVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLEL  232 (266)
Q Consensus       153 ~if~qSd~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ~~hleL  232 (266)
                      +||+||++++|.+|.|+|+|.+++++|+|+.+||++..+.+ +++++|+|.||+|||||||+|++++||||.||+||+||
T Consensus        83 ~if~QS~v~e~~eLa~~l~~~~~~gel~r~~~fKdk~~~~~-~~~~~Gl~~YPvlqAADILl~~a~~VPVG~DQ~qHleL  161 (314)
T COG0180          83 TIFLQSEVPEHAELAWLLSCVTNFGELERMTQFKDKSAKKG-ESIPIGLLTYPVLQAADILLYQATLVPVGEDQDQHLEL  161 (314)
T ss_pred             EEEEccCchHHHHHHHHHHccCcHHHHHhhcCcchhhhccc-ccccccchhccHHHHHHhhhccCCeeccCCCchHHHHH
Confidence            99999999999999999999999999999999999987755 68999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhCC
Q 024523          233 TRELAERVNYLYGG  246 (266)
Q Consensus       233 aRdiA~r~n~~yg~  246 (266)
                      |||||+|||+.||.
T Consensus       162 tRDiA~rfn~~y~~  175 (314)
T COG0180         162 TRDIARRFNHLYGE  175 (314)
T ss_pred             HHHHHHHHHhhcCC
Confidence            99999999999994

>PRK12284 tryptophanyl-tRNA synthetase; Reviewed

Probab=100.00  E-value=6.7e-56  Score=427.19  Aligned_cols=169  Identities=41%  Similarity=0.720  Sum_probs=159.2

Q ss_pred             CceEEEecCCCCcchhhhHHHHHHHHHHHhc--cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEE
Q 024523           78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQN--SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVF  155 (266)
Q Consensus        78 ~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~--g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if  155 (266)
                      ..+|||||+|||.+|||||+|+|++|+++|+  +++++|+||||||+|++.+++++++++++++++|+||||||+|++||
T Consensus         2 ~~rvlSGiqPTG~lHLGNylGaik~~v~lq~q~~~~~~~~IADlHAlT~~~dp~~lr~~~~e~aa~~LA~GlDPek~~if   81 (431)
T PRK12284          2 TTRVLTGITTTGTPHLGNYAGAIRPAIAASRQPGVESFYFLADYHALIKCDDPARIQRSTLEIAATWLAAGLDPERVTFY   81 (431)
T ss_pred             ceEEEEEecCCCcchHHHHHHHHHHHHHHHHhCCCcEEEEeechhhccCCCCHHHHHHHHHHHHHHHHHhCCCccceEEE
Confidence            4589999999999999999999999999976  89999999999999988899999999999999999999999999999


Q ss_pred             EcccchhhhHHHHHHhccCCHHHHhchhhHHHhhhhc---C---CCCccchhhhchHHHHHhhhhcCCCEEEecCcchHH
Q 024523          156 VQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA---G---GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQH  229 (266)
Q Consensus       156 ~qSd~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~---g---~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ~~h  229 (266)
                      +||++++|.||+|+|+|.+++++|+|+++||++..+.   +   .+++++|+|+||+|||||||+|++|+||||+||+||
T Consensus        82 ~QSdvpeh~EL~wiL~~it~~g~L~Rm~q~K~k~~~~~~~g~~~~~~i~~Gll~YPvLqAADILly~ad~VPVG~DQ~qH  161 (431)
T PRK12284         82 RQSDIPEIPELTWLLTCVAGKGLLNRAHAYKAAVDKNVAAGEDPDAGVTAGLFMYPVLMAADILMFNAHKVPVGRDQIQH  161 (431)
T ss_pred             ECCcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHhhhccccCcccCcchHHhhchHHHHhhhhhcCCCEEEEcchhHHH
Confidence            9999999999999999999999999999999875332   1   245899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhCC
Q 024523          230 LELTRELAERVNYLYGG  246 (266)
Q Consensus       230 leLaRdiA~r~n~~yg~  246 (266)
                      +||+||||+|||+.||.
T Consensus       162 lELaRdIA~rFN~~yg~  178 (431)
T PRK12284        162 IEMARDIAQRFNHLYGG  178 (431)
T ss_pred             HHHHHHHHHHHhhhcCC
Confidence            99999999999999974

>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=7.3e-56  Score=404.71  Aligned_cols=171  Identities=60%  Similarity=0.900  Sum_probs=164.2

Q ss_pred             CceEEEecCCCCcchhhhHHHHHHHHHHHhccC----cEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceE
Q 024523           78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSY----ETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKAS  153 (266)
Q Consensus        78 ~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~g~----~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~  153 (266)
                      +.++++||||||.+|||||+|++++|++||+.+    .++|+|+|+||++.|.++.++|+++.++++.++|||+||+|+.
T Consensus        13 ~~rvfSGIQPTG~~HLGNYLGai~~Wv~LQ~~~d~~~~~~f~vvDlHaITvp~dp~~lrq~~~dm~A~lLAcGIdp~Ks~   92 (347)
T KOG2713|consen   13 PKRVFSGIQPTGIPHLGNYLGAIKPWVQLQNEYDKNILVLFSVVDLHAITVPQDPAELRQATHDMAASLLACGIDPEKSS   92 (347)
T ss_pred             cceeEeccCCCCCchhhhhhhhhhHHHHHHHHhcCCceEEEEEeeceeecCCCChHHHHHHHHHHHHHHHHhccCcccce
Confidence            789999999999999999999999999999944    3799999999999999999999999999999999999999999


Q ss_pred             EEEcccchhhhHHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEecCcchHHHHHH
Q 024523          154 VFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELT  233 (266)
Q Consensus       154 if~qSd~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ~~hleLa  233 (266)
                      +|+||++++|.|+.|+|+|.++++||+||+|||++..+++...+++|+|+||+|||||||+|++++||||+||.||+||+
T Consensus        93 lF~QS~Vpqh~el~WlLsslt~mg~L~rm~Q~KeKs~~~~~~~~~vGLftYPvLqAADILLYksThVPVGeDQsQHleL~  172 (347)
T KOG2713|consen   93 LFVQSDVPQHAELSWLLSSLTTMGRLARMPQWKEKSERFKVGDVPVGLFTYPVLQAADILLYKSTHVPVGEDQSQHLELA  172 (347)
T ss_pred             eeeeccchHHHHHHHHHHhccchHHHHhhHHHHhhhhhhccCccceeeecchhHhhhhHhhhccccccCCccHHHHHHHH
Confidence            99999999999999999999999999999999999877666789999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhCCCc
Q 024523          234 RELAERVNYLYGGRK  248 (266)
Q Consensus       234 RdiA~r~n~~yg~~~  248 (266)
                      |++|++||..||.++
T Consensus       173 r~lA~~fN~~Y~~~~  187 (347)
T KOG2713|consen  173 RHLAQAFNKTYGTEI  187 (347)
T ss_pred             HHHHHHHhhhccCee
Confidence            999999999999654

>PRK12556 tryptophanyl-tRNA synthetase; Provisional

Probab=100.00  E-value=2e-55  Score=413.75  Aligned_cols=169  Identities=41%  Similarity=0.712  Sum_probs=158.1

Q ss_pred             CceEEEecCCCCcchhhhHHHHHHHHHHHhc--cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEE
Q 024523           78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQN--SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVF  155 (266)
Q Consensus        78 ~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~--g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if  155 (266)
                      +.++|+|+||||.+|||||+|++++|+++|+  +++++|+||||||++.+.+++++++++++++++|+||||||+|++||
T Consensus         3 ~~~v~sGiqPTG~~HLGnylga~k~~~~lq~~~~~~~~~~IADlHalt~~~~~~~l~~~~~~~~~~~lA~GlDP~k~~if   82 (332)
T PRK12556          3 EKIMLTGIKPTGYPHLGNYIGAIKPALQMAKNYEGKALYFIADYHALNAVHDPEQFRSYTREVAATWLSLGLDPEDVIFY   82 (332)
T ss_pred             CCEEEEEECCCCcchHHHHHHHHHHHHHHHHhcCCeEEEEEechhhccCCCCHHHHHHHHHHHHHHHhheeecccceEEE
Confidence            4689999999999999999999999999987  45599999999999877899999999999999999999999999999


Q ss_pred             EcccchhhhHHHHHHhccCCHHHHhchhhHHHhhhhc-----C-CCCccchhhhchHHHHHhhhhcCCCEEEecCcchHH
Q 024523          156 VQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA-----G-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQH  229 (266)
Q Consensus       156 ~qSd~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~-----g-~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ~~h  229 (266)
                      +||++++|++|.|+++|.++++||+||++||++....     + ++++++|+++||+|||||||+|++|+||||+||+||
T Consensus        83 ~qS~v~~~~eL~~il~~~t~~g~L~R~~~~K~k~~~~~~~~~~~~~~~~~gll~YPvLqAADIl~~~~d~VpvG~DQ~qh  162 (332)
T PRK12556         83 RQSDVPEIFELAWILSCLTPKGLMNRAHAYKAKVDQNKEAGLDLDAGVNMGLYTYPILMAADILLFQATHVPVGKDQIQH  162 (332)
T ss_pred             ECCCchHHHHHHHHHHccchHHHHHhccHHHHHHhhhhhhccccCCCCcchhhhchHHHhhhhhhccCCEEEeccccHHH
Confidence            9999999999999999999999999999999986532     1 246899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhCC
Q 024523          230 LELTRELAERVNYLYGG  246 (266)
Q Consensus       230 leLaRdiA~r~n~~yg~  246 (266)
                      +|||||+|+|||++||.
T Consensus       163 leLtRdiA~rfn~~yg~  179 (332)
T PRK12556        163 IEIARDIATYFNHTFGD  179 (332)
T ss_pred             HHHHHHHHHHHHHhccc
Confidence            99999999999999974

>PRK12283 tryptophanyl-tRNA synthetase; Reviewed

Probab=100.00  E-value=5.2e-55  Score=417.84  Aligned_cols=168  Identities=43%  Similarity=0.817  Sum_probs=160.3

Q ss_pred             ceEEEecCCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeeecC-CCHHHHHHHHHHHHHHHHHcCcCCCceEEEEc
Q 024523           79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNSKASVFVQ  157 (266)
Q Consensus        79 ~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~g~~v~ilIADlhA~~~~-~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~q  157 (266)
                      .+||+|+||||.||||||+|++++|+++|++++++|+||||||+|++ .+++++++++.+++++|+|||+||+|+.||+|
T Consensus         3 ~~v~sGiqPSG~~HLGnylG~ik~wv~lq~~~~~~~~IADlHAlt~~~~d~~~ir~~~~~~~a~~lA~GlDP~k~~if~Q   82 (398)
T PRK12283          3 DRVLSGMRPTGRLHLGHYHGVLKNWVKLQHEYECFFFVADWHALTTHYETPEVIEKNVWDMVIDWLAAGVDPAQATLFIQ   82 (398)
T ss_pred             cEEEEEeCCCCcchHHHHHHHHHHHHHHhcCCcEEEEeecHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEEC
Confidence            47999999999999999999999999999999999999999999985 49999999999999999999999999999999


Q ss_pred             ccchhhhHHHHHHhccCCHHHHhchhhHHHhhhhcC-CCCccchhhhchHHHHHhhhhcCCCEEEecCcchHHHHHHHHH
Q 024523          158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL  236 (266)
Q Consensus       158 Sd~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g-~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ~~hleLaRdi  236 (266)
                      |++++|++|+|+|+|.+++++|+|+++||++..+.. .+++++|+++||+|||||||+|++|+||||+||+||+||+|||
T Consensus        83 S~v~eh~eL~wil~~~t~~~~L~R~~~~Kdk~~~~~~~~~~~~Gll~YPvLqAADILl~~a~iVPVG~DQ~qHleLaRdI  162 (398)
T PRK12283         83 SKVPEHAELHLLLSMITPLGWLERVPTYKDQQEKLKEKDLSTYGFLGYPLLQSADILIYRAGLVPVGEDQVPHVEMTREI  162 (398)
T ss_pred             CCchHHHHHHHHHHhhccHHHHHhhhHHHHHHhhhccccCCcchhhcCcHHHHHHHHhcCCCEeeeccccHHHHHHHHHH
Confidence            999999999999999999999999999999876532 3678999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhCC
Q 024523          237 AERVNYLYGG  246 (266)
Q Consensus       237 A~r~n~~yg~  246 (266)
                      |+|||+.||.
T Consensus       163 A~rfN~~yg~  172 (398)
T PRK12283        163 ARRFNHLYGR  172 (398)
T ss_pred             HHHHHHhcCc
Confidence            9999999995

>PRK00927 tryptophanyl-tRNA synthetase; Reviewed

Probab=100.00  E-value=3.8e-54  Score=404.93  Aligned_cols=166  Identities=64%  Similarity=1.082  Sum_probs=159.8

Q ss_pred             ceEEEecCCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcc
Q 024523           79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQS  158 (266)
Q Consensus        79 ~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~qS  158 (266)
                      .++|+|++|||+||||||+|++++|++||+.++++|+||||||+|++.+++++++++++++++|+|+|+||+|++||+||
T Consensus         2 ~~v~~G~~PTG~lHLG~~~g~~~~~~~lQ~~~~~~~~IaD~ha~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~qS   81 (333)
T PRK00927          2 KRVLSGIQPTGKLHLGNYLGAIKNWVELQDEYECFFCIADLHALTVPQDPEELRENTRELAADYLACGIDPEKSTIFVQS   81 (333)
T ss_pred             CEEEEeeCCCccchHHhHHHHHHHHHHHHhcCCeEEEEecHHHHhCCCCHHHHHHHHHHHHHHHHeEccChhheEEEEeC
Confidence            58999999999999999999999999999999999999999999998899999999999999999999999999999999


Q ss_pred             cchhhhHHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEecCcchHHHHHHHHHHH
Q 024523          159 HVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAE  238 (266)
Q Consensus       159 d~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ~~hleLaRdiA~  238 (266)
                      +|++|.+++|++++.+++++|+|+++||++.++. ++++++|+|+||+|||||||++++|+||||+||+||+|||||+|+
T Consensus        82 ~~~~~~el~~~l~~~~~~~~l~r~~~~k~~~~~~-~~~~~~g~~~YP~lQaaDil~~~~divpvG~DQ~~h~elaRdia~  160 (333)
T PRK00927         82 HVPEHAELAWILNCITPLGELERMTQFKDKSAKQ-KENVSAGLFTYPVLMAADILLYKADLVPVGEDQKQHLELTRDIAR  160 (333)
T ss_pred             CCchhHHHHHHHHhhhhHHHHHhhhhHHHHHhcc-CCCCCcHhhhcHHHHHHHHHhcCCCEEeeccchHHHHHHHHHHHH
Confidence            9999999999999999999999999999886543 378899999999999999999999999999999999999999999


Q ss_pred             HhhhhhC
Q 024523          239 RVNYLYG  245 (266)
Q Consensus       239 r~n~~yg  245 (266)
                      |||++||
T Consensus       161 ~~n~~~~  167 (333)
T PRK00927        161 RFNNLYG  167 (333)
T ss_pred             Hhhhhcc
Confidence            9999987

>TIGR00233 trpS tryptophanyl-tRNA synthetase

Probab=100.00  E-value=3.6e-53  Score=397.79  Aligned_cols=166  Identities=52%  Similarity=0.780  Sum_probs=158.3

Q ss_pred             CCceEEEecCCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeeecCC--CHHHHHHHHHHHHHHHHHcCcCCCceEE
Q 024523           77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPY--DTQQLSKATRETAAIYLACGIDNSKASV  154 (266)
Q Consensus        77 ~~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~g~~v~ilIADlhA~~~~~--~~e~ir~~~~~~~~~~lA~GlDp~Kt~i  154 (266)
                      +++++|+|++|||.+|||||+|+++.|..+|.|++++|+||||||+|++.  +++.+++++++++++|+||||||+|++|
T Consensus         1 ~~~~v~~G~~PTG~~HlG~~l~~~~~~~~~q~~~~~~i~IaD~ha~t~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~i   80 (328)
T TIGR00233         1 KKFRVLTGIQPSGKMHLGHYLGAIQTKWLQQFGVELFICIADLHAITVKDNTDPDALRKAREELAADILAVGLDPKKTFI   80 (328)
T ss_pred             CCCEEEEeeCCCcHhHHHHHHHHHHHHHHHhCCCCEEEEeecchhhcCCCCCCHHHHHHHHHHHHHHHHHhCcChhheEE
Confidence            47899999999999999999999999988888999999999999999865  8899999999999999999999999999


Q ss_pred             EEcccchhhhHHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEecCcchHHHHHHH
Q 024523          155 FVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTR  234 (266)
Q Consensus       155 f~qSd~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ~~hleLaR  234 (266)
                      |+||++++|+++.|+|+|.+|+++|+|+.+||++..   .+++++|+|+||+|||||||++++|+||||+||+||+||||
T Consensus        81 f~qS~~~e~~el~~~l~~~~t~~~l~r~~~~k~k~~---~~~~~~g~l~YP~lqaaDil~~~~d~vpvG~DQ~~h~elaR  157 (328)
T TIGR00233        81 FLQSDYPEHYELAWLLSCQVTFGELKRMTQFKDKSQ---AENVPIGLFSYPVLQAADILLYQADLVPVGIDQDQHLELTR  157 (328)
T ss_pred             EEcCCcHHHHHHHHHHHccCCHHHHHhccCcchhcc---CCCCCchhhcchHHHHhhhhhcCCCeeecccccHHHHHHHH
Confidence            999999999999999999999999999999998752   26789999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhC
Q 024523          235 ELAERVNYLYG  245 (266)
Q Consensus       235 diA~r~n~~yg  245 (266)
                      |+|+|||++||
T Consensus       158 dia~r~n~~~~  168 (328)
T TIGR00233       158 DLAERFNKKFK  168 (328)
T ss_pred             HHHHHhhhhcC
Confidence            99999999998

This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.

>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed

Probab=100.00  E-value=3.4e-52  Score=392.00  Aligned_cols=169  Identities=37%  Similarity=0.620  Sum_probs=159.8

Q ss_pred             CceEEEecCCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeeec-CCCHHHHHHHHHHHHHHHHHcCcCCCceEEEE
Q 024523           78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSKASVFV  156 (266)
Q Consensus        78 ~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~g~~v~ilIADlhA~~~-~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~  156 (266)
                      +.++|||++|||.+|||||+|++++|++||+.++++|+||||||+++ +.+++++++++++++++|+|+||||+|++||+
T Consensus         2 ~~~v~sG~~PTG~~HLGn~l~~~~~~~~lQ~~~~~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~G~dp~k~~i~~   81 (333)
T PRK12282          2 KPIILTGDRPTGKLHLGHYVGSLKNRVALQNEHEQFVLIADQQALTDNAKNPEKIRRNILEVALDYLAVGIDPAKSTIFI   81 (333)
T ss_pred             CCEEEEeeCCCCcchHHHHHHHHHHHHHHHhCCCEEEEEccchhHhCCCCCHHHHHHHHHHHHHHHHHhCcChhHeEEEE
Confidence            35899999999999999999999999999997679999999999997 68999999999999999999999999999999


Q ss_pred             cccchhhhHHHHHHhccCCHHHHhchhhHHHhhhhcC-CCCccchhhhchHHHHHhhhhcCCCEEEecCcchHHHHHHHH
Q 024523          157 QSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRE  235 (266)
Q Consensus       157 qSd~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g-~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ~~hleLaRd  235 (266)
                      ||+|++|.++.|++++.++++|++|+.+||++...++ ++++++|+++||+||||||+++++|+||||+||+||+||+||
T Consensus        82 qS~~~e~~~l~~~l~~~~~~~~l~r~~~~k~~~~~~~~~~~~~~g~l~YP~lqaaDIl~~~~d~vpvG~DQ~~h~~laRd  161 (333)
T PRK12282         82 QSQIPELAELTMYYMNLVTVARLERNPTVKTEIAQKGFGRSIPAGFLTYPVSQAADITAFKATLVPVGDDQLPMIEQTRE  161 (333)
T ss_pred             CCcchHHHHHHHHHHhhchHHHHhhchHHHHHHhccCCCCCCcchhhcchHHHHHHHHhhCCCEEEeccccHHHHHHHHH
Confidence            9999999999999999999999999999998765543 467899999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhCC
Q 024523          236 LAERVNYLYGG  246 (266)
Q Consensus       236 iA~r~n~~yg~  246 (266)
                      +|+|||+.||.
T Consensus       162 iA~~~n~~~~~  172 (333)
T PRK12282        162 IVRRFNSLYGT  172 (333)
T ss_pred             HHHHHhhhcCC
Confidence            99999999983

>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase

Probab=100.00  E-value=1.8e-51  Score=378.57  Aligned_cols=164  Identities=56%  Similarity=0.968  Sum_probs=157.7

Q ss_pred             eEEEecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCC-CHHHHHHHHHHHHHHHHHcCcCCCceEEEEc
Q 024523           80 RIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGIDNSKASVFVQ  157 (266)
Q Consensus        80 ~iytGi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~-~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~q  157 (266)
                      ++|+|++|||.+|||||++++++|++||+ |++++|+|||+||++++. +++++++++++++++|+|+||||+|++||+|
T Consensus         1 ~i~tG~~PTG~lHLG~~~~al~~~~~lQ~ag~~~~~~IaD~ha~t~~~~~~~~~~~~~~~~~~~~lA~G~dp~k~~i~~q   80 (280)
T cd00806           1 RVLSGIQPSGSLHLGHYLGAFRFWVWLQEAGYELFFFIADLHALTVKQLDPEELRQNTRENAKDYLACGLDPEKSTIFFQ   80 (280)
T ss_pred             CEEEeeCCCchhhHHHHHHHHHHHHHHHhCCCCEEEEecchHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCcccCEEEEc
Confidence            58999999999999999998899999999 999999999999999976 9999999999999999999999999999999


Q ss_pred             ccchhhhHHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEecCcchHHHHHHHHHH
Q 024523          158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA  237 (266)
Q Consensus       158 Sd~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ~~hleLaRdiA  237 (266)
                      |++++|.++.|+|+|.+++++|+|+.+||++.+.  .+++++|+|+||+||||||+++++|+||||+||+||+||+||+|
T Consensus        81 S~~~~~~~l~~~l~~~~~~~~l~r~~~fk~~~~~--~~~~~~g~~~YP~lqaaDil~~~~~~vpvG~DQ~~h~~l~Rdia  158 (280)
T cd00806          81 SDVPEHYELAWLLSCVVTFGELERMTGFKDKSAQ--GESVNIGLLTYPVLQAADILLYKACLVPVGIDQDPHLELTRDIA  158 (280)
T ss_pred             CCcHHHHHHHHHHhCcCCHHHHHhccchhhhhcc--CCCCcchhhcchHHHHhhhhhccCCEEeeccccHHHHHHHHHHH
Confidence            9999999999999999999999999999998664  36889999999999999999999999999999999999999999


Q ss_pred             HHhhhhhC
Q 024523          238 ERVNYLYG  245 (266)
Q Consensus       238 ~r~n~~yg  245 (266)
                      +|||++||
T Consensus       159 ~r~n~~~~  166 (280)
T cd00806         159 RRFNKLYG  166 (280)
T ss_pred             HHhccccc
Confidence            99998875

Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding

>PRK12285 tryptophanyl-tRNA synthetase; Reviewed

Probab=100.00  E-value=3.5e-49  Score=375.92  Aligned_cols=177  Identities=25%  Similarity=0.340  Sum_probs=163.5

Q ss_pred             CCCceEEEecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeec-CCCHHHHHHHHHHHHHHHHHcCcCCCceE
Q 024523           76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSKAS  153 (266)
Q Consensus        76 ~~~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~-~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~  153 (266)
                      ++++++|||++|||.||||||++ +.+|++||+ |++++|+|||+||+++ +.+++++++++++++++|+|+||||+|++
T Consensus        64 ~~~~~iytG~~PSG~lHLGh~~~-~~~~~~lQ~~g~~~~i~IaD~ha~~~~~~~~e~~~~~~~~~~~~~lA~G~Dp~k~~  142 (368)
T PRK12285         64 GKPFAVYTGFMPSGPMHIGHKMV-FDELKWHQEFGANVYIPIADDEAYAARGLSWEETREWAYEYILDLIALGFDPDKTE  142 (368)
T ss_pred             CCCeEEEEccCCCCCccHHHHHH-HHHHHHHHhcCCCEEEEecchHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccceE
Confidence            46899999999999999999986 569999999 8999999999999998 57999999999999999999999999999


Q ss_pred             EEEcccchhhhHHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhh------cCCCEEEecCcch
Q 024523          154 VFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILL------YQSDFVPVGEDQK  227 (266)
Q Consensus       154 if~qSd~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~------l~adlvpvG~DQ~  227 (266)
                      ||+||++++|.++.|.+++.+|+++++|+.+|+        +++++|+++||+|||||||+      +++|+||||+||+
T Consensus       143 i~~qS~~~~~~~l~~~l~~~~t~~~l~r~~~f~--------~~~~~g~~~YP~lQaADil~~~~~~~~~~~lvPvG~DQ~  214 (368)
T PRK12285        143 IYFQSENIKVYDLAFELAKKVNFSELKAIYGFT--------GETNIGHIFYPATQAADILHPQLEEGPKPTLVPVGIDQD  214 (368)
T ss_pred             EEECCchHHHHHHHHHHHhhCcHHHHHHhhCCC--------CCCchhhhhhhHHHHHHHHhhcccccCCceEEEeccchH
Confidence            999999999999999999999999999988763        56899999999999999999      7889999999999


Q ss_pred             HHHHHHHHHHHHhhhhhCCCc-------------ccccCCCC--Cceec
Q 024523          228 QHLELTRELAERVNYLYGGRK-------------WKKLGGRG--GAIFK  261 (266)
Q Consensus       228 ~hleLaRdiA~r~n~~yg~~~-------------~~k~g~~~--~~if~  261 (266)
                      ||+|||||+|+|||..||...             ++||.||.  ++||-
T Consensus       215 ~h~~ltRdiA~r~n~~~gf~~P~~l~~~~lpgL~G~KMSkS~~~s~I~L  263 (368)
T PRK12285        215 PHIRLTRDIAERLHGGYGFIKPSSTYHKFMPGLTGGKMSSSKPESAIYL  263 (368)
T ss_pred             HHHHHHHHHHHHHhhhcCCCCchhHhhhcccCCCCCcCCCCCCCCeeec
Confidence            999999999999999998643             57999984  36663

>PRK08560 tyrosyl-tRNA synthetase; Validated

Probab=100.00  E-value=1.3e-46  Score=353.20  Aligned_cols=179  Identities=25%  Similarity=0.396  Sum_probs=157.5

Q ss_pred             CCCceEEEecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecC-CCHHHHHHHHHHHHHHHHHcCcCCCceE
Q 024523           76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNSKAS  153 (266)
Q Consensus        76 ~~~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~-~~~e~ir~~~~~~~~~~lA~GlDp~Kt~  153 (266)
                      .+++++|+|++|||++||||+++ +.+|++||+ |++++|+||||||++++ .+++++++++++++++|+|+|+||+|++
T Consensus        28 ~~~~~v~~G~~PTG~lHLG~~~~-~~~~~~lq~~g~~~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~~A~G~dp~k~~  106 (329)
T PRK08560         28 KEEPKAYIGFEPSGKIHLGHLLT-MNKLADLQKAGFKVTVLLADWHAYLNDKGDLEEIRKVAEYNKKVFEALGLDPDKTE  106 (329)
T ss_pred             CCCCEEEEccCCCCcchhhhhHH-HHHHHHHHHCCCeEEEEEccchhhcCCCCCHHHHHHHHHHHHHHHHHcCCChhheE
Confidence            56889999999999999999874 569999999 99999999999999995 6999999999999999999999999999


Q ss_pred             EEEcccchhhh---HHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEecCcchHHH
Q 024523          154 VFVQSHVRAHV---ELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHL  230 (266)
Q Consensus       154 if~qSd~~~~~---eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ~~hl  230 (266)
                      ||+||+|+++.   .+.|.+++.+++++++|+.+++.+  . . ++.++|+|+||+|||||||+|++|+||||.||+||+
T Consensus       107 i~~qS~~~~~~~~~~~~~~l~~~~~~~~l~r~~~~~~~--~-~-~~~~~g~l~YP~lqaaDil~~~ad~vpvG~DQ~~h~  182 (329)
T PRK08560        107 FVLGSEFQLDKEYWLLVLKLAKNTTLARARRSMTIMGR--R-M-EEPDVSKLVYPLMQVADIFYLDVDIAVGGMDQRKIH  182 (329)
T ss_pred             EEecchhhccchHHHHHHHHHhhccHHHHHHhhhhhcc--c-C-CCCCHHHHHHHHHHHHHHHHhCCCEEEechhHHHHH
Confidence            99999998765   455569999999999998887542  2 2 346999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhh----------CCCcc--cccCCCC-C-cee
Q 024523          231 ELTRELAERVNYLY----------GGRKW--KKLGGRG-G-AIF  260 (266)
Q Consensus       231 eLaRdiA~r~n~~y----------g~~~~--~k~g~~~-~-~if  260 (266)
                      +|+||+|+|||+.-          |.+ +  +||+||. + +||
T Consensus       183 ~l~Rdia~~~n~~~p~~l~~~~l~~L~-g~~~KMSKS~p~~~I~  225 (329)
T PRK08560        183 MLAREVLPKLGYKKPVCIHTPLLTGLD-GGGIKMSKSKPGSAIF  225 (329)
T ss_pred             HHHHHhhHhcCCCCceEEEcCccCCCC-CCCCCCcCCCCCCeec
Confidence            99999999999642          111 3  3999987 4 665

>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase

Probab=100.00  E-value=3.7e-46  Score=342.34  Aligned_cols=176  Identities=30%  Similarity=0.475  Sum_probs=159.6

Q ss_pred             eEEEecCCCC-cchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCC----------CHHHHHHHHHHHHHHHHHcCc
Q 024523           80 RIVSGVQPTG-SIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY----------DTQQLSKATRETAAIYLACGI  147 (266)
Q Consensus        80 ~iytGi~PTG-~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~----------~~e~ir~~~~~~~~~~lA~Gl  147 (266)
                      .+|+|++||| .+|||||++ +.+|++||+ |++++++|||+||+++..          +++++++++++++++++|+|+
T Consensus         1 ~iy~G~~PTg~~lHlGh~~~-l~~~~~lq~~g~~~~~~I~d~~a~~~d~sg~~~~r~~~~~~~i~~n~~~~~~~~~a~g~   79 (273)
T cd00395           1 TLYCGIDPTADSLHIGHLIG-LLTFRRFQHAGHRPIFLIGGQTGIIGDPSGKKSERTLNDPEEVRQNIRRIAAQYLAVGI   79 (273)
T ss_pred             CeEEeEcCCCCCccHHHHHH-HHHHHHHHHCCCCEEEEEecCceeeCCCCCccccccCCCHHHHHHHHHHHHHHHHHhcC
Confidence            4899999999 599999999 679999999 999999999999999843          799999999999999999999


Q ss_pred             C--CCceEEEEcccch---hhhHHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCC----C
Q 024523          148 D--NSKASVFVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQS----D  218 (266)
Q Consensus       148 D--p~Kt~if~qSd~~---~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~a----d  218 (266)
                      |  |+|++||.||+|+   +|.++.|.+++.+++++|.|+.+||++..    +++++|+|+||+||||||+++++    |
T Consensus        80 d~~p~k~~i~~ns~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~k~r~~----~~~~~~~~~Yp~lQaaD~l~l~~~~~~~  155 (273)
T cd00395          80 FEDPTQATLFNNSDWPGPLAHIQFLRDLGKHVYVNYMERKTSFQSRSE----EGISATEFTYPPLQAADFLLLNTTEGCD  155 (273)
T ss_pred             cCCCcceEEEEccccCCcccHHHHHHHHHccCcHHHHHhChHHHHHhc----CCCCchhhhhHHHHHHHHHHHhcccCCc
Confidence            9  9999999999998   89999999999999999999999998752    57899999999999999999987    9


Q ss_pred             EEEecCcchHHHHHHHHHHHHhhh---hhCCCc-------ccccCCCCC-cee
Q 024523          219 FVPVGEDQKQHLELTRELAERVNY---LYGGRK-------WKKLGGRGG-AIF  260 (266)
Q Consensus       219 lvpvG~DQ~~hleLaRdiA~r~n~---~yg~~~-------~~k~g~~~~-~if  260 (266)
                      +||||.||++|++++||+|+|+|.   -+|...       |+|||||.+ .++
T Consensus       156 ~vp~G~DQ~~~i~l~rdla~r~n~~~~p~~l~~p~l~~l~G~KMSKS~~~~i~  208 (273)
T cd00395         156 IQPGGSDQWGNITLGRELARRFNGFTIAEGLTIPLVTKLDGPKFGKSESGPKW  208 (273)
T ss_pred             EEEecHHHHHHHHHHHHHHHHhCCCCCCeEEeeccccCCCCCcCCCCCCCCcc
Confidence            999999999999999999999982   123221       689999987 554

Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.

>PTZ00126 tyrosyl-tRNA synthetase; Provisional

Probab=100.00  E-value=2.2e-45  Score=351.36  Aligned_cols=183  Identities=20%  Similarity=0.308  Sum_probs=157.2

Q ss_pred             CCCceEEEecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeec-C--CCHHHHHHHHHHHHHHHHHcCcCCCc
Q 024523           76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P--YDTQQLSKATRETAAIYLACGIDNSK  151 (266)
Q Consensus        76 ~~~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~-~--~~~e~ir~~~~~~~~~~lA~GlDp~K  151 (266)
                      ++++++|+|++|||++||||.+.-+.+|++||+ |++++|+||||||+++ +  .+++++++++++++++|+|+|+||+|
T Consensus        64 ~~~~~v~~G~~PTG~lHLG~g~i~~~~~~~lq~~G~~v~~~IaD~hA~~~~~~g~~l~~i~~~~~~~~~~~~A~GlDp~k  143 (383)
T PTZ00126         64 KERPICYDGFEPSGRMHIAQGILKAINVNKLTKAGCVFVFWVADWFALLNNKMGGDLEKIRKVGEYFIEVWKAAGMDMDN  143 (383)
T ss_pred             CCCCEEEEEECCCCcccccchHhHhHHHHHHHhCCCeEEEEEccceeecCCCCCCCHHHHHHHHHHHHHHHHHhCCCccc
Confidence            467899999999999999994322238999999 9999999999999998 4  58999999999999999999999999


Q ss_pred             eEEEEccc-chhhhHHHHHHhc----cCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEecCcc
Q 024523          152 ASVFVQSH-VRAHVELMWLLSS----ATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQ  226 (266)
Q Consensus       152 t~if~qSd-~~~~~eL~w~Ls~----~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ  226 (266)
                      ++||+||+ +++|.+++|++.+    .++++|++|+.+++++..   .++.++|+|+||+||||||+++++|+||||+||
T Consensus       144 ~~i~~qS~~v~~~~~l~w~~~~~la~~~tl~r~~r~~~~~~r~~---~~~~~~g~l~YP~LQaaDil~l~adivpvG~DQ  220 (383)
T PTZ00126        144 VRFLWASEEINKNPNDYWLRVMDIARSFNITRIKRCSQIMGRSE---GDEQPCAQILYPCMQCADIFYLKADICQLGMDQ  220 (383)
T ss_pred             eEEEECChhhhhhhHHHHHHHHHHhccCCHHHHHhhhhhhcccc---CCCCCchhhhhhHHHhhhhhccCCCEEEeCccH
Confidence            99999998 6789999998655    469999999998765422   256799999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhhhhhC-----------C-CcccccCCCCC--ceec
Q 024523          227 KQHLELTRELAERVNYLYG-----------G-RKWKKLGGRGG--AIFK  261 (266)
Q Consensus       227 ~~hleLaRdiA~r~n~~yg-----------~-~~~~k~g~~~~--~if~  261 (266)
                      ++|++|+||+|++||+.+.           . +-.+||.||..  +||-
T Consensus       221 ~~~~~LaRdia~~~~~~~~~~~~~~~~lpgL~dg~~KMSKS~~ns~I~L  269 (383)
T PTZ00126        221 RKVNMLAREYCDKKKIKKKPIILSHHMLPGLLEGQEKMSKSDPNSAIFM  269 (383)
T ss_pred             HHHHHHHHHHHHHhCCCCCceeecccccccCCCCCCCCCcCCCCCeecC
Confidence            9999999999999997542           1 11369999863  5663

>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase

Probab=100.00  E-value=2.2e-45  Score=336.23  Aligned_cols=176  Identities=23%  Similarity=0.291  Sum_probs=157.8

Q ss_pred             ceEEEecCCCC-cchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeec-C---------CCHHHHHHHHHHHHHHHHHcC
Q 024523           79 KRIVSGVQPTG-SIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P---------YDTQQLSKATRETAAIYLACG  146 (266)
Q Consensus        79 ~~iytGi~PTG-~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~-~---------~~~e~ir~~~~~~~~~~lA~G  146 (266)
                      .++|+||+||| .+|||||++++ +|++||+ |++++++|||+||+++ |         .+++++++++++++++|+|+|
T Consensus         1 ~~iy~G~~PTg~~lHLG~~~~~~-~~~~lq~~g~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~i~~~~~~~~~~~~a~g   79 (269)
T cd00805           1 LKVYIGFDPTAPSLHLGHLVPLM-KLRDFQQAGHEVIVLIGDATAMIGDPSGKSEERKLLDLELIRENAKYYKKQLKAIL   79 (269)
T ss_pred             CeEEEeeCCCCCcccHHHHHHHH-HHHHHHHCCCeEEEEECCCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHHHHH
Confidence            37999999999 79999999875 9999999 9999999999999998 6         589999999999999999999


Q ss_pred             cC--CCceEEEEcccchhhhHHHHH----HhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEE
Q 024523          147 ID--NSKASVFVQSHVRAHVELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFV  220 (266)
Q Consensus       147 lD--p~Kt~if~qSd~~~~~eL~w~----Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlv  220 (266)
                      +|  |+|++||+||+|+++  ++|+    +++.+++++|.|+.+|+++...  .+++++|+|+||+||||||+++++|+|
T Consensus        80 ~~~~p~k~~i~~~s~~~~~--l~~~~~l~l~~~~~~~~l~~~~~~k~r~~~--~~~~~~~~~~YP~lQaaDi~~l~~~l~  155 (269)
T cd00805          80 DFIPPEKAKFVNNSDWLLS--LYTLDFLRLGKHFTVNRMLRRDAVKVRLEE--EEGISFSEFIYPLLQAYDFVYLDVDLQ  155 (269)
T ss_pred             ccCCCcceEEEEchHhhcc--CCHHHHHHHHhhCcHHHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHhhHHHHhCCee
Confidence            97  999999999999887  5666    9999999999999999887542  367899999999999999999999999


Q ss_pred             EecCcchHHHHHHHHHHHHhhhhh--CCCc-------ccccCCCCC-ce
Q 024523          221 PVGEDQKQHLELTRELAERVNYLY--GGRK-------WKKLGGRGG-AI  259 (266)
Q Consensus       221 pvG~DQ~~hleLaRdiA~r~n~~y--g~~~-------~~k~g~~~~-~i  259 (266)
                      |||.||++|++++||+|+|||+..  +...       |+|||||.+ ++
T Consensus       156 ~~G~DQ~~~i~~~rd~a~r~~~~~~~~l~~~ll~~l~G~KMSKS~~~~~  204 (269)
T cd00805         156 LGGSDQRGNITLGRDLIRKLGYKKVVGLTTPLLTGLDGGKMSKSEGNAI  204 (269)
T ss_pred             EecHHHHHHHHHHHHHHHHhCCCCcEEEeeccccCCCCCcccCCCCCcc
Confidence            999999999999999999997532  1110       689999887 65

Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.

>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6

Probab=100.00  E-value=7e-45  Score=334.26  Aligned_cols=186  Identities=35%  Similarity=0.576  Sum_probs=165.2

Q ss_pred             CCCCceEEEecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCC---CHHHHHHHHHHHHHH--HHHcCcC
Q 024523           75 SSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY---DTQQLSKATRETAAI--YLACGID  148 (266)
Q Consensus        75 ~~~~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~---~~e~ir~~~~~~~~~--~lA~GlD  148 (266)
                      ..+++++|+|++|||.|||||+++ +.+|++||+ |++++|+|||+||++++.   +++.++++++++++.  ++|+|+|
T Consensus         2 ~~~~~~~y~G~~PTg~lHlG~l~~-~~~~~~lq~~g~~~~i~iaD~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~g~d   80 (292)
T PF00579_consen    2 ENKPFRVYTGIDPTGDLHLGHLVP-IMKLIWLQKAGFKVIILIADLHALLGDPSKGDERKIRSRAEYNINDKAILALGLD   80 (292)
T ss_dssp             THSSEEEEEEEESSSS-BHHHHHH-HHHHHHHHHTTSEEEEEEEHHHHHHTTTTGSSHHHHHHHHHHHHHHHHHHHTTSH
T ss_pred             CCCCcEEEEeECCCCcccchHHHH-HHHHHHHHhcCCccceEecchhhcccCcccccHHHHHHHHHHHHHHHHHHHhccC
Confidence            457899999999999999997775 469999997 999999999999999943   599999999999999  9999999


Q ss_pred             CCceEEEEcccchhhhHHHHHHhccCCHHHHhchhhHHHhhhhcC-CCCccchhhhchHHHHHhhhhcCCCEEEecCcch
Q 024523          149 NSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQK  227 (266)
Q Consensus       149 p~Kt~if~qSd~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g-~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ~  227 (266)
                      |+|++||+||+|.++.++.|++.+..+..+++|+++++++.++.+ ++++++|+|+||+|||||++++++|+||||.||+
T Consensus        81 ~~k~~i~~~s~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Yp~lQaaD~~~l~~~~~~~G~DQ~  160 (292)
T PF00579_consen   81 PEKTEIFRQSDWPEHMELWWFLSDVARLFSLNRMLRFKDVKKRLKNGEGISLGEFSYPLLQAADILLLKADLVPGGIDQR  160 (292)
T ss_dssp             TTTEEEEEGHHHHCHHHHHHHHHHHHBHHHHHHHHHHHHHHHHHSSTTTSBHHHHHHHHHHHHHHHHTTHSEEEEEGGGH
T ss_pred             ccceEEEeCCCcccccchhhhhcccccccchhhhhhhcccccccccccCcceeeEEcccccccceeeeccccccccchHH
Confidence            999999999999999999999999999999999999999777666 3689999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhCCCc-------------cc-ccCCCCC--ceec
Q 024523          228 QHLELTRELAERVNYLYGGRK-------------WK-KLGGRGG--AIFK  261 (266)
Q Consensus       228 ~hleLaRdiA~r~n~~yg~~~-------------~~-k~g~~~~--~if~  261 (266)
                      +|++++||+|+|+|++.....             |. ||+||.+  +||-
T Consensus       161 ~~~~l~rd~a~k~~~~~~~~~p~~l~~~~l~~l~G~~KMSKS~~ns~I~L  210 (292)
T PF00579_consen  161 GHIELARDLARKFNYKEIFPKPAGLTSPLLPGLDGQKKMSKSDPNSAIFL  210 (292)
T ss_dssp             HHHHHHHHHHHHHTHHSTSSS-EEEEETCBBSTTSSSBTTTTTTGGS-BT
T ss_pred             HHHHHHHHHHhhhcccccccCchheeeccccccCCccccCccCCccEEEE
Confidence            999999999999999811110             55 9999887  4553

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....

>PTZ00348 tyrosyl-tRNA synthetase; Provisional

Probab=100.00  E-value=7.8e-42  Score=345.46  Aligned_cols=184  Identities=22%  Similarity=0.348  Sum_probs=157.2

Q ss_pred             CCCceEEEecCCCCcchhhh-HHHHHHHHHHHhccCcEEEEEecceeeecC---CCHHHHHHHHHHHHHHHHHcCcCCCc
Q 024523           76 SVKKRIVSGVQPTGSIHLGN-YLGAIKNWIALQNSYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSK  151 (266)
Q Consensus        76 ~~~~~iytGi~PTG~lHLGh-~ig~i~k~~~LQ~g~~v~ilIADlhA~~~~---~~~e~ir~~~~~~~~~~lA~GlDp~K  151 (266)
                      ++++++|+|++|||+||||| ++++++.|..+|+|++++|+||||||+|++   .++++++.++++++++|+|+|+||+|
T Consensus        30 ~~~~rv~sGi~PTG~lHLGng~~~aik~~~~~q~g~~~~~lIAD~HAlt~~~~~~~l~~i~~~~~~~~~~~lA~GlDpeK  109 (682)
T PTZ00348         30 KPLIRCYDGFEPSGRMHIAQGIFKAVNVNKCTQAGCEFVFWVADWFALMNDKVGGELEKIRIVGRYLIEVWKAAGMDMDK  109 (682)
T ss_pred             CCCCEEEEeeCCCCcCeeccHHHHHHHHHHHHhCCCeEEEEEcchhhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCCccc
Confidence            45789999999999999999 466777777778899999999999999984   38899999999999999999999999


Q ss_pred             eEEEEccc-chhhhHHHHHHhccCCHHHHhchhhHHHhhhhcC--CCCccchhhhchHHHHHhhhhcCCCEEEecCcchH
Q 024523          152 ASVFVQSH-VRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG--GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQ  228 (266)
Q Consensus       152 t~if~qSd-~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g--~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ~~  228 (266)
                      ++||+||+ +++|.+++|++  .++++++.++.++|+....++  ++++++|+++||+|||||||++++|+||||+||+|
T Consensus       110 ~~~~~qSd~i~e~~el~w~l--v~~v~~l~t~~q~K~~~~~~g~~~~~i~~gll~YPvLQAADIl~l~adivpvG~DQ~q  187 (682)
T PTZ00348        110 VLFLWSSEEITNHANTYWRT--VLDIGRQNTIARIKKCCTIMGKTEGTLTAAQVLYPLMQCADIFFLKADICQLGLDQRK  187 (682)
T ss_pred             eEEEECcHhhhhhhHHHHHH--HHHHHHHhhHHHHHHHHHhhcccCCCCchHHHhhhHHHhhcccccCCCEEEeCccHHH
Confidence            99999998 78899999998  467888888888877543222  23589999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhCCC------------cccccCCCC--Cceec
Q 024523          229 HLELTRELAERVNYLYGGR------------KWKKLGGRG--GAIFK  261 (266)
Q Consensus       229 hleLaRdiA~r~n~~yg~~------------~~~k~g~~~--~~if~  261 (266)
                      |++|+||+|++||+.+..-            -.+||.||.  ++||-
T Consensus       188 h~eLaRdia~~~g~~~kpvil~~~~LpGL~gg~~KMSKS~p~naI~L  234 (682)
T PTZ00348        188 VNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFM  234 (682)
T ss_pred             HHHHHHHHHHHhCCCCCceecccccCcCCCCCCCcCCCCCCCCeecc
Confidence            9999999999999655311            126999986  36663

>PRK05912 tyrosyl-tRNA synthetase; Validated

Probab=100.00  E-value=1.7e-41  Score=326.91  Aligned_cols=184  Identities=21%  Similarity=0.287  Sum_probs=159.4

Q ss_pred             CCCceEEEecCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEecceeeec-CC---------CHHHHHHHHHHHHHHHH
Q 024523           76 SVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYL  143 (266)
Q Consensus        76 ~~~~~iytGi~PTG~-lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~-~~---------~~e~ir~~~~~~~~~~l  143 (266)
                      .+++++|+||+|||+ |||||+++ +.+|++||+ |++++++|||+||+++ |.         +.+++++|+.++. ..+
T Consensus        31 ~~~~~vy~G~dPTg~slHlGhlv~-l~~l~~lQ~~G~~~~~ligd~ta~igDpsgk~~~r~~l~~e~i~~n~~~i~-~ql  108 (408)
T PRK05912         31 KEPLRIYLGFDPTAPSLHLGHLVP-LLKLRRFQDAGHKPIALIGGFTGMIGDPSGKSETRKLLTREQVAENAETIK-EQL  108 (408)
T ss_pred             CCCCEEEEeecCCCCCccHHhHHH-HHHHHHHHHCCCcEEEEEcCceeEcCCCCCCchhhccCCHHHHHHHHHHHH-HHH
Confidence            368899999999996 99999996 469999999 8999999999999998 52         5678899987764 455


Q ss_pred             HcCcCCCc--eEEEEcccchhhhHHHHHHh---ccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhc---
Q 024523          144 ACGIDNSK--ASVFVQSHVRAHVELMWLLS---SATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY---  215 (266)
Q Consensus       144 A~GlDp~K--t~if~qSd~~~~~eL~w~Ls---~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l---  215 (266)
                      ++|+||++  ++||+||+|.++.++.|++.   +.+++++|.++.+||.+...  ++++++|+|+||+|||||++++   
T Consensus       109 ~~~ld~~k~~~~i~~nsd~~~~~~~~~~l~~v~~~~~v~~m~~~~~~k~r~~~--~~~is~~ef~Yp~LQa~D~l~l~~~  186 (408)
T PRK05912        109 FKFLDFEKDGAEIVNNSDWLGKLNAIDFLRDLGKHFTVNRMLERDDFKKRLRE--GQGISFTEFLYPLLQGYDFVALNKR  186 (408)
T ss_pred             HHhcCcCcCcEEEEECCCcCCcccHHHHHHHHhhhccHHHHhhcchHHHHhcc--CCCCchhhhhhHHHHHhhHHHHhcc
Confidence            99999999  99999999999999998876   89999998888888765432  2679999999999999999999   


Q ss_pred             -CCCEEEecCcchHHHHHHHHHHHHhh--hhhCCCc-------ccccCCCCC-ceeccC
Q 024523          216 -QSDFVPVGEDQKQHLELTRELAERVN--YLYGGRK-------WKKLGGRGG-AIFKVD  263 (266)
Q Consensus       216 -~adlvpvG~DQ~~hleLaRdiA~r~n--~~yg~~~-------~~k~g~~~~-~if~~p  263 (266)
                       ++|++|||.||++|++++||+|+|+|  ..||...       |+|||||.+ +||-.+
T Consensus       187 ~~~~i~~gG~DQ~~ni~~grdla~r~~~~~~~~l~~plL~~~~G~KMsKS~~naI~L~d  245 (408)
T PRK05912        187 YGCDLQLGGSDQWGNILSGRDLQRRYGGKPQFGLTMPLLTGLDGKKMGKSEGNAVWLDE  245 (408)
T ss_pred             CCCCEEeccHHHHHHHHHHHHHHHHhCCCCeEEEecCCcCCCCCCcccCCCCCceeCCC
Confidence             99999999999999999999999998  3455432       689999987 888544

>TIGR00234 tyrS tyrosyl-tRNA synthetase

Probab=100.00  E-value=2.7e-40  Score=315.80  Aligned_cols=180  Identities=22%  Similarity=0.282  Sum_probs=155.8

Q ss_pred             CceEEEecCCCC-cchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeec-CC---------CHHHHHHHHHHHHHHHHHc
Q 024523           78 KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYLAC  145 (266)
Q Consensus        78 ~~~iytGi~PTG-~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~-~~---------~~e~ir~~~~~~~~~~lA~  145 (266)
                      ++++|+||+||| .|||||++++ .+|++||+ |++++++|||+||+++ |.         +.+++++|+ ++++.++|+
T Consensus        30 ~~~vy~G~dPTg~~lHlGh~v~l-~~l~~lq~~G~~~~iligd~ta~igdpsg~~~~R~~~~~~~i~~n~-~~i~~~la~  107 (377)
T TIGR00234        30 KIKLYVGFDPTAPSLHLGHLVPL-LKLRDFQQAGHEVIVLLGDATALIGDPSGKSEERKLLTREEVQENA-ENIKKQIAR  107 (377)
T ss_pred             CCEEEEeeCCCCCCccHHHHHHH-HHHHHHHHCCCcEEEEEeccchhhcCCCChHHHhhcCCHHHHHHHH-HHHHHHHHH
Confidence            789999999999 6999999975 58999999 9999999999999998 53         455666666 678889999


Q ss_pred             CcCCCceEEEEcccchh---hhHHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEe
Q 024523          146 GIDNSKASVFVQSHVRA---HVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPV  222 (266)
Q Consensus       146 GlDp~Kt~if~qSd~~~---~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpv  222 (266)
                      |+||+|++|++||+|..   ++++.+.+++.+++++|.+..+++.+.   . +++++++|+||+|||||++++++|++||
T Consensus       108 gld~~k~~iv~ns~w~~~~~~~~~l~~~~~~~tv~~m~~~~~~~~R~---~-~~is~~ef~YpllQa~D~~~l~~di~~g  183 (377)
T TIGR00234       108 FLDFEKAKFVNNSEWLLKLNYIDFIRDLGKIFSVNRMLRRDAFSSRL---E-RGISLSEFIYPLLQAYDFVYLNVDLQIG  183 (377)
T ss_pred             hCChhheEEEECchhcCcCCHHHHHHHHhCceEHHHHHcccHHHHHH---h-cCCCchhhhhHHHHHHHHHHHcCCeeEe
Confidence            99999999999999853   778888899999999999999886543   2 4599999999999999999999999999


Q ss_pred             cCcchHHHHHHHHHHHHhhhhh--CCCc-------ccccCCCCC-ceeccC
Q 024523          223 GEDQKQHLELTRELAERVNYLY--GGRK-------WKKLGGRGG-AIFKVD  263 (266)
Q Consensus       223 G~DQ~~hleLaRdiA~r~n~~y--g~~~-------~~k~g~~~~-~if~~p  263 (266)
                      |.||++|++++||+|++++.+.  |.+.       ++||||+++ +|+.-|
T Consensus       184 G~DQ~~ni~~g~dLar~~~~~~~~~~t~pLl~~~dg~KmgKS~~~~i~l~~  234 (377)
T TIGR00234       184 GSDQWGNIRKGRDLIRRNLPSLGFGLTVPLLTPADGEKMGKSGGGAVSLDE  234 (377)
T ss_pred             cchhHHHHHHHHHHHHHhcCCCceeeceeeecCCCCCCccCCCCCcccCCc
Confidence            9999999999999999998643  3332       589999975 776544

This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.

>PRK13354 tyrosyl-tRNA synthetase; Provisional

Probab=100.00  E-value=9.3e-40  Score=315.11  Aligned_cols=184  Identities=17%  Similarity=0.260  Sum_probs=155.2

Q ss_pred             CCCceEEEecCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEecceeeec-C---------CCHHHHHHHHHHHHHHHH
Q 024523           76 SVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P---------YDTQQLSKATRETAAIYL  143 (266)
Q Consensus        76 ~~~~~iytGi~PTG~-lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~-~---------~~~e~ir~~~~~~~~~~l  143 (266)
                      .+++++|+|++|||. |||||++++ .+|++||+ |++++++|||+||+++ |         .+.+++++|+.++.+++.
T Consensus        31 ~~~~~iy~G~dPT~~sLHlGhlv~l-~~l~~lq~~G~~~~~ligd~ta~igDpsgk~~~R~~l~~e~i~~n~~~i~~q~~  109 (410)
T PRK13354         31 GKPLTLYLGFDPTAPSLHIGHLVPL-MKLKRFQDAGHRPVILIGGFTGKIGDPSGKSKERKLLTDEQVQHNAKTYTEQIF  109 (410)
T ss_pred             CCCcEEEEcccCCCCCcchhhHHHH-HHHHHHHHcCCeEEEEEcccccccCCCCcccccccCCCHHHHHHHHHHHHHHHH
Confidence            568999999999996 999998875 58999999 8999999999999997 4         256789999998888877


Q ss_pred             HcCcCCCceEEEEcccchhhhHHHHHH---hccCCHHHHhchhhHHHhhhhcC-CCCccchhhhchHHHHHhhhhc----
Q 024523          144 ACGIDNSKASVFVQSHVRAHVELMWLL---SSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLY----  215 (266)
Q Consensus       144 A~GlDp~Kt~if~qSd~~~~~eL~w~L---s~~~tv~rL~R~~~~ke~~~~~g-~~~i~~g~l~YPvLQAADIl~l----  215 (266)
                      + |+||+|++|++||+|.++.++.|++   +..++++   ||++++++..+++ ++++++++|+||+|||||++++    
T Consensus       110 ~-~ld~~k~~i~~ns~w~~~~~~~~~l~~v~~~~tv~---~m~~~~~~~~R~~~~~~is~~ef~YpllQa~D~~~l~~~~  185 (410)
T PRK13354        110 K-LFDFEKTEIVNNSDWLSKLNLIDFLRDYGKHFTVN---RMLERDDVKSRLEREQGISFTEFFYPLLQAYDFVHLNRKE  185 (410)
T ss_pred             H-hcCccceEEEECccccccccHHHHHHHHHhhccHH---HHHhchHHHhhhccCCCCchhhhccHHHHhhhHHHHhccC
Confidence            6 8999999999999998877777765   4555555   6666666555553 3678999999999999999999    


Q ss_pred             CCCEEEecCcchHHHHHHHHHHHHhhhhh--CCCc-------ccccCCCCC-ceeccCC
Q 024523          216 QSDFVPVGEDQKQHLELTRELAERVNYLY--GGRK-------WKKLGGRGG-AIFKVDS  264 (266)
Q Consensus       216 ~adlvpvG~DQ~~hleLaRdiA~r~n~~y--g~~~-------~~k~g~~~~-~if~~p~  264 (266)
                      ++|++|||.||++|++++||+++|+|.++  |...       |+|||||.+ +||--++
T Consensus       186 ~~~iq~gG~DQ~~ni~~grdl~~r~~~~~~~~lt~PlL~g~dG~KMsKS~~naI~L~d~  244 (410)
T PRK13354        186 DVDLQIGGTDQWGNILMGRDLQRKLEGEEQFGLTMPLLEGADGTKMGKSAGGAIWLDPE  244 (410)
T ss_pred             CCCEEEecHHHHHHHHHHHHHHHHhCCCCceEeccCCccCCCCCccCCCCCCceeccCC
Confidence            99999999999999999999999998764  3222       679999988 8885543

>PLN02486 aminoacyl-tRNA ligase

Probab=100.00  E-value=1.1e-38  Score=305.18  Aligned_cols=178  Identities=18%  Similarity=0.281  Sum_probs=146.5

Q ss_pred             CCCceEEEecCCCCc-chhhhHHHHHHHHHHHhc--cCcEEEEEecceeeecC-CCHHHHHHHHHHHHHHHHHcCcCCCc
Q 024523           76 SVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN--SYETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNSK  151 (266)
Q Consensus        76 ~~~~~iytGi~PTG~-lHLGh~ig~i~k~~~LQ~--g~~v~ilIADlhA~~~~-~~~e~ir~~~~~~~~~~lA~GlDp~K  151 (266)
                      ++++++|+|++|||. |||||+++++ +.++||+  ++.++|+|||+|+++.+ .++|++++++++|+++|+|+||||+|
T Consensus        71 ~~~~~vYtG~~PSg~~lHlGHlv~~~-~~~~lQ~~~~~~~~I~iaD~e~~~~~~~~~e~i~~~~~en~~~iiA~G~dp~k  149 (383)
T PLN02486         71 GEKFYLYTGRGPSSEALHLGHLIPFM-FTKYLQDAFKVPLVIQLTDDEKFLWKNLSVEESQRLARENAKDIIACGFDVER  149 (383)
T ss_pred             CCCeEEEeCCCCCCccccHHHHHHHH-HHHHHHHhCCCeEEEEecCHHHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCcc
Confidence            568999999999995 9999999987 5556998  57899999999999984 59999999999999999999999999


Q ss_pred             eEEEEcccchhhhHHHHHHhccCCHHHHhchhhHHHhhhhcC-CCCccchhhhchHHHHHhhhh------cCC-----CE
Q 024523          152 ASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL------YQS-----DF  219 (266)
Q Consensus       152 t~if~qSd~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g-~~~i~~g~l~YPvLQAADIl~------l~a-----dl  219 (266)
                      ++||.|++|.  .+++|...     -++.|+.+++++.+.+| +++.++|+++||+|||||||+      ++.     |+
T Consensus       150 t~I~s~~~~~--~~~~~~~~-----~~l~r~~t~~~~~~~~gf~~~~~ig~~~YP~lQaadi~~~~~~~l~~~~~~~~~l  222 (383)
T PLN02486        150 TFIFSDFDYV--GGAFYKNM-----VKIAKCVTLNQVRGIFGFSGEDNIGKISFPAVQAAPSFPSSFPHLFGGKDKLRCL  222 (383)
T ss_pred             eEEEeccHHH--hHhHHHHH-----HHHHhhCcHHHHHHhhCcCCCCCchhhhhHHHHHhhhhhhccHHHhCCCcCCcce
Confidence            9999777763  34444332     25678888888887776 567899999999999999983      444     99


Q ss_pred             EEecCcchHHHHHHHHHHHHhhhhh----------CCC-cccccCCCCC--ceec
Q 024523          220 VPVGEDQKQHLELTRELAERVNYLY----------GGR-KWKKLGGRGG--AIFK  261 (266)
Q Consensus       220 vpvG~DQ~~hleLaRdiA~r~n~~y----------g~~-~~~k~g~~~~--~if~  261 (266)
                      ||||+||+||++||||+|+|||+.-          |.. ..+||+||.+  +||-
T Consensus       223 VPvG~DQd~~~~ltRdia~r~~~~kp~~~~~~~lp~L~g~~~KMSkS~~nsaI~L  277 (383)
T PLN02486        223 IPCAIDQDPYFRMTRDVAPRLGYYKPALIESRFFPALQGESGKMSASDPNSAIYV  277 (383)
T ss_pred             eecccchHHHHHHHHHHHHHhCCCCcceeccccccCCCCCCCcCcCcCCCCeeec
Confidence            9999999999999999999998621          110 0269999875  5774

>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=5.9e-34  Score=273.62  Aligned_cols=185  Identities=22%  Similarity=0.279  Sum_probs=151.9

Q ss_pred             CceEEEecCCCC-cchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeec-C-CCHHHHHHHHH----HHHHHHH-HcCcC
Q 024523           78 KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P-YDTQQLSKATR----ETAAIYL-ACGID  148 (266)
Q Consensus        78 ~~~iytGi~PTG-~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~-~-~~~e~ir~~~~----~~~~~~l-A~GlD  148 (266)
                      +.++|+||+||| .+||||++++ .++++||+ ||+++++|||+||+++ | ++.++.+..++    +|++.+. ++|.+
T Consensus        32 ~~~~Y~GfDPTa~slHlGhlv~l-~kL~~fQ~aGh~~ivLigd~ta~IgDpsGk~e~r~~l~~e~v~~n~~~i~~ql~~~  110 (401)
T COG0162          32 PLRVYIGFDPTAPSLHLGHLVPL-MKLRRFQDAGHKPIVLIGDATAMIGDPSGKSEERKLLTRETVLENAETIKKQLGKF  110 (401)
T ss_pred             CceEEEeeCCCCCccchhhHHHH-HHHHHHHHCCCeEEEEecccceecCCCCCCHHHHhhccHHHHHHHHHHHHHHhccc
Confidence            899999999999 5999999976 49999999 9999999999999999 6 45666665554    4444444 45766


Q ss_pred             CC-ceEEEEcccchh---hhHHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEecC
Q 024523          149 NS-KASVFVQSHVRA---HVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGE  224 (266)
Q Consensus       149 p~-Kt~if~qSd~~~---~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpvG~  224 (266)
                      ++ |++|.+||+|.+   +++....++..+||+|+.+..+++.+...  +.++++.+|+||+|||+|+++++.|++.||.
T Consensus       111 ld~k~~~v~ns~w~~~~~y~~~l~~~g~~~sv~rml~~d~~~~R~~~--~~~is~~Ef~YpLmQayD~~~L~~dlq~GG~  188 (401)
T COG0162         111 LDNKAEFVNNSDWLKKLNYLDFLRDVGKHFSVNRMLRRDDVKKRLER--EQGISFTEFNYPLLQAYDFVYLNKDLQLGGS  188 (401)
T ss_pred             CCcceEEEechHHhCcCCHHHHHHHHHhHccHHHHHHhhhHHHHhcc--CCCCchhhhhhHHHHHHHHHHHccchhcCCh
Confidence            66 999999999954   66666667899999998888886554322  3579999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHHhhh--hhCCCc-------ccccCCCCC-ceeccCCC
Q 024523          225 DQKQHLELTRELAERVNY--LYGGRK-------WKKLGGRGG-AIFKVDSL  265 (266)
Q Consensus       225 DQ~~hleLaRdiA~r~n~--~yg~~~-------~~k~g~~~~-~if~~p~~  265 (266)
                      |||.++.++||+++|+++  .||.+.       |+||||+++ +++-.|+.
T Consensus       189 DQ~~ni~~grdl~rr~g~~~~~~lt~PLL~~ldG~KmgKs~~~a~~~~s~~  239 (401)
T COG0162         189 DQWGNILAGRDLIRRLGQKKVVGLTTPLLTGLDGKKMGKSEGGAVWLDSEK  239 (401)
T ss_pred             HHHHHHHHHHHHHHHhCCCCeEEEEeccccCCCCCcccccCCCceEccCCC
Confidence            999999999999999886  223222       789999999 68866653

>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=99.95  E-value=3.1e-29  Score=230.78  Aligned_cols=160  Identities=20%  Similarity=0.340  Sum_probs=140.1

Q ss_pred             CCCceEEEecCCCCc-chhhhHHHHH-HHHHHHhccCc--EEEEEecceeeecC-CCHHHHHHHHHHHHHHHHHcCcCCC
Q 024523           76 SVKKRIVSGVQPTGS-IHLGNYLGAI-KNWIALQNSYE--TLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNS  150 (266)
Q Consensus        76 ~~~~~iytGi~PTG~-lHLGh~ig~i-~k~~~LQ~g~~--v~ilIADlhA~~~~-~~~e~ir~~~~~~~~~~lA~GlDp~  150 (266)
                      ++|+++|||++||+. |||||.||+| .||  ||+.|+  .+|.++|+++++++ -..|+..+.+++|+++++|+|+||+
T Consensus        83 ~kpFyLYTGRGpSS~smHlGHliPFiftKw--lQe~F~vpLVIqlTDDEKflwK~l~~eda~~~arENaKDIia~GFDp~  160 (397)
T KOG2145|consen   83 GKPFYLYTGRGPSSESMHLGHLIPFIFTKW--LQDVFDVPLVIQLTDDEKFLWKDLTLEDAKKYARENAKDIIAVGFDPK  160 (397)
T ss_pred             CCceEEEeCCCCCccccccccchhHHHHHH--HHHHhCCceEEEecccHHHHHhhCcHHHHHHHHHhcccceEEeccCCc
Confidence            579999999999976 9999999998 888  999766  69999999999995 4889999999999999999999999


Q ss_pred             ceEEEEcccchhhhHHHHHHhccCCHHHHhchhhHHHhhhhcC-CCCccchhhhchHHHHHhhhhc-----------CCC
Q 024523          151 KASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLY-----------QSD  218 (266)
Q Consensus       151 Kt~if~qSd~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g-~~~i~~g~l~YPvLQAADIl~l-----------~ad  218 (266)
                      ||+||.+.++..-..   ++   -++-++.+++++++.++.+| +++.++|++.+|..|||..+..           -+|
T Consensus       161 kTfIFsn~~y~g~~~---fy---~nivki~k~vt~nqa~~iFGF~~sd~igk~~Fpa~qaap~fssSFp~if~~~~~~~C  234 (397)
T KOG2145|consen  161 KTFIFSNLDYMGGPA---FY---ENIVKISKCVTLNQAKAIFGFTDSDCIGKIGFPAIQAAPSFSSSFPFIFGGRDDIPC  234 (397)
T ss_pred             ceEEEechhhccCcH---HH---HHHHHHhheechhhheeeeccCCccccccccCchhhhcccccccchhhcCCCcCCce
Confidence            999999999753100   11   23556679999999888888 7889999999999999999974           269


Q ss_pred             EEEecCcchHHHHHHHHHHHHhhhh
Q 024523          219 FVPVGEDQKQHLELTRELAERVNYL  243 (266)
Q Consensus       219 lvpvG~DQ~~hleLaRdiA~r~n~~  243 (266)
                      ++|+.+||+|+++|+||+|+|+++.
T Consensus       235 LiPcAiDQDPyFRmtRDvA~rlg~~  259 (397)
T KOG2145|consen  235 LIPCAIDQDPYFRMTRDVAPRLGYP  259 (397)
T ss_pred             eceeeccCChHHHhhhhhhhhhCCC
Confidence            9999999999999999999999863

>KOG2144 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Translation, ribosomal structure and biogenesis]

Probab=99.93  E-value=3.4e-26  Score=210.45  Aligned_cols=162  Identities=20%  Similarity=0.161  Sum_probs=131.2

Q ss_pred             CCceEEEecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecC--CCHHHHHHHHHHHHHHH-HHc---CcCC
Q 024523           77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP--YDTQQLSKATRETAAIY-LAC---GIDN  149 (266)
Q Consensus        77 ~~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~--~~~e~ir~~~~~~~~~~-lA~---GlDp  149 (266)
                      +.+.+|+|++|||+||+|.+++++ +..+|-+ ||+|.|++|||||++++  ...+.+..++.|+-..+ .|+   +.+.
T Consensus        33 r~l~~YwGtaptGrpHiay~vpm~-kiadflkAGC~VtIl~AD~hA~LdNmkap~e~~~~rv~yYe~~Ik~~l~~~nv~l  111 (360)
T KOG2144|consen   33 RALKCYWGTAPTGRPHIAYFVPMM-KIADFLKAGCEVTILFADLHAFLDNMKAPDELVIRRVGYYEKEIKAALGSINVPL  111 (360)
T ss_pred             cCceeeecCCCCCCcceeeeeehh-HHHHHHhcCCeEEEEehHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhhcCCcH
Confidence            568999999999999999998876 8888888 99999999999999984  34566666665554433 344   4456


Q ss_pred             CceEEEEcccch---hhhHHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEecCcc
Q 024523          150 SKASVFVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQ  226 (266)
Q Consensus       150 ~Kt~if~qSd~~---~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ  226 (266)
                      |+..|.-.|++.   +++-..+++++.++-..+++...  ++.++.  +...++.++||+|||+|++++.+|++.+|+||
T Consensus       112 EkL~fv~gs~yq~sk~ytld~~rl~~~~~~hdak~aga--evvkqv--e~plls~llYP~MQalDe~~L~vD~qfgGvDQ  187 (360)
T KOG2144|consen  112 EKLKFVKGSNYQLSKYYTLDMYRLSSNVTQHDAKKAGA--EVVKQV--ENPLLSGLLYPGMQALDEFYLEVDAQFGGVDQ  187 (360)
T ss_pred             HHHhhhcccccccCccchhhHHHHHhhccHhHHHHhhh--hHHHhh--cchhhhhhhhhhHHHhhHHHHhhhHHhcCccH
Confidence            777777777763   46666778888887777766654  444443  78899999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhhhh
Q 024523          227 KQHLELTRELAERVNYL  243 (266)
Q Consensus       227 ~~hleLaRdiA~r~n~~  243 (266)
                      |+.+.++|++++.+|++
T Consensus       188 RKIf~~A~eylp~l~yk  204 (360)
T KOG2144|consen  188 RKIFVLAEEYLPDLGYK  204 (360)
T ss_pred             HHHHHHHHHhhhhhCcc
Confidence            99999999999999986

>PTZ00348 tyrosyl-tRNA synthetase; Provisional

Probab=99.90  E-value=1.1e-23  Score=213.89  Aligned_cols=121  Identities=12%  Similarity=0.136  Sum_probs=109.4

Q ss_pred             cCcEEEEEecceeeecC---CCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcccch-----hhhHHHHHHhccCCHHHHh
Q 024523          109 SYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVR-----AHVELMWLLSSATPIGWLN  180 (266)
Q Consensus       109 g~~v~ilIADlhA~~~~---~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~qSd~~-----~~~eL~w~Ls~~~tv~rL~  180 (266)
                      |++++|++|||||++|.   ++.++|++.++|+++.|.|+|+|++ ++|+|+||..     +||.+..-+++.++++|++
T Consensus       407 g~~~~illADwhA~lN~k~~G~l~~I~~~~~y~~~~~~a~G~~~~-v~fv~~sd~~~~~~~~Yw~~v~~ia~~~tl~r~~  485 (682)
T PTZ00348        407 DGTVTLVLPDWSAVASDEITGEEKDISAALEVNCALLKAYGLPSE-VKIVRENEVILGNPNDFWVSVIGIARKNLLSHVE  485 (682)
T ss_pred             CCeEEEEeehhHHHhcCccCCCHHHHHHHHHHHHHHHHHcCCCCC-cEEEEchHhhhcCchhHHHHHHHHHHhccHHHHH
Confidence            89999999999999994   6999999999999999999999999 9999999962     3455555579999999999


Q ss_pred             chhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEecCcchHHHHHHHHHHHH
Q 024523          181 KMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAER  239 (266)
Q Consensus       181 R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ~~hleLaRdiA~r  239 (266)
                      |++.         ++..++++++||+||++||+++++|++.+|+|||+.++||||++++
T Consensus       486 r~~g---------~~~~~~s~~iYP~MQ~~Di~~L~~di~~gG~DQRki~mlAre~~~~  535 (682)
T PTZ00348        486 ELYG---------GELRNAGQVIAALMRVATALMLSASHVISTSLDGGINEFAREYTKG  535 (682)
T ss_pred             HHhc---------CCcccHHHHHHHHHHHHHHHhcCCCeeecChhHHHHHHHHHHhccc
Confidence            9762         2556999999999999999999999999999999999999999993

>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=99.87  E-value=1.3e-21  Score=185.94  Aligned_cols=186  Identities=19%  Similarity=0.232  Sum_probs=143.0

Q ss_pred             CceEEEecCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEecceeeec-CC---------CHHHHHHHHHHHHHHHHH-
Q 024523           78 KKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYLA-  144 (266)
Q Consensus        78 ~~~iytGi~PTG~-lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~-~~---------~~e~ir~~~~~~~~~~lA-  144 (266)
                      |.+||.|++||.. +|+||+++.| .+..+|. ||+++-+|++.+|.++ |.         +.+.++.|++.+..++.+ 
T Consensus        63 p~~vYcGfDPTA~SLHvGNLl~lm-~L~hfqr~Gh~~ialIGgATa~vGDPSGrktER~~l~~d~~~~N~~~I~~ql~~i  141 (467)
T KOG2623|consen   63 PQYVYCGFDPTAESLHVGNLLALM-VLIHFQRAGHRPIALIGGATASVGDPSGRKTERGQLAEDTREANSRSITQQLCKI  141 (467)
T ss_pred             CceEEecCCCcHHhhhhcchHHHH-HHHHHHHcCCCceEEeccccccccCCCCCccchhhhhhHHHHHhHHHHHHHHHHH
Confidence            5889999999997 9999999776 8888888 9999999999999998 51         234455666555444443 


Q ss_pred             ---------cCcCCCceEEEEcccchhhhHHHHHHhccCCHHHHhchhhHHHhhhhcC-CCCccchhhhchHHHHHhhhh
Q 024523          145 ---------CGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL  214 (266)
Q Consensus       145 ---------~GlDp~Kt~if~qSd~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g-~~~i~~g~l~YPvLQAADIl~  214 (266)
                               +|..-.+-.|+.|++|-+-..|.=+|+..-.--|+..|+....++.+.. ++..++.+|+|-+|||+|.++
T Consensus       142 f~n~~~~~~~~~s~g~~~ivnN~dW~~d~~llDFLa~vGrh~RvgsMLar~SV~~RLes~~GlSftEFtYQ~lQAYDfy~  221 (467)
T KOG2623|consen  142 FENHPEYYRDGSSQGKYIIVNNSDWYKDIKLLDFLAEVGRHFRVGSMLARDSVKSRLESPNGLSFTEFTYQLLQAYDFYH  221 (467)
T ss_pred             HhcChhhhcCCcccCceeEeechHHhhhchHHHHHHHhchhhhHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHH
Confidence                     2444467899999998654444334443333344556666555666655 578999999999999999998


Q ss_pred             c----CCCEEEecCcchHHHHHHHHHHHHhhh----hhCCCc-------ccccCCCCC-ceeccCC
Q 024523          215 Y----QSDFVPVGEDQKQHLELTRELAERVNY----LYGGRK-------WKKLGGRGG-AIFKVDS  264 (266)
Q Consensus       215 l----~adlvpvG~DQ~~hleLaRdiA~r~n~----~yg~~~-------~~k~g~~~~-~if~~p~  264 (266)
                      +    +++++.+|.||+.|++.+-|+.+|+-.    -||.++       |.|+||++| +||--|.
T Consensus       222 L~~~~g~~~QlGGsDQwGNitaG~dlI~ki~~~~~~vfGlT~PLlTsstG~KlGKSaGnAvWLdp~  287 (467)
T KOG2623|consen  222 LYENYGCRFQLGGSDQWGNITAGTDLIRKIMPIQAFVFGLTFPLLTSSTGAKLGKSAGNAVWLDPS  287 (467)
T ss_pred             HHHhcCeeEEecccccccccchHHHHHHHhcccccceeeeeeeeEecCcchhhccCCCceEEecCc
Confidence            5    799999999999999999999999854    477665       889999999 9996654

>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase

Probab=99.28  E-value=1.6e-11  Score=111.54  Aligned_cols=144  Identities=22%  Similarity=0.192  Sum_probs=105.0

Q ss_pred             CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCce-------EEEEc
Q 024523           86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKA-------SVFVQ  157 (266)
Q Consensus        86 ~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt-------~if~q  157 (266)
                      .|||.|||||+.+++.+|...+. +..+++-|.|    |++.  ....+....+.+++..+||++++.       .+|.|
T Consensus         9 sPtG~LHlG~~~~al~n~l~ar~~~G~~ilRieD----td~~--r~~~~~~~~i~~dL~wlGl~~d~~~~~~g~~~~~~Q   82 (239)
T cd00808           9 SPTGFLHIGGARTALFNYLFARKHGGKFILRIED----TDQE--RSVPEAEEAILEALKWLGLDWDEGPDVGGPYGPYRQ   82 (239)
T ss_pred             CCCCcccHHHHHHHHHHHHHHHHcCCeEEEEECc----CCCC--CCchHHHHHHHHHHHHcCCCCCcCCccCCCCCCEee
Confidence            58899999999999999988877 5556666888    4321  234456677788888899999974       38999


Q ss_pred             ccchhhhHHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEecCcchHHHHHHHHHH
Q 024523          158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA  237 (266)
Q Consensus       158 Sd~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ~~hleLaRdiA  237 (266)
                      |+-.+..+.   .     +   ++.      .. .|     =|..+|++-++.|....+.++|+.|.|+..+....+.++
T Consensus        83 S~r~~~y~~---~-----~---~~L------~~-~g-----dg~ptY~~a~~vDD~~~~ithViRG~D~~~~t~~q~~l~  139 (239)
T cd00808          83 SERLEIYRK---Y-----A---EKL------LE-KG-----DGFPTYHLANVVDDHLMGITHVIRGEEHLSSTPKQILLY  139 (239)
T ss_pred             eCCHHHHHH---H-----H---HHH------HH-cC-----CCCcccccHHHHhHHhcCCCEEEEChhhhhChHHHHHHH
Confidence            984332111   1     0   111      01 12     278999999999999999999999999999999999999


Q ss_pred             HHhhhhh---CC------CcccccCCCCCc
Q 024523          238 ERVNYLY---GG------RKWKKLGGRGGA  258 (266)
Q Consensus       238 ~r~n~~y---g~------~~~~k~g~~~~~  258 (266)
                      +.||...   ..      ..++||-||.+.
T Consensus       140 ~aLg~~~p~~~h~pll~~~~g~KLSKR~~~  169 (239)
T cd00808         140 EALGWEPPKFAHLPLILNPDGKKLSKRKGD  169 (239)
T ss_pred             HHcCCCCCceEeeccccCCCCCcccCCCCC
Confidence            9998532   10      015677777763

Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.

>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase

Probab=99.27  E-value=2.5e-11  Score=100.54  Aligned_cols=38  Identities=39%  Similarity=0.503  Sum_probs=37.3

Q ss_pred             chHHHHHhhhhcCC---CEEEecCcchHHHHHHHHHHHHhh
Q 024523          204 YPVLMASDILLYQS---DFVPVGEDQKQHLELTRELAERVN  241 (266)
Q Consensus       204 YPvLQAADIl~l~a---dlvpvG~DQ~~hleLaRdiA~r~n  241 (266)
                      ||+.|+||++.+..   |++++|.||++|+++.++++++++
T Consensus        78 y~~~~~a~~~~~~~~~~~i~~~G~Dq~~h~~~~~~i~~~~~  118 (143)
T cd00802          78 YMFLQAADFLLLYETECDIHLGGSDQLGHIELGLELLKKAG  118 (143)
T ss_pred             HHHHHHHHHHHHhhCCcEEEEechhHHHHHHHHHHHHHHhC
Confidence            99999999999998   999999999999999999999997

Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.

>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase

Probab=98.02  E-value=4e-05  Score=69.61  Aligned_cols=142  Identities=20%  Similarity=0.169  Sum_probs=94.4

Q ss_pred             CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcccchhhh
Q 024523           86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHV  164 (266)
Q Consensus        86 ~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~qSd~~~~~  164 (266)
                      .|||.|||||...++-+|..-+. +.++++=|=|.= -     .....+....+.+++..+|++.+. .+|+||+..+.-
T Consensus         9 sPtG~lHlG~~r~al~n~l~Ar~~~G~~iLRieDtD-~-----~R~~~~~~~~I~~dL~wlGl~wd~-~~~~QS~r~~~y   81 (230)
T cd00418           9 SPTGYLHIGHARTALFNFAFARKYGGKFILRIEDTD-P-----ERSRPEYVESILEDLKWLGLDWDE-GPYRQSDRFDLY   81 (230)
T ss_pred             CCCCcccHHHHHHHHHHHHHHHHcCCeEEEEeCcCC-C-----CCCChHHHHHHHHHHHHcCCCCCC-CeeehhcCHHHH
Confidence            58899999999988877765444 555555444422 1     112345667788888889999874 278899854321


Q ss_pred             HHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEecCcchHHHHHHHHHHHHhhhhh
Q 024523          165 ELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLY  244 (266)
Q Consensus       165 eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ~~hleLaRdiA~r~n~~y  244 (266)
                      +.   .        +++..       ..|      |..+|=+--+.|=...+.++|.-|.|+..+...-+.+++.+|...
T Consensus        82 ~~---~--------~~~L~-------~~g------g~p~Y~la~vvDD~~~gIThViRG~D~l~st~~q~~l~~~Lg~~~  137 (230)
T cd00418          82 RA---Y--------AEELI-------KKG------GYPLYNFVHPVDDALMGITHVLRGEDHLDNTPIQDWLYEALGWEP  137 (230)
T ss_pred             HH---H--------HHHHH-------HcC------CCccccccccccccccCCCEEEECHhhhhchHHHHHHHHHcCCCC
Confidence            11   0        01111       111      556666666666667799999999999999999999999998632


Q ss_pred             CC---------CcccccCCCCCc
Q 024523          245 GG---------RKWKKLGGRGGA  258 (266)
Q Consensus       245 g~---------~~~~k~g~~~~~  258 (266)
                      -.         ..++||-||.++
T Consensus       138 P~~~H~pll~~~~g~KLSKr~~~  160 (230)
T cd00418         138 PRFYHFPRLLLEDGTKLSKRKLN  160 (230)
T ss_pred             CeEEEeeeeeCCCCCCccCcCCC
Confidence            10         115788887763

Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind

>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase

Probab=97.95  E-value=0.00016  Score=69.43  Aligned_cols=81  Identities=23%  Similarity=0.282  Sum_probs=56.1

Q ss_pred             CceEEEecCCCCcchhhhHHHHH--HHHHHHhc--cCcE-EEEEecceee---------------ec-C---------CC
Q 024523           78 KKRIVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYET-LFFIVDLHAI---------------TL-P---------YD  127 (266)
Q Consensus        78 ~~~iytGi~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v-~ilIADlhA~---------------~~-~---------~~  127 (266)
                      +..|=||+-|||.+||||+...+  .-+.+.++  |+++ +++.+|.|.-               ++ |         ..
T Consensus        20 ~~~v~tgi~psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p~g~~   99 (353)
T cd00674          20 KYVVASGISPSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDPFGCC   99 (353)
T ss_pred             eEEEecCCCCCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhhcCCC
Confidence            56788899999999999987655  23444444  8886 5679999932               11 1         02


Q ss_pred             HHHHHHHHHHHHHHHHHcCcCCCceEEEEcccch
Q 024523          128 TQQLSKATRETAAIYLACGIDNSKASVFVQSHVR  161 (266)
Q Consensus       128 ~e~ir~~~~~~~~~~lA~GlDp~Kt~if~qSd~~  161 (266)
                      ++-+.++...+.+.+..+|++.+   +|.+++..
T Consensus       100 ~~~~d~~~~~f~~~l~~lgi~~d---~~~~T~~y  130 (353)
T cd00674         100 ESYAEHFERPFEESLEKLGIEVE---FISQSQMY  130 (353)
T ss_pred             HHHHHHHHHHHHHHHHHcCCeee---eeecCCch
Confidence            34456666777778888999764   77777753

Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.

>PRK00750 lysK lysyl-tRNA synthetase; Reviewed

Probab=97.69  E-value=0.00045  Score=69.23  Aligned_cols=79  Identities=18%  Similarity=0.251  Sum_probs=51.7

Q ss_pred             ceEEEecCCCCcchhhhHHHHHHH--HHH-Hhc-cCcE-EEEEecceeeec--CC-------------------------
Q 024523           79 KRIVSGVQPTGSIHLGNYLGAIKN--WIA-LQN-SYET-LFFIVDLHAITL--PY-------------------------  126 (266)
Q Consensus        79 ~~iytGi~PTG~lHLGh~ig~i~k--~~~-LQ~-g~~v-~ilIADlhA~~~--~~-------------------------  126 (266)
                      ..+=+|+.|||.+||||+-..+..  +.+ |.. |.++ +++.+|.|.-+.  |.                         
T Consensus        25 ~~~~~g~~psG~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~G~pl~~~p~p~G~  104 (510)
T PRK00750         25 VVVETGIGPSGLPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYLGKPLTEIPDPFGC  104 (510)
T ss_pred             EEEEeCCCCCCCcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCcccccCCCCCchHHHHHhcCcccccCCCCCCC
Confidence            788999999999999998665522  333 344 8886 677899996321  10                         


Q ss_pred             CHHHHHHHHHHHHHHHHHcCcCCCceEEEEcccc
Q 024523          127 DTQQLSKATRETAAIYLACGIDNSKASVFVQSHV  160 (266)
Q Consensus       127 ~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~qSd~  160 (266)
                      ..+-..++.....+.+-.+||+.   ++|.+++.
T Consensus       105 ~~~~~~~~~~~~~~~~~~~gi~~---d~~~~t~~  135 (510)
T PRK00750        105 HESYAEHFNAPLREFLDRFGIEY---EFISATEC  135 (510)
T ss_pred             chHHHHHHHHHHHHHHHHcCCce---EEEehhhh
Confidence            11223444455566666789975   47777764

>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed

Probab=97.63  E-value=0.0001  Score=69.39  Aligned_cols=90  Identities=18%  Similarity=0.233  Sum_probs=63.8

Q ss_pred             CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcccchh-h
Q 024523           86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA-H  163 (266)
Q Consensus        86 ~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~qSd~~~-~  163 (266)
                      .|||.|||||+..++-+|..-+. |.+.++=|-|.    ++  .....+....+.+++..+||+.|. .+|+||+..+ |
T Consensus        13 SPTG~LHlG~~rtAL~n~l~Ar~~~G~~iLRiEDt----D~--~R~~~~~~~~I~~dL~wlGl~wDe-~~~~QS~r~~~Y   85 (299)
T PRK05710         13 SPSGPLHFGSLVAALGSWLDARAHGGRWLLRIEDI----DP--PREVPGAADAILADLEWLGLHWDG-PVLYQSQRHDAY   85 (299)
T ss_pred             CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEECcC----CC--CccchHHHHHHHHHHHHCCCCCCC-CceEeeccHHHH
Confidence            47799999999999988876666 67777777763    22  123445677888899999999885 3677999643 2


Q ss_pred             hHH-------HHHHhccCCHHHHhch
Q 024523          164 VEL-------MWLLSSATPIGWLNKM  182 (266)
Q Consensus       164 ~eL-------~w~Ls~~~tv~rL~R~  182 (266)
                      .+.       .+.+.|.+|-.++++.
T Consensus        86 ~~~~~~L~~~G~aY~C~Ctr~el~~~  111 (299)
T PRK05710         86 RAALDRLRAQGLVYPCFCSRKEIAAA  111 (299)
T ss_pred             HHHHHHHHHCCCceecCCCHHHHHHH
Confidence            111       1236789998888644

>cd02156 nt_trans nucleotidyl transferase superfamily

Probab=97.33  E-value=0.00077  Score=53.05  Aligned_cols=64  Identities=19%  Similarity=0.219  Sum_probs=51.5

Q ss_pred             EEEecCCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcC
Q 024523           81 IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGID  148 (266)
Q Consensus        81 iytGi~PTG~lHLGh~ig~i~k~~~LQ~g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlD  148 (266)
                      +++|-.+ +++|+||+.. ++.+.++++  .+++.++|.++...+.++..++++.+...+..+-+|.+
T Consensus         2 ~~~~G~F-dp~H~GH~~l-~~~a~~~~d--~~i~~i~~~~~~~~~~~~~~~~~R~~~l~~~~~~~G~~   65 (105)
T cd02156           2 ARFPGEP-GYLHIGHAKL-ICRAKGIAD--QCVVRIDDNPPVKVWQDPHELEERKESIEEDISVCGED   65 (105)
T ss_pred             EEeCCCC-CCCCHHHHHH-HHHHHHhCC--cEEEEEcCCCcccccCChHHHHHHHHHHHHHHHHHHhh
Confidence            5667777 8999999985 678877774  68999999999887667778888888777777777875

nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.

>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases

Probab=97.03  E-value=0.0029  Score=56.00  Aligned_cols=152  Identities=16%  Similarity=0.196  Sum_probs=81.4

Q ss_pred             EEecCCCCcchhhhHHHHH--HHHHHHhc--cCcEEE-EEecceee-ecC-----CCHHH-HHHHHHHHHHHHHHcCcCC
Q 024523           82 VSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLF-FIVDLHAI-TLP-----YDTQQ-LSKATRETAAIYLACGIDN  149 (266)
Q Consensus        82 ytGi~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~i-lIADlhA~-~~~-----~~~e~-ir~~~~~~~~~~lA~GlDp  149 (266)
                      |++=-|+|++||||..+.+  .-+.++.+  |++|+. ...|+|.. +..     ..+++ .......+.+++.++|+.+
T Consensus         6 ~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~~~L~i~~   85 (212)
T cd00671           6 FVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLEKWRKLVEESIKADLETYGRLDVRF   85 (212)
T ss_pred             ecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcC
Confidence            6667789999999987754  44555554  888753 34444432 211     11323 3334456778888899876


Q ss_pred             CceEEEEcccchhhhHHHHH-HhccCCHHHHhchhhHHHhh------hhcCC--CCc---cchhhhchH---HHHHhhhh
Q 024523          150 SKASVFVQSHVRAHVELMWL-LSSATPIGWLNKMIQFKEKS------HKAGG--ENV---GVALLTYPV---LMASDILL  214 (266)
Q Consensus       150 ~Kt~if~qSd~~~~~eL~w~-Ls~~~tv~rL~R~~~~ke~~------~~~g~--~~i---~~g~l~YPv---LQAADIl~  214 (266)
                      +  .++.-|+..+.....+. |..        +-..++...      ..+++  +-+   +=|..+|..   --+.|=+.
T Consensus        86 d--~~~~es~~~~~~~~~i~~L~~--------~g~~~~~~g~~~~~~~~~~~~~d~vl~rsdG~~~Y~~~DlA~~~~~~~  155 (212)
T cd00671          86 D--VWFGESSYLGLMGKVVELLEE--------LGLLYEEDGALWLDLTEFGDDKDRVLVRSDGTYTYFTRDIAYHLDKFE  155 (212)
T ss_pred             c--eecchhhhhhHHHHHHHHHHH--------CCCEEEeCCcEEEechhhCCCCCeEEEECCCCccchHHHHHHHHHHHh
Confidence            4  34455553221111111 100        000000000      00000  000   225556652   11122122


Q ss_pred             cCCCEE--EecCcchHHHHHHHHHHHHhhhh
Q 024523          215 YQSDFV--PVGEDQKQHLELTRELAERVNYL  243 (266)
Q Consensus       215 l~adlv--pvG~DQ~~hleLaRdiA~r~n~~  243 (266)
                      .+.|.+  .+|.||..|+.-.+.+++.++..
T Consensus       156 ~~~~~~i~v~g~~~~~~~~~~~~~~~~lg~~  186 (212)
T cd00671         156 RGADKIIYVVGADHHGHFKRLFAALELLGYD  186 (212)
T ss_pred             cCCCEEEEEECCCHHHHHHHHHHHHHHcCCC
Confidence            577887  99999999999999999999864

Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.

>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase

Probab=96.88  E-value=0.0033  Score=57.58  Aligned_cols=149  Identities=13%  Similarity=0.064  Sum_probs=87.1

Q ss_pred             CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcccchh-h
Q 024523           86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA-H  163 (266)
Q Consensus        86 ~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~qSd~~~-~  163 (266)
                      .|||.|||||...++-+|..-+. +.+.++=|=| +   ++  .....+....+.+++..+|++.+  .+++||+..+ |
T Consensus         9 sPtG~lHlG~~~~al~~~l~Ar~~~G~~iLRieD-t---D~--~R~~~~~~~~I~~dL~wlGl~wD--~~~~QS~r~~~Y   80 (238)
T cd00807           9 EPNGYLHIGHAKAILLNFGYAKKYGGRCNLRFDD-T---NP--EKEEEEYVDSIKEDVKWLGIKPY--KVTYASDYFDQL   80 (238)
T ss_pred             CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecC-C---CC--cccchHHHHHHHHHHHHcCCCCC--CceecccCHHHH
Confidence            57899999999988877754443 4454443333 2   11  12344566677888889999998  6889998543 2


Q ss_pred             hHHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHH---hhhhcCCCEEEecCcchHHHHHHHHHHHHh
Q 024523          164 VELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMAS---DILLYQSDFVPVGEDQKQHLELTRELAERV  240 (266)
Q Consensus       164 ~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAA---DIl~l~adlvpvG~DQ~~hleLaRdiA~r~  240 (266)
                      .+..-.|-        ++-..|..  ...+ +    ...+||..|=|   |=...+.+.|.-|.|....-..-.-+.+.+
T Consensus        81 ~~~~~~L~--------~~g~aY~~--~~~~-~----~~~i~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~aL  145 (238)
T cd00807          81 YEYAEQLI--------KKGKAYVH--HRTG-D----KWCIYPTYDFAHPIVDSIEGITHSLCTLEFEDRRPSYYWLCDAL  145 (238)
T ss_pred             HHHHHHHH--------HcCCeecC--CCCC-C----CEEEEeccccceEeeccccCCCeEEechhhhcCCHHHHHHHHHc
Confidence            22211110        00001110  0001 1    11234544433   333458999999999998877777788887


Q ss_pred             hhhh------CC--CcccccCCCCC
Q 024523          241 NYLY------GG--RKWKKLGGRGG  257 (266)
Q Consensus       241 n~~y------g~--~~~~k~g~~~~  257 (266)
                      +...      +.  ..++|+-|+.+
T Consensus       146 g~~~P~~~~~~hln~~g~kLSKR~~  170 (238)
T cd00807         146 RLYRPHQWEFSRLNLTYTVMSKRKL  170 (238)
T ss_pred             CCCCCceeEEEEECCCCCCccCcCc
Confidence            6532      21  11678888775

Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.

>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase

Probab=96.84  E-value=0.0037  Score=57.26  Aligned_cols=139  Identities=19%  Similarity=0.135  Sum_probs=82.1

Q ss_pred             EecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcccch
Q 024523           83 SGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVR  161 (266)
Q Consensus        83 tGi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~qSd~~  161 (266)
                      .|-.|||.+||||...++-+|..-+. +...++=|-|.-.-..    ....+....+.+++..+|++++  +.++||+..
T Consensus         6 faPsPtG~lHiG~~rtal~~~l~Ar~~~G~~ilRieDtD~~r~----~~~~~~~~~i~~dL~wLGl~~d--~~~~qS~r~   79 (240)
T cd09287           6 FAPNPNGPLHLGHARAAILNGEYAKMYGGKFILRFDDTDPRTK----RPDPEAYDMIPEDLEWLGVKWD--EVVIASDRI   79 (240)
T ss_pred             CCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeeCcCCCCcc----cchHHHHHHHHHHHHHcCCCCC--CccchhccH
Confidence            45678899999999988867753333 3444444555421110    1234445568889999999998  588999853


Q ss_pred             h-hhHHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHH---hhhhcCCCEEEecCcchHHHHHHHHHH
Q 024523          162 A-HVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMAS---DILLYQSDFVPVGEDQKQHLELTRELA  237 (266)
Q Consensus       162 ~-~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAA---DIl~l~adlvpvG~DQ~~hleLaRdiA  237 (266)
                      + |.+..-.|-        ++-..|.  ....+ +.    ...||..+=|   |=...+.++|.-|.|-..+-..-.-+.
T Consensus        80 ~~y~~~~~~Li--------~~G~aY~--~~~~~-~~----~~i~ptY~la~vVDD~~~gIThViRg~d~~~~t~~q~~l~  144 (240)
T cd09287          80 ELYYEYARKLI--------EMGGAYV--HPRTG-SK----YRVWPTLNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIY  144 (240)
T ss_pred             HHHHHHHHHHH--------HcCCccc--CcccC-Cc----EEEEEccccceeeeccccCCCeEEechhhhhCCHHHHHHH
Confidence            3 333221110        1111111  01111 11    1234544433   333458999999999999888888888


Q ss_pred             HHhhh
Q 024523          238 ERVNY  242 (266)
Q Consensus       238 ~r~n~  242 (266)
                      +.++.
T Consensus       145 ~~Lg~  149 (240)
T cd09287         145 EYFGW  149 (240)
T ss_pred             HHcCC
Confidence            88875

Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.

>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6

Probab=96.69  E-value=0.0055  Score=57.84  Aligned_cols=166  Identities=20%  Similarity=0.075  Sum_probs=91.4

Q ss_pred             CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcccchhh-
Q 024523           86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAH-  163 (266)
Q Consensus        86 ~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~qSd~~~~-  163 (266)
                      .|||.|||||+..++-+|..-.. |...++=|=| +   ++.  ....+....+.+++.-+||+++ -..|+||+-.+. 
T Consensus         9 sPtG~lHiG~~r~al~n~~~Ar~~~G~~iLRieD-t---D~~--R~~~~~~~~i~~~L~wlGl~~D-~~~~~QS~r~~~Y   81 (314)
T PF00749_consen    9 SPTGYLHIGHARTALLNYLFARKYGGKFILRIED-T---DPE--RCRPEFYDAILEDLRWLGLEWD-YGPYYQSDRLEIY   81 (314)
T ss_dssp             -SSSS-BHHHHHHHHHHHHHHHHTTSEEEEEEET-S---STT--TCHHHHHHHHHHHHHHHT---S-TCEEEGGGGHHHH
T ss_pred             CCCCCcccchhHHHHHHHHHHhccCceEEEeccc-c---ccc--cchhhHHHHHHhheeEEEEecC-CeEEeHHHHHHHH
Confidence            57899999999998878764444 5455544444 3   211  1234556667778888999987 568889996542 


Q ss_pred             hHHHHH-------HhccCCHHHHhchhhH------------H---------Hhhhh----------cC-CCC-------c
Q 024523          164 VELMWL-------LSSATPIGWLNKMIQF------------K---------EKSHK----------AG-GEN-------V  197 (266)
Q Consensus       164 ~eL~w~-------Ls~~~tv~rL~R~~~~------------k---------e~~~~----------~g-~~~-------i  197 (266)
                      .+..-.       +.|.+|-.+++..-.-            .         ++.+.          +. +..       .
T Consensus        82 ~~~~~~L~~~g~aY~C~Csr~~l~~~r~~~~~~~~~~~~~y~~~c~~~~~~~~~~~~~~~~~~~iRlk~~~~~~~~~~D~  161 (314)
T PF00749_consen   82 QEAAEKLIDKGKAYPCFCSREELKAAREAQEGAGCPHRPRYPGTCRELTEEEMRAGLAKGGPAVIRLKVPMESPIAFRDL  161 (314)
T ss_dssp             HHHHHHHHHTTSEEEEESEHHHHHHHHHHHHHTTSTTTTSBHHHHHCHHHHHHHHHHHTTTSEEEEE-SSSTCCEEEEET
T ss_pred             HHHHHHHhhcCCCccccCCHHHHHHHHHHhhccCCCccccchhhhhhhhHHHHHhhhccCCceeeeeecccccccccccC
Confidence            221111       4677776665533321            0         11000          00 001       0


Q ss_pred             cch-------hhhchHHHHHhhh------------hcCCCEEEecCcchHHHHHHHHHHHHhhhhh---CC------Ccc
Q 024523          198 GVA-------LLTYPVLMASDIL------------LYQSDFVPVGEDQKQHLELTRELAERVNYLY---GG------RKW  249 (266)
Q Consensus       198 ~~g-------~l~YPvLQAADIl------------~l~adlvpvG~DQ~~hleLaRdiA~r~n~~y---g~------~~~  249 (266)
                      -.|       .+-.++++=+|..            ..+.++|.=|.|-...--.-.-|.+.||...   ..      ..+
T Consensus       162 v~g~i~~~~~~~~D~vi~r~dg~ptY~fA~vVDD~~~gITHViRG~D~l~~t~~Q~~L~~~Lg~~~P~~~H~pl~l~~~g  241 (314)
T PF00749_consen  162 VRGRIIFDPSDLGDFVIRRSDGYPTYHFAVVVDDHLMGITHVIRGEDLLSSTPRQILLYEALGWPPPPYAHLPLILNEDG  241 (314)
T ss_dssp             TTEEEEEEGGGSBTEEEESTTSEB-HHHHHHHHHHHTT-SEEEEEGGGTTCHHHHHHHHHHCTSSS-EEEEEEEEEETTS
T ss_pred             cceeeeeccccCCchhccccccCcccccceeecccccccCeEEEccccccccHHHHHHHHHhCCCCcceEeeeeeecCCC
Confidence            011       1223333333333            2478999999999998888888888887652   10      016


Q ss_pred             cccCCCCCc
Q 024523          250 KKLGGRGGA  258 (266)
Q Consensus       250 ~k~g~~~~~  258 (266)
                      +|+-|+.++
T Consensus       242 ~kLSKR~~~  250 (314)
T PF00749_consen  242 KKLSKRKGA  250 (314)
T ss_dssp             SBSSTTCSH
T ss_pred             cEechhhcc
Confidence            788887763

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....

>PLN03233 putative glutamate-tRNA ligase; Provisional

Probab=96.56  E-value=0.0074  Score=60.93  Aligned_cols=92  Identities=17%  Similarity=0.134  Sum_probs=58.6

Q ss_pred             EEEec--CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEc
Q 024523           81 IVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ  157 (266)
Q Consensus        81 iytGi--~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~q  157 (266)
                      +.+=|  .|||.|||||.-.++-+|..-+. |..++ +=-|++   ++  .....+....+.+++.-+|++++  .+++|
T Consensus        12 v~tRFAPsPtG~LHiGharaAlln~l~Ar~~gG~~i-LRiEDT---Dp--~R~~~e~~~~I~~dL~WLGl~wD--~~~~q   83 (523)
T PLN03233         12 IVTRFPPEPSGYLHIGHAKAALLNDYYARRYKGRLI-LRFDDT---NP--SKEKAEFEESIIEDLGKIEIKPD--SVSFT   83 (523)
T ss_pred             EEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEE-EEECCC---CC--CccchHHHHHHHHHHHHhCCCCC--CCccc
Confidence            44444  46699999999988877754444 44444 433433   22  12345566777888888999998  47899


Q ss_pred             ccchh-hhHHHHH-------HhccCCHHHHh
Q 024523          158 SHVRA-HVELMWL-------LSSATPIGWLN  180 (266)
Q Consensus       158 Sd~~~-~~eL~w~-------Ls~~~tv~rL~  180 (266)
                      |+..+ |.+.+-.       +-|.+|-.+++
T Consensus        84 Sdr~~~y~~~a~~Li~~G~AY~C~cs~eel~  114 (523)
T PLN03233         84 SDYFEPIRCYAIILIEEGLAYMDDTPQEEMK  114 (523)
T ss_pred             cccHHHHHHHHHHHHHcCCeEecCCCHHHHH
Confidence            99654 3222222       46777877764

>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase

Probab=96.55  E-value=0.0096  Score=55.45  Aligned_cols=90  Identities=18%  Similarity=0.209  Sum_probs=57.9

Q ss_pred             CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcccchh-h
Q 024523           86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA-H  163 (266)
Q Consensus        86 ~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~qSd~~~-~  163 (266)
                      .|||.|||||...++-+|..-+. |..+++=|=|.=.    .  ....+....+.+++.-+||+.+.- .++||+..+ |
T Consensus         8 SPtG~lHiG~~rtAL~n~l~Ar~~gG~~iLRiEDtD~----~--R~~~~~~~~I~~dL~wLGl~wDe~-~~~QS~r~~~Y   80 (272)
T TIGR03838         8 SPSGPLHFGSLVAALGSYLDARAHGGRWLVRIEDLDP----P--REVPGAADDILRTLEAYGLHWDGE-VVYQSQRHALY   80 (272)
T ss_pred             CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCcCCC----C--CCChHHHHHHHHHHHHcCCCCCCC-eeeeeCCHHHH
Confidence            48899999999998878764444 5555555544221    1  123345566777778899998853 678999644 3


Q ss_pred             hHHHHH-------HhccCCHHHHhch
Q 024523          164 VELMWL-------LSSATPIGWLNKM  182 (266)
Q Consensus       164 ~eL~w~-------Ls~~~tv~rL~R~  182 (266)
                      .+..-.       +-|.+|-.++++.
T Consensus        81 ~~~~~~L~~~G~aY~C~Ct~eel~~~  106 (272)
T TIGR03838        81 QAALDRLLAAGLAYPCQCTRKEIAAA  106 (272)
T ss_pred             HHHHHHHHHcCCEEecCCCHHHHHHH
Confidence            222111       4688888877644

This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.

>PRK14895 gltX glutamyl-tRNA synthetase; Provisional

Probab=96.48  E-value=0.014  Score=58.91  Aligned_cols=95  Identities=19%  Similarity=0.197  Sum_probs=63.3

Q ss_pred             eEEEecCCC--CcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHH-HHHHHHHHHHHHHHHcCcCCCceEEE
Q 024523           80 RIVSGVQPT--GSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQ-QLSKATRETAAIYLACGIDNSKASVF  155 (266)
Q Consensus        80 ~iytGi~PT--G~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e-~ir~~~~~~~~~~lA~GlDp~Kt~if  155 (266)
                      .+.+.|.||  |.|||||...++-+|..-+. |.++++=|-|.       |.+ ...+....+.+++..+|||+|- ..|
T Consensus         4 ~vrtRFAPSPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIEDT-------D~~R~~~~~~~~i~~~L~WLGl~wDe-~py   75 (513)
T PRK14895          4 NVITRFAPSPTGFLHIGSARTALFNYLFARHHNGKFLLRIEDT-------DKERSTKEAVEAIFSGLKWLGLDWNG-EVI   75 (513)
T ss_pred             CeeEeeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCC-------CccccChHHHHHHHHHHHHcCCCCCC-Cce
Confidence            356777777  99999999999888865454 66666666664       111 2334555677788889999873 379


Q ss_pred             Ecccchh-hhHHHH-------HHhccCCHHHHhch
Q 024523          156 VQSHVRA-HVELMW-------LLSSATPIGWLNKM  182 (266)
Q Consensus       156 ~qSd~~~-~~eL~w-------~Ls~~~tv~rL~R~  182 (266)
                      +||+..+ |.+..-       .+-|.+|-.+++..
T Consensus        76 ~QSeR~~~Y~~~a~~Li~~G~AY~CfCt~eel~~~  110 (513)
T PRK14895         76 FQSKRNNLYKEAALKLLQNGKAYYCFTRQEEIERQ  110 (513)
T ss_pred             eEeCcHHHHHHHHHHHHHcCCeEEecCcHHHHHHH
Confidence            9999543 222211       15788888877543

>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional

Probab=96.42  E-value=0.0094  Score=58.91  Aligned_cols=89  Identities=24%  Similarity=0.272  Sum_probs=58.4

Q ss_pred             CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcccchh-h
Q 024523           86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA-H  163 (266)
Q Consensus        86 ~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~qSd~~~-~  163 (266)
                      .|||.|||||...++-+|..-+. |.++++=|=| +-..     ....+....+.+++.-+||+.|  +.|+||+..+ |
T Consensus         7 SPTG~LHiG~artAL~n~l~Ar~~gG~fiLRiED-TD~~-----R~~~e~~~~I~~~L~WlGl~wD--e~y~QSeR~~~Y   78 (433)
T PRK12410          7 SPTGDMHIGNLRAAIFNYIVAKQQNEDFLIRIED-TDKE-----RNIEGKDKEILEILNLFGISWD--KLVYQSENLKFH   78 (433)
T ss_pred             CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCc-CCCC-----cCChHHHHHHHHHHHHcCCCCC--CCeehhccHHHH
Confidence            48899999999999888865555 5565555544 2111     1233455667777788999998  4799999543 2


Q ss_pred             hHHHHH-------HhccCCHHHHhch
Q 024523          164 VELMWL-------LSSATPIGWLNKM  182 (266)
Q Consensus       164 ~eL~w~-------Ls~~~tv~rL~R~  182 (266)
                      .+..-.       +-|.+|-.+++.+
T Consensus        79 ~~~a~~Li~~G~AY~C~cs~eel~~~  104 (433)
T PRK12410         79 RQMAEKLLSEKKAFACFCSEEELEAK  104 (433)
T ss_pred             HHHHHHHHHcCCeeeecCCHHHHHHH
Confidence            222111       5788888877543

>PRK04156 gltX glutamyl-tRNA synthetase; Provisional

Probab=96.39  E-value=0.022  Score=58.04  Aligned_cols=159  Identities=15%  Similarity=0.084  Sum_probs=92.6

Q ss_pred             ceEEEecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEc
Q 024523           79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ  157 (266)
Q Consensus        79 ~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~q  157 (266)
                      .+...+=.|||.+||||...++-+|..-+. +..+++=|-|.    ++.......+....+.+++..+|++++  .+++|
T Consensus       102 V~tRFaPsPtG~LHIGharaalln~~~Ar~~~G~~iLRidDT----Dpk~~R~~~e~~~~I~edL~wLGl~wD--~~~~q  175 (567)
T PRK04156        102 VVMRFAPNPSGPLHLGHARAAILNDEYAKMYGGKFILRFEDT----DPRTKRPDPEAYDMILEDLKWLGVKWD--EVVIQ  175 (567)
T ss_pred             EEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeEccC----CCCcccchHHHHHHHHHHHHHcCCCCC--CccCc
Confidence            566777788899999999988867653333 44555555554    221112234455677888888999997  57899


Q ss_pred             ccchh-hhHHHHH-------HhccCCHHHHhchhh------------------HHHhhh----------hcC-C---CCc
Q 024523          158 SHVRA-HVELMWL-------LSSATPIGWLNKMIQ------------------FKEKSH----------KAG-G---ENV  197 (266)
Q Consensus       158 Sd~~~-~~eL~w~-------Ls~~~tv~rL~R~~~------------------~ke~~~----------~~g-~---~~i  197 (266)
                      |+..+ |.+..-.       +-|.++-.++++.-.                  |.+|..          ++. +   .+.
T Consensus       176 Sdr~~~y~~~a~~Li~~G~AY~C~cs~ee~~~~r~~g~~~~~R~~~~ee~l~~~e~m~~G~~~~g~~vlR~k~d~~~~n~  255 (567)
T PRK04156        176 SDRLEIYYEYARKLIEMGGAYVCTCDPEEFKELRDAGKPCPHRDKSPEENLELWEKMLDGEYKEGEAVVRVKTDLEHPNP  255 (567)
T ss_pred             ccCHHHHHHHHHHHHHcCCCccCCCCHHHHHHHHhcCCCCCCcCCCHHHHHHHHHHhhcCccccCCeEEEEECcccCCCC
Confidence            99644 2222211       466666555532210                  111100          000 0   000


Q ss_pred             c------------------chhhhchHHHHHhh---hhcCCCEEEecCcchHHHHHHHHHHHHhhhh
Q 024523          198 G------------------VALLTYPVLMASDI---LLYQSDFVPVGEDQKQHLELTRELAERVNYL  243 (266)
Q Consensus       198 ~------------------~g~l~YPvLQAADI---l~l~adlvpvG~DQ~~hleLaRdiA~r~n~~  243 (266)
                      +                  -+-..||.++=|..   -..+.+++.-|.|...+-..-..+.+.|+..
T Consensus       256 ~~rD~v~~R~~~~~h~~~Gd~~~i~PtY~fA~~VDD~l~GITHViRg~d~~~~t~~Q~~l~~~Lg~~  322 (567)
T PRK04156        256 SVRDWVAFRIVKTPHPRVGDKYRVWPTYNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYDYFGWE  322 (567)
T ss_pred             CccccEEEEEcCCCccccCCCeEEEEEeccCceeeecCCCCCeEEcccccccChHHHHHHHHHcCCC
Confidence            0                  01123565443322   2347999999999999888888888888753

>PTZ00402 glutamyl-tRNA synthetase; Provisional

Probab=96.28  E-value=0.018  Score=59.10  Aligned_cols=93  Identities=15%  Similarity=0.117  Sum_probs=58.5

Q ss_pred             EEEec--CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEc
Q 024523           81 IVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ  157 (266)
Q Consensus        81 iytGi--~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~q  157 (266)
                      +.+=|  +|||.|||||...++-+|..-+. +..+++=| |++   +|.  .+..+....+.+++..+|++.+. .+++|
T Consensus        53 v~tRFAPsPtGyLHIGharaAllN~l~Ar~~gG~~iLRi-EDT---Dp~--R~~~e~~d~IleDL~WLGl~wDe-~~~~Q  125 (601)
T PTZ00402         53 VVTRFPPEASGFLHIGHAKAALINSMLADKYKGKLVFRF-DDT---NPS--KEKEHFEQAILDDLATLGVSWDV-GPTYS  125 (601)
T ss_pred             eEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEE-cCC---CCc--ccCHHHHHHHHHHHHHCCCCCCC-ceeec
Confidence            44444  56699999999988878764444 44444433 333   221  23456677788888899999874 37889


Q ss_pred             ccchh-hhHHHHH-------HhccCCHHHHh
Q 024523          158 SHVRA-HVELMWL-------LSSATPIGWLN  180 (266)
Q Consensus       158 Sd~~~-~~eL~w~-------Ls~~~tv~rL~  180 (266)
                      |+..+ |.+..-.       +.|.++-.+++
T Consensus       126 Sdr~d~y~e~a~~Li~~G~AY~c~cs~eei~  156 (601)
T PTZ00402        126 SDYMDLMYEKAEELIKKGLAYCDKTPREEMQ  156 (601)
T ss_pred             cccHHHHHHHHHHHHHcCCEEEecCCHHHHH
Confidence            99654 2222211       46777766553

>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family

Probab=96.27  E-value=0.014  Score=59.42  Aligned_cols=93  Identities=17%  Similarity=0.125  Sum_probs=58.3

Q ss_pred             eEEEec--CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEE
Q 024523           80 RIVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFV  156 (266)
Q Consensus        80 ~iytGi--~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~  156 (266)
                      .+.+=|  .|||.|||||...++-+|..-+. +..+++=+=| +   +|.  ....+....+.+++..+|++++  .+++
T Consensus        93 ~vvtRFaPsPtG~LHiGharaalln~~~Ar~~~G~~iLRidD-T---Dp~--R~~~e~~~~I~edL~wLGi~~d--~~~~  164 (560)
T TIGR00463        93 EVVMRFAPNPSGPLHIGHARAAILNQYFAKKYKGKLIIRFDD-T---DPR--RVKPEAYDMILEDLDWLGVKGD--EVVY  164 (560)
T ss_pred             eeEEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCEEEEEeCc-C---Ccc--cccHHHHHHHHHHHHHcCCCCC--cccc
Confidence            455555  45699999999988867653333 4444444444 2   221  2344566777888889999997  5789


Q ss_pred             cccchh-hhHHHHH-------HhccCCHHHHh
Q 024523          157 QSHVRA-HVELMWL-------LSSATPIGWLN  180 (266)
Q Consensus       157 qSd~~~-~~eL~w~-------Ls~~~tv~rL~  180 (266)
                      ||+..+ +.+..-.       +-|.++-.+++
T Consensus       165 qSd~~~~y~~~a~~Li~~G~AY~C~cs~eei~  196 (560)
T TIGR00463       165 QSDRIEEYYDYCRKLIEMGKAYVCDCPPEEFR  196 (560)
T ss_pred             ccccHHHHHHHHHHHHHcCCceeecCCHHHHH
Confidence            999644 3222211       46777776664

The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).

>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]

Probab=96.19  E-value=0.015  Score=58.19  Aligned_cols=171  Identities=21%  Similarity=0.200  Sum_probs=99.4

Q ss_pred             EEEecC--CCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEc
Q 024523           81 IVSGVQ--PTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ  157 (266)
Q Consensus        81 iytGi~--PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~q  157 (266)
                      |.+=|-  |||.+||||...++-+|..-+. |.++++=|=|.    ++.  ....+....+.+++.-+||+++.. +|+|
T Consensus        10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar~~~G~fiLRiEDT----D~~--R~~~e~~~~I~~~L~WLGl~wde~-~~~Q   82 (472)
T COG0008          10 VRTRFAPSPTGYLHIGHARTALLNYLYARKYGGKFILRIEDT----DPE--RETPEAEDAILEDLEWLGLDWDEG-PYYQ   82 (472)
T ss_pred             eEEEECcCCCCccchHHHHHHHHHHHHHHHhCCEEEEEecCC----CCC--CCCHHHHHHHHHHHHhcCCCCCCc-eeeh
Confidence            445554  5699999999998888865555 56666555442    221  123345556666777899999864 8999


Q ss_pred             ccchh-hhHHH-HH------HhccCCHHHHhchh-----------hHH---------HhhhhcCC----------C----
Q 024523          158 SHVRA-HVELM-WL------LSSATPIGWLNKMI-----------QFK---------EKSHKAGG----------E----  195 (266)
Q Consensus       158 Sd~~~-~~eL~-w~------Ls~~~tv~rL~R~~-----------~~k---------e~~~~~g~----------~----  195 (266)
                      |+..+ |.+.. ++      +-|.+|-.+|+.+-           .|.         ++....+.          +    
T Consensus        83 S~r~~~Y~~~~~~Li~~G~AY~c~ct~eele~~R~~~~~~g~~p~~y~r~~~~L~~~~~~~~~~~~~~~viR~k~~~~~~  162 (472)
T COG0008          83 SERFDIYYEYAEKLIEKGKAYVCYCTPEELEEMRELRGALGEPPPSYDRDERNLTLFEKMADLGEGGPAVVRLKIPMAHP  162 (472)
T ss_pred             hhhHHHHHHHHHHHHHCCCeEEecCCHHHHHHHHHHHhhcCCCCCCCCchhhccchHHHHhhcccCCCeEEEEeCCCCCC
Confidence            99644 22221 22      46777776555441           110         11111000          0    


Q ss_pred             -----Cccchhhhch------HHHHHhhhh------------cCCCEEEecCcchHHHHHHHHHHHHhhhhh---C----
Q 024523          196 -----NVGVALLTYP------VLMASDILL------------YQSDFVPVGEDQKQHLELTRELAERVNYLY---G----  245 (266)
Q Consensus       196 -----~i~~g~l~YP------vLQAADIl~------------l~adlvpvG~DQ~~hleLaRdiA~r~n~~y---g----  245 (266)
                           +.-.|.+..+      +++-+|++.            .+.++|.-|.|+..+-..-+-+.+.||...   .    
T Consensus       163 ~~~~~D~v~g~i~~~~~~~~dv~~r~dg~ptY~favvvDD~~mgITHviRG~d~~~nt~~q~~l~~~lg~~~P~~~H~~l  242 (472)
T COG0008         163 GPVFRDLVRGRIVFAPKHPDFVILRYDGYPTYNFAVVVDDHLMGITHVLRGEDHLDNTPRQIWLYEALGWPPPVYAHLPL  242 (472)
T ss_pred             CCccccceeeeEecCccCCcceeecCCCCcccceeeeechhhcCCceEEechhhccCCHHHHHHHHHcCCCCCcEEEeee
Confidence                 0112333333      333444443            268899999999998888888888887543   1    


Q ss_pred             --CCcccccCCCCCc
Q 024523          246 --GRKWKKLGGRGGA  258 (266)
Q Consensus       246 --~~~~~k~g~~~~~  258 (266)
                        ...++|+-||.+.
T Consensus       243 i~~~~g~kLSKr~~~  257 (472)
T COG0008         243 LLNEDGKKLSKRKGA  257 (472)
T ss_pred             eecCCCCeecCccCc
Confidence              0115677777763

>PRK05347 glutaminyl-tRNA synthetase; Provisional

Probab=96.14  E-value=0.025  Score=57.51  Aligned_cols=93  Identities=14%  Similarity=0.037  Sum_probs=57.5

Q ss_pred             EEEec--CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEc
Q 024523           81 IVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ  157 (266)
Q Consensus        81 iytGi--~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~q  157 (266)
                      +.+=|  .|||.|||||.-.++-+|..-+. +..++ +=-|++   ++.  ....+....+.+++.-+|++++- .+++|
T Consensus        30 v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~i-LRieDT---d~~--r~~~e~~~~I~~dL~wLGi~~d~-~~~~q  102 (554)
T PRK05347         30 VHTRFPPEPNGYLHIGHAKSICLNFGLAQDYGGKCN-LRFDDT---NPE--KEDQEYVDSIKEDVRWLGFDWSG-ELRYA  102 (554)
T ss_pred             eEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEE-EEECCC---CCC--cCChHHHHHHHHHHHHcCCCCCC-Cceee
Confidence            44444  56699999999888877754444 44444 433443   221  13445666777788889999842 47889


Q ss_pred             ccchh-hhHHHHH-------HhccCCHHHHh
Q 024523          158 SHVRA-HVELMWL-------LSSATPIGWLN  180 (266)
Q Consensus       158 Sd~~~-~~eL~w~-------Ls~~~tv~rL~  180 (266)
                      |+..+ +.+.+..       +-|.+|-.+++
T Consensus       103 S~r~~~~y~~a~~Li~~G~AY~c~cs~eei~  133 (554)
T PRK05347        103 SDYFDQLYEYAVELIKKGKAYVDDLSAEEIR  133 (554)
T ss_pred             ecCHHHHHHHHHHHHHcCCEeeCCCCHHHHH
Confidence            99654 4333332       46777766553

>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete

Probab=96.11  E-value=0.021  Score=57.56  Aligned_cols=80  Identities=23%  Similarity=0.304  Sum_probs=53.2

Q ss_pred             CceEEEecCCCCcchhhhHHHHHHH--HHH-Hhc-cCcE-EEEEecce---------------eeec------CC----C
Q 024523           78 KKRIVSGVQPTGSIHLGNYLGAIKN--WIA-LQN-SYET-LFFIVDLH---------------AITL------PY----D  127 (266)
Q Consensus        78 ~~~iytGi~PTG~lHLGh~ig~i~k--~~~-LQ~-g~~v-~ilIADlh---------------A~~~------~~----~  127 (266)
                      +..+=||+.|||.+||||+..++..  +.+ +.. |.++ +|+.+|.|               .+++      |.    .
T Consensus        19 ~~~~~tg~~psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp~g~~   98 (515)
T TIGR00467        19 LYTVASGITPSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDPEGCK   98 (515)
T ss_pred             eEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCCCCCc
Confidence            6789999999999999998776632  333 344 7886 67899999               2222      11    1


Q ss_pred             HHHHHHHHHHHHHHHHHcCcCCCceEEEEcccc
Q 024523          128 TQQLSKATRETAAIYLACGIDNSKASVFVQSHV  160 (266)
Q Consensus       128 ~e~ir~~~~~~~~~~lA~GlDp~Kt~if~qSd~  160 (266)
                      ..-..++-....+.+-.+||+   .+|+.+++.
T Consensus        99 ~s~~~h~~~~~~~~l~~~gi~---~e~~s~te~  128 (515)
T TIGR00467        99 TSYAEHFLIPFLESLPVLGIN---PEFIRASKQ  128 (515)
T ss_pred             HHHHHHHHHHHHHHHHHcCCe---EEEEEHHHh
Confidence            222333444555566668986   578888874

This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.

>PTZ00437 glutaminyl-tRNA synthetase; Provisional

Probab=96.03  E-value=0.021  Score=58.18  Aligned_cols=94  Identities=13%  Similarity=-0.000  Sum_probs=58.1

Q ss_pred             ceEEEecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEc
Q 024523           79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ  157 (266)
Q Consensus        79 ~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~q  157 (266)
                      .+.=..=.|||.|||||...++-+|..-+. |..+++=| |++   ++.  ....+....+.+++.-+|++++.  +++|
T Consensus        52 v~tRFaPsPtG~LHiGharaalln~~~Ar~~gG~~iLRi-EDT---Dp~--r~~~e~~~~I~~dL~wLGi~~D~--~~~q  123 (574)
T PTZ00437         52 PYFRFPPEPNGFLHIGHAKSMNLNFGSARAHGGKCYLRY-DDT---NPE--TEEQVYIDAIMEMVKWMGWKPDW--VTFS  123 (574)
T ss_pred             EEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEE-CCC---Ccc--ccChHHHHHHHHHHHHcCCCCCC--CCcC
Confidence            333344456799999999888877754444 54554444 333   221  23445667778888889999984  5689


Q ss_pred             ccchh-hhHHHHH-------HhccCCHHHHh
Q 024523          158 SHVRA-HVELMWL-------LSSATPIGWLN  180 (266)
Q Consensus       158 Sd~~~-~~eL~w~-------Ls~~~tv~rL~  180 (266)
                      |++.+ +.+.+-.       +-|.++-.+++
T Consensus       124 S~y~~~~ye~A~~Li~~G~AY~C~cs~eei~  154 (574)
T PTZ00437        124 SDYFDQLHEFAVQLIKDGKAYVDHSTPDELK  154 (574)
T ss_pred             chhHHHHHHHHHHHHHcCCEEEcCCCHHHHH
Confidence            98755 3232222       36777766654

>PRK12558 glutamyl-tRNA synthetase; Provisional

Probab=95.99  E-value=0.024  Score=56.32  Aligned_cols=88  Identities=23%  Similarity=0.198  Sum_probs=57.4

Q ss_pred             CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcccchh-h
Q 024523           86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA-H  163 (266)
Q Consensus        86 ~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~qSd~~~-~  163 (266)
                      .|||.|||||...++-+|..-.. |.++++=|=|.= .     .....+....+.+++..+|++.|  ++|+||+..+ |
T Consensus        10 SPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIEDTD-~-----~Rs~~~~~~~I~e~L~wLGI~~D--e~y~QSer~~~y   81 (445)
T PRK12558         10 SPTGYLHVGNARTALLNWLYARKHGGKFILRIDDTD-L-----ERSKQEYADAIAEDLKWLGINWD--RTFRQSDRFDRY   81 (445)
T ss_pred             CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeccCC-c-----ccchHHHHHHHHHHHHHcCCCCC--ccccHHHHHHHH
Confidence            47799999999999888865444 555555555532 1     11234555677778888999988  4799998533 2


Q ss_pred             hHHHH-------HHhccCCHHHHhc
Q 024523          164 VELMW-------LLSSATPIGWLNK  181 (266)
Q Consensus       164 ~eL~w-------~Ls~~~tv~rL~R  181 (266)
                      .+..-       .+-|.+|-.+++.
T Consensus        82 ~~~~e~L~e~G~AY~C~Ct~eel~~  106 (445)
T PRK12558         82 DEAAEKLKAAGRLYPCYETPEELEL  106 (445)
T ss_pred             HHHHHHHHHCCCEEEecCchHHHHH
Confidence            21111       1467888777753

>TIGR00440 glnS glutaminyl-tRNA synthetase

Probab=95.90  E-value=0.035  Score=56.14  Aligned_cols=88  Identities=10%  Similarity=-0.024  Sum_probs=55.4

Q ss_pred             CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcccchh-h
Q 024523           86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA-H  163 (266)
Q Consensus        86 ~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~qSd~~~-~  163 (266)
                      .|||.|||||.-.++-+|..-+. +..+++=| |++   ++.  ....+....+.+++.-+|++++ -.+++||+..+ |
T Consensus         8 sPtG~LHiG~ar~al~n~~~A~~~~G~~iLRi-eDT---d~~--r~~~e~~~~I~~dL~wLG~~~d-~~~~~qS~~~~~~   80 (522)
T TIGR00440         8 EPNGYLHIGHAKSICLNFGYAKYYNGTCNLRF-DDT---NPV--KEDPEYVESIKRDVEWLGFKWE-GKIRYSSDYFDEL   80 (522)
T ss_pred             CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEE-cCC---Ccc--cCChHHHHHHHHHHHHcCCCCC-CCceEccccHHHH
Confidence            58899999999888877754444 44444444 433   221  2334566677778888999984 23678999654 3


Q ss_pred             hHHHHH-------HhccCCHHHHh
Q 024523          164 VELMWL-------LSSATPIGWLN  180 (266)
Q Consensus       164 ~eL~w~-------Ls~~~tv~rL~  180 (266)
                      .+.+-.       +-|.++-.+++
T Consensus        81 ~~~a~~Li~~G~AY~c~cs~eel~  104 (522)
T TIGR00440        81 YRYAEELIKKGLAYVDELTPEEIR  104 (522)
T ss_pred             HHHHHHHHHcCCEEeecCCHHHHH
Confidence            332221       46777766554

This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.

>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family

Probab=95.88  E-value=0.029  Score=55.92  Aligned_cols=89  Identities=18%  Similarity=0.140  Sum_probs=57.4

Q ss_pred             CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcccchh-h
Q 024523           86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA-H  163 (266)
Q Consensus        86 ~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~qSd~~~-~  163 (266)
                      .|||.|||||...++-+|..-.. |.++++=|=| +   ++.  ....+....+.+++.-+||+.|- ..|+||+..+ |
T Consensus         9 sPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieD-t---D~~--R~~~~~~~~i~~~L~wlGl~~de-~~~~QS~r~~~y   81 (470)
T TIGR00464         9 SPTGYLHIGGARTALFNYLFAKHTGGEFILRIED-T---DLE--RNIEEAEEAILEGLKWLGISWDE-GPYYQSQRLDIY   81 (470)
T ss_pred             CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCc-C---CCc--cCChHHHHHHHHHHHHCCCCCCC-CeeehhCCHHHH
Confidence            47899999999998888864444 5555554544 3   211  12334566777788889999873 4899999543 3


Q ss_pred             hHHHHH-------HhccCCHHHHhc
Q 024523          164 VELMWL-------LSSATPIGWLNK  181 (266)
Q Consensus       164 ~eL~w~-------Ls~~~tv~rL~R  181 (266)
                      .+..-.       +-|.+|-.++++
T Consensus        82 ~~~~~~L~~~g~aY~C~ct~~~l~~  106 (470)
T TIGR00464        82 KKYAKELLEEGLAYRCYCSKERLER  106 (470)
T ss_pred             HHHHHHHHHcCCEEecCCChHHHHH
Confidence            222211       467788777653

The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.

>PRK00133 metG methionyl-tRNA synthetase; Reviewed

Probab=95.86  E-value=0.025  Score=58.50  Aligned_cols=86  Identities=21%  Similarity=0.352  Sum_probs=56.3

Q ss_pred             CCceEEEec-CCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEecce-eeec--C-----CCH-HHHHHHHHHHHHHH
Q 024523           77 VKKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIVDLH-AITL--P-----YDT-QQLSKATRETAAIY  142 (266)
Q Consensus        77 ~~~~iytGi-~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~ilIADlh-A~~~--~-----~~~-e~ir~~~~~~~~~~  142 (266)
                      ++..|-+++ -|+|.+||||..+.+  .-+.++++  |++|+++.++++ ..-.  .     .++ +...+++..+.+++
T Consensus         2 ~~~~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~   81 (673)
T PRK00133          2 RKILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRDF   81 (673)
T ss_pred             CCEEEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            456777787 699999999987755  33445554  889877765544 3211  0     244 45667778889999


Q ss_pred             HHcCcCCCceEEEEcccchhhhH
Q 024523          143 LACGIDNSKASVFVQSHVRAHVE  165 (266)
Q Consensus       143 lA~GlDp~Kt~if~qSd~~~~~e  165 (266)
                      .++|++++.   |....-++|.+
T Consensus        82 ~~l~i~~d~---f~rtt~~~h~~  101 (673)
T PRK00133         82 AGFGISFDN---YGSTHSEENRE  101 (673)
T ss_pred             HHhCCCCCC---CccCCcHHHHH
Confidence            999998762   44444344533

>PLN02907 glutamate-tRNA ligase

Probab=95.69  E-value=0.034  Score=58.24  Aligned_cols=156  Identities=15%  Similarity=0.124  Sum_probs=88.6

Q ss_pred             eEEEec--CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEE
Q 024523           80 RIVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFV  156 (266)
Q Consensus        80 ~iytGi--~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~  156 (266)
                      .+.+=|  +|||.|||||.-.++-+|..-+. |..+++=| |++   +|.  .+..+....+.+++.-+|+++++  +++
T Consensus       213 ~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~iLR~-eDT---dp~--r~~~e~~~~I~~dl~wLG~~~d~--~~~  284 (722)
T PLN02907        213 KVCTRFPPEPSGYLHIGHAKAALLNQYFARRYKGKLIVRF-DDT---NPS--KESDEFVENILKDIETLGIKYDA--VTY  284 (722)
T ss_pred             ceEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEe-cCC---CCC--cCChHHHHHHHHHHHHcCCCCCC--ccc
Confidence            355555  45699999999888877754333 44444433 443   221  12335566677778889999984  689


Q ss_pred             cccchh-hhHHHHH-------HhccCCHHHHhchh-----------h-------HHHhhhh-c-C------------CCC
Q 024523          157 QSHVRA-HVELMWL-------LSSATPIGWLNKMI-----------Q-------FKEKSHK-A-G------------GEN  196 (266)
Q Consensus       157 qSd~~~-~~eL~w~-------Ls~~~tv~rL~R~~-----------~-------~ke~~~~-~-g------------~~~  196 (266)
                      ||+..+ |.+..-.       +.|.++..+++...           +       |.+|... + +            ..+
T Consensus       285 qS~r~~~y~~~a~~Li~~G~aY~~~~~~~~~~~~~~~~~~~~~R~~~~ee~~~~~~~m~~g~~~~~~~~lR~k~d~~~~n  364 (722)
T PLN02907        285 TSDYFPQLMEMAEKLIKEGKAYVDDTPREQMRKERMDGIESKCRNNSVEENLRLWKEMIAGSERGLQCCVRGKLDMQDPN  364 (722)
T ss_pred             ccccHHHHHHHHHHHHHcCCeeecCCCHHHHHHHHhcCCCCCccCCCHHHHHHHHHHHhcccccCCCeEEEEEcccCCCC
Confidence            999654 3222211       35667766554221           0       1111100 0 0            001


Q ss_pred             ccchh-h-----------------hchHHHHHhhhh---cCCCEEEecCcchHHHHHHHHHHHHhhhh
Q 024523          197 VGVAL-L-----------------TYPVLMASDILL---YQSDFVPVGEDQKQHLELTRELAERVNYL  243 (266)
Q Consensus       197 i~~g~-l-----------------~YPvLQAADIl~---l~adlvpvG~DQ~~hleLaRdiA~r~n~~  243 (266)
                      .++.- +                 .||..+=|-.+-   .+.+++..|.|...+-..-.-+.+.++..
T Consensus       365 ~~~~D~v~~R~~~~~h~~~gd~~~~~PtY~fa~~vdD~~~gIThvlRg~e~~~~t~~q~~l~~~lg~~  432 (722)
T PLN02907        365 KSLRDPVYYRCNPTPHHRIGSKYKVYPTYDFACPFVDALEGVTHALRSSEYHDRNAQYYRILEDMGLR  432 (722)
T ss_pred             CCcccCEEEEecCCcccccCCccceeeccCCceEEEcccCCCceEeecHhhhhChHHHHHHHHHcCCC
Confidence            11111 1                 155544443332   36899999999999888888888888743

>PLN02859 glutamine-tRNA ligase

Probab=95.59  E-value=0.041  Score=58.01  Aligned_cols=89  Identities=12%  Similarity=0.038  Sum_probs=55.3

Q ss_pred             ecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcccchh
Q 024523           84 GVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA  162 (266)
Q Consensus        84 Gi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~qSd~~~  162 (266)
                      .=+|||.|||||.-.++-+|..-+. |..+++=+ |++   +|.  .+..+....+.+++.-+|++++  .+++||++.+
T Consensus       270 aPsPtG~LHiGharaallN~~~Ar~~~G~~~LRi-eDT---dp~--r~~~e~~~~I~edL~WLG~~~d--~~~~qSd~f~  341 (788)
T PLN02859        270 PPEPNGYLHIGHAKAMFVDFGLAKERGGCCYLRF-DDT---NPE--AEKKEYIDHIEEIVEWMGWEPF--KITYTSDYFQ  341 (788)
T ss_pred             CCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEe-cCC---CCC--ccchHHHHHHHHHHHHcCCCCC--CcccccHhHH
Confidence            3356799999999888777754444 44444433 443   221  2344566667777788999997  4789999763


Q ss_pred             -hhHHHHH-------HhccCCHHHHh
Q 024523          163 -HVELMWL-------LSSATPIGWLN  180 (266)
Q Consensus       163 -~~eL~w~-------Ls~~~tv~rL~  180 (266)
                       +.+.+-.       +-|.++-.+++
T Consensus       342 ~~Y~~A~~Li~~G~AY~C~ct~eei~  367 (788)
T PLN02859        342 ELYELAVELIRRGHAYVDHQTPEEIK  367 (788)
T ss_pred             HHHHHHHHHHHcCCeEeccCCHHHHH
Confidence             3332222       46777766553

>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional

Probab=95.49  E-value=0.057  Score=56.98  Aligned_cols=93  Identities=12%  Similarity=0.097  Sum_probs=56.3

Q ss_pred             EEEec--CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEc
Q 024523           81 IVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ  157 (266)
Q Consensus        81 iytGi--~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~q  157 (266)
                      +.+=|  .|||.|||||.-.++-+|..-+. +..+++=| |++   ++.  ....+....+.+++.-+|++++. .+++|
T Consensus        32 v~tRFaPsPtG~lHiGhar~alln~~~A~~~~G~~~LR~-eDT---d~~--r~~~e~~~~I~~dl~wLG~~wd~-~~~~q  104 (771)
T PRK14703         32 VVTRFPPEPNGYLHIGHAKSILLNFGIARDYGGRCHLRM-DDT---NPE--TEDTEYVEAIKDDVRWLGFDWGE-HLYYA  104 (771)
T ss_pred             eEEEeCcCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEe-CCC---CCC--cCChHHHHHHHHHHHHcCCCCCC-CceEe
Confidence            44544  56699999999888867754443 44444433 333   221  13445666777788889999763 36889


Q ss_pred             ccchh-hhHHHH-------HHhccCCHHHHh
Q 024523          158 SHVRA-HVELMW-------LLSSATPIGWLN  180 (266)
Q Consensus       158 Sd~~~-~~eL~w-------~Ls~~~tv~rL~  180 (266)
                      |+..+ |.+..-       .+-|.++-.+++
T Consensus       105 S~~~~~y~~~a~~Li~~G~aY~c~cs~eei~  135 (771)
T PRK14703        105 SDYFERMYAYAEQLIKMGLAYVDSVSEEEIR  135 (771)
T ss_pred             ecCHHHHHHHHHHHHHcCCcccCcCCHHHHH
Confidence            99654 222211       146777766553

>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=95.49  E-value=0.04  Score=56.14  Aligned_cols=78  Identities=24%  Similarity=0.397  Sum_probs=54.2

Q ss_pred             CCCCcchhhhHHHHH--HHHHHHhc--cCcEEEE-Eecceeeec--C-----CCHH-HHHHHHHHHHHHHHHcCcCCCce
Q 024523           86 QPTGSIHLGNYLGAI--KNWIALQN--SYETLFF-IVDLHAITL--P-----YDTQ-QLSKATRETAAIYLACGIDNSKA  152 (266)
Q Consensus        86 ~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~il-IADlhA~~~--~-----~~~e-~ir~~~~~~~~~~lA~GlDp~Kt  152 (266)
                      -|.|.+||||....|  .-|.++|.  |++++++ =.|-|..-.  .     .+|+ -+.++..+...+|.+++|+-|  
T Consensus        15 Y~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~~~~l~IsfD--   92 (558)
T COG0143          15 YPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKELFKALNISFD--   92 (558)
T ss_pred             CCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCccc--
Confidence            478999999988766  44777877  8998665 455665422  1     2554 467777889999999998754  


Q ss_pred             EEEEcccchhhhHH
Q 024523          153 SVFVQSHVRAHVEL  166 (266)
Q Consensus       153 ~if~qSd~~~~~eL  166 (266)
                       .|..+.-++|.++
T Consensus        93 -~F~rTt~~~h~~~  105 (558)
T COG0143          93 -NFIRTTSPEHKEL  105 (558)
T ss_pred             -ccccCCCHHHHHH
Confidence             5555555556544

>PRK01611 argS arginyl-tRNA synthetase; Reviewed

Probab=95.42  E-value=0.067  Score=53.47  Aligned_cols=167  Identities=16%  Similarity=0.182  Sum_probs=90.4

Q ss_pred             EEEecCCCCcchhhhHHHHH--HHHHHHhc--cCcEEE--EEecceeeecC------CCHHHH-HHHHHHHHHHHHHcCc
Q 024523           81 IVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLF--FIVDLHAITLP------YDTQQL-SKATRETAAIYLACGI  147 (266)
Q Consensus        81 iytGi~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~i--lIADlhA~~~~------~~~e~i-r~~~~~~~~~~lA~Gl  147 (266)
                      -|+|--|+|++|+||.-+++  .-+.++.+  |++|..  -+.|+-..+..      ..++++ ......+.+++..+|+
T Consensus       116 e~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~l~~LgI  195 (507)
T PRK01611        116 EYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIKEDLDRLGV  195 (507)
T ss_pred             EecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            36688999999999987755  34555544  888743  36666433321      123333 3444667888889998


Q ss_pred             CCCceEEEEcccchhhhHHHHHHhccCCHHHHhch-hhH-HHhh------hhcCCC-C----ccchhhhchHHHHHhhhh
Q 024523          148 DNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKM-IQF-KEKS------HKAGGE-N----VGVALLTYPVLMASDILL  214 (266)
Q Consensus       148 Dp~Kt~if~qSd~~~~~eL~w~Ls~~~tv~rL~R~-~~~-ke~~------~~~g~~-~----i~~g~l~YPvLQAADIl~  214 (266)
                      ..+  .+++.|+........+.+.      +|... ..| ....      ..++++ .    -+=|..+|..   .||-+
T Consensus       196 ~~D--~~~~es~~~~~~~~~~~~~------~L~~~G~~y~~~~Ga~~~~~~~~~~~~~~vl~ksdG~~~Y~t---~Dia~  264 (507)
T PRK01611        196 HFD--VWFSESELYYNGKVDEVVE------DLKEKGLLYVESDGALWVRLTEFGDDKDRVLIKSDGTYTYFT---RDIAY  264 (507)
T ss_pred             eee--EEeecCcchhcchHHHHHH------HHHHCCCEEEeeCCcEEEEchhhCCCCCeEEEECCCCccchH---HHHHH
Confidence            774  3455554311101111110      11110 001 0000      011100 0    0224455633   35544


Q ss_pred             c-------CCCEEEecCcchHHHHHHHHHHHHhhhhhC-CC-------------cccccCCCCCc
Q 024523          215 Y-------QSDFVPVGEDQKQHLELTRELAERVNYLYG-GR-------------KWKKLGGRGGA  258 (266)
Q Consensus       215 l-------~adlvpvG~DQ~~hleLaRdiA~r~n~~yg-~~-------------~~~k~g~~~~~  258 (266)
                      .       +.-+-.+|.||..|+.-...+++.+|+.-. .+             .++||-||.|.
T Consensus       265 ~~~k~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~h~~~glv~~~~g~KMSkR~Gn  329 (507)
T PRK01611        265 HLYKFERFDRVIYVVGADHHGHFKRLKAALKALGYDPDALEVLLHQMVGLVRGGEGVKMSTRAGN  329 (507)
T ss_pred             HHHHHhhcCEEEEEECCChHHHHHHHHHHHHHcCCCcccceEEEEEEEEeeECCCCCcccCCCCc
Confidence            2       344459999999999999999999985311 11             15689999884

>PLN02627 glutamyl-tRNA synthetase

Probab=95.41  E-value=0.047  Score=55.39  Aligned_cols=97  Identities=16%  Similarity=0.159  Sum_probs=60.2

Q ss_pred             ceEEEecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCce-----
Q 024523           79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKA-----  152 (266)
Q Consensus        79 ~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt-----  152 (266)
                      .++=.-=-|||.|||||...++-+|..-+. |.++++=|=| +-..     ....+....+.+++.-+|||.|..     
T Consensus        46 vr~RFAPSPTG~LHiG~aRtAL~n~l~Ar~~gG~fiLRIED-TD~~-----R~~~e~~~~I~~~L~WLGl~wDegp~~gg  119 (535)
T PLN02627         46 VRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIED-TDLA-----RSTKESEEAVLRDLKWLGLDWDEGPDVGG  119 (535)
T ss_pred             eEEEeCCCCCCCccHHHHHHHHHHHHHHHHhCCEEEEEeCc-CCCC-----CCChHHHHHHHHHHHHcCCCCCcCcccCC
Confidence            344344456799999999999988875555 5555555544 3111     123345566777777899998753     


Q ss_pred             --EEEEcccchh-hhHHHH-------HHhccCCHHHHhc
Q 024523          153 --SVFVQSHVRA-HVELMW-------LLSSATPIGWLNK  181 (266)
Q Consensus       153 --~if~qSd~~~-~~eL~w-------~Ls~~~tv~rL~R  181 (266)
                        --|+||+-.+ |.+..-       .+-|.+|-.+++.
T Consensus       120 ~~gpy~QSeR~~~Y~~~a~~Li~~G~AY~CfCs~eel~~  158 (535)
T PLN02627        120 EYGPYRQSERNAIYKQYAEKLLESGHVYPCFCTDEELEA  158 (535)
T ss_pred             CCCCeeeeccHHHHHHHHHHHHHcCCeeeccCChHHHHH
Confidence              2589999543 222211       1577788777653

>PLN02224 methionine-tRNA ligase

Probab=94.95  E-value=0.13  Score=53.08  Aligned_cols=73  Identities=11%  Similarity=0.152  Sum_probs=51.1

Q ss_pred             CceEEEec-CCCCcchhhhHHHHH--HHHHHHhc--cCcEEEE-Eecceeee--cC-----CCH-HHHHHHHHHHHHHHH
Q 024523           78 KKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFF-IVDLHAIT--LP-----YDT-QQLSKATRETAAIYL  143 (266)
Q Consensus        78 ~~~iytGi-~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~il-IADlhA~~--~~-----~~~-e~ir~~~~~~~~~~l  143 (266)
                      ++.|-++. -|+|.+||||..+.+  .-+.+++.  |++|++. =.|.|..-  ..     .++ +.+++++..+.+.+.
T Consensus        70 ~~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~~~~~~  149 (616)
T PLN02224         70 TFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSYRTLWK  149 (616)
T ss_pred             eEEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence            46677777 778999999988755  33455554  8888655 56777631  10     133 566777788888999


Q ss_pred             HcCcCCC
Q 024523          144 ACGIDNS  150 (266)
Q Consensus       144 A~GlDp~  150 (266)
                      ++|++++
T Consensus       150 ~l~I~~D  156 (616)
T PLN02224        150 DLDIAYD  156 (616)
T ss_pred             HcCCCCC
Confidence            9999887

>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed

Probab=94.92  E-value=0.094  Score=52.40  Aligned_cols=168  Identities=20%  Similarity=0.165  Sum_probs=98.5

Q ss_pred             CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCce------EEEEcc
Q 024523           86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKA------SVFVQS  158 (266)
Q Consensus        86 ~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt------~if~qS  158 (266)
                      .|||.|||||...++-+|..-.. |.++++=|=| +-..     ....+....+.+++.-+||+.|.-      -.|+||
T Consensus        12 SPtG~lHiG~~rtal~n~l~Ar~~~G~fiLRieD-tD~~-----R~~~~~~~~i~~~L~wlGl~~De~p~~~~~gpy~QS   85 (476)
T PRK01406         12 SPTGYLHIGGARTALFNWLFARHHGGKFILRIED-TDQE-----RSTEEAEEAILEGLKWLGLDWDEGPDGGPYGPYRQS   85 (476)
T ss_pred             CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCc-CCCC-----CCChHHHHHHHHHHHHCCCCCCCCCccCCCCceehh
Confidence            46799999999988888864444 5555544444 3211     123445566777778899998743      158999


Q ss_pred             cchh-hhHHHH-------HHhccCCHHHHhchhh-------------------HHHhhhhc--CC---------C--C--
Q 024523          159 HVRA-HVELMW-------LLSSATPIGWLNKMIQ-------------------FKEKSHKA--GG---------E--N--  196 (266)
Q Consensus       159 d~~~-~~eL~w-------~Ls~~~tv~rL~R~~~-------------------~ke~~~~~--g~---------~--~--  196 (266)
                      +..+ |.+..-       .+-|.+|-.+|+..-.                   -.++.+..  |.         +  .  
T Consensus        86 ~r~~~y~~~~~~L~~~g~aY~C~cs~eel~~~r~~~~~~~~~~~y~~~cr~~~~~~~~~~~~~g~~~~iR~k~p~~~~~~  165 (476)
T PRK01406         86 ERLDIYKEYAEQLLEEGKAYYCYCTPEELEAMREEQRAAGEPPRYDGRCRDLTKEEVAARLAAGEPPVIRFKVPDEGEVV  165 (476)
T ss_pred             cCHHHHHHHHHHHHHcCCeeecCCCHHHHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHhCCCCeeEEEEcCCCCceE
Confidence            9543 222221       1578888877753311                   00000000  00         0  0  


Q ss_pred             ----------ccchhhh---------chHHHHHhhhh---cCCCEEEecCcchHHHHHHHHHHHHhhhhh---CC-----
Q 024523          197 ----------VGVALLT---------YPVLMASDILL---YQSDFVPVGEDQKQHLELTRELAERVNYLY---GG-----  246 (266)
Q Consensus       197 ----------i~~g~l~---------YPvLQAADIl~---l~adlvpvG~DQ~~hleLaRdiA~r~n~~y---g~-----  246 (266)
                                .+...+-         ||..+.||++-   .+.|+|..|.||..+.-.-..+.+.+|...   ..     
T Consensus       166 ~~D~i~G~~~~~~~~~~D~Vl~RsDG~ptY~~a~vVdD~~~~ithvIrG~d~~~~t~~q~~l~~alG~~~p~~~H~pli~  245 (476)
T PRK01406        166 FDDLVRGEIEFPNSELDDFVILRSDGTPTYNFAVVVDDHLMGITHVIRGEDHLSNTPKQILLYEALGWEVPVFAHLPLIL  245 (476)
T ss_pred             EEEeccceEEeccccCCCcEEEecCCCccccchHHHHHHHcCCCEEEECchhhcCHHHHHHHHHHhCCCCCeEEEeeeee
Confidence                      0001111         45555666643   478999999999999999999999998431   10     


Q ss_pred             -CcccccCCCCCce
Q 024523          247 -RKWKKLGGRGGAI  259 (266)
Q Consensus       247 -~~~~k~g~~~~~i  259 (266)
                       ..++||-||.+.+
T Consensus       246 ~~~g~klSKR~g~~  259 (476)
T PRK01406        246 GPDGKKLSKRHGAT  259 (476)
T ss_pred             CCCCCcccCcCCcc
Confidence             0156787877743

>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6

Probab=94.68  E-value=0.083  Score=51.34  Aligned_cols=77  Identities=19%  Similarity=0.252  Sum_probs=45.9

Q ss_pred             CCCCcchhhhHHHHH--HHHHHHhc--cCcEE-EEEecceeeecC-------CCHH-HHHHHHHHHHHHHHHcCcCCCce
Q 024523           86 QPTGSIHLGNYLGAI--KNWIALQN--SYETL-FFIVDLHAITLP-------YDTQ-QLSKATRETAAIYLACGIDNSKA  152 (266)
Q Consensus        86 ~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~-ilIADlhA~~~~-------~~~e-~ir~~~~~~~~~~lA~GlDp~Kt  152 (266)
                      -|.|.|||||..+.+  .-+.++++  |++++ +.=.|.|..-..       .+++ -+.++...+.+.+.++||+.+  
T Consensus         9 Y~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~~~~I~~D--   86 (391)
T PF09334_consen    9 YPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLEALNISYD--   86 (391)
T ss_dssp             ETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT---S--
T ss_pred             CCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCc--
Confidence            478999999987765  23444444  88875 456788876431       2554 456777888999999999987  


Q ss_pred             EEEEcccchhhhH
Q 024523          153 SVFVQSHVRAHVE  165 (266)
Q Consensus       153 ~if~qSd~~~~~e  165 (266)
                       .|..+.-.+|.+
T Consensus        87 -~F~rTt~~~h~~   98 (391)
T PF09334_consen   87 -RFIRTTDDRHKE   98 (391)
T ss_dssp             -EEEETTSHHHHH
T ss_pred             -ceeCCCCHHHHH
Confidence             355554444533

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....

>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase

Probab=94.29  E-value=1  Score=40.36  Aligned_cols=72  Identities=11%  Similarity=-0.000  Sum_probs=46.9

Q ss_pred             CceEEEecCCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEE-ecceeeec-C------CCH-HHHHHHHHHHHHHHHH
Q 024523           78 KKRIVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLFFI-VDLHAITL-P------YDT-QQLSKATRETAAIYLA  144 (266)
Q Consensus        78 ~~~iytGi~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~ilI-ADlhA~~~-~------~~~-e~ir~~~~~~~~~~lA  144 (266)
                      .....+|-=|-|.+||||.-..+  .-+.++++  |++|++.. .|.|..=. .      .++ +-.+++...+.+++.+
T Consensus        21 ~~~y~~gpt~y~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~~g~~p~e~~~~~~~~f~~~~~~  100 (213)
T cd00672          21 VTMYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREEGLSWKEVADYYTKEFFEDMKA  100 (213)
T ss_pred             ceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence            34556777788999999976654  33444444  78886654 35553311 0      244 4456677788889999


Q ss_pred             cCcCC
Q 024523          145 CGIDN  149 (266)
Q Consensus       145 ~GlDp  149 (266)
                      +|+.+
T Consensus       101 l~i~~  105 (213)
T cd00672         101 LNVLP  105 (213)
T ss_pred             cCCCC
Confidence            99986

Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.

>PRK00260 cysS cysteinyl-tRNA synthetase; Validated

Probab=94.10  E-value=0.2  Score=49.73  Aligned_cols=73  Identities=8%  Similarity=-0.004  Sum_probs=48.8

Q ss_pred             CceEE-EecCCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-cceee-ecC------CCHH-HHHHHHHHHHHHHH
Q 024523           78 KKRIV-SGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAI-TLP------YDTQ-QLSKATRETAAIYL  143 (266)
Q Consensus        78 ~~~iy-tGi~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~ilIA-DlhA~-~~~------~~~e-~ir~~~~~~~~~~l  143 (266)
                      ...+| +|--|.|.+||||..+.+  .-+.++++  |++|++..+ |.|.- +..      .+++ -.++++..+.+++.
T Consensus        23 ~v~~yvcgPtvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~~g~~~~e~~~~~~~~f~~~~~  102 (463)
T PRK00260         23 KVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANEEGESIKELTERYIAAFHEDMD  102 (463)
T ss_pred             cceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            45666 899999999999987655  33555554  899987765 44421 110      2343 35566778888999


Q ss_pred             HcCc-CCC
Q 024523          144 ACGI-DNS  150 (266)
Q Consensus       144 A~Gl-Dp~  150 (266)
                      ++|+ .|+
T Consensus       103 ~Lgi~~~d  110 (463)
T PRK00260        103 ALNVLPPD  110 (463)
T ss_pred             HcCCCCCC
Confidence            9999 454

>PRK12268 methionyl-tRNA synthetase; Reviewed

Probab=94.07  E-value=0.15  Score=51.33  Aligned_cols=72  Identities=22%  Similarity=0.356  Sum_probs=47.2

Q ss_pred             eEEEecCCC--CcchhhhHHHH-H--HHHHHHhc--cCcEEEEE-ecceeeec-------CCCH-HHHHHHHHHHHHHHH
Q 024523           80 RIVSGVQPT--GSIHLGNYLGA-I--KNWIALQN--SYETLFFI-VDLHAITL-------PYDT-QQLSKATRETAAIYL  143 (266)
Q Consensus        80 ~iytGi~PT--G~lHLGh~ig~-i--~k~~~LQ~--g~~v~ilI-ADlhA~~~-------~~~~-e~ir~~~~~~~~~~l  143 (266)
                      .+.+.-=|+  |.+||||..+. +  .-+.++++  |++|++.. .|.|..-.       ..++ +-.++++..+.+++.
T Consensus         5 ~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~   84 (556)
T PRK12268          5 ILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKEDFK   84 (556)
T ss_pred             EEEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            455555566  89999998865 3  23444443  88886654 46664322       0244 445777888899999


Q ss_pred             HcCcCCCc
Q 024523          144 ACGIDNSK  151 (266)
Q Consensus       144 A~GlDp~K  151 (266)
                      ++|++++.
T Consensus        85 ~l~i~~d~   92 (556)
T PRK12268         85 KLGISYDL   92 (556)
T ss_pred             HcCCcCCC
Confidence            99999873

>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6

Probab=94.03  E-value=0.075  Score=51.48  Aligned_cols=82  Identities=20%  Similarity=0.276  Sum_probs=42.8

Q ss_pred             CCCceEEEecCCCCcchhhhHHHHHHH---HHHHhc-cCcE-EEEEecceeee----------------c-CC----CHH
Q 024523           76 SVKKRIVSGVQPTGSIHLGNYLGAIKN---WIALQN-SYET-LFFIVDLHAIT----------------L-PY----DTQ  129 (266)
Q Consensus        76 ~~~~~iytGi~PTG~lHLGh~ig~i~k---~~~LQ~-g~~v-~ilIADlhA~~----------------~-~~----~~e  129 (266)
                      +.+..+-+|+.|||.+||||+--+++.   ...|++ |.++ +|+.+|+.-=+                + |.    +|.
T Consensus        22 ~~~~v~~sG~sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~~~~~ylg~Plt~VPdP~  101 (360)
T PF01921_consen   22 KEPYVFASGISPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNPELEKYLGKPLTRVPDPF  101 (360)
T ss_dssp             -SEEEEEEEE--SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC-CCCCTTSBTTTSB-TT
T ss_pred             CccEEEecCCCCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChHHHHHhcCCccccCCCCC
Confidence            346789999999999999998655522   334777 7776 67788865333                2 10    111


Q ss_pred             -----HHHHHHHHHHHHHHHcCcCCCceEEEEcccc
Q 024523          130 -----QLSKATRETAAIYLACGIDNSKASVFVQSHV  160 (266)
Q Consensus       130 -----~ir~~~~~~~~~~lA~GlDp~Kt~if~qSd~  160 (266)
                           -..++-....+.+-.+|+++   +++.|++.
T Consensus       102 G~~~SyaeH~~~~~~~~L~~~gie~---e~~s~te~  134 (360)
T PF01921_consen  102 GCHESYAEHFNAPFEEFLDEFGIEY---EFISQTEM  134 (360)
T ss_dssp             SSSSCHHHHHHHHHHHHHHTTT------EEEECCCC
T ss_pred             CCCccHHHHHHHHHHHHHHHcCCce---EEEeHHHh
Confidence                 12333444455555679865   78888884

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.

>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases

Probab=93.64  E-value=0.13  Score=48.21  Aligned_cols=80  Identities=13%  Similarity=0.146  Sum_probs=48.4

Q ss_pred             CCCcchhhhHHHHH--HHHHHHhc--cCcEEE-EEecceeeecC-------CCH-HHHHHHHHHHHHHHHHcCcCCCceE
Q 024523           87 PTGSIHLGNYLGAI--KNWIALQN--SYETLF-FIVDLHAITLP-------YDT-QQLSKATRETAAIYLACGIDNSKAS  153 (266)
Q Consensus        87 PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~i-lIADlhA~~~~-------~~~-e~ir~~~~~~~~~~lA~GlDp~Kt~  153 (266)
                      |+|.+||||..+.+  .-+.++++  |++|.+ .-.|.|..-..       .++ +-.+++..++.+++.++|+.++ ..
T Consensus        11 ~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~~lgi~~d-~~   89 (314)
T cd00812          11 PSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQLKRMGFSYD-WR   89 (314)
T ss_pred             CCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcccee-cc
Confidence            67999999988755  22444444  888744 45666643210       133 3356666778888899999775 22


Q ss_pred             EEEcccchhhhHHH
Q 024523          154 VFVQSHVRAHVELM  167 (266)
Q Consensus       154 if~qSd~~~~~eL~  167 (266)
                      .+..+..++|.+..
T Consensus        90 ~~~~t~~~~~~~~v  103 (314)
T cd00812          90 REFTTCDPEYYKFT  103 (314)
T ss_pred             cccccCCHHHHHHH
Confidence            33334455554444

Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.

>PRK00390 leuS leucyl-tRNA synthetase; Validated

Probab=93.55  E-value=0.23  Score=52.66  Aligned_cols=72  Identities=13%  Similarity=0.164  Sum_probs=49.8

Q ss_pred             CceEEEecCCC--CcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-cceeeecC-------CC-HHHHHHHHHHHHHHH
Q 024523           78 KKRIVSGVQPT--GSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAITLP-------YD-TQQLSKATRETAAIY  142 (266)
Q Consensus        78 ~~~iytGi~PT--G~lHLGh~ig~i--~k~~~LQ~--g~~v~ilIA-DlhA~~~~-------~~-~e~ir~~~~~~~~~~  142 (266)
                      ++++..|. |+  |.+|+||..+.+  .-+.++|.  |++|.+..+ |.|.+-.-       .+ .+...+++.++.+++
T Consensus        33 ~~~i~~~p-Py~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~~  111 (805)
T PRK00390         33 KYYVLDMF-PYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMKKQL  111 (805)
T ss_pred             CEEEEccC-CCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            67888886 76  999999988755  23555665  888866554 55544220       13 355677788889999


Q ss_pred             HHcCcCCC
Q 024523          143 LACGIDNS  150 (266)
Q Consensus       143 lA~GlDp~  150 (266)
                      .++|+..|
T Consensus       112 ~~lGi~~D  119 (805)
T PRK00390        112 KSLGFSYD  119 (805)
T ss_pred             HHhCCccc
Confidence            99999655

>PLN02610 probable methionyl-tRNA synthetase

Probab=93.42  E-value=0.15  Score=54.18  Aligned_cols=87  Identities=16%  Similarity=0.200  Sum_probs=54.3

Q ss_pred             CceEEEec-CCCCcchhhhHHH-HH--HHHHHHhc--cCcEEEEEe-cceeeecC-------CCH-HHHHHHHHHHHHHH
Q 024523           78 KKRIVSGV-QPTGSIHLGNYLG-AI--KNWIALQN--SYETLFFIV-DLHAITLP-------YDT-QQLSKATRETAAIY  142 (266)
Q Consensus        78 ~~~iytGi-~PTG~lHLGh~ig-~i--~k~~~LQ~--g~~v~ilIA-DlhA~~~~-------~~~-e~ir~~~~~~~~~~  142 (266)
                      ++.|-+.+ -|+|.+||||..+ .+  .-+.+++.  |++|+++.+ |-|..-..       .++ +-+.++...+.+.|
T Consensus        18 ~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~~~~~~~~   97 (801)
T PLN02610         18 NILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKYHAIHKEVY   97 (801)
T ss_pred             CEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            44444443 3679999999886 34  34666666  889877655 55655321       244 44566667788899


Q ss_pred             HHcCcCCCceEEEEcccchhhhHHH
Q 024523          143 LACGIDNSKASVFVQSHVRAHVELM  167 (266)
Q Consensus       143 lA~GlDp~Kt~if~qSd~~~~~eL~  167 (266)
                      .++||+.|   .|..+.-++|.+..
T Consensus        98 ~~l~i~~D---~f~rT~~~~h~~~v  119 (801)
T PLN02610         98 DWFDISFD---KFGRTSTPQQTEIC  119 (801)
T ss_pred             HHcCCccc---cCccCCCHHHHHHH
Confidence            99999877   23333344554443

>TIGR00398 metG methionyl-tRNA synthetase

Probab=93.11  E-value=0.17  Score=50.60  Aligned_cols=65  Identities=22%  Similarity=0.291  Sum_probs=41.8

Q ss_pred             CCCcchhhhHHHHH--HHHHHHhc--cCcEEEE-Eecceeeec-------CCCHH-HHHHHHHHHHHHHHHcCcCCCc
Q 024523           87 PTGSIHLGNYLGAI--KNWIALQN--SYETLFF-IVDLHAITL-------PYDTQ-QLSKATRETAAIYLACGIDNSK  151 (266)
Q Consensus        87 PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~il-IADlhA~~~-------~~~~e-~ir~~~~~~~~~~lA~GlDp~K  151 (266)
                      |+|.+||||..+.+  .-+.+.++  |++|.+. =.|.|..-.       ..+++ -..++...+.+++.++|++++.
T Consensus        10 ~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~~D~   87 (530)
T TIGR00398        10 ANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWKWLNISFDR   87 (530)
T ss_pred             CCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            78999999987655  23444444  8888655 445553321       02443 3455567788899999998763

The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma

>PRK11893 methionyl-tRNA synthetase; Reviewed

Probab=92.76  E-value=0.17  Score=50.06  Aligned_cols=65  Identities=15%  Similarity=0.320  Sum_probs=41.7

Q ss_pred             CCCCcchhhhHHHHH--HHHHHHhc--cCcEEEE-EecceeeecC-------CCH-HHHHHHHHHHHHHHHHcCcCCC
Q 024523           86 QPTGSIHLGNYLGAI--KNWIALQN--SYETLFF-IVDLHAITLP-------YDT-QQLSKATRETAAIYLACGIDNS  150 (266)
Q Consensus        86 ~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~il-IADlhA~~~~-------~~~-e~ir~~~~~~~~~~lA~GlDp~  150 (266)
                      -|+|.+||||..+.+  .-+.+.++  |++|.+. -.|.|..-..       .++ +-.+++..++.+++.++|++++
T Consensus        11 ~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~I~~D   88 (511)
T PRK11893         11 YPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRLWEALNISYD   88 (511)
T ss_pred             CCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence            356899999977655  33445554  8887654 4555643110       133 4456666778889999999866

>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases

Probab=92.34  E-value=0.25  Score=46.34  Aligned_cols=65  Identities=22%  Similarity=0.308  Sum_probs=41.9

Q ss_pred             CCCcchhhhHHHHH--HHHHHHhc--cCcEEEE-EecceeeecC-------CCHHH-HHHHHHHHHHHHHHcCcCCCc
Q 024523           87 PTGSIHLGNYLGAI--KNWIALQN--SYETLFF-IVDLHAITLP-------YDTQQ-LSKATRETAAIYLACGIDNSK  151 (266)
Q Consensus        87 PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~il-IADlhA~~~~-------~~~e~-ir~~~~~~~~~~lA~GlDp~K  151 (266)
                      |+|.+||||..+.+  .-+.++++  |++|++. =.|.|..-..       .++++ .+++...+.+++.++|++++.
T Consensus        11 ~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~~D~   88 (319)
T cd00814          11 VNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLFKWLNISFDY   88 (319)
T ss_pred             CCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcCCC
Confidence            45999999988755  23444444  8887654 4566644220       24443 455567788889999998763

Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.

>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases

Probab=92.18  E-value=0.17  Score=47.03  Aligned_cols=64  Identities=23%  Similarity=0.308  Sum_probs=37.4

Q ss_pred             CCCcchhhhHHHHH--HHHHHHhc--cCcEE-EEEecceeeecC------C--------------C-HHHHHHHHHHHHH
Q 024523           87 PTGSIHLGNYLGAI--KNWIALQN--SYETL-FFIVDLHAITLP------Y--------------D-TQQLSKATRETAA  140 (266)
Q Consensus        87 PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~-ilIADlhA~~~~------~--------------~-~e~ir~~~~~~~~  140 (266)
                      |+|.+||||+.+.+  .-+.++++  |++|. +.-.|.|..-..      .              + .+-++++...+.+
T Consensus        11 ~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (312)
T cd00668          11 ANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKEFVEEMSGEHKE   90 (312)
T ss_pred             CCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHH
Confidence            57999999988744  22333333  78874 445577764221      0              1 1223444455677


Q ss_pred             HHHHcCcCCC
Q 024523          141 IYLACGIDNS  150 (266)
Q Consensus       141 ~~lA~GlDp~  150 (266)
                      ++.++|++.+
T Consensus        91 ~l~~lgI~~D  100 (312)
T cd00668          91 DFRRLGISYD  100 (312)
T ss_pred             HHHHhCcccc
Confidence            7888898654

Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.

>PRK12267 methionyl-tRNA synthetase; Reviewed

Probab=92.08  E-value=0.34  Score=49.91  Aligned_cols=64  Identities=16%  Similarity=0.299  Sum_probs=42.9

Q ss_pred             CCCcchhhhHHHHH--HHHHHHhc--cCcEEE-EEecceeeecC-------CCH-HHHHHHHHHHHHHHHHcCcCCC
Q 024523           87 PTGSIHLGNYLGAI--KNWIALQN--SYETLF-FIVDLHAITLP-------YDT-QQLSKATRETAAIYLACGIDNS  150 (266)
Q Consensus        87 PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~i-lIADlhA~~~~-------~~~-e~ir~~~~~~~~~~lA~GlDp~  150 (266)
                      |+|.+||||..+.+  .-+.++++  |+++++ .-.|.|..-..       .++ +-+.++...+.+++.++|++++
T Consensus        15 ~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~l~~lgI~~D   91 (648)
T PRK12267         15 PNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKELWKKLDISYD   91 (648)
T ss_pred             CCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            56999999987755  33555554  888755 46677754221       244 3455666778889999999876

>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases

Probab=91.55  E-value=0.38  Score=45.63  Aligned_cols=36  Identities=22%  Similarity=0.172  Sum_probs=24.0

Q ss_pred             CCCcchhhhHHHHH--HHHHHHhc--cCcEEE-EEecceee
Q 024523           87 PTGSIHLGNYLGAI--KNWIALQN--SYETLF-FIVDLHAI  122 (266)
Q Consensus        87 PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~i-lIADlhA~  122 (266)
                      |+|.+||||..+.+  .-+.++++  |++|.+ .-.|.|.+
T Consensus        12 vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~   52 (338)
T cd00818          12 ANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGL   52 (338)
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCc
Confidence            56999999988754  33445554  888854 45566554

Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.

>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]

Probab=91.37  E-value=0.24  Score=49.95  Aligned_cols=81  Identities=22%  Similarity=0.371  Sum_probs=52.8

Q ss_pred             CCceEEEecCCCCcchhhhHHHHHHH---HHHHhc-cCcE-EEEEecceeeec--CC---CHHHHHH-------------
Q 024523           77 VKKRIVSGVQPTGSIHLGNYLGAIKN---WIALQN-SYET-LFFIVDLHAITL--PY---DTQQLSK-------------  133 (266)
Q Consensus        77 ~~~~iytGi~PTG~lHLGh~ig~i~k---~~~LQ~-g~~v-~ilIADlhA~~~--~~---~~e~ir~-------------  133 (266)
                      ...++=||+.|||.+||||+-=.++.   ...|.+ |+++ +|+++|.+.=+.  |.   +++.+.+             
T Consensus        19 ~~~~v~tGisPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP~   98 (521)
T COG1384          19 DEYVVATGISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDPF   98 (521)
T ss_pred             CcEEEecCcCCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHcCCccccCCCCc
Confidence            56789999999999999997533321   223555 7876 788999987665  21   2333332             


Q ss_pred             -----HHHHH----HHHHHHcCcCCCceEEEEcccc
Q 024523          134 -----ATRET----AAIYLACGIDNSKASVFVQSHV  160 (266)
Q Consensus       134 -----~~~~~----~~~~lA~GlDp~Kt~if~qSd~  160 (266)
                           .++.+    .+.+--+|+++   +++.+|+.
T Consensus        99 G~~~Sya~hf~~~f~~~l~~~Gi~~---E~~s~se~  131 (521)
T COG1384          99 GCCDSYAEHFLRPFEEFLDEFGIEV---EFVSATEL  131 (521)
T ss_pred             cccchHHHHHHHHHHHHHHhcCCce---EEEEhHHh
Confidence                 33333    33444578875   68888874

>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases

Probab=91.02  E-value=0.5  Score=45.63  Aligned_cols=64  Identities=17%  Similarity=0.196  Sum_probs=38.5

Q ss_pred             CCCcchhhhHHHHH--HHHHHHhc--cCcEEEE-Eecceeee---------c-C------CCHHH--------HHHHHHH
Q 024523           87 PTGSIHLGNYLGAI--KNWIALQN--SYETLFF-IVDLHAIT---------L-P------YDTQQ--------LSKATRE  137 (266)
Q Consensus        87 PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~il-IADlhA~~---------~-~------~~~e~--------ir~~~~~  137 (266)
                      |+|.+||||..+.+  .-+.+++.  |++|++. =.|.|.+-         . .      .++++        .+++...
T Consensus        12 ~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (382)
T cd00817          12 VTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEKCWEWKEESGGK   91 (382)
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHHHHHHHHHHHHHH
Confidence            57999999988755  33555555  8888655 45666331         1 0      12232        2344455


Q ss_pred             HHHHHHHcCcCCC
Q 024523          138 TAAIYLACGIDNS  150 (266)
Q Consensus       138 ~~~~~lA~GlDp~  150 (266)
                      +.+++.++|+..+
T Consensus        92 ~~~~~~~lgi~~D  104 (382)
T cd00817          92 IREQLKRLGASVD  104 (382)
T ss_pred             HHHHHHHhCceee
Confidence            6777778897543

Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.

>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional

Probab=90.61  E-value=1.6  Score=44.01  Aligned_cols=74  Identities=15%  Similarity=0.094  Sum_probs=44.9

Q ss_pred             CCCceEEE-ecCCCCcchhhhHHHHH--HHHHHHhc--cCcEEEE--Eecceeeec----------------CCCH-HHH
Q 024523           76 SVKKRIVS-GVQPTGSIHLGNYLGAI--KNWIALQN--SYETLFF--IVDLHAITL----------------PYDT-QQL  131 (266)
Q Consensus        76 ~~~~~iyt-Gi~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~il--IADlhA~~~----------------~~~~-e~i  131 (266)
                      +...++|+ |--+-+.+||||...++  .-+.++.+  |++|++.  |+|.--++.                ..++ +-.
T Consensus        21 ~~~v~mYvCGpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~~g~~~~e~a  100 (490)
T PRK14536         21 HGHVRLYGCGPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKSVLEIA  100 (490)
T ss_pred             CCceEEEeeCCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHHHHHHHHcCCCHHHHH
Confidence            34556654 44444789999987755  33444444  8888766  677711111                0133 344


Q ss_pred             HHHHHHHHHHHHHcCcCC
Q 024523          132 SKATRETAAIYLACGIDN  149 (266)
Q Consensus       132 r~~~~~~~~~~lA~GlDp  149 (266)
                      +++...+.+++.++|+.+
T Consensus       101 ~~~~~~f~~d~~~Lni~~  118 (490)
T PRK14536        101 AHYTAAFFRDTARLNIER  118 (490)
T ss_pred             HHHHHHHHHHHHHcCCCC
Confidence            556667788888899865

>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family

Probab=90.33  E-value=0.66  Score=49.49  Aligned_cols=73  Identities=15%  Similarity=0.174  Sum_probs=48.0

Q ss_pred             CceEEEec-CCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-cceeeec------C-CC-HHHHHHHHHHHHHHHH
Q 024523           78 KKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAITL------P-YD-TQQLSKATRETAAIYL  143 (266)
Q Consensus        78 ~~~iytGi-~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~ilIA-DlhA~~~------~-~~-~e~ir~~~~~~~~~~l  143 (266)
                      ++++..|+ -|||.+|+||..+.+  .-+.+++.  |++|.+..+ |.|.+-.      . .+ .+...+++.++.+++.
T Consensus        30 k~~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~~~~~~~  109 (842)
T TIGR00396        30 KYYILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIANMKKQLQ  109 (842)
T ss_pred             CEEEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            45666663 245999999988754  33555565  899876655 4454421      0 12 3556778888899999


Q ss_pred             HcCcCCC
Q 024523          144 ACGIDNS  150 (266)
Q Consensus       144 A~GlDp~  150 (266)
                      ++|+..|
T Consensus       110 ~lG~~~D  116 (842)
T TIGR00396       110 ALGFSYD  116 (842)
T ss_pred             HhCCccc
Confidence            9997544

The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.

>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=89.36  E-value=0.62  Score=49.61  Aligned_cols=73  Identities=16%  Similarity=0.164  Sum_probs=50.8

Q ss_pred             CCceEEEec-CCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEecceeeecC---------CCH-HHHHHHHHHHHHH
Q 024523           77 VKKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIVDLHAITLP---------YDT-QQLSKATRETAAI  141 (266)
Q Consensus        77 ~~~~iytGi-~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~ilIADlhA~~~~---------~~~-e~ir~~~~~~~~~  141 (266)
                      ++++|..-| -|||.||+||..+..  .-+.+++.  |++|.+-++ |||+=.|         .+| .-...|+.++.++
T Consensus        34 ~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMG-wdafGlPae~~A~~~~~~P~~wt~~ni~~~k~q  112 (814)
T COG0495          34 EKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMG-WDAFGLPAENAAIKIGTDPAKWTYYNIAYMKKQ  112 (814)
T ss_pred             CceEEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCc-ccccCchHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence            466776666 599999999965422  22333444  788877765 8877445         244 4578888999999


Q ss_pred             HHHcCcCCC
Q 024523          142 YLACGIDNS  150 (266)
Q Consensus       142 ~lA~GlDp~  150 (266)
                      +.++|+.-|
T Consensus       113 lk~lG~siD  121 (814)
T COG0495         113 LKSLGFSID  121 (814)
T ss_pred             HHHhCCccc
Confidence            999998654

>TIGR00435 cysS cysteinyl-tRNA synthetase

Probab=88.24  E-value=2.1  Score=42.70  Aligned_cols=72  Identities=13%  Similarity=-0.043  Sum_probs=46.5

Q ss_pred             ceEEEecCCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-cceee-e-c-----CCCHH-HHHHHHHHHHHHHHHc
Q 024523           79 KRIVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAI-T-L-----PYDTQ-QLSKATRETAAIYLAC  145 (266)
Q Consensus        79 ~~iytGi~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~ilIA-DlhA~-~-~-----~~~~e-~ir~~~~~~~~~~lA~  145 (266)
                      ....+|--|.+.+||||..+++  .-+.++++  |++|.+..+ |.|.- + .     ..+++ -.+.+...+.+++.++
T Consensus        23 ~~yvcgptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~g~~~~e~a~~~~~~f~~dl~~L  102 (465)
T TIGR00435        23 KMYVCGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRARENGESVYEVSERFIEAYFEDMKAL  102 (465)
T ss_pred             eEEEecCccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence            4456788888999999987755  33445444  889866544 66532 1 1     02443 3456667788888899


Q ss_pred             CcCCC
Q 024523          146 GIDNS  150 (266)
Q Consensus       146 GlDp~  150 (266)
                      |+.++
T Consensus       103 gI~~d  107 (465)
T TIGR00435       103 NVLPP  107 (465)
T ss_pred             CCCCC
Confidence            98744

This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).

>PRK13208 valS valyl-tRNA synthetase; Reviewed

Probab=86.77  E-value=1.3  Score=46.75  Aligned_cols=74  Identities=14%  Similarity=0.155  Sum_probs=44.1

Q ss_pred             CCceEEE-ecCCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-cceee---------ec--CC--CH--------H
Q 024523           77 VKKRIVS-GVQPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAI---------TL--PY--DT--------Q  129 (266)
Q Consensus        77 ~~~~iyt-Gi~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~ilIA-DlhA~---------~~--~~--~~--------e  129 (266)
                      +++.+.+ .--|+|.+||||..+.+  .-+.+++.  |++|.+..+ |-|.+         .+  +.  +.        +
T Consensus        38 ~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~~g~~~~~~~~~~f~~~~~~  117 (800)
T PRK13208         38 PVYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYGIRKDDISREEFIELCRE  117 (800)
T ss_pred             CcEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCCCcchHHHHHHHHhCCCcccCCHHHHHHHHHH
Confidence            3456666 34578999999988755  23555555  889877655 44432         12  11  11        1


Q ss_pred             HHHHHHHHHHHHHHHcCcCCC
Q 024523          130 QLSKATRETAAIYLACGIDNS  150 (266)
Q Consensus       130 ~ir~~~~~~~~~~lA~GlDp~  150 (266)
                      -..+++..+.+++.++|+..|
T Consensus       118 ~~~~~~~~~~~~~~~lg~s~D  138 (800)
T PRK13208        118 LTDEDEKKFRELWRRLGLSVD  138 (800)
T ss_pred             HHHHHHHHHHHHHHHhCeeec
Confidence            233445567778888887544

>PLN02563 aminoacyl-tRNA ligase

Probab=86.69  E-value=2.1  Score=46.50  Aligned_cols=74  Identities=15%  Similarity=0.170  Sum_probs=48.4

Q ss_pred             CCceEEEec-CCCCc-chhhhHHHHH--HHHHHHhc--cCcEEEEEe-cceeeec-C------CCH-HHHHHHHHHHHHH
Q 024523           77 VKKRIVSGV-QPTGS-IHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAITL-P------YDT-QQLSKATRETAAI  141 (266)
Q Consensus        77 ~~~~iytGi-~PTG~-lHLGh~ig~i--~k~~~LQ~--g~~v~ilIA-DlhA~~~-~------~~~-e~ir~~~~~~~~~  141 (266)
                      +++++.+|+ -|+|. +|+||....+  .-+.+++.  |++|++..+ |-|.+-. .      ..+ +...+++..+.++
T Consensus       110 ~k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~~~~q  189 (963)
T PLN02563        110 PKFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFRSQ  189 (963)
T ss_pred             CCEEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHHHHHH
Confidence            346777776 45697 9999987644  33555665  899876655 4555522 1      122 4567778888899


Q ss_pred             HHHcCcCCC
Q 024523          142 YLACGIDNS  150 (266)
Q Consensus       142 ~lA~GlDp~  150 (266)
                      +..+|+..|
T Consensus       190 ~~~lG~s~D  198 (963)
T PLN02563        190 LKSLGFSYD  198 (963)
T ss_pred             HHHhCcEee
Confidence            999996433

>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=86.08  E-value=2.2  Score=43.77  Aligned_cols=73  Identities=19%  Similarity=0.324  Sum_probs=43.0

Q ss_pred             eEEEec--CCCCcchhhhHHHHHHHHHHHhccCc-EEEEEecceeeecCC-CHHHHHHHHHHHHHHHHHcCcCCCceEEE
Q 024523           80 RIVSGV--QPTGSIHLGNYLGAIKNWIALQNSYE-TLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGIDNSKASVF  155 (266)
Q Consensus        80 ~iytGi--~PTG~lHLGh~ig~i~k~~~LQ~g~~-v~ilIADlhA~~~~~-~~e~ir~~~~~~~~~~lA~GlDp~Kt~if  155 (266)
                      .+.+-|  ||||.+||||.--++-++. +|..++ -.|+==|++   +|. +.++.++.+   .+++--+||.|++.  -
T Consensus       200 kVv~RFPPEpSGyLHIGHAKAALLNqY-fa~~~~G~LIvRFDDT---NPaKE~~eFe~~I---leDl~~LgIkpd~~--T  270 (712)
T KOG1147|consen  200 KVVTRFPPEPSGYLHIGHAKAALLNQY-FAQAYQGKLIVRFDDT---NPAKENEEFEDVI---LEDLSLLGIKPDRV--T  270 (712)
T ss_pred             ceEEecCCCCCceeehhhHHHHHHHHH-HHHhcCceEEEEecCC---CcchhhHHHHHHH---HHHHHHhCcCccee--e
Confidence            344444  7889999999877775553 454333 334434443   442 344455444   44555689999853  4


Q ss_pred             Ecccch
Q 024523          156 VQSHVR  161 (266)
Q Consensus       156 ~qSd~~  161 (266)
                      .-||+.
T Consensus       271 yTSDyF  276 (712)
T KOG1147|consen  271 YTSDYF  276 (712)
T ss_pred             echhhH
Confidence            457754

>PLN02946 cysteine-tRNA ligase

Probab=85.22  E-value=4.5  Score=41.49  Aligned_cols=71  Identities=13%  Similarity=-0.041  Sum_probs=43.5

Q ss_pred             CCceEEEecCCC--CcchhhhHHHHH--HHHHHHhc--cCcEEEE-Eeccee--eecC-----CCH-HHHHHHHHHHHHH
Q 024523           77 VKKRIVSGVQPT--GSIHLGNYLGAI--KNWIALQN--SYETLFF-IVDLHA--ITLP-----YDT-QQLSKATRETAAI  141 (266)
Q Consensus        77 ~~~~iytGi~PT--G~lHLGh~ig~i--~k~~~LQ~--g~~v~il-IADlhA--~~~~-----~~~-e~ir~~~~~~~~~  141 (266)
                      ....+|+ .+||  +.+||||..+++  .-+.++.+  |++|.+. -.|.|.  ++..     .++ +-.++++.++.++
T Consensus        79 ~~v~~Y~-CGpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~~g~~~~ela~~y~~~f~~d  157 (557)
T PLN02946         79 GKVGMYV-CGVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFLSD  157 (557)
T ss_pred             CceeEEE-eCCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            3455553 3566  789999987755  33555444  8887654 333332  2211     244 4456667788888


Q ss_pred             HHHcCcC
Q 024523          142 YLACGID  148 (266)
Q Consensus       142 ~lA~GlD  148 (266)
                      +.++|+.
T Consensus       158 ~~~LnI~  164 (557)
T PLN02946        158 MAYLHCL  164 (557)
T ss_pred             HHHCCCC
Confidence            8899885

>TIGR00422 valS valyl-tRNA synthetase

Probab=84.57  E-value=1.4  Score=47.02  Aligned_cols=45  Identities=24%  Similarity=0.208  Sum_probs=30.2

Q ss_pred             CCceEEEec-CCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEeccee
Q 024523           77 VKKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIVDLHA  121 (266)
Q Consensus        77 ~~~~iytGi-~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~ilIADlhA  121 (266)
                      +++.|++|. -+||.+|+||.+...  .-+.+++.  |++|.+..+-+|+
T Consensus        33 ~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~   82 (861)
T TIGR00422        33 PPFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHA   82 (861)
T ss_pred             CeEEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCcC
Confidence            346666654 467999999988644  23555555  8898776665554

The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.

>PTZ00419 valyl-tRNA synthetase-like protein; Provisional

Probab=84.50  E-value=1.2  Score=48.30  Aligned_cols=46  Identities=30%  Similarity=0.303  Sum_probs=30.2

Q ss_pred             CCceEEEec-CCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-cceee
Q 024523           77 VKKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAI  122 (266)
Q Consensus        77 ~~~~iytGi-~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~ilIA-DlhA~  122 (266)
                      +++.|.+|. -|||.+|+||.+...  .-+.+++.  |++|.+..+ |-|++
T Consensus        60 ~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl  111 (995)
T PTZ00419         60 KKFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAGI  111 (995)
T ss_pred             CeEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCch
Confidence            345666654 368999999988644  33556665  899876655 44444

>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=84.47  E-value=1.1  Score=47.99  Aligned_cols=64  Identities=17%  Similarity=0.185  Sum_probs=42.9

Q ss_pred             CCCcchhhhHHH--HHHHHHHHhc--cCcEEEEEecceeeecC---------------C--CHHHH--------HHHHHH
Q 024523           87 PTGSIHLGNYLG--AIKNWIALQN--SYETLFFIVDLHAITLP---------------Y--DTQQL--------SKATRE  137 (266)
Q Consensus        87 PTG~lHLGh~ig--~i~k~~~LQ~--g~~v~ilIADlhA~~~~---------------~--~~e~i--------r~~~~~  137 (266)
                      +||.+|+||.+.  .+..+.+++.  |+++.++-+=+||=+--               .  .-|+.        .++...
T Consensus        44 VTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~DhAGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~~weWk~e~~~~  123 (877)
T COG0525          44 VTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHAGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEESGGT  123 (877)
T ss_pred             CCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHH
Confidence            499999999864  2355666666  89999998888886531               1  12222        333345


Q ss_pred             HHHHHHHcCcCCC
Q 024523          138 TAAIYLACGIDNS  150 (266)
Q Consensus       138 ~~~~~lA~GlDp~  150 (266)
                      +..++..+|+..|
T Consensus       124 I~~Q~~rLG~S~D  136 (877)
T COG0525         124 IREQLRRLGVSVD  136 (877)
T ss_pred             HHHHHHHhCCCcc
Confidence            6778888887655

>PLN02943 aminoacyl-tRNA ligase

Probab=83.46  E-value=1.4  Score=47.67  Aligned_cols=45  Identities=22%  Similarity=0.158  Sum_probs=30.2

Q ss_pred             CCceEEEe-cCCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEeccee
Q 024523           77 VKKRIVSG-VQPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIVDLHA  121 (266)
Q Consensus        77 ~~~~iytG-i~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~ilIADlhA  121 (266)
                      +++.+..| =-+||.+|+||.+...  .-+.+++.  |++|.+..+=+|+
T Consensus        88 ~~f~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~  137 (958)
T PLN02943         88 DPFVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHA  137 (958)
T ss_pred             CCEEEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCcc
Confidence            34666666 5679999999987633  23445554  8998776555554

>PRK05729 valS valyl-tRNA synthetase; Reviewed

Probab=80.50  E-value=2.1  Score=45.83  Aligned_cols=44  Identities=32%  Similarity=0.387  Sum_probs=28.0

Q ss_pred             CceEEEec-CCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEeccee
Q 024523           78 KKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIVDLHA  121 (266)
Q Consensus        78 ~~~iytGi-~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~ilIADlhA  121 (266)
                      ++.+.+|. -+||.+|+||.+...  .-+.+++.  |+++.+.-+-+|+
T Consensus        37 ~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~   85 (874)
T PRK05729         37 PFSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDHA   85 (874)
T ss_pred             CEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCcc
Confidence            45555543 357999999988644  23555555  8888666554444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	266
3n9i_A	346	Crystal Structure Of Tryptophanyl-Trna Synthetase F		2e-49
3prh_A	388	Tryptophanyl-Trna Synthetase Val144pro Mutant From		1e-48
1i6m_A	328	1.7 High Resolution Experimental Phases For Tryptop		1e-47
2el7_A	337	Crystal Structure Of Tryptophanyl-Trna Synthetase F		5e-46
1i6k_A	328	1.7 High Resolution Experimental Phases For Tryptop		1e-45
3fi0_A	326	Crystal Structure Analysis Of B. Stearothermophilus		1e-45
1d2r_A	326	2.9 A Crystal Structure Of Ligand-Free Tryptophanyl		1e-44
3sz3_A	341	Crystal Structure Of Tryptophanyl-Trna Synthetase F		9e-44
3fhj_D	287	Independent Saturation Of Three Trprs Subsites Gene		4e-41
3fhj_F	297	Independent Saturation Of Three Trprs Subsites Gene		5e-41
3fhj_B	292	Independent Saturation Of Three Trprs Subsites Gene		6e-38
3fhj_A	300	Independent Saturation Of Three Trprs Subsites Gene		6e-38
3fhj_E	293	Independent Saturation Of Three Trprs Subsites Gene		7e-38
3fhj_C	280	Independent Saturation Of Three Trprs Subsites Gene		7e-38
2yy5_A	348	Crystal Structure Of Tryptophanyl-Trna Synthetase F		2e-37
2g36_A	340	Crystal Structure Of Tryptophanyl-Trna Synthetase (		2e-35
3u1v_A	338	X-Ray Structure Of De Novo Design Cysteine Esterase		1e-33
3m5w_A	322	Crystal Structure Of Tryptophanyl-Trna Synthetase F		6e-33
2a4m_A	331	Structure Of Trprs Ii Bound To Atp Length = 331		1e-21
1yi8_B	351	Crystal Structure Of Tryptophanyl Trrna Synthetase		8e-21
2cyb_A	323	Crystal Structure Of Tyrosyl-Trna Synthetase Comple		4e-07
1j1u_A	306	Crystal Structure Of Archaeal Tyrosyl-Trna Syntheta		4e-06
3a04_A	372	Crystal Structure Of Tryptophanyl-Trna Synthetase F		5e-06
3n2y_A	314	Crystal Structure Of Tyrosyl-Trna Synthetase Comple		5e-05
2ag6_A	314	Crystal Structure Of P-Bromo-L-Phenylalanine-Trna S		7e-05
1zh0_A	314	Crystal Structure Of L-3-(2-Napthyl)alanine-Trna Sy		1e-04
1u7x_A	312	Crystal Structure Of A Mutant M. Jannashii Tyrosyl-		2e-04
1zh6_A	314	Crystal Structure Of P-Acetylphenylalanine-Trna Syn		2e-04
2hgz_A	306	Crystal Structure Of A P-Benzoyl-L-Phenylalanyl-Trn		7e-04
3qe4_A	312	An Evolved Aminoacyl-Trna Synthetase With Atypical		8e-04
3d6u_A	314	Crystal Structure Of 4-(Trifluoromethyldiazirinyl)		8e-04

>pdb|3N9I|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From Yersinia Pestis Co92 Length = 346

Iteration: 1
 Score =  192 bits (488), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 91/178 (51%), Positives = 124/178 (69%), Gaps = 1/178 (0%)
Query: 64  LSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAIT 123
           +SEP      + S K  + SG QP+G + +GNY+GA++ W+ +Q+ Y+ ++ IVDLHAIT
Sbjct: 1   MSEPMVLSKPTVSSKPIVFSGAQPSGELTIGNYMGALRQWVQMQDDYDCIYCIVDLHAIT 60
Query: 124 LPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMI 183
              D   L K T +T A+YLACGID  K+++FVQSHV  H +L W L+  T  G L++M 
Sbjct: 61  ARQDPALLRKRTLDTLALYLACGIDPKKSTIFVQSHVPEHSQLSWALNCYTYFGELSRMT 120
Query: 184 QFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVN 241
           QFK+KS +   EN+   L  YPVLMA+DILLYQ++ VPVGEDQKQHLEL+R++A R N
Sbjct: 121 QFKDKSARY-AENINAGLFDYPVLMAADILLYQTNQVPVGEDQKQHLELSRDIASRFN 177

>pdb|3PRH|A Chain A, Tryptophanyl-Trna Synthetase Val144pro Mutant From B. Subtilis Length = 388

Iteration: 1
 Score =  189 bits (480), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 92/166 (55%), Positives = 118/166 (71%), Gaps = 2/166 (1%)
Query: 76  SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKAT 135
           ++K+ I SG+QP+GS+ LGNY+GA+K ++ LQ+ Y + F IVD HAIT+P D  +L K  
Sbjct: 33  TMKQTIFSGIQPSGSVTLGNYIGAMKQFVELQHDYNSYFCIVDQHAITVPQDRLELRKNI 92
Query: 136 RETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGE 195
           R  AA+YLA G+D  KA++F+QS V AH +  W++     IG L +M QFK+KS   G E
Sbjct: 93  RNLAALYLAVGLDPEKATLFIQSEVPAHAQAGWMMQCVAYIGELERMTQFKDKSK--GNE 150
Query: 196 NVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVN 241
            V   LLTYP LMA+DILLY +D VP GEDQKQHLELTR LAER N
Sbjct: 151 AVVSGLLTYPPLMAADILLYGTDLVPPGEDQKQHLELTRNLAERFN 196

>pdb|1I6M|A Chain A, 1.7 High Resolution Experimental Phases For Tryptophanyl-Trna Synthetase Complexed With Tryptophanyl-5'amp Length = 328

Iteration: 1
 Score =  186 bits (472), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 91/163 (55%), Positives = 116/163 (71%), Gaps = 2/163 (1%)
Query: 79  KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
           K I SG+QP+G I +GNY+GA++ ++ LQ+ Y   F IVD HAIT+  D  +L +  R  
Sbjct: 2   KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 61
Query: 139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
           AA+YLA GID ++A++F+QS V AH +  W+L     IG L +M QFKEKS  AG E V 
Sbjct: 62  AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKS--AGKEAVS 119
Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVN 241
             LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N
Sbjct: 120 AGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFN 162

>pdb|2EL7|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From Thermus Thermophilus Length = 337

Iteration: 1
 Score =  181 bits (458), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 88/167 (52%), Positives = 117/167 (70%), Gaps = 6/167 (3%)
Query: 79  KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSY--ETLFFIVDLHAITLP--YDTQQLSKA 134
           KR++SG+QP+G IH+GNYLGAIK W+A+      +  F IVD HA+T P  YD   L++ 
Sbjct: 2   KRVLSGIQPSGEIHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDPSTLAQR 61
Query: 135 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 194
           T E A + +A G+D  K ++FVQSHV  H EL W+ ++ TP+G L +M QFK+K+ K   
Sbjct: 62  TFEAALVNIAAGLDPEKVTLFVQSHVPEHTELSWVFTTLTPLGDLTRMTQFKDKASKQ-- 119
Query: 195 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVN 241
           E V   LL YPVL A+DIL+Y++D VPVGEDQ QH+ELTRE+A R N
Sbjct: 120 ETVWSGLLMYPVLQAADILIYKADTVPVGEDQVQHIELTREIARRFN 166

>pdb|1I6K|A Chain A, 1.7 High Resolution Experimental Phases For Tryptophanyl-Trna Synthetase Complexed With Tryptophanyl-5'amp Length = 328

Iteration: 1
 Score =  179 bits (455), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 89/163 (54%), Positives = 113/163 (69%), Gaps = 2/163 (1%)
Query: 79  KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
           K I SG+QP+G I +GNY+GA++ ++ LQ+ Y   F IVD HAIT+  D  +L +  R  
Sbjct: 2   KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 61
Query: 139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
           AA+YLA GID ++A++F+QS V AH +  W L     IG L +  QFKEKS  AG E V 
Sbjct: 62  AALYLAVGIDPTQATLFIQSEVPAHAQAAWXLQCIVYIGELERXTQFKEKS--AGKEAVS 119
Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVN 241
             LLTYP L A+DILLY +D VPVGEDQKQH+ELTR+LAER N
Sbjct: 120 AGLLTYPPLXAADILLYNTDIVPVGEDQKQHIELTRDLAERFN 162

>pdb|3FI0|A Chain A, Crystal Structure Analysis Of B. Stearothermophilus Tryptophanyl-Trna Synthetase Complexed With Tryptophan, Amp, And Inorganic Phosphate Length = 326

Iteration: 1
 Score =  179 bits (454), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 89/163 (54%), Positives = 113/163 (69%), Gaps = 2/163 (1%)
Query: 79  KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
           K I SG+QP+G I +GNY+GA++ ++ LQ+ Y   F IVD HAIT+  D  +L +  R  
Sbjct: 2   KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 61
Query: 139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
           AA+YLA GID ++A++F+QS V AH +  W L     IG L +  QFKEKS  AG E V 
Sbjct: 62  AALYLAVGIDPTQATLFIQSEVPAHAQAAWXLQCIVYIGELERXTQFKEKS--AGKEAVS 119
Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVN 241
             LLTYP L A+DILLY +D VPVGEDQKQH+ELTR+LAER N
Sbjct: 120 AGLLTYPPLXAADILLYNTDIVPVGEDQKQHIELTRDLAERFN 162

>pdb|1D2R|A Chain A, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna Synthetase: Domain Movements Fragment The Adenine Nucleotide Binding Site. Length = 326

Iteration: 1
 Score =  176 bits (447), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 88/163 (53%), Positives = 113/163 (69%), Gaps = 2/163 (1%)
Query: 79  KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
           K I SG+QP+G I +GNY+GA++ ++ LQ+ Y   F IVD HAIT+  D  +L +  R  
Sbjct: 2   KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 61
Query: 139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
           AA+YLA GID ++A++F+QS V AH +  W+L     IG L +M QFKEKS  A      
Sbjct: 62  AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKSAGA--AAAA 119
Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVN 241
             LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N
Sbjct: 120 AGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFN 162

>pdb|3SZ3|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From Vibrio Cholerae With An Endogenous Tryptophan Length = 341

Iteration: 1
 Score =  173 bits (438), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 84/169 (49%), Positives = 118/169 (69%), Gaps = 1/169 (0%)
Query: 73  SSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLS 132
           S++  K  ++SGVQP+G + +GNYLGA++ W  +Q+ Y+  + +VDLHAIT+  D Q L 
Sbjct: 1   SNAMSKPIVLSGVQPSGELSIGNYLGALRQWQQMQDDYDCQYCVVDLHAITVRQDPQALH 60
Query: 133 KATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA 192
           +AT +  AI LA G+D  K+++FVQSHV  H +L W+L+  T +G L++M QFK+KS + 
Sbjct: 61  EATLDALAICLAVGVDPKKSTLFVQSHVPEHAQLGWVLNCYTQMGELSRMTQFKDKSARY 120
Query: 193 GGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVN 241
             + V   L  YPVLMA+DILLY +  VPVG DQKQHLEL R++A R N
Sbjct: 121 AND-VNAGLFGYPVLMAADILLYGAHQVPVGSDQKQHLELARDIATRFN 168

>pdb|2YY5|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From Mycoplasma Pneumoniae Length = 348

Iteration: 1
 Score =  152 bits (384), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 75/167 (44%), Positives = 104/167 (62%), Gaps = 5/167 (2%)
Query: 79  KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
           KR ++G+Q +G  HLGNYLG +++ I LQ   +   F+ DLH+IT+ +  Q L +   + 
Sbjct: 5   KRALTGIQASGKQHLGNYLGVMQSLIELQEQCQLFVFVADLHSITVDFQPQALKQNNFDL 64
Query: 139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA-----G 193
               LA G+D  KA +F+QS +  H  + +L+   + +G L +M QFK K  +      G
Sbjct: 65  VRTLLAVGLDPQKACLFLQSDLLEHSMMGYLMMVQSNLGELQRMTQFKAKKAEQTRNPNG 124
Query: 194 GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERV 240
             N+   LLTYP LMA DILLYQ D VPVG DQKQHLELTR+LA+R+
Sbjct: 125 TLNIPTGLLTYPALMAGDILLYQPDIVPVGNDQKQHLELTRDLAQRI 171

>pdb|2G36|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase (Ec 6.1.1.2) (Tryptophan-Trna Ligase)(Trprs) (Tm0492) From Thermotoga Maritima At 2.50 A Resolution Length = 340

Iteration: 1
 Score =  145 bits (366), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 73/165 (44%), Positives = 108/165 (65%), Gaps = 3/165 (1%)
Query: 80  RIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYD-TQQLSKATRE 137
           RI+SG++PTG +H+G+ +GA++NW+ LQ    E  +F+ D HA+T  YD   +L + TR+
Sbjct: 14  RILSGMRPTGKLHIGHLVGALENWVKLQEEGNECFYFVADWHALTTHYDDVSKLKEYTRD 73
Query: 138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 197
               +LACGID  K+ +FVQS V+ H EL  L S    +  L ++  +KE   +   +++
Sbjct: 74  LVRGFLACGIDPEKSVIFVQSGVKEHAELALLFSMIVSVSRLERVPTYKEIKSELNYKDL 133
Query: 198 GVA-LLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVN 241
             A  L YPVL A+DIL+Y+++ VPVGEDQ  H+ELTRE+A R N
Sbjct: 134 STAGFLIYPVLQAADILIYKAEGVPVGEDQVYHIELTREIARRFN 178

>pdb|3U1V|A Chain A, X-Ray Structure Of De Novo Design Cysteine Esterase Fr29, Northeast Structural Genomics Consortium Target Or52 Length = 338

Iteration: 1
 Score =  140 bits (352), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 76/163 (46%), Positives = 100/163 (61%), Gaps = 2/163 (1%)
Query: 79  KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
           K I S + PTG I +G Y+GA++ ++ LQ+ Y   F I D  AIT+  D  +L +  R  
Sbjct: 2   KTIFSAICPTGVITIGRYIGALRQFVELQHEYNCYFCIADQSAITVWQDPHELRQNIRRL 61
Query: 139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
           AA+YLA GID ++A++F+ S V AH +  W L     IG L +   FKE S  AG E V 
Sbjct: 62  AALYLAVGIDPTQATLFIASEVPAHAQAAWXLQCIVYIGELERXTLFKELS--AGKEAVS 119
Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVN 241
             LLT+P + A+ ILLY +D VPVGE  KQ  ELTR+LAER N
Sbjct: 120 AGLLTHPPIYAAXILLYNTDIVPVGEYGKQLYELTRDLAERFN 162

>pdb|3M5W|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From Campylobacter Jejuni Length = 322

Iteration: 1
 Score =  137 bits (345), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 67/162 (41%), Positives = 103/162 (63%), Gaps = 2/162 (1%)
Query: 80  RIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETA 139
           R+++G+QP+G +H+GNY GAIK  +  Q   +   FI + HA T   D ++L + + + A
Sbjct: 5   RVLTGLQPSGDLHIGNYFGAIKQXVDAQEKSQXFXFIANYHAXTSSQDGEKLKQNSLKAA 64
Query: 140 AIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGV 199
           A +L+ GID  K+  ++QS V+   EL W+LS  TP G L +   +K+K   A G +   
Sbjct: 65  AAFLSLGIDPQKSVFWLQSDVKEVXELYWILSQFTPXGLLERAHSYKDKV--AKGLSASH 122
Query: 200 ALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVN 241
            L +YPVL A+DILL+ +  VPVG+DQ QH+E+ R++A +VN
Sbjct: 123 GLFSYPVLXAADILLFDTRIVPVGKDQIQHVEIARDIALKVN 164

>pdb|2A4M|A Chain A, Structure Of Trprs Ii Bound To Atp Length = 331

Iteration: 1
 Score =  100 bits (248), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 88/166 (53%), Gaps = 2/166 (1%)
Query: 78  KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYD-TQQLSKATR 136
           + R+++G +PTG++HLG+  G+++N + LQ+  E    + D+ A+T  +D  +Q+ +   
Sbjct: 2   RPRVLTGDRPTGALHLGHLAGSLQNRVRLQDEAELFVLLADVQALTDHFDRPEQVRENVL 61
Query: 137 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFK-EKSHKAGGE 195
             A  YLA G+D  K +  VQS V    EL     +   +  L +    K E + K  GE
Sbjct: 62  AVALDYLAAGLDPQKTTCVVQSAVPELAELTVYFLNLVTVSHLRQNPTVKAEIAQKGYGE 121
Query: 196 NVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVN 241
            V      YPV  A+DI  + +  VPVG+DQ   LE TRE+  R N
Sbjct: 122 RVPAGFFVYPVSQAADIAAFGATLVPVGDDQLPMLEQTREIVRRFN 167

>pdb|1YI8|B Chain B, Crystal Structure Of Tryptophanyl Trrna Synthetase Ii From Deinococcus Radiodurans In Complex With L-Trp Length = 351

Iteration: 1
 Score = 97.1 bits (240), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 86/163 (52%), Gaps = 2/163 (1%)
Query: 81  IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYD-TQQLSKATRETA 139
           +++G +PTG++HLG+  G+++N + LQ+  E    + D+ A+T  +D  +Q+ +     A
Sbjct: 25  VLTGDRPTGALHLGHLAGSLQNRVRLQDEAELFVLLADVQALTDHFDRPEQVRENVLAVA 84
Query: 140 AIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFK-EKSHKAGGENVG 198
             YLA G+D  K +  VQS V    EL     +   +  L +    K E + K  GE V 
Sbjct: 85  LDYLAAGLDPQKTTCVVQSAVPELAELTVYFLNLVTVSHLRQNPTVKAEIAQKGYGERVP 144
Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVN 241
                YPV  A+DI  + +  VPVG+DQ   LE TRE+  R N
Sbjct: 145 AGFFVYPVSQAADIAAFGATLVPVGDDQLPMLEQTREIVRRFN 187

>pdb|2CYB|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed With L-Tyrosine From Archaeoglobus Fulgidus Length = 323

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 78/161 (48%), Gaps = 6/161 (3%)
Query: 78  KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDT-QQLSKAT 135
           K R   G +P+G IHLG+ +  ++  + LQ + +E +  + D+HA      T +++++  
Sbjct: 32  KPRAYVGYEPSGEIHLGHMM-TVQKLMDLQEAGFEIIVLLADIHAYLNEKGTFEEIAEVA 90
Query: 136 RETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQ-FKEKSHKAGG 194
                +++A G+D S+A   + S  +   + +  +     I  LN+  +   E S +   
Sbjct: 91  DYNKKVFIALGLDESRAKFVLGSEYQLSRDYVLDVLKMARITTLNRARRSMDEVSRRK-- 148
Query: 195 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRE 235
           E+  V+ + YP++ A DI     D    G DQ++   L RE
Sbjct: 149 EDPMVSQMIYPLMQALDIAHLGVDLAVGGIDQRKIHMLARE 189

>pdb|1J1U|A Chain A, Crystal Structure Of Archaeal Tyrosyl-Trna Synthetase Complexed With Trna(Tyr) And L-Tyrosine Length = 306

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 74/158 (46%), Gaps = 13/158 (8%)
Query: 84  GVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKATRETAAI 141
           G +P+G IHLG+YL  IK  I LQN+ ++ +  + DLHA +    +  ++ K       +
Sbjct: 34  GFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLHAYLNQKGELDEIRKIGDYNKKV 92
Query: 142 YLACGIDNSKASVFVQSHVRAHVEL---MWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
           + A G+   KA     S  +   +    ++ L+  T +    + ++   +      EN  
Sbjct: 93  FEAMGL---KAKYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMELIARE----DENPK 145
Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 236
           VA + YP++  +DI     D    G +Q++   L REL
Sbjct: 146 VAEVIYPIMQVNDIHYLGVDVAVGGMEQRKIHMLAREL 183

>pdb|3A04|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From Hyperthermophilic Archaeon, Aeropyrum Pernix K1 Length = 372

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 74/185 (40%), Gaps = 32/185 (17%)
Query: 72  ASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ-NSYETLFFIVDLHAITLPY--DT 128
           A +   +  +++G  P+G  H G+ L  +   I LQ N ++    I D  A  +      
Sbjct: 64  AKARGERVAVLTGFMPSGKFHFGHKL-TVDQLIYLQKNGFKVFVAIADAEAFAVRRIGRE 122
Query: 129 QQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEK 188
           + +  A  E  A  +A G+D      + Q+            +  TP     ++IQ    
Sbjct: 123 EAVRIAVEEYIANMIALGLDPKDTEFYFQT------------NRGTP---YFRLIQLFSG 167
Query: 189 SHKAGGENVGVALLTYPVLMAS-----DILLYQSD--------FVPVGEDQKQHLELTRE 235
              A         LT   +MAS     DIL  Q D         VPVG DQ  HL LTR+
Sbjct: 168 KVTAAEMEAIYGELTPAKMMASLTQAADILHVQLDEYGGYRHVVVPVGADQDPHLRLTRD 227
Query: 236 LAERV 240
           LA+R+
Sbjct: 228 LADRM 232

>pdb|3N2Y|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed With P-(2- Tetrazolyl)-Phenylalanine Length = 314

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 73/158 (46%), Gaps = 13/158 (8%)
Query: 84  GVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKATRETAAI 141
           G +P+G IHLG+YL  IK  I LQN+ ++ +  + DLHA +    +  ++ K       +
Sbjct: 34  GFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIIILADLHAYLNQKGELDEIRKIGDYNKKV 92
Query: 142 YLACGIDNSKASVFVQSHV---RAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
           + A G+   KA     S     + +   ++ L+  T +    + ++   +      EN  
Sbjct: 93  FEAMGL---KAKYVYGSEFMLDKDYTLNVYRLALKTTLKRARRSMELIARED----ENPK 145
Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 236
           VA + YP++  + I     D    G +Q++   L REL
Sbjct: 146 VAEVIYPIMQVNGIHYVGGDVAVGGMEQRKIHMLAREL 183

>pdb|2AG6|A Chain A, Crystal Structure Of P-Bromo-L-Phenylalanine-Trna Sythetase In Complex With P-Bromo-L-Phenylalanine Length = 314

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 77/160 (48%), Gaps = 17/160 (10%)
Query: 84  GVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKATRETAAI 141
           G +P+G IHLG+YL  IK  I LQN+ ++ +  + DLHA +    +  ++ K       +
Sbjct: 34  GFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLHAYLNQKGELDEIRKIGDYNKKV 92
Query: 142 YLACGIDNSKASVFVQSHVRAHVEL---MWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
           + A G+   KA     S  +   +    ++ L+  T +    + ++   +      EN  
Sbjct: 93  FEAMGL---KAKYVYGSSFQLDKDYTLNVYRLALKTTLKRARRSMELIARE----DENPK 145
Query: 199 VALLTYPVLMASDILLYQSDFVPVG--EDQKQHLELTREL 236
           VA + YP+ M  + L Y+   V VG  E +K H+ L REL
Sbjct: 146 VAEVIYPI-MQVNPLHYEGVDVAVGGMEQRKIHM-LAREL 183

>pdb|1ZH0|A Chain A, Crystal Structure Of L-3-(2-Napthyl)alanine-Trna Synthetase In Complex With L-3-(2-Napthyl)alanine Length = 314

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 73/158 (46%), Gaps = 13/158 (8%)
Query: 84  GVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKATRETAAI 141
           G +P+G IHLG+YL  IK  I LQN+ ++ +  + DLHA +    +  ++ K       +
Sbjct: 34  GFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLHAYLNQKGELDEIRKIGDYNKKV 92
Query: 142 YLACGIDNSKASVFVQSHVRAHVEL---MWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
           + A G+   KA     S  +   +    ++ L+  T +    + ++   +      EN  
Sbjct: 93  FEAMGL---KAKYVYGSSFQLDKDYTLNVYRLALKTTLKRARRSMELIARE----DENPK 145
Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 236
           VA + YP++  +       D V  G +Q++   L REL
Sbjct: 146 VAEVIYPIMQVNPAHYQGVDVVVGGMEQRKIHMLAREL 183

>pdb|1U7X|A Chain A, Crystal Structure Of A Mutant M. Jannashii Tyrosyl-Trna Synthetase Specific For O-Methyl-Tyrosine Length = 312

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 73/158 (46%), Gaps = 13/158 (8%)
Query: 84  GVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKATRETAAI 141
           G +P+G IHLG+YL  IK  I LQN+ ++ +  + DLHA +    +  ++ K       +
Sbjct: 34  GFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLHAYLNQKGELDEIRKIGDYNKKV 92
Query: 142 YLACGIDNSKASVFVQSHVRAHVEL---MWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
           + A G+   KA     S  +   +    ++ L+  T +    + ++   +      EN  
Sbjct: 93  FEAMGL---KAKYVYGSTFQLDKDYTLNVYRLALKTTLKRARRSMELIARE----DENPK 145
Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 236
           VA + YP++  + I     D    G +Q++   L REL
Sbjct: 146 VAEVIYPIMQVNAIHYPGVDVAVGGMEQRKIHMLAREL 183

>pdb|1ZH6|A Chain A, Crystal Structure Of P-Acetylphenylalanine-Trna Synthetase In Complex With P-Acetylphenylalanine Length = 314

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 72/158 (45%), Gaps = 13/158 (8%)
Query: 84  GVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKATRETAAI 141
           G +P+G IHLG+YL  IK  I LQN+ ++ +  + DLHA +    +  ++ K       +
Sbjct: 34  GFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLHAYLNQKGELDEIRKIGDYNKKV 92
Query: 142 YLACGIDNSKASVFVQSHVRAHVEL---MWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
           + A G+   KA     S  +   +    ++ L+  T +    + ++   +      EN  
Sbjct: 93  FEAMGL---KAKYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMELIARED----ENPK 145
Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 236
           VA + YP++  +       D    G +Q++   L REL
Sbjct: 146 VAEVIYPIMQVNGCHYRGVDVAVGGMEQRKIHMLAREL 183

>pdb|2HGZ|A Chain A, Crystal Structure Of A P-Benzoyl-L-Phenylalanyl-Trna Synthetase Length = 306

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Query: 84  GVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA 121
           G +P+G IHLG+YL  IK  I LQN+ ++ +  + DLHA
Sbjct: 33  GFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLHA 70

>pdb|3QE4|A Chain A, An Evolved Aminoacyl-Trna Synthetase With Atypical Polysubstrate Specificity Length = 312

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 68/162 (41%), Gaps = 21/162 (12%)
Query: 84  GVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKATRETAAI 141
           G +P+G IHLG+YL  IK  I LQN+ ++ +  + DLHA +    +  ++ K       +
Sbjct: 34  GFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIIVLADLHAYLNQKGELDEIRKIGDYNKKV 92
Query: 142 YLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-------G 194
           + A G+   KA     S         W+L     +      ++   K  +          
Sbjct: 93  FEAMGL---KAKYVYGSE--------WMLDKDYTLNVYRLALKTTLKRARRSMELIARED 141
Query: 195 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 236
           EN  VA + YP++  +       D    G +Q++   L REL
Sbjct: 142 ENPKVAEVIYPIMQVNGAHYLGVDVAVGGMEQRKIHMLAREL 183

>pdb|3D6U|A Chain A, Crystal Structure Of 4-(Trifluoromethyldiazirinyl) Phenylalanyl-Trna Synthetase Length = 314

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 15/165 (9%)
Query: 78  KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKAT 135
           +K  + G +P+G IHLG+YL  IK  I LQN+ ++ +  + DL A +    +  ++ K  
Sbjct: 28  EKSAIIGFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLFAYLNQKGELDEIRKIG 86
Query: 136 RETAAIYLACGIDNSKASVFVQSHV--RAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG 193
                ++ A G+      V+  S +  + +   ++ L+  T +    + ++   +     
Sbjct: 87  DYNKKVFEAMGL--KAKYVYGSSFMLDKDYTLNVYRLALKTTLKRARRSMELIARED--- 141
Query: 194 GENVGVALLTYPVLMASDILLYQSDFVPVG--EDQKQHLELTREL 236
            EN  VA + YP+ M  + L Y+   V VG  E +K H+ L REL
Sbjct: 142 -ENPKVAEVIYPI-MQVNPLHYEGVDVAVGGMEQRKIHM-LAREL 183

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	266
3n9i_A	346	Tryptophanyl-tRNA synthetase; tryptophan-tRNA liga	1e-118
3sz3_A	341	Tryptophanyl-tRNA synthetase; structural genomics,	1e-116
3prh_A	388	Tryptophanyl-tRNA synthetase; TRPRS, protein biosy	1e-114
3tzl_A	322	Tryptophanyl-tRNA synthetase; structural genomics,	1e-114
1i6k_A	328	TRPRS, tryptophanyl-tRNA synthetase; class I tRNA	1e-114
2yy5_A	348	Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synt	1e-113
2el7_A	337	Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth	1e-108
1yi8_B	351	Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.	1e-105
2g36_A	340	Tryptophanyl-tRNA synthetase; TM0492, structural g	1e-100
3p0j_A	690	Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase	3e-68
3p0j_A	690	Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase	4e-43
2cyc_A	375	Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacy	2e-66
3vgj_A	373	Tyrosyl-tRNA synthetase, putative; tyrrs, ligase;	3e-61
2j5b_A	348	Tyrosyl-tRNA synthetase; ligase, protein biosynthe	3e-61
3jxe_A	392	Tryptophanyl-tRNA synthetase; adenosine triphospha	2e-56
1r6u_A	437	Tryptophanyl-tRNA synthetase; class IC tRNA synthe	1e-35
1r6t_A	477	Tryptophanyl-tRNA synthetase; class IC tRNA synthe	2e-35
3i05_A	395	Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP	6e-35
2ip1_A	432	Tryptophanyl-tRNA synthetase; rossmann fold, struc	5e-34
3hv0_A	393	Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-bin	7e-33
3hzr_A	386	Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str	1e-31
3tze_A	406	Tryptophanyl-tRNA synthetase; structural genomics,	6e-31
3foc_A	451	Tryptophanyl-tRNA synthetase; structural genomics,	3e-19
2dlc_X	394	Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligas	1e-12
2cya_A	364	Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, st	8e-09
2cyb_A	323	Tyrosyl-tRNA synthetase; rossmann-fold, structural	1e-08
2zp1_A	314	Tyrosyl-tRNA synthetase; tRNA synthetases class I,	6e-08
1n3l_A	372	Tyrosyl-tRNA synthetase; rossmann fold AS catalyti	7e-08

>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} Length = 346

 Score =  340 bits (874), Expect = e-118
 Identities = 94/182 (51%), Positives = 127/182 (69%), Gaps = 1/182 (0%)

Query: 64  LSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAIT 123
           +SEP      + S K  + SG QP+G + +GNY+GA++ W+ +Q+ Y+ ++ IVDLHAIT
Sbjct: 1   MSEPMVLSKPTVSSKPIVFSGAQPSGELTIGNYMGALRQWVQMQDDYDCIYCIVDLHAIT 60

Query: 124 LPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMI 183
              D   L K T +T A+YLACGID  K+++FVQSHV  H +L W L+  T  G L++M 
Sbjct: 61  ARQDPALLRKRTLDTLALYLACGIDPKKSTIFVQSHVPEHSQLSWALNCYTYFGELSRMT 120

Query: 184 QFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYL 243
           QFK+KS +   EN+   L  YPVLMA+DILLYQ++ VPVGEDQKQHLEL+R++A R N L
Sbjct: 121 QFKDKSAR-YAENINAGLFDYPVLMAADILLYQTNQVPVGEDQKQHLELSRDIASRFNNL 179

Query: 244 YG 245
           YG
Sbjct: 180 YG 181

>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor} Length = 341

 Score =  335 bits (861), Expect = e-116
 Identities = 85/176 (48%), Positives = 121/176 (68%), Gaps = 1/176 (0%)

Query: 73  SSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLS 132
           S++  K  ++SGVQP+G + +GNYLGA++ W  +Q+ Y+  + +VDLHAIT+  D Q L 
Sbjct: 1   SNAMSKPIVLSGVQPSGELSIGNYLGALRQWQQMQDDYDCQYCVVDLHAITVRQDPQALH 60

Query: 133 KATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA 192
           +AT +  AI LA G+D  K+++FVQSHV  H +L W+L+  T +G L++M QFK+KS + 
Sbjct: 61  EATLDALAICLAVGVDPKKSTLFVQSHVPEHAQLGWVLNCYTQMGELSRMTQFKDKSAR- 119

Query: 193 GGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRK 248
              +V   L  YPVLMA+DILLY +  VPVG DQKQHLEL R++A R N +Y   +
Sbjct: 120 YANDVNAGLFGYPVLMAADILLYGAHQVPVGSDQKQHLELARDIATRFNNIYSPEQ 175

>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis} Length = 388

 Score =  332 bits (854), Expect = e-114
 Identities = 93/174 (53%), Positives = 119/174 (68%), Gaps = 2/174 (1%)

Query: 72  ASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQL 131
               ++K+ I SG+QP+GS+ LGNY+GA+K ++ LQ+ Y + F IVD HAIT+P D  +L
Sbjct: 29  IDPFTMKQTIFSGIQPSGSVTLGNYIGAMKQFVELQHDYNSYFCIVDQHAITVPQDRLEL 88

Query: 132 SKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHK 191
            K  R  AA+YLA G+D  KA++F+QS V AH +  W++     IG L +M QFK+KS  
Sbjct: 89  RKNIRNLAALYLAVGLDPEKATLFIQSEVPAHAQAGWMMQCVAYIGELERMTQFKDKS-- 146

Query: 192 AGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYG 245
            G E V   LLTYP LMA+DILLY +D VP GEDQKQHLELTR LAER N  Y 
Sbjct: 147 KGNEAVVSGLLTYPPLMAADILLYGTDLVPPGEDQKQHLELTRNLAERFNKKYN 200

>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} PDB: 3m5w_A* Length = 322

 Score =  329 bits (846), Expect = e-114
 Identities = 70/170 (41%), Positives = 110/170 (64%), Gaps = 2/170 (1%)

Query: 76  SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKAT 135
           S   R+++G+QP+G +H+GNY GAIK  +  Q   +   FI + HA+T   D ++L + +
Sbjct: 1   SNAMRVLTGLQPSGDLHIGNYFGAIKQMVDAQEKSQMFMFIANYHAMTSSQDGEKLKQNS 60

Query: 136 RETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGE 195
            + AA +L+ GID  K+  ++QS V+  +EL W+LS  TP+G L +   +K+K  K  G 
Sbjct: 61  LKAAAAFLSLGIDPQKSVFWLQSDVKEVMELYWILSQFTPMGLLERAHSYKDKVAK--GL 118

Query: 196 NVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYG 245
           +    L +YPVLMA+DILL+ +  VPVG+DQ QH+E+ R++A +VN  +G
Sbjct: 119 SASHGLFSYPVLMAADILLFDTRIVPVGKDQIQHVEIARDIALKVNNEWG 168

>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A Length = 328

 Score =  329 bits (845), Expect = e-114
 Identities = 93/167 (55%), Positives = 118/167 (70%), Gaps = 2/167 (1%)

Query: 79  KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
           K I SG+QP+G I +GNY+GA++ ++ LQ+ Y   F IVD HAIT+  D  +L +  R  
Sbjct: 2   KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 61

Query: 139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
           AA+YLA GID ++A++F+QS V AH +  W+L     IG L +M QFKEKS  AG E V 
Sbjct: 62  AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKS--AGKEAVS 119

Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYG 245
             LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N  YG
Sbjct: 120 AGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYG 166

>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae} Length = 348

 Score =  329 bits (845), Expect = e-113
 Identities = 75/174 (43%), Positives = 106/174 (60%), Gaps = 5/174 (2%)

Query: 77  VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATR 136
           + KR ++G+Q +G  HLGNYLG +++ I LQ   +   F+ DLH+IT+ +  Q L +   
Sbjct: 3   MMKRALTGIQASGKQHLGNYLGVMQSLIELQEQCQLFVFVADLHSITVDFQPQALKQNNF 62

Query: 137 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHK----- 191
           +     LA G+D  KA +F+QS +  H  + +L+   + +G L +M QFK K  +     
Sbjct: 63  DLVRTLLAVGLDPQKACLFLQSDLLEHSMMGYLMMVQSNLGELQRMTQFKAKKAEQTRNP 122

Query: 192 AGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYG 245
            G  N+   LLTYP LMA DILLYQ D VPVG DQKQHLELTR+LA+R+   + 
Sbjct: 123 NGTLNIPTGLLTYPALMAGDILLYQPDIVPVGNDQKQHLELTRDLAQRIQKKFK 176

>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus} Length = 337

 Score =  316 bits (812), Expect = e-108
 Identities = 89/171 (52%), Positives = 120/171 (70%), Gaps = 6/171 (3%)

Query: 79  KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSY--ETLFFIVDLHAITLPY--DTQQLSKA 134
           KR++SG+QP+G IH+GNYLGAIK W+A+      +  F IVD HA+T P   D   L++ 
Sbjct: 2   KRVLSGIQPSGEIHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDPSTLAQR 61

Query: 135 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 194
           T E A + +A G+D  K ++FVQSHV  H EL W+ ++ TP+G L +M QFK+K+ K   
Sbjct: 62  TFEAALVNIAAGLDPEKVTLFVQSHVPEHTELSWVFTTLTPLGDLTRMTQFKDKASK--Q 119

Query: 195 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYG 245
           E V   LL YPVL A+DIL+Y++D VPVGEDQ QH+ELTRE+A R N+L+G
Sbjct: 120 ETVWSGLLMYPVLQAADILIYKADTVPVGEDQVQHIELTREIARRFNHLFG 170

>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A* Length = 351

 Score =  307 bits (790), Expect = e-105
 Identities = 60/189 (31%), Positives = 99/189 (52%), Gaps = 2/189 (1%)

Query: 59  YCNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVD 118
           + ++ +   T P  +++  + R+++G +PTG++HLG+  G+++N + LQ+  E    + D
Sbjct: 3   FVDLEVPTMTTPTPAATPARPRVLTGDRPTGALHLGHLAGSLQNRVRLQDEAELFVLLAD 62

Query: 119 LHAITLPYD-TQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIG 177
           + A+T  +D  +Q+ +     A  YLA G+D  K +  VQS V    EL     +   + 
Sbjct: 63  VQALTDHFDRPEQVRENVLAVALDYLAAGLDPQKTTCVVQSAVPELAELTVYFLNLVTVS 122

Query: 178 WLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 236
            L +    K +  + G GE V      YPV  A+DI  + +  VPVG+DQ   LE TRE+
Sbjct: 123 HLRQNPTVKAEIAQKGYGERVPAGFFVYPVSQAADIAAFGATLVPVGDDQLPMLEQTREI 182

Query: 237 AERVNYLYG 245
             R N LY 
Sbjct: 183 VRRFNALYA 191

>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima} Length = 340

 Score =  295 bits (759), Expect = e-100
 Identities = 75/171 (43%), Positives = 108/171 (63%), Gaps = 3/171 (1%)

Query: 78  KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPY-DTQQLSKAT 135
             RI+SG++PTG +H+G+ +GA++NW+ LQ    E  +F+ D HA+T  Y D  +L + T
Sbjct: 12  HMRILSGMRPTGKLHIGHLVGALENWVKLQEEGNECFYFVADWHALTTHYDDVSKLKEYT 71

Query: 136 RETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-G 194
           R+    +LACGID  K+ +FVQS V+ H EL  L S    +  L ++  +KE   +    
Sbjct: 72  RDLVRGFLACGIDPEKSVIFVQSGVKEHAELALLFSMIVSVSRLERVPTYKEIKSELNYK 131

Query: 195 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYG 245
           +      L YPVL A+DIL+Y+++ VPVGEDQ  H+ELTRE+A R NYLY 
Sbjct: 132 DLSTAGFLIYPVLQAADILIYKAEGVPVGEDQVYHIELTREIARRFNYLYD 182

>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* Length = 690

 Score =  222 bits (567), Expect = 3e-68
 Identities = 30/174 (17%), Positives = 69/174 (39%), Gaps = 7/174 (4%)

Query: 78  KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAIT---LPYDTQQLSK 133
             R   G +P+G +H+   +    N      +  E +F++ D  A+    +  + +++  
Sbjct: 40  LIRCYDGFEPSGRMHIAQGIFKAVNVNKCTAAGCEFVFWVADWFALMNDKVGGELEKIRI 99

Query: 134 ATRETAAIYLACGIDNSKAS-VFVQSHVRAHVELMWLLS-SATPIGWLNKMIQFKEKSHK 191
             R    ++ A G+D  K   ++    + +H +  W +         + ++ +      K
Sbjct: 100 VGRYLIEVWKAAGMDMDKVLFLWSSEEITSHADTYWRMVLDIGRQNTIARIKKCCTIMGK 159

Query: 192 AGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYG 245
                +  A + YP++   DI   ++D   +G DQ++   L RE  + +     
Sbjct: 160 -TEGTLTAAQVLYPLMQCCDIFFLKADICQLGLDQRKVNMLAREYCDLIGRKLK 212

>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* Length = 690

 Score =  154 bits (391), Expect = 4e-43
 Identities = 25/197 (12%), Positives = 56/197 (28%), Gaps = 11/197 (5%)

Query: 51  HNGCGFRCYCNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGN-YLGAIKNWIALQNS 109
                +R          TA  A+ +     +         + +    +   K++IA    
Sbjct: 356 EAVKSYRKDGATLPLAETALPAAPAKPHACMWMPALLKVPLDVAEGMIKVTKDFIAAHPE 415

Query: 110 YETLFFIVDLHAIT---LPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVEL 166
                 + D  A+    +    + +S A +   A+  A G+ +S   V     +  + + 
Sbjct: 416 GTVTLVLPDWSAVASDEITGVEKDISAALQVNCALLKAYGLPSSVKIVTENEVILGNCDD 475

Query: 167 MWLLS-SATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGED 225
            W+          L+ + +        GGE      +   ++  +  L+     V     
Sbjct: 476 FWVSVIGIARKNLLSHVEELY------GGEVRNAGQVIAALMRVATALMLSVSHVISTSL 529

Query: 226 QKQHLELTRELAERVNY 242
                   RE  +    
Sbjct: 530 DGHINAFAREYTKERID 546

>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii} Length = 375

 Score =  209 bits (534), Expect = 2e-66
 Identities = 36/184 (19%), Positives = 71/184 (38%), Gaps = 9/184 (4%)

Query: 78  KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAIT---LPYDTQQLSK 133
             +   G + +G IHLG  L A       Q +  +T  F+ D H+     L  D + + +
Sbjct: 33  PLQHYIGFEISGYIHLGTGLMAGAKIADFQKAGIKTRVFLADWHSWINDKLGGDLEVIQE 92

Query: 134 ATRET-----AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEK 188
              +             G D  K    + S +    +    +   +    L+++++    
Sbjct: 93  VALKYFKVGMEKSIEVMGGDPKKVEFVLASEILEKGDYWQTVIDISKNVTLSRVMRSITI 152

Query: 189 SHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRK 248
             +  GE +  A L YP++  +DI          G DQ++   +  E+A+++ Y     +
Sbjct: 153 MGRQMGEAIDFAKLIYPMMQVADIFYQGVTIAHAGMDQRKAHVIAIEVAQKLRYHPIVHE 212

Query: 249 WKKL 252
            +KL
Sbjct: 213 GEKL 216

>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum} Length = 373

 Score =  196 bits (500), Expect = 3e-61
 Identities = 33/174 (18%), Positives = 66/174 (37%), Gaps = 6/174 (3%)

Query: 78  KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSY-ETLFFIVDLHAIT---LPYDTQQLSK 133
           K     G +P+G +H+   L        L ++    +F+I D  A     +  D +++ K
Sbjct: 56  KLICYDGFEPSGRMHIAQGLLKSIIVNKLTSNGCTFIFWIADWFAHLNNKMSGDLKKIKK 115

Query: 134 ATRETAAIYLACGIDNSKASVFVQS-HVRAHVELMWLLS-SATPIGWLNKMIQFKEKSHK 191
                  ++ +CG++         S  +       W L    +    +N+M +  +   +
Sbjct: 116 VGSYFIEVWKSCGMNMENVQFLWASEEINKKPNEYWSLVLDISRSFNINRMKRCLKIMGR 175

Query: 192 AGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYG 245
           + GE    + + YP +  +DI     D   +G DQ++   L RE  +       
Sbjct: 176 SEGEENYCSQILYPCMQCADIFFLNVDICQLGIDQRKVNMLAREYCDIKKIKKK 229

>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus} Length = 348

 Score =  195 bits (498), Expect = 3e-61
 Identities = 32/176 (18%), Positives = 69/176 (39%), Gaps = 14/176 (7%)

Query: 78  KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA---ITLPYDTQQLSK 133
                +G +P+G IH+   L  + N   +     + + +I D  A   + +  D  ++ +
Sbjct: 40  IFTAYNGFEPSGRIHIAQALITVMNTNNMIECGGQMIIYIADWFAKMNLKMNGDINKIRE 99

Query: 134 ATRETAAIYLACGIDNSKASVFVQSHVR----AHVELMWLLSSATPIGWLNKMIQFKEKS 189
             R    ++ ACGI+         S       +++E M  ++  + I  + +  Q   ++
Sbjct: 100 LGRYFIEVFKACGINLDGTRFIWASEFIASNPSYIERMLDIAEFSTISRVKRCCQIMGRN 159

Query: 190 HKAGGENVGVALLTYPVLMASDILLYQS---DFVPVGEDQKQHLELTRELAERVNY 242
                + +  + + YP + A+D+        D   +G DQ++   L  E A     
Sbjct: 160 ---ESDCLKASQIFYPCMQAADVFELVPEGIDICQLGIDQRKVNMLAIEYANDRGL 212

>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii} Length = 392

 Score =  184 bits (470), Expect = 2e-56
 Identities = 27/172 (15%), Positives = 57/172 (33%), Gaps = 12/172 (6%)

Query: 78  KKRIVSGVQPTGSIHLGNYLGAIKN-WIALQNSYETLFFIVDLHAITLPYDT--QQLSKA 134
              + +G  P+G +H+G+ +      W+  +        I D        +       + 
Sbjct: 73  GFFLYTGRGPSGPMHIGHIIPFFATKWLQEKFGVNLYIQITDDEKFLFKENLTFDDTKRW 132

Query: 135 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 194
             +     +A G D  K  +F  S      E+   ++          +  F E+S     
Sbjct: 133 AYDNILDIIAVGFDPDKTFIFQNSEFTKIYEMAIPIAKKINFSMAKAVFGFTEQSK---- 188

Query: 195 ENVGVALLTYPVLMASDILLYQ-SDFVPVGEDQKQHLELTRELAERVNYLYG 245
               + ++ +P +  +     +    +P   DQ  +  L R+ AE + Y   
Sbjct: 189 ----IGMIFFPAIQIAPTFFERKRCLIPAAIDQDPYWRLQRDFAESLGYYKT 236

>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A Length = 437

 Score =  130 bits (329), Expect = 1e-35
 Identities = 30/179 (16%), Positives = 62/179 (34%), Gaps = 18/179 (10%)

Query: 78  KKRIVSGVQPTG-SIHLGNYLGAIKN-WIALQNSYETLFFIVDLHA-ITLPYDTQQLSKA 134
              + +G  P+  ++H+G+ +  I   W+    +   +  + D    +       Q    
Sbjct: 108 PFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGD 167

Query: 135 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 194
             E A   +ACG D +K   F+ S +           +   I       Q K        
Sbjct: 168 AVENAKDIIACGFDINK--TFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGI--FGFT 223

Query: 195 ENVGVALLTYPVLMASDILLYQSDF-----------VPVGEDQKQHLELTRELAERVNY 242
           ++  +  +++P + A+                    +P   DQ  +  +TR++A R+ Y
Sbjct: 224 DSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGY 282

>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A Length = 477

 Score =  130 bits (329), Expect = 2e-35
 Identities = 29/180 (16%), Positives = 64/180 (35%), Gaps = 20/180 (11%)

Query: 78  KKRIVSGVQPTG-SIHLGNYLGAIKN-WIALQNSYETLFFIVDLHA-ITLPYDTQQLSKA 134
              + +G  P+  ++H+G+ +  I   W+    +   +  + D    +       Q    
Sbjct: 155 PFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGD 214

Query: 135 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG- 193
             E A   +ACG D +K  +F            +       +  + K + F +     G 
Sbjct: 215 AVENAKDIIACGFDINKTFIFSDLDYMGMSSGFY-----KNVVKIQKHVTFNQVKGIFGF 269

Query: 194 GENVGVALLTYPVLMASDILLYQSDF-----------VPVGEDQKQHLELTRELAERVNY 242
            ++  +  +++P + A+                    +P   DQ  +  +TR++A R+ Y
Sbjct: 270 TDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGY 329

>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} Length = 395

 Score =  128 bits (323), Expect = 6e-35
 Identities = 34/215 (15%), Positives = 66/215 (30%), Gaps = 36/215 (16%)

Query: 78  KKRIVSGVQPTG-SIHLGNYLGAIKN-WIALQNSYETLFFIVDLHAITL-PYDTQQLSKA 134
              + +G  P+  S+H+G+ +  +   W+        +  + D           +Q+   
Sbjct: 78  PFYLYTGRGPSSESMHMGHLIPFMFTKWLQDSFRVPLVIQMTDDEKFYFRNIPMEQVEAM 137

Query: 135 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG- 193
           T E     +A G D     +F       ++  M+       +  + +     +     G 
Sbjct: 138 TTENIKDIIAMGFDPELTFIFRDFD---YMGCMY-----RTVAKIERAFTASQVRGCFGF 189

Query: 194 GENVGVALLTYPVLMASDILLYQSD------------FVPVGEDQKQHLELTRELAERVN 241
                     +P + A+                     +P   DQ  +  LTR++A R+ 
Sbjct: 190 AMEDNCGRWMFPAIQAAPSFSAAFPHIFPPSMGNVFCLIPQAIDQDPYFRLTRDIAPRLG 249

Query: 242 YLY------------GGRKWKKLGGRGGAIFKVDS 264
           YL              G K K     G A+   D+
Sbjct: 250 YLKPAVIHSKFFPGLSGPKGKMSSSSGTAVLLTDT 284

>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A* Length = 432

 Score =  126 bits (318), Expect = 5e-34
 Identities = 24/182 (13%), Positives = 54/182 (29%), Gaps = 25/182 (13%)

Query: 78  KKRIVSGVQPTG-SIHLGNYLGAIKN-WIALQNSYETLFFIVDLHAITLPYD--TQQLSK 133
              + +G  P+  S+HLG+ +  +   W+        +  + D       +      +  
Sbjct: 102 PFFLYTGRGPSSDSMHLGHMIPFVFTKWLQEVFDVPLVIELTDDEKFLFKHKLTINDVKN 161

Query: 134 ATRETAAIYLACGIDNSKASVFVQSHVRAHV--ELMWLLSSATPIGWLNKMIQFKEKSHK 191
             RE A   +A G D     +F           E +  +S          +  F +    
Sbjct: 162 FARENAKDIIAVGFDPKNTFIFSDLQYMGGAFYETVVRVSRQITGSTAKAVFGFNDSDC- 220

Query: 192 AGGENVGVALLTYPVLMASDILLYQSDF-----------VPVGEDQKQHLELTRELAERV 240
                  +    +  +  +                    +P   DQ  +  + R++A+++
Sbjct: 221 -------IGKFHFASIQIATAFPSSFPNVLGLPDKTPCLIPCAIDQDPYFRVCRDVADKL 273

Query: 241 NY 242
            Y
Sbjct: 274 KY 275

>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} Length = 393

 Score =  122 bits (308), Expect = 7e-33
 Identities = 28/184 (15%), Positives = 60/184 (32%), Gaps = 26/184 (14%)

Query: 78  KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQNS--YETLFFIVDLHAITLPYDT--QQLS 132
              + +G  P+  S+H+G+ +  +     LQ++     +  + D        +   ++  
Sbjct: 74  LFYLYTGRGPSSESLHVGHLVPFLFTKY-LQDTFKVPLVIQLTDDEKFIFKSNLTLEETH 132

Query: 133 KATRETAAIYLACGIDNSKASVFVQSH-VRAHVELMWLLSSATPIGWLNKMIQFKEKSHK 191
               E     +ACG D     +F     +      +  +        +  +  FK+  + 
Sbjct: 133 NYAYENMKDIIACGFDPELTFIFTNLEYIAELYPDILRIEKKISCSQIKSIFGFKDSCN- 191

Query: 192 AGGENVGVALLTYPVLMASDILLYQSDF-----------VPVGEDQKQHLELTRELAERV 240
                  V    +P + A+                    VP   DQ  +  + R++A R+
Sbjct: 192 -------VGKFAFPAVQAAPAFSSSFPHIFGGRTDIHCLVPHAIDQDPYFRMVRDVAPRL 244

Query: 241 NYLY 244
            YL 
Sbjct: 245 GYLK 248

>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica} Length = 386

 Score =  119 bits (299), Expect = 1e-31
 Identities = 26/178 (14%), Positives = 53/178 (29%), Gaps = 22/178 (12%)

Query: 78  KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPY---DTQQLSKA 134
              I     P   + L  Y+        LQ+++     I  L  I +        + SK 
Sbjct: 82  PTFIFIQKYPQKEVALEEYITLEFAR-YLQDAFNIQVIIQILDDIKVLNREATINEASKM 140

Query: 135 TRETAAIYLACGIDNSKASVFVQS-HVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG 193
           + +     LA G +  K  ++    +       + L+  AT    +     F+   +   
Sbjct: 141 SNDLMKYILAFGFNEDKTFIYTDYQYFGKMYRTISLVEKATAYNVVQPFFNFEYSDN--- 197

Query: 194 GENVGVALLTYPVLMASDILLYQSDF---------VPVGEDQKQHLELTRELAERVNY 242
                +  L  P +M + +                V       Q   +  ++A  +N+
Sbjct: 198 -----IGKLASPSIMTASMFSQSYSHFFSSPARCLVLDSIKNVQFHSIIDQIATTLNF 250

>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi} Length = 406

 Score =  117 bits (295), Expect = 6e-31
 Identities = 27/179 (15%), Positives = 53/179 (29%), Gaps = 20/179 (11%)

Query: 78  KKRIVSGVQPTG-SIHLGNYLGAIKN-WIALQNSYETLFFIVDLHA-ITLPYDTQQLSKA 134
              + +G  P+  ++H+G+ +  +   ++        +  I D    +      +     
Sbjct: 101 PFYLYTGRGPSSKTMHIGHTIPFLLCKYMQDAFKIRLVIQITDDEKFLWKSMRLEDAMAY 160

Query: 135 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG- 193
            RE     +  G D     +F       H E   L         ++K I   E     G 
Sbjct: 161 GRENIKDIVTLGFDPKLTYIFSNVEASHHFEENIL--------KISKTINLNEAIKVFGF 212

Query: 194 GENVGVALLTYPVLMASDILLYQSDF--------VPVGEDQKQHLELTRELAERVNYLY 244
             +  +  + +P    +        F        VP   DQ     L R+ A+ +    
Sbjct: 213 DMSSNIGQVGFPAKEIAPCFSSSFRFIGKGAMCLVPAAVDQDPFFRLARDKAKALGEKK 271

>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803} Length = 451

 Score = 85.6 bits (211), Expect = 3e-19
 Identities = 36/195 (18%), Positives = 63/195 (32%), Gaps = 15/195 (7%)

Query: 78  KKRIVSGVQPT-GSIHLGNYLGAIKNWIALQNS--YETLFFIVDLHAITLPYDT-QQLSK 133
              I +G  P+ G++HLG+ L  I           Y  +    D   +     +  ++  
Sbjct: 91  PIYIYTGRGPSSGALHLGHLLPFIFTKYLQDAFKCYVVIQITDDEKFLRNRSLSYAEVDS 150

Query: 134 ATRETAAIYLACGIDNSKASVFVQSH---VRAHVELMWLLSSATPIGWLNKMIQFKEKSH 190
            TRE     +ACG D  K  +F+ S    ++       L+    PI  L     F   ++
Sbjct: 151 YTRENIKDIIACGFDPDKTFIFINSQYLSLKNRYRFSCLVDRMLPISQLRASFGFSNDAN 210

Query: 191 KAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWK 250
                   V    +P      +     D +P             + A+ V+     +K  
Sbjct: 211 --------VGYAAFPPKQMLPVYSTYFDGLPFTRVPLPVGTGNEDAADAVSTKKASKKTP 262

Query: 251 KLGGRGGAIFKVDSL 265
           K       +  V+ L
Sbjct: 263 KKDAVLSPVHVVEEL 277

>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae} Length = 394

 Score = 66.0 bits (161), Expect = 1e-12
 Identities = 33/174 (18%), Positives = 56/174 (32%), Gaps = 17/174 (9%)

Query: 80  RIVSGVQPTGSIHLGNYLGAIK-NWIALQNS-YETLFFIVDLHA----ITLPYDTQQLSK 133
           ++  G  PTG  H G ++   K        +  E    + DLHA    +  P +      
Sbjct: 41  KLYWGTAPTGRPHCGYFVPMTKLAD--FLKAGCEVTVLLADLHAFLDNMKAPLEVVNYRA 98

Query: 134 ATRETAAIYL--ACGIDNSKASVFVQSHV---RAHVELMWLLSSATPIGWLNKMIQFKEK 188
              E     +  +  +   K    V S       +   ++ LS+        +      K
Sbjct: 99  KYYELTIKAILRSINVPIEKLKFVVGSSYQLTPDYTMDIFRLSNIVSQNDAKRAGADVVK 158

Query: 189 SHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNY 242
                  N  ++ L YP++ A D      D    G DQ++   L  E    + Y
Sbjct: 159 Q----VANPLLSGLIYPLMQALDEQFLDVDCQFGGVDQRKIFVLAEENLPSLGY 208

>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix} Length = 364

 Score = 54.4 bits (131), Expect = 8e-09
 Identities = 32/167 (19%), Positives = 63/167 (37%), Gaps = 12/167 (7%)

Query: 84  GVQPTGSIHLGNYLGAIKNWIA-LQNS-YETLFFIVDLHA-ITLPY--DTQQLSKATRET 138
           G +P+G  H+G  +   K  +  L  +  +        HA I      D   +  A R  
Sbjct: 41  GYEPSGVAHIGWLVWMYK--VKDLVEAGVDFSVLEATWHAYINDKLGGDMDLIRAAARIV 98

Query: 139 AAIYLACGIDNSKASVFVQSHVRAH---VELMWLLSSATPIGWLNKMIQFKEKSHKAGGE 195
             +  A G+   +        + +      L+  ++    +  + + +    +  +A   
Sbjct: 99  RRVMEAAGVPVERVRFVDAEELASDKDYWGLVIRVAKRASLARVRRALTIMGR--RAEEA 156

Query: 196 NVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNY 242
            V  + L YP++  SDI     D    G DQ++   L R++AE++  
Sbjct: 157 EVDASKLIYPLMQVSDIFYMDLDIALGGMDQRKAHMLARDVAEKLGR 203

>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus} Length = 323

 Score = 53.8 bits (130), Expect = 1e-08
 Identities = 40/168 (23%), Positives = 78/168 (46%), Gaps = 10/168 (5%)

Query: 80  RIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKATRE 137
           R   G +P+G IHLG+ +   K  + LQ + +E +  + D+HA +      +++++    
Sbjct: 34  RAYVGYEPSGEIHLGHMMTVQK-LMDLQEAGFEIIVLLADIHAYLNEKGTFEEIAEVADY 92

Query: 138 TAAIYLACGIDNSKASVFVQSHV---RAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 194
              +++A G+D S+A   + S     R +V  +  ++  T +    + +    +      
Sbjct: 93  NKKVFIALGLDESRAKFVLGSEYQLSRDYVLDVLKMARITTLNRARRSMDEVSRR----K 148

Query: 195 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNY 242
           E+  V+ + YP++ A DI     D    G DQ++   L RE   R+ Y
Sbjct: 149 EDPMVSQMIYPLMQALDIAHLGVDLAVGGIDQRKIHMLARENLPRLGY 196

>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A* Length = 314

 Score = 51.5 bits (124), Expect = 6e-08
 Identities = 39/169 (23%), Positives = 67/169 (39%), Gaps = 17/169 (10%)

Query: 78  KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKAT 135
           +K    G +P+G IHLG+YL   K  I LQN+ ++ +  + DL A +    +  ++ K  
Sbjct: 28  EKSAYIGFEPSGKIHLGHYLQIKK-MIDLQNAGFDIIILLADLAAYLNQKGELDEIRKIG 86

Query: 136 RETAAIYLACGIDNSK--ASVFVQSHVRAHVELMWLLSSATPIGWLNKMI---QFKEKSH 190
                ++ A G+       S F          +  L    T    L +     +   +  
Sbjct: 87  DYNKKVFEAMGLKAKYVYGSEFQLDKDYTL-NVYRLALKTT----LKRARRSMELIARE- 140

Query: 191 KAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAER 239
               EN  VA + YP++  +       D    G +Q++   L REL  +
Sbjct: 141 ---DENPKVAEVIYPIMQVNTSHYLGVDVAVGGMEQRKIHMLARELLPK 186

>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A* Length = 372

 Score = 51.7 bits (124), Expect = 7e-08
 Identities = 36/174 (20%), Positives = 61/174 (35%), Gaps = 17/174 (9%)

Query: 80  RIVSGVQPTGSIHLGNYLGAIKNWIA-LQNS-YETLFFIVDLHAI----TLPYDTQQLSK 133
           +I  G   TG  H+  ++   K  IA    +  E      DLHA       P++  +L  
Sbjct: 37  KIYWGTATTGKPHVAYFVPMSK--IADFLKAGCEVTILFADLHAYLDNMKAPWELLELRV 94

Query: 134 ATRETA--AIYLACGIDNSKASVFVQSHV---RAHVELMWLLSSATPIGWLNKMIQFKEK 188
           +  E    A+  + G+   K      +     + +   ++ LSS        K      K
Sbjct: 95  SYYENVIKAMLESIGVPLEKLKFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAGAEVVK 154

Query: 189 SHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNY 242
                 E+  ++ L YP L A D    + D    G DQ++      +    + Y
Sbjct: 155 Q----VEHPLLSGLLYPGLQALDEEYLKVDAQFGGIDQRKIFTFAEKYLPALGY 204

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	266
3prh_A	388	Tryptophanyl-tRNA synthetase; TRPRS, protein biosy	100.0
3sz3_A	341	Tryptophanyl-tRNA synthetase; structural genomics,	100.0
3n9i_A	346	Tryptophanyl-tRNA synthetase; tryptophan-tRNA liga	100.0
3tzl_A	322	Tryptophanyl-tRNA synthetase; structural genomics,	100.0
1i6k_A	328	TRPRS, tryptophanyl-tRNA synthetase; class I tRNA	100.0
1yi8_B	351	Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.	100.0
2yy5_A	348	Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synt	100.0
2el7_A	337	Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth	100.0
2g36_A	340	Tryptophanyl-tRNA synthetase; TM0492, structural g	100.0
2cyc_A	375	Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacy	100.0
2cya_A	364	Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, st	100.0
2j5b_A	348	Tyrosyl-tRNA synthetase; ligase, protein biosynthe	100.0
3vgj_A	373	Tyrosyl-tRNA synthetase, putative; tyrrs, ligase;	100.0
3jxe_A	392	Tryptophanyl-tRNA synthetase; adenosine triphospha	100.0
3a04_A	372	Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tR	100.0
2yxn_A	322	Tyrosyl-tRNA synthetase; tRNA synthetases class I,	100.0
2cyb_A	323	Tyrosyl-tRNA synthetase; rossmann-fold, structural	100.0
2jan_A	432	Tyrosyl-tRNA synthetase; protein biosynthesis, ami	100.0
2pid_A	356	Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase	100.0
1jil_A	420	Tyrrs, tyrosyl-tRNA synthetase; truncation, based	100.0
2ts1_A	419	Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30	100.0
3p0j_A	690	Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase	100.0
1h3f_A	432	Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA sy	100.0
1y42_X	392	Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tR	100.0
2zp1_A	314	Tyrosyl-tRNA synthetase; tRNA synthetases class I,	100.0
2ip1_A	432	Tryptophanyl-tRNA synthetase; rossmann fold, struc	100.0
1n3l_A	372	Tyrosyl-tRNA synthetase; rossmann fold AS catalyti	100.0
3tze_A	406	Tryptophanyl-tRNA synthetase; structural genomics,	100.0
3hzr_A	386	Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str	100.0
1r6u_A	437	Tryptophanyl-tRNA synthetase; class IC tRNA synthe	100.0
1r6t_A	477	Tryptophanyl-tRNA synthetase; class IC tRNA synthe	100.0
2dlc_X	394	Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligas	100.0
3i05_A	395	Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP	100.0
3hv0_A	393	Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-bin	100.0
3foc_A	451	Tryptophanyl-tRNA synthetase; structural genomics,	100.0
3p0j_A	690	Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase	99.97
1nzj_A	298	Hypothetical protein YADB; Zn cluster, glutamyl T-	98.53
2ja2_A	498	Glutamyl-tRNA synthetase; non-discriminating gluta	98.42
1j09_A	468	Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, r	98.18
3afh_A	488	Glutamyl-tRNA synthetase 2; protein-substrate comp	98.12
2cfo_A	492	Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA s	97.93
3al0_C	592	Glutamyl-tRNA(Gln) amidotransferase subunit C, GL	97.92
4g6z_A	490	Glutamate-tRNA ligase; aminoacyl-tRNA synthetase,	96.83
3aii_A	553	Glutamyl-tRNA synthetase; amino-acyl tRNA syntheta	96.36
3u1f_A	542	Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta	96.29
1qtq_A	553	GLNRS, protein (glutaminyl-tRNA synthetase); gluta	95.84
3h99_A	560	Methionyl-tRNA synthetase; rossmann fold, aminoacy	95.62
2o5r_A	481	Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, g	95.47
3kfl_A	564	Methionyl-tRNA synthetase; parasite, aminoacyl-tRN	95.42
4gri_A	512	Glutamate--tRNA ligase; structural genomics, seatt	95.3
2hz7_A	851	Glutaminyl-tRNA synthetase; rossmann fold, GLNRS c	95.28
4dlp_A	536	Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA	95.1
1irx_A	523	Lysyl-tRNA synthetase; beta sandwitch, zinc-bindin	94.79
1rqg_A	722	Methionyl-tRNA synthetase; translation, dimerizati	94.78
2d5b_A	500	Methionyl-tRNA synthetase; rossmann fold, class 1A	94.33
2csx_A	497	Methionyl-tRNA synthetase; ligase, riken structura	94.24
2x1l_A	524	Methionyl-tRNA synthetase; nucleotide-binding, pro	92.87
4arc_A	880	Leucine--tRNA ligase; ligase-RNA complex, nucleoti	92.13
3c8z_A	414	Cysteinyl-tRNA synthetase; cysteine ligase, rossma	91.05
1gax_A	862	Valrs, valyl-tRNA synthetase; protein-RNA complex,	89.78
3sp1_A	501	Cysteinyl-tRNA synthetase; structural genomics, se	89.66
2v0c_A	878	Aminoacyl-tRNA synthetase; ligase, nucleotide-bind	87.73
1li5_A	461	Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys	85.27
1wkb_A	810	Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e	84.5
3tqo_A	462	Cysteinyl-tRNA synthetase; protein synthesis, liga	82.83
1iq0_A	592	Arginyl-tRNA synthetase; riken structural genomics	82.36
1ile_A	821	Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s	81.07

>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}

Probab=100.00  E-value=1.4e-55  Score=420.81  Aligned_cols=164  Identities=55%  Similarity=0.881  Sum_probs=151.7

Q ss_pred             eEEEecCCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEccc
Q 024523           80 RIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSH  159 (266)
Q Consensus        80 ~iytGi~PTG~lHLGh~ig~i~k~~~LQ~g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~qSd  159 (266)
                      +||||++|||.+|||||+|+|++|++||++++++|+||||||+|++.+++++++++++++++|+|+|+||+|++||+||+
T Consensus        37 ri~sG~~PTG~lHLGhyvGal~~~~~LQ~~~~~~~~IaD~hAlt~~~~~~~lr~~~~~~aa~~lA~GlDp~kt~if~qS~  116 (388)
T 3prh_A           37 TIFSGIQPSGSVTLGNYIGAMKQFVELQHDYNSYFCIVDQHAITVPQDRLELRKNIRNLAALYLAVGLDPEKATLFIQSE  116 (388)
T ss_dssp             EEEEEECCCSCCBHHHHHHTHHHHHHTTTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEGGG
T ss_pred             eEEEeeCCCCcchHHHHHHHHHHHHHHHccCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHhCCChhHeEEEeccc
Confidence            49999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhHHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEecCcchHHHHHHHHHHHH
Q 024523          160 VRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAER  239 (266)
Q Consensus       160 ~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ~~hleLaRdiA~r  239 (266)
                      |++|.+++|+|+|.+++++|+|+.+||++.+..  +++++|+|+||+|||||||+|++|+||||+||+||+|||||+|+|
T Consensus       117 v~~~~el~w~l~~~~~~~~L~R~~~fk~k~~~~--~~~~~g~~~YPvLQAADIl~~~ad~vPvG~DQ~~hleltRdia~r  194 (388)
T 3prh_A          117 VPAHAQAGWMMQCVAYIGELERMTQFKDKSKGN--EAVVSGLLTYPPLMAADILLYGTDLVPPGEDQKQHLELTRNLAER  194 (388)
T ss_dssp             STHHHHHHHHHHTTSCHHHHHTTC------------CCBHHHHSCHHHHHHHHHTTTCCEECCCSSCHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHhhccHHHHHhhhhHhHHhhcc--CCCcchhHhhHHHHHHHHHHhCCCEEEechhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999886653  679999999999999999999999999999999999999999999


Q ss_pred             hhhhhC
Q 024523          240 VNYLYG  245 (266)
Q Consensus       240 ~n~~yg  245 (266)
                      ||+.||
T Consensus       195 fn~~y~  200 (388)
T 3prh_A          195 FNKKYN  200 (388)
T ss_dssp             HHHHTC
T ss_pred             hCcccC
Confidence            999998

>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}

Probab=100.00  E-value=1.1e-55  Score=415.54  Aligned_cols=167  Identities=50%  Similarity=0.860  Sum_probs=161.9

Q ss_pred             CceEEEecCCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEc
Q 024523           78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ  157 (266)
Q Consensus        78 ~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~q  157 (266)
                      +++||+|++|||+||||||+|+|++|++||++++++|+||||||++++.+++++++++++++++|+|+|+||+|++||+|
T Consensus         6 ~~~v~sG~~PTG~lHLGhy~g~l~~~~~lQ~~~~~~~~iaD~ha~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~i~~q   85 (341)
T 3sz3_A            6 KPIVLSGVQPSGELSIGNYLGALRQWQQMQDDYDCQYCVVDLHAITVRQDPQALHEATLDALAICLAVGVDPKKSTLFVQ   85 (341)
T ss_dssp             SCEEEEEECSSSCCBHHHHHHTGGGHHHHHHHSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTSEEEEG
T ss_pred             CCEEEeCcCCCCcccHHHHHHHHHHHHHHHhcCeEEEEEecceeEcCCCCHHHHHHHHHHHHHHHHHcCCChhhcEEEec
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhhHHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEecCcchHHHHHHHHHH
Q 024523          158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA  237 (266)
Q Consensus       158 Sd~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ~~hleLaRdiA  237 (266)
                      |+|++|.+|+|+|+|.+++++|+|+++||++..+++ +++++|+|+||+|||||||+|++|+||||+||+||+||+||+|
T Consensus        86 S~v~~~~el~~~l~~~~~~~~l~R~~~~k~~~~~~~-~~~~~g~~~YP~lQaaDil~~~ad~vpvG~DQ~~hlel~Rdia  164 (341)
T 3sz3_A           86 SHVPEHAQLGWVLNCYTQMGELSRMTQFKDKSARYA-NDVNAGLFGYPVLMAADILLYGAHQVPVGSDQKQHLELARDIA  164 (341)
T ss_dssp             GGCTHHHHHHHHHHTTSCHHHHHTCHHHHHHHHHHG-GGCCHHHHHHHHHHHHHHHTTTCSEECCCGGGHHHHHHHHHHH
T ss_pred             cchhhhHHHHHHHHhhccHHHHHHHHHHHHHHhhcc-CCCChhhHHhHHHHHHHHHHcCCCEEEeccchHHHHHHHHHHH
Confidence            999999999999999999999999999999887764 6799999999999999999999999999999999999999999


Q ss_pred             HHhhhhhC
Q 024523          238 ERVNYLYG  245 (266)
Q Consensus       238 ~r~n~~yg  245 (266)
                      +|||++||
T Consensus       165 ~rfn~~yg  172 (341)
T 3sz3_A          165 TRFNNIYS  172 (341)
T ss_dssp             HHHHHHHC
T ss_pred             HHhchhcc
Confidence            99999998

>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1

Probab=100.00  E-value=2.5e-55  Score=413.75  Aligned_cols=169  Identities=54%  Similarity=0.921  Sum_probs=161.4

Q ss_pred             CCCceEEEecCCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEE
Q 024523           76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVF  155 (266)
Q Consensus        76 ~~~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if  155 (266)
                      ..++++|+|++|||++|||||+|+|++|++||++++++|+||||||++++.+++++++++++++++|+|+|+||+|++||
T Consensus        13 ~~~~~i~sG~~PTG~lHLGh~vg~l~~~~~lQ~~~~~~~~iaD~hA~t~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~if   92 (346)
T 3n9i_A           13 SSKPIVFSGAQPSGELTIGNYMGALRQWVQMQDDYDCIYCIVDLHAITARQDPALLRKRTLDTLALYLACGIDPKKSTIF   92 (346)
T ss_dssp             --CCEEEEEECSCSCCBHHHHHHTHHHHHTTTTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHHTCCTTTSEEE
T ss_pred             CCCCEEEECcCCCCcccHHHHHHHHHHHHHHHhhCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCccceEEE
Confidence            33679999999999999999999999999999999999999999999998999999999999999999999999999999


Q ss_pred             EcccchhhhHHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEecCcchHHHHHHHH
Q 024523          156 VQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRE  235 (266)
Q Consensus       156 ~qSd~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ~~hleLaRd  235 (266)
                      +||+|++|.+++|+|+|.+++++|+|+.+||++..+.+ +++++|+|+||+|||||||+|++|+||||+||+||+||+||
T Consensus        93 ~qS~v~~~~el~~~l~~~~~~~~l~R~~~~k~~~~~~~-~~~~~g~~~YP~lQAaDil~~~ad~vpvG~DQ~~hleltRd  171 (346)
T 3n9i_A           93 VQSHVPEHSQLSWALNCYTYFGELSRMTQFKDKSARYA-ENINAGLFDYPVLMAADILLYQTNQVPVGEDQKQHLELSRD  171 (346)
T ss_dssp             EGGGCTHHHHHHHHHHTTSBHHHHHTCHHHHHHHHHSG-GGCBHHHHHHHHHHHHHHHTTTCSEECCCGGGHHHHHHHHH
T ss_pred             eccccccchHHHHHHHHHhhHHHHHHHHHHHHHHhccC-CCCCchhHHhHHHHHHHHHHhCceEEEeccchHHHHHHHHH
Confidence            99999999999999999999999999999999876643 67899999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhC
Q 024523          236 LAERVNYLYG  245 (266)
Q Consensus       236 iA~r~n~~yg  245 (266)
                      +|+|||++||
T Consensus       172 ia~rfn~~yg  181 (346)
T 3n9i_A          172 IASRFNNLYG  181 (346)
T ss_dssp             HHHHHHHHHS
T ss_pred             HHHHhccccC
Confidence            9999999986

>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*

Probab=100.00  E-value=1.4e-54  Score=405.01  Aligned_cols=182  Identities=38%  Similarity=0.664  Sum_probs=169.4

Q ss_pred             CceEEEecCCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEc
Q 024523           78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ  157 (266)
Q Consensus        78 ~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~q  157 (266)
                      ..++|+|++|||.||||||+|+|++|++||+|++++|+|||+||+|++.+++++++++++++++|+|+|+||+|++||+|
T Consensus         3 ~~~vysG~~PTg~lHlG~~lg~l~~~~~lQ~g~~~~~~iaD~ha~~~~~~~~~l~~~~~~~~~~~lA~Gldp~k~~i~~q   82 (322)
T 3tzl_A            3 AMRVLTGLQPSGDLHIGNYFGAIKQMVDAQEKSQMFMFIANYHAMTSSQDGEKLKQNSLKAAAAFLSLGIDPQKSVFWLQ   82 (322)
T ss_dssp             -CCBEEEECCSSCCBHHHHHHTHHHHHHTTTTSCCEEEECHHHHTTTCCCHHHHHHHHHHHHHHHHHTTCCTTTSEEEEG
T ss_pred             ceEEEEccCCCccccHHHHHHHHHHHHHHhcCCCEEEEEecCeeecCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEEC
Confidence            45899999999999999999988999999999999999999999999889999999999999999999999999999999


Q ss_pred             ccchhhhHHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEecCcchHHHHHHHHHH
Q 024523          158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA  237 (266)
Q Consensus       158 Sd~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ~~hleLaRdiA  237 (266)
                      |+|++|.++.|+++|.+++++|+|+.+||++....  +++++|+|+||+||||||++|++|+||||.||+||++++||+|
T Consensus        83 S~~~~~~el~~~l~~~~~~~~l~r~~~~K~~~~~~--~~~~~g~f~YP~LQAaDil~~~~~~vpvG~DQ~~hi~l~Rdia  160 (322)
T 3tzl_A           83 SDVKEVMELYWILSQFTPMGLLERAHSYKDKVAKG--LSASHGLFSYPVLMAADILLFDTRIVPVGKDQIQHVEIARDIA  160 (322)
T ss_dssp             GGCTHHHHHHHHHGGGCBHHHHHSCHHHHHHHHTT--CCCBHHHHHHHHHHHHHHHHTTCSEEECCGGGHHHHHHHHHHH
T ss_pred             CcchhHHHHHHHHhccCcHHHHHhhhHHHHHHccC--CCCchHHHHHHHHHHHHHHHhCCcEEEeccchHHHHHHHHHHH
Confidence            99999999999999999999999999999876652  6899999999999999999999999999999999999999999


Q ss_pred             HHhhhhhCCCc------------------ccccCCCCC-ceec
Q 024523          238 ERVNYLYGGRK------------------WKKLGGRGG-AIFK  261 (266)
Q Consensus       238 ~r~n~~yg~~~------------------~~k~g~~~~-~if~  261 (266)
                      +|||++||..+                  |+||+||.+ +||-
T Consensus       161 ~r~n~~~g~~f~~P~~~~~~~~~~l~~l~G~KMSKS~~n~I~L  203 (322)
T 3tzl_A          161 LKVNNEWGEIFTLPEARVNEEVAVVVGTDGAKMSKSYQNTIDI  203 (322)
T ss_dssp             HHHHHHHCSCSCCCEEECCCSSCCCBCTTSSBCCGGGTCCCBS
T ss_pred             HHhcccccCCCCCchhhhccccccccCCCCCcCCCCCCCceec
Confidence            99999886211                  679999876 6663

>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A

Probab=100.00  E-value=3.3e-53  Score=396.36  Aligned_cols=183  Identities=52%  Similarity=0.801  Sum_probs=170.7

Q ss_pred             ceEEEecCCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcc
Q 024523           79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQS  158 (266)
Q Consensus        79 ~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~qS  158 (266)
                      +++|+|++|||.||||||+|+|++|++||+|++++|+|||+||+|++.+++++++++++++++|+|+|+||+|++||+||
T Consensus         2 ~~vysG~~PTG~lHlGn~vg~l~~~~~lQ~g~~~~~~IaD~ha~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~if~qS   81 (328)
T 1i6k_A            2 KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRLAALYLAVGIDPTQATLFIQS   81 (328)
T ss_dssp             CEEEEEECCCSCCBHHHHHHTHHHHHHHTTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEGG
T ss_pred             CEEEEeeCCCCcccHHHHHHHHHHHHHHHcCCcEEEEEeCceeecCCCCHHHHHHHHHHHHHHHHHhCCChhhcEEEecC
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhHHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEecCcchHHHHHHHHHHH
Q 024523          159 HVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAE  238 (266)
Q Consensus       159 d~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ~~hleLaRdiA~  238 (266)
                      +|++|.++.|+++|.+++++|+|+++||++..+ + +++++|+|+||+||||||++|++|+||||+||++|++++||+|+
T Consensus        82 ~~~~~~~l~w~l~~~~~~~~l~r~~~~k~~~~~-~-~~~~~g~f~YPvLQaaDil~~~~~~vpvG~DQ~~~iel~Rdia~  159 (328)
T 1i6k_A           82 EVPAHAQAAWMLQCIVYIGELERMTQFKEKSAG-K-EAVSAGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAE  159 (328)
T ss_dssp             GCTHHHHHHHHHHHHSCHHHHHTCHHHHHHHTT-C-SSCCHHHHTHHHHHHHHHHTTTCSEEECCGGGHHHHHHHHHHHH
T ss_pred             chhhhhHHHHHHhccccHHHHHHHHHHHHHHhc-c-CCCCchhhccHHHHHHHHHHhCCCEEecccchHHHHHHHHHHHH
Confidence            999999999999999999999999999998765 3 68999999999999999999999999999999999999999999


Q ss_pred             HhhhhhCCCc------------------c--cccCCCCCc----eeccC
Q 024523          239 RVNYLYGGRK------------------W--KKLGGRGGA----IFKVD  263 (266)
Q Consensus       239 r~n~~yg~~~------------------~--~k~g~~~~~----if~~p  263 (266)
                      |||+.||..+                  |  +||+||.+.    ||-..
T Consensus       160 r~n~~yg~~f~~P~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~d  208 (328)
T 1i6k_A          160 RFNKRYGELFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLD  208 (328)
T ss_dssp             HHHHHHCSCCCCCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTC
T ss_pred             HhCcccccccCCCeeeeccccccccCCCCCccCCCCCCCCcCceeeecC
Confidence            9999987211                  5  799998763    76433

>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*

Probab=100.00  E-value=4e-53  Score=399.13  Aligned_cols=191  Identities=32%  Similarity=0.489  Sum_probs=173.5

Q ss_pred             CCCCCCCceEEEecCCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeeec-CCCHHHHHHHHHHHHHHHHHcCcCCC
Q 024523           72 ASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNS  150 (266)
Q Consensus        72 ~~~~~~~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~g~~v~ilIADlhA~~~-~~~~e~ir~~~~~~~~~~lA~GlDp~  150 (266)
                      .++.++++++|+|++|||+||||||+|+|++|++||+.++++|+|||+||+++ +.+++++++++++++++|+|+|+||+
T Consensus        16 ~~~~~~~~~vysG~~PTG~lHLGn~~g~l~~~~~lQ~~~~~~~~IaD~ha~~~~~~~~e~i~~~~~~~~~~~la~Gldp~   95 (351)
T 1yi8_B           16 PAATPARPRVLTGDRPTGALHLGHLAGSLQNRVRLQDEAELFVLLADVQALTDHFDRPEQVRENVLAVALDYLAAGLDPQ   95 (351)
T ss_dssp             -----CCSEEEEEECCSSCCBHHHHHHTHHHHHHHTSSSEEEEEECHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCTT
T ss_pred             ccccCCCcEEEEeeCCCCCccHHHHHHHHHHHHHHHHhCCeEEEEecchhhcCCCCCHHHHHHHHHHHHHHHHHhCCChh
Confidence            33346789999999999999999999999999999999999999999999998 78999999999999999999999999


Q ss_pred             ceEEEEcccchhhhHHHHHHhccCCHHHHhchhhHHHhhhhcC-CCCccchhhhchHHHHHhhhhcCCCEEEecCcchHH
Q 024523          151 KASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQH  229 (266)
Q Consensus       151 Kt~if~qSd~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g-~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ~~h  229 (266)
                      |++||+||+|++|.++.|+|+|.+++++|+|+.+||++....+ ++++++|+|+||+||||||++|++|+||||+||++|
T Consensus        96 k~~i~~qS~~~~~~el~~~l~~~~~v~~l~r~~~~k~~~~~~~f~~~~~~g~f~YPvLQAaDil~~~~~~vpvG~DQ~~h  175 (351)
T 1yi8_B           96 KTTCVVQSAVPELAELTVYFLNLVTVSHLRQNPTVKAEIAQKGYGERVPAGFFVYPVSQAADIAAFGATLVPVGDDQLPM  175 (351)
T ss_dssp             TEEEEEGGGCTHHHHHHHHHHTTSBHHHHHTCHHHHHHHHHHTCTTCCBHHHHHHHHHHHHHHHHHTCSEEEECGGGHHH
T ss_pred             hcEEEEcCchhhHHHHHHHHhccCCHHHHHhhhHHHHHHhhcCCCCCCchHhhhhHHHHHhhHHhcCCCEEEecCCcHHH
Confidence            9999999999999999999999999999999999999887554 467999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhCC----------Cc-------cc-ccCCCCC-ceecc
Q 024523          230 LELTRELAERVNYLYGG----------RK-------WK-KLGGRGG-AIFKV  262 (266)
Q Consensus       230 leLaRdiA~r~n~~yg~----------~~-------~~-k~g~~~~-~if~~  262 (266)
                      ++++||+|+|||+.||.          ..       |+ ||+||.+ +||-.
T Consensus       176 i~l~rdia~r~n~~yg~~f~~P~~~~~~~~~l~~ldG~~KMSKS~~n~I~L~  227 (351)
T 1yi8_B          176 LEQTREIVRRFNALYAPVLAEPQAQLSRVPRLPGLDGQAKMSKSLGNAIALG  227 (351)
T ss_dssp             HHHHHHHHHHHHHHTCSCSCCCEEEECSSCSCCCTTSSSCCCTTTTCCCBTT
T ss_pred             HHHHHHHHHHHHhhcccccCCCeeeeecCccccCCCCccccCCCCCCeecCC
Confidence            99999999999999881          01       54 9999977 67643

>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}

Probab=100.00  E-value=4.7e-53  Score=398.23  Aligned_cols=168  Identities=44%  Similarity=0.724  Sum_probs=158.5

Q ss_pred             CceEEEecCCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEc
Q 024523           78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ  157 (266)
Q Consensus        78 ~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~q  157 (266)
                      ++++|+|++|||.||||||+|+|++|++||++++++|+|||+||+|++.+++++++++++++++|+|+||||+|++||+|
T Consensus         4 ~~~i~sG~~PTG~lHLGn~vg~l~~~~~lQ~~~~~~~~IaD~ha~~~~~d~~~i~~~~~~~~~~~lA~Gldp~k~~if~q   83 (348)
T 2yy5_A            4 MKRALTGIQASGKQHLGNYLGVMQSLIELQEQCQLFVFVADLHSITVDFQPQALKQNNFDLVRTLLAVGLDPQKACLFLQ   83 (348)
T ss_dssp             CCEEEEEECCCTTCBHHHHHHTGGGHHHHHHHSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEG
T ss_pred             CeEEEEeeCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEcChhhccCCCCHHHHHHHHHHHHHHHHHhCCChhHeEEEEC
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhhHHHHHHhccCCHHHHhchhhHHHhhhhcC-----CCCccchhhhchHHHHHhhhhcCCCEEEecCcchHHHHH
Q 024523          158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-----GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLEL  232 (266)
Q Consensus       158 Sd~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g-----~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ~~hleL  232 (266)
                      |+|++|.++.|+++|.+++++|+|+.+||++.++.+     .+++++|+|+||+||||||++|++|+||||+||++|+||
T Consensus        84 S~~~~~~el~w~l~~~~~~~~l~R~~~~k~~~~~~~~~~~~~~~~~~g~~~YPvLQaaDil~~~a~~vpvG~DQ~~~lel  163 (348)
T 2yy5_A           84 SDLLEHSMMGYLMMVQSNLGELQRMTQFKAKKAEQTRNPNGTLNIPTGLLTYPALMAGDILLYQPDIVPVGNDQKQHLEL  163 (348)
T ss_dssp             GGCHHHHHHHHHHHHHSBHHHHHHCHHHHTTC-----------CCBTHHHHHHHHHHHHHHTTCCSEEECCGGGHHHHHH
T ss_pred             CcccchhHHHHHHHhhccHHHHhchHHHHHHHHhhccccccCCCCChhhhhhHHHHHHHHHHhCccEEEecccHHHHHHH
Confidence            999999999999999999999999999998765532     367999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhC
Q 024523          233 TRELAERVNYLYG  245 (266)
Q Consensus       233 aRdiA~r~n~~yg  245 (266)
                      +||+|+|||+.||
T Consensus       164 ~Rdia~r~n~~yg  176 (348)
T 2yy5_A          164 TRDLAQRIQKKFK  176 (348)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHhhhhcc
Confidence            9999999999998

>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}

Probab=100.00  E-value=1.9e-52  Score=392.48  Aligned_cols=183  Identities=51%  Similarity=0.846  Sum_probs=170.2

Q ss_pred             ceEEEecCCCCcchhhhHHHHHHHHHHHhc-c-CcEEEEEecceeeecC--CCHHHHHHHHHHHHHHHHHcCcCCCceEE
Q 024523           79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-S-YETLFFIVDLHAITLP--YDTQQLSKATRETAAIYLACGIDNSKASV  154 (266)
Q Consensus        79 ~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~-g-~~v~ilIADlhA~~~~--~~~e~ir~~~~~~~~~~lA~GlDp~Kt~i  154 (266)
                      +++|+|++|||+||||||+|+|++|++||+ | ++++|+|||+||++++  .+++++++++++++++|+|+|+||+|++|
T Consensus         2 ~~vy~G~~PTg~lHlGh~~g~l~~~~~lQ~~G~~~~~~~IaD~~a~~~~~~~~~~~i~~~~~~~~~~~la~Gldp~k~~i   81 (337)
T 2el7_A            2 KRVLSGIQPSGEIHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDPSTLAQRTFEAALVNIAAGLDPEKVTL   81 (337)
T ss_dssp             CCEEEEECSCSCCBHHHHHTHHHHHHHHHHHHGGGEEEEECGGGGGGSTTTSCHHHHHHHHHHHHHHHHHHTCCTTTSEE
T ss_pred             CEEEEeeCCCCcccHHHHHHHHHHHHHHHhcCCCCEEEEEeCceeecCCCCCCHHHHHHHHHHHHHHHHHhCCChhheEE
Confidence            489999999999999999999999999999 7 9999999999999997  79999999999999999999999999999


Q ss_pred             EEcccchhhhHHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEecCcchHHHHHHH
Q 024523          155 FVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTR  234 (266)
Q Consensus       155 f~qSd~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ~~hleLaR  234 (266)
                      |+||+|++|.++.|+++|.+++++|+|+.+||++.+.  .+++++|+|+||+||||||++|++|+||||.||++|++++|
T Consensus        82 ~~qS~~~~~~el~~~l~~~~~~~~l~r~~~~k~r~~~--~~~~~~g~f~YPvLQaaDil~~~~~lvp~G~DQ~~~i~l~r  159 (337)
T 2el7_A           82 FVQSHVPEHTELSWVFTTLTPLGDLTRMTQFKDKASK--QETVWSGLLMYPVLQAADILIYKADTVPVGEDQVQHIELTR  159 (337)
T ss_dssp             EEGGGSTHHHHHHHHHHHTSBHHHHHTSHHHHHHTTS--SSCCBHHHHHHHHHHHHHHHHTTCCEEECCGGGCHHHHHHH
T ss_pred             EEcCcchhhHHHHHHHHccCCHHHHHHhHHHHHHhcc--CCCCChHHHHhHHHHHhhHHhhCCcEEEcccchHHHHHHHH
Confidence            9999999999999999999999999999999987643  36899999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhC---------CC----c-----c-cccCCCCC-ceeccC
Q 024523          235 ELAERVNYLYG---------GR----K-----W-KKLGGRGG-AIFKVD  263 (266)
Q Consensus       235 diA~r~n~~yg---------~~----~-----~-~k~g~~~~-~if~~p  263 (266)
                      |+|+|||+.||         ..    .     | +||+||.+ +||-.+
T Consensus       160 dla~r~n~~~g~~f~~P~~~~~~~~p~l~gldG~~KMSKS~~n~I~L~d  208 (337)
T 2el7_A          160 EIARRFNHLFGETFPEPQALLNPEAPRVPGIDGKAKMSKSLGNTIGLLE  208 (337)
T ss_dssp             HHHHHHHHHHSSCCCCCEEECCTTSCCCBCTTSSSBCCTTTTCCCBSSS
T ss_pred             HHHHHHHhhcCcccCCCeeecccccccccCCCCccccCCCCCCeeeCcC
Confidence            99999999998         11    1     6 89999987 676433

>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}

Probab=100.00  E-value=2.3e-52  Score=392.53  Aligned_cols=184  Identities=42%  Similarity=0.690  Sum_probs=167.2

Q ss_pred             CCceEEEecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeec-CCCHHHHHHHHHHHHHHHHHcCcCCCceEE
Q 024523           77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSKASV  154 (266)
Q Consensus        77 ~~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~-~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~i  154 (266)
                      +.+++|+|++|||.||||||+|+|++|++||+ |++++++|||+||+|+ +.|++++++++++++++|+|+|+||+|++|
T Consensus        11 ~~~~v~~G~~PTG~lHLGn~~g~l~~~~~lQ~~G~~~~~~IaD~ha~t~~~~dp~~~~~~~~~~~~~~lA~Gldp~k~~i   90 (340)
T 2g36_A           11 HHMRILSGMRPTGKLHIGHLVGALENWVKLQEEGNECFYFVADWHALTTHYDDVSKLKEYTRDLVRGFLACGIDPEKSVI   90 (340)
T ss_dssp             -CCEEEEEECCCSSCBHHHHHTHHHHHHHHHHTTCEEEEEECHHHHHHHHTTCCTTHHHHHHHHHHHHHHTTCCTTTSEE
T ss_pred             CCCeEEEeeCCCCcccHHhHHHHHHHHHHHHHCCCCEEEEEecceeecCCCCCHHHHHHHHHHHHHHHHHhCCChhHeEE
Confidence            46899999999999999999999999999999 7999999999999998 788999999999999999999999999999


Q ss_pred             EEcccchhhhHHHHHHhccCCHHHHhchhhHHH---hhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEecCcchHHHH
Q 024523          155 FVQSHVRAHVELMWLLSSATPIGWLNKMIQFKE---KSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLE  231 (266)
Q Consensus       155 f~qSd~~~~~eL~w~Ls~~~tv~rL~R~~~~ke---~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ~~hle  231 (266)
                      |+||+|++|.++.|+++|.+++++|+|+.+||+   +.+.  .+++++|+|+||+||||||++|++|+||||+||++|++
T Consensus        91 f~qS~~~~~~el~~~l~~~~~v~~l~r~~~~k~~~~r~~~--~~~~~~g~f~YPvLQAaDil~~~~~~vpvG~DQ~~hi~  168 (340)
T 2g36_A           91 FVQSGVKEHAELALLFSMIVSVSRLERVPTYKEIKSELNY--KDLSTAGFLIYPVLQAADILIYKAEGVPVGEDQVYHIE  168 (340)
T ss_dssp             EEGGGCTHHHHHHHHHHTTSCHHHHHTCHHHHTC---------CCCSHHHHTHHHHHHHHHHTTTCSEEEECGGGHHHHH
T ss_pred             EECCchHHHHHHHHHHHccCCHHHHHHhHHHHhHHHHhcc--CCCCChHHhhhHHHHHhhHHHhCCCEEEcccchHHHHH
Confidence            999999999999999999999999999999998   5432  35789999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhCCCc-----------------ccccCCCCC-ceecc
Q 024523          232 LTRELAERVNYLYGGRK-----------------WKKLGGRGG-AIFKV  262 (266)
Q Consensus       232 LaRdiA~r~n~~yg~~~-----------------~~k~g~~~~-~if~~  262 (266)
                      ++||+|+|||+.||..+                 |+||+||.+ +||-.
T Consensus       169 l~rdia~r~n~~yg~~f~~P~~~~~~~~~l~gldG~KMSKS~~n~I~L~  217 (340)
T 2g36_A          169 LTREIARRFNYLYDEVFPEPEAILSRVPKLPGTDGRKMSKSYGNIINLE  217 (340)
T ss_dssp             HHHHHHHHHHHHSCCCCCCCEEEECCSCCCCCTTSSCCCGGGTCCCBTT
T ss_pred             HHHHHHHHhhhhcccccCCchhhhccccccCCCCccccCCCCCCeEeee
Confidence            99999999999988110                 679999876 66643

>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}

Probab=100.00  E-value=7.1e-48  Score=366.14  Aligned_cols=163  Identities=21%  Similarity=0.290  Sum_probs=151.8

Q ss_pred             CCCceEEEecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecC---CCHHHHHHHH-HHHH----HHHHHcC
Q 024523           76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP---YDTQQLSKAT-RETA----AIYLACG  146 (266)
Q Consensus        76 ~~~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~---~~~e~ir~~~-~~~~----~~~lA~G  146 (266)
                      ++++++|+|++|||.+|||||++.+.+|++||+ |++++|+|||+||++++   .+++++++++ ++++    ++|+|+|
T Consensus        31 ~~~~~vy~G~~PTg~lHlG~yl~~l~~~~~lQ~~G~~~~~~iaD~ha~~~~~~g~~~e~i~~~~~~~~~~~~~~~~la~G  110 (375)
T 2cyc_A           31 GAPLQHYIGFEISGYIHLGTGLMAGAKIADFQKAGIKTRVFLADWHSWINDKLGGDLEVIQEVALKYFKVGMEKSIEVMG  110 (375)
T ss_dssp             TCCCBEEEEECCCSCCBHHHHHHHHHHHHHHHHTTCBCEEEECHHHHHHTTGGGGCHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred             CCCcEEEeCCCCCCCcCchHHHHHHHHHHHHHHCCCcEEEEecCcEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            357899999999999999998888899999999 89999999999999985   3899999999 8898    9999999


Q ss_pred             cCCCceEEEEcccchhhhHHHHHH----hccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEe
Q 024523          147 IDNSKASVFVQSHVRAHVELMWLL----SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPV  222 (266)
Q Consensus       147 lDp~Kt~if~qSd~~~~~eL~w~L----s~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpv  222 (266)
                      +||+|++||+||+|+++. ++|.+    ++.++++||.|+.+||.+.   ..+.+++|+|+||+||||||++|++|+|||
T Consensus       111 ~dp~k~~i~~qS~~~~~~-~~~~~~~~~~~~~~~~~m~~~~~~k~r~---~~~~i~~g~f~YP~LQaaDil~~~~~~vp~  186 (375)
T 2cyc_A          111 GDPKKVEFVLASEILEKG-DYWQTVIDISKNVTLSRVMRSITIMGRQ---MGEAIDFAKLIYPMMQVADIFYQGVTIAHA  186 (375)
T ss_dssp             CCGGGSEEEETHHHHTBH-HHHHHHHHHHTTSBHHHHHHTGGGGTCC---CCTTCBTHHHHHHHHHHHHHHHTTCSEEEE
T ss_pred             CCccceEEEEcchhhhhh-HHHHHHHHHhceeEHHHHhccchhhhhc---cCCCCChHHHHHHHHHHHHHHHhCCCeecc
Confidence            999999999999999987 77876    9999999999999988753   235689999999999999999999999999


Q ss_pred             cCcchHHHHHHHHHHHHhhh
Q 024523          223 GEDQKQHLELTRELAERVNY  242 (266)
Q Consensus       223 G~DQ~~hleLaRdiA~r~n~  242 (266)
                      |.||++|++++||+|+|||+
T Consensus       187 G~DQ~~~i~l~rdla~r~n~  206 (375)
T 2cyc_A          187 GMDQRKAHVIAIEVAQKLRY  206 (375)
T ss_dssp             EGGGHHHHHHHHHHGGGCSS
T ss_pred             cchHHHHHHHHHHHHHHhCC
Confidence            99999999999999999997

>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}

Probab=100.00  E-value=3.8e-47  Score=359.83  Aligned_cols=184  Identities=19%  Similarity=0.260  Sum_probs=157.5

Q ss_pred             CCCceEEEecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecC---CCHHHHHHHHHHHHHHHHHcCcCCCc
Q 024523           76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSK  151 (266)
Q Consensus        76 ~~~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~---~~~e~ir~~~~~~~~~~lA~GlDp~K  151 (266)
                      ++++++|+||+|||.+|||| ++.+.+|++||+ |++++|+|||+||++++   .+++++++++++++++|+|+|+||+|
T Consensus        33 ~~~~~iy~G~~PTg~lHlG~-l~~l~~~~~lQ~~G~~~~~~iaD~~a~~~~ps~~~~e~i~~~~~~~~~~~la~G~dp~k  111 (364)
T 2cya_A           33 GARIKGYIGYEPSGVAHIGW-LVWMYKVKDLVEAGVDFSVLEATWHAYINDKLGGDMDLIRAAARIVRRVMEAAGVPVER  111 (364)
T ss_dssp             CSCCEEEEEECCCSSCBTHH-HHHHHHHHHHHHTTCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred             CCCCEEEeccCCCCCccHhH-HHHHHHHHHHHHCCCCEEEEEeCcchhhCCCCCCCHHHHHHHHHHHHHHHHHhCCCccc
Confidence            45789999999999999999 667789999999 89999999999999985   69999999999999999999999999


Q ss_pred             eEEEEcccchhhhHHHHH----HhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEecCcch
Q 024523          152 ASVFVQSHVRAHVELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQK  227 (266)
Q Consensus       152 t~if~qSd~~~~~eL~w~----Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ~  227 (266)
                      ++||+||+|+++ +++|.    +++.+++++|+|+.+|+.+..  ++..+++|+|+||+||||||++|++|+||||.||+
T Consensus       112 ~~i~~qS~~~~~-~~~~~~~~~l~~~~t~~~l~r~~~~k~r~~--~~~~i~~g~~~YP~LQaaDil~~~~~~v~~G~DQ~  188 (364)
T 2cya_A          112 VRFVDAEELASD-KDYWGLVIRVAKRASLARVRRALTIMGRRA--EEAEVDASKLIYPLMQVSDIFYMDLDIALGGMDQR  188 (364)
T ss_dssp             CEEEEHHHHHTC-HHHHHHHHHHHHTSCHHHHHTTC------C--CGGGSCTHHHHHHHHHHHHHHHTTCSEEEEEGGGH
T ss_pred             eEEEecchhhcc-hHHHHHHHHHHCcCcHHHHHcCchhhhhhc--CCCCccchhhhhHHHHHhhHHhcCCCEEeccchHH
Confidence            999999999876 56666    999999999999999887643  22458999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhh----------hCCC----------------cccccCCC-CC-ceeccC
Q 024523          228 QHLELTRELAERVNYL----------YGGR----------------KWKKLGGR-GG-AIFKVD  263 (266)
Q Consensus       228 ~hleLaRdiA~r~n~~----------yg~~----------------~~~k~g~~-~~-~if~~p  263 (266)
                      +|++++||+|+|||+.          -|.+                .++||+|| ++ +||-..
T Consensus       189 ~~~~l~rdla~r~~~~~p~~l~~~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~~~~I~L~d  252 (364)
T 2cya_A          189 KAHMLARDVAEKLGRKKPVAIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSKPETAVFVVD  252 (364)
T ss_dssp             HHHHHHHHHHTTTTCCCCEEEEECCCBCSSCC----------------CBCCSSSGGGSCBTTC
T ss_pred             HHHHHHHHHHHHcCCCCceeeccceeeCCCcccccccccccccccccccccCCCCCCCEeeccC
Confidence            9999999999999852          1333                25899999 44 787543

>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}

Probab=100.00  E-value=5.7e-47  Score=356.73  Aligned_cols=184  Identities=20%  Similarity=0.243  Sum_probs=149.0

Q ss_pred             CCCceEEEecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCC---CHHHHHHHHHHHHHHHHHcCcCCCc
Q 024523           76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY---DTQQLSKATRETAAIYLACGIDNSK  151 (266)
Q Consensus        76 ~~~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~---~~e~ir~~~~~~~~~~lA~GlDp~K  151 (266)
                      ++++++|+|++|||.||||||++.+.+|++||+ |++++++|||+||++++.   +++++++++++++++|+|+|+||+|
T Consensus        38 ~~~~~vy~G~~PTg~lHlGhyl~~l~~~~~lQ~~G~~~~~~i~D~~a~~~~~~~~~~e~i~~~~~~~~~~~la~Gldp~k  117 (348)
T 2j5b_A           38 GRIFTAYNGFEPSGRIHIAQALITVMNTNNMIECGGQMIIYIADWFAKMNLKMNGDINKIRELGRYFIEVFKACGINLDG  117 (348)
T ss_dssp             TCCEEEEEEECCCSSCBHHHHHHHHHHHHHHHHTTEEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred             CCCCEEEeccCCCCCCchhHHHHHHHHHHHHHHcCCcEEEEeccchhhhCCCCCCCHHHHHHHHHHHHHHHHHhcCCccc
Confidence            468899999999999999998888889999999 899999999999999853   8999999999999999999999999


Q ss_pred             eEEEEcccc-hhhhHHHHHHhc----cCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhc---CCCEEEec
Q 024523          152 ASVFVQSHV-RAHVELMWLLSS----ATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY---QSDFVPVG  223 (266)
Q Consensus       152 t~if~qSd~-~~~~eL~w~Ls~----~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l---~adlvpvG  223 (266)
                      ++||+||+| ++|. ++|.+.+    .++++++.++.+++.+.   +.+++++|+|+||+||||||++|   ++|+||||
T Consensus       118 ~~i~~qs~~~~~~~-~~~~~~~~v~~~~~~~~m~~~~~~~~r~---~~~~i~~g~f~YP~lQaaDil~~~~~~~~~~~~G  193 (348)
T 2j5b_A          118 TRFIWASEFIASNP-SYIERMLDIAEFSTISRVKRCCQIMGRN---ESDCLKASQIFYPCMQAADVFELVPEGIDICQLG  193 (348)
T ss_dssp             EEEEEHHHHHHHCH-HHHHHHHHHHHHHHHHHHTC--------------------CCHHHHHHHHHHHSSTTCCSEECCB
T ss_pred             eEEEECCHhhhhhh-HHHHHHHHHHhheeHHHHHhhhhhhhhh---ccCCcChHHHhhHHHHHHHHHHHhcCCCcEEEec
Confidence            999999998 5565 7887654    88888888887776542   22578999999999999999999   99999999


Q ss_pred             CcchHHHHHHHHHHHHhhhhhC----------CCcc-cccCCCC--CceeccC
Q 024523          224 EDQKQHLELTRELAERVNYLYG----------GRKW-KKLGGRG--GAIFKVD  263 (266)
Q Consensus       224 ~DQ~~hleLaRdiA~r~n~~yg----------~~~~-~k~g~~~--~~if~~p  263 (266)
                      .||++|++++||+|+|||+.|-          ..-+ +|||||.  ++||-.+
T Consensus       194 ~DQ~~~i~l~Rdia~r~~~~~p~~~~~~~l~gL~dg~~KMSKS~~~~~I~L~d  246 (348)
T 2j5b_A          194 IDQRKVNMLAIEYANDRGLKIPISLSHHMLMSLSGPKKKMSKSDPQGAIFMDD  246 (348)
T ss_dssp             GGGHHHHHHHHHHHHHTTCCCCEEEEBCCCCCTTCSSCCCSTTCGGGSCBTTC
T ss_pred             cChHHHHHHHHHHHHHhCCCCceeecCccccCCCCcccccccCCCCCeEeecC
Confidence            9999999999999999998762          1114 7999997  3787544

>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}

Probab=100.00  E-value=5.4e-46  Score=353.15  Aligned_cols=183  Identities=21%  Similarity=0.294  Sum_probs=159.4

Q ss_pred             CCCceEEEecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecC---CCHHHHHHHHHHHHHHHHHcCcCCCc
Q 024523           76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSK  151 (266)
Q Consensus        76 ~~~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~---~~~e~ir~~~~~~~~~~lA~GlDp~K  151 (266)
                      ++++++|+|++|||.+||||.+..+.+|++||+ ||+++|+|||+||++++   .+++++++++++++++|+|+|+||+|
T Consensus        54 ~~~~~iy~G~~PTg~lHlG~gvl~~~~~~~lQ~~G~~~~~lIaD~ha~i~d~~~~~~~~i~~~~~~~~~~~~a~G~dp~k  133 (373)
T 3vgj_A           54 KRKLICYDGFEPSGRMHIAQGLLKSIIVNKLTSNGCTFIFWIADWFAHLNNKMSGDLKKIKKVGSYFIEVWKSCGMNMEN  133 (373)
T ss_dssp             CSSCEEEEEECCCSSCBHHHHHHHHHHHHHHHTTTCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCSTT
T ss_pred             CCCceEEeCCCCCCCceehhhHHHHHHHHHHHHCCCcEEEEEecceeEecCCCCCCHHHHHHHHHHHHHHHHHcCCChhh
Confidence            457899999999999999996432236889999 99999999999999983   58999999999999999999999999


Q ss_pred             eEEEEcccch-hhhHHHHHH----hccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEecCcc
Q 024523          152 ASVFVQSHVR-AHVELMWLL----SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQ  226 (266)
Q Consensus       152 t~if~qSd~~-~~~eL~w~L----s~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ  226 (266)
                      ++||+||+|+ +|.+++|.+    +..++++|+.++.+++.+.   ..+++++|+|+||+||||||++|++|+||||.||
T Consensus       134 ~~i~~~S~~~~~~~~l~~~~~~~i~~~~tv~rm~~~~~~~~r~---~~~~~~~g~f~YPlLQaaDil~l~ad~vpgG~DQ  210 (373)
T 3vgj_A          134 VQFLWASEEINKKPNEYWSLVLDISRSFNINRMKRCLKIMGRS---EGEENYCSQILYPCMQCADIFFLNVDICQLGIDQ  210 (373)
T ss_dssp             EEEEEHHHHHHHSHHHHHHHHHHHHTTSBHHHHHTTGGGGTCC---TTSCCBTHHHHHHHHHHHHHHHTTCSEECCBGGG
T ss_pred             eEEEeChhHHhhhhHHHHHHHHHHHccCcHHHHHhhhHHHhhh---ccCCCChHHHHHHHHHHhcccccCCcEEEcchhh
Confidence            9999999998 899999975    4578999999998876432   1257999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhhhhhCCC-----------cc-cccCCCC--Cceec
Q 024523          227 KQHLELTRELAERVNYLYGGR-----------KW-KKLGGRG--GAIFK  261 (266)
Q Consensus       227 ~~hleLaRdiA~r~n~~yg~~-----------~~-~k~g~~~--~~if~  261 (266)
                      ++|++++||+|+|||++|+.-           -| +||+||.  ++||-
T Consensus       211 ~~~l~l~Rdla~r~~~~~~~~~l~~p~l~gL~dG~~KMSKS~~~~~I~L  259 (373)
T 3vgj_A          211 RKVNMLAREYCDIKKIKKKPVILSHGMLPGLLEGQEKMSKSDENSAIFM  259 (373)
T ss_dssp             HHHHHHHHHHHHHHTCSCCCEEEEBCCCCCSSTTCCSCCSSSTTCCCBT
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEeCCeeecCCCCCCCCcCCCCCCeeec
Confidence            999999999999999887521           14 5999997  37773

>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}

Probab=100.00  E-value=3.6e-46  Score=356.44  Aligned_cols=174  Identities=18%  Similarity=0.310  Sum_probs=156.6

Q ss_pred             CCCceEEEecCCCCcchhhhHHHHH-HHHHHHhc--cCcEEEEEecceeeec-C-CCHHHHHHHHHHHHHHHHHcCcCCC
Q 024523           76 SVKKRIVSGVQPTGSIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITL-P-YDTQQLSKATRETAAIYLACGIDNS  150 (266)
Q Consensus        76 ~~~~~iytGi~PTG~lHLGh~ig~i-~k~~~LQ~--g~~v~ilIADlhA~~~-~-~~~e~ir~~~~~~~~~~lA~GlDp~  150 (266)
                      ++++++|+|++|||.||||||++++ .+|  ||+  |++++|+|||+||+++ + .+++++++++++++++|+|+|+||+
T Consensus        71 ~~p~~i~sG~~PTG~lHLGh~v~~~~~~~--lQ~~~g~~~~i~IaD~ha~~~~~~~~~e~i~~~~~~~~~~~lA~GlDp~  148 (392)
T 3jxe_A           71 GRGFFLYTGRGPSGPMHIGHIIPFFATKW--LQEKFGVNLYIQITDDEKFLFKENLTFDDTKRWAYDNILDIIAVGFDPD  148 (392)
T ss_dssp             TCCCEEEEEECCSSCCBHHHHHHHHHHHH--HHHHHCCEEEEEECHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCCCTT
T ss_pred             CCCeEEEeccCCCCchhHHHHHHHHHHHH--HHHhcCCceEEEecchHHhhcCCCCCHHHHHHHHHHHHHHHHHhCcCcc
Confidence            5689999999999999999999986 667  887  8899999999999997 4 6999999999999999999999999


Q ss_pred             ceEEEEcccchhhhHHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhc-CCCEEEecCcchHH
Q 024523          151 KASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY-QSDFVPVGEDQKQH  229 (266)
Q Consensus       151 Kt~if~qSd~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l-~adlvpvG~DQ~~h  229 (266)
                      |++||+||+|++|+++.|.+++.+++++++++.+|+        +++++|+|+||+|||||||++ ++|+||||+||+||
T Consensus       149 kt~i~~qS~~~~~~~~~~~l~~~~t~~~~~~~~~~~--------~~~~~g~f~YP~LQaaDil~~~~a~~vpvG~DQ~~h  220 (392)
T 3jxe_A          149 KTFIFQNSEFTKIYEMAIPIAKKINFSMAKAVFGFT--------EQSKIGMIFFPAIQIAPTFFERKRCLIPAAIDQDPY  220 (392)
T ss_dssp             SEEEEETTTSTHHHHHHHHHHHHSBHHHHHHHHCCC--------TTSBHHHHHHHHHHHGGGGSSSSCEEEEEEGGGHHH
T ss_pred             ceEEEECchhHHHHHHHHHHHhhCCHHHHhhhhccC--------CCCchHHHHHHHHHHhhHHhhcCCceeecccchHHH
Confidence            999999999999999999999999999998876542        578999999999999999999 69999999999999


Q ss_pred             HHHHHHHHHHhhhhh----------CCCcc--cccCCCCC--cee
Q 024523          230 LELTRELAERVNYLY----------GGRKW--KKLGGRGG--AIF  260 (266)
Q Consensus       230 leLaRdiA~r~n~~y----------g~~~~--~k~g~~~~--~if  260 (266)
                      ++|+||+|+|||+.-          |.+ |  +||+||.+  +||
T Consensus       221 l~l~Rdla~r~n~~~p~~l~~~~l~gLd-G~~~KMSKS~~ns~I~  264 (392)
T 3jxe_A          221 WRLQRDFAESLGYYKTAALHSKFVPSLT-SLSGKMSASKPETAIY  264 (392)
T ss_dssp             HHHHHHHTGGGTSCCCEEEEECCCCCSS-CSSSCCCTTSGGGCCB
T ss_pred             HHHHHHHHHHcCCCCCeeeecccccCCC-CCccccccCCCCCeee
Confidence            999999999999511          111 3  69999875  566

>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*

Probab=100.00  E-value=5.9e-46  Score=352.73  Aligned_cols=160  Identities=26%  Similarity=0.392  Sum_probs=144.5

Q ss_pred             CCCceEEEecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCC--CHHHHHHHHHHHHHHHHHcCcCCCce
Q 024523           76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY--DTQQLSKATRETAAIYLACGIDNSKA  152 (266)
Q Consensus        76 ~~~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~--~~e~ir~~~~~~~~~~lA~GlDp~Kt  152 (266)
                      +++++||||++|||.||||||++++ +|+.+|+ +++++|+|||+||+|++.  +++.+++++++++++|+||||||+|+
T Consensus        68 gk~~~v~sG~~PTG~lHLGhyv~~~-~~~~lq~~~~~~~~~IaD~ha~t~~~~~~~e~~r~~~~~~~~~~lA~GlDP~kt  146 (372)
T 3a04_A           68 GERVAVLTGFMPSGKFHFGHKLTVD-QLIYLQKNGFKVFVAIADAEAFAVRRIGREEAVRIAVEEYIANMIALGLDPKDT  146 (372)
T ss_dssp             TCCCEEEEEECCCSCCBHHHHHHHH-HHHHHHHTTCEEEEEECHHHHHHTTCCCHHHHHHHHHHTTHHHHHHHTCCTTTC
T ss_pred             CCCCEEEeCcCCCcHhHHHHHHHHH-HHHHHHhCCCeEEEEEecchhhccCCCCCHHHHHHHHHHHHHHHHHcCCChHHc
Confidence            5789999999999999999999876 6667886 899999999999999854  56779999999999999999999999


Q ss_pred             EEEEccc-chhhhHHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhh--------cCCCEEEec
Q 024523          153 SVFVQSH-VRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILL--------YQSDFVPVG  223 (266)
Q Consensus       153 ~if~qSd-~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~--------l~adlvpvG  223 (266)
                      +||+||+ ..+|.++.|.+++.+++++++++.           ...+.|.++||+|||||||+        |++++||||
T Consensus       147 ~if~qS~~~~~~~~l~~~~~~~~~~~~~~~~~-----------~~~~~~~~~yP~lqAaDil~~~~d~~~gy~a~~VPVG  215 (372)
T 3a04_A          147 EFYFQTNRGTPYFRLIQLFSGKVTAAEMEAIY-----------GELTPAKMMASLTQAADILHVQLDEYGGYRHVVVPVG  215 (372)
T ss_dssp             EEEEGGGSCHHHHHHHHHHTTSSCHHHHHHHH-----------SSCCHHHHHHHHHHHHHHHGGGSGGGTCCCCEEEEEE
T ss_pred             chhhhccchHHHHHHHHHHHhhhhHHHHhhhh-----------hccCcccccCCcchhHHHhhhcCccccCccceecccc
Confidence            9999999 568999999999999999887663           24678999999999999999        566699999


Q ss_pred             CcchHHHHHHHHHHHHhhhhhCCC
Q 024523          224 EDQKQHLELTRELAERVNYLYGGR  247 (266)
Q Consensus       224 ~DQ~~hleLaRdiA~r~n~~yg~~  247 (266)
                      +||+||+|||||+|+|||..|+..
T Consensus       216 ~DQ~~hleltRdiA~rfn~~~~~~  239 (372)
T 3a04_A          216 ADQDPHLRLTRDLADRMAGVVELE  239 (372)
T ss_dssp             GGGHHHHHHHHHHHHHTTTTSCCC
T ss_pred             hhhHHHHHHHHHHHHHhcCccccc
Confidence            999999999999999999988753

>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*

Probab=100.00  E-value=5.8e-46  Score=346.50  Aligned_cols=186  Identities=16%  Similarity=0.214  Sum_probs=162.1

Q ss_pred             CCCceEEEecCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEecceeeec-CC---------CHHHHHHHH---HHHHH
Q 024523           76 SVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKAT---RETAA  140 (266)
Q Consensus        76 ~~~~~iytGi~PTG~-lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~-~~---------~~e~ir~~~---~~~~~  140 (266)
                      ++++++|+|++|||+ ||||||++ +.+|++||+ |++++++|||+||+|+ |.         +++++++++   +++++
T Consensus        31 ~~~~~vy~G~~PTg~slHlGh~l~-l~~~~~lQ~~g~~~~~~i~D~~a~~~dp~g~~~~R~~l~~e~i~~n~~~~~~~~~  109 (322)
T 2yxn_A           31 QGPIALVCGFDPTADSLHLGHLVP-LLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQVA  109 (322)
T ss_dssp             HSCCEEEEEECCSSSSCBHHHHHH-HHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHG
T ss_pred             CCCCEEEEeecCCCCcccHHHHHH-HHHHHHHHHcCCcEEEEEccceeeecCCCCcccccccCCHHHHHHHHHHHHHHHH
Confidence            457899999999999 99999995 569999999 8999999999999998 53         899999999   78888


Q ss_pred             HHHHcCcCCCceEEEEcccchh-hhHHHHH--HhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhc--
Q 024523          141 IYLACGIDNSKASVFVQSHVRA-HVELMWL--LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY--  215 (266)
Q Consensus       141 ~~lA~GlDp~Kt~if~qSd~~~-~~eL~w~--Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l--  215 (266)
                      .|+|+|+||+|++||.||+|+. +.++.|+  +++.++++|+.|+.++|++... .++++++|+|+||+||||||++|  
T Consensus       110 ~~la~g~dp~k~~i~~qs~w~~~~~~l~~l~~~~~~~~v~~m~~~~~~k~r~~~-~~~~is~g~f~YP~LQaaDil~l~~  188 (322)
T 2yxn_A          110 PFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNR-EDQGISFTEFSYNLLQGYDFACLNK  188 (322)
T ss_dssp             GGSCSSSGGGCCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHTTCHHHHHHHHC-TTCCCCHHHHTHHHHHHHHHHHHHH
T ss_pred             HHHHcCCCccceEEEecchhhccCcHHHHHHHHhccccHHHHhhhHHHHHHhcc-CCCCccchhhhHHHHHHHHHHHHhc
Confidence            8999999999999999999976 4777777  8999999999999998876542 12578999999999999999999  


Q ss_pred             --CCCEEEecCcchHHHHHHHHHHHHhhh--hhCCCc-------ccccCCCCC-ceeccC
Q 024523          216 --QSDFVPVGEDQKQHLELTRELAERVNY--LYGGRK-------WKKLGGRGG-AIFKVD  263 (266)
Q Consensus       216 --~adlvpvG~DQ~~hleLaRdiA~r~n~--~yg~~~-------~~k~g~~~~-~if~~p  263 (266)
                        ++|+++||.||++|++++||+|+|||+  .++...       |+|||||.+ +||-.+
T Consensus       189 ~~~~~v~~gG~DQ~~~i~l~rdla~r~n~~~~~~l~~pll~gldG~KMSKS~~n~I~L~d  248 (322)
T 2yxn_A          189 QYGVVLCIGGSDQWGNITSGIDLTRRLHQNQVFGLTVPLITKADGTKFGKTEGGAVWLDP  248 (322)
T ss_dssp             HHCEEEEEECTTCHHHHHHHHHHHHHHHCCCCEEEECCCCBCTTSCBTTEETTEECBSST
T ss_pred             cCCceEEecCchhHHHHHHHHHHHHHhCCCCceeeccCccCCCCcccccCCCCCeeeccC
Confidence              999999999999999999999999986  222111       789999987 777443

>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}

Probab=100.00  E-value=1.7e-44  Score=335.93  Aligned_cols=181  Identities=24%  Similarity=0.365  Sum_probs=160.7

Q ss_pred             CCCceEEEecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCC-CHHHHHHHHHHHHHHHHHcCcCCCceE
Q 024523           76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGIDNSKAS  153 (266)
Q Consensus        76 ~~~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~-~~e~ir~~~~~~~~~~lA~GlDp~Kt~  153 (266)
                      ++++++|+|++|||++||||++ ++.+|++||+ |++++|+|||+||++++. +++++++++++++++|+|+|+||+|++
T Consensus        30 ~~~~~vy~G~~PTg~lHlG~l~-~l~~~~~lq~~g~~~~~~i~D~~a~~~d~~~~~~i~~~~~~~~~~~~a~Gldp~k~~  108 (323)
T 2cyb_A           30 KEKPRAYVGYEPSGEIHLGHMM-TVQKLMDLQEAGFEIIVLLADIHAYLNEKGTFEEIAEVADYNKKVFIALGLDESRAK  108 (323)
T ss_dssp             CSCCEEEEEECCCSCCBHHHHH-HHHHHHHHHHTTCEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTCCTTTCE
T ss_pred             CCCCEEEECcCCCCcchHHHHH-HHHHHHHHHHCCCcEEEEECCceeEcCCCCCHHHHHHHHHHHHHHHHHhCCCccceE
Confidence            4578999999999999999974 6789999999 899999999999999965 999999999999999999999999999


Q ss_pred             EEEcccch---hhhHHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEecCcchHHH
Q 024523          154 VFVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHL  230 (266)
Q Consensus       154 if~qSd~~---~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ~~hl  230 (266)
                      ||+||+|+   +|+++.|.++|.+++++++|+.++..  +.  .++.++|+|+||+|||||++++++|+||+|.||++|+
T Consensus       109 i~~qS~~~~~~~~~~~~~~l~~~~t~~~l~~~~~~~~--~~--~~~~~~g~~~YP~lqaaD~l~~~~~~v~~G~DQ~~~~  184 (323)
T 2cyb_A          109 FVLGSEYQLSRDYVLDVLKMARITTLNRARRSMDEVS--RR--KEDPMVSQMIYPLMQALDIAHLGVDLAVGGIDQRKIH  184 (323)
T ss_dssp             EEEGGGTTTSHHHHHHHHHHHHHSBHHHHHHHTTTTC--SC--SSSCBTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHH
T ss_pred             EEEcchhccchHHHHHHHHHhCccCHHHHhccchhhc--cc--cCCCCchhhhhHHHHHHHHHhcCCCEEEechhhHHHH
Confidence            99999995   78999999999999999999876542  22  1345999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhh----------CCCcccccCCCCC-ceecc
Q 024523          231 ELTRELAERVNYLY----------GGRKWKKLGGRGG-AIFKV  262 (266)
Q Consensus       231 eLaRdiA~r~n~~y----------g~~~~~k~g~~~~-~if~~  262 (266)
                      +++||+|++||+.-          |.+ |+||+||.+ +||..
T Consensus       185 ~l~rdla~~~~~~~p~~l~~pll~~l~-G~KMSKS~~n~I~l~  226 (323)
T 2cyb_A          185 MLARENLPRLGYSSPVCLHTPILVGLD-GQKMSSSKGNYISVR  226 (323)
T ss_dssp             HHHHHHGGGGTCCCCEEEEECCCBCTT-SSBCCTTTTCSCBTT
T ss_pred             HHHHHHHHhcCCCCceEEecCcccCCC-CCcccCCcCceeCCC
Confidence            99999999998631          111 799999977 67643

>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}

Probab=100.00  E-value=2.5e-44  Score=347.37  Aligned_cols=184  Identities=13%  Similarity=0.139  Sum_probs=161.0

Q ss_pred             CCCceEEEecCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEecceeeec-C--------CCHHHHHHHHHHH---HHH
Q 024523           76 SVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P--------YDTQQLSKATRET---AAI  141 (266)
Q Consensus        76 ~~~~~iytGi~PTG~-lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~-~--------~~~e~ir~~~~~~---~~~  141 (266)
                      .+++++|+|++|||+ |||||+++ +.+|++||+ |++++++|||+||+|+ |        .+++++++|++++   ++.
T Consensus        30 ~~~~~iy~G~dPTg~sLHLGhlv~-l~~l~~lQ~~G~~~i~lIgD~ta~igdpsk~~~R~~~~~e~i~~n~~~~~~~~~~  108 (432)
T 2jan_A           30 RGPMTVYAGFDPTAPSLHAGHLVP-LLTLRRFQRAGHRPIVLAGGATGMIGDPRDVGERSLNEADTVAEWTERIRGQLER  108 (432)
T ss_dssp             HSCCEEEEEECCSSSSCBGGGHHH-HHHHHHHHHTTCEEEEEECHHHHHHHCCCCTTTSGGGHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeeCCCCCCcCHHHHHH-HHHHHHHHHCCCcEEEEEcCcEEEccCCcccccccCCCHHHHHHHHHHHHHHHHH
Confidence            457899999999996 99999774 569999999 8999999999999998 6        6789999999866   667


Q ss_pred             HHHcCcCCCceEEEEcccchhh-hHHHHH--HhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhc---
Q 024523          142 YLACGIDNSKASVFVQSHVRAH-VELMWL--LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY---  215 (266)
Q Consensus       142 ~lA~GlDp~Kt~if~qSd~~~~-~eL~w~--Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l---  215 (266)
                      |+|+|+||+|++||+||+|+++ .++.|+  +++.+++++|.|+.+||++.   .++++++|+|+||+||||||++|   
T Consensus       109 ~La~G~dp~k~~i~~nsdw~~~~~~l~~lr~l~~~~tv~~m~~~~~~k~r~---~~~~is~~ef~YPlLQaaDil~l~~~  185 (432)
T 2jan_A          109 FVDFDDSPMGAIVENNLEWTGSLSAIEFLRDIGKHFSVNVMLARDTIRRRL---AGEGISYTEFSYLLLQANDYVELHRR  185 (432)
T ss_dssp             HSCCSSSTTCCEEEETHHHHSSCBHHHHHHHTGGGCBHHHHHHSHHHHHHT---STTCCBHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCCCceEEEECchhcccCcHHHHHHHHhccCcHHHHhcchHHhhhh---cCCCcchHHHHHHHHHHHHHHHHhcc
Confidence            8899999999999999999874 577788  89999999999999999876   13678999999999999999999   


Q ss_pred             -CCCEEEecCcchHHHHHHHHHHHHhhhh--hCCCc-------ccccCCCCC--ceeccC
Q 024523          216 -QSDFVPVGEDQKQHLELTRELAERVNYL--YGGRK-------WKKLGGRGG--AIFKVD  263 (266)
Q Consensus       216 -~adlvpvG~DQ~~hleLaRdiA~r~n~~--yg~~~-------~~k~g~~~~--~if~~p  263 (266)
                       ++|+||||.||++|++++||+|+|||+.  |+...       |+|||||.+  +||-.+
T Consensus       186 ~~~~i~~gG~DQ~~ni~lgrdlarr~~~~~~~~l~~plL~~ldG~KMSKS~~nsaI~L~d  245 (432)
T 2jan_A          186 HGCTLQIGGADQWGNIIAGVRLVRQKLGATVHALTVPLVTAADGTKFGKSTGGGSLWLDP  245 (432)
T ss_dssp             HCCCEEEECSTTHHHHHHHHHHHHHHHCCCCEEEECCCCBCTTSCBTTBCSSSCBCBSST
T ss_pred             CCCcEEeccHHHHHHHHHHHHHHHHhCCCCccccccccccCCCcCcCCCCCCCCeEEccC
Confidence             9999999999999999999999999862  22211       789999876  577544

>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*

Probab=100.00  E-value=8.7e-44  Score=336.11  Aligned_cols=183  Identities=21%  Similarity=0.228  Sum_probs=148.8

Q ss_pred             CCceEEEecCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEecceeeec-CC---------CHHHHHHHHHHHHHHHHH
Q 024523           77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYLA  144 (266)
Q Consensus        77 ~~~~iytGi~PTG~-lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~-~~---------~~e~ir~~~~~~~~~~lA  144 (266)
                      +|+++|+|++|||+ |||||++ .+.+|++||+ |++++|+|||+||+|+ |.         +++++++|+++++++|+|
T Consensus        45 ~~~~vy~G~~PTg~sLHLGhl~-~l~~~~~lQ~~G~~~~~lIaD~hal~~dp~g~~~~R~~l~~e~i~~n~~~~~~~~~a  123 (356)
T 2pid_A           45 FPQTIYCGFDPTADSLHVGHLL-ALLGLFHLQRAGHNVIALVGGATARLGDPSGRTKEREALETERVRANARALRLGLEA  123 (356)
T ss_dssp             -CCEEEEEECCSSSSCBHHHHH-HHHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeecCCCCcccHHHHH-HHHHHHHHHHCCCcEEEEEccceeeecCCcccccccccCCHHHHHHHHHHHHHHHHH
Confidence            46899999999997 9999976 5679999999 8999999999999998 42         699999999999999999


Q ss_pred             cCcCCCc-----------eEEEEcccchhhhHHHHHH---hccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHH
Q 024523          145 CGIDNSK-----------ASVFVQSHVRAHVELMWLL---SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMAS  210 (266)
Q Consensus       145 ~GlDp~K-----------t~if~qSd~~~~~eL~w~L---s~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAA  210 (266)
                      + +||++           ++||+||+|..+..+.|++   ++.+++++|.++.+||++...  ++++++|+|+||+||||
T Consensus       124 ~-lDp~~~~~qs~~~~~~~~i~~ns~w~~~~~~~~~l~~~~~~~~v~~m~~~~~~k~r~~~--~~~is~g~f~YPvLQAa  200 (356)
T 2pid_A          124 L-AANHQQLFTDGRSWGSFTVLDNSAWYQKQHLVDFLAAVGGHFRMGTLLSRQSVQLRLKS--PEGMSLAEFFYQVLQAY  200 (356)
T ss_dssp             H-HHHHHHHSCCSSCCCCEEEEETHHHHTTCBHHHHHHHHGGGSBHHHHHHCHHHHHHHTS--TTCCBHHHHHHHHHHHH
T ss_pred             h-cChhhccccccCCCcceEEEechHhhhhccHHHHHHHHhcceeHHHHhcchHHHHhhcc--CCCCchHHHHHHHHHHH
Confidence            9 99855           9999999997766566654   668999999999888775432  35789999999999999


Q ss_pred             hhhhc----CCCEEEecCcchHHHHHHHHHHHHhhhh--hCCCc-------ccccCCCCC-ceeccC
Q 024523          211 DILLY----QSDFVPVGEDQKQHLELTRELAERVNYL--YGGRK-------WKKLGGRGG-AIFKVD  263 (266)
Q Consensus       211 DIl~l----~adlvpvG~DQ~~hleLaRdiA~r~n~~--yg~~~-------~~k~g~~~~-~if~~p  263 (266)
                      ||++|    ++|+||||.||++|++++||+|+|||+.  ++...       |+|||||.+ +||-.+
T Consensus       201 Dil~l~~~~~~~i~p~G~DQ~~~i~l~rdla~r~n~~~~~~l~~pll~~ldG~KMSKS~~naI~L~d  267 (356)
T 2pid_A          201 DFYYLFQRYGCRVQLGGSDQLGNIMSGYEFINKLTGEDVFGITVPLITSTTGAKLGKSAGNAVWLNR  267 (356)
T ss_dssp             HHHHHHHHHCCCEEEEEGGGHHHHHHHHHHHHHHSSCCCEEEEECCCC-------------CCBSST
T ss_pred             HHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhCCCCccccccccccCCCcccccCCCCCeeeccC
Confidence            99999    9999999999999999999999999961  22111       789999977 777544

>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*

Probab=100.00  E-value=5.1e-43  Score=337.17  Aligned_cols=182  Identities=16%  Similarity=0.189  Sum_probs=161.8

Q ss_pred             CCCceEEEecCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEecceeeec-CC---------CHHHHHHHHHHHHHHHH
Q 024523           76 SVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYL  143 (266)
Q Consensus        76 ~~~~~iytGi~PTG~-lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~-~~---------~~e~ir~~~~~~~~~~l  143 (266)
                      .+++++|+||+|||+ ||||||++ +.+|++||+ ||+++++|||+||+|+ |.         +++++++|++++.++++
T Consensus        30 ~~~~~iy~G~dPTg~sLHlGh~v~-l~~~~~lQ~~G~~~~~lIgd~ta~igdp~gk~~~R~~l~~e~i~~n~~~~~~~~~  108 (420)
T 1jil_A           30 KEQVTLYCGADPTADSLHIGHLLP-FLTLRRFQEHGHRPIVLIGGGTGMIGDPSGKSEERVLQTEEQVDKNIEGISKQMH  108 (420)
T ss_dssp             HSCCEEEEEECCSSSSCBHHHHHH-HHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeeCCCCCCccHHHHHH-HHHHHHHHHCCCcEEEEEcCceeEecCCCccccccccCCHHHHHHHHHHHHHHHH
Confidence            357899999999999 99999995 569999999 8999999999999998 53         89999999999999999


Q ss_pred             HcCcCC---CceEEEEcccch-hhhHHHHHH--hccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhc--
Q 024523          144 ACGIDN---SKASVFVQSHVR-AHVELMWLL--SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY--  215 (266)
Q Consensus       144 A~GlDp---~Kt~if~qSd~~-~~~eL~w~L--s~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l--  215 (266)
                      ++ +||   +|++||.||+|+ ++.++.|+.  ++.++++||.++.+||++.    ++++++|+|+||+||||||++|  
T Consensus       109 ~~-ld~~~~~k~~i~~ns~w~~~~~~l~~l~~~~~~~tv~~m~~~~~~k~r~----~~~is~~ef~YplLQaaD~l~l~~  183 (420)
T 1jil_A          109 NI-FEFGTDHGAVLVNNRDWLGQISLISFLRDYGKHVGVNYMLGKDSIQSRL----EHGISYTEFTYTILQAIDFGHLNR  183 (420)
T ss_dssp             HH-SCCSSSSSCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHHTCGGGHHHH----TTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HH-hCCCCCCceEEEEchhhhhhccHHHHHHHHhccccHHHHhcchhhhhhc----cCCcchHHHHHHHHHHHHHHHHhc
Confidence            99 888   999999999997 568899885  8999999999999987654    2678999999999999999999  


Q ss_pred             --CCCEEEecCcchHHHHHHHHHHHHh-hh--hhCCCc-------ccccCCCCC-ceeccC
Q 024523          216 --QSDFVPVGEDQKQHLELTRELAERV-NY--LYGGRK-------WKKLGGRGG-AIFKVD  263 (266)
Q Consensus       216 --~adlvpvG~DQ~~hleLaRdiA~r~-n~--~yg~~~-------~~k~g~~~~-~if~~p  263 (266)
                        ++|+||||.||++|++++||+|+|| |.  .|+...       |+|||||.+ +||-.+
T Consensus       184 ~~~~~i~~gG~DQ~~ni~~grdla~r~~~~~~~~~l~~pll~~ldG~KMSKS~~naI~L~d  244 (420)
T 1jil_A          184 ELNCKIQVGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDGKKFGKSESGAVWLDA  244 (420)
T ss_dssp             HHCEEEEEEEGGGHHHHHHHHHHHHHHHCCCCCEEEEECCCBCTTSCBTTBCSSSBCBSST
T ss_pred             cCCCcEEeccHHHHHHHHHHHHHHHHhcCCCCeeEeecccccCCccccccCCCCCeEecCC
Confidence              9999999999999999999999999 74  222211       789999988 787554

>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A

Probab=100.00  E-value=9.7e-44  Score=342.17  Aligned_cols=183  Identities=14%  Similarity=0.199  Sum_probs=153.4

Q ss_pred             CCCceEEEecCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEecceeeec-CC---------CHHHHHHHHHHH---HH
Q 024523           76 SVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRET---AA  140 (266)
Q Consensus        76 ~~~~~iytGi~PTG~-lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~-~~---------~~e~ir~~~~~~---~~  140 (266)
                      .+++++|+||+|||+ ||||||++ +.+|++||+ ||+++++|||+||+|+ |.         +++++++|++++   ++
T Consensus        28 ~~~~~iy~G~dPTg~sLHlGh~v~-l~~l~~lQ~~G~~~i~lIgd~ta~igdpsgk~~~R~~l~~e~i~~n~~~~~~q~~  106 (419)
T 2ts1_A           28 EERVTLYCGFDPTADSLHIGHLAT-ILTMRRFQQAGHRPIALVGGATGLIGDPSGKKSERTLNAKETVEAWSARIKEQLG  106 (419)
T ss_dssp             HSCCEEEEEECCSSSSCBGGGHHH-HHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEeeCCCCCCccHHHHHH-HHHHHHHHHCCCcEEEEEcCceeEecCCCCccccccCCCHHHHHHHHHHHHHHHH
Confidence            457899999999999 99999995 569999999 8999999999999998 53         899999999877   55


Q ss_pred             HHHHcCcCCCceEEEEcccchhhhHHHHHH---hccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhc--
Q 024523          141 IYLACGIDNSKASVFVQSHVRAHVELMWLL---SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY--  215 (266)
Q Consensus       141 ~~lA~GlDp~Kt~if~qSd~~~~~eL~w~L---s~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l--  215 (266)
                      .|+++|+||+|++||.||+|+.+..+.|+|   ++.++++||.+.-+|   +++. ++++++|+|+||+||||||++|  
T Consensus       107 ~~L~~g~dp~k~~i~~ns~w~~~~~~~~~l~~~~~~~tv~rm~~~~~~---k~r~-~~~is~~ef~YPlLQaaDil~l~~  182 (419)
T 2ts1_A          107 RFLDFEADGNPAKIKNNYDWIGPLDVITFLRDVGKHFSVNYMMAKESV---QSRI-ETGISFTEFSYMMLQAYDFLRLYE  182 (419)
T ss_dssp             TSSCSSCSSSCCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHHTSHHH---HTTT-TTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCCCceEEEEchhhhhhchHHHHHHHHhcccCHHHHhccchh---hhcc-CCCcchHHHHHHHHHHHHHHHHhc
Confidence            667889999999999999998766566655   567777766665444   3343 3689999999999999999999  


Q ss_pred             --CCCEEEecCcchHHHHHHHHHHHHh-hh--hhCCCc-------ccccCCCCC-ceeccC
Q 024523          216 --QSDFVPVGEDQKQHLELTRELAERV-NY--LYGGRK-------WKKLGGRGG-AIFKVD  263 (266)
Q Consensus       216 --~adlvpvG~DQ~~hleLaRdiA~r~-n~--~yg~~~-------~~k~g~~~~-~if~~p  263 (266)
                        ++|+||||.||++|++++||+|+|| |.  .|+...       |+|||||.+ +||-.+
T Consensus       183 ~~~~~i~~gG~DQ~~ni~lgrdlarr~~~~~~~~~lt~pll~~ldG~KMSKS~~naI~L~d  243 (419)
T 2ts1_A          183 TEGCRLQIGGSDQWGNITAGLELIRKTKGEARAFGLTIPLVTKADGTKFGKTESGTIWLDK  243 (419)
T ss_dssp             HHCEEEEEEEGGGHHHHHHHHHHHHHHHC--CCEEEEECCCCCTTSCCTTCCSSCCCBSST
T ss_pred             cCCCcEEeccHHHHHHHHHHHHHHHHhcCCCCeeecccccccCCCcccccCCCCCeEecCC
Confidence              9999999999999999999999999 75  232221       789999988 887554

>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*

Probab=100.00  E-value=5.3e-43  Score=354.41  Aligned_cols=181  Identities=20%  Similarity=0.332  Sum_probs=154.8

Q ss_pred             CCCceEEEecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecC---CCHHHHHHHHHHHHHHHHHcCcCCCc
Q 024523           76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSK  151 (266)
Q Consensus        76 ~~~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~---~~~e~ir~~~~~~~~~~lA~GlDp~K  151 (266)
                      ++++++|+|++|||.+||||++....+|++||+ |++++|+|||+||++++   .+++++++++++++++|+|+|+||+|
T Consensus        38 ~~~~~vy~G~~PTg~lHLG~~v~~~~~~~~lQ~~G~~~~~lIaD~ha~~~d~~~~~~e~i~~~~~~~~~~~lA~GlDp~k  117 (690)
T 3p0j_A           38 KPLIRCYDGFEPSGRMHIAQGIFKAVNVNKCTAAGCEFVFWVADWFALMNDKVGGELEKIRIVGRYLIEVWKAAGMDMDK  117 (690)
T ss_dssp             CTTEEEEEEECCCSCCBHHHHHHHHHHHHHHHHTTEEEEEEECCGGGGGGCTTTTHHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred             CCCceEEeeecCCCcchhHhhHHHHHHHHHHHHCCCcEEEEEeeeEEEecCCCcchHHHHHHHHHHHHHHHHHcCCChHH
Confidence            468999999999999999996643236889999 89999999999999983   58899999999999999999999999


Q ss_pred             eEEEEccc-chhhhHHHHHH----hccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEecCcc
Q 024523          152 ASVFVQSH-VRAHVELMWLL----SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQ  226 (266)
Q Consensus       152 t~if~qSd-~~~~~eL~w~L----s~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ  226 (266)
                      ++||+||+ +++|.+++|.+    ++.+|++||.++.+++.+..    .++++|+|+||+||||||++|++|+||||.||
T Consensus       118 ~~i~~qS~~v~~~~~l~~~~~~~i~~~~tv~~m~~~~~~~~r~~----~~i~~g~f~YPlLQAaDil~~~ad~vpvG~DQ  193 (690)
T 3p0j_A          118 VLFLWSSEEITSHADTYWRMVLDIGRQNTIARIKKCCTIMGKTE----GTLTAAQVLYPLMQCCDIFFLKADICQLGLDQ  193 (690)
T ss_dssp             EEEEEHHHHHTTSHHHHHHHHHHHHHTSCHHHHHTTC-----------CCCCCSCSSHHHHHHHHHHHTTCSEECCBGGG
T ss_pred             eEEEechHHHHhhHHHHHHHHHHHHhhCCHHHHHhhhhhhhhcc----CCCchhhHhhHHHHHHHHHhhCCCEEeccccH
Confidence            99999999 57889999976    56899999999999876432    24899999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhhhhhCCC-----------cc-cccCCCCC--cee
Q 024523          227 KQHLELTRELAERVNYLYGGR-----------KW-KKLGGRGG--AIF  260 (266)
Q Consensus       227 ~~hleLaRdiA~r~n~~yg~~-----------~~-~k~g~~~~--~if  260 (266)
                      ++|++++||+|+|||++|+.-           -| +||+||.+  +||
T Consensus       194 ~~~l~l~Rdla~r~n~~~~p~~l~~~~l~gL~dG~~KMSKS~~~~~I~  241 (690)
T 3p0j_A          194 RKVNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIF  241 (690)
T ss_dssp             HHHHHHHHHHHHHTTCCCCCEEEEBCCCCCSSTTCSSCBTTBGGGSCB
T ss_pred             HHHHHHHHHHHHHhCCCCCceEeecCeeecCCCCCcCCCCCCCCCeee
Confidence            999999999999999887521           14 59999974  676

>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*

Probab=100.00  E-value=1.7e-42  Score=334.59  Aligned_cols=184  Identities=16%  Similarity=0.144  Sum_probs=148.7

Q ss_pred             CCCceEEEecCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEecceeeec-C---------CCHHHHHHHHHHHHHHHH
Q 024523           76 SVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P---------YDTQQLSKATRETAAIYL  143 (266)
Q Consensus        76 ~~~~~iytGi~PTG~-lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~-~---------~~~e~ir~~~~~~~~~~l  143 (266)
                      .+++++|+||+|||+ ||||||++ +.+|++||+ ||+++++|||+||+++ |         .+++++++|+.++.+++.
T Consensus        35 ~~~~~vy~G~dPTg~sLHlGh~v~-l~~l~~lQ~~G~~~i~lIgD~ta~igdpsgk~~~R~~l~~e~i~~n~~~~~~ql~  113 (432)
T 1h3f_A           35 GRPLTVKLGADPTRPDLHLGHAVV-LRKMRQFQELGHKVVLIIGDFTGMIGDPSGRSKTRPPLTLEETRENAKTYVAQAG  113 (432)
T ss_dssp             CSCCEEEEEECTTCCSCBHHHHHH-HHHHHHHHHTTCEEEEEECCCC---------------------HHHHHHHHHHHT
T ss_pred             CCCcEEEEcccCCCCCCchhhHHH-HHHHHHHHHCCCCEEEEEccceEEecCCCCcccccccCCHHHHHHHHHHHHHHHH
Confidence            568899999999996 99999995 679999999 8999999999999998 4         246788888877766655


Q ss_pred             HcCcC--CCceEEEEcccchhhhHHHHHH--hccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCE
Q 024523          144 ACGID--NSKASVFVQSHVRAHVELMWLL--SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDF  219 (266)
Q Consensus       144 A~GlD--p~Kt~if~qSd~~~~~eL~w~L--s~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adl  219 (266)
                       +|+|  |+|++||+||+|.++..+.|++  ++.++++++.+..+|+.+...  .+++++|+|+||+||||||++|++|+
T Consensus       114 -~~ld~~p~k~~i~~nSd~~~~~~~~~~l~l~~~~tv~~ml~~~~~k~r~~~--~~~is~~ef~YPlLQaaDil~l~~~l  190 (432)
T 1h3f_A          114 -KILRQEPHLFELRYNSEWLEGLTFKEVVRLTSLMTVAQMLEREDFKKRYEA--GIPISLHELLYPFAQAYDSVAIRADV  190 (432)
T ss_dssp             -TTSCCCTTTEEEEETHHHHTTCBHHHHHHHHTTSBHHHHTTSHHHHHHHHT--TCCCBGGGGTHHHHHHHHHHHHTCSE
T ss_pred             -HHhcCCCCceEEEECCcccccCcHHHHHHHhCcCcHHHHHhhhhHHHHhhc--CCCCCccccchhhHHhhhhhhcCccE
Confidence             8899  9999999999998876666665  899999998888899877643  36799999999999999999999999


Q ss_pred             EEecCcchHHHHHHHHHHHHhhhhh--CCCc-------cc-ccCCCCC-ceeccC
Q 024523          220 VPVGEDQKQHLELTRELAERVNYLY--GGRK-------WK-KLGGRGG-AIFKVD  263 (266)
Q Consensus       220 vpvG~DQ~~hleLaRdiA~r~n~~y--g~~~-------~~-k~g~~~~-~if~~p  263 (266)
                      ||||.||++|++++||+++|||...  +...       |+ |||||.+ +||-.+
T Consensus       191 ~~gG~DQ~~ni~l~rdlarr~~~~~~~~lt~pll~gldG~~KMSKS~~n~I~L~d  245 (432)
T 1h3f_A          191 EMGGTDQRFNLLVGREVQRAYGQSPQVCFLMPLLVGLDGREKMSKSLDNYIGLTE  245 (432)
T ss_dssp             EEEEGGGHHHHHHHHHHHHHTTCCCCEEEEECCCBCTTSSSBCCGGGTCCCBTTS
T ss_pred             EEechHHHHHHHHHHHHHHHhCCCCceEeecccccCCCCccccCcCCCCeeCCCC
Confidence            9999999999999999999998533  1111       64 9999987 777543

>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A

Probab=100.00  E-value=2.8e-42  Score=329.52  Aligned_cols=185  Identities=19%  Similarity=0.189  Sum_probs=155.4

Q ss_pred             CCCceEEEecCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEecceeeec-C---------CCHHHHHHHHHHHHHHHH
Q 024523           76 SVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P---------YDTQQLSKATRETAAIYL  143 (266)
Q Consensus        76 ~~~~~iytGi~PTG~-lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~-~---------~~~e~ir~~~~~~~~~~l  143 (266)
                      .+++++|+|++|||+ ||||||++ +.+|++||+ |++++++|||+||+|+ |         .+++++++|++++.++++
T Consensus        62 ~~~~~vy~G~dPTg~sLHlGhlv~-l~~l~~lQ~~G~~~~~lIgD~haligdpsgk~~~R~~~~~e~i~~n~~~i~~~~~  140 (392)
T 1y42_X           62 TRRIGAYVGIDPTAPSLHVGHLLP-LMPLFWMYLEGYKAFTLIGGSTAKIGDPTGRLKSRDHLSSSDATMNMTKIHYQLK  140 (392)
T ss_dssp             HCCCEEEEEECCCSSSCBGGGHHH-HHHHHHHHHHTCEEEEEECTTTTTTCCCCC-----------CHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeecCCCCCccHHHHHH-HHHHHHHHHcCCcEEEEEcCceeEeCCCCCcchhhccCCHHHHHHHHHHHHHHHH
Confidence            457899999999999 99999995 569999999 8999999999999998 5         277889999999999988


Q ss_pred             HcC-----------cC---CCceEEEEcccc-hhhhHHHHH--HhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchH
Q 024523          144 ACG-----------ID---NSKASVFVQSHV-RAHVELMWL--LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPV  206 (266)
Q Consensus       144 A~G-----------lD---p~Kt~if~qSd~-~~~~eL~w~--Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPv  206 (266)
                      |+|           +|   |+|++||.||+| +++.++.|+  +++.++++++.+.-+||.+...  .+++++|+|+||+
T Consensus       141 a~~~~~~~~~~~~g~d~~~p~ks~i~~ns~~~~~~~~l~~l~~ig~~~~v~rml~~~~~k~r~~~--~~~is~gef~YPl  218 (392)
T 1y42_X          141 KLWENVDTQMRARGYEADWARKRGIVNNNHWWNKQPMLEVLRRVGHALRIGPMLSRDTVKNKMTQ--GDGVSFAEFTYPI  218 (392)
T ss_dssp             HHHHHHHHHHHHTTCCCCTTCEEEEEETHHHHTTCCHHHHHHHHTTTCCHHHHHSSHHHHHTTSS--SSCCCHHHHHHHH
T ss_pred             HHhccccccccccccccCCCcccEEEEccHHHhhhhHHHHHHHHhccCcHHHHhhhhHHHHHhcC--CCCcccHHHHHHH
Confidence            875           45   789999999997 667888888  8999999986666566654321  3679999999999


Q ss_pred             HHHHhhhhc----CCCEEEecCcchHHHHHHHHHHHHhhhhhC---------------CCc-----------ccccCCCC
Q 024523          207 LMASDILLY----QSDFVPVGEDQKQHLELTRELAERVNYLYG---------------GRK-----------WKKLGGRG  256 (266)
Q Consensus       207 LQAADIl~l----~adlvpvG~DQ~~hleLaRdiA~r~n~~yg---------------~~~-----------~~k~g~~~  256 (266)
                      ||||||+++    ++|+||||.||++|++++||+|+|||..|+               ..+           |+|||||.
T Consensus       219 LQAaDil~l~~~~~~~i~~gG~DQ~~ni~~grdlarrfn~~~~~~~~~~~~~p~l~~~~~~~l~~pll~~ldG~KMSKS~  298 (392)
T 1y42_X          219 MQGWDWFELFYQQGVQMQIGGSDQYGNIISGLEVVKAARESEPDPQERKYVTPKTALDECVGFTVPLLTDSSGAKFGKSA  298 (392)
T ss_dssp             HHHHHHHHHHHHHCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHSCCSGGGSCEEEECCCCBCTTCCBTTBCS
T ss_pred             HHHHHHHHHhccCCccEEecCcchHhHHHHHHHHHHHHhhhccccccccccccccccCCccccccccCcCCchhhccCCC
Confidence            999999987    699999999999999999999999998771               111           78999998


Q ss_pred             C-ceeccC
Q 024523          257 G-AIFKVD  263 (266)
Q Consensus       257 ~-~if~~p  263 (266)
                      + +||-.+
T Consensus       299 ~naI~L~d  306 (392)
T 1y42_X          299 GNAIWLDP  306 (392)
T ss_dssp             SSBCBSST
T ss_pred             CCeeeccC
Confidence            7 787554

>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*

Probab=100.00  E-value=1.1e-42  Score=323.27  Aligned_cols=176  Identities=23%  Similarity=0.310  Sum_probs=152.5

Q ss_pred             CCCceEEEecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecC-CCHHHHHHHHHHHHHHHHHcCcCCCceE
Q 024523           76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNSKAS  153 (266)
Q Consensus        76 ~~~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~-~~~e~ir~~~~~~~~~~lA~GlDp~Kt~  153 (266)
                      ++++++|+||+|||.||||| ++.+.+|++||+ |++++|+|||+||++++ .+++++++++++++++|+|+|+|   +.
T Consensus        26 ~~~~~vy~G~~PTg~lHlGh-l~~l~~~~~lQ~~g~~~~~~i~D~~a~~~~~~~~e~i~~~~~~~~~~~~a~G~d---~~  101 (314)
T 2zp1_A           26 KDEKSAYIGFEPSGKIHLGH-YLQIKKMIDLQNAGFDIIILLADLAAYLNQKGELDEIRKIGDYNKKVFEAMGLK---AK  101 (314)
T ss_dssp             SSSEEEEEEECCCSSCBHHH-HHHHHHHHHHHHTTEEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTCC---CE
T ss_pred             CCCCEEEEccCCCCCcchhh-HHHHHHHHHHHHCCCCEEEEEecceEecCCCCCHHHHHHHHHHHHHHHHhcCCC---eE
Confidence            56889999999999999999 667789999999 89999999999999985 48999999999999999999998   89


Q ss_pred             EEEcccchhh---hHHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEecCcchHHH
Q 024523          154 VFVQSHVRAH---VELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHL  230 (266)
Q Consensus       154 if~qSd~~~~---~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ~~hl  230 (266)
                      |++||+|+++   +++.|.+++.+++++|+|+.+|+.+.   . +..++|+|+||+||||||+++++|+||||.||++|+
T Consensus       102 ~~~qs~~~~~~~~~~~~~~l~~~~t~~~l~~~~~~~~~~---~-~~~~~g~~~YP~LQaaDil~~~~~~v~~G~DQ~~~~  177 (314)
T 2zp1_A          102 YVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMELIARE---D-ENPKVAEVIYPIMQVNTSHYLGVDVAVGGMEQRKIH  177 (314)
T ss_dssp             EEEGGGTTTSHHHHHHHHHHHHHSCHHHHHHHTTTTSCC---C-SSCCTHHHHHHHHHHHHHHHHTCSEEEEEGGGHHHH
T ss_pred             EEECChhhcchHHHHHHHHHHCcCcHHHHhccchhhhhc---c-CCCCchhhhhHHHHHHhHHhhCCCEEEcChhHHHHH
Confidence            9999999754   55555599999999999999886542   2 234999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhh--------CCCcc-cccCCCCC-ceecc
Q 024523          231 ELTRELAERVNYLY--------GGRKW-KKLGGRGG-AIFKV  262 (266)
Q Consensus       231 eLaRdiA~r~n~~y--------g~~~~-~k~g~~~~-~if~~  262 (266)
                      +|+||+++  ...+        |.+ | +||+||.+ +||-.
T Consensus       178 ~l~R~i~~--~~~~~~~~~~l~~l~-G~~KMSKS~~~~I~L~  216 (314)
T 2zp1_A          178 MLARELLP--KKVVCIHNPVLTGLD-GEGKMSSSKGNFIAVD  216 (314)
T ss_dssp             HHHHHHSS--SCCEEEEECCCBCTT-SSSBCCTTTTCSCBTT
T ss_pred             HHHHHhcC--CCcEEeeccccccCC-cccccCCCCcceecCC
Confidence            99999996  2222        222 6 79999977 77743

>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*

Probab=100.00  E-value=3.9e-42  Score=332.10  Aligned_cols=177  Identities=18%  Similarity=0.238  Sum_probs=146.6

Q ss_pred             CCCceEEEecCCC-CcchhhhHHHHHHHHHHHhc--cCcEEEEEecceeeec-C-CCHHHHHHHHHHHHHHHHHcCcCCC
Q 024523           76 SVKKRIVSGVQPT-GSIHLGNYLGAIKNWIALQN--SYETLFFIVDLHAITL-P-YDTQQLSKATRETAAIYLACGIDNS  150 (266)
Q Consensus        76 ~~~~~iytGi~PT-G~lHLGh~ig~i~k~~~LQ~--g~~v~ilIADlhA~~~-~-~~~e~ir~~~~~~~~~~lA~GlDp~  150 (266)
                      ++++++|+||+|| |.||||||++++ +.++||+  |++++|+|||+||+++ + .+++++++++++++++|+|+|+||+
T Consensus       100 g~~~~vy~G~dPTag~LHLGh~v~~~-~l~~lQ~~~g~~~i~lI~D~ta~l~~~~~t~e~i~~~~~~~~~~~lA~GlDp~  178 (432)
T 2ip1_A          100 GKPFFLYTGRGPSSDSMHLGHMIPFV-FTKWLQEVFDVPLVIELTDDEKFLFKHKLTINDVKNFARENAKDIIAVGFDPK  178 (432)
T ss_dssp             TCCCEEEEEECCCSSCCBGGGHHHHH-HHHHHHHHHTCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCGG
T ss_pred             CCCeEEEEeecCCCCCccHHHHHHHH-HHHHHHHHcCCeEEEEEecccceeCCCCCCHHHHHHHHHHHHHHHHHhCCCCC
Confidence            4589999999999 789999999987 3334897  8899999999999998 3 5899999999999999999999999


Q ss_pred             ceEEEEcccch--hhhHHHHHHhccCCHHHHhchhhHHHhhhhcC-CCCccchhhhchHHHHHhhhh-----------cC
Q 024523          151 KASVFVQSHVR--AHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL-----------YQ  216 (266)
Q Consensus       151 Kt~if~qSd~~--~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g-~~~i~~g~l~YPvLQAADIl~-----------l~  216 (266)
                      |++||+||+|+  .+.++.|.         ++||++++++.++++ .+++++|+|+||+||||||++           ++
T Consensus       179 k~~i~~nSd~~~~~~~~~~~~---------v~rm~~~~~~k~r~~~~~~~s~g~f~YPlLQAaDil~l~~d~~~~~~~~~  249 (432)
T 2ip1_A          179 NTFIFSDLQYMGGAFYETVVR---------VSRQITGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLPDKT  249 (432)
T ss_dssp             GEEEEEHHHHCSHHHHHHHHH---------HHTSCCHHHHHHTTCCCTTSCHHHHHTHHHHHHTTSGGGCTTTTCCCTTC
T ss_pred             ceEEEeCchhhhhhHHHHHHH---------HHhhhcHHHHHHHhCCCCCCchhhhhHHHHHHHHHHHhccchhhcccCCC
Confidence            99999999997  67777773         568889988887765 567899999999999999999           57


Q ss_pred             CCEEEecCcchHHHHHHHHHHHHhhhh--h--------CCCcc--cccCCCCC--ceeccC
Q 024523          217 SDFVPVGEDQKQHLELTRELAERVNYL--Y--------GGRKW--KKLGGRGG--AIFKVD  263 (266)
Q Consensus       217 adlvpvG~DQ~~hleLaRdiA~r~n~~--y--------g~~~~--~k~g~~~~--~if~~p  263 (266)
                      +|+||||.||++|++|+||+|+|||+.  +        |.+ |  +|||||.+  +||-.+
T Consensus       250 ~~lvp~G~DQ~~~i~l~Rdla~r~~~~~p~~l~~~ll~gLd-G~~~KMSKS~~nsaI~L~d  309 (432)
T 2ip1_A          250 PCLIPCAIDQDPYFRVCRDVADKLKYSKPALLHSRFFPALQ-GSTTKMSASDDTTAIFMTD  309 (432)
T ss_dssp             CEEEEEEGGGHHHHHHHHHHHHHHTSCCCEEEEECCCCCTT-C--------CGGGCCBTTC
T ss_pred             ceEEEeccCcHHHHHHHHHHHHHhCCCCceeeccccccCCC-CCccccCCCCCCCeEeccC
Confidence            999999999999999999999999941  1        111 5  89999965  577544

>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*

Probab=100.00  E-value=8.7e-42  Score=323.84  Aligned_cols=180  Identities=21%  Similarity=0.132  Sum_probs=144.8

Q ss_pred             CCceEEEecCCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeeec-CCCHHHHHHHHH---H--HHHHHHHcCcCCC
Q 024523           77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PYDTQQLSKATR---E--TAAIYLACGIDNS  150 (266)
Q Consensus        77 ~~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~g~~v~ilIADlhA~~~-~~~~e~ir~~~~---~--~~~~~lA~GlDp~  150 (266)
                      +++++|+||+|||.||||||+++++.|..+|.|++++|+|||+||+|+ +.+++++.++..   +  +.+.|+|+|+||+
T Consensus        34 ~~~~vy~G~~PTG~lHlG~~~~~l~~~~~~q~g~~~i~~I~D~ha~t~~~~~~~~l~~~~~~~~~~~i~~~lla~Gldp~  113 (372)
T 1n3l_A           34 RELKIYWGTATTGKPHVAYFVPMSKIADFLKAGCEVTILFADLHAYLDNMKAPWELLELRVSYYENVIKAMLESIGVPLE  113 (372)
T ss_dssp             SCCEEEEEECCSSCCBGGGHHHHHHHHHHHHTTCEEEEEECHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHHHTCCCT
T ss_pred             CCCEEEeCcCCCCcccHHHHHHHHHHHHHHHCCCCEEEEEcCCceeeCCCCCHHHHHHHHHHHHHHHHHHHHHHcCCChh
Confidence            567999999999999999999999777766779999999999999998 677777755553   2  3335799999999


Q ss_pred             ceEEEEcccch---hhhHHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEecCcch
Q 024523          151 KASVFVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQK  227 (266)
Q Consensus       151 Kt~if~qSd~~---~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ~  227 (266)
                      |+.||+||+|+   ++.++.|.++|.+|+.+++++.+  .+.+ + .+++++|+|+||+||||||+++++|+||||.||+
T Consensus       114 k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~~~~~~--~v~~-~-~~~~~~g~~~YP~lQaaDil~~~a~~v~~G~DQ~  189 (372)
T 1n3l_A          114 KLKFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAGA--EVVK-Q-VEHPLLSGLLYPGLQALDEEYLKVDAQFGGIDQR  189 (372)
T ss_dssp             TEEEEEGGGTTTSHHHHHHHHHHHTTSCHHHHHHHTT--TTSC-C-CSSCCHHHHHHHHHHHHHHHHTTCSEEEEEGGGH
T ss_pred             hcEEEECCeecccHHHHHHHHHHHhhCcHHHHHhchh--hhhc-c-cCCCcceeeecchHhhccHHHhcCCEEEcChhHH
Confidence            99999999996   78888999999999999988632  1111 2 3678999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhCCCc-----------ccccCCCCC--ceecc
Q 024523          228 QHLELTRELAERVNYLYGGRK-----------WKKLGGRGG--AIFKV  262 (266)
Q Consensus       228 ~hleLaRdiA~r~n~~yg~~~-----------~~k~g~~~~--~if~~  262 (266)
                      +|++++||++++|++  +...           |+||+||.+  +||-.
T Consensus       190 ~~~~l~rdl~~r~~~--~~p~~l~~pll~gldG~KMSKS~~ns~I~L~  235 (372)
T 1n3l_A          190 KIFTFAEKYLPALGY--SKRVHLMNPMVPGLTGSKMSSSEEESKIDLL  235 (372)
T ss_dssp             HHHHHHHHHGGGGTC--CCCEEEEECCCCCSSCC-------CCSCBTT
T ss_pred             HHHHHHHHHHHHcCC--CCCEEEecCccCCCCcccccCCCCCCeEecc
Confidence            999999999999973  2111           789999965  57643

>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}

Probab=100.00  E-value=5.1e-42  Score=329.06  Aligned_cols=175  Identities=15%  Similarity=0.211  Sum_probs=150.8

Q ss_pred             CCCceEEEecCCCC-cchhhhHHHHH-HHHHHHhc--cCcEEEEEecceeeec-CCCHHHHHHHHHHHHHHHHHcCcCCC
Q 024523           76 SVKKRIVSGVQPTG-SIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNS  150 (266)
Q Consensus        76 ~~~~~iytGi~PTG-~lHLGh~ig~i-~k~~~LQ~--g~~v~ilIADlhA~~~-~~~~e~ir~~~~~~~~~~lA~GlDp~  150 (266)
                      ++++++|+|++||| .+|||||++++ .+|  ||+  |+.++|+|||+||+++ +.+++++++++++++++|+|+|+||+
T Consensus        99 ~~p~~vy~G~~PTg~~lHLGh~v~~~~~~~--lQ~~~g~~~~i~IaD~~a~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~  176 (406)
T 3tze_A           99 NRPFYLYTGRGPSSKTMHIGHTIPFLLCKY--MQDAFKIRLVIQITDDEKFLWKSMRLEDAMAYGRENIKDIVTLGFDPK  176 (406)
T ss_dssp             TCCEEEEEEECCCSSCCBGGGHHHHHHHHH--HHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGG
T ss_pred             CCCeEEEEeeCCCCCcccHHHHHHHHHHHH--HHHhcCCcEEEEeeChHHHcCCCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence            56899999999999 69999999984 666  898  6789999999999976 67999999999999999999999999


Q ss_pred             ceEEEEcccchhhhHHHHHHhccCCHHHHhchhhHHHhhhhcC-CCCccchhhhchHHHHHhhh--------hcCCCEEE
Q 024523          151 KASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDIL--------LYQSDFVP  221 (266)
Q Consensus       151 Kt~if~qSd~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g-~~~i~~g~l~YPvLQAADIl--------~l~adlvp  221 (266)
                      |++||.||+|++        .+..++.+|.|+++|+++.++++ ++++++|+|+||+|||||++        .+++|+||
T Consensus       177 k~~i~~qs~~~~--------~~~~~~~~L~r~~t~~~~~~~~g~~~~~s~g~f~YPlLQaaD~~~~~~p~il~~~a~lvp  248 (406)
T 3tze_A          177 LTYIFSNVEASH--------HFEENILKISKTINLNEAIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFRFIGKGAMCLVP  248 (406)
T ss_dssp             GEEEEEHHHHGG--------GGHHHHHHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGSTTSCTTCEEEEE
T ss_pred             ceEEEeccHhHH--------HHHHHHHHHHhhCCHHHHHHhhCCCCCCcchhhhhHHHhhhhhhccchHHhccCCCeEEe
Confidence            999999999976        12335678999999999988876 57899999999999999965        45799999


Q ss_pred             ecCcchHHHHHHHHHHHHhhhh--h--------CCCcc--cccCCCC--Cceec
Q 024523          222 VGEDQKQHLELTRELAERVNYL--Y--------GGRKW--KKLGGRG--GAIFK  261 (266)
Q Consensus       222 vG~DQ~~hleLaRdiA~r~n~~--y--------g~~~~--~k~g~~~--~~if~  261 (266)
                      ||+||++|++++||+|+|||+.  +        |.+ |  +||+||.  ++||-
T Consensus       249 vG~DQ~~~i~l~Rdla~r~~~~~p~~l~~~~l~gLd-G~~~KMSKS~~~~~I~L  301 (406)
T 3tze_A          249 AAVDQDPFFRLARDKAKALGEKKPSSIYVSLLPDLK-GVNRKMSASDPNSSIYL  301 (406)
T ss_dssp             EEGGGHHHHHHHHHHHHHHTCCCCEEEEECCCCCTT-SCCCCSSCSCGGGSCBT
T ss_pred             eccchHHHHHHHHHHHHHcCCCCceeeccCcccCCC-CCCcCCCCCCCCCcccC
Confidence            9999999999999999999841  1        111 5  6999996  37773

>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}

Probab=100.00  E-value=5.2e-42  Score=327.18  Aligned_cols=175  Identities=14%  Similarity=0.156  Sum_probs=152.1

Q ss_pred             CCCceEEEecCCCCcchhhhHHHH-HHHHHHHhc--cCcEEEEEecceeeecC-CCHHHHHHHHHHHHHHHHHcCcCCCc
Q 024523           76 SVKKRIVSGVQPTGSIHLGNYLGA-IKNWIALQN--SYETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNSK  151 (266)
Q Consensus        76 ~~~~~iytGi~PTG~lHLGh~ig~-i~k~~~LQ~--g~~v~ilIADlhA~~~~-~~~e~ir~~~~~~~~~~lA~GlDp~K  151 (266)
                      ++++++|+|++|||+||||||+++ +.+|  ||+  ++.++|+|+|+||++++ .+++++++++++++++|+|+|+||+|
T Consensus        80 ~~~~~vysG~~PTG~lHLGh~v~~~~~~~--lQ~~~g~~v~i~I~D~~a~~~r~~~~e~i~~~~~~~~~~~lA~GlDp~k  157 (386)
T 3hzr_A           80 KKPTFIFIQKYPQKEVALEEYITLEFARY--LQDAFNIQVIIQILDDIKVLNREATINEASKMSNDLMKYILAFGFNEDK  157 (386)
T ss_dssp             TCCEEEEEEECCCSSCBGGGHHHHHHHHH--HHHHHCCEEEEEECHHHHHHTTSCCHHHHHHHHHHHHHHHHHTCCCGGG
T ss_pred             CCCeEEEeccCCCCCccHHHHHHHHHHHH--HHHhcCCeEEEEeCchHHhhcCCCCHHHHHHHHHHHHHHHHHcCCCCcc
Confidence            568999999999999999999998 4667  898  67889999999999985 79999999999999999999999999


Q ss_pred             eEEEEcccchhhhHHHHHHhccCCHHHHhchhhHHHhhhhcC-CCCccchhhhchHHHHHhhhh--------cC-CCEEE
Q 024523          152 ASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL--------YQ-SDFVP  221 (266)
Q Consensus       152 t~if~qSd~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g-~~~i~~g~l~YPvLQAADIl~--------l~-adlvp  221 (266)
                      ++||+||+|++        ++..++.+|.|+++|+++.++++ .+++++|+|+||+|||||+++        ++ +|+||
T Consensus       158 t~i~~qS~~~~--------~~~~~~~~l~r~~t~~~~~~~~~~~~~~~~g~f~YP~LQaaD~~~~~~pdil~~~~a~~Vp  229 (386)
T 3hzr_A          158 TFIYTDYQYFG--------KMYRTISLVEKATAYNVVQPFFNFEYSDNIGKLASPSIMTASMFSQSYSHFFSSPARCLVL  229 (386)
T ss_dssp             EEEEEHHHHHH--------HHHHHHHHHHHHCBHHHHTTTSCCCSSSBHHHHHHHHHHHHTTSGGGCTTTCSSCCEEEEE
T ss_pred             eEEEeccHHHH--------HHHHHHHHHHhhccHHHHHHHhCCCCCCchhhHhhHHHHHHHHhhhcchHhhCCCCccccc
Confidence            99999999976        34456788999999999988776 578999999999999998773        45 99999


Q ss_pred             ecCcchHHHHHHHHHHHHhhhhh----------CCCcc-cccCCC-CC-ceec
Q 024523          222 VGEDQKQHLELTRELAERVNYLY----------GGRKW-KKLGGR-GG-AIFK  261 (266)
Q Consensus       222 vG~DQ~~hleLaRdiA~r~n~~y----------g~~~~-~k~g~~-~~-~if~  261 (266)
                      ||+||++|++|+||+|+|||+.-          |.+ | +||+|| .+ +||-
T Consensus       230 vG~DQ~~hl~l~Rdla~r~n~~~p~~l~~~~l~gLd-G~~KMSKSd~~~~I~L  281 (386)
T 3hzr_A          230 DSIKNVQFHSIIDQIATTLNFIQPTVLFHKMVPLLS-GVTKFDIPSDHNSILL  281 (386)
T ss_dssp             EEGGGHHHHHHHHHHHHHHTCCCCEEEEECCCCCTT-CTTCCCCCCTTTSCBT
T ss_pred             cccchHHHHHHHHHHHHHcCCCCceEeecCeeeCCC-CCCccCcCCCCCeeec
Confidence            99999999999999999999521          111 4 499999 44 7764

>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A

Probab=100.00  E-value=1e-41  Score=329.64  Aligned_cols=177  Identities=20%  Similarity=0.315  Sum_probs=152.2

Q ss_pred             CCCceEEEecCCC-CcchhhhHHHHH-HHHHHHhc--cCcEEEEEecceeeecC-CCHHHHHHHHHHHHHHHHHcCcCCC
Q 024523           76 SVKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNS  150 (266)
Q Consensus        76 ~~~~~iytGi~PT-G~lHLGh~ig~i-~k~~~LQ~--g~~v~ilIADlhA~~~~-~~~e~ir~~~~~~~~~~lA~GlDp~  150 (266)
                      ++++++|+||+|| |.||||||++++ .+|  ||+  |++++|+|||+||+++. .+++++++++++++++|+|+|+||+
T Consensus       106 ~~~~~vy~G~dPTag~LHLGh~v~~~~~~~--lQ~~~G~~~iilIgD~ta~igd~lt~e~i~~n~~~~~~~~lA~GlDp~  183 (437)
T 1r6u_A          106 KKPFYLYTGRGPSSEAMHVGHLIPFIFTKW--LQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDIN  183 (437)
T ss_dssp             TCCEEEEEEECCCSSCCBHHHHHHHHHHHH--HHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGG
T ss_pred             CCCcEEEEcccCCCCCccHHHHHHHHHHHH--HHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCcc
Confidence            4689999999999 789999999987 455  897  89999999999999985 6899999999999999999999999


Q ss_pred             ceEEEEcccchh----hhHHHHHHhccCCHHHHhchhhHHHhhhhcC-CCCccchhhhchHHHHHhhhh-----------
Q 024523          151 KASVFVQSHVRA----HVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL-----------  214 (266)
Q Consensus       151 Kt~if~qSd~~~----~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g-~~~i~~g~l~YPvLQAADIl~-----------  214 (266)
                      |++||.||+|++    +.++.|         +++||++++++.++++ .+++++|+|+||+||||||++           
T Consensus       184 kt~i~~nSd~~~~l~~~~~l~~---------~v~rm~~~~~~k~r~~~~~~~s~gef~YPlLQAaDil~l~~d~~~g~~~  254 (437)
T 1r6u_A          184 KTFIFSDLDYMGMSSGFYKNVV---------KIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRT  254 (437)
T ss_dssp             GEEEEEHHHHGGGCTTHHHHHH---------HHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCC
T ss_pred             ceEEEechhhhhhHHHHHHHHH---------HHHhhccHHHHHHHhCCCCCCchHhHHHHHHHHHHHHHhhcchhccccc
Confidence            999999999975    555554         4668888888887765 567999999999999999999           


Q ss_pred             cCCCEEEecCcchHHHHHHHHHHHHhhhh--h--------CCCcc--cccCCCCC--ceeccCC
Q 024523          215 YQSDFVPVGEDQKQHLELTRELAERVNYL--Y--------GGRKW--KKLGGRGG--AIFKVDS  264 (266)
Q Consensus       215 l~adlvpvG~DQ~~hleLaRdiA~r~n~~--y--------g~~~~--~k~g~~~~--~if~~p~  264 (266)
                      +++|+||||+||++|++++||+|+|||+.  +        |.+ |  +|||||.+  +||-.++
T Consensus       255 ~~~~lVpvG~DQ~~~i~l~Rdla~r~~~~~P~~l~~pll~gLd-G~~~KMSKS~~nsaI~L~D~  317 (437)
T 1r6u_A          255 DIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQ-GAQTKMSASDPNSSIFLTDT  317 (437)
T ss_dssp             CCEEEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECCCEETT-EEEEECCTTSSSSCCBTTCC
T ss_pred             CCceEEEeehhhHHHHHHHHHHHHHhCCCCceEeecccccCCC-CCccccCCCCCCCeeeccCC
Confidence            67899999999999999999999999931  1        111 5  79999965  5775443

>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A

Probab=100.00  E-value=3.7e-41  Score=328.80  Aligned_cols=178  Identities=20%  Similarity=0.296  Sum_probs=150.6

Q ss_pred             CCCceEEEecCCC-CcchhhhHHHHH-HHHHHHhc--cCcEEEEEecceeeec-CCCHHHHHHHHHHHHHHHHHcCcCCC
Q 024523           76 SVKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNS  150 (266)
Q Consensus        76 ~~~~~iytGi~PT-G~lHLGh~ig~i-~k~~~LQ~--g~~v~ilIADlhA~~~-~~~~e~ir~~~~~~~~~~lA~GlDp~  150 (266)
                      ++++++|+||+|| |.||||||++++ .+|  ||+  |++++|+|||+|++++ ..+++++++++++++++|+|+|+||+
T Consensus       153 ~~~~~vy~G~dPTag~LHLGh~v~~~~~~~--lQ~~~g~~~iilI~D~~a~igd~lt~e~i~~n~~~~~~~~lA~GlDp~  230 (477)
T 1r6t_A          153 KKPFYLYTGRGPSSEAMHVGHLIPFIFTKW--LQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDIN  230 (477)
T ss_dssp             TCCEEEEEEECCCTTCCBGGGHHHHHHHHH--HHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTCCCTT
T ss_pred             CCCcEEEEcccCCCCCccHHHHHHHHHHHH--HHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCCC
Confidence            4689999999999 789999999987 556  896  8999999999999998 46899999999999999999999999


Q ss_pred             ceEEEEcccchh----hhHHHHHHhccCCHHHHhchhhHHHhhhhcC-CCCccchhhhchHHHHHhhhh-----------
Q 024523          151 KASVFVQSHVRA----HVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL-----------  214 (266)
Q Consensus       151 Kt~if~qSd~~~----~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g-~~~i~~g~l~YPvLQAADIl~-----------  214 (266)
                      |++||.||+|++    +.++.|         +|+|+++++++.++++ .+++++|+|+||+||||||++           
T Consensus       231 k~~i~~nsd~~~~l~~~~~~~~---------~l~r~~t~~~~k~r~~~~~~~s~gef~YPlLQAaDil~l~~d~~~g~~~  301 (477)
T 1r6t_A          231 KTFIFSDLDYMGMSSGFYKNVV---------KIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRT  301 (477)
T ss_dssp             SEEEEEHHHHGGGCTTHHHHHH---------HHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCC
T ss_pred             ceEEEechhhhcccHHHHHHHH---------HHHhhccHHHHHHHhCCCCCCChhhhhhHHHHHHHHHHhccchhhcccc
Confidence            999999999975    666665         4557777777766654 467999999999999999999           


Q ss_pred             cCCCEEEecCcchHHHHHHHHHHHHhhhhh--CCC--c-----c--cccCCCCC--ceeccCC
Q 024523          215 YQSDFVPVGEDQKQHLELTRELAERVNYLY--GGR--K-----W--KKLGGRGG--AIFKVDS  264 (266)
Q Consensus       215 l~adlvpvG~DQ~~hleLaRdiA~r~n~~y--g~~--~-----~--~k~g~~~~--~if~~p~  264 (266)
                      +++|+||||.||++|++++||+|+|||+.-  +..  .     |  +|||||.+  +||-.++
T Consensus       302 ~~~~~VpvG~DQ~~~i~l~Rdla~r~~~~~p~~l~~pll~gLdG~~~KMSKS~~nsaI~L~d~  364 (477)
T 1r6t_A          302 DIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDT  364 (477)
T ss_dssp             CCEEEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECCCEETTEEEEECCTTSTTCCCBTTCC
T ss_pred             CCceeEeccccHHHHHHHHHHHHHHhCCCCceeeecccccCCCCCccccCCCCCCCceeecCC
Confidence            578999999999999999999999999311  100  0     5  79999965  5775443

>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-41  Score=322.28  Aligned_cols=184  Identities=20%  Similarity=0.157  Sum_probs=146.3

Q ss_pred             CCCceEEEecCCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeeec-CC-CHHHHHHHHH----HHHHHHHHcCcCC
Q 024523           76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PY-DTQQLSKATR----ETAAIYLACGIDN  149 (266)
Q Consensus        76 ~~~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~g~~v~ilIADlhA~~~-~~-~~e~ir~~~~----~~~~~~lA~GlDp  149 (266)
                      .+++++|+||+|||.||||||+++++.|..+|.|++++++|+|+||+|+ +. ..+.++.+++    .+.+.|+|+|+||
T Consensus        37 ~~p~~vy~G~~PTG~LHlG~~~~al~~~~~~q~g~~~ii~I~D~ha~t~~~~~~~e~~~~~~~~~~~~i~~~l~a~Gldp  116 (394)
T 2dlc_X           37 KRHLKLYWGTAPTGRPHCGYFVPMTKLADFLKAGCEVTVLLADLHAFLDNMKAPLEVVNYRAKYYELTIKAILRSINVPI  116 (394)
T ss_dssp             CSCCEEEEEECCCSCCBGGGHHHHHHHHHHHHTTCEEEEEECHHHHHHTTTSSCTTHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             CCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHcCCcEEEEEcCCccccCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCCh
Confidence            4577999999999999999999999888888889999999999999997 43 4556666653    3445788999999


Q ss_pred             CceEEEEcccc---hhhhHHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEecCcc
Q 024523          150 SKASVFVQSHV---RAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQ  226 (266)
Q Consensus       150 ~Kt~if~qSd~---~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ  226 (266)
                      +|+.||+||+|   ++|.++.|.++|.+|+++++|+.+  ++.+ . .+++++|+|+||+|||||++++++|+||+|.||
T Consensus       117 ~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~l~r~~~--~~~r-~-~~~~~~g~~~YP~lQaaD~l~~~~~~v~~G~DQ  192 (394)
T 2dlc_X          117 EKLKFVVGSSYQLTPDYTMDIFRLSNIVSQNDAKRAGA--DVVK-Q-VANPLLSGLIYPLMQALDEQFLDVDCQFGGVDQ  192 (394)
T ss_dssp             TTCEEEETHHHHTSHHHHHHHHHHHTTSCHHHHHHHTT--TTSC-C-CSSCCTHHHHHHHHHHHHHHHTTCSEEEEEGGG
T ss_pred             hHcEEEeCchhcchHHHHHHHHHHhCcCcHHHHhcccH--hhhc-c-cCCccceeeechhHhhccHhhhCCCEEecCccH
Confidence            99999999999   568889999999999999998764  2222 2 257899999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhhhh----------hCCCcccccCCCCC--ceeccC
Q 024523          227 KQHLELTRELAERVNYL----------YGGRKWKKLGGRGG--AIFKVD  263 (266)
Q Consensus       227 ~~hleLaRdiA~r~n~~----------yg~~~~~k~g~~~~--~if~~p  263 (266)
                      ++|++++||++++||+.          -|.+.++||+||.+  +||-..
T Consensus       193 ~~~~~l~rdl~~r~~~~~p~~l~~pll~gl~~G~KMSKS~~ns~I~L~D  241 (394)
T 2dlc_X          193 RKIFVLAEENLPSLGYKKRAHLMNPMVPGLAQGGKMSASDPNSKIDLLE  241 (394)
T ss_dssp             HHHHHHHHHHGGGGTCCCCEEEEECCCCCCC----------CCSCBTTC
T ss_pred             HHHHHHHHHHHHHcCCCCCEEEecccccCCCCCCcCCCCCCCCEEeccC
Confidence            99999999999999842          12222689999866  377443

>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0

Probab=100.00  E-value=5e-41  Score=321.25  Aligned_cols=176  Identities=19%  Similarity=0.276  Sum_probs=142.3

Q ss_pred             CCCceEEEecCCCC-cchhhhHHHHH-HHHHHHhc--cCcEEEEEecceeeec-CCCHHHHHHHHHHHHHHHHHcCcCCC
Q 024523           76 SVKKRIVSGVQPTG-SIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNS  150 (266)
Q Consensus        76 ~~~~~iytGi~PTG-~lHLGh~ig~i-~k~~~LQ~--g~~v~ilIADlhA~~~-~~~~e~ir~~~~~~~~~~lA~GlDp~  150 (266)
                      ++++++|+|++||| .||||||++++ .+|  ||+  ++.++|+|||+|++++ +.+++++++++++++++|+|+|+||+
T Consensus        76 ~~~~~vy~G~~PTg~~lHLGh~v~~~~~~~--lQ~~~~~~v~i~I~D~~~~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~  153 (395)
T 3i05_A           76 GQPFYLYTGRGPSSESMHMGHLIPFMFTKW--LQDSFRVPLVIQMTDDEKFYFRNIPMEQVEAMTTENIKDIIAMGFDPE  153 (395)
T ss_dssp             TCCEEEEEEECCCSSCCBGGGSHHHHHHHH--HHHHHTCCEEEEECHHHHHHHSCCCHHHHHHHHHHHHHHHHTTTCCTT
T ss_pred             CCCeEEEEeecCCCccchHHHHHHHHHHHH--HHHhcCCcEEEEEcchHHHhcCCCCHHHHHHHHHHHHHHHHHcCCCCC
Confidence            56899999999999 69999999985 556  998  6778999999988876 67999999999999999999999999


Q ss_pred             ceEEEEcccchhhhHHHHHHhccCCHHHHhchhhHHHhhhhcC-CCCccchhhhchHHHHH--------hhhhcC----C
Q 024523          151 KASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMAS--------DILLYQ----S  217 (266)
Q Consensus       151 Kt~if~qSd~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g-~~~i~~g~l~YPvLQAA--------DIl~l~----a  217 (266)
                      |++||.||+|.+.    |+    ..+.+|.|+.+++++.++++ .+++++|+|+||+||||        ||+.++    +
T Consensus       154 kt~i~~ns~~~~~----~~----~~v~~l~r~~t~~~~~~~~~~~~~~s~g~f~YPlLQaaD~~~~~~~DIll~~~~~~~  225 (395)
T 3i05_A          154 LTFIFRDFDYMGC----MY----RTVAKIERAFTASQVRGCFGFAMEDNCGRWMFPAIQAAPSFSAAFPHIFPPSMGNVF  225 (395)
T ss_dssp             SEEEEEHHHHTTT----SH----HHHHHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCTTTSCGGGCCCE
T ss_pred             ceEEEEcCHHHHH----HH----HHHHHHHhhCCHHHHHHhhCCCCCCchHHHHHHHHHHHhhhcccchhhhcccccCCc
Confidence            9999999999761    21    34568889999999888776 56899999999999999        566788    9


Q ss_pred             CEEEecCcchHHHHHHHHHHHHhhhh--hCCCc-------c--cccCCCCC-ceec
Q 024523          218 DFVPVGEDQKQHLELTRELAERVNYL--YGGRK-------W--KKLGGRGG-AIFK  261 (266)
Q Consensus       218 dlvpvG~DQ~~hleLaRdiA~r~n~~--yg~~~-------~--~k~g~~~~-~if~  261 (266)
                      |+||||+||++|++++||+|+|||+.  ++...       |  +||+||.+ +||-
T Consensus       226 ~lvp~G~DQ~~~i~l~Rdla~r~~~~~p~~l~~~~l~gLdG~~~KMSKS~~~~I~L  281 (395)
T 3i05_A          226 CLIPQAIDQDPYFRLTRDIAPRLGYLKPAVIHSKFFPGLSGPKGKMSSSSGTAVLL  281 (395)
T ss_dssp             EEEEEEGGGHHHHHHHHHTHHHHTCCCCEEEEECCCCCC-------------CCBT
T ss_pred             eEEEeccchHHHHHHHHHHHHHcCCCCceeeccccccCCCCCcccCCCCCCCcccC
Confidence            99999999999999999999999852  11110       5  79999977 7773

>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0

Probab=100.00  E-value=2e-40  Score=316.89  Aligned_cols=175  Identities=20%  Similarity=0.295  Sum_probs=138.2

Q ss_pred             CCCceEEEecCCC-CcchhhhHHHHH-HHHHHHhc--cCcEEEEEecceeeec--CCCHHHHHHHHHHHHHHHHHcCcCC
Q 024523           76 SVKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITL--PYDTQQLSKATRETAAIYLACGIDN  149 (266)
Q Consensus        76 ~~~~~iytGi~PT-G~lHLGh~ig~i-~k~~~LQ~--g~~v~ilIADlhA~~~--~~~~e~ir~~~~~~~~~~lA~GlDp  149 (266)
                      ++++++|+|++|| |.||||||++++ .+|  ||+  ++.++|+|||+|++++  +.+++++++++++++++|+|+|+||
T Consensus        72 g~~~~vy~G~~PTa~~lHlGh~v~~~~~~~--lQ~~~~~~v~i~I~D~~~~~~r~~~~~e~i~~~~~~~~~~~lA~GlDp  149 (393)
T 3hv0_A           72 GELFYLYTGRGPSSESLHVGHLVPFLFTKY--LQDTFKVPLVIQLTDDEKFIFKSNLTLEETHNYAYENMKDIIACGFDP  149 (393)
T ss_dssp             TCCCEEEEEECCSSSSCBSTTHHHHHHHHH--HHHHHCCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTCCCT
T ss_pred             CCCeEEEeCCCCCCCCccHHHHHHHHHHHH--HHHhcCCCeEeeccChHHHhhccCCCHHHHHHHHHHHHHHHHHcCCCC
Confidence            4589999999999 579999999998 455  999  5678999999999765  4699999999999999999999999


Q ss_pred             CceEEEEcccchhhhHHHHHHhccCCHHHHhchhhHHHhhhhcC-CCCccchhhhchHHHHHhhhh-------c-C---C
Q 024523          150 SKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL-------Y-Q---S  217 (266)
Q Consensus       150 ~Kt~if~qSd~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g-~~~i~~g~l~YPvLQAADIl~-------l-~---a  217 (266)
                      +|++||+||+|.+.  +      ..++.|+.|+.+++++.+..+ ++++++|+|+||+||||||++       + +   +
T Consensus       150 ~kt~i~~ns~~~~~--~------~~~~~~l~r~~t~~~~~~~~~~~~~~s~g~f~YPlLQaaDil~~~~p~l~~~~~di~  221 (393)
T 3hv0_A          150 ELTFIFTNLEYIAE--L------YPDILRIEKKISCSQIKSIFGFKDSCNVGKFAFPAVQAAPAFSSSFPHIFGGRTDIH  221 (393)
T ss_dssp             TTEEEEEHHHHHHH--H------HHHHHHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCSCCC
T ss_pred             cceEEEECCHHHHH--H------HHHHHHHHccCCHHHHHHhhCCCCCCchhhHhHHHHHHHHHHhhhhHHHhcccCCCc
Confidence            99999999999752  1      223457778888888877766 578999999999999999973       2 3   4


Q ss_pred             CEEEecCcchHHHHHHHHHHHHhhhh--hCCCc-------c--cccCCCCC--cee
Q 024523          218 DFVPVGEDQKQHLELTRELAERVNYL--YGGRK-------W--KKLGGRGG--AIF  260 (266)
Q Consensus       218 dlvpvG~DQ~~hleLaRdiA~r~n~~--yg~~~-------~--~k~g~~~~--~if  260 (266)
                      |+||||+||++|++++||+|+|||+.  +....       |  +||+||.+  +||
T Consensus       222 ~lvp~G~DQ~~~i~l~Rdla~r~~~~~p~~l~~~~l~gLdG~~~KMSKS~~nsaI~  277 (393)
T 3hv0_A          222 CLVPHAIDQDPYFRMVRDVAPRLGYLKPSSIHSIFLPSLQGSQTKMSASVQNSSIF  277 (393)
T ss_dssp             EEEEEEGGGHHHHHHHHHHTGGGTCCCCEEEEECCCCC-------------CCCCB
T ss_pred             eecccccchHHHHHHHHHHHHHcCCCCceeeccCcccCCCCCCcCCCCCCCCCeEe
Confidence            88999999999999999999999842  11110       5  79999875  576

>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}

Probab=100.00  E-value=4.4e-39  Score=311.98  Aligned_cols=174  Identities=24%  Similarity=0.347  Sum_probs=147.9

Q ss_pred             CCCceEEEecCCC-CcchhhhHHHHH-HHHHHHhc--cCcEEEEEecceeeecC--CCHHHHHHHHHHHHHHHHHcCcCC
Q 024523           76 SVKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITLP--YDTQQLSKATRETAAIYLACGIDN  149 (266)
Q Consensus        76 ~~~~~iytGi~PT-G~lHLGh~ig~i-~k~~~LQ~--g~~v~ilIADlhA~~~~--~~~e~ir~~~~~~~~~~lA~GlDp  149 (266)
                      ++++++|+|++|| |.||||||++++ .+|  ||+  ++.++|+|+|+|+++++  .+++++++++++++++|+|+||||
T Consensus        89 g~p~~vytG~dPTagsLHLGH~v~~~~l~~--lQ~~~g~~v~I~IgD~~a~~~r~~lt~E~I~~n~~~~~~~~lA~GlDp  166 (451)
T 3foc_A           89 GHPIYIYTGRGPSSGALHLGHLLPFIFTKY--LQDAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENIKDIIACGFDP  166 (451)
T ss_dssp             TCCEEEEEEECCCSSCCBHHHHHHHHHHHH--HHHHHTCEEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCG
T ss_pred             CCCeEEEecCCCCCCCccHHHHHHHHHHHH--HHHccCceEEEEeeCcHHhhcccCCCHHHHHHHHHHHHHHHHHcCCCC
Confidence            4689999999999 789999999988 556  998  57789999999999874  699999999999999999999999


Q ss_pred             CceEEEEcccchh---hhHHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCC---------
Q 024523          150 SKASVFVQSHVRA---HVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQS---------  217 (266)
Q Consensus       150 ~Kt~if~qSd~~~---~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~a---------  217 (266)
                      +|++||+||+|++   +.++.|.+++.+|++++.+...|        .+++++|+|+||+|||||||++..         
T Consensus       167 ekt~i~~nSd~~~~~~~~~~l~~L~r~~Tv~~m~~~~~f--------~~~is~gef~YPlLQAaDil~~~~d~~~~~~vp  238 (451)
T 3foc_A          167 DKTFIFINSQYLSLKNRYRFSCLVDRMLPISQLRASFGF--------SNDANVGYAAFPPKQMLPVYSTYFDGLPFTRVP  238 (451)
T ss_dssp             GGEEEEEHHHHTTSTTHHHHHHHHHHTCCHHHHHHHHCC--------CSSSCHHHHTCHHHHHGGGSGGGGTTSGGGCCB
T ss_pred             CceEEEeCchhhcchhHHHHHHHHHhhCCHHHHHhhccc--------CCCCchHHHhhHHHHHHHHHHhhcCCCCccccc
Confidence            9999999999965   77888888888888877766543        267999999999999999984433         


Q ss_pred             --------------------------------------------------CEEEecCcchHHHHHHHHHHHHhhhhh---
Q 024523          218 --------------------------------------------------DFVPVGEDQKQHLELTRELAERVNYLY---  244 (266)
Q Consensus       218 --------------------------------------------------dlvpvG~DQ~~hleLaRdiA~r~n~~y---  244 (266)
                                                                        |+||||+||+||+||+||+|+|||+.-   
T Consensus       239 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~VPvG~DQ~~hlel~Rdia~rfn~~~p~~  318 (451)
T 3foc_A          239 LPVGTGNEDAADAVSTKKASKKTPKKDAVLSPVHVVEELFPDSKRYQKAMCLIASGIEQDPYFRLARDLAPRMGHPKNAY  318 (451)
T ss_dssp             CC-------------------------CCCCHHHHHHHHCGGGGGBCCCEEEEEECTTTHHHHHHHHHHTTTTTSCCCEE
T ss_pred             cccccccchhhhhhhhhhccccccchhhhhhhcccchhhcccccccccccceeeeecchHHHHHHHHHHHHHhCCCCCee
Confidence                                                              299999999999999999999999521   


Q ss_pred             -------CCCcc--cccCCCCC--cee
Q 024523          245 -------GGRKW--KKLGGRGG--AIF  260 (266)
Q Consensus       245 -------g~~~~--~k~g~~~~--~if  260 (266)
                             |.+ |  +||.||.+  .||
T Consensus       319 ~~~~~l~gLd-G~~~KMSKS~~ns~I~  344 (451)
T 3foc_A          319 LLGKFLPGLQ-GSGTKMSASDPNSAIY  344 (451)
T ss_dssp             EEECCCCBTT-BTTCCCCTTCGGGSCB
T ss_pred             ecCCcccCCC-CCCCccCCCCCCCeee
Confidence                   211 3  49999875  465

>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*

Probab=99.97  E-value=5.3e-32  Score=274.09  Aligned_cols=158  Identities=12%  Similarity=0.074  Sum_probs=136.3

Q ss_pred             CCCCCceEEEecCCCCcchhhhHHHHHHHHHHHh-c--cCcEEEEEecceeeec-C--CCHHHHHHHHHHHHHHHHHcCc
Q 024523           74 SSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ-N--SYETLFFIVDLHAITL-P--YDTQQLSKATRETAAIYLACGI  147 (266)
Q Consensus        74 ~~~~~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ-~--g~~v~ilIADlhA~~~-~--~~~e~ir~~~~~~~~~~lA~Gl  147 (266)
                      ....+..++++- |||.+||||++++++.+.++| .  |++++|+||||||+++ +  .+++++++++.|++++|+|+|+
T Consensus       378 ~~~~~l~~~~~p-s~g~lHLGh~v~~~k~l~~~~~~~~g~~v~ilIaD~~A~i~d~~g~~~e~i~~~~~y~~~~~~alG~  456 (690)
T 3p0j_A          378 APAKPHACMWMP-ALLKVPLDVAEGMIKVTKDFIAAHPEGTVTLVLPDWSAVASDEITGVEKDISAALQVNCALLKAYGL  456 (690)
T ss_dssp             CCSSCEEEEECC-CCSSCBHHHHHHHHHHHHHHHHHCSSCEEEEEECTTHHHHTTCTTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCcceEEecC-CCCCcccchHHHHHHHHHHHHHHcCCCeEEEEEecchhhhCCCCCCCHHHHHHHHHHHHHHHHhcCC
Confidence            344567788888 999999999999876477654 3  7899999999999999 4  5899999999999999999999


Q ss_pred             CCCceEEEEcccchh-----hhHHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEe
Q 024523          148 DNSKASVFVQSHVRA-----HVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPV  222 (266)
Q Consensus       148 Dp~Kt~if~qSd~~~-----~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpv  222 (266)
                      || |++|++||+|..     ++.+.+.+++.+|++|+.+..         +.+++++|+|+||+||+|||+++++|++||
T Consensus       457 d~-k~~fv~~S~~~~~~~~~~~~~vi~la~~~tl~r~~~~~---------~~~~~~i~~~~YPlmQaaDi~~l~aDi~~g  526 (690)
T 3p0j_A          457 PS-SVKIVTENEVILGNCDDFWVSVIGIARKNLLSHVEELY---------GGEVRNAGQVIAALMRVATALMLSVSHVIS  526 (690)
T ss_dssp             CT-TSEEEEHHHHHHHTHHHHHHHHHHHHTTSCHHHHHHHT---------TSCCSSHHHHHHHHHHHHHHHHTTCSEEEE
T ss_pred             Cc-CeEEEECCchhccchhhHHHHHHHHHHhhhHHHHHHHh---------CCCCcchHHHHHHHHHHhhhhccCCCEEec
Confidence            97 899999999753     444444578889998877643         237889999999999999999999999999


Q ss_pred             cCcchHHHHHHHHHHHHhhh
Q 024523          223 GEDQKQHLELTRELAERVNY  242 (266)
Q Consensus       223 G~DQ~~hleLaRdiA~r~n~  242 (266)
                      |+||++|++|+||+|+++++
T Consensus       527 G~DQ~~~~~LaRd~~~~~~~  546 (690)
T 3p0j_A          527 TSLDGHINAFAREYTKERID  546 (690)
T ss_dssp             CSTTTTTTHHHHHHTTTCSE
T ss_pred             ccccHHHHHHHHHHHHhccC
Confidence            99999999999999999764

>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*

Probab=98.53  E-value=6.4e-08  Score=89.17  Aligned_cols=167  Identities=14%  Similarity=0.141  Sum_probs=96.6

Q ss_pred             cCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcccchh-
Q 024523           85 VQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA-  162 (266)
Q Consensus        85 i~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~qSd~~~-  162 (266)
                      =.|||.+||||+..++.+|...+. +...++-|.|.    ++  .....+....+.+++.++|++++.. +++||+..+ 
T Consensus        12 PsPtG~LHiG~~rtal~n~l~Ar~~~g~~ilRieDt----D~--~R~~~~~~~~I~~dL~~LGl~~D~~-~~~qSer~~~   84 (298)
T 1nzj_A           12 PSPSGELHFGSLIAALGSYLQARARQGRWLVRIEDI----DP--PREVPGAAETILRQLEHYGLHWDGD-VLWQSQRHDA   84 (298)
T ss_dssp             CCTTSCCCHHHHHHHHHHHHHHHHTTCEEEEEECCS----CG--GGSCTTHHHHHHHHHHHTTCCCSSC-CEEGGGCHHH
T ss_pred             cCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEEecC----Cc--hhhHHHHHHHHHHHHHHcCCCCCCC-CeeeeCCHHH
Confidence            357799999999999989987776 66677778873    21  1234567788899999999999864 789999644 


Q ss_pred             hhHHHH-------HHhccCCHHHHhchhh-HHHhhhh---cC---------------CCCccchhhhchH-HHHHhhhhc
Q 024523          163 HVELMW-------LLSSATPIGWLNKMIQ-FKEKSHK---AG---------------GENVGVALLTYPV-LMASDILLY  215 (266)
Q Consensus       163 ~~eL~w-------~Ls~~~tv~rL~R~~~-~ke~~~~---~g---------------~~~i~~g~l~YPv-LQAADIl~l  215 (266)
                      |.+..-       .+.|.+|-.++++... |....+.   .+               -++.-.|.+.++. .+.-|.+++
T Consensus        85 y~~~~~~L~~~G~aY~c~ct~~~l~~~~~~Y~g~cr~~~~~g~~~~~R~r~~~~~~~f~D~~~G~~~~~~~~~~~D~VL~  164 (298)
T 1nzj_A           85 YREALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGIIHADEKLAREDFIIH  164 (298)
T ss_dssp             HHHHHHHHHHTTCEEEECCCHHHHHHTTSSCCCTTTTTCCCSTTCEEEECCSSCCCEEEETTTEEEECCHHHHHSCCEEE
T ss_pred             HHHHHHHHHHcCCcccCcCCHHHHHHcCCCCCCccccCCcCCCCCcEEEecCCcccceehhhCcccccCcccCCCCEEEE
Confidence            222211       1578888888876310 0000000   00               0011234444554 355566665


Q ss_pred             CCCE-------------------EEecCcchHHHHHHHHHHHHhhhhh----------CCCcccccCCCCCce
Q 024523          216 QSDF-------------------VPVGEDQKQHLELTRELAERVNYLY----------GGRKWKKLGGRGGAI  259 (266)
Q Consensus       216 ~adl-------------------vpvG~DQ~~hleLaRdiA~r~n~~y----------g~~~~~k~g~~~~~i  259 (266)
                      ++|-                   |.-|.|+..+...-..+.+.++...          + ..++||-||.+..
T Consensus       165 R~dG~PtY~la~vvdD~~~giThvIrG~D~l~~t~~q~~l~~alG~~~p~~~H~pll~~-~~g~KLSKR~g~~  236 (298)
T 1nzj_A          165 RRDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFGWKVPDYIHLPLALN-PQGAKLSKQNHAP  236 (298)
T ss_dssp             CTTSCBCHHHHHHHHHHHTTCCEEEEEGGGHHHHHHHHHHHHHHTCCCCEEEEECBCCC--------------
T ss_pred             CCCCCEeeeeeeeeEHHhcCCCEEEeCccccccHHHHHHHHHHcCCCCCeEEEeeeeEC-CCCCcccccCCcc
Confidence            5444                   4449999988877777778776432          1 1167888887753

>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A

Probab=98.42  E-value=2.7e-07  Score=90.52  Aligned_cols=152  Identities=16%  Similarity=0.135  Sum_probs=98.2

Q ss_pred             cCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCce-------EEEE
Q 024523           85 VQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKA-------SVFV  156 (266)
Q Consensus        85 i~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt-------~if~  156 (266)
                      =.|||.|||||+..++-+|..-+. |.++++=|-|.    ++  .....+....+.+++..+|||++.-       .+|+
T Consensus        13 PsPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRieDt----D~--~R~~~~~~~~I~~~L~wlGl~wDegp~~gG~~~~~~   86 (498)
T 2ja2_A           13 PSPTGTPHVGLVRTALFNWAYARHTGGTFVFRIEDT----DA--QRDSEESYLALLDALRWLGLDWDEGPEVGGPYGPYR   86 (498)
T ss_dssp             CCSSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCC----CT--TTCCHHHHHHHHHHHHHHTCCCSBBTTTBCTTCCCB
T ss_pred             cCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcC----CC--cccChHHHHHHHHHHHHcCCCcCCCcCcCCCCCCee
Confidence            357799999999999989987776 55544447775    21  1234567778888899999999863       5899


Q ss_pred             cccchhhh-HHHH-------HHhccCCHHHHhchh---------hHH---------Hhhhhc--CC--------C--Cc-
Q 024523          157 QSHVRAHV-ELMW-------LLSSATPIGWLNKMI---------QFK---------EKSHKA--GG--------E--NV-  197 (266)
Q Consensus       157 qSd~~~~~-eL~w-------~Ls~~~tv~rL~R~~---------~~k---------e~~~~~--g~--------~--~i-  197 (266)
                      ||+..+.. +..-       .+.|.+|-.+|+++-         .|.         +..+..  |.        .  .+ 
T Consensus        87 QS~r~~~y~~~~~~L~~~g~aY~c~ct~eel~~~r~~~~~~~~~~Y~~~cr~l~~~e~~~~~~~g~~~~iR~k~~~~~~~  166 (498)
T 2ja2_A           87 QSQRAEIYRDVLARLLAAGEAYHAFSTPEEVEARHVAAGRNPKLGYDNFDRHLTDAQRAAYLAEGRQPVVRLRMPDDDLA  166 (498)
T ss_dssp             GGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHTTCCTTSCCCCGGGGCCHHHHHHHHHTTCCCEEEECCCSSCEE
T ss_pred             eecCHHHHHHHHHHHHHcCCeEEeCCCHHHHHHHHHHHhcCCCCCCCCccccCCHHHHHhhhccCCCceEEEECCCCceE
Confidence            99975532 2111       158899988886542         111         100000  10        0  00 


Q ss_pred             ----cchhhhchHHHHHhhhhcC-------------------CCEEEecCcchHHHHHHHHHHHHhhh
Q 024523          198 ----GVALLTYPVLMASDILLYQ-------------------SDFVPVGEDQKQHLELTRELAERVNY  242 (266)
Q Consensus       198 ----~~g~l~YPvLQAADIl~l~-------------------adlvpvG~DQ~~hleLaRdiA~r~n~  242 (266)
                          -.|.+.|+.-+.-|.+.++                   .++|.-|.|+..+...-+.+.+.++.
T Consensus       167 ~~D~v~G~i~~~~~~~~D~Vi~R~Dg~ptY~lA~vVDD~~mgithviRG~D~~~~t~~q~~l~~aL~~  234 (498)
T 2ja2_A          167 WNDLVRGPVTFAAGSVPDFALTRASGDPLYTLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQALIR  234 (498)
T ss_dssp             EEETTTEEEEECTTCSCCCBSBCTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHHH
T ss_pred             EEecccceEeecccccCcceeEccCCCcchhhHHHHHhhhcCCCEEEEChhhhhccHHHHHHHHHHHh
Confidence                1244566655556666554                   45555599999999999999999954

>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A

Probab=98.18  E-value=5.6e-07  Score=87.65  Aligned_cols=167  Identities=17%  Similarity=0.112  Sum_probs=108.4

Q ss_pred             CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceE-------EEEc
Q 024523           86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKAS-------VFVQ  157 (266)
Q Consensus        86 ~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~-------if~q  157 (266)
                      .|||.|||||+..++-+|..-+. |..+++=|-|.    ++  .....+....+.+++..+|++++...       .|+|
T Consensus         9 sPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDt----D~--~R~~~~~~~~I~~dl~wlGl~wd~~~~~gG~~gp~~Q   82 (468)
T 1j09_A            9 SPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDT----DR--ARYVPGAEERILAALKWLGLSYDEGPDVGGPHGPYRQ   82 (468)
T ss_dssp             CCSSSCBHHHHHHHHHHHHHHHHTTCEEEECBCCC----CT--TSCCTTHHHHHHHHHHHTTCCCSBBTTTBCTTCCCBG
T ss_pred             CCCCCccHHHHHHHHHHHHHHHHcCCEEEEEeCcC----CC--cccChHHHHHHHHHHHHcCCCCCCCCCCCCCCCCeec
Confidence            57899999999999988876666 66666667665    21  12244567788889999999998653       5899


Q ss_pred             ccchh-hhHHHH-------HHhccCCHHHHhchh-------------hHHHhhhhc--CC---------C--Cc-----c
Q 024523          158 SHVRA-HVELMW-------LLSSATPIGWLNKMI-------------QFKEKSHKA--GG---------E--NV-----G  198 (266)
Q Consensus       158 Sd~~~-~~eL~w-------~Ls~~~tv~rL~R~~-------------~~ke~~~~~--g~---------~--~i-----~  198 (266)
                      |+..+ |.+..-       .+.|.+|-.+++++-             +..+..+..  |.         .  .+     -
T Consensus        83 S~r~~~y~~~~~~L~~~G~aY~c~ct~~el~~~r~~~~~y~~~cr~l~~~e~~~~~~~g~~~~~R~k~~~~~~~~~~D~~  162 (468)
T 1j09_A           83 SERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKGGYDGRARNIPPEEAEERARRGEPHVIRLKVPRPGTTEVKDEL  162 (468)
T ss_dssp             GGCHHHHHHHHHHHHHHTSEEEECCCHHHHHHHHHHHSSCCCGGGGSCHHHHHHHHHTTCCCEEEECCCSSCEEEEEETT
T ss_pred             cCCHHHHHHHHHHHHHcCCeEEcCCCHHHHHHHHHHcCCCCCcccCCCHHHHHHHHhcCCCceEEEecCCCCceEEEecc
Confidence            99654 222221       147888888876531             222211110  10         0  11     1


Q ss_pred             chhhhchHHHHHhhhhcCCCEEEe-------------------cCcchHHHHHHHHHHHHhhhhh---CC------Cccc
Q 024523          199 VALLTYPVLMASDILLYQSDFVPV-------------------GEDQKQHLELTRELAERVNYLY---GG------RKWK  250 (266)
Q Consensus       199 ~g~l~YPvLQAADIl~l~adlvpv-------------------G~DQ~~hleLaRdiA~r~n~~y---g~------~~~~  250 (266)
                      -|.+.+|..+.-|.+.+++|..|.                   |.|+..+...-.-+.+.++...   +.      ..++
T Consensus       163 ~G~~~~~~~~~~D~Vl~R~dg~PtY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg~~~p~~~h~~li~~~~g~  242 (468)
T 1j09_A          163 RGVVVYDNQEIPDVVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRFYHMPLLRNPDKT  242 (468)
T ss_dssp             TEEEEEEGGGSCCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEECCCBCTTSC
T ss_pred             ceeEeecccCCCCeEEEecCCCeeehhHHHHHHHHCCCCeEEEChhhhhhHHHHHHHHHHcCCCCCeEEEeeeeeCCCCC
Confidence            345777777777877766555555                   9999999999999999987532   11      1157


Q ss_pred             ccCCCCCc
Q 024523          251 KLGGRGGA  258 (266)
Q Consensus       251 k~g~~~~~  258 (266)
                      ||-||.+.
T Consensus       243 klSKR~g~  250 (468)
T 1j09_A          243 KISKRKSH  250 (468)
T ss_dssp             BCCTTTSC
T ss_pred             ccccccch
Confidence            88887763

>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*

Probab=98.12  E-value=6.4e-07  Score=87.67  Aligned_cols=174  Identities=17%  Similarity=0.147  Sum_probs=105.3

Q ss_pred             ceEEEecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceE----
Q 024523           79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKAS----  153 (266)
Q Consensus        79 ~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~----  153 (266)
                      .+.=..=.|||.|||||+..++.+|..-+. |.++++-|-|.    ++  .....+....+.+++..+|++++..-    
T Consensus        26 v~~RFAPsPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDt----D~--~R~~~~~~~~I~~dL~wlGl~wDe~~~~gG   99 (488)
T 3afh_A           26 VRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDT----DT--ERSSREYEQQILESLRWCGLDWDEGPDIGG   99 (488)
T ss_dssp             CEEEECCCCSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCC----CT--TTCCHHHHHHHHHHHHHTTCCCSBBTTTBC
T ss_pred             ceEEECCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEEeeC----Cc--ccccHHHHHHHHHHHHHcCCCCCcCCCCCC
Confidence            344455567899999999999989977666 66777767775    21  12345677788889999999998643    


Q ss_pred             ---EEEcccchh-hhHHHHH-------HhccCCHHHHhch--hhHHH---hhhh-------cC-C-CC-----ccchhhh
Q 024523          154 ---VFVQSHVRA-HVELMWL-------LSSATPIGWLNKM--IQFKE---KSHK-------AG-G-EN-----VGVALLT  203 (266)
Q Consensus       154 ---if~qSd~~~-~~eL~w~-------Ls~~~tv~rL~R~--~~~ke---~~~~-------~g-~-~~-----i~~g~l~  203 (266)
                         .|+||+..+ |.+..-.       +.|.+|-.+|++.  ..|..   ..+.       +. + ..     .-.|.+.
T Consensus       100 ~~gp~~QSer~~~y~~~~~~L~~~G~aY~c~ct~eel~~~~~~~Y~~~~~~~~~G~~~~iR~k~~~~~~~~~D~v~G~~~  179 (488)
T 3afh_A          100 DFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYME  179 (488)
T ss_dssp             TTCCCBGGGCHHHHHHHHHHHHHTTSEEEEEECSSSTTSEEEEESSCCHHHHHTTCCEEEEECCCSSEEEEEETTTEEEE
T ss_pred             CCCCeeeeCCHHHHHHHHHHHHHcCCeEecCCCHHHHHhhcCCCCCchhhHHhcCCCceEEEECCCCceeEEeccceeEe
Confidence               689999654 2222111       3566666655542  00100   0000       00 0 00     0123333


Q ss_pred             chHHHHHhhhh-------------------cCCCEEEecCcchHHHHHHHHHHHHhhhh---hCC------CcccccCCC
Q 024523          204 YPVLMASDILL-------------------YQSDFVPVGEDQKQHLELTRELAERVNYL---YGG------RKWKKLGGR  255 (266)
Q Consensus       204 YPvLQAADIl~-------------------l~adlvpvG~DQ~~hleLaRdiA~r~n~~---yg~------~~~~k~g~~  255 (266)
                      ++.-+.-|.+.                   .+.++|.-|.|+..+...-..+.+.|+..   |+.      ..++||-||
T Consensus       180 ~~~~~~~D~Vl~R~DG~PtY~lA~vVDD~~mgIThViRG~D~l~~tp~q~~l~~aLG~~~P~f~H~pli~~~~g~KLSKR  259 (488)
T 3afh_A          180 FDNSTLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHIPLILGSDRTPLSKR  259 (488)
T ss_dssp             EEGGGSCCEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEECCEECTTSSBCCTT
T ss_pred             ecCCCCCCeEEEecCCCeehhhHHHHHHHhcCCCEEEEchhhhhCHHHHHHHHHHcCCCCCeEEEEeeeeCCCCCcccCc
Confidence            33333333333                   35677777999999999999999998753   221      116788888


Q ss_pred             CCc
Q 024523          256 GGA  258 (266)
Q Consensus       256 ~~~  258 (266)
                      .+.
T Consensus       260 ~g~  262 (488)
T 3afh_A          260 HGA  262 (488)
T ss_dssp             TSC
T ss_pred             CCc
Confidence            774

>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}

Probab=97.93  E-value=3.5e-05  Score=75.45  Aligned_cols=168  Identities=16%  Similarity=0.153  Sum_probs=102.9

Q ss_pred             ecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcccchh
Q 024523           84 GVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA  162 (266)
Q Consensus        84 Gi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~qSd~~~  162 (266)
                      .=.|||.+||||+..++-+|..-+. +.++++=|-|.=    +  .....+.+..+.+++..+|++++. ..|+||+..+
T Consensus         7 APSPtG~lHiG~artal~n~l~Ar~~~G~filRieDtD----~--~R~~~~~~~~i~~dL~wLGl~wde-~~~~QS~r~~   79 (492)
T 2cfo_A            7 APSPTGNLHIGTARTAVFNWLYARHRGGKFILRIEDTD----R--ERSRPEYTENILEGLQWLGLTWDE-GPYFQSDRLD   79 (492)
T ss_dssp             CCCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCS----S--SSCCHHHHHHHHHHHHHTTCCCSE-EEEEGGGCHH
T ss_pred             CCCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEEeeCC----c--cccchHHHHHHHHHHHHcCCCCCC-CCccccCCHH
Confidence            3357899999999999888876665 666777777762    1  112456778888899999999885 4799999643


Q ss_pred             -hhHHHHH-------HhccCCHHHHhchh----------hHH---------Hhhh----------hcC-CCC--c-----
Q 024523          163 -HVELMWL-------LSSATPIGWLNKMI----------QFK---------EKSH----------KAG-GEN--V-----  197 (266)
Q Consensus       163 -~~eL~w~-------Ls~~~tv~rL~R~~----------~~k---------e~~~----------~~g-~~~--i-----  197 (266)
                       |.+..-.       +.|.++-.+|+.+-          .|.         +...          ++. ++.  +     
T Consensus        80 ~y~~~~~~Li~~G~AY~c~ct~~el~~~r~~~~~~g~~~~y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~  159 (492)
T 2cfo_A           80 LYRQAIQTLLDKGLAYYCYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQAAFEAAGRTPVIRFKIEDDRQIEWQDL  159 (492)
T ss_dssp             HHHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHHHHHHTTCCCEEEECCCTTCEEEEEET
T ss_pred             HHHHHHHHHHHCCCceEecCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHhCCCCceEEEEcCCCCceEEEec
Confidence             3332222       35777776665421          010         0000          011 000  0     


Q ss_pred             cchhhhchHHH-------------------------HHhhhhcCCCEEEecCcchHHHHHHHHHHHHhhhh---hCC---
Q 024523          198 GVALLTYPVLM-------------------------ASDILLYQSDFVPVGEDQKQHLELTRELAERVNYL---YGG---  246 (266)
Q Consensus       198 ~~g~l~YPvLQ-------------------------AADIl~l~adlvpvG~DQ~~hleLaRdiA~r~n~~---yg~---  246 (266)
                      --|.+.++.-+                         +.|....+.|+|..|.|+..+-..-..+.+.+|..   |..   
T Consensus       160 v~G~~~~~~~~~~~D~Vl~R~d~~p~~G~PtY~la~vvDD~~~gIthviRG~D~~~~t~~q~~l~~alg~~~P~~~H~pl  239 (492)
T 2cfo_A          160 VRGRVSWQGADLGGDMVIARAAPRGEIGYPLYNLVVVVDDIAMGITDVIRGEDHIGNTPKQILLYEALGATPPNFAHTPL  239 (492)
T ss_dssp             TTEEEEEEGGGGCSSEEEECSCCTTSCCCBCHHHHHHHHHHHTTCSEEEEEGGGTTHHHHHHHHHHHTTCCCCEEEEECC
T ss_pred             ceeeeeecccccCCCeEEEEecCCCCCCceeehhhhhhhhhcCCCCeEEEchhhhhCHHHHHHHHHHcCCCCceEEEeee
Confidence            01223333333                         33333445667889999999999998888988753   211   


Q ss_pred             ---CcccccCCCCCc
Q 024523          247 ---RKWKKLGGRGGA  258 (266)
Q Consensus       247 ---~~~~k~g~~~~~  258 (266)
                         .-++||-||.+.
T Consensus       240 il~~~g~KLSKr~g~  254 (492)
T 2cfo_A          240 ILNSTGQKLSKRDGV  254 (492)
T ss_dssp             EECSSSSBCCTTSSC
T ss_pred             EECCCCCEecccCCc
Confidence               016888888874

>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}

Probab=97.92  E-value=6.9e-07  Score=89.31  Aligned_cols=175  Identities=18%  Similarity=0.161  Sum_probs=104.1

Q ss_pred             CceEEEecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCce----
Q 024523           78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKA----  152 (266)
Q Consensus        78 ~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt----  152 (266)
                      +.++=..=.|||.|||||+.+++-+|..-+. +.++++-|.|.    ++.  ....+....+.+++..+|++++..    
T Consensus       129 ~v~~RFaPsPTG~LHiG~artAl~n~l~Ar~~~G~~ilRieDt----D~~--r~~~~~~~~I~~dL~wlGl~~D~~~~~g  202 (592)
T 3al0_C          129 LVRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDT----DTE--RSSREYEQQILESLRWCGLDWDEGPDIG  202 (592)
T ss_dssp             CCEEEECCCSSSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCC----CSS--SCCHHHHHHHHHHHHHTTCCCSBBTTTB
T ss_pred             eEEEEECCCCCCCccHHHHHHHHHHHHHHHhcCCcEEEEecCc----Chh--hccHHHHHHHHHHHHHcCCCCCCCCCcC
Confidence            3445455678899999999999988876665 67777778773    321  234556777888899999999864    


Q ss_pred             ---EEEEcccchh-hhHHHHH-------HhccCCHHHHhch--hhHH---Hhhh-------hcC-C------CCccchhh
Q 024523          153 ---SVFVQSHVRA-HVELMWL-------LSSATPIGWLNKM--IQFK---EKSH-------KAG-G------ENVGVALL  202 (266)
Q Consensus       153 ---~if~qSd~~~-~~eL~w~-------Ls~~~tv~rL~R~--~~~k---e~~~-------~~g-~------~~i~~g~l  202 (266)
                         -.|+||+..+ |.+..-.       +.|.+|-.+|++.  ..|.   +..+       ++. +      .+.-.|.+
T Consensus       203 G~~gp~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~el~~~~~~~Y~~~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~~  282 (592)
T 3al0_C          203 GDFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYM  282 (592)
T ss_dssp             CTTCCCBSTTCHHHHHHHHHHHHHTTTEEEEEEETTEEEEECCCCSSCCHHHHHTTCCEEEEECCCSSCCEECCTTTCSE
T ss_pred             CCCCCeeeeCCHHHHHHHHHHHHHcCCceEecCCHHHHHhhcCCCCCcHHHHhhcCCCceEEEECCCCCceeeeccccee
Confidence               3689999654 2222111       3555555444431  0000   0000       000 0      00112333


Q ss_pred             hchHHHHHhhhh-------------------cCCCEEEecCcchHHHHHHHHHHHHhhhh---hCC------CcccccCC
Q 024523          203 TYPVLMASDILL-------------------YQSDFVPVGEDQKQHLELTRELAERVNYL---YGG------RKWKKLGG  254 (266)
Q Consensus       203 ~YPvLQAADIl~-------------------l~adlvpvG~DQ~~hleLaRdiA~r~n~~---yg~------~~~~k~g~  254 (266)
                      .++.-+.-|.+.                   .+.++|.-|.|+..+...-+.+.+.|+..   |+.      ..++||-|
T Consensus       283 ~~~~~~~~D~Vl~R~dg~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg~~~P~~~hlpli~~~~g~KLSK  362 (592)
T 3al0_C          283 EFDNSTLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHIPLILGSDRTPLSK  362 (592)
T ss_dssp             ECCSSSSCCEEEECTTSCCCHHHHHHHHHHHTTCSBCCEEGGGGGGHHHHHHHHTTTTCCCCBCCEECCCBCTTSSBCCT
T ss_pred             eeccccCCCeEEEcCCCCeehhhHHHHHHHhcCCCeEEEchhhHhCHHHHHHHHHHhCCCCCeEEEeeeeeCCCCCcccc
Confidence            333333333333                   35666677999999999999999888753   221      01678888


Q ss_pred             CCCc
Q 024523          255 RGGA  258 (266)
Q Consensus       255 ~~~~  258 (266)
                      |.+.
T Consensus       363 R~g~  366 (592)
T 3al0_C          363 RHGA  366 (592)
T ss_dssp             TTCS
T ss_pred             cCCc
Confidence            8774

>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}

Probab=96.83  E-value=0.0036  Score=61.31  Aligned_cols=97  Identities=20%  Similarity=0.153  Sum_probs=59.3

Q ss_pred             CceEEEecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEE
Q 024523           78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFV  156 (266)
Q Consensus        78 ~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~  156 (266)
                      +.+.=..=.|||.+||||+..++-+|..-+. +.+.++=|-| +   ++  .....+....+.+++..+|++++. ..|+
T Consensus        25 ~v~~RFAPSPTG~lHiG~~rtal~n~l~Ar~~~G~filRieD-t---D~--~R~~~~~~~~i~~dl~wlGl~~d~-~~~~   97 (490)
T 4g6z_A           25 PVRTRFAPSPTGFIHLGNIRSALYPWAFARKMKGTFVLRIED-T---DV--ERSSQEAVDAILEGMAWLGLDYDE-GPYY   97 (490)
T ss_dssp             CCEEEECCCCCSCCBHHHHHHHHHHHHHHHHTTCEEEEEECC-C---CG--GGCCHHHHHHHHHHHHHTTCCCSE-EEEE
T ss_pred             CceEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEeCC-C---Cc--ccccHHHHHHHHHHHHHcCCCCCC-CCcc
Confidence            3455555567799999999999888876555 4455554554 2   21  123456778888899999999985 4789


Q ss_pred             cccchh-hhHHHHH-------HhccCCHHHHhc
Q 024523          157 QSHVRA-HVELMWL-------LSSATPIGWLNK  181 (266)
Q Consensus       157 qSd~~~-~~eL~w~-------Ls~~~tv~rL~R  181 (266)
                      ||+..+ |.+..-.       +-|.+|-.+|+.
T Consensus        98 qS~r~~~y~~~~~~Li~~G~aY~C~ct~eel~~  130 (490)
T 4g6z_A           98 QMQRMDRYREVLAQMQEKGLVYPCYMSTEELDA  130 (490)
T ss_dssp             GGGCHHHHHHHHHHHHHTTSEEEECC-------
T ss_pred             cccCHHHHHHHHHHHHHCCCEEeCCCCHHHHHH
Confidence            999533 3332221       467777776654

>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=96.36  E-value=0.0048  Score=61.26  Aligned_cols=166  Identities=19%  Similarity=0.156  Sum_probs=85.7

Q ss_pred             ecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcccchh
Q 024523           84 GVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA  162 (266)
Q Consensus        84 Gi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~qSd~~~  162 (266)
                      .=.|||.+||||...++-+|..-+. +..+++=|-|.    ++  .....+.+..+.+++..+|++++  ++++||+..+
T Consensus       102 aPsPtG~LHIGhaRtal~n~l~Ar~~~G~~iLRieDt----D~--~R~~~e~~~~I~edL~wLGl~wd--~~~~qSdr~~  173 (553)
T 3aii_A          102 APNPSGPLHIGHARAAILNHEYARKYDGRLILRIEDT----DP--RRVDPEAYDMIPADLEWLGVEWD--ETVIQSDRME  173 (553)
T ss_dssp             CCCSSSSCBHHHHHHHHHHHHHHHHTTCEEEEEECCC----CG--GGCCTTHHHHHHHHHHHHTCCCS--EEEEGGGGHH
T ss_pred             CCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcC----Cc--ccccHHHHHHHHHHHHHcCCCCC--CCcccccCHH
Confidence            3355699999999988867754443 44555556554    21  12234567788889999999997  6899999643


Q ss_pred             -hhHHHHH-------HhccCCHHHHhch-----------hhH-------HHhhhh--------cC-C---CCccc-----
Q 024523          163 -HVELMWL-------LSSATPIGWLNKM-----------IQF-------KEKSHK--------AG-G---ENVGV-----  199 (266)
Q Consensus       163 -~~eL~w~-------Ls~~~tv~rL~R~-----------~~~-------ke~~~~--------~g-~---~~i~~-----  199 (266)
                       +.+..-.       +-|.++-.++...           .+-       .++..-        +. +   .+.++     
T Consensus       174 ~y~~~~~~Li~~G~AY~c~cs~eei~~~r~~g~~~~cR~~s~ee~l~~f~~m~~G~~g~~~lR~k~d~~~~n~~~~Dfvl  253 (553)
T 3aii_A          174 TYYEYTEKLIERGGAYVCTCRPEEFRELKNRGEACHCRSLGFRENLQRWREMFEMKEGSAVVRVKTDLNHPNPAIRDWVS  253 (553)
T ss_dssp             HHHHHHHHHHHTTSEEEECSCHHHHHHHHHTTCCCGGGGCCHHHHHHHHHHGGGSCTTSCEEEECCCTTCSSGGGTTCEE
T ss_pred             HHHHHHHHHHHcCCceeCCCCHHHHHHHhhcCCCCccccCCHHHHHHHHHHHhcCCcCceEEEEEcccccCCCCCCCcEE
Confidence             3332222       3456665555321           011       111110        00 0   00010     


Q ss_pred             -----------hh--hhchHHHH---HhhhhcCCCEEEecCcchHHHHHHHHHHHHhhhhh------CC--CcccccCCC
Q 024523          200 -----------AL--LTYPVLMA---SDILLYQSDFVPVGEDQKQHLELTRELAERVNYLY------GG--RKWKKLGGR  255 (266)
Q Consensus       200 -----------g~--l~YPvLQA---ADIl~l~adlvpvG~DQ~~hleLaRdiA~r~n~~y------g~--~~~~k~g~~  255 (266)
                                 |-  ..||..+=   .|.-..+.+++..|.|...+-..-.-+...++..+      +.  ..++||-||
T Consensus       254 ~R~~~~~hp~~Gd~~~g~PtYhfa~~vDD~~~GIThviRG~D~~~nt~~Q~~l~~alG~~~P~y~H~~~L~~~g~KLSKR  333 (553)
T 3aii_A          254 MRIVEAEHPRTGTRYRVYPMMNFSVAVDDHLLGVTHVLRGKDHLANREKQEYLYRHLGWEPPEFIHYGRLKMDDVALSTS  333 (553)
T ss_dssp             EEECCSCBTTTBTSCCEEECHHHHHHHHHHHTTCCEEEC-----CHHHHHHHHHHHHTCCCCEEECCCCBC-------CH
T ss_pred             EEecCCCCCccCCCceeeeeeeeeeeeeeccCCCceEeccHhhhhCHHHHHHHHHHcCCCCCeEEEeeEEecCCceechh
Confidence                       11  13555543   34445689999999999988777776677776421      10  015677776


Q ss_pred             CC
Q 024523          256 GG  257 (266)
Q Consensus       256 ~~  257 (266)
                      .+
T Consensus       334 ~~  335 (553)
T 3aii_A          334 GA  335 (553)
T ss_dssp             HH
T ss_pred             hh
Confidence            54

>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*

Probab=96.29  E-value=0.011  Score=57.37  Aligned_cols=78  Identities=5%  Similarity=-0.050  Sum_probs=51.6

Q ss_pred             CCCCCceEEEe-cCCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEecce-e--eecC-----CCH-HHHHHHHHHHH
Q 024523           74 SSSVKKRIVSG-VQPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIVDLH-A--ITLP-----YDT-QQLSKATRETA  139 (266)
Q Consensus        74 ~~~~~~~iytG-i~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~ilIADlh-A--~~~~-----~~~-e~ir~~~~~~~  139 (266)
                      +..++++|-|. --++|.+||||..+.+  .-+.+++.  |++|.+.-+.+| .  +...     .++ +-+.+++..+.
T Consensus         6 ~~~k~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~~~   85 (542)
T 3u1f_A            6 KVEKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEFK   85 (542)
T ss_dssp             -CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             CCCCCEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            33455666555 4688999999988755  22444444  899877665555 3  2221     244 44567778888


Q ss_pred             HHHHHcCcCCCc
Q 024523          140 AIYLACGIDNSK  151 (266)
Q Consensus       140 ~~~lA~GlDp~K  151 (266)
                      +++.++|++.|.
T Consensus        86 ~~~~~lgi~~D~   97 (542)
T 3u1f_A           86 KCFEQMDYSIDY   97 (542)
T ss_dssp             HHHHHHTCCCSE
T ss_pred             HHHHHhCCccCc
Confidence            999999998874

>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A

Probab=95.84  E-value=0.013  Score=58.22  Aligned_cols=94  Identities=13%  Similarity=-0.020  Sum_probs=60.0

Q ss_pred             ceEEEecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEc
Q 024523           79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ  157 (266)
Q Consensus        79 ~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~q  157 (266)
                      .+.=.+=.|||.+||||.-.++-+|..-+. +..+++=|-|.    ++  .....+....+.+++..+|++++- ..++|
T Consensus        27 v~tRFaPSPtG~LHIGhaRtal~n~l~Ar~~gG~fiLRieDT----D~--~R~~~e~~~~I~edL~wLGl~wde-~~~~q   99 (553)
T 1qtq_A           27 VHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDT----NP--VKEDIEYVESIKNDVEWLGFHWSG-NVRYS   99 (553)
T ss_dssp             CEEEECCCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCC----CG--GGCCHHHHHHHHHHHHHTTCCCSS-SCEEG
T ss_pred             eEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCC----Cc--hhcCHHHHHHHHHHHHHcCCCCCC-CCeeh
Confidence            444556677899999999888867754444 44555556554    21  123456677888899999999853 47899


Q ss_pred             ccchh-hhHHHHH-------HhccCCHHHH
Q 024523          158 SHVRA-HVELMWL-------LSSATPIGWL  179 (266)
Q Consensus       158 Sd~~~-~~eL~w~-------Ls~~~tv~rL  179 (266)
                      |+..+ +.+.+-.       +-|.++-.++
T Consensus       100 Ser~~~~~~~a~~Li~~G~AY~c~ct~eel  129 (553)
T 1qtq_A          100 SDYFDQLHAYAIELINKGLAYVDELTPEQI  129 (553)
T ss_dssp             GGGHHHHHHHHHHHHHTTSEEEECCCHHHH
T ss_pred             cccHHHHHHHHHHHHHCCCceecCCCHHHH
Confidence            99643 3333222       3466665544

>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A

Probab=95.62  E-value=0.047  Score=53.40  Aligned_cols=81  Identities=22%  Similarity=0.343  Sum_probs=50.1

Q ss_pred             CCceEEEe-cCCCCcchhhhHHHHH--HHHHHHhc--cCcEEEE-Eecceeeec-------CCCHHH-HHHHHHHHHHHH
Q 024523           77 VKKRIVSG-VQPTGSIHLGNYLGAI--KNWIALQN--SYETLFF-IVDLHAITL-------PYDTQQ-LSKATRETAAIY  142 (266)
Q Consensus        77 ~~~~iytG-i~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~il-IADlhA~~~-------~~~~e~-ir~~~~~~~~~~  142 (266)
                      ++++|.++ .-|||.+||||....+  .-+.++++  |++|.+. -.|.|..-.       ..++++ +.+....+.+++
T Consensus        18 ~~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~   97 (560)
T 3h99_A           18 KKILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDF   97 (560)
T ss_dssp             CEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred             CcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence            34555555 4556999999988765  22444444  8998655 445554321       124433 455567788899


Q ss_pred             HHcCcCCCceEEEEccc
Q 024523          143 LACGIDNSKASVFVQSH  159 (266)
Q Consensus       143 lA~GlDp~Kt~if~qSd  159 (266)
                      .++|++.+.  ++.-++
T Consensus        98 ~~lgi~~d~--~~~t~~  112 (560)
T 3h99_A           98 AGFNISYDN--YHSTHS  112 (560)
T ss_dssp             HHTTCCCSE--EEESSS
T ss_pred             HHcCCCCCC--ceeCCC
Confidence            999999873  444443

>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}

Probab=95.47  E-value=0.013  Score=57.04  Aligned_cols=77  Identities=17%  Similarity=0.142  Sum_probs=51.6

Q ss_pred             ceEEEecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCce-----
Q 024523           79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKA-----  152 (266)
Q Consensus        79 ~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt-----  152 (266)
                      .+....=.|||.|||||.-+++-+|..-+. +...++=|-|.-    +  ...+.+....+.+++..+|++++..     
T Consensus        14 v~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~~~G~~iLRieDtD----~--~r~~~~~~~~I~~~l~wlGl~~de~p~~gg   87 (481)
T 2o5r_A           14 VRVRFAPSPTGFLHVGGARTALFNFLFARKEKGKFILRIEDTD----L--ERSEREYEEKLMESLRWLGLLWDEGPDVGG   87 (481)
T ss_dssp             CEEEECCCCCSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCSS----C--CSGGGHHHHHHHHHHHHHTCCCSBBTTTBC
T ss_pred             EEEEECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCC----c--cccHHHHHHHHHHHHHHcCCCCCCCcccCC
Confidence            456777789999999999988877754333 445544454432    1  1123456667788888999998752     


Q ss_pred             --EEEEcccch
Q 024523          153 --SVFVQSHVR  161 (266)
Q Consensus       153 --~if~qSd~~  161 (266)
                        -.|+||+..
T Consensus        88 ~~g~y~QS~r~   98 (481)
T 2o5r_A           88 DHGPYRQSERV   98 (481)
T ss_dssp             TTCCCBGGGGH
T ss_pred             CCCceeeeccH
Confidence              257799843

>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}

Probab=95.42  E-value=0.08  Score=52.01  Aligned_cols=88  Identities=10%  Similarity=0.037  Sum_probs=52.2

Q ss_pred             CCCCCCCCCceEEEe-cCCCCcchhhhHHHHH--HHHHHHhc--cCcEEE-EEecceeeec-------CCCHH-HHHHHH
Q 024523           70 PVASSSSVKKRIVSG-VQPTGSIHLGNYLGAI--KNWIALQN--SYETLF-FIVDLHAITL-------PYDTQ-QLSKAT  135 (266)
Q Consensus        70 ~~~~~~~~~~~iytG-i~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~i-lIADlhA~~~-------~~~~e-~ir~~~  135 (266)
                      +..++..++++|-+. .-|+|++||||..+++  .-+.++++  |++|.+ .-.|.|..-.       ..+++ -+.++.
T Consensus        19 ~~~~~~~~~~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~~~~~~   98 (564)
T 3kfl_A           19 PGSMKKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSVS   98 (564)
T ss_dssp             -----CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             CccccCCCCEEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHH
Confidence            344444445444333 3588999999987765  33556655  899855 4556664321       02443 345566


Q ss_pred             HHHHHHHHHcCcCCCceEEEEccc
Q 024523          136 RETAAIYLACGIDNSKASVFVQSH  159 (266)
Q Consensus       136 ~~~~~~~lA~GlDp~Kt~if~qSd  159 (266)
                      ..+.+++..+|++.+.  ++.-++
T Consensus        99 ~~~~~~~~~lgi~~D~--~~~t~~  120 (564)
T 3kfl_A           99 SEFKQCFQEMNYDMNY--FIRTTN  120 (564)
T ss_dssp             HHHHHHHHHTTCCCSE--EEETTS
T ss_pred             HHHHHHHHHcCCCCCc--cccCCC
Confidence            7788889999998873  445543

>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}

Probab=95.30  E-value=0.015  Score=56.97  Aligned_cols=96  Identities=21%  Similarity=0.173  Sum_probs=56.7

Q ss_pred             eEEEecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCce------
Q 024523           80 RIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKA------  152 (266)
Q Consensus        80 ~iytGi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt------  152 (266)
                      +.=.-=.|||.|||||...++-+|..-+. |.++++=|=| +   ++.  ....+....+.+++.-+||++|.-      
T Consensus        26 rtRFAPsPtG~LHiG~artAl~n~~~Ar~~~G~fiLRieD-t---D~~--R~~~~~~~~I~~~L~wlGl~wDe~p~~~g~   99 (512)
T 4gri_A           26 RVRYAPSPTGLQHIGGIRTALFNYFFAKSCGGKFLLRIED-T---DQS--RYSPEAENDLYSSLKWLGISFDEGPVVGGD   99 (512)
T ss_dssp             EEEECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEECBCC-C---CTT--SCCHHHHHHHHHHHHHHTCCCSBBTTTBCT
T ss_pred             eEEeCcCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCc-C---CCC--cCCHHHHHHHHHHHHHcCCCCCcCCccCCC
Confidence            33333456799999999988878764444 4454443444 2   221  112245556667777889987642      


Q ss_pred             -EEEEcccchh-hhHHHH-H------HhccCCHHHHhc
Q 024523          153 -SVFVQSHVRA-HVELMW-L------LSSATPIGWLNK  181 (266)
Q Consensus       153 -~if~qSd~~~-~~eL~w-~------Ls~~~tv~rL~R  181 (266)
                       ..|+||+..+ |.+..- +      +-|.+|-.++++
T Consensus       100 ~~py~QS~r~~~Y~~~~~~L~~~G~aY~C~ct~~el~~  137 (512)
T 4gri_A          100 YAPYVQSQRSAIYKQYAKYLIESGHAYYCYCSPERLER  137 (512)
T ss_dssp             TCCCBGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHH
T ss_pred             CCCccccchHHHHHHHHHHHHHcCCccccccchHHHHH
Confidence             3578998543 222211 1      467888776654

>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}

Probab=95.28  E-value=0.044  Score=56.94  Aligned_cols=94  Identities=13%  Similarity=0.047  Sum_probs=60.3

Q ss_pred             eEEEecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcc
Q 024523           80 RIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQS  158 (266)
Q Consensus        80 ~iytGi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~qS  158 (266)
                      +.=.+=.|||.+||||.-.++-+|..-+. +..+++=|-|.    ++.  ....+....+.+++..+|++++- .+++||
T Consensus        68 ~tRFaPSPtG~LHIGhARtAL~n~l~Ar~~gG~fiLRIEDT----D~~--R~~~e~~~~IledL~wLGl~wde-~~~~qS  140 (851)
T 2hz7_A           68 VTRFPPDPSGYAHLGHVFASLLDFNTARQYGGQFNLRMDDT----NPE--LARQEYVDSIADDLKWLGLDWGE-HFYYAS  140 (851)
T ss_dssp             EEEECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCC----CTT--TCCHHHHHHHHHHHHHHTCCCTT-CEEEGG
T ss_pred             EEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcC----Ccc--cccHHHHHHHHHHHHHcCCCCCC-CcccHh
Confidence            33346677899999999888877754444 44555556664    221  23456777888889999999853 589999


Q ss_pred             cchh-hhHHHHH-------HhccCCHHHHh
Q 024523          159 HVRA-HVELMWL-------LSSATPIGWLN  180 (266)
Q Consensus       159 d~~~-~~eL~w~-------Ls~~~tv~rL~  180 (266)
                      +..+ |.+..-.       +-|.++-.++.
T Consensus       141 er~d~y~e~a~~LI~~G~AY~c~ct~eel~  170 (851)
T 2hz7_A          141 DYFDRYYAYAEQLIRQGDAYVESVSPEELS  170 (851)
T ss_dssp             GGHHHHHHHHHHHHHTTSEEEECSCHHHHH
T ss_pred             hhHHHHHHHHHHHHHCCCcEeecCCHHHHH
Confidence            9643 3332222       35666665543

>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}

Probab=95.10  E-value=0.11  Score=50.48  Aligned_cols=80  Identities=18%  Similarity=0.230  Sum_probs=49.7

Q ss_pred             CceEEEecC--CCCcchhhhHHHHH--HHHHHHhc--cCcEEE-EEecceeeec-------CCCHHH-HHHHHHHHHHHH
Q 024523           78 KKRIVSGVQ--PTGSIHLGNYLGAI--KNWIALQN--SYETLF-FIVDLHAITL-------PYDTQQ-LSKATRETAAIY  142 (266)
Q Consensus        78 ~~~iytGi~--PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~i-lIADlhA~~~-------~~~~e~-ir~~~~~~~~~~  142 (266)
                      +....+|-=  |||.+||||..+++  .-+.++++  |++|.+ .-.|.|..-.       ..++++ ..+....+.+++
T Consensus        25 ~~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~~~l  104 (536)
T 4dlp_A           25 EKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTSAFRRMA  104 (536)
T ss_dssp             CEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred             CCEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            344455544  55999999987765  33455554  899755 4455554311       124433 455567788888


Q ss_pred             HHcCcCCCceEEEEccc
Q 024523          143 LACGIDNSKASVFVQSH  159 (266)
Q Consensus       143 lA~GlDp~Kt~if~qSd  159 (266)
                      .++|++.+  .++.-++
T Consensus       105 ~~lgi~~d--~~~~t~~  119 (536)
T 4dlp_A          105 EVLNSSND--DYIRTSE  119 (536)
T ss_dssp             HHTTCCCS--EEEETTS
T ss_pred             HHcCCCCC--cceeCCC
Confidence            99999987  4555554

>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1

Probab=94.79  E-value=0.063  Score=52.29  Aligned_cols=79  Identities=22%  Similarity=0.294  Sum_probs=51.4

Q ss_pred             CceEEEecCCCCcchhhhHHHHHHHH--HH-Hhc-cCcEE-EEEecceeeec--CC------------C-----------
Q 024523           78 KKRIVSGVQPTGSIHLGNYLGAIKNW--IA-LQN-SYETL-FFIVDLHAITL--PY------------D-----------  127 (266)
Q Consensus        78 ~~~iytGi~PTG~lHLGh~ig~i~k~--~~-LQ~-g~~v~-ilIADlhA~~~--~~------------~-----------  127 (266)
                      ...+.+|--|||.+||||.-.++..+  .+ |.. |+++. ++-.|+|.-..  |.            +           
T Consensus        21 ~yv~~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~~~~p~p~~~~  100 (523)
T 1irx_A           21 KYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGCH  100 (523)
T ss_dssp             EEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSCCTTSSS
T ss_pred             eEEECCCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCcccCCcchhhH
Confidence            45666799999999999988777442  22 333 77764 44466665211  10            0           


Q ss_pred             HHHHHHHHHHHHHHHHHcCcCCCceEEEEccc
Q 024523          128 TQQLSKATRETAAIYLACGIDNSKASVFVQSH  159 (266)
Q Consensus       128 ~e~ir~~~~~~~~~~lA~GlDp~Kt~if~qSd  159 (266)
                      .+-..++...+.+++..+|++++   +|.||+
T Consensus       101 ~~~~~~~~~~~~~~l~~Lgi~~D---~~~~se  129 (523)
T 1irx_A          101 ESYAEHFMRKFEEEVEKLGIEVD---LLYASE  129 (523)
T ss_dssp             SSHHHHHHHHHHHHHHTTTCCCE---EEEHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCCce---EEechh
Confidence            12235567778888889999876   458998

>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1

Probab=94.78  E-value=0.085  Score=53.54  Aligned_cols=75  Identities=15%  Similarity=0.250  Sum_probs=50.7

Q ss_pred             CCceEEEec-CCCCcchhhhHHH-HH--HHHHHHhc--cCcEEEEEe-cceeeec-------CCCHH-HHHHHHHHHHHH
Q 024523           77 VKKRIVSGV-QPTGSIHLGNYLG-AI--KNWIALQN--SYETLFFIV-DLHAITL-------PYDTQ-QLSKATRETAAI  141 (266)
Q Consensus        77 ~~~~iytGi-~PTG~lHLGh~ig-~i--~k~~~LQ~--g~~v~ilIA-DlhA~~~-------~~~~e-~ir~~~~~~~~~  141 (266)
                      +++.|.+++ -|+|.+||||..+ .+  .-+.+++.  |++|.+..+ |.|..-.       ..++. -+.++...+.++
T Consensus         2 ~~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~~   81 (722)
T 1rqg_A            2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKIT   81 (722)
T ss_dssp             CEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred             CCEEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            346666766 6789999999987 44  34666666  899876655 4443311       12443 455667778889


Q ss_pred             HHHcCcCCCc
Q 024523          142 YLACGIDNSK  151 (266)
Q Consensus       142 ~lA~GlDp~K  151 (266)
                      +.++|++.|.
T Consensus        82 ~~~lgis~D~   91 (722)
T 1rqg_A           82 FQRAKISFDF   91 (722)
T ss_dssp             HHHHTCCCSE
T ss_pred             HHHhCCCCCC
Confidence            9999998874

>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A

Probab=94.33  E-value=0.18  Score=48.25  Aligned_cols=80  Identities=18%  Similarity=0.191  Sum_probs=50.0

Q ss_pred             CceEEEecCC--CCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-cceeeec-------CCCHH-HHHHHHHHHHHHH
Q 024523           78 KKRIVSGVQP--TGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAITL-------PYDTQ-QLSKATRETAAIY  142 (266)
Q Consensus        78 ~~~iytGi~P--TG~lHLGh~ig~i--~k~~~LQ~--g~~v~ilIA-DlhA~~~-------~~~~e-~ir~~~~~~~~~~  142 (266)
                      +..+.+|-=|  +|.+||||....+  .-+.++++  |++|.+..+ |.|..-.       ..++. -..++...+.+++
T Consensus         3 ~~~~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~   82 (500)
T 2d5b_A            3 KVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAW   82 (500)
T ss_dssp             CEEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred             CcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            3455566555  7999999988755  33555554  888866533 3332211       01343 3445666788899


Q ss_pred             HHcCcCCCceEEEEccc
Q 024523          143 LACGIDNSKASVFVQSH  159 (266)
Q Consensus       143 lA~GlDp~Kt~if~qSd  159 (266)
                      .++|++++  .++..++
T Consensus        83 ~~lgi~~d--~~~~t~~   97 (500)
T 2d5b_A           83 DLLGIAYD--DFIRTTE   97 (500)
T ss_dssp             HHTTCCCS--EEEETTS
T ss_pred             HHhCCcCC--CCcccCC
Confidence            99999887  4566666

>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*

Probab=94.24  E-value=0.18  Score=48.30  Aligned_cols=80  Identities=15%  Similarity=0.245  Sum_probs=50.8

Q ss_pred             CceEEEecC--CCCcchhhhHHHHH--HHHHHHhc--cCcEEEEE-ecceeeec-C------CCH-HHHHHHHHHHHHHH
Q 024523           78 KKRIVSGVQ--PTGSIHLGNYLGAI--KNWIALQN--SYETLFFI-VDLHAITL-P------YDT-QQLSKATRETAAIY  142 (266)
Q Consensus        78 ~~~iytGi~--PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~ilI-ADlhA~~~-~------~~~-e~ir~~~~~~~~~~  142 (266)
                      +..+.+|-=  |||.+||||....+  .-+.++++  |++|.+.. .|.|..-. .      .++ +-+.++...+.+++
T Consensus         5 ~~~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~   84 (497)
T 2csx_A            5 KKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKKLW   84 (497)
T ss_dssp             CEEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHHHH
T ss_pred             CcEEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            334555544  66999999987755  33555554  88876553 34443311 0      134 34556677888899


Q ss_pred             HHcCcCCCceEEEEccc
Q 024523          143 LACGIDNSKASVFVQSH  159 (266)
Q Consensus       143 lA~GlDp~Kt~if~qSd  159 (266)
                      .++|++++  .++..++
T Consensus        85 ~~lgi~~d--~~~~t~~   99 (497)
T 2csx_A           85 EFLKIEYT--KFIRTTD   99 (497)
T ss_dssp             HHTTCCCS--EEEETTS
T ss_pred             HHhCCcCC--CCccCCC
Confidence            99999988  4566776

>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*

Probab=92.87  E-value=0.33  Score=46.76  Aligned_cols=78  Identities=14%  Similarity=0.238  Sum_probs=48.1

Q ss_pred             eEEEec-CCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-cceeeec-------CCCHHH-HHHHHHHHHHHHHHc
Q 024523           80 RIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAITL-------PYDTQQ-LSKATRETAAIYLAC  145 (266)
Q Consensus        80 ~iytGi-~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~ilIA-DlhA~~~-------~~~~e~-ir~~~~~~~~~~lA~  145 (266)
                      .+.|.+ -|+|.+||||....+  .-+.++++  |++|.+..+ |.|..-.       ..++.+ .+++..++.+++.++
T Consensus        15 ~i~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l   94 (524)
T 2x1l_A           15 YITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVFQRLQEKL   94 (524)
T ss_dssp             EEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHT
T ss_pred             EEeeCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence            334433 457999999987755  33555554  888866433 4333211       023433 455667788899999


Q ss_pred             CcCCCceEEEEccc
Q 024523          146 GIDNSKASVFVQSH  159 (266)
Q Consensus       146 GlDp~Kt~if~qSd  159 (266)
                      |++++  .++..++
T Consensus        95 gi~~d--~~~~t~~  106 (524)
T 2x1l_A           95 NISFD--RFIRTSD  106 (524)
T ss_dssp             TCCCS--EEEETTS
T ss_pred             CCcCC--CCeecCC
Confidence            99876  4566665

>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*

Probab=92.13  E-value=0.28  Score=51.11  Aligned_cols=84  Identities=13%  Similarity=0.047  Sum_probs=52.5

Q ss_pred             CCCceEEEec-CCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-cceeeec-------CCCH-HHHHHHHHHHHHH
Q 024523           76 SVKKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAITL-------PYDT-QQLSKATRETAAI  141 (266)
Q Consensus        76 ~~~~~iytGi-~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~ilIA-DlhA~~~-------~~~~-e~ir~~~~~~~~~  141 (266)
                      ++++++++++ -|||.+||||....+  .-+.+++.  |++|.+..+ |.|.+-.       ..++ +...+++..+.++
T Consensus        52 ~~~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~i~~~~~~  131 (880)
T 4arc_A           52 KEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKNQ  131 (880)
T ss_dssp             SCEEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCSTHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            3456777776 678999999988754  22455554  899866544 5554321       1133 3345667778889


Q ss_pred             HHHcCcCCCceEEEEccc
Q 024523          142 YLACGIDNSKASVFVQSH  159 (266)
Q Consensus       142 ~lA~GlDp~Kt~if~qSd  159 (266)
                      +.++|+..|=...|+-++
T Consensus       132 l~~LGis~Dw~~~~~T~d  149 (880)
T 4arc_A          132 LKMLGFGYDWSRELATCT  149 (880)
T ss_dssp             HHHTTCCCCGGGCEETTS
T ss_pred             HHHhCCCcCCCCCEEcCC
Confidence            999998776333343333

>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}

Probab=91.05  E-value=1.1  Score=42.27  Aligned_cols=79  Identities=15%  Similarity=0.024  Sum_probs=48.9

Q ss_pred             eEEEecCCCCcchhhhHHHHH--HHHHHHhc--cCcEEE-EEecceeeec-------CCCHH-HHHHHHHHHHHHHHHcC
Q 024523           80 RIVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLF-FIVDLHAITL-------PYDTQ-QLSKATRETAAIYLACG  146 (266)
Q Consensus        80 ~iytGi~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~i-lIADlhA~~~-------~~~~e-~ir~~~~~~~~~~lA~G  146 (266)
                      ..++|-=|.|.+||||..+++  .-+.++++  |++|.+ .-.|.|..-.       ..++. -..++...+.+++.++|
T Consensus        42 ~y~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A~~~g~~~~~~~~~~~~~~~~~~~~Lg  121 (414)
T 3c8z_A           42 MYVCGITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFREDMAALR  121 (414)
T ss_dssp             EEECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEeCCCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcC
Confidence            345565666999999987755  33445544  899754 4556664211       02343 34555677888899999


Q ss_pred             cC-CCceEEEEcccc
Q 024523          147 ID-NSKASVFVQSHV  160 (266)
Q Consensus       147 lD-p~Kt~if~qSd~  160 (266)
                      +. ++  .++..++.
T Consensus       122 i~~~d--~~~r~t~~  134 (414)
T 3c8z_A          122 VLPPH--DYVAATDA  134 (414)
T ss_dssp             CCCCS--EEEEGGGC
T ss_pred             CCCCc--ceecccch
Confidence            98 65  34455553

>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A

Probab=89.78  E-value=0.75  Score=47.70  Aligned_cols=74  Identities=18%  Similarity=0.180  Sum_probs=45.3

Q ss_pred             CCceEEEe-cCCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-cceeee------------c--CCCH------HH
Q 024523           77 VKKRIVSG-VQPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAIT------------L--PYDT------QQ  130 (266)
Q Consensus        77 ~~~~iytG-i~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~ilIA-DlhA~~------------~--~~~~------e~  130 (266)
                      +++.|++| --|||.+|+||.+..+  .-+.+++.  |+++.+..+ |-|.+-            +  +.+.      ++
T Consensus        34 ~~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~g~~~~~~~~~~f~~~  113 (862)
T 1gax_A           34 PPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLER  113 (862)
T ss_dssp             CEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHTTTTTTTSCCSCCCTTHHHHH
T ss_pred             CcEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccCCCCcHHHHHHHHHHHHcCCChHHcCHHHHHHH
Confidence            45777776 3568999999988644  23555555  899876655 555440            1  1111      12


Q ss_pred             ----HHHHHHHHHHHHHHcCcCCC
Q 024523          131 ----LSKATRETAAIYLACGIDNS  150 (266)
Q Consensus       131 ----ir~~~~~~~~~~lA~GlDp~  150 (266)
                          ..+++..+.+++..+|+..|
T Consensus       114 ~~~~~~~~~~~~~~q~~rlG~s~D  137 (862)
T 1gax_A          114 VWQWKEESGGTILKQLKRLGASAD  137 (862)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHhCcccc
Confidence                34445566778888897554

>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}

Probab=89.66  E-value=0.96  Score=44.28  Aligned_cols=74  Identities=15%  Similarity=0.123  Sum_probs=45.0

Q ss_pred             CceEE-EecCCCCcchhhhHHHHH--HHHHHHhc--cCcEEEE--Eecc---------e--eeecC-----CCH-HHHHH
Q 024523           78 KKRIV-SGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLFF--IVDL---------H--AITLP-----YDT-QQLSK  133 (266)
Q Consensus        78 ~~~iy-tGi~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~il--IADl---------h--A~~~~-----~~~-e~ir~  133 (266)
                      +..+| +|-=|.|.+||||..+.+  .-+.++++  |++|.+.  |+|.         |  +++..     .++ +-..+
T Consensus        42 ~v~~YvcgPTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~~g~~~~e~a~~  121 (501)
T 3sp1_A           42 NVKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVYEISEF  121 (501)
T ss_dssp             CEEEEECCCBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC-------------------CCHHHHHHH
T ss_pred             cceEEeCCCcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCCCCCCcHHHHHHHHcCCCHHHHHHH
Confidence            44444 454444999999987755  22444444  8998776  4444         2  23321     244 34566


Q ss_pred             HHHHHHHHHHHcCcCCCc
Q 024523          134 ATRETAAIYLACGIDNSK  151 (266)
Q Consensus       134 ~~~~~~~~~lA~GlDp~K  151 (266)
                      ++..+.+++.++|+.++.
T Consensus       122 ~~~~f~~d~~~Lgi~~d~  139 (501)
T 3sp1_A          122 FTEAFFNDCRKLNIVYPD  139 (501)
T ss_dssp             HHHHHHHHHHHTTCCCCS
T ss_pred             HHHHHHHHHHHcCCCCCC
Confidence            778888899999998764

>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*

Probab=87.73  E-value=0.85  Score=47.33  Aligned_cols=74  Identities=16%  Similarity=0.191  Sum_probs=47.2

Q ss_pred             CCceEEEe-cCCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-cceeeec-------CCCH-HHHHHHHHHHHHHH
Q 024523           77 VKKRIVSG-VQPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAITL-------PYDT-QQLSKATRETAAIY  142 (266)
Q Consensus        77 ~~~~iytG-i~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~ilIA-DlhA~~~-------~~~~-e~ir~~~~~~~~~~  142 (266)
                      +++++.+| --|+|.+||||....+  .-+.+++.  |++|.+..+ |.|.+-.       ..++ +-..+++..+.+++
T Consensus        33 ~k~~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~Glpie~~a~k~g~~~~~~~~~~~~~~~~~~  112 (878)
T 2v0c_A           33 GKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESL  112 (878)
T ss_dssp             -EEEEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            35777777 4456999999988754  23445555  898876544 4443311       0133 34566677888899


Q ss_pred             HHcCcCCC
Q 024523          143 LACGIDNS  150 (266)
Q Consensus       143 lA~GlDp~  150 (266)
                      .++|+..+
T Consensus       113 ~~LGi~~D  120 (878)
T 2v0c_A          113 RLMGILYD  120 (878)
T ss_dssp             HHTTCCCC
T ss_pred             HHhCCccC
Confidence            99998765

>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B

Probab=85.27  E-value=1.1  Score=42.97  Aligned_cols=80  Identities=13%  Similarity=0.098  Sum_probs=45.3

Q ss_pred             ceEE-EecCCCCcchhhhHHHHH--HHHHHHhc--cCcEEEE--Eecceeeec------CCCHHH-HHHHHHHHHHHHHH
Q 024523           79 KRIV-SGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLFF--IVDLHAITL------PYDTQQ-LSKATRETAAIYLA  144 (266)
Q Consensus        79 ~~iy-tGi~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~il--IADlhA~~~------~~~~e~-ir~~~~~~~~~~lA  144 (266)
                      ..+| +|--|.|.+||||.-+++  .-+.++.+  |++|.+.  +.|.=.-+.      ..++++ ..+....+.+++.+
T Consensus        23 v~~yv~gPt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~~g~~~~~~~~~~~~~f~~~~~~  102 (461)
T 1li5_A           23 VGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDFDA  102 (461)
T ss_dssp             EEEEECCCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             eeEEEcCCcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence            4444 444444999999987655  33444444  8888655  344321110      023433 44556778888999


Q ss_pred             cCcCCCceEEEEccc
Q 024523          145 CGIDNSKASVFVQSH  159 (266)
Q Consensus       145 ~GlDp~Kt~if~qSd  159 (266)
                      +|+.+.. .+...|+
T Consensus       103 LgI~~~d-~~~r~t~  116 (461)
T 1li5_A          103 LNILRPD-MEPRATH  116 (461)
T ss_dssp             TTCCCCS-BCCBGGG
T ss_pred             cCCCCCc-ccccccc
Confidence            9998521 2344555

>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}

Probab=84.50  E-value=1.1  Score=45.59  Aligned_cols=45  Identities=18%  Similarity=0.262  Sum_probs=28.5

Q ss_pred             CceEEEec-CCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-cceee
Q 024523           78 KKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAI  122 (266)
Q Consensus        78 ~~~iytGi-~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~ilIA-DlhA~  122 (266)
                      ++.|.+|. -|+|.+||||....+  .-+.+++.  |++|.+..+ |.|.+
T Consensus        35 ~~~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~D~~G~   85 (810)
T 1wkb_A           35 KFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGS   85 (810)
T ss_dssp             EEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBBCCBS
T ss_pred             cEEEEeCCCCCCCCCccccchhHHHHHHHHHHHHcCCCccCcCCccCCCCC
Confidence            45555554 357999999988755  33555555  888876543 44444

>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}

Probab=82.83  E-value=2.3  Score=41.03  Aligned_cols=73  Identities=14%  Similarity=0.054  Sum_probs=44.7

Q ss_pred             CceE-EEecCCCCcchhhhHHHHH--HHHHHHhc--cCcEEEE-Eecceee--ec-----CCCHH-HHHHHHHHHHHHHH
Q 024523           78 KKRI-VSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLFF-IVDLHAI--TL-----PYDTQ-QLSKATRETAAIYL  143 (266)
Q Consensus        78 ~~~i-ytGi~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~il-IADlhA~--~~-----~~~~e-~ir~~~~~~~~~~l  143 (266)
                      ++.+ ++|--|.|.+||||....+  .-+.++.+  |++|.+. =.|.|.-  +.     ..++. -..+++..+.+++.
T Consensus        25 ~v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~~~g~~~~e~a~~~~~~f~~d~~  104 (462)
T 3tqo_A           25 KVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRAGENKESPAALAERFIQILHEDEK  104 (462)
T ss_dssp             EEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            3444 4677777999999987755  22344433  8887554 3344321  10     01333 34566677888999


Q ss_pred             HcCcCCC
Q 024523          144 ACGIDNS  150 (266)
Q Consensus       144 A~GlDp~  150 (266)
                      ++|+.++
T Consensus       105 ~LgI~~d  111 (462)
T 3tqo_A          105 ALRVLSP  111 (462)
T ss_dssp             HHTCCCC
T ss_pred             HcCCCCC
Confidence            9999864

>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1

Probab=82.36  E-value=0.73  Score=45.54  Aligned_cols=41  Identities=20%  Similarity=0.272  Sum_probs=30.7

Q ss_pred             ceEEEecCCCCcchhhhHHHHH--HHHHHHhc--cCcEEE--EEecc
Q 024523           79 KRIVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLF--FIVDL  119 (266)
Q Consensus        79 ~~iytGi~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~i--lIADl  119 (266)
                      ..-|+|--|+|++||||.-+++  .-+.++.+  |++|+.  -|.|+
T Consensus       106 ~ve~~spn~~~~~HiGH~R~~iigD~laR~l~~~G~~V~~~~~i~D~  152 (592)
T 1iq0_A          106 LVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDT  152 (592)
T ss_dssp             EEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTT
T ss_pred             EEEeeCCCCCCCCcchHHHHHHHHHHHHHHHHHcCCceEEEeccCCc
Confidence            3447888899999999987755  44666666  888865  47777

>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*

Probab=81.07  E-value=0.63  Score=47.71  Aligned_cols=46  Identities=15%  Similarity=0.182  Sum_probs=31.3

Q ss_pred             CCceEEEec-CCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEE-ecceee
Q 024523           77 VKKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFI-VDLHAI  122 (266)
Q Consensus        77 ~~~~iytGi-~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~ilI-ADlhA~  122 (266)
                      +++.++.|. -|||.+||||..+.+  .-+.+++.  |++|.+.. .|-|.+
T Consensus        38 ~~f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D~~Gl   89 (821)
T 1ile_A           38 PRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGL   89 (821)
T ss_dssp             CBCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCHH
T ss_pred             CcEEEecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCcccccccccCCCc
Confidence            457777777 788999999988744  22445554  88876554 455544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	266
d1i6la_	326	c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS)	1e-52
d1r6ta2	386	c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (	9e-36
d1n3la_	339	c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Hum	5e-35
d1h3fa1	343	c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS)	1e-19
d1j1ua_	306	c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Arc	8e-19

>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus stearothermophilus [TaxId: 1422]} Length = 326

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tryptophanyl-tRNA synthetase (TrpRS)
species: Bacillus stearothermophilus [TaxId: 1422]

 Score =  171 bits (435), Expect = 1e-52
 Identities = 90/167 (53%), Positives = 116/167 (69%), Gaps = 2/167 (1%)

Query: 79  KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
           K I SG+QP+G I +GNY+GA++ ++ LQ+ Y   F IVD HAIT+  D  +L +  R  
Sbjct: 2   KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 61

Query: 139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
           AA+YLA GID ++A++F+QS V AH +  W+L     IG L +M QFKEKS      + G
Sbjct: 62  AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKSAGKEAVSAG 121

Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYG 245
             LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N  YG
Sbjct: 122 --LLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYG 166

>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]} Length = 386

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tryptophanyl-tRNA synthetase (TrpRS)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (324), Expect = 9e-36
 Identities = 29/181 (16%), Positives = 59/181 (32%), Gaps = 18/181 (9%)

Query: 78  KKRIVSGVQPTG-SIHLGNYLGAIKN-WIALQNSYETLFFIVDLHAI-TLPYDTQQLSKA 134
              + +G  P+  ++H+G+ +  I   W+    +   +  + D            Q    
Sbjct: 74  PFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGD 133

Query: 135 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 194
             E A   +ACG D +K  +F                +   I       Q K        
Sbjct: 134 AVENAKDIIACGFDINKTFIFSDLDY--MGMSSGFYKNVVKIQKHVTFNQVKGIFGF--T 189

Query: 195 ENVGVALLTYPVLMASDILLYQSDF-----------VPVGEDQKQHLELTRELAERVNYL 243
           ++  +  +++P + A+                    +P   DQ  +  +TR++A R+ Y 
Sbjct: 190 DSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYP 249

Query: 244 Y 244
            
Sbjct: 250 K 250

>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapiens) [TaxId: 9606]} Length = 339

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  126 bits (316), Expect = 5e-35
 Identities = 29/174 (16%), Positives = 54/174 (31%), Gaps = 7/174 (4%)

Query: 78  KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
           + +I  G   TG  H+  ++   K    L+   E      DLHA              R 
Sbjct: 32  ELKIYWGTATTGKPHVAYFVPMSKIADFLKAGCEVTILFADLHAYLDNMKAPWELLELRV 91

Query: 138 TAAI------YLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHK 191
           +           + G+   K      +  +   E    +   + +   +   +   +  K
Sbjct: 92  SYYENVIKAMLESIGVPLEKLKFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAGAEVVK 151

Query: 192 AGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYG 245
              E+  ++ L YP L A D    + D    G DQ++      +    + Y   
Sbjct: 152 Q-VEHPLLSGLLYPGLQALDEEYLKVDAQFGGIDQRKIFTFAEKYLPALGYSKR 204

>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]} Length = 343

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Thermus thermophilus [TaxId: 274]

 Score = 84.7 bits (208), Expect = 1e-19
 Identities = 24/177 (13%), Positives = 54/177 (30%), Gaps = 12/177 (6%)

Query: 78  KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATR 136
              +  G  PT   +HLG+ +   K     +  ++ +  I D   +      +  ++   
Sbjct: 33  PLTVKLGADPTRPDLHLGHAVVLRKMRQFQELGHKVVLIIGDFTGMIGDPSGRSKTRPPL 92

Query: 137 ETAAIY-----------LACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQF 185
                                 +     +   S     +    ++   + +     + + 
Sbjct: 93  TLEETRENAKTYVAQAGKILRQEPHLFELRYNSEWLEGLTFKEVVRLTSLMTVAQMLERE 152

Query: 186 KEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNY 242
             K     G  + +  L YP   A D +  ++D    G DQ+ +L + RE+      
Sbjct: 153 DFKKRYEAGIPISLHELLYPFAQAYDSVAIRADVEMGGTDQRFNLLVGREVQRAYGQ 209

>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 306

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 82.0 bits (201), Expect = 8e-19
 Identities = 42/179 (23%), Positives = 74/179 (41%), Gaps = 7/179 (3%)

Query: 78  KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITL-PYDTQQLSKAT 135
           +K    G +P+G IHLG+YL  IK  I LQN+ ++ +  + DLHA      +  ++ K  
Sbjct: 28  EKSAYIGFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLHAYLNQKGELDEIRKIG 86

Query: 136 RETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGE 195
                ++ A G+             + +   ++ L+  T +    + ++          E
Sbjct: 87  DYNKKVFEAMGLKAKYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMEL----IAREDE 142

Query: 196 NVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGG 254
           N  VA + YP++  +DI     D    G +Q++   L REL  +            L G
Sbjct: 143 NPKVAEVIYPIMQVNDIHYLGVDVAVGGMEQRKIHMLARELLPKKVVCIHNPVLTGLDG 201

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	266
d1i6la_	326	Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus ste	100.0
d1n3la_	339	Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapie	100.0
d1r6ta2	386	Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo	100.0
d1j1ua_	306	Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanoc	100.0
d1h3fa1	343	Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophi	100.0
d1jila_	323	Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus au	99.96
d2ts1a_	319	Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearoth	99.96
d1li5a2	315	Cysteinyl-tRNA synthetase (CysRS) {Escherichia col	96.59
d1nzja_	286	Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia c	96.47
d1gtra2	331	Glutaminyl-tRNA synthetase (GlnRS) {Escherichia co	96.32
d1pfva2	350	Methionyl-tRNA synthetase (MetRS) {Escherichia col	96.2
d1j09a2	305	Glutamyl-tRNA synthetase (GluRS) {Thermus thermoph	96.07
d1irxa2	317	Class I lysyl-tRNA synthetase {Archaeon Pyrococcus	95.9
d2d5ba2	348	Methionyl-tRNA synthetase (MetRS) {Thermus thermop	95.79
d1ivsa4	425	Valyl-tRNA synthetase (ValRS) {Thermus thermophilu	95.28
d1rqga2	361	Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys	92.99
d1h3na3	494	Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil	92.77
d1ilea3	452	Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop	92.11
d1f7ua2	348	Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa	90.1
d1ffya3	450	Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus	83.44
d1iq0a2	370	Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi	83.08

>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tryptophanyl-tRNA synthetase (TrpRS)
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=1.1e-54  Score=401.18  Aligned_cols=168  Identities=54%  Similarity=0.857  Sum_probs=161.3

Q ss_pred             ceEEEecCCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcc
Q 024523           79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQS  158 (266)
Q Consensus        79 ~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~qS  158 (266)
                      .+||||++|||.||||||+|+|++|++||++++++|+||||||++++.+++++++++++++++|+|+|+||+|++||+||
T Consensus         2 ~~v~tG~~PSG~~HlG~~~g~i~~~~~lq~~~~~~i~iAD~halt~~~~~~~l~~~~~~~~~~~lA~G~dp~k~~i~~qS   81 (326)
T d1i6la_           2 KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRLAALYLAVGIDPTQATLFIQS   81 (326)
T ss_dssp             CEEEEEECCCSCCBHHHHHHTHHHHHHHTTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTSEEEEGG
T ss_pred             CeeEeCcCCCCccHHHHHHHHHHHHHHHhCCCCEEEEeehHHhhccCCCHHHHHHHHHHHHHHhhhhhccccceEEEeec
Confidence            48999999999999999999999999999999999999999999998899999999999999999999999999999999


Q ss_pred             cchhhhHHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEecCcchHHHHHHHHHHH
Q 024523          159 HVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAE  238 (266)
Q Consensus       159 d~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ~~hleLaRdiA~  238 (266)
                      ++++|.++.|+|++.+++++++|+.+|+++.+.  .+++++|+|+||+|||||||+|++|+||||+||+||+|||||+|+
T Consensus        82 ~~~~~~el~~~l~~~~~~~~l~r~~~~k~~~~~--~~~~~~g~l~YP~lQaADIl~~~~d~vpvG~DQ~~h~eltRdia~  159 (326)
T d1i6la_          82 EVPAHAQAAWMLQCIVYIGELERMTQFKEKSAG--KEAVSAGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAE  159 (326)
T ss_dssp             GCTHHHHHHHHHHTTSCHHHHHTCHHHHHHHTT--CSSCCHHHHTHHHHHHHHHHTTTCSEEECCGGGHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHhhhhhhhhhhcccchhhccc--cccCCccccccccccchhHHhcCccccccccchHHHHHHHHHHHH
Confidence            999999999999999999999999999998654  378899999999999999999999999999999999999999999


Q ss_pred             HhhhhhCCCc
Q 024523          239 RVNYLYGGRK  248 (266)
Q Consensus       239 r~n~~yg~~~  248 (266)
                      |||+.||..+
T Consensus       160 r~n~~~~~~~  169 (326)
T d1i6la_         160 RFNKRYGELF  169 (326)
T ss_dssp             HHHHHHCSCC
T ss_pred             HhhhccCCcc
Confidence            9999998543

>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.7e-43  Score=322.23  Aligned_cols=180  Identities=19%  Similarity=0.115  Sum_probs=134.5

Q ss_pred             CCCceEEEecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeec-CC-CHHHHHHHH----HHHHHHHHHcCcC
Q 024523           76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY-DTQQLSKAT----RETAAIYLACGID  148 (266)
Q Consensus        76 ~~~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~-~~-~~e~ir~~~----~~~~~~~lA~GlD  148 (266)
                      +++++||+||+|||++|||||+++++ +..+|+ |++++|+|||+||+++ +. +.+....+.    ..+.+.|+|+|+|
T Consensus        30 ~~~~~vy~G~~PTg~lHlG~~l~~~~-l~~~q~~g~~~~~~IaD~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~d  108 (339)
T d1n3la_          30 ERELKIYWGTATTGKPHVAYFVPMSK-IADFLKAGCEVTILFADLHAYLDNMKAPWELLELRVSYYENVIKAMLESIGVP  108 (339)
T ss_dssp             TSCCEEEEEECCSSCCBGGGHHHHHH-HHHHHHTTCEEEEEECHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             cCCCEEEEeeCCCCccHHHHHHHHHH-HHHHHHCCCcEEEEecchhhhccCCCCchHHHHHHHHHHHHHHHHHHHhhccC
Confidence            46799999999999999999999885 445777 9999999999999997 43 333333222    2345678899999


Q ss_pred             CCceEEEEcccchhhhHHHHH---HhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEecCc
Q 024523          149 NSKASVFVQSHVRAHVELMWL---LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGED  225 (266)
Q Consensus       149 p~Kt~if~qSd~~~~~eL~w~---Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpvG~D  225 (266)
                      |+|+.||+||+|..+.++.|.   ++..+++.+..+..  +.+.+.  .+++++|+|+||+||||||+++++|+||||.|
T Consensus       109 ~~k~~i~~~sd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~g~f~YP~lQaaDil~~~ad~v~~G~D  184 (339)
T d1n3la_         109 LEKLKFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAG--AEVVKQ--VEHPLLSGLLYPGLQALDEEYLKVDAQFGGID  184 (339)
T ss_dssp             CTTEEEEEGGGTTTSHHHHHHHHHHHTTSCHHHHHHHT--TTTSCC--CSSCCHHHHHHHHHHHHHHHHTTCSEEEEEGG
T ss_pred             hHHheeeecChHhhhhhHHHHHhhHHHHHHHHHHHHHH--HHHhcc--CCCCccccccccHHHHHHHHhccCCccccchh
Confidence            999999999999766655554   34444444332221  122221  47789999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHhhhhhCCCc---------ccccCCC--CCcee
Q 024523          226 QKQHLELTRELAERVNYLYGGRK---------WKKLGGR--GGAIF  260 (266)
Q Consensus       226 Q~~hleLaRdiA~r~n~~yg~~~---------~~k~g~~--~~~if  260 (266)
                      |++|++++||+|+|||+.++...         |.||+++  +++||
T Consensus       185 Q~~~i~l~rd~a~r~~~~~~~~l~~pll~~l~g~kmsks~~~~~I~  230 (339)
T d1n3la_         185 QRKIFTFAEKYLPALGYSKRVHLMNPMVPGLTGSKMSSSEEESKID  230 (339)
T ss_dssp             GHHHHHHHHHHGGGGTCCCCEEEEECCCCCSSCC-------CCSCB
T ss_pred             HHHHHHHHHHHHhhhccCcceeeeeccccccccccccccchhhccc
Confidence            99999999999999998886433         5677765  33555

>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tryptophanyl-tRNA synthetase (TrpRS)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5e-42  Score=324.60  Aligned_cols=163  Identities=18%  Similarity=0.264  Sum_probs=141.7

Q ss_pred             CCCceEEEecCCCCc-chhhhHHHHHHHHHHHhc--cCcEEEEEecceeeec-CCCHHHHHHHHHHHHHHHHHcCcCCCc
Q 024523           76 SVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN--SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSK  151 (266)
Q Consensus        76 ~~~~~iytGi~PTG~-lHLGh~ig~i~k~~~LQ~--g~~v~ilIADlhA~~~-~~~~e~ir~~~~~~~~~~lA~GlDp~K  151 (266)
                      ++|+++|||++|||. ||||||+++++ .+.||+  +++++|+|||+||+++ +.+++++++++++++++|+|+||||+|
T Consensus        72 gkp~~vytG~~PSg~~lHlGh~v~~~~-~~~~q~~~~~~v~i~iaD~~a~~~~~~~~~e~~~~~~e~~~~~lA~GlDp~k  150 (386)
T d1r6ta2          72 KKPFYLYTGRGPSSEAMHVGHLIPFIF-TKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINK  150 (386)
T ss_dssp             TCCEEEEEEECCCTTCCBGGGHHHHHH-HHHHHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTCCCTTS
T ss_pred             CCCeEEEeccCCCCchhHHHHHHHHHH-HHHHHHhcccceEEEecchHhhhcccCCHHHHHHHHHHHHHHHHHhCCCccc
Confidence            468999999999997 89999999884 334775  7889999999999998 569999999999999999999999999


Q ss_pred             eEEEEcccchhhhHHHHHHhccCCHHHHhchhhHHHhhhhcC-CCCccchhhhchHHHHHhhhhcC-----------CCE
Q 024523          152 ASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQ-----------SDF  219 (266)
Q Consensus       152 t~if~qSd~~~~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g-~~~i~~g~l~YPvLQAADIl~l~-----------adl  219 (266)
                      ++||+||+|.....  |++.+   +.++.|+.+++++.+.++ .+++++|+++||+|||||||+++           +|+
T Consensus       151 t~i~~~s~~~~~l~--~~~~~---~~~l~r~~t~~~~k~~~~~~~~~~~g~~~YP~lQaaDil~~~~d~~~~~~~~~~~l  225 (386)
T d1r6ta2         151 TFIFSDLDYMGMSS--GFYKN---VVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCL  225 (386)
T ss_dssp             EEEEEHHHHGGGCT--THHHH---HHHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCCCCEEE
T ss_pred             eEEEeCcHHHHHHH--HHHHH---HHHHHHhcchhHHHHhhccccCCcCcccccHHHHHHHHHHhcChhhhccccccccc
Confidence            99999999864433  33332   346778888888888777 68899999999999999999986           569


Q ss_pred             EEecCcchHHHHHHHHHHHHhhhhh
Q 024523          220 VPVGEDQKQHLELTRELAERVNYLY  244 (266)
Q Consensus       220 vpvG~DQ~~hleLaRdiA~r~n~~y  244 (266)
                      ||||+||+||++||||+|+|||+..
T Consensus       226 vpvG~DQ~~h~~ltRDia~r~~~~~  250 (386)
T d1r6ta2         226 IPCAIDQDPYFRMTRDVAPRIGYPK  250 (386)
T ss_dssp             EEEEGGGHHHHHHHHHHGGGGTCCC
T ss_pred             cccchhHHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999755

>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=4.9e-41  Score=307.61  Aligned_cols=176  Identities=26%  Similarity=0.358  Sum_probs=139.0

Q ss_pred             CCceEEEecCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeec-CCCHHHHHHHHHHHHHHHHHcCcCCCceEE
Q 024523           77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSKASV  154 (266)
Q Consensus        77 ~~~~iytGi~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~-~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~i  154 (266)
                      +++++|+|++|||++|||||++ +.+|++||+ |++++|+|||+||+++ +.+++++++++++++++|+|+|+||   ++
T Consensus        27 ~~~~~y~G~~PTG~lHlGh~v~-~~~~~~lq~~g~~~~~~IaD~~a~~~~~~~~~~~~~~~~~~~~~~~a~G~~~---~~  102 (306)
T d1j1ua_          27 DEKSAYIGFEPSGKIHLGHYLQ-IKKMIDLQNAGFDIIILLADLHAYLNQKGELDEIRKIGDYNKKVFEAMGLKA---KY  102 (306)
T ss_dssp             SSEEEEEEECCCSSCBHHHHHH-HHHHHHHHHTTEEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTCCC---EE
T ss_pred             CCCeEEEeECCCCcchHHHHHH-HHHHHHHHHCCCcEEEEeccHHHHhhhccchhhhhhhhhHHHHHHHhhhccc---cc
Confidence            4578999999999999999995 679999999 8999999999999998 5688999999999999999999998   46


Q ss_pred             EEcccchh---hhHHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEEEecCcchHHHH
Q 024523          155 FVQSHVRA---HVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLE  231 (266)
Q Consensus       155 f~qSd~~~---~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlvpvG~DQ~~hle  231 (266)
                      +++|++..   +....|.+++.++++++.+..++   ..+. .++.++|+|+||+||||||+++++|++|||.||++|++
T Consensus       103 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~r~-~~~~~~~~~~YP~lQaaDil~~~~~~~~~G~DQ~~~~~  178 (306)
T d1j1ua_         103 VYGSEFQLDKDYTLNVYRLALKTTLKRARRSMEL---IARE-DENPKVAEVIYPIMQVNDIHYLGVDVAVGGMEQRKIHM  178 (306)
T ss_dssp             EEGGGTTTSHHHHHHHHHHHHHSCHHHHHHHTTT---TSCC-CSSCCTHHHHHHHHHHHHHHHHTCSEEEEEGGGHHHHH
T ss_pred             cccchhhhhhhHHHhhhhhhhhhhhhhhhhhhhh---hhhh-hhccccccccccchhhcchhhcCcceeccchhhHHHHH
Confidence            67777644   44455567888888766655443   3333 37889999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhh------CCCcccccCCCCC-cee
Q 024523          232 LTRELAERVNYLY------GGRKWKKLGGRGG-AIF  260 (266)
Q Consensus       232 LaRdiA~r~n~~y------g~~~~~k~g~~~~-~if  260 (266)
                      ++||++++.....      |.+-.+||+|+.+ +||
T Consensus       179 l~rdl~~~~~~~~~~~~l~gldG~~KMSKS~~n~I~  214 (306)
T d1j1ua_         179 LARELLPKKVVCIHNPVLTGLDGEGKMSSSKGNFIA  214 (306)
T ss_dssp             HHHHHSSSCCEEEEECCCCCTTCCC-------CSCB
T ss_pred             HhhhcccccceecccccccCcccccccccccccccc
Confidence            9999998754322      2211369999888 665

>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.9e-39  Score=300.02  Aligned_cols=183  Identities=19%  Similarity=0.154  Sum_probs=138.5

Q ss_pred             CCCceEEEecCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCH------HHHHHHHHHHHHHHHH---
Q 024523           76 SVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT------QQLSKATRETAAIYLA---  144 (266)
Q Consensus        76 ~~~~~iytGi~PTG~-lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~------e~ir~~~~~~~~~~lA---  144 (266)
                      ++++++|+|++|||+ ||||||+|++ +|++||+ |++++++|||+||+++..+.      ....+.+.++.+.+++   
T Consensus        31 g~~~~vY~G~~PTg~sLHlGh~v~~~-~~~~lq~~g~~~~~~iad~~a~~~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~  109 (343)
T d1h3fa1          31 GRPLTVKLGADPTRPDLHLGHAVVLR-KMRQFQELGHKVVLIIGDFTGMIGDPSGRSKTRPPLTLEETRENAKTYVAQAG  109 (343)
T ss_dssp             CSCCEEEEEECTTCCSCBHHHHHHHH-HHHHHHHTTCEEEEEECCCC---------------------HHHHHHHHHHHT
T ss_pred             CCCCEEEEeecCCCCcccHHHHHHHH-HHHHHHHCCCceEEEEechhhhhhcccchhhhhhhhhHHHHHHHHHHHHHHHh
Confidence            468999999999995 9999999975 8889999 89999999999999984211      1122333344444333   


Q ss_pred             --cCcCCCceEEEEcccchhhhHHHHH--HhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhcCCCEE
Q 024523          145 --CGIDNSKASVFVQSHVRAHVELMWL--LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFV  220 (266)
Q Consensus       145 --~GlDp~Kt~if~qSd~~~~~eL~w~--Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l~adlv  220 (266)
                        .+.++++++|+.+++|.....+.|.  +++.++++++.+..+++.+...  ...+++|+|+||+||||||+++++|+|
T Consensus       110 ~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~f~YP~lQaaDi~~l~~~~v  187 (343)
T d1h3fa1         110 KILRQEPHLFELRYNSEWLEGLTFKEVVRLTSLMTVAQMLEREDFKKRYEA--GIPISLHELLYPFAQAYDSVAIRADVE  187 (343)
T ss_dssp             TTSCCCTTTEEEEETHHHHTTCBHHHHHHHHTTSBHHHHTTSHHHHHHHHT--TCCCBGGGGTHHHHHHHHHHHHTCSEE
T ss_pred             hhhcccccchhheechHHHhhhhHHHHHHhcccceecchhhhhhhhhcccc--cccccchhhhhHHHHhhhhhhhccccc
Confidence              2345678899999998765444443  4788999998888887655443  367899999999999999999999999


Q ss_pred             EecCcchHHHHHHHHHHHHhhhhhCCCc---------c-cccCCCCC-ceec
Q 024523          221 PVGEDQKQHLELTRELAERVNYLYGGRK---------W-KKLGGRGG-AIFK  261 (266)
Q Consensus       221 pvG~DQ~~hleLaRdiA~r~n~~yg~~~---------~-~k~g~~~~-~if~  261 (266)
                      |||.||++|++++||+|+|||++++...         | +||+||.+ +||-
T Consensus       188 p~G~DQ~~~i~l~Rdla~r~~~~~~~~~~~p~L~gldG~~KMSKS~~naI~L  239 (343)
T d1h3fa1         188 MGGTDQRFNLLVGREVQRAYGQSPQVCFLMPLLVGLDGREKMSKSLDNYIGL  239 (343)
T ss_dssp             EEEGGGHHHHHHHHHHHHHTTCCCCEEEEECCCBCTTSSSBCCGGGTCCCBT
T ss_pred             ccccchHHHHHHHHHHHhhcCccccceeeccccccccccchhhcccccceee
Confidence            9999999999999999999999886332         5 69999888 7763

>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.96  E-value=7.7e-30  Score=236.05  Aligned_cols=183  Identities=16%  Similarity=0.189  Sum_probs=148.1

Q ss_pred             CCCceEEEecCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEecceeeec-C---------CCHHHHHHHHHHHHHHHH
Q 024523           76 SVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P---------YDTQQLSKATRETAAIYL  143 (266)
Q Consensus        76 ~~~~~iytGi~PTG~-lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~-~---------~~~e~ir~~~~~~~~~~l  143 (266)
                      .+++++|+||+|||+ +||||+++++ ++++||+ ||+++++|+|+|++++ |         .+.+++++|...+.+++.
T Consensus        29 ~~~~~~Y~G~DPTa~sLHlGhlv~l~-~l~~~q~~Gh~~i~LiG~~T~~iGDPsgk~~~R~~l~~~~i~~n~~~~~~~~~  107 (323)
T d1jila_          29 KEQVTLYCGADPTADSLHIGHLLPFL-TLRRFQEHGHRPIVLIGGGTGMIGDPSGKSEERVLQTEEQVDKNIEGISKQMH  107 (323)
T ss_dssp             HSCCEEEEEECCSSSSCBHHHHHHHH-HHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEcccCCCccccHHHHHHHH-HHHHHHHhCCceEEeehhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhhh
Confidence            457899999999999 9999999875 8888999 9999999999999998 4         256788888877777665


Q ss_pred             HcC-c-CCCceEEEEcccchh---hhHHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhh----
Q 024523          144 ACG-I-DNSKASVFVQSHVRA---HVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILL----  214 (266)
Q Consensus       144 A~G-l-Dp~Kt~if~qSd~~~---~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~----  214 (266)
                      ... + ++++++|+.+++|..   +.+..-.++..++++++.+.-.++.   +.. ..+++++|+||+||++|+++    
T Consensus       108 ~~~~~~~~~~~~i~~n~~w~~~~~~~~~l~~~~~~~~v~~ml~~d~~~~---R~~-~~is~~Ef~YpllQ~~Df~~l~~~  183 (323)
T d1jila_         108 NIFEFGTDHGAVLVNNRDWLGQISLISFLRDYGKHVGVNYMLGKDSIQS---RLE-HGISYTEFTYTILQAIDFGHLNRE  183 (323)
T ss_dssp             HHSCCSSSSSCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHHTCGGGHH---HHT-TTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccccceEEechhhhhccchHHHHHHHHhhhhhhhHHHHhHHHHH---Hhc-ccccHhhHHHHHHHHHHHHHHHHH
Confidence            542 2 467899999999854   2333334688899998877766654   333 67999999999999999987    


Q ss_pred             cCCCEEEecCcchHHHHHHHHHHHHh-hh--hhCCCc-------ccccCCCCC-ceeccC
Q 024523          215 YQSDFVPVGEDQKQHLELTRELAERV-NY--LYGGRK-------WKKLGGRGG-AIFKVD  263 (266)
Q Consensus       215 l~adlvpvG~DQ~~hleLaRdiA~r~-n~--~yg~~~-------~~k~g~~~~-~if~~p  263 (266)
                      +++|++.||.||++++.++||+++|+ +.  .||...       |+||||+.+ +|+-.+
T Consensus       184 ~~~~iqiGGsDQ~~Ni~~Grdl~~~~~~~~~~~~it~pLl~~~~G~Km~KS~~n~i~l~~  243 (323)
T d1jila_         184 LNCKIQVGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDGKKFGKSESGAVWLDA  243 (323)
T ss_dssp             HCEEEEEEEGGGHHHHHHHHHHHHHHHCCCCCEEEEECCCBCTTSCBTTBCSSSBCBSST
T ss_pred             hhchhhhhccccHHHhhhhhhhhhhhcccccceEEecccccchhhhhhhhcCCCCeeeec
Confidence            69999999999999999999999997 32  344332       799999998 887654

>d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=99.96  E-value=8.1e-29  Score=228.84  Aligned_cols=184  Identities=13%  Similarity=0.182  Sum_probs=148.8

Q ss_pred             CCCceEEEecCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEecceeeec-C---------CCHHHHHHHHHHHHHHH-
Q 024523           76 SVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P---------YDTQQLSKATRETAAIY-  142 (266)
Q Consensus        76 ~~~~~iytGi~PTG~-lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~-~---------~~~e~ir~~~~~~~~~~-  142 (266)
                      .+++++|+||+||++ +||||+++++ ++.+||+ ||+++++|+|.|++++ |         .+.+.+++|+..+..++ 
T Consensus        28 ~~~~~~Y~G~DPTa~sLHlGhlv~l~-~l~~~q~~Gh~~i~LiG~~T~~IGDPsgk~~eR~~l~~e~i~~n~~~~~~q~~  106 (319)
T d2ts1a_          28 EERVTLYCGFDPTADSLHIGHLATIL-TMRRFQQAGHRPIALVGGATGLIGDPSGKKSERTLNAKETVEAWSARIKEQLG  106 (319)
T ss_dssp             HSCCEEEEEECCSSSSCBGGGHHHHH-HHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHT
T ss_pred             CCCceEEEeecCCCCcchHHHHHHHH-HHHHHHHcCCceeEEeeehhhccCCCcccchhhhcCCHHHHHHHHHHHHHHHH
Confidence            467899999999998 9999999876 7778999 9999999999999998 4         24677777776655554 


Q ss_pred             --HHcCcCCCceEEEEcccchh---hhHHHHHHhccCCHHHHhchhhHHHhhhhcCCCCccchhhhchHHHHHhhhhc--
Q 024523          143 --LACGIDNSKASVFVQSHVRA---HVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY--  215 (266)
Q Consensus       143 --lA~GlDp~Kt~if~qSd~~~---~~eL~w~Ls~~~tv~rL~R~~~~ke~~~~~g~~~i~~g~l~YPvLQAADIl~l--  215 (266)
                        +..+.++++++|+.|++|..   +.+..-.++..++++++.+.-.++.   ++. ..+++++|+||+||++|.+++  
T Consensus       107 ~~~~~~~~~~~~~iv~N~~w~~~~~~~~~l~~~g~~~tv~~ml~rd~v~~---R~~-~~is~~Ef~Y~llQayDf~~l~~  182 (319)
T d2ts1a_         107 RFLDFEADGNPAKIKNNYDWIGPLDVITFLRDVGKHFSVNYMMAKESVQS---RIE-TGISFTEFSYMMLQAYDFLRLYE  182 (319)
T ss_dssp             TSSCSSCSSSCCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHHTSHHHHT---TTT-TCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhcccccccccceeehHHHHhhHHHHHHHHHHccccchhhhhhhHHHHH---hcc-cCcchhhhHHHHHHHHHHHHHhh
Confidence              44566788999999999854   2333333688899998766655543   333 679999999999999999998  


Q ss_pred             --CCCEEEecCcchHHHHHHHHHHHHhh---hhhCCCc-------ccccCCCCC-ceeccCC
Q 024523          216 --QSDFVPVGEDQKQHLELTRELAERVN---YLYGGRK-------WKKLGGRGG-AIFKVDS  264 (266)
Q Consensus       216 --~adlvpvG~DQ~~hleLaRdiA~r~n---~~yg~~~-------~~k~g~~~~-~if~~p~  264 (266)
                        +++++.+|.||+.++..+||+.++++   ..||.+.       |+||||+++ +||-.|+
T Consensus       183 ~~~~~~qiGGsDQ~gNi~~G~dli~~~~~~~~~~~lT~PLL~~~~G~K~~ks~~n~i~l~~~  244 (319)
T d2ts1a_         183 TEGCRLQIGGSDQWGNITAGLELIRKTKGEARAFGLTIPLVTKADGTKFGKTESGTIWLDKE  244 (319)
T ss_dssp             HHCEEEEEEEGGGHHHHHHHHHHHHHHHC--CCEEEEECCCCCTTSCCTTCCSSCCCBSSTT
T ss_pred             ccCCchhhccchhhhHHHHHHHHHHHhcccccceEeecccccccccceeeecCCCCcccccc
Confidence              89999999999999999999998873   3555443       799999987 8886554

>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Cysteinyl-tRNA synthetase (CysRS)
species: Escherichia coli [TaxId: 562]

Probab=96.59  E-value=0.0031  Score=54.50  Aligned_cols=74  Identities=9%  Similarity=-0.003  Sum_probs=48.4

Q ss_pred             CCCceEEE-ecCCCCcchhhhHHHHH--HHHHHHhc--cCcEEE-EEecceeeec-------CCCHH-HHHHHHHHHHHH
Q 024523           76 SVKKRIVS-GVQPTGSIHLGNYLGAI--KNWIALQN--SYETLF-FIVDLHAITL-------PYDTQ-QLSKATRETAAI  141 (266)
Q Consensus        76 ~~~~~iyt-Gi~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~i-lIADlhA~~~-------~~~~e-~ir~~~~~~~~~  141 (266)
                      +.+..||+ |.=|+|++||||.-+++  .-+.++++  |++|++ .-.|.|.--.       ..+++ .+.+...+..++
T Consensus        20 ~~~~~~yv~Gptv~g~~HIGH~R~av~gD~laR~lr~~G~~V~~~~~~dd~G~~i~~~a~~~~~~~~e~~~~~~~~~~~~   99 (315)
T d1li5a2          20 AGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKD   99 (315)
T ss_dssp             TTEEEEEECCCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEecCCcCCCCcccchhHHHHHHHHHHHHHHHcCCcEEEEecccchhHHHHHHHhhhhhccccccccchhhhhhh
Confidence            33455555 87778999999998877  44667776  899865 4566665421       12343 344555677778


Q ss_pred             HHHcCcCC
Q 024523          142 YLACGIDN  149 (266)
Q Consensus       142 ~lA~GlDp  149 (266)
                      +.+.++..
T Consensus       100 ~~~~~i~~  107 (315)
T d1li5a2         100 FDALNILR  107 (315)
T ss_dssp             HHHTTCCC
T ss_pred             HHhcCCCC
Confidence            88887753

>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Glutamyl-Q tRNA-Asp synthetase YadB
species: Escherichia coli [TaxId: 562]

Probab=96.47  E-value=0.0016  Score=56.66  Aligned_cols=165  Identities=13%  Similarity=0.077  Sum_probs=86.9

Q ss_pred             CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcccc-hhh
Q 024523           86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHV-RAH  163 (266)
Q Consensus        86 ~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~Kt~if~qSd~-~~~  163 (266)
                      .|||.|||||...++-+|..-.. +.++++=|=| +--.     ....+..+.+.+++..+|++.+. .++.||+- ..|
T Consensus        10 sPtG~lHiG~~rtal~n~~~Ak~~~G~~iLRieD-tD~~-----R~~~~~~~~I~~dL~wlgl~~d~-~~~~QS~r~~~Y   82 (286)
T d1nzja_          10 SPSGELHFGSLIAALGSYLQARARQGRWLVRIED-IDPP-----REVPGAAETILRQLEHYGLHWDG-DVLWQSQRHDAY   82 (286)
T ss_dssp             CTTSCCCHHHHHHHHHHHHHHHHTTCEEEEEECC-SCGG-----GSCTTHHHHHHHHHHHTTCCCSS-CCEEGGGCHHHH
T ss_pred             CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCC-CCCC-----cCCHHHHHHHHHHHHHhhhcccc-ccchhHHHHHHH
Confidence            47899999999988878754444 4444443333 3111     11224666778888889998773 57889984 334


Q ss_pred             hHHHHH-------HhccCCHHHHhchhhHHHhhhh-cC--CCCcc-----------------------ch-hh-------
Q 024523          164 VELMWL-------LSSATPIGWLNKMIQFKEKSHK-AG--GENVG-----------------------VA-LL-------  202 (266)
Q Consensus       164 ~eL~w~-------Ls~~~tv~rL~R~~~~ke~~~~-~g--~~~i~-----------------------~g-~l-------  202 (266)
                      .+..-.       +-|.+|-.+++..-........ ..  .....                       .. .+       
T Consensus        83 ~~~~~~L~~~g~aY~C~ct~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~R  162 (286)
T d1nzja_          83 REALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGIIHADEKLAREDFIIHR  162 (286)
T ss_dssp             HHHHHHHHHTTCEEEECCCHHHHHHTTSSCCCTTTTTCCCSTTCEEEECCSSCCCEEEETTTEEEECCHHHHHSCCEEEC
T ss_pred             HHHHHHHHHcCCcccccccHHHHHhhccccccccccccchhhhhhhhhcccccccceeeeeeeeeeeccccccccccccC
Confidence            333222       3667776666443211000000 00  00000                       00 00       


Q ss_pred             --hchHHHHH---hhhhcCCCEEEecCcchHHHHHHHHHHHHhhhhh---CC------CcccccCCCCC
Q 024523          203 --TYPVLMAS---DILLYQSDFVPVGEDQKQHLELTRELAERVNYLY---GG------RKWKKLGGRGG  257 (266)
Q Consensus       203 --~YPvLQAA---DIl~l~adlvpvG~DQ~~hleLaRdiA~r~n~~y---g~------~~~~k~g~~~~  257 (266)
                        .||..+=|   |=...+.++|.-|.|...+-..-+.|.+.+|...   ..      ..|+||-||.+
T Consensus       163 ~dg~ptY~lA~vVDD~~~gIThViRG~D~l~st~~Q~~L~~~lg~~~P~y~H~pli~~~~g~KLSKr~~  231 (286)
T d1nzja_         163 RDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFGWKVPDYIHLPLALNPQGAKLSKQNH  231 (286)
T ss_dssp             TTSCBCHHHHHHHHHHHTTCCEEEEEGGGHHHHHHHHHHHHHHTCCCCEEEEECBCCC-----------
T ss_pred             CCCCeeeeehhhhcccccccceecccccccchHHHHHHHHHhhCCCccceeecceEEccCCcccccccC
Confidence              12333333   2233589999999999998888888889888643   10      11677877766

>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Glutaminyl-tRNA synthetase (GlnRS)
species: Escherichia coli [TaxId: 562]

Probab=96.32  E-value=0.0032  Score=55.97  Aligned_cols=93  Identities=12%  Similarity=-0.002  Sum_probs=57.5

Q ss_pred             eEEEecCC--CCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHH-HHHHHHHHHHHHHHcCcCCCceEEE
Q 024523           80 RIVSGVQP--TGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQ-LSKATRETAAIYLACGIDNSKASVF  155 (266)
Q Consensus        80 ~iytGi~P--TG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~-ir~~~~~~~~~~lA~GlDp~Kt~if  155 (266)
                      .|.|=|.|  ||.|||||...++-+|..-.+ |..+++=|=| +      |+++ ..+....+..++.-+||+.+. .++
T Consensus        19 ~v~tRFAPSPTG~LHiG~~rtal~n~l~Ak~~~G~fiLRIED-t------D~~R~~~~~~~~I~~dL~WLGl~wD~-~~~   90 (331)
T d1gtra2          19 TVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDD-T------NPVKEDIEYVESIKNDVEWLGFHWSG-NVR   90 (331)
T ss_dssp             SCEEEECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEEEECC-C------CGGGCCHHHHHHHHHHHHHTTCCCSS-SCE
T ss_pred             eEEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCc-C------CCCcccchHHHHHHHHHHHHhccccc-cce
Confidence            44555554  599999999998877764444 5555444444 3      2222 334556677888889999763 466


Q ss_pred             Ecccchh-hhHHHHH-------HhccCCHHHHh
Q 024523          156 VQSHVRA-HVELMWL-------LSSATPIGWLN  180 (266)
Q Consensus       156 ~qSd~~~-~~eL~w~-------Ls~~~tv~rL~  180 (266)
                      +||+-.+ |.+....       +-|.+|-.+++
T Consensus        91 ~QS~r~~~Y~~~~~~L~~~G~aY~C~cs~eel~  123 (331)
T d1gtra2          91 YSSDYFDQLHAYAIELINKGLAYVDELTPEQIR  123 (331)
T ss_dssp             EGGGGHHHHHHHHHHHHHTTSEEEECCCHHHHH
T ss_pred             ecchHHHHHHHHHHhhhhcCCcccccccHHHHH
Confidence            7998533 3222221       47777766664

>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Methionyl-tRNA synthetase (MetRS)
species: Escherichia coli [TaxId: 562]

Probab=96.20  E-value=0.0051  Score=53.22  Aligned_cols=74  Identities=26%  Similarity=0.389  Sum_probs=47.3

Q ss_pred             CCceEEEec-CCCCcchhhhHHHHH--HHHHHHhc--cCcEEEE-Eecceee--ec-----CCCH-HHHHHHHHHHHHHH
Q 024523           77 VKKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFF-IVDLHAI--TL-----PYDT-QQLSKATRETAAIY  142 (266)
Q Consensus        77 ~~~~iytGi-~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~il-IADlhA~--~~-----~~~~-e~ir~~~~~~~~~~  142 (266)
                      +++.|-+++ -|+|++||||..+++  .-+.++++  |++|.+. -.|.|..  +.     ..++ +..++....+.+++
T Consensus         2 ~~~~i~~~~P~~nG~lHiGHar~~v~~D~l~R~lr~~G~~V~~v~~~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~~~~   81 (350)
T d1pfva2           2 KKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDF   81 (350)
T ss_dssp             CEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred             CeEEEeCCCCCCCCCccccccHHHHHHHHHHHHHHhcCCceEecCccCCccHHHHHHHHHcCCCHHHHHHhHHHHHHHHH
Confidence            345556665 566999999988766  33445555  8998554 4565542  11     1244 34456667788888


Q ss_pred             HHcCcCCC
Q 024523          143 LACGIDNS  150 (266)
Q Consensus       143 lA~GlDp~  150 (266)
                      .++++|.+
T Consensus        82 ~~l~i~~~   89 (350)
T d1pfva2          82 AGFNISYD   89 (350)
T ss_dssp             HHTTCCCS
T ss_pred             HHcCCCcc
Confidence            89999865

>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Glutamyl-tRNA synthetase (GluRS)
species: Thermus thermophilus [TaxId: 274]

Probab=96.07  E-value=0.004  Score=54.46  Aligned_cols=165  Identities=15%  Similarity=0.057  Sum_probs=94.5

Q ss_pred             CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHcCcCCCc-------eEEEEc
Q 024523           86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSK-------ASVFVQ  157 (266)
Q Consensus        86 ~PTG~lHLGh~ig~i~k~~~LQ~-g~~v~ilIADlhA~~~~~~~e~ir~~~~~~~~~~lA~GlDp~K-------t~if~q  157 (266)
                      .|||.|||||...++-+|..-+. +.++++=| |++--..     ...+....+.+++..+|+++|.       ..++.|
T Consensus         9 sPtG~lHiG~~rtal~n~~~Ak~~~G~~iLRi-dDtD~~R-----~~~~~~~~I~~dL~wLgi~wD~~p~~~~~~~~~~q   82 (305)
T d1j09a2           9 SPTGDPHVGTAYIALFNYAWARRNGGRFIVRI-EDTDRAR-----YVPGAEERILAALKWLGLSYDEGPDVGGPHGPYRQ   82 (305)
T ss_dssp             CCSSSCBHHHHHHHHHHHHHHHHTTCEEEECB-CCCCTTS-----CCTTHHHHHHHHHHHTTCCCSBBTTTBCTTCCCBG
T ss_pred             CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEe-CcCCCcc-----CchHHHHHHHHHHHHHhcCcccCCcCCCCCcceee
Confidence            47799999999988877754443 45544434 3332111     1223556777788889998763       368899


Q ss_pred             ccchh-hhHHHHH-------HhccCCHHHHhchhh-------------H---HHhhhh-------cC---CCCcc-----
Q 024523          158 SHVRA-HVELMWL-------LSSATPIGWLNKMIQ-------------F---KEKSHK-------AG---GENVG-----  198 (266)
Q Consensus       158 Sd~~~-~~eL~w~-------Ls~~~tv~rL~R~~~-------------~---ke~~~~-------~g---~~~i~-----  198 (266)
                      |+..+ |.+..-.       +-|.++-.+++..-.             .   .+....       +.   .+...     
T Consensus        83 S~r~~~y~~~~~~Li~~g~aY~C~cs~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~k~~~~~~~~~~d~i  162 (305)
T d1j09a2          83 SERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKGGYDGRARNIPPEEAEERARRGEPHVIRLKVPRPGTTEVKDEL  162 (305)
T ss_dssp             GGCHHHHHHHHHHHHHHTSEEEECCCHHHHHHHHHHHSSCCCGGGGSCHHHHHHHHHTTCCCEEEECCCSSCEEEEEETT
T ss_pred             ecchhHHHHHHHHHHHcCCeeeccccchhhhhhhhhccCCCCccccchhhhHHHHhhcCCcceEEEeccccCCccccchh
Confidence            98532 3333222       356777766543210             0   000000       00   00000     


Q ss_pred             ----------c---------hhhhchHHHHHhhhhcCCCEEEecCcchHHHHHHHHHHHHhhhhhCCCc----------c
Q 024523          199 ----------V---------ALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRK----------W  249 (266)
Q Consensus       199 ----------~---------g~l~YPvLQAADIl~l~adlvpvG~DQ~~hleLaRdiA~r~n~~yg~~~----------~  249 (266)
                                +         |..+|=+--+.|=...+.++|.-|.|-..+-..-+-+.+.++...- .+          +
T Consensus       163 ~~~~~~~~~~~~D~vi~r~dg~p~Y~~A~vvDD~~~githviRG~Dl~~~t~~q~~l~~~Lg~~~p-~~~h~~l~~~~~g  241 (305)
T d1j09a2         163 RGVVVYDNQEIPDVVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAP-RFYHMPLLRNPDK  241 (305)
T ss_dssp             TEEEEEEGGGSCCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHTCCCC-EEEEECCCBCTTS
T ss_pred             hceeeeccccCCCeEEECCCCCeehHHHHHHHHHHccCccccccccceeccHHHHHHHHhhcCCCC-ceeeecccccCcc
Confidence                      0         2233333333344467899999999999988877888888875432 11          6


Q ss_pred             cccCCCCC
Q 024523          250 KKLGGRGG  257 (266)
Q Consensus       250 ~k~g~~~~  257 (266)
                      +||.||.+
T Consensus       242 ~KLSKr~~  249 (305)
T d1j09a2         242 TKISKRKS  249 (305)
T ss_dssp             CBCCTTTS
T ss_pred             ccccccCC
Confidence            88888776

>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Class I lysyl-tRNA synthetase
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.90  E-value=0.004  Score=51.27  Aligned_cols=47  Identities=23%  Similarity=0.273  Sum_probs=32.4

Q ss_pred             CCCceEEEecCCCCcchhhhHHHHH--HHHHHHhc--cCcEE-EEEecceee
Q 024523           76 SVKKRIVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETL-FFIVDLHAI  122 (266)
Q Consensus        76 ~~~~~iytGi~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~-ilIADlhA~  122 (266)
                      +++..+-+|.-|||++||||+-.++  .-+.++.+  |++|. +...|.|..
T Consensus        17 k~~~v~~~~~~PnG~lHIGHlr~~i~gD~laR~lr~~G~~V~~~~~~dd~g~   68 (317)
T d1irxa2          17 KEKYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDR   68 (317)
T ss_dssp             CSEEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSB
T ss_pred             CCeEEEECCCCCCCCccccccHHHHHHHHHHHHHHHcCCCEEEEEEeccCcc
Confidence            3456777899999999999987665  23445444  88874 445555544

>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Methionyl-tRNA synthetase (MetRS)
species: Thermus thermophilus [TaxId: 274]

Probab=95.79  E-value=0.0071  Score=51.71  Aligned_cols=64  Identities=17%  Similarity=0.194  Sum_probs=39.9

Q ss_pred             CCCcchhhhHHHHH--HHHHHHhc--cCcEEEE-Eecceee--ec-----CCCH-HHHHHHHHHHHHHHHHcCcCCC
Q 024523           87 PTGSIHLGNYLGAI--KNWIALQN--SYETLFF-IVDLHAI--TL-----PYDT-QQLSKATRETAAIYLACGIDNS  150 (266)
Q Consensus        87 PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~il-IADlhA~--~~-----~~~~-e~ir~~~~~~~~~~lA~GlDp~  150 (266)
                      |||+|||||.-+++  .-+.++.+  |++|++. -.|.|..  ..     ..++ +.+.++..++...+.+.|++++
T Consensus        14 pnG~lHiGH~r~~v~~D~l~R~lr~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~   90 (348)
T d2d5ba2          14 VNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWDLLGIAYD   90 (348)
T ss_dssp             TTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTCCCS
T ss_pred             CCCCcccccCHHHHHHHHHHHHHHhcCCCeEecCcCCCCCHHHHHHHHHcCCCHHHhhhhHHHHHHHHHHhcCcccc
Confidence            78999999987765  33555555  8998554 4455431  00     0233 3445556666677777888765

>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Valyl-tRNA synthetase (ValRS)
species: Thermus thermophilus [TaxId: 274]

Probab=95.28  E-value=0.019  Score=50.87  Aligned_cols=83  Identities=14%  Similarity=0.111  Sum_probs=48.1

Q ss_pred             CCceEEEe--cCCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-cceeeec----------CC-CH----------
Q 024523           77 VKKRIVSG--VQPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAITL----------PY-DT----------  128 (266)
Q Consensus        77 ~~~~iytG--i~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~ilIA-DlhA~~~----------~~-~~----------  128 (266)
                      ++..+++.  --|+|+|||||..+.+  .-+.+++.  |++|++..+ |.|....          +. .+          
T Consensus        33 ~~~f~i~~~pPy~NG~lHlGH~~~yv~~Dv~~Ry~r~~G~~V~~v~g~D~hG~~i~~~aek~~~~~~~~~~~~~~~~~~~  112 (425)
T d1ivsa4          33 KPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLE  112 (425)
T ss_dssp             SCEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHHHHHTTTCCGGGSTTTHHHH
T ss_pred             CCcEEEEcCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCceeecCcccCCcchHHHHHHHhhcccCCChHHhcHHHHHH
Confidence            34444454  4566999999998876  33666666  899876644 5554311          00 00          


Q ss_pred             ---HHHHHHHHHHHHHHHHcCcCCCceEEEEccc
Q 024523          129 ---QQLSKATRETAAIYLACGIDNSKASVFVQSH  159 (266)
Q Consensus       129 ---e~ir~~~~~~~~~~lA~GlDp~Kt~if~qSd  159 (266)
                         ....+++..+..++.++|+..+....+.-++
T Consensus       113 ~~~~~~~~~~~~~~~~~~~lg~~~d~~~~~~t~~  146 (425)
T d1ivsa4         113 RVWQWKEESGGTILKQLKRLGASADWSREAFTMD  146 (425)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTS
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCccCcchhhcccc
Confidence               1123344556667778898766544444443

>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Methionyl-tRNA synthetase (MetRS)
species: Pyrococcus abyssi [TaxId: 29292]

Probab=92.99  E-value=0.089  Score=44.72  Aligned_cols=65  Identities=15%  Similarity=0.299  Sum_probs=37.1

Q ss_pred             CCCCcchhhhHHH-HH--HHHHHHhc--cCcEEEEEe-ccee--eec-----CCCHHH-HHHHHHHHHHHHHHcCcCCC
Q 024523           86 QPTGSIHLGNYLG-AI--KNWIALQN--SYETLFFIV-DLHA--ITL-----PYDTQQ-LSKATRETAAIYLACGIDNS  150 (266)
Q Consensus        86 ~PTG~lHLGh~ig-~i--~k~~~LQ~--g~~v~ilIA-DlhA--~~~-----~~~~e~-ir~~~~~~~~~~lA~GlDp~  150 (266)
                      -|||.+||||..+ ++  .-+.+++.  |++|++..+ |.|.  +..     ..++++ +..+.....+++.+.+++.+
T Consensus        12 ~p~G~lHiGH~~~~~i~~Dil~R~~r~~G~~V~~v~g~D~~g~~i~~~A~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (361)
T d1rqga2          12 YANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKITFQRAKISFD   90 (361)
T ss_dssp             BTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCCCS
T ss_pred             CCCCCcccccccccHHHHHHHHHHHHhcCCceEecCccCcccHHHHHHHHHcCCCHHHHHHHHHHhhcccccccccccc
Confidence            4789999999654 34  33445554  899876655 4331  111     124433 34445556666667776543

>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Leucyl-tRNA synthetase (LeuRS)
species: Thermus thermophilus [TaxId: 274]

Probab=92.77  E-value=0.056  Score=48.39  Aligned_cols=75  Identities=15%  Similarity=0.071  Sum_probs=47.5

Q ss_pred             CCceEEEec-CCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEecceeee-c-------CCCH-HHHHHHHHHHHHHH
Q 024523           77 VKKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIVDLHAIT-L-------PYDT-QQLSKATRETAAIY  142 (266)
Q Consensus        77 ~~~~iytGi-~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~ilIADlhA~~-~-------~~~~-e~ir~~~~~~~~~~  142 (266)
                      +++.|.+|. -+||.+||||.++.+  .-+.+++.  |++|++.-+-+|+=+ .       ..++ +-..+....+.+++
T Consensus        33 ~~~~i~~~pP~~nG~lHiGH~~~~~~~D~~~R~~rm~G~~v~~~~G~D~~G~~~e~~~~k~~~~~~~~~~~~~~~~~~~~  112 (494)
T d1h3na3          33 GKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESL  112 (494)
T ss_dssp             CEEEEEECCCCSSSCCBHHHHHHHHHHHHHHHHHHHTTCEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEeCCCCCCCchhhhHHHHHHHHHHHHHHHHccCCcccCcCCcCcchHHHHHHHHHhCCChHHHHHHHHHHhHHHH
Confidence            346777773 235899999998755  22555555  899887766555433 1       0233 33445566677788


Q ss_pred             HHcCcCCCc
Q 024523          143 LACGIDNSK  151 (266)
Q Consensus       143 lA~GlDp~K  151 (266)
                      ..+|+..+-
T Consensus       113 ~~~g~~~d~  121 (494)
T d1h3na3         113 RLMGILYDW  121 (494)
T ss_dssp             HHTTCCCCG
T ss_pred             HhcCcccCC
Confidence            888986553

>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Isoleucyl-tRNA synthetase (IleRS)
species: Thermus thermophilus [TaxId: 274]

Probab=92.11  E-value=0.029  Score=49.84  Aligned_cols=44  Identities=14%  Similarity=0.092  Sum_probs=29.5

Q ss_pred             CceEEE-ecCCCCcchhhhHHHHH--HHHHHHhc--cCcEEEE-Eeccee
Q 024523           78 KKRIVS-GVQPTGSIHLGNYLGAI--KNWIALQN--SYETLFF-IVDLHA  121 (266)
Q Consensus        78 ~~~iyt-Gi~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~il-IADlhA  121 (266)
                      +++|.+ -=-|+|.+||||..+.+  .-+.++|+  |++|++. =.|.|.
T Consensus        39 ~f~i~~~pPy~nG~lHiGH~~~~v~~Dv~~Ry~r~~G~~V~~v~G~D~hG   88 (452)
T d1ilea3          39 RYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHG   88 (452)
T ss_dssp             BCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCH
T ss_pred             CEEEecCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCCceeccCCcCCCC
Confidence            455554 33578999999988765  33666666  8998554 456664

>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Arginyl-tRNA synthetase (ArgRS)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.10  E-value=0.11  Score=45.67  Aligned_cols=45  Identities=13%  Similarity=0.243  Sum_probs=33.1

Q ss_pred             CCC--EEEecCcchHHHHHHHHHHHHhhhhhCCCc-------ccccCCCCCcee
Q 024523          216 QSD--FVPVGEDQKQHLELTRELAERVNYLYGGRK-------WKKLGGRGGAIF  260 (266)
Q Consensus       216 ~ad--lvpvG~DQ~~hleLaRdiA~r~n~~yg~~~-------~~k~g~~~~~if  260 (266)
                      ++|  +-.+|.||..|+.-...+++.+++......       -+||-+|.|.+.
T Consensus       228 ~~D~~I~V~g~dq~~~~~~l~~~l~~lg~~~~~~~~h~~~g~v~kMStR~G~~i  281 (348)
T d1f7ua2         228 HFDKMIYVIASQQDLHAAQFFEILKQMGFEWAKDLQHVNFGMVQGMSTRKGTVV  281 (348)
T ss_dssp             CCSEEEEECCGGGHHHHHHHHHHHHHTTCGGGGGEEEECCCCEESCCGGGTCCC
T ss_pred             CCCEEEEecccccchhhhhHHHHHHHhCCCcccceeeecCCccccccccCCCce
Confidence            455  558999999999999999999986543221       357878877543

>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Isoleucyl-tRNA synthetase (IleRS)
species: Staphylococcus aureus [TaxId: 1280]

Probab=83.44  E-value=0.18  Score=45.38  Aligned_cols=46  Identities=17%  Similarity=0.309  Sum_probs=30.4

Q ss_pred             CCceEEEec-CCCCcchhhhHHHHH--HHHHHHhc--cCcEEEE-Eecceee
Q 024523           77 VKKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFF-IVDLHAI  122 (266)
Q Consensus        77 ~~~~iytGi-~PTG~lHLGh~ig~i--~k~~~LQ~--g~~v~il-IADlhA~  122 (266)
                      +++.+..|. -|+|.|||||..+.+  .-+.+++.  |++|.+. =-|.|.+
T Consensus        48 ~~f~~~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~rm~G~~V~~~~G~D~~G~   99 (450)
T d1ffya3          48 ETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGL   99 (450)
T ss_dssp             CBCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSH
T ss_pred             CcEEEecCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCccccccccccCCc
Confidence            456777775 345999999988755  22455555  8888654 4566654

>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Arginyl-tRNA synthetase (ArgRS)
species: Thermus thermophilus [TaxId: 274]

Probab=83.08  E-value=0.25  Score=43.53  Aligned_cols=43  Identities=19%  Similarity=0.181  Sum_probs=28.7

Q ss_pred             CEEEecCcchHHHHHHHHHHHHhhhhh----------CCC--cccccCCCCCcee
Q 024523          218 DFVPVGEDQKQHLELTRELAERVNYLY----------GGR--KWKKLGGRGGAIF  260 (266)
Q Consensus       218 dlvpvG~DQ~~hleLaRdiA~r~n~~y----------g~~--~~~k~g~~~~~if  260 (266)
                      -+--+|.+|..|+.+...+++.+++.-          |.-  .++||-+|.|.+.
T Consensus       253 ~iyVvd~~Q~~h~~~v~~~~~~~g~~~~~~~~~hv~~g~v~~~g~kMStR~G~~v  307 (370)
T d1iq0a2         253 TINVVDVRQSHPQALVRAALALAGYPALAEKAHHLAYETVLLEGRQMSGRKGLAV  307 (370)
T ss_dssp             EEEEEESSSCCCHHHHHHHHHHTTCHHHHTTEEEEEECCEEETTBCSCC----CC
T ss_pred             HHHHHhccchHHHHHHHHHHHHhCCCchhhceeeEEEEEEecCCccccccCCCee
Confidence            355889999999999999999987531          211  1678999888544