Citrus Sinensis ID: 024529

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260------
Protein Sequence
MQSFIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQSR
Secondary Structure (PSIPRED)
cHHHHHHHcccccccHHHHHHHHHHHcccccccccccccEEEEcccccccccccEEEEEEEEEEcccccccEEccEEEEcccccEEEEccccccHHHHHHHHccccccccEEEEEccccEEEEEcccccccccccccHHHHHHHHcccccHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHcccccEEEEccccccccHHHHHHHHHHHHHcccEEEEEcccHHHHHHHccEEEEEEccEEEEEcccHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHcHHHHHHHHHHHHHHHHccccccccccccccEEcccccccccccEEEEEcEEEccccccEEEEEEEEEEccccEEEEEccccccHHHHHHHHHccccccccEEEEcccEEEEEEcccHHHHcccccHHHHHHHHHcccccHHHHHHHHHHccccHHHccccHHHccHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHEcccccEEEccccHHHHHHHHHcc
Coil and Loop (DISEMBL)
MQSFIDKFRYNAKRASLVQSRIKALERmghvdevvndpdykfefptpddrpgppiisfsdasfgypggpilfknlnfgidldsriamvgpngigkSTILKLIAgelqpssgtvfRSAKVRIAVFSQhhvdgldlssnpllymmrcfpgvpeqkLRAHlgsfgvtgnlalqpmytlsggqkSRVAFAKItfkkphiilldepsnhldlDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELwvvsegkatpfhgtFHDYKKMLQSR
Flexible Loop (DISEMBL)
mqsfidkfrynakraSLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGkatpfhgtfhdykkmlqsr
Low Complexity Region (SEG)
MQSFIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQSR
Disordered region (IsUnstruct)
*******FRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKF************IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY*******
Disordered Region (DISOPRED)
MQSFIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQS*
Disordered Region (DISEMBL)
MQSFIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQSR
Disordered Region (DISPRO)
MQSFIDKFRYNAKRA*********LERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQ**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQSFIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQSR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	266	2.2.26 [Sep-21-2011]
Q8H0V6	715	ABC transporter F family	yes	no	0.996	0.370	0.909	1e-146
P43535	752	Protein GCN20 OS=Saccharo	yes	no	0.992	0.351	0.481	1e-72
O59672	736	Uncharacterized ABC trans	yes	no	0.992	0.358	0.483	3e-67
Q8K268	709	ATP-binding cassette sub-	yes	no	0.868	0.325	0.447	6e-65
Q66H39	709	ATP-binding cassette sub-	yes	no	0.868	0.325	0.447	9e-65
Q9NUQ8	709	ATP-binding cassette sub-	yes	no	0.868	0.325	0.443	3e-64
Q5R9Z5	709	ATP-binding cassette sub-	yes	no	0.868	0.325	0.443	4e-64
Q8T6B4	1142	ABC transporter F family	no	no	0.969	0.225	0.459	5e-64
Q9FJH6	595	ABC transporter F family	no	no	0.996	0.445	0.440	9e-63
Q99LE6	628	ATP-binding cassette sub-	no	no	0.996	0.421	0.415	2e-54

>sp|Q8H0V6|AB3F_ARATH ABC transporter F family member 3 OS=Arabidopsis thaliana GN=ABCF3 PE=2 SV=1

 Score =  518 bits (1334), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 241/265 (90%), Positives = 260/265 (98%)

Query: 1   MQSFIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSD 60
           MQ+FIDKFRYNAKRASLVQSRIKAL+R+ HVD+V+NDPDYKFEFPTPDD+PGPPIISFSD
Sbjct: 449 MQAFIDKFRYNAKRASLVQSRIKALDRLAHVDQVINDPDYKFEFPTPDDKPGPPIISFSD 508

Query: 61  ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR 120
           ASFGYPGGP+LF+NLNFGIDLDSRIAMVGPNGIGKSTILKLI+G+LQPSSGTVFRSAKVR
Sbjct: 509 ASFGYPGGPLLFRNLNFGIDLDSRIAMVGPNGIGKSTILKLISGDLQPSSGTVFRSAKVR 568

Query: 121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQK 180
           +AVFSQHHVDGLDLSSNPLLYMMRC+PGVPEQKLR+HLGS GVTGNLALQPMYTLSGGQK
Sbjct: 569 VAVFSQHHVDGLDLSSNPLLYMMRCYPGVPEQKLRSHLGSLGVTGNLALQPMYTLSGGQK 628

Query: 181 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEE 240
           SRVAFAKITFKKPH++LLDEPSNHLDLDAVEALIQGLVLFQGGI MVSHDEHLISGSV+E
Sbjct: 629 SRVAFAKITFKKPHLLLLDEPSNHLDLDAVEALIQGLVLFQGGICMVSHDEHLISGSVDE 688

Query: 241 LWVVSEGKATPFHGTFHDYKKMLQS 265
           LWVVS+G+  PFHGTFHDYKK+LQS
Sbjct: 689 LWVVSDGRIAPFHGTFHDYKKLLQS 713

Arabidopsis thaliana (taxid: 3702)

>sp|P43535|GCN20_YEAST Protein GCN20 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GCN20 PE=1 SV=1

 Score =  273 bits (697), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 128/266 (48%), Positives = 180/266 (67%), Gaps = 2/266 (0%)

Query: 1   MQSFIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSD 60
           +Q FIDK+RYNA ++   QSRIK LE++  ++    D    F+FP  D +  PPII   D
Sbjct: 478 LQEFIDKYRYNAAKSQEAQSRIKKLEKLPVLEPPEQDKTIDFKFPECD-KLSPPIIQLQD 536

Query: 61  ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR 120
            SFGY    +L K++N  + +DSRIA+VG NG GK+T+LK++  +L+P  G V R+ ++R
Sbjct: 537 VSFGYDENNLLLKDVNLDVQMDSRIALVGANGCGKTTLLKIMMEQLRPLKGFVSRNPRLR 596

Query: 121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQK 180
           I  F+QHHVD +DL+++ + +M + FPG  +++ R HLGSFG+TG L LQ M  LSGGQK
Sbjct: 597 IGYFTQHHVDSMDLTTSAVDWMSKSFPGKTDEEYRRHLGSFGITGTLGLQKMQLLSGGQK 656

Query: 181 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEE 240
           SRVAFA +    PHI++LDEPSNHLD   ++AL++ L  F GG+LMVSHD  +I    +E
Sbjct: 657 SRVAFAALCLNNPHILVLDEPSNHLDTTGLDALVEALKNFNGGVLMVSHDISVIDSVCKE 716

Query: 241 LWVVSEGKATPFHGTFHDYKK-MLQS 265
           +WV  +G    F GT +DY+  +LQS
Sbjct: 717 IWVSEQGTVKRFEGTIYDYRDYILQS 742

Positive effector of the eIF-2-alpha kinase activity of GCN2.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O59672|YB89_SCHPO Uncharacterized ABC transporter ATP-binding protein C29A3.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC29A3.09c PE=3 SV=1

 Score =  254 bits (650), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 129/267 (48%), Positives = 181/267 (67%), Gaps = 3/267 (1%)

Query: 1   MQSFIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSD 60
           +QSFIDKFRYNA ++S  QSRIK LE++  + E     +       P ++  PPI+  SD
Sbjct: 464 LQSFIDKFRYNAAKSSEAQSRIKKLEKLP-ILEKPQTEEEVEFEFPPVEKISPPILQMSD 522

Query: 61  ASFGY-PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV 119
            +F Y PG PIL K+++  + +DSRI +VGPNG GKST+LKL+  +L P+SG V R  ++
Sbjct: 523 VNFEYVPGHPIL-KHVDIDVQMDSRIGVVGPNGAGKSTMLKLLIEQLHPTSGIVSRHPRL 581

Query: 120 RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQ 179
           RIA F+QHHVD LDL+ N L ++ + FPG  E++ R HLG+FGV+G LALQ M TLSGGQ
Sbjct: 582 RIAYFAQHHVDTLDLNLNALSFLAKTFPGKGEEEYRRHLGAFGVSGPLALQKMITLSGGQ 641

Query: 180 KSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVE 239
           KSRVAFA +  + PHI++LDEP+NHLD+++++AL + +  FQGG+++VSHD   +  +  
Sbjct: 642 KSRVAFACLGLQNPHILILDEPTNHLDMESMDALTRAVKRFQGGVILVSHDVDFLDKTCT 701

Query: 240 ELWVVSEGKATPFHGTFHDYKKMLQSR 266
            +W       + F GT   YKK   S+
Sbjct: 702 SIWQCDHNVVSKFDGTISQYKKFCLSQ 728

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q8K268|ABCF3_MOUSE ATP-binding cassette sub-family F member 3 OS=Mus musculus GN=Abcf3 PE=1 SV=1

 Score =  247 bits (631), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 119/266 (44%), Positives = 173/266 (65%)

Query: 1   MQSFIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSD 60
           +Q FID+FRYNA RAS VQS++K LE++  +  V  + +   +FP   ++  PPI+   +
Sbjct: 437 IQVFIDRFRYNANRASQVQSKLKMLEKLPELKPVDKESEVVLKFPDGFEKFSPPILQLDE 496

Query: 61  ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR 120
             F Y     +F  L+   DL+SRI +VG NG GKST+LKL+ G+L P  G       ++
Sbjct: 497 VDFYYDPKHSIFSRLSVSADLESRICVVGENGAGKSTMLKLLMGDLSPVRGIRHAHRNLK 556

Query: 121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQK 180
           I  FSQHHV+ LDL+ + +  + R FPG+PE++ R  LG +G++G LA++P+ +LSGGQK
Sbjct: 557 IGYFSQHHVEQLDLNVSAVELLARKFPGLPEEEYRHQLGRYGISGELAMRPVASLSGGQK 616

Query: 181 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEE 240
           SRVAFA++T   P+  +LDEP+NHLD++ +EAL Q L  F+GG+++VSHDE  I    +E
Sbjct: 617 SRVAFAQMTMPCPNFYILDEPTNHLDMETIEALGQALNNFRGGVILVSHDERFIRLVCKE 676

Query: 241 LWVVSEGKATPFHGTFHDYKKMLQSR 266
           LWV   G  T   G F  Y+ +LQ +
Sbjct: 677 LWVCENGSVTRVEGGFDQYRALLQEQ 702

Mus musculus (taxid: 10090)

>sp|Q66H39|ABCF3_RAT ATP-binding cassette sub-family F member 3 OS=Rattus norvegicus GN=Abcf3 PE=2 SV=1

 Score =  246 bits (629), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 119/266 (44%), Positives = 173/266 (65%)

Query: 1   MQSFIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSD 60
           +Q FID+FRYNA RAS VQS++K LE++  +  V  + +   +FP   ++  PPI+   +
Sbjct: 437 IQVFIDRFRYNANRASQVQSKLKMLEKLPELKPVDKESEVVLKFPDGFEKFSPPILQLDE 496

Query: 61  ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR 120
             F Y    I+F  L+   DL+SRI +VG NG GKST+LKL+ G+L P  G       ++
Sbjct: 497 VDFYYDPKHIIFSRLSVSADLESRICVVGENGAGKSTMLKLLMGDLAPVRGIRHAHRNLK 556

Query: 121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQK 180
           I  FSQHHV+ LDL+ + +  + R FPG PE++ R  LG +G++G LA++P+ +LSGGQK
Sbjct: 557 IGYFSQHHVEQLDLNVSAVELLARKFPGRPEEEYRHQLGRYGISGELAMRPVASLSGGQK 616

Query: 181 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEE 240
           SRVAFA++T   P+  +LDEP+NHLD++ +EAL   L  F+GG+++VSHDE  I    +E
Sbjct: 617 SRVAFAQMTMPCPNFYILDEPTNHLDMETIEALGHALNNFRGGVVLVSHDERFIRLVCKE 676

Query: 241 LWVVSEGKATPFHGTFHDYKKMLQSR 266
           LWV  +G  T   G F  Y+ +LQ +
Sbjct: 677 LWVCEKGSVTRVEGGFDQYRALLQEQ 702

Rattus norvegicus (taxid: 10116)

>sp|Q9NUQ8|ABCF3_HUMAN ATP-binding cassette sub-family F member 3 OS=Homo sapiens GN=ABCF3 PE=1 SV=2

 Score =  244 bits (624), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 118/266 (44%), Positives = 172/266 (64%)

Query: 1   MQSFIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSD 60
           +Q FID+FRYNA RAS VQS++K LE++  +  V  + +   +FP   ++  PPI+   +
Sbjct: 437 IQVFIDRFRYNANRASQVQSKLKMLEKLPELKPVDKESEVVMKFPDGFEKFSPPILQLDE 496

Query: 61  ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR 120
             F Y    ++F  L+   DL+SRI +VG NG GKST+LKL+ G+L P  G       ++
Sbjct: 497 VDFYYDPKHVIFSRLSVSADLESRICVVGENGAGKSTMLKLLLGDLAPVRGIRHAHRNLK 556

Query: 121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQK 180
           I  FSQHHV+ LDL+ + +  + R FPG PE++ R  LG +G++G LA++P+ +LSGGQK
Sbjct: 557 IGYFSQHHVEQLDLNVSAVELLARKFPGRPEEEYRHQLGRYGISGELAMRPLASLSGGQK 616

Query: 181 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEE 240
           SRVAFA++T   P+  +LDEP+NHLD++ +EAL + L  F+GG+++VSHDE  I     E
Sbjct: 617 SRVAFAQMTMPCPNFYILDEPTNHLDMETIEALGRALNNFRGGVILVSHDERFIRLVCRE 676

Query: 241 LWVVSEGKATPFHGTFHDYKKMLQSR 266
           LWV   G  T   G F  Y+ +LQ +
Sbjct: 677 LWVCEGGGVTRVEGGFDQYRALLQEQ 702

Homo sapiens (taxid: 9606)

>sp|Q5R9Z5|ABCF3_PONAB ATP-binding cassette sub-family F member 3 OS=Pongo abelii GN=ABCF3 PE=2 SV=1

 Score =  244 bits (623), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 118/266 (44%), Positives = 172/266 (64%)

Query: 1   MQSFIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSD 60
           +Q FID+FRYNA RAS VQS++K LE++  +  V  + +   +FP   ++  PPI+   +
Sbjct: 437 IQVFIDRFRYNANRASQVQSKLKMLEKLPELKPVDKESEVVMKFPDGFEKFSPPILQLDE 496

Query: 61  ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR 120
             F Y    ++F  L+   DL+SRI +VG NG GKST+LKL+ G+L P  G       ++
Sbjct: 497 VDFYYDPKHVIFSRLSVSADLESRICVVGENGAGKSTMLKLLLGDLAPVRGIRHAHRNLK 556

Query: 121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQK 180
           I  FSQHHV+ LDL+ + +  + R FPG PE++ R  LG +G++G LA++P+ +LSGGQK
Sbjct: 557 IGYFSQHHVEQLDLNVSAVELLARKFPGRPEEEYRHQLGRYGISGELAMRPVASLSGGQK 616

Query: 181 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEE 240
           SRVAFA++T   P+  +LDEP+NHLD++ +EAL + L  F+GG+++VSHDE  I     E
Sbjct: 617 SRVAFAQMTMPCPNFYILDEPTNHLDMETIEALGRALNNFRGGVILVSHDERFIRLVCRE 676

Query: 241 LWVVSEGKATPFHGTFHDYKKMLQSR 266
           LWV   G  T   G F  Y+ +LQ +
Sbjct: 677 LWVCEGGGVTRVEGGFDQYRALLQEQ 702

Pongo abelii (taxid: 9601)

>sp|Q8T6B4|ABCF4_DICDI ABC transporter F family member 4 OS=Dictyostelium discoideum GN=abcF4 PE=3 SV=1

 Score =  244 bits (623), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 120/261 (45%), Positives = 174/261 (66%), Gaps = 3/261 (1%)

Query: 1    MQSFIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSD 60
            M  FI K + N  +A    SR K +E++  ++    D     +FP P+    PP++ F D
Sbjct: 870  MNEFITKNKNNT-QAKQAASRAKKMEKIETIELEREDASLVVDFPQPE-HLTPPLLVFKD 927

Query: 61   ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR 120
              FGY G P +FK L+ GID+DS+IA+VG NG+GKST++KL+ G+L  ++G + RS K+R
Sbjct: 928  VCFGYEGRPTMFKKLDIGIDMDSKIALVGMNGVGKSTLMKLMNGDLHETTGYIERSRKMR 987

Query: 121  IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQK 180
            +A FSQH VD LD +  P+ Y    F   P Q++R HLG FG+  +L L  + TLSGGQK
Sbjct: 988  VARFSQHFVDQLDTTMTPIEYFQSKFNNPPVQQIRNHLGRFGICNSLPLHKITTLSGGQK 1047

Query: 181  SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEE 240
            SRV  A++ + +PHI+LLDEP+NHLD+DA+EAL +G+  F GG++++SH++HLI+   E+
Sbjct: 1048 SRVILAELAWAEPHILLLDEPTNHLDIDAIEALAEGINAFTGGVVLISHNQHLINLIAEQ 1107

Query: 241  LWVV-SEGKATPFHGTFHDYK 260
            +WVV  +G    + GTF DYK
Sbjct: 1108 IWVVKKDGTIYLYPGTFMDYK 1128

Dictyostelium discoideum (taxid: 44689)

>sp|Q9FJH6|AB1F_ARATH ABC transporter F family member 1 OS=Arabidopsis thaliana GN=ABCF1 PE=1 SV=1

 Score =  240 bits (612), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 119/270 (44%), Positives = 178/270 (65%), Gaps = 5/270 (1%)

Query: 1   MQSFIDKFRY-NAKRASLVQSRIKAL---ERMGHVDEVVNDPDYKFEFPTPDDRPGPPII 56
           M+ +I +F + +AK A   QS+ K L   ER G  ++V  D    F F      P PP++
Sbjct: 322 MKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVARDSVLVFRFADVGKLP-PPVL 380

Query: 57  SFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS 116
            F + SFGY    +++KN++FG+DLDSR+A+VGPNG GKST+LKL+ GEL P+ G V R 
Sbjct: 381 QFVEVSFGYTPDYLIYKNIDFGVDLDSRVALVGPNGAGKSTLLKLMTGELHPTEGMVRRH 440

Query: 117 AKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLS 176
             ++IA + QH  + LDL    LLYMMR FPG  E+K+RA +G FG+TG   + PM  LS
Sbjct: 441 NHLKIAQYHQHLAEKLDLELPALLYMMREFPGTEEEKMRAAIGRFGLTGKAQVMPMKNLS 500

Query: 177 GGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISG 236
            GQ+SRV FA + +K+P+++LLDEP+NHLD++ +++L + L  + GG+++VSHD  LI+ 
Sbjct: 501 DGQRSRVIFAWLAYKQPNMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQ 560

Query: 237 SVEELWVVSEGKATPFHGTFHDYKKMLQSR 266
              E+WV  +   T ++G   D+K+ L+++
Sbjct: 561 VAHEIWVCEKQCITKWNGDIMDFKRHLKAK 590

Arabidopsis thaliana (taxid: 3702)

>sp|Q99LE6|ABCF2_MOUSE ATP-binding cassette sub-family F member 2 OS=Mus musculus GN=Abcf2 PE=2 SV=1

 Score =  212 bits (540), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 113/272 (41%), Positives = 175/272 (64%), Gaps = 7/272 (2%)

Query: 1   MQSFIDKFRY-NAKRASLVQSRIKALERM---GHVDEVVNDPDYKFEFPTPDDRPGPPII 56
           M+++I +F + +AK A   QS+ K L++M   G  + VV+D    F FP P  +  PP+I
Sbjct: 343 MKNYIARFGHGSAKLARQAQSKEKTLQKMMASGLTERVVSDKTLSFYFP-PCGKIPPPVI 401

Query: 57  SFSDASFGY-PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115
              + SF Y   GP ++ NL FGIDLD+R+A+VGPNG GKST+LKL+ GEL P+ G + +
Sbjct: 402 MVQNVSFKYTKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIRK 461

Query: 116 SAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPE-QKLRAHLGSFGVTGNLALQPMYT 174
            + V+I  + QH  + LDL  +PL YMM+C+P + E +++R  +G +G+TG   + P+  
Sbjct: 462 HSHVKIGRYHQHLQEQLDLDLSPLEYMMKCYPEIKEKEEMRKIIGRYGLTGKQQVSPIRN 521

Query: 175 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLI 234
           LS GQK RV  A + ++ PH++ LDEP+NHLD++ ++AL   +  F+GG+++VSHD  LI
Sbjct: 522 LSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDIETIDALADAINEFEGGMMLVSHDFRLI 581

Query: 235 SGSVEELWVVSEGKATPFHGTFHDYKKMLQSR 266
               +E+WV  +   T + G    YK+ L+S+
Sbjct: 582 QQVAQEIWVCEKQTITKWPGDILAYKEHLKSK 613

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	266
255555673	383	ATP-dependent transporter, putative [Ric	0.996	0.691	0.966	1e-149
225426226	716	PREDICTED: ABC transporter F family memb	0.996	0.370	0.958	1e-149
449501829	519	PREDICTED: ABC transporter F family memb	0.996	0.510	0.958	1e-149
449452232	710	PREDICTED: ABC transporter F family memb	0.996	0.373	0.958	1e-149
356575104	712	PREDICTED: ABC transporter F family memb	0.996	0.372	0.947	1e-147
224058091	716	ABC transporter family protein [Populus	0.996	0.370	0.943	1e-147
357462361	713	ABC transporter family protein [Medicago	0.996	0.371	0.932	1e-145
15217680	715	ABC transporter F family member 3 [Arabi	0.996	0.370	0.909	1e-144
297839987	715	ATGCN3 [Arabidopsis lyrata subsp. lyrata	0.996	0.370	0.909	1e-144
218191854	708	hypothetical protein OsI_09528 [Oryza sa	0.996	0.374	0.905	1e-141

>gi|255555673|ref|XP_002518872.1| ATP-dependent transporter, putative [Ricinus communis] gi|223541859|gb|EEF43405.1| ATP-dependent transporter, putative [Ricinus communis]

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 256/265 (96%), Positives = 264/265 (99%)

Query: 1   MQSFIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSD 60
           MQSFIDKFRYNAKRASLVQSRIKAL+R+GHVDE++NDPDYKFEFPTPDDRPGPPIISFSD
Sbjct: 118 MQSFIDKFRYNAKRASLVQSRIKALDRLGHVDEIINDPDYKFEFPTPDDRPGPPIISFSD 177

Query: 61  ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR 120
           ASFGYPGGP+LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP+SGTVFRSAKVR
Sbjct: 178 ASFGYPGGPMLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPTSGTVFRSAKVR 237

Query: 121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQK 180
           IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQK
Sbjct: 238 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQK 297

Query: 181 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEE 240
           SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEE
Sbjct: 298 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEE 357

Query: 241 LWVVSEGKATPFHGTFHDYKKMLQS 265
           LWVVSEG+ATPFHGTF DYKK+LQS
Sbjct: 358 LWVVSEGRATPFHGTFQDYKKILQS 382

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426226|ref|XP_002263179.1| PREDICTED: ABC transporter F family member 3 [Vitis vinifera] gi|297742399|emb|CBI34548.3| unnamed protein product [Vitis vinifera]

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 254/265 (95%), Positives = 263/265 (99%)

Query: 1   MQSFIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSD 60
           MQSFIDKFRYNAKRA+LVQSRIKAL+R+GHVDEV+NDPDYKFEFPTPDDRPG PIISFSD
Sbjct: 451 MQSFIDKFRYNAKRAALVQSRIKALDRLGHVDEVINDPDYKFEFPTPDDRPGLPIISFSD 510

Query: 61  ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR 120
           ASFGYPGGP+LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR
Sbjct: 511 ASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR 570

Query: 121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQK 180
           IAVFSQHHVDGLDLSSNPLLYMMRC+PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQK
Sbjct: 571 IAVFSQHHVDGLDLSSNPLLYMMRCYPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQK 630

Query: 181 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEE 240
           SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGG+LMVSHDEHLISGSVEE
Sbjct: 631 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISGSVEE 690

Query: 241 LWVVSEGKATPFHGTFHDYKKMLQS 265
           LWVVSEGK +PFHGTFHDYKK+LQS
Sbjct: 691 LWVVSEGKVSPFHGTFHDYKKILQS 715

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449501829|ref|XP_004161469.1| PREDICTED: ABC transporter F family member 3-like [Cucumis sativus]

 Score =  532 bits (1371), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 254/265 (95%), Positives = 260/265 (98%)

Query: 1   MQSFIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSD 60
           MQ+FIDKFRYNAKRASLVQSRIKALER+GHVDEV+NDPDYKFEFPTPDDRPGPPIISFSD
Sbjct: 254 MQTFIDKFRYNAKRASLVQSRIKALERIGHVDEVINDPDYKFEFPTPDDRPGPPIISFSD 313

Query: 61  ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR 120
           ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP+SGTVFRSAKVR
Sbjct: 314 ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPTSGTVFRSAKVR 373

Query: 121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQK 180
           IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQK
Sbjct: 374 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQK 433

Query: 181 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEE 240
           SRVAF+KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEE
Sbjct: 434 SRVAFSKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEE 493

Query: 241 LWVVSEGKATPFHGTFHDYKKMLQS 265
           LW VSEGK  PF GTF DYKK+LQS
Sbjct: 494 LWAVSEGKVNPFRGTFQDYKKILQS 518

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452232|ref|XP_004143864.1| PREDICTED: ABC transporter F family member 3-like [Cucumis sativus]

 Score =  532 bits (1370), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 254/265 (95%), Positives = 260/265 (98%)

Query: 1   MQSFIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSD 60
           MQ+FIDKFRYNAKRASLVQSRIKALER+GHVDEV+NDPDYKFEFPTPDDRPGPPIISFSD
Sbjct: 445 MQTFIDKFRYNAKRASLVQSRIKALERIGHVDEVINDPDYKFEFPTPDDRPGPPIISFSD 504

Query: 61  ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR 120
           ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP+SGTVFRSAKVR
Sbjct: 505 ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPTSGTVFRSAKVR 564

Query: 121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQK 180
           IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQK
Sbjct: 565 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQK 624

Query: 181 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEE 240
           SRVAF+KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEE
Sbjct: 625 SRVAFSKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEE 684

Query: 241 LWVVSEGKATPFHGTFHDYKKMLQS 265
           LW VSEGK  PF GTF DYKK+LQS
Sbjct: 685 LWAVSEGKVNPFRGTFQDYKKILQS 709

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575104|ref|XP_003555682.1| PREDICTED: ABC transporter F family member 3-like [Glycine max]

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 251/265 (94%), Positives = 261/265 (98%)

Query: 1   MQSFIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSD 60
           MQ+FIDKFRYNAKRASLVQSRIKAL+RMGHVDE+VNDPDYKF+FPTP+DRPG PIISFSD
Sbjct: 447 MQTFIDKFRYNAKRASLVQSRIKALDRMGHVDEIVNDPDYKFDFPTPEDRPGAPIISFSD 506

Query: 61  ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR 120
           ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG+LQPSSGTVFRSAKVR
Sbjct: 507 ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGDLQPSSGTVFRSAKVR 566

Query: 121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQK 180
           IAVFSQHHVDGLDLSSNPLLYMMRC+PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQK
Sbjct: 567 IAVFSQHHVDGLDLSSNPLLYMMRCYPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQK 626

Query: 181 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEE 240
           SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEE
Sbjct: 627 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEE 686

Query: 241 LWVVSEGKATPFHGTFHDYKKMLQS 265
           LWVVS+G+  PFHGTF DYKK+LQS
Sbjct: 687 LWVVSDGRVAPFHGTFQDYKKILQS 711

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224058091|ref|XP_002299447.1| ABC transporter family protein [Populus trichocarpa] gi|222846705|gb|EEE84252.1| ABC transporter family protein [Populus trichocarpa]

 Score =  525 bits (1352), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 250/265 (94%), Positives = 262/265 (98%)

Query: 1   MQSFIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSD 60
           MQ+FIDKFRYNAKRASLVQSRIKAL+R+GH+DE+VNDPDYKFEFPTPDDRPG PIISFSD
Sbjct: 451 MQTFIDKFRYNAKRASLVQSRIKALDRLGHMDEIVNDPDYKFEFPTPDDRPGAPIISFSD 510

Query: 61  ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR 120
           ASFGYPGGP++FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP+SGTVFRSAKVR
Sbjct: 511 ASFGYPGGPLMFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPTSGTVFRSAKVR 570

Query: 121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQK 180
           IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQK
Sbjct: 571 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQK 630

Query: 181 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEE 240
           SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSV+E
Sbjct: 631 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVDE 690

Query: 241 LWVVSEGKATPFHGTFHDYKKMLQS 265
           LWVVS+G+ TPFHGTF DYKK+LQS
Sbjct: 691 LWVVSQGRVTPFHGTFLDYKKILQS 715

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357462361|ref|XP_003601462.1| ABC transporter family protein [Medicago truncatula] gi|355490510|gb|AES71713.1| ABC transporter family protein [Medicago truncatula]

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 247/265 (93%), Positives = 258/265 (97%)

Query: 1   MQSFIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSD 60
           MQSFIDKFRYNAKRASLVQSRIKAL+R+GHVD ++NDPDYKFEFPTPDDRPG PIISFSD
Sbjct: 448 MQSFIDKFRYNAKRASLVQSRIKALDRLGHVDAIINDPDYKFEFPTPDDRPGAPIISFSD 507

Query: 61  ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR 120
           ASFGYPGGPILF+NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR
Sbjct: 508 ASFGYPGGPILFRNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR 567

Query: 121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQK 180
           IAVFSQHHVDGLDLSSNPLLYMMRC+PGVPEQKLR HLGSFGVTGNLALQPMYTLSGGQK
Sbjct: 568 IAVFSQHHVDGLDLSSNPLLYMMRCYPGVPEQKLRGHLGSFGVTGNLALQPMYTLSGGQK 627

Query: 181 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEE 240
           SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEE
Sbjct: 628 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEE 687

Query: 241 LWVVSEGKATPFHGTFHDYKKMLQS 265
           LW+VSEG+  PFHGTF +YK++L S
Sbjct: 688 LWIVSEGRVAPFHGTFAEYKRILHS 712

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15217680|ref|NP_176636.1| ABC transporter F family member 3 [Arabidopsis thaliana] gi|75329083|sp|Q8H0V6.1|AB3F_ARATH RecName: Full=ABC transporter F family member 3; Short=ABC transporter ABCF.3; Short=AtABCF3; AltName: Full=GCN20-type ATP-binding cassette protein GCN3 gi|25082978|gb|AAN72026.1| ABC transporter protein, putative [Arabidopsis thaliana] gi|34365711|gb|AAQ65167.1| At1g64550 [Arabidopsis thaliana] gi|332196131|gb|AEE34252.1| ABC transporter F family member 3 [Arabidopsis thaliana]

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 241/265 (90%), Positives = 260/265 (98%)

Query: 1   MQSFIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSD 60
           MQ+FIDKFRYNAKRASLVQSRIKAL+R+ HVD+V+NDPDYKFEFPTPDD+PGPPIISFSD
Sbjct: 449 MQAFIDKFRYNAKRASLVQSRIKALDRLAHVDQVINDPDYKFEFPTPDDKPGPPIISFSD 508

Query: 61  ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR 120
           ASFGYPGGP+LF+NLNFGIDLDSRIAMVGPNGIGKSTILKLI+G+LQPSSGTVFRSAKVR
Sbjct: 509 ASFGYPGGPLLFRNLNFGIDLDSRIAMVGPNGIGKSTILKLISGDLQPSSGTVFRSAKVR 568

Query: 121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQK 180
           +AVFSQHHVDGLDLSSNPLLYMMRC+PGVPEQKLR+HLGS GVTGNLALQPMYTLSGGQK
Sbjct: 569 VAVFSQHHVDGLDLSSNPLLYMMRCYPGVPEQKLRSHLGSLGVTGNLALQPMYTLSGGQK 628

Query: 181 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEE 240
           SRVAFAKITFKKPH++LLDEPSNHLDLDAVEALIQGLVLFQGGI MVSHDEHLISGSV+E
Sbjct: 629 SRVAFAKITFKKPHLLLLDEPSNHLDLDAVEALIQGLVLFQGGICMVSHDEHLISGSVDE 688

Query: 241 LWVVSEGKATPFHGTFHDYKKMLQS 265
           LWVVS+G+  PFHGTFHDYKK+LQS
Sbjct: 689 LWVVSDGRIAPFHGTFHDYKKLLQS 713

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839987|ref|XP_002887875.1| ATGCN3 [Arabidopsis lyrata subsp. lyrata] gi|297333716|gb|EFH64134.1| ATGCN3 [Arabidopsis lyrata subsp. lyrata]

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 241/265 (90%), Positives = 260/265 (98%)

Query: 1   MQSFIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSD 60
           MQ+FIDKFRYNAKRASLVQSRIKAL+R+ HVD+V+NDPDYKFEFPTPDD+PGPPIISFSD
Sbjct: 449 MQAFIDKFRYNAKRASLVQSRIKALDRLAHVDQVINDPDYKFEFPTPDDKPGPPIISFSD 508

Query: 61  ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR 120
           ASFGYPGGP+LF+NLNFGIDLDSRIAMVGPNGIGKSTILKLI+G+LQPSSGTVFRSAKVR
Sbjct: 509 ASFGYPGGPLLFRNLNFGIDLDSRIAMVGPNGIGKSTILKLISGDLQPSSGTVFRSAKVR 568

Query: 121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQK 180
           +AVFSQHHVDGLDLSSNPLLYMMRC+PGVPEQKLR+HLGS GVTGNLALQPMYTLSGGQK
Sbjct: 569 VAVFSQHHVDGLDLSSNPLLYMMRCYPGVPEQKLRSHLGSLGVTGNLALQPMYTLSGGQK 628

Query: 181 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEE 240
           SRVAFAKITFKKPH++LLDEPSNHLDLDAVEALIQGLVLFQGGI MVSHDEHLISGSV+E
Sbjct: 629 SRVAFAKITFKKPHLLLLDEPSNHLDLDAVEALIQGLVLFQGGICMVSHDEHLISGSVDE 688

Query: 241 LWVVSEGKATPFHGTFHDYKKMLQS 265
           LWVVS+G+  PFHGTFHDYKK+LQS
Sbjct: 689 LWVVSDGRIAPFHGTFHDYKKLLQS 713

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218191854|gb|EEC74281.1| hypothetical protein OsI_09528 [Oryza sativa Indica Group]

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 240/265 (90%), Positives = 257/265 (96%)

Query: 1   MQSFIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSD 60
           MQ+FIDKFRYNAKRASLVQSRIKALERM HVD VV+DPDYKFEFPTPDDRPGPPIISFSD
Sbjct: 444 MQAFIDKFRYNAKRASLVQSRIKALERMEHVDAVVSDPDYKFEFPTPDDRPGPPIISFSD 503

Query: 61  ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR 120
           ASFGYPGGP LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLI+G+LQP+SGTVFRS KVR
Sbjct: 504 ASFGYPGGPTLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGDLQPTSGTVFRSPKVR 563

Query: 121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQK 180
           +AVF+QHHVDGLDL+ NPLLYMMRC+PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQK
Sbjct: 564 MAVFNQHHVDGLDLTVNPLLYMMRCYPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQK 623

Query: 181 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEE 240
           SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL++FQGG+LMVSHDEHLI+GSV+E
Sbjct: 624 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLLVFQGGVLMVSHDEHLITGSVDE 683

Query: 241 LWVVSEGKATPFHGTFHDYKKMLQS 265
           LWVVSEG+ +PF GTF DYKKML+S
Sbjct: 684 LWVVSEGRVSPFAGTFKDYKKMLKS 708

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	266
TAIR|locus:2019409	715	ABCF3 "ATP-binding cassette F3	0.996	0.370	0.909	2.1e-132
DICTYBASE|DDB_G0285997	708	abcF1 "ABC transporter-related	0.984	0.370	0.529	3.2e-72
POMBASE|SPBC29A3.09c	736	SPBC29A3.09c "AAA family ATPas	0.992	0.358	0.494	4e-67
SGD|S000001905	752	GCN20 "Positive regulator of t	0.992	0.351	0.481	1.2e-65
ASPGD|ASPL0000074597	751	AN4315 [Emericella nidulans (t	0.996	0.352	0.466	5.2e-65
CGD|CAL0005158	751	GCN20 [Candida albicans (taxid	0.992	0.351	0.477	1.2e-63
UNIPROTKB|Q5ABB0	751	GCN20 "ATP-binding cassette pr	0.992	0.351	0.477	1.2e-63
UNIPROTKB|G4NB88	750	MGG_11547 "Uncharacterized pro	0.992	0.352	0.468	2e-63
MGI|MGI:1351656	709	Abcf3 "ATP-binding cassette, s	1.0	0.375	0.447	1e-59
WB|WBGene00018339	712	abcf-3 [Caenorhabditis elegans	0.981	0.366	0.467	1.3e-59

TAIR|locus:2019409 ABCF3 "ATP-binding cassette F3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1298 (462.0 bits), Expect = 2.1e-132, P = 2.1e-132
 Identities = 241/265 (90%), Positives = 260/265 (98%)

Query:     1 MQSFIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSD 60
             MQ+FIDKFRYNAKRASLVQSRIKAL+R+ HVD+V+NDPDYKFEFPTPDD+PGPPIISFSD
Sbjct:   449 MQAFIDKFRYNAKRASLVQSRIKALDRLAHVDQVINDPDYKFEFPTPDDKPGPPIISFSD 508

Query:    61 ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR 120
             ASFGYPGGP+LF+NLNFGIDLDSRIAMVGPNGIGKSTILKLI+G+LQPSSGTVFRSAKVR
Sbjct:   509 ASFGYPGGPLLFRNLNFGIDLDSRIAMVGPNGIGKSTILKLISGDLQPSSGTVFRSAKVR 568

Query:   121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQK 180
             +AVFSQHHVDGLDLSSNPLLYMMRC+PGVPEQKLR+HLGS GVTGNLALQPMYTLSGGQK
Sbjct:   569 VAVFSQHHVDGLDLSSNPLLYMMRCYPGVPEQKLRSHLGSLGVTGNLALQPMYTLSGGQK 628

Query:   181 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEE 240
             SRVAFAKITFKKPH++LLDEPSNHLDLDAVEALIQGLVLFQGGI MVSHDEHLISGSV+E
Sbjct:   629 SRVAFAKITFKKPHLLLLDEPSNHLDLDAVEALIQGLVLFQGGICMVSHDEHLISGSVDE 688

Query:   241 LWVVSEGKATPFHGTFHDYKKMLQS 265
             LWVVS+G+  PFHGTFHDYKK+LQS
Sbjct:   689 LWVVSDGRIAPFHGTFHDYKKLLQS 713

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005215 "transporter activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0005829 "cytosol" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0006406 "mRNA export from nucleus" evidence=RCA

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

DICTYBASE|DDB_G0285997 abcF1 "ABC transporter-related protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 730 (262.0 bits), Expect = 3.2e-72, P = 3.2e-72
 Identities = 142/268 (52%), Positives = 191/268 (71%)

Query:     1 MQSFIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSD 60
             +Q+FID+FRYNAKRA + QSRIK LERM  + EV++DP    +F  P+    PPI+ F D
Sbjct:   439 IQAFIDRFRYNAKRAKMAQSRIKQLERMEDIGEVLDDPTVTLQFLEPEPL-APPILQFQD 497

Query:    61 ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR 120
              SFGY    +LFKNLN GID+ SR+A+VG NG GK+T+L+L+ GEL+ ++G V R+ K+R
Sbjct:   498 VSFGYTPDKLLFKNLNLGIDMGSRVALVGANGAGKTTLLRLLCGELEETNGLVIRNGKLR 557

Query:   121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQK 180
              + FSQH VD LDLS +PL   +  +PG   Q  R+HLG FG++G++AL+ + TLSGGQK
Sbjct:   558 FSRFSQHFVDQLDLSKSPLDNFLAKYPGTTAQTARSHLGKFGLSGDIALRTVNTLSGGQK 617

Query:   181 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEE 240
             SRV  A+I++ KPHI+LLDEPSNHLD+D V+AL   L +F+GGIL+VSHDE LIS   +E
Sbjct:   618 SRVVLAQISYTKPHILLLDEPSNHLDIDTVDALCHALNVFEGGILLVSHDERLISLVCDE 677

Query:   241 LWVVSEGKATP-----FHGTFHDYKKML 263
             +W     +  P     F G ++DYKK +
Sbjct:   678 IWYFDGEEGEPKEVKNFDGDWNDYKKAI 705

GO:0005615 "extracellular space" evidence=IDA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0006448 "regulation of translational elongation" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0006200 "ATP catabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

POMBASE|SPBC29A3.09c SPBC29A3.09c "AAA family ATPase Gcn20 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 682 (245.1 bits), Expect = 4.0e-67, P = 4.0e-67
 Identities = 132/267 (49%), Positives = 188/267 (70%)

Query:     1 MQSFIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSD 60
             +QSFIDKFRYNA ++S  QSRIK LE++  +++   + + +FEFP P ++  PPI+  SD
Sbjct:   464 LQSFIDKFRYNAAKSSEAQSRIKKLEKLPILEKPQTEEEVEFEFP-PVEKISPPILQMSD 522

Query:    61 ASFGY-PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV 119
              +F Y PG PIL K+++  + +DSRI +VGPNG GKST+LKL+  +L P+SG V R  ++
Sbjct:   523 VNFEYVPGHPIL-KHVDIDVQMDSRIGVVGPNGAGKSTMLKLLIEQLHPTSGIVSRHPRL 581

Query:   120 RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQ 179
             RIA F+QHHVD LDL+ N L ++ + FPG  E++ R HLG+FGV+G LALQ M TLSGGQ
Sbjct:   582 RIAYFAQHHVDTLDLNLNALSFLAKTFPGKGEEEYRRHLGAFGVSGPLALQKMITLSGGQ 641

Query:   180 KSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVE 239
             KSRVAFA +  + PHI++LDEP+NHLD+++++AL + +  FQGG+++VSHD   +  +  
Sbjct:   642 KSRVAFACLGLQNPHILILDEPTNHLDMESMDALTRAVKRFQGGVILVSHDVDFLDKTCT 701

Query:   240 ELWVVSEGKATPFHGTFHDYKKMLQSR 266
              +W       + F GT   YKK   S+
Sbjct:   702 SIWQCDHNVVSKFDGTISQYKKFCLSQ 728

GO:0002182 "cytoplasmic translational elongation" evidence=NAS

GO:0005524 "ATP binding" evidence=ISM

GO:0005829 "cytosol" evidence=IDA

GO:0006448 "regulation of translational elongation" evidence=ISO

GO:0016887 "ATPase activity" evidence=ISM

GO:0022626 "cytosolic ribosome" evidence=ISO

SGD|S000001905 GCN20 "Positive regulator of the Gcn2p kinase activity" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
 Identities = 128/266 (48%), Positives = 180/266 (67%)

Query:     1 MQSFIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSD 60
             +Q FIDK+RYNA ++   QSRIK LE++  ++    D    F+FP  D +  PPII   D
Sbjct:   478 LQEFIDKYRYNAAKSQEAQSRIKKLEKLPVLEPPEQDKTIDFKFPECD-KLSPPIIQLQD 536

Query:    61 ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR 120
              SFGY    +L K++N  + +DSRIA+VG NG GK+T+LK++  +L+P  G V R+ ++R
Sbjct:   537 VSFGYDENNLLLKDVNLDVQMDSRIALVGANGCGKTTLLKIMMEQLRPLKGFVSRNPRLR 596

Query:   121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQK 180
             I  F+QHHVD +DL+++ + +M + FPG  +++ R HLGSFG+TG L LQ M  LSGGQK
Sbjct:   597 IGYFTQHHVDSMDLTTSAVDWMSKSFPGKTDEEYRRHLGSFGITGTLGLQKMQLLSGGQK 656

Query:   181 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEE 240
             SRVAFA +    PHI++LDEPSNHLD   ++AL++ L  F GG+LMVSHD  +I    +E
Sbjct:   657 SRVAFAALCLNNPHILVLDEPSNHLDTTGLDALVEALKNFNGGVLMVSHDISVIDSVCKE 716

Query:   241 LWVVSEGKATPFHGTFHDYKK-MLQS 265
             +WV  +G    F GT +DY+  +LQS
Sbjct:   717 IWVSEQGTVKRFEGTIYDYRDYILQS 742

GO:0005524 "ATP binding" evidence=IEA

GO:0006200 "ATP catabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005829 "cytosol" evidence=IPI

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0006448 "regulation of translational elongation" evidence=IMP;IPI

GO:0016887 "ATPase activity" evidence=IEA;ISS

ASPGD|ASPL0000074597 AN4315 [Emericella nidulans (taxid:162425)]

 Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
 Identities = 124/266 (46%), Positives = 183/266 (68%)

Query:     1 MQSFIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSD 60
             +Q+FIDKFRYNA ++S  QSRIK LERM  +    +D    F+FP  + +  PPI+  ++
Sbjct:   477 LQAFIDKFRYNAAKSSEAQSRIKKLERMPVLTPPESDYVVHFKFPEVE-KLSPPIVQMTE 535

Query:    61 ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR 120
              +FGY    +L KN++  + LDSRI +VGPNG GK+T+LKL+ G+L+P+SG + +  ++R
Sbjct:   536 VAFGYTKDKLLLKNVDLDVQLDSRIGIVGPNGAGKTTVLKLLTGQLEPTSGLMSQHPRLR 595

Query:   121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQK 180
             I  F+QHHVD LDL+++ + +M + +PG  +++ R HLG+FG+TG   LQ M  LSGGQK
Sbjct:   596 IGYFAQHHVDALDLTTSAVSFMAKTYPGKTDEEYRRHLGAFGITGMTGLQRMELLSGGQK 655

Query:   181 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEE 240
             SRVAFA ++   PHI++LDEPSNHLD++ ++AL + L  F+GG++MVSHD  ++      
Sbjct:   656 SRVAFACLSLTNPHILVLDEPSNHLDIEGMDALSEALQKFEGGVVMVSHDVTMLRNVCTS 715

Query:   241 LWVVSEGKATPFHGTFHDYKKMLQSR 266
             LWV  +G    F GT   YKK + ++
Sbjct:   716 LWVCDKGTVQKFDGTVDAYKKKISAQ 741

GO:0006448 "regulation of translational elongation" evidence=IEA

GO:0022626 "cytosolic ribosome" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

CGD|CAL0005158 GCN20 [Candida albicans (taxid:5476)]

 Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
 Identities = 127/266 (47%), Positives = 175/266 (65%)

Query:     1 MQSFIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSD 60
             +Q FIDKFRYNA RA   QSRIK LE++  ++   ++    F+F  PD    P I+   D
Sbjct:   477 LQEFIDKFRYNAARAQEAQSRIKKLEKLPVLEPPEDEKTVTFKFAEPDSISAP-ILQLQD 535

Query:    61 ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR 120
              SFGY    +LFK++N  + +DSRIA  G NG GK+T+LKL+  +L P+SG V ++ ++R
Sbjct:   536 VSFGYDTNKMLFKDVNLDVQMDSRIAFCGGNGTGKTTLLKLVMDQLSPTSGYVNKNGRLR 595

Query:   121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQK 180
             I  F+QHHVD +DL+ + + +M + FPG  +++ R HLGSFG+TG+L LQ M  LSGGQK
Sbjct:   596 IGYFAQHHVDAMDLTLSAVSWMSQAFPGKTDEEYRRHLGSFGITGSLGLQKMQLLSGGQK 655

Query:   181 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEE 240
             SRVAFA +   +PHI++LDEPSNHLD   ++AL   L  F+GG+LMVSHD  +I     E
Sbjct:   656 SRVAFAALCLNQPHILVLDEPSNHLDTQGLDALADALKNFKGGVLMVSHDVSIIDRVCNE 715

Query:   241 LWVVSEGKATPFHGTFHDYKK-MLQS 265
             +WV        F G  + YKK +L+S
Sbjct:   716 IWVAENNTIFKFPGDIYAYKKHILES 741

GO:0005524 "ATP binding" evidence=ISS

GO:0022626 "cytosolic ribosome" evidence=IEA

GO:0006448 "regulation of translational elongation" evidence=IEA

UNIPROTKB|Q5ABB0 GCN20 "ATP-binding cassette protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
 Identities = 127/266 (47%), Positives = 175/266 (65%)

Query:     1 MQSFIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSD 60
             +Q FIDKFRYNA RA   QSRIK LE++  ++   ++    F+F  PD    P I+   D
Sbjct:   477 LQEFIDKFRYNAARAQEAQSRIKKLEKLPVLEPPEDEKTVTFKFAEPDSISAP-ILQLQD 535

Query:    61 ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR 120
              SFGY    +LFK++N  + +DSRIA  G NG GK+T+LKL+  +L P+SG V ++ ++R
Sbjct:   536 VSFGYDTNKMLFKDVNLDVQMDSRIAFCGGNGTGKTTLLKLVMDQLSPTSGYVNKNGRLR 595

Query:   121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQK 180
             I  F+QHHVD +DL+ + + +M + FPG  +++ R HLGSFG+TG+L LQ M  LSGGQK
Sbjct:   596 IGYFAQHHVDAMDLTLSAVSWMSQAFPGKTDEEYRRHLGSFGITGSLGLQKMQLLSGGQK 655

Query:   181 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEE 240
             SRVAFA +   +PHI++LDEPSNHLD   ++AL   L  F+GG+LMVSHD  +I     E
Sbjct:   656 SRVAFAALCLNQPHILVLDEPSNHLDTQGLDALADALKNFKGGVLMVSHDVSIIDRVCNE 715

Query:   241 LWVVSEGKATPFHGTFHDYKK-MLQS 265
             +WV        F G  + YKK +L+S
Sbjct:   716 IWVAENNTIFKFPGDIYAYKKHILES 741

GO:0005524 "ATP binding" evidence=ISS

UNIPROTKB|G4NB88 MGG_11547 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 647 (232.8 bits), Expect = 2.0e-63, P = 2.0e-63
 Identities = 125/267 (46%), Positives = 178/267 (66%)

Query:     1 MQSFIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPD-DRPGPPIISFS 59
             +Q+FIDKFRYNA ++S  QSRIK LERM  ++    + +Y   F  PD ++  PPI+  S
Sbjct:   476 LQAFIDKFRYNAAKSSEAQSRIKKLERMPVLEPP--EAEYSVHFRFPDVEKLSPPIVQMS 533

Query:    60 DASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV 119
             + +FGY    IL +N++  + LDSRI +VGPNG GK+T+LKL+  +L P+SG + +  ++
Sbjct:   534 EVTFGYTPDNILLRNVDLDVQLDSRIGIVGPNGAGKTTVLKLLISKLTPTSGIISQHPRL 593

Query:   120 RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQ 179
             RI  F+QHHVD LDL+ + + +M + +PG  +++ R  LG+FG+TG   LQ M  LSGGQ
Sbjct:   594 RIGFFAQHHVDALDLTVSAVSFMAKTYPGRTDEEYRRQLGAFGITGTTGLQKMEVLSGGQ 653

Query:   180 KSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVE 239
             KSRVAFA +    PHI++LDEPSNHLD++A++AL   L  FQGG+LMVSHD  ++     
Sbjct:   654 KSRVAFACLALTNPHILVLDEPSNHLDIEAMDALADALNQFQGGVLMVSHDVTMLQTVCT 713

Query:   240 ELWVVSEGKATPFHGTFHDYKKMLQSR 266
              LWV   G    F+G    YKK + ++
Sbjct:   714 SLWVCDGGTVEKFNGDVQAYKKRIAAQ 740

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1351656 Abcf3 "ATP-binding cassette, sub-family F (GCN20), member 3" [Mus musculus (taxid:10090)]

 Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
 Identities = 119/266 (44%), Positives = 173/266 (65%)

Query:     1 MQSFIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSD 60
             +Q FID+FRYNA RAS VQS++K LE++  +  V  + +   +FP   ++  PPI+   +
Sbjct:   437 IQVFIDRFRYNANRASQVQSKLKMLEKLPELKPVDKESEVVLKFPDGFEKFSPPILQLDE 496

Query:    61 ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR 120
               F Y     +F  L+   DL+SRI +VG NG GKST+LKL+ G+L P  G       ++
Sbjct:   497 VDFYYDPKHSIFSRLSVSADLESRICVVGENGAGKSTMLKLLMGDLSPVRGIRHAHRNLK 556

Query:   121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQK 180
             I  FSQHHV+ LDL+ + +  + R FPG+PE++ R  LG +G++G LA++P+ +LSGGQK
Sbjct:   557 IGYFSQHHVEQLDLNVSAVELLARKFPGLPEEEYRHQLGRYGISGELAMRPVASLSGGQK 616

Query:   181 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEE 240
             SRVAFA++T   P+  +LDEP+NHLD++ +EAL Q L  F+GG+++VSHDE  I    +E
Sbjct:   617 SRVAFAQMTMPCPNFYILDEPTNHLDMETIEALGQALNNFRGGVILVSHDERFIRLVCKE 676

Query:   241 LWVVSEGKATPFHGTFHDYKKMLQSR 266
             LWV   G  T   G F  Y+ +LQ +
Sbjct:   677 LWVCENGSVTRVEGGFDQYRALLQEQ 702

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0051607 "defense response to virus" evidence=IEA

WB|WBGene00018339 abcf-3 [Caenorhabditis elegans (taxid:6239)]

 Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
 Identities = 123/263 (46%), Positives = 175/263 (66%)

Query:     2 QSFIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSDA 61
             Q FIDKFRYNAKRA +VQSRIK LE++  +  V  + D  F+FP  +    P ++   + 
Sbjct:   443 QEFIDKFRYNAKRAPMVQSRIKMLEKLPVLLPVELESDIHFKFPECEVLSNP-VLQLDEV 501

Query:    62 SFGY-PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR 120
             SF Y    P LF+ LN G   +SRI +VG NG GK+T+LKL+  +LQPS G    + ++R
Sbjct:   502 SFRYNEDSPYLFRKLNLGTHANSRICIVGENGAGKTTLLKLLLDDLQPSVGLRNVNRRIR 561

Query:   121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQK 180
             IA F+QHHVD LD+ ++ +  +M+  PG  ++  RA LG FG+ G++ALQ + TLSGGQK
Sbjct:   562 IAYFTQHHVDQLDMETSAIEVLMKNHPGKTQEDYRAALGRFGLAGDMALQSVETLSGGQK 621

Query:   181 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEE 240
             SR+AFA +   +P+ ++LDEP+NHLD++ VEAL + L +F GG+++VSHDE LI    +E
Sbjct:   622 SRLAFANLALMQPNYLILDEPTNHLDVETVEALGKALNVFNGGVVLVSHDEQLIELVCKE 681

Query:   241 LWVVSEGKATPFHGTFHDYKKML 263
             LWVV +   T   G   +Y+K +
Sbjct:   682 LWVVKDRMVTTLEGGLEEYRKQV 704

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8H0V6	AB3F_ARATH	No assigned EC number	0.9094	0.9962	0.3706	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	266
PLN03073	718	PLN03073, PLN03073, ABC transporter F family; Prov	0.0
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	1e-95
PRK10636	638	PRK10636, PRK10636, putative ABC transporter ATP-b	8e-70
cd03221	144	cd03221, ABCF_EF-3, ATP-binding cassette domain of	2e-54
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	3e-47
PRK15064	530	PRK15064, PRK15064, ABC transporter ATP-binding pr	2e-45
PRK11147	635	PRK11147, PRK11147, ABC transporter ATPase compone	2e-32
cd03214	180	cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind	7e-32
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	2e-31
COG1120	258	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore	1e-30
cd03235	213	cd03235, ABC_Metallic_Cations, ATP-binding cassett	2e-30
cd03225	211	cd03225, ABC_cobalt_CbiO_domain1, First domain of	4e-30
COG1121	254	COG1121, ZnuC, ABC-type Mn/Zn transport systems, A	5e-30
COG1122	235	COG1122, CbiO, ABC-type cobalt transport system, A	8e-30
cd03228	171	cd03228, ABCC_MRP_Like, ATP-binding cassette domai	2e-28
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	9e-28
cd03246	173	cd03246, ABCC_Protease_Secretion, ATP-binding cass	4e-26
TIGR02868	530	TIGR02868, CydC, thiol reductant ABC exporter, Cyd	3e-25
TIGR01166	190	TIGR01166, cbiO, cobalt transport protein ATP-bind	6e-25
cd03230	173	cd03230, ABC_DR_subfamily_A, ATP-binding cassette	2e-24
PRK11819	556	PRK11819, PRK11819, putative ABC transporter ATP-b	2e-24
COG1136	226	COG1136, SalX, ABC-type antimicrobial peptide tran	3e-24
COG3638	258	COG3638, COG3638, ABC-type phosphate/phosphonate t	3e-24
COG4988	559	COG4988, CydD, ABC-type transport system involved	1e-23
cd03255	218	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse	3e-23
cd03261	235	cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca	3e-23
COG1119	257	COG1119, ModF, ABC-type molybdenum transport syste	1e-22
TIGR02857	529	TIGR02857, CydD, thiol reductant ABC exporter, Cyd	1e-22
PRK09544	251	PRK09544, znuC, high-affinity zinc transporter ATP	1e-21
COG1116	248	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon	1e-21
COG2274	709	COG2274, SunT, ABC-type bacteriocin/lantibiotic ex	3e-21
TIGR03873	256	TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra	3e-21
cd03247	178	cd03247, ABCC_cytochrome_bd, ATP-binding cassette	3e-21
PRK13539	207	PRK13539, PRK13539, cytochrome c biogenesis protei	6e-21
cd03226	205	cd03226, ABC_cobalt_CbiO_domain2, Second domain of	8e-21
TIGR03375	694	TIGR03375, type_I_sec_LssB, type I secretion syste	2e-20
COG4133	209	COG4133, CcmA, ABC-type transport system involved	2e-20
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	4e-20
cd03293	220	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c	7e-20
cd03229	178	cd03229, ABC_Class3, ATP-binding cassette domain o	7e-20
COG1134	249	COG1134, TagH, ABC-type polysaccharide/polyol phos	7e-20
PRK11147	635	PRK11147, PRK11147, ABC transporter ATPase compone	1e-19
pfam00005	119	pfam00005, ABC_tran, ABC transporter	2e-19
cd03245	220	cd03245, ABCC_bacteriocin_exporters, ATP-binding c	2e-19
COG1131	293	COG1131, CcmA, ABC-type multidrug transport system	3e-19
COG1127	263	COG1127, Ttg2A, ABC-type transport system involved	4e-19
cd03259	213	cd03259, ABC_Carb_Solutes_like, ATP-binding casset	1e-18
TIGR03608	206	TIGR03608, L_ocin_972_ABC, putative bacteriocin ex	2e-18
COG1124	252	COG1124, DppF, ABC-type dipeptide/oligopeptide/nic	2e-18
PRK13639	275	PRK13639, cbiO, cobalt transporter ATP-binding sub	2e-18
cd03253	236	cd03253, ABCC_ATM1_transporter, ATP-binding casset	6e-18
COG2884	223	COG2884, FtsE, Predicted ATPase involved in cell d	7e-18
COG4987	573	COG4987, CydC, ABC-type transport system involved	8e-18
TIGR02315	243	TIGR02315, ABC_phnC, phosphonate ABC transporter,	1e-17
TIGR01189	198	TIGR01189, ccmA, heme ABC exporter, ATP-binding pr	1e-17
cd03256	241	cd03256, ABC_PhnC_transporter, ATP-binding cassett	1e-17
cd03297	214	cd03297, ABC_ModC_molybdenum_transporter, ATP-bind	1e-17
cd03220	224	cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon	2e-17
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	3e-17
cd03223	166	cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset	3e-17
cd03292	214	cd03292, ABC_FtsE_transporter, ATP-binding cassett	9e-17
cd03263	220	cd03263, ABC_subfamily_A, ATP-binding cassette dom	1e-16
COG3842	352	COG3842, PotA, ABC-type spermidine/putrescine tran	2e-16
COG4586	325	COG4586, COG4586, ABC-type uncharacterized transpo	2e-16
cd03267	236	cd03267, ABC_NatA_like, ATP-binding cassette domai	3e-16
COG4178	604	COG4178, COG4178, ABC-type uncharacterized transpo	3e-16
TIGR02673	214	TIGR02673, FtsE, cell division ATP-binding protein	3e-16
cd03251	234	cd03251, ABCC_MsbA, ATP-binding cassette domain of	3e-16
PRK13636	283	PRK13636, cbiO, cobalt transporter ATP-binding sub	3e-16
PRK13538	204	PRK13538, PRK13538, cytochrome c biogenesis protei	5e-16
cd03219	236	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas	9e-16
TIGR01277	213	TIGR01277, thiQ, thiamine ABC transporter, ATP-bin	2e-15
COG1118	345	COG1118, CysA, ABC-type sulfate/molybdate transpor	3e-15
COG3839	338	COG3839, MalK, ABC-type sugar transport systems, A	3e-15
PRK13548	258	PRK13548, hmuV, hemin importer ATP-binding subunit	3e-15
cd03231	201	cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog	7e-15
COG4181	228	COG4181, COG4181, Predicted ABC-type transport sys	7e-15
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	8e-15
TIGR02982	220	TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi	8e-15
COG5265	497	COG5265, ATM1, ABC-type transport system involved	9e-15
COG3840	231	COG3840, ThiQ, ABC-type thiamine transport system,	1e-14
COG0411	250	COG0411, LivG, ABC-type branched-chain amino acid	1e-14
cd03248	226	cd03248, ABCC_TAP, ATP-binding cassette domain of	1e-14
cd03291	282	cd03291, ABCC_CFTR1, ATP-binding cassette domain o	1e-14
PRK13536	340	PRK13536, PRK13536, nodulation factor exporter sub	1e-14
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	2e-14
TIGR00958	711	TIGR00958, 3a01208, Conjugate Transporter-2 (CT2)	2e-14
PRK09536	402	PRK09536, btuD, corrinoid ABC transporter ATPase;	3e-14
PRK13647	274	PRK13647, cbiO, cobalt transporter ATP-binding sub	4e-14
TIGR03740	223	TIGR03740, galliderm_ABC, gallidermin-class lantib	4e-14
PRK10253	265	PRK10253, PRK10253, iron-enterobactin transporter	4e-14
PRK13543	214	PRK13543, PRK13543, cytochrome c biogenesis protei	5e-14
cd03216	163	cd03216, ABC_Carb_Monos_I, First domain of the ATP	6e-14
PRK13648	269	PRK13648, cbiO, cobalt transporter ATP-binding sub	6e-14
COG1123	539	COG1123, COG1123, ATPase components of various ABC	6e-14
PRK11819	556	PRK11819, PRK11819, putative ABC transporter ATP-b	7e-14
PRK13632	271	PRK13632, cbiO, cobalt transporter ATP-binding sub	7e-14
PRK13652	277	PRK13652, cbiO, cobalt transporter ATP-binding sub	8e-14
TIGR01288	303	TIGR01288, nodI, ATP-binding ABC transporter famil	8e-14
cd03298	211	cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin	1e-13
cd03264	211	cd03264, ABC_drug_resistance_like, ABC-type multid	1e-13
PRK10908	222	PRK10908, PRK10908, cell division protein FtsE; Pr	1e-13
PRK11160	574	PRK11160, PRK11160, cysteine/glutathione ABC trans	1e-13
COG1135	339	COG1135, AbcC, ABC-type metal ion transport system	1e-13
COG4559	259	COG4559, COG4559, ABC-type hemin transport system,	2e-13
COG4619	223	COG4619, COG4619, ABC-type uncharacterized transpo	2e-13
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	2e-13
TIGR02204	576	TIGR02204, MsbA_rel, ABC transporter, permease/ATP	2e-13
TIGR01193	708	TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t	2e-13
cd03237	246	cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin	2e-13
PRK13640	282	PRK13640, cbiO, cobalt transporter ATP-binding sub	3e-13
cd03295	242	cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas	3e-13
cd03224	222	cd03224, ABC_TM1139_LivF_branched, ATP-binding cas	4e-13
PRK11629	233	PRK11629, lolD, lipoprotein transporter ATP-bindin	4e-13
PRK10247	225	PRK10247, PRK10247, putative ABC transporter ATP-b	5e-13
TIGR01271	1490	TIGR01271, CFTR_protein, cystic fibrosis transmemb	5e-13
TIGR01184	230	TIGR01184, ntrCD, nitrate transport ATP-binding su	8e-13
TIGR03771	223	TIGR03771, anch_rpt_ABC, anchored repeat-type ABC	2e-12
cd03257	228	cd03257, ABC_NikE_OppD_transporters, ATP-binding c	2e-12
TIGR02211	221	TIGR02211, LolD_lipo_ex, lipoprotein releasing sys	2e-12
PRK11231	255	PRK11231, fecE, iron-dicitrate transporter ATP-bin	2e-12
PRK11248	255	PRK11248, tauB, taurine transporter ATP-binding su	2e-12
PRK10771	232	PRK10771, thiQ, thiamine transporter ATP-binding s	2e-12
PRK13537	306	PRK13537, PRK13537, nodulation ABC transporter Nod	2e-12
PRK13641	287	PRK13641, cbiO, cobalt transporter ATP-binding sub	2e-12
TIGR01842	544	TIGR01842, type_I_sec_PrtD, type I secretion syste	2e-12
COG1125	309	COG1125, OpuBA, ABC-type proline/glycine betaine t	3e-12
COG4136	213	COG4136, COG4136, ABC-type uncharacterized transpo	3e-12
PRK14250	241	PRK14250, PRK14250, phosphate ABC transporter ATP-	4e-12
TIGR01846	694	TIGR01846, type_I_sec_HlyB, type I secretion syste	4e-12
cd03301	213	cd03301, ABC_MalK_N, The N-terminal ATPase domain	4e-12
TIGR03797	686	TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste	4e-12
COG4525	259	COG4525, TauB, ABC-type taurine transport system,	4e-12
cd03369	207	cd03369, ABCC_NFT1, ATP-binding cassette domain 2	5e-12
cd03299	235	cd03299, ABC_ModC_like, ATP-binding cassette domai	5e-12
PRK09452	375	PRK09452, potA, putrescine/spermidine ABC transpor	5e-12
TIGR01188	302	TIGR01188, drrA, daunorubicin resistance ABC trans	8e-12
TIGR03864	236	TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi	8e-12
PRK13635	279	PRK13635, cbiO, cobalt transporter ATP-binding sub	8e-12
COG0410	237	COG0410, LivF, ABC-type branched-chain amino acid	1e-11
cd03260	227	cd03260, ABC_PstB_phosphate_transporter, ATP-bindi	1e-11
PRK13646	286	PRK13646, cbiO, cobalt transporter ATP-binding sub	1e-11
TIGR01187	325	TIGR01187, potA, spermidine/putrescine ABC transpo	1e-11
cd03217	200	cd03217, ABC_FeS_Assembly, ABC-type transport syst	1e-11
TIGR03796	710	TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste	2e-11
PRK11607	377	PRK11607, potG, putrescine transporter ATP-binding	2e-11
TIGR00968	237	TIGR00968, 3a0106s01, sulfate ABC transporter, ATP	2e-11
cd03300	232	cd03300, ABC_PotA_N, ATP-binding cassette domain o	2e-11
PRK13633	280	PRK13633, PRK13633, cobalt transporter ATP-binding	2e-11
cd03252	237	cd03252, ABCC_Hemolysin, ATP-binding cassette doma	2e-11
cd03218	232	cd03218, ABC_YhbG, ATP-binding cassette component	2e-11
COG1126	240	COG1126, GlnQ, ABC-type polar amino acid transport	3e-11
TIGR02203	571	TIGR02203, MsbA_lipidA, lipid A export permease/AT	3e-11
cd03262	213	cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai	3e-11
pfam12848	85	pfam12848, ABC_tran_2, ABC transporter	4e-11
cd03265	220	cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist	5e-11
cd03266	218	cd03266, ABC_NatA_sodium_exporter, ATP-binding cas	6e-11
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	6e-11
PRK13540	200	PRK13540, PRK13540, cytochrome c biogenesis protei	7e-11
COG4555	245	COG4555, NatA, ABC-type Na+ transport system, ATPa	7e-11
PRK11247	257	PRK11247, ssuB, aliphatic sulfonates transport ATP	7e-11
PRK03695	248	PRK03695, PRK03695, vitamin B12-transporter ATPase	8e-11
TIGR02324	224	TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys	8e-11
cd03268	208	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c	8e-11
COG4674	249	COG4674, COG4674, Uncharacterized ABC-type transpo	9e-11
COG1101	263	COG1101, PhnK, ABC-type uncharacterized transport	1e-10
TIGR00954	659	TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra	1e-10
COG4107	258	COG4107, PhnK, ABC-type phosphonate transport syst	3e-10
PRK13649	280	PRK13649, cbiO, cobalt transporter ATP-binding sub	3e-10
cd03236	255	cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin	3e-10
PRK09984	262	PRK09984, PRK09984, phosphonate/organophosphate es	3e-10
PRK11300	255	PRK11300, livG, leucine/isoleucine/valine transpor	3e-10
PRK13638	271	PRK13638, cbiO, cobalt transporter ATP-binding sub	4e-10
PRK11174	588	PRK11174, PRK11174, cysteine/glutathione ABC trans	4e-10
cd03296	239	cd03296, ABC_CysA_sulfate_importer, ATP-binding ca	6e-10
PRK11831	269	PRK11831, PRK11831, putative ABC transporter ATP-b	7e-10
TIGR02323	253	TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys	9e-10
COG4608	268	COG4608, AppF, ABC-type oligopeptide transport sys	1e-09
PRK13637	287	PRK13637, cbiO, cobalt transporter ATP-binding sub	1e-09
PLN03073	718	PLN03073, PLN03073, ABC transporter F family; Prov	2e-09
cd03254	229	cd03254, ABCC_Glucan_exporter_like, ATP-binding ca	2e-09
PRK11432	351	PRK11432, fbpC, ferric transporter ATP-binding sub	2e-09
smart00382	148	smart00382, AAA, ATPases associated with a variety	2e-09
cd03258	233	cd03258, ABC_MetN_methionine_transporter, ATP-bind	2e-09
TIGR03522	301	TIGR03522, GldA_ABC_ATP, gliding motility-associat	2e-09
TIGR02142	354	TIGR02142, modC_ABC, molybdenum ABC transporter, A	2e-09
PRK10636	638	PRK10636, PRK10636, putative ABC transporter ATP-b	4e-09
PRK13634	290	PRK13634, cbiO, cobalt transporter ATP-binding sub	4e-09
cd03213	194	cd03213, ABCG_EPDR, Eye pigment and drug resistanc	4e-09
COG1137	243	COG1137, YhbG, ABC-type (unclassified) transport s	4e-09
TIGR03411	242	TIGR03411, urea_trans_UrtD, urea ABC transporter,	4e-09
TIGR03258	362	TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans	4e-09
cd03250	204	cd03250, ABCC_MRP_domain1, ATP-binding cassette do	5e-09
PRK11264	250	PRK11264, PRK11264, putative amino-acid ABC transp	5e-09
cd03249	238	cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett	7e-09
COG4615	546	COG4615, PvdE, ABC-type siderophore export system,	7e-09
COG4604	252	COG4604, CeuD, ABC-type enterochelin transport sys	8e-09
PRK13643	288	PRK13643, cbiO, cobalt transporter ATP-binding sub	9e-09
COG4167	267	COG4167, SapF, ABC-type antimicrobial peptide tran	1e-08
PRK13547	272	PRK13547, hmuV, hemin importer ATP-binding subunit	2e-08
PLN03232	1495	PLN03232, PLN03232, ABC transporter C family membe	2e-08
PRK13644	274	PRK13644, cbiO, cobalt transporter ATP-binding sub	2e-08
COG4148	352	COG4148, ModC, ABC-type molybdate transport system	2e-08
cd03222	177	cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett	2e-08
PRK15112	267	PRK15112, PRK15112, antimicrobial peptide ABC syst	3e-08
COG4152	300	COG4152, COG4152, ABC-type uncharacterized transpo	3e-08
cd03244	221	cd03244, ABCC_MRP_domain2, ATP-binding cassette do	3e-08
PRK11000	369	PRK11000, PRK11000, maltose/maltodextrin transport	5e-08
PRK13545	549	PRK13545, tagH, teichoic acids export protein ATP-	7e-08
COG4618	580	COG4618, ArpD, ABC-type protease/lipase transport	7e-08
PRK10535	648	PRK10535, PRK10535, macrolide transporter ATP-bind	7e-08
PRK10851	353	PRK10851, PRK10851, sulfate/thiosulfate transporte	8e-08
TIGR01192	585	TIGR01192, chvA, glucan exporter ATP-binding prote	9e-08
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	9e-08
TIGR02770	230	TIGR02770, nickel_nikD, nickel import ATP-binding	9e-08
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	1e-07
cd03269	210	cd03269, ABC_putative_ATPase, ATP-binding cassette	1e-07
TIGR01186	363	TIGR01186, proV, glycine betaine/L-proline transpo	1e-07
COG4778	235	COG4778, PhnL, ABC-type phosphonate transport syst	1e-07
PRK15064	530	PRK15064, PRK15064, ABC transporter ATP-binding pr	2e-07
PRK11288	501	PRK11288, araG, L-arabinose transporter ATP-bindin	2e-07
PRK10522	547	PRK10522, PRK10522, multidrug transporter membrane	2e-07
PRK14239	252	PRK14239, PRK14239, phosphate transporter ATP-bind	2e-07
PRK11701	258	PRK11701, phnK, phosphonate C-P lyase system prote	2e-07
PRK15064	530	PRK15064, PRK15064, ABC transporter ATP-binding pr	3e-07
cd03249	238	cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett	3e-07
TIGR03005	252	TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB	3e-07
PRK14246	257	PRK14246, PRK14246, phosphate ABC transporter ATP-	3e-07
PRK11650	356	PRK11650, ugpC, glycerol-3-phosphate transporter A	3e-07
COG4138	248	COG4138, BtuD, ABC-type cobalamin transport system	3e-07
PRK13541	195	PRK13541, PRK13541, cytochrome c biogenesis protei	3e-07
PRK15439	510	PRK15439, PRK15439, autoinducer 2 ABC transporter	3e-07
TIGR02314	343	TIGR02314, ABC_MetN, D-methionine ABC transporter,	3e-07
PRK14244	251	PRK14244, PRK14244, phosphate ABC transporter ATP-	4e-07
COG4618	580	COG4618, ArpD, ABC-type protease/lipase transport	5e-07
PRK14268	258	PRK14268, PRK14268, phosphate ABC transporter ATP-	5e-07
cd03240	204	cd03240, ABC_Rad50, ATP-binding cassette domain of	6e-07
cd03289	275	cd03289, ABCC_CFTR2, ATP-binding cassette domain 2	6e-07
TIGR03410	230	TIGR03410, urea_trans_UrtE, urea ABC transporter,	7e-07
COG2401	593	COG2401, COG2401, ABC-type ATPase fused to a predi	8e-07
PRK11144	352	PRK11144, modC, molybdate transporter ATP-binding	8e-07
PRK13546	264	PRK13546, PRK13546, teichoic acids export protein	1e-06
PRK14255	252	PRK14255, PRK14255, phosphate ABC transporter ATP-	1e-06
COG0444	316	COG0444, DppD, ABC-type dipeptide/oligopeptide/nic	1e-06
cd03290	218	cd03290, ABCC_SUR1_N, ATP-binding cassette domain	1e-06
TIGR02769	265	TIGR02769, nickel_nikE, nickel import ATP-binding	2e-06
PRK14238	271	PRK14238, PRK14238, phosphate transporter ATP-bind	2e-06
PRK11176	582	PRK11176, PRK11176, lipid transporter ATP-binding/	2e-06
PLN03130	1622	PLN03130, PLN03130, ABC transporter C family membe	2e-06
cd03238	176	cd03238, ABC_UvrA, ATP-binding cassette domain of	2e-06
COG4161	242	COG4161, ArtP, ABC-type arginine transport system,	2e-06
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	3e-06
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	3e-06
PRK10938	490	PRK10938, PRK10938, putative molybdenum transport	3e-06
TIGR00972	247	TIGR00972, 3a0107s01c2, phosphate ABC transporter,	3e-06
TIGR00957	1522	TIGR00957, MRP_assoc_pro, multi drug resistance-as	3e-06
cd03234	226	cd03234, ABCG_White, White pigment protein homolog	4e-06
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	4e-06
PRK14253	249	PRK14253, PRK14253, phosphate ABC transporter ATP-	4e-06
PRK13651	305	PRK13651, PRK13651, cobalt transporter ATP-binding	4e-06
PRK10261	623	PRK10261, PRK10261, glutathione transporter ATP-bi	4e-06
PRK10419	268	PRK10419, nikE, nickel transporter ATP-binding pro	4e-06
COG1123	539	COG1123, COG1123, ATPase components of various ABC	5e-06
PRK15056	272	PRK15056, PRK15056, manganese/iron transporter ATP	5e-06
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	5e-06
PRK10790	592	PRK10790, PRK10790, putative multidrug transporter	5e-06
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	5e-06
TIGR01271	1490	TIGR01271, CFTR_protein, cystic fibrosis transmemb	6e-06
cd03250	204	cd03250, ABCC_MRP_domain1, ATP-binding cassette do	6e-06
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	6e-06
PRK11153	343	PRK11153, metN, DL-methionine transporter ATP-bind	6e-06
PRK11819	556	PRK11819, PRK11819, putative ABC transporter ATP-b	7e-06
PLN03211	659	PLN03211, PLN03211, ABC transporter G-25; Provisio	7e-06
PRK10584	228	PRK10584, PRK10584, putative ABC transporter ATP-b	7e-06
PRK14258	261	PRK14258, PRK14258, phosphate ABC transporter ATP-	7e-06
PRK11614	237	PRK11614, livF, leucine/isoleucine/valine transpor	9e-06
TIGR01978	243	TIGR01978, sufC, FeS assembly ATPase SufC	1e-05
PRK14262	250	PRK14262, PRK14262, phosphate ABC transporter ATP-	1e-05
PRK14272	252	PRK14272, PRK14272, phosphate ABC transporter ATP-	1e-05
PRK10619	257	PRK10619, PRK10619, histidine/lysine/arginine/orni	2e-05
PRK13657	588	PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra	2e-05
PRK13650	279	PRK13650, cbiO, cobalt transporter ATP-binding sub	2e-05
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	2e-05
PRK14245	250	PRK14245, PRK14245, phosphate ABC transporter ATP-	3e-05
PRK09493	240	PRK09493, glnQ, glutamine ABC transporter ATP-bind	3e-05
PRK10575	265	PRK10575, PRK10575, iron-hydroxamate transporter A	3e-05
PRK14252	265	PRK14252, PRK14252, phosphate ABC transporter ATP-	3e-05
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	5e-05
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	6e-05
PRK14266	250	PRK14266, PRK14266, phosphate ABC transporter ATP-	6e-05
TIGR03265	353	TIGR03265, PhnT2, putative 2-aminoethylphosphonate	6e-05
COG0396	251	COG0396, sufC, Cysteine desulfurase activator ATPa	6e-05
cd03215	182	cd03215, ABC_Carb_Monos_II, Second domain of the A	6e-05
PRK13642	277	PRK13642, cbiO, cobalt transporter ATP-binding sub	7e-05
cd03294	269	cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette	8e-05
PRK14275	286	PRK14275, PRK14275, phosphate ABC transporter ATP-	8e-05
PRK14274	259	PRK14274, PRK14274, phosphate ABC transporter ATP-	9e-05
PLN03232	1495	PLN03232, PLN03232, ABC transporter C family membe	1e-04
PRK14248	268	PRK14248, PRK14248, phosphate ABC transporter ATP-	1e-04
PRK14273	254	PRK14273, PRK14273, phosphate ABC transporter ATP-	1e-04
PRK13645	289	PRK13645, cbiO, cobalt transporter ATP-binding sub	1e-04
COG4598	256	COG4598, HisP, ABC-type histidine transport system	1e-04
PRK13631	320	PRK13631, cbiO, cobalt transporter ATP-binding sub	1e-04
PRK14271	276	PRK14271, PRK14271, phosphate ABC transporter ATP-	1e-04
PRK11124	242	PRK11124, artP, arginine transporter ATP-binding s	1e-04
PRK14257	329	PRK14257, PRK14257, phosphate ABC transporter ATP-	2e-04
PRK14237	267	PRK14237, PRK14237, phosphate transporter ATP-bind	2e-04
PRK14243	264	PRK14243, PRK14243, phosphate transporter ATP-bind	2e-04
COG1117	253	COG1117, PstB, ABC-type phosphate transport system	2e-04
PRK14259	269	PRK14259, PRK14259, phosphate ABC transporter ATP-	2e-04
PRK10895	241	PRK10895, PRK10895, lipopolysaccharide ABC transpo	2e-04
PRK10744	260	PRK10744, pstB, phosphate transporter ATP-binding	3e-04
TIGR00955	617	TIGR00955, 3a01204, The Eye Pigment Precursor Tran	3e-04
PRK10982	491	PRK10982, PRK10982, galactose/methyl galaxtoside t	4e-04
PRK14254	285	PRK14254, PRK14254, phosphate ABC transporter ATP-	4e-04
PRK14249	251	PRK14249, PRK14249, phosphate ABC transporter ATP-	4e-04
TIGR00630	925	TIGR00630, uvra, excinuclease ABC, A subunit	4e-04
PTZ00243	1560	PTZ00243, PTZ00243, ABC transporter; Provisional	5e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	6e-04
PRK14267	253	PRK14267, PRK14267, phosphate ABC transporter ATP-	6e-04
PRK14256	252	PRK14256, PRK14256, phosphate ABC transporter ATP-	6e-04
PRK14269	246	PRK14269, PRK14269, phosphate ABC transporter ATP-	7e-04
TIGR02633	500	TIGR02633, xylG, D-xylose ABC transporter, ATP-bin	7e-04
PRK10789	569	PRK10789, PRK10789, putative multidrug transporter	8e-04
PRK10636	638	PRK10636, PRK10636, putative ABC transporter ATP-b	0.001
PRK15439	510	PRK15439, PRK15439, autoinducer 2 ABC transporter	0.001
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	0.001
pfam13304	256	pfam13304, AAA_21, AAA domain	0.001
PRK00635	1809	PRK00635, PRK00635, excinuclease ABC subunit A; Pr	0.001
PRK14251	251	PRK14251, PRK14251, phosphate ABC transporter ATP-	0.001
PRK14270	251	PRK14270, PRK14270, phosphate ABC transporter ATP-	0.001
PRK14235	267	PRK14235, PRK14235, phosphate transporter ATP-bind	0.001
CHL00131	252	CHL00131, ycf16, sulfate ABC transporter protein;	0.001
PRK09473	330	PRK09473, oppD, oligopeptide transporter ATP-bindi	0.001
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	0.002
cd03254	229	cd03254, ABCC_Glucan_exporter_like, ATP-binding ca	0.002
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	0.002
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	0.002
TIGR02633	500	TIGR02633, xylG, D-xylose ABC transporter, ATP-bin	0.002
PRK00635	1809	PRK00635, PRK00635, excinuclease ABC subunit A; Pr	0.002
PRK14247	250	PRK14247, PRK14247, phosphate ABC transporter ATP-	0.002
PRK14260	259	PRK14260, PRK14260, phosphate ABC transporter ATP-	0.002
PRK14240	250	PRK14240, PRK14240, phosphate transporter ATP-bind	0.002
PRK11022	326	PRK11022, dppD, dipeptide transporter ATP-binding	0.002
cd03271	261	cd03271, ABC_UvrA_II, ATP-binding cassette domain	0.002
PRK14261	253	PRK14261, PRK14261, phosphate ABC transporter ATP-	0.002
PRK14264	305	PRK14264, PRK14264, phosphate ABC transporter ATP-	0.002
PRK14236	272	PRK14236, PRK14236, phosphate transporter ATP-bind	0.002
PRK14241	258	PRK14241, PRK14241, phosphate transporter ATP-bind	0.003
PRK14265	274	PRK14265, PRK14265, phosphate ABC transporter ATP-	0.003
PRK10762	501	PRK10762, PRK10762, D-ribose transporter ATP bindi	0.003
PRK14242	253	PRK14242, PRK14242, phosphate transporter ATP-bind	0.004

>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional

 Score =  605 bits (1562), Expect = 0.0
 Identities = 253/265 (95%), Positives = 262/265 (98%)

Query: 1   MQSFIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSD 60
           MQ+FIDKFRYNAKRASLVQSRIKAL+R+GHVD VVNDPDYKFEFPTPDDRPGPPIISFSD
Sbjct: 454 MQAFIDKFRYNAKRASLVQSRIKALDRLGHVDAVVNDPDYKFEFPTPDDRPGPPIISFSD 513

Query: 61  ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR 120
           ASFGYPGGP+LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLI+GELQPSSGTVFRSAKVR
Sbjct: 514 ASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVR 573

Query: 121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQK 180
           +AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQK
Sbjct: 574 MAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQK 633

Query: 181 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEE 240
           SRVAFAKITFKKPHI+LLDEPSNHLDLDAVEALIQGLVLFQGG+LMVSHDEHLISGSV+E
Sbjct: 634 SRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISGSVDE 693

Query: 241 LWVVSEGKATPFHGTFHDYKKMLQS 265
           LWVVSEGK TPFHGTFHDYKK LQS
Sbjct: 694 LWVVSEGKVTPFHGTFHDYKKTLQS 718

Length = 718

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score =  290 bits (744), Expect = 1e-95
 Identities = 112/265 (42%), Positives = 161/265 (60%), Gaps = 6/265 (2%)

Query: 1   MQSFIDKFRYNAKRASLVQSRIKALERM--GHVDEVVNDPDY--KFEFPTPDDRPGPPII 56
            Q +I + +  A +A   +SRIK LE++     +E   +      F FP P  R G  ++
Sbjct: 263 EQEWIRRGKAAASKAKKAKSRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVL 322

Query: 57  SFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS 116
            F + S GY GG +L K+L+F ID   RIA+VGPNG GKST+LKL+AGEL P SGTV   
Sbjct: 323 EFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVG 382

Query: 117 AKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLS 176
             V+I  F QH  D LD     L  +   FP   EQ++RA+LG FG TG    +P+  LS
Sbjct: 383 ETVKIGYFDQHR-DELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLS 441

Query: 177 GGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISG 236
           GG+K+R+  AK+  + P+++LLDEP+NHLD++++EAL + L+ F+G +L+VSHD + +  
Sbjct: 442 GGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGTVLLVSHDRYFLDR 501

Query: 237 SVEELWVVSEGKATPFHGTFHDYKK 261
               +W+V E K   F G + DY +
Sbjct: 502 VATRIWLV-EDKVEEFEGGYEDYLE 525

Length = 530

>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional

 Score =  226 bits (577), Expect = 8e-70
 Identities = 108/268 (40%), Positives = 166/268 (61%), Gaps = 12/268 (4%)

Query: 1   MQSFIDKFRYNAKRASLVQSRIKALERM-----GHVDEVVNDPDYKFEFPTPDDRPGPPI 55
           +QS+ID+FR  A +A   QSRIK LERM      HVD    +P + F F  P+  P P +
Sbjct: 259 LQSYIDRFRAKATKAKQAQSRIKMLERMELIAPAHVD----NP-FHFSFRAPESLPNP-L 312

Query: 56  ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115
           +     S GY G  I+  ++   +   SRI ++G NG GKST++KL+AGEL P SG +  
Sbjct: 313 LKMEKVSAGY-GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGL 371

Query: 116 SAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTL 175
           +  +++  F+QH ++ L    +PL ++ R  P   EQKLR +LG FG  G+   +     
Sbjct: 372 AKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRF 431

Query: 176 SGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLIS 235
           SGG+K+R+  A I +++P+++LLDEP+NHLDLD  +AL + L+ F+G +++VSHD HL+ 
Sbjct: 432 SGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLR 491

Query: 236 GSVEELWVVSEGKATPFHGTFHDYKKML 263
            + ++L++V +GK  PF G   DY++ L
Sbjct: 492 STTDDLYLVHDGKVEPFDGDLEDYQQWL 519

Length = 638

>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F

 Score =  172 bits (438), Expect = 2e-54
 Identities = 64/193 (33%), Positives = 97/193 (50%), Gaps = 49/193 (25%)

Query: 56  ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115
           I   + S  Y GG +L K+++  I+   RI +VG NG GKST+LKLIAGEL+P  G V  
Sbjct: 1   IELENLSKTY-GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTW 59

Query: 116 SAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTL 175
            + V+I  F Q                                                L
Sbjct: 60  GSTVKIGYFEQ------------------------------------------------L 71

Query: 176 SGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLIS 235
           SGG+K R+A AK+  + P+++LLDEP+NHLDL+++EAL + L  + G +++VSHD + + 
Sbjct: 72  SGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYFLD 131

Query: 236 GSVEELWVVSEGK 248
               ++  + +GK
Sbjct: 132 QVATKIIELEDGK 144

Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score =  163 bits (416), Expect = 3e-47
 Identities = 68/244 (27%), Positives = 112/244 (45%), Gaps = 37/244 (15%)

Query: 53  PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGT 112
             +I+  + S  Y   P L +N++  ++   RI +VG NG GKST+LK++AGEL+P SG 
Sbjct: 1   MSMITLENLSLAYGDRP-LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGE 59

Query: 113 VFRSAKVRIAVFSQHHVDGLDLSS--------NPLLYMMRCFPGV--------------- 149
           V R   +R+   SQ      + +           L  ++                     
Sbjct: 60  VTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAEL 119

Query: 150 -----------PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILL 198
                       E +    L   G       +P+ +LSGG + RVA A+   ++P ++LL
Sbjct: 120 EALLEELDGWTLEARAEEALLGLGFPD--EDRPVSSLSGGWRRRVALARALLEEPDLLLL 177

Query: 199 DEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHD 258
           DEP+NHLDL+++E L   L  + G +++VSHD + +      +  +  GK TP+ G +  
Sbjct: 178 DEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSS 237

Query: 259 YKKM 262
           Y + 
Sbjct: 238 YLEQ 241

Length = 530

>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional

 Score =  159 bits (405), Expect = 2e-45
 Identities = 86/273 (31%), Positives = 149/273 (54%), Gaps = 17/273 (6%)

Query: 1   MQSFIDKFRYNAKRASLVQSRIKALERMGHVDEV-----VNDPDYKFEFPTPDDRPGPPI 55
           +QSF+ +F  NA +A    SR K ++++  ++EV      N P  +FE      R     
Sbjct: 265 LQSFVSRFSANASKAKQATSRAKQIDKI-KLEEVKPSSRQN-PFIRFEQDKKLHRN---A 319

Query: 56  ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115
           +   + + G+  GP LFKNLN  ++   R+A++G NG+GK+T+L+ + GEL+P SGTV  
Sbjct: 320 LEVENLTKGFDNGP-LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKW 378

Query: 116 SAKVRIAVFSQHHVDGLDLSSNPLLYMMRCF--PGVPEQKLRAHLGSFGVTGNLALQPMY 173
           S    I  ++Q H    +     L   M  +   G  EQ +R  LG    + +   + + 
Sbjct: 379 SENANIGYYAQDHAYDFENDLT-LFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVK 437

Query: 174 TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHL 233
            LSGG+K R+ F K+  +KP+++++DEP+NH+D++++E+L   L  ++G ++ VSHD   
Sbjct: 438 VLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKYEGTLIFVSHDREF 497

Query: 234 ISGSVEELWVVSEGKATPFHGTFHDYKKMLQSR 266
           +S     +  ++      F GT+ +Y   L+S+
Sbjct: 498 VSSLATRIIEITPDGVVDFSGTYEEY---LRSQ 527

Length = 530

>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed

 Score =  124 bits (314), Expect = 2e-32
 Identities = 77/268 (28%), Positives = 127/268 (47%), Gaps = 51/268 (19%)

Query: 14  RA--SLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPIL 71
           RA  +L + R +  E MG     V +            R G  +    + ++   G   L
Sbjct: 286 RALKALRRERSERREVMGTAKMQVEEAS----------RSGKIVFEMENVNYQIDG-KQL 334

Query: 72  FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDG 131
            K+ +  +    +IA++GPNG GK+T+LKL+ G+LQ  SG +    K+ +A F QH  + 
Sbjct: 335 VKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAE- 393

Query: 132 LDLSSNPLLYMMRCFPGVPEQKLRAHLG-----------SFGVTGNL---------ALQP 171
           LD                PE+ +  +L               V G L         A+ P
Sbjct: 394 LD----------------PEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTP 437

Query: 172 MYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDE 231
           +  LSGG+++R+  A++  K  ++++LDEP+N LD++ +E L + L  +QG +L+VSHD 
Sbjct: 438 VKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDR 497

Query: 232 HLISGSVEELWVVS-EGKATPFHGTFHD 258
             +  +V E W+    GK   + G +HD
Sbjct: 498 QFVDNTVTECWIFEGNGKIGRYVGGYHD 525

Length = 635

>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins

 Score =  115 bits (290), Expect = 7e-32
 Identities = 64/194 (32%), Positives = 105/194 (54%), Gaps = 25/194 (12%)

Query: 59  SDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK 118
            + S GY G  +L  +L+  I+    + ++GPNG GKST+LK +AG L+PSSG +     
Sbjct: 3   ENLSVGYGGRTVL-DDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEI----- 56

Query: 119 VRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGG 178
                     +DG DL+S     + R    VP Q L       G+  +LA +P   LSGG
Sbjct: 57  ---------LLDGKDLASLSPKELARKIAYVP-QALEL----LGLA-HLADRPFNELSGG 101

Query: 179 QKSRVAFAKITFKKPHIILLDEPSNHLDL---DAVEALIQGLVLFQG-GILMVSHDEHLI 234
           ++ RV  A+   ++P I+LLDEP++HLD+     +  L++ L   +G  ++MV HD +L 
Sbjct: 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161

Query: 235 SGSVEELWVVSEGK 248
           +   + + ++ +G+
Sbjct: 162 ARYADRVILLKDGR 175

ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score =  113 bits (285), Expect = 2e-31
 Identities = 62/195 (31%), Positives = 98/195 (50%), Gaps = 41/195 (21%)

Query: 57  SFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS 116
              + SF Y G   L  N++  +     +A+VGPNG GKST+L+ IAG L+P+SG +   
Sbjct: 1   EIENLSFRYGGRTAL-DNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEI--- 56

Query: 117 AKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLS 176
                       +DG D++  PL            ++LR  +G          Q    LS
Sbjct: 57  -----------LIDGKDIAKLPL------------EELRRRIG-------YVPQ----LS 82

Query: 177 GGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV-LFQGG--ILMVSHDEHL 233
           GGQ+ RVA A+     P ++LLDEP++ LD  + E L++ L  L + G  +++V+HD  L
Sbjct: 83  GGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPEL 142

Query: 234 ISGSVEELWVVSEGK 248
              + + + V+ +GK
Sbjct: 143 AELAADRVIVLKDGK 157

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

 Score =  114 bits (288), Expect = 1e-30
 Identities = 67/209 (32%), Positives = 99/209 (47%), Gaps = 43/209 (20%)

Query: 54  PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
            ++   + SFGY G PIL  +L+F I       ++GPNG GKST+LK +AG L+P SG V
Sbjct: 1   MMLEVENLSFGYGGKPIL-DDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV 59

Query: 114 F--------RSAKV---RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFG 162
                     S K    ++A   Q       L+   L+ + R            HLG FG
Sbjct: 60  LLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGR----------YPHLGLFG 109

Query: 163 VTG-----------------NLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHL 205
                               +LA +P+  LSGG++ RV  A+   ++  I+LLDEP++HL
Sbjct: 110 RPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHL 169

Query: 206 DL---DAVEALIQGLVLFQG-GILMVSHD 230
           D+     V  L++ L   +G  ++MV HD
Sbjct: 170 DIAHQIEVLELLRDLNREKGLTVVMVLHD 198

Length = 258

>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters

 Score =  112 bits (283), Expect = 2e-30
 Identities = 61/203 (30%), Positives = 97/203 (47%), Gaps = 21/203 (10%)

Query: 57  SFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS 116
              D +  Y G P+L ++++F +     +A+VGPNG GKST+LK I G L+P+SG++   
Sbjct: 1   EVEDLTVSYGGHPVL-EDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVF 59

Query: 117 AK------VRIAVFSQHH-------VDGLDLSSNPLLYMMRCFPGVPE---QKLRAHLGS 160
            K       RI    Q         +   D+    L      F  + +    K+   L  
Sbjct: 60  GKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALER 119

Query: 161 FGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL-VL 219
            G++  LA + +  LSGGQ+ RV  A+   + P ++LLDEP   +D    E + + L  L
Sbjct: 120 VGLSE-LADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLREL 178

Query: 220 FQGG--ILMVSHDEHLISGSVEE 240
            + G  IL+V+HD  L+    + 
Sbjct: 179 RREGMTILVVTHDLGLVLEYFDR 201

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213

>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system

 Score =  111 bits (281), Expect = 4e-30
 Identities = 68/226 (30%), Positives = 100/226 (44%), Gaps = 49/226 (21%)

Query: 57  SFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115
              + SF YP G      +++  I     + +VGPNG GKST+L+L+ G L P+SG V  
Sbjct: 1   ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL- 59

Query: 116 SAKVRIAVFSQHHVDGLDLSSNPL-----------------LYMMRCFP---------GV 149
                        VDG DL+   L                  +               G+
Sbjct: 60  -------------VDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGL 106

Query: 150 PE----QKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHL 205
           PE    +++   L   G+ G L  +  +TLSGGQK RVA A +    P I+LLDEP+  L
Sbjct: 107 PEEEIEERVEEALELVGLEG-LRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGL 165

Query: 206 DLDAVEALIQGLV-LFQGG--ILMVSHDEHLISGSVEELWVVSEGK 248
           D      L++ L  L   G  I++V+HD  L+    + + V+ +GK
Sbjct: 166 DPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211

Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211

>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score =  112 bits (283), Expect = 5e-30
 Identities = 60/204 (29%), Positives = 97/204 (47%), Gaps = 23/204 (11%)

Query: 53  PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGT 112
            P+I   + +  Y   P+L ++++  ++     A++GPNG GKST+LK I G L+PSSG 
Sbjct: 2   MPMIEVENLTVSYGNRPVL-EDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGE 60

Query: 113 VFRSAKV--------RIAVFSQH-HVD-GLDLSSNPLLYMMR--------CFPGVPEQKL 154
           +    K         RI    Q   VD    ++   ++ + R              ++K+
Sbjct: 61  IKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKV 120

Query: 155 RAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALI 214
              L   G+   L  + +  LSGGQK RV  A+   + P ++LLDEP   +D+   + + 
Sbjct: 121 DEALERVGMED-LRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIY 179

Query: 215 QGL-VLFQGG--ILMVSHDEHLIS 235
             L  L Q G  +LMV+HD  L+ 
Sbjct: 180 DLLKELRQEGKTVLMVTHDLGLVM 203

Length = 254

>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  111 bits (280), Expect = 8e-30
 Identities = 73/231 (31%), Positives = 108/231 (46%), Gaps = 52/231 (22%)

Query: 54  PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
            +I   + SF YPG     K+++  I+   R+ ++GPNG GKST+LKL+ G L+P+SG V
Sbjct: 2   RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61

Query: 114 FRSAKVRIAVFSQHHVDGLDLSSNPLLYMMR-----------------------CFP--- 147
                          VDGLD SS   L  +R                        F    
Sbjct: 62  L--------------VDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLEN 107

Query: 148 -GVPEQKLRAH----LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS 202
            G+P +++       L   G+   L  +P + LSGGQK RVA A +    P I+LLDEP+
Sbjct: 108 LGLPREEIEERVAEALELVGLEE-LLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPT 166

Query: 203 NHLDLDAVE---ALIQGLVLFQGG--ILMVSHDEHLISGSVEELWVVSEGK 248
             LD         L++ L   +GG  I++V+HD  L+    + + V+ +GK
Sbjct: 167 AGLDPKGRRELLELLKKLKE-EGGKTIIIVTHDLELVLEYADRVVVLDDGK 216

Length = 235

>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters

 Score =  106 bits (267), Expect = 2e-28
 Identities = 56/196 (28%), Positives = 98/196 (50%), Gaps = 28/196 (14%)

Query: 56  ISFSDASFGYPGGP-ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
           I F + SF YPG P  + K+++  I    ++A+VGP+G GKST+LKL+     P+SG + 
Sbjct: 1   IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60

Query: 115 RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYT 174
                         +DG+DL    L  + +    VP+      L S  +  N+       
Sbjct: 61  --------------IDGVDLRDLDLESLRKNIAYVPQD---PFLFSGTIRENI------- 96

Query: 175 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGG--ILMVSHDEH 232
           LSGGQ+ R+A A+   + P I++LDE ++ LD +    +++ L     G  +++++H   
Sbjct: 97  LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLS 156

Query: 233 LISGSVEELWVVSEGK 248
            I    + + V+ +G+
Sbjct: 157 TIR-DADRIIVLDDGR 171

The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score =  111 bits (279), Expect = 9e-28
 Identities = 76/269 (28%), Positives = 129/269 (47%), Gaps = 33/269 (12%)

Query: 9   RYNAK-RASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPG 67
           R + K R +  ++R+   E +   +    +   +   P P  R G  +I   + S G+ G
Sbjct: 276 RSSPKARQAKSKARLARYEELLSQEFQKRNETAEIYIP-PGPRLGDKVIEAENLSKGF-G 333

Query: 68  GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQH 127
             +L  +L+F +     + ++GPNG GKST+ ++I G+ QP SGT+     V++A   Q 
Sbjct: 334 DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQS 393

Query: 128 HVDGLDLS-------SNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQK 180
             D LD +       S  L  +     G  E   RA++G F   G+   + +  LSGG++
Sbjct: 394 R-DALDPNKTVWEEISGGLDIIQL---GKREVPSRAYVGRFNFKGSDQQKKVGQLSGGER 449

Query: 181 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDE--------H 232
           +RV  AK      +++LLDEP+N LD++ + AL + L+ F G  +++SHD         H
Sbjct: 450 NRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFAGCAVVISHDRWFLDRIATH 509

Query: 233 LIS--GSVEELWVVSEGKATPFHGTFHDY 259
           +++  G     W         F G + +Y
Sbjct: 510 ILAFEGDSHVEW---------FEGNYSEY 529

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C

 Score =  100 bits (251), Expect = 4e-26
 Identities = 57/198 (28%), Positives = 100/198 (50%), Gaps = 29/198 (14%)

Query: 56  ISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
           +   + SF YPG  P + +N++F I+    +A++GP+G GKST+ +LI G L+P+SG V 
Sbjct: 1   LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV- 59

Query: 115 RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYT 174
                         +DG D+S      +      +P Q      GS  +  N+       
Sbjct: 60  -------------RLDGADISQWDPNELGDHVGYLP-QDDELFSGS--IAENI------- 96

Query: 175 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLD---AVEALIQGLVLFQGGILMVSHDE 231
           LSGGQ+ R+  A+  +  P I++LDEP++HLD++   A+   I  L       ++++H  
Sbjct: 97  LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRP 156

Query: 232 HLISGSVEELWVVSEGKA 249
             ++ S + + V+ +G+ 
Sbjct: 157 ETLA-SADRILVLEDGRV 173

This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173

>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit

 Score =  103 bits (260), Expect = 3e-25
 Identities = 68/244 (27%), Positives = 109/244 (44%), Gaps = 35/244 (14%)

Query: 15  ASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGP---PIISFSDASFGYPGGPIL 71
             L + R  A ER+    EV++      E   P         P +   D S GYPG P +
Sbjct: 295 QQLTRVRA-AAERI---VEVLDAAGPVAEGSAPAAGAVGLGKPTLELRDLSAGYPGAPPV 350

Query: 72  FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV---------FRSAKVR-- 120
              ++  +    R+A++GP+G GKST+L  +AG L P  G V             +VR  
Sbjct: 351 LDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRR 410

Query: 121 IAVFSQH-HVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQP--MYT--- 174
           ++V +Q  H+    +  N  L      P   +++L A L   G+   L   P  + T   
Sbjct: 411 VSVCAQDAHLFDTTVRENLRLAR----PDATDEELWAALERVGLADWLRALPDGLDTVLG 466

Query: 175 -----LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL--VLFQGGILMV 227
                LSGG++ R+A A+       I+LLDEP+ HLD +  + L++ L   L    ++++
Sbjct: 467 EGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLI 526

Query: 228 SHDE 231
           +H  
Sbjct: 527 THHL 530

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530

>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit

 Score = 97.5 bits (243), Expect = 6e-25
 Identities = 61/197 (30%), Positives = 93/197 (47%), Gaps = 34/197 (17%)

Query: 65  YPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV----------- 113
           YPGGP + K LNF  +    +A++G NG GKST+L  + G L+P SG V           
Sbjct: 1   YPGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSR 60

Query: 114 --FRSAKVRIAVFSQHHVDGL-------DLSSNPLLYMMRCFPGVPEQKLRAH----LGS 160
                 + R+ +  Q   D L       D++  PL        G+ E ++       L +
Sbjct: 61  KGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNL------GLSEAEVERRVREALTA 114

Query: 161 FGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVE---ALIQGL 217
            G +G L  +P + LSGG+K RVA A     +P ++LLDEP+  LD    E   A+++ L
Sbjct: 115 VGASG-LRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRL 173

Query: 218 VLFQGGILMVSHDEHLI 234
                 +++ +HD  L 
Sbjct: 174 RAEGMTVVISTHDVDLA 190

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190

>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A

 Score = 95.9 bits (240), Expect = 2e-24
 Identities = 47/202 (23%), Positives = 86/202 (42%), Gaps = 39/202 (19%)

Query: 56  ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115
           I   + S  Y     L  +++  ++      ++GPNG GK+T++K+I G L+P SG +  
Sbjct: 1   IEVRNLSKRYGKKTAL-DDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIK- 58

Query: 116 SAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYT- 174
                        V G D+   P              +++  +G   +    +L    T 
Sbjct: 59  -------------VLGKDIKKEPE-------------EVKRRIGY--LPEEPSLYENLTV 90

Query: 175 -----LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEA---LIQGLVLFQGGILM 226
                LSGG K R+A A+     P +++LDEP++ LD ++      L++ L      IL+
Sbjct: 91  RENLKLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILL 150

Query: 227 VSHDEHLISGSVEELWVVSEGK 248
            SH         + + +++ G+
Sbjct: 151 SSHILEEAERLCDRVAILNNGR 172

This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173

>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed

 Score =  101 bits (254), Expect = 2e-24
 Identities = 71/235 (30%), Positives = 118/235 (50%), Gaps = 24/235 (10%)

Query: 9   RYNAK-RASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPG 67
           R + K R +  ++R+   E +   +    +   +   P P  R G  +I   + S  + G
Sbjct: 278 RQSPKARQAKSKARLARYEELLSEEYQKRNETNEIFIP-PGPRLGDKVIEAENLSKSF-G 335

Query: 68  GPILFKNLNF-----GIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIA 122
             +L  +L+F     GI     + ++GPNG GKST+ K+I G+ QP SGT+     V++A
Sbjct: 336 DRLLIDDLSFSLPPGGI-----VGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLA 390

Query: 123 VFSQHHVDGLDLS-------SNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTL 175
              Q   D LD +       S  L  +     G  E   RA++G F   G    + +  L
Sbjct: 391 YVDQSR-DALDPNKTVWEEISGGLDIIKV---GNREIPSRAYVGRFNFKGGDQQKKVGVL 446

Query: 176 SGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHD 230
           SGG+++R+  AK   +  +++LLDEP+N LD++ + AL + L+ F G  +++SHD
Sbjct: 447 SGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFPGCAVVISHD 501

Length = 556

>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 96.8 bits (242), Expect = 3e-24
 Identities = 62/195 (31%), Positives = 91/195 (46%), Gaps = 28/195 (14%)

Query: 64  GYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF--------- 114
           G      L K++N  I+    +A+VGP+G GKST+L L+ G  +P+SG V          
Sbjct: 14  GGEKVEAL-KDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKL 72

Query: 115 ---RSAKVR---IA-VFSQHH-VDGLDLSSNPLLYMMRCFPGVP----EQKLRAHLGSFG 162
                AK+R   I  VF   + +  L +  N  L ++    G      ++     L   G
Sbjct: 73  SEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLL--IAGKSAGRRKRAAEELLEVLG 130

Query: 163 VTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL---DAVEALIQGLVL 219
           +   L  +    LSGGQ+ RVA A+     P IIL DEP+ +LD      V  L++ L  
Sbjct: 131 LEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNK 190

Query: 220 FQG-GILMVSHDEHL 233
            +G  I+MV+HD  L
Sbjct: 191 ERGKTIIMVTHDPEL 205

Length = 226

>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 97.3 bits (243), Expect = 3e-24
 Identities = 58/179 (32%), Positives = 85/179 (47%), Gaps = 27/179 (15%)

Query: 54  PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
            +I   + S  YPGG    K++N  I+    +A++GP+G GKST+L+ + G + P+SG +
Sbjct: 2   MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI 61

Query: 114 F--------------RSAKVRIAVFSQHH--VDGLDLSSNPLLYMM------RCFPGVP- 150
                          R  +  I +  Q    V  L +  N LL  +      R   G+  
Sbjct: 62  LFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFS 121

Query: 151 -EQKLRAH--LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 206
            E K +A   L   G+  + A Q   TLSGGQ+ RVA A+   ++P IIL DEP   LD
Sbjct: 122 KEDKAQALDALERVGI-LDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLD 179

Length = 258

>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 99.3 bits (248), Expect = 1e-23
 Identities = 60/217 (27%), Positives = 98/217 (45%), Gaps = 30/217 (13%)

Query: 56  ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF- 114
           IS  + SF YP G     +LN  I      A+VG +G GKST+L L+ G L P+ G +  
Sbjct: 321 ISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRV 380

Query: 115 ---------RSAKVR-IAVFSQH-HVDGLDLSSNPLLYMMRCFPGVPEQKL-----RAHL 158
                      A  + I+  SQ+ ++    +  N LL      P   ++++     +A L
Sbjct: 381 NGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLAR----PDASDEEIIAALDQAGL 436

Query: 159 GSFGVTGNLALQPMY-----TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL 213
             F V     L  +       LSGGQ  R+A A+       ++LLDEP+ HLD +  + +
Sbjct: 437 LEF-VPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQII 495

Query: 214 IQGLV-LFQGGI-LMVSHDEHLISGSVEELWVVSEGK 248
           +Q L  L +    L+++H     +   + + V+  G+
Sbjct: 496 LQALQELAKQKTVLVITHRLEDAAD-ADRIVVLDNGR 531

Length = 559

>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein

 Score = 93.7 bits (234), Expect = 3e-23
 Identities = 67/210 (31%), Positives = 97/210 (46%), Gaps = 35/210 (16%)

Query: 56  ISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 111
           I   + S  Y GG      L K ++  I+    +A+VGP+G GKST+L ++ G  +P+SG
Sbjct: 1   IELKNLSKTYGGGGEKVQAL-KGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSG 59

Query: 112 TV-----------------FRSAKVRIAVFSQHH-VDGLDLSSNPLLYMMRCFPGVP--E 151
            V                 FR   +   VF   + +  L    N  L ++    GVP  E
Sbjct: 60  EVRVDGTDISKLSEKELAAFRRRHIGF-VFQSFNLLPDLTALENVELPLL--LAGVPKKE 116

Query: 152 QKLRAH--LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLD- 208
           ++ RA   L   G+   L   P   LSGGQ+ RVA A+     P IIL DEP+ +LD + 
Sbjct: 117 RRERAEELLERVGLGDRLNHYPS-ELSGGQQQRVAIARALANDPKIILADEPTGNLDSET 175

Query: 209 --AVEALIQGLVLFQG-GILMVSHDEHLIS 235
              V  L++ L    G  I++V+HD  L  
Sbjct: 176 GKEVMELLRELNKEAGTTIVVVTHDPELAE 205

This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218

>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents

 Score = 94.1 bits (235), Expect = 3e-23
 Identities = 62/229 (27%), Positives = 98/229 (42%), Gaps = 26/229 (11%)

Query: 56  ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF- 114
           I     +  + G  +L K ++  +     +A++GP+G GKST+L+LI G L+P SG V  
Sbjct: 1   IELRGLTKSFGGRTVL-KGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLI 59

Query: 115 -------------RSAKVRIAVFSQHHV--DGLDLSSN---PLLYMMRCFPGVPEQKLRA 156
                           + R+ +  Q     D L +  N   PL    R       + +  
Sbjct: 60  DGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLE 119

Query: 157 HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD---LDAVEAL 213
            L + G+ G   L P   LSGG K RVA A+     P ++L DEP+  LD      ++ L
Sbjct: 120 KLEAVGLRGAEDLYP-AELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDL 178

Query: 214 IQGL-VLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261
           I+ L        +MV+HD        + + V+ +GK     GT  + + 
Sbjct: 179 IRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGK-IVAEGTPEELRA 226

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

 Score = 93.1 bits (232), Expect = 1e-22
 Identities = 66/251 (26%), Positives = 102/251 (40%), Gaps = 41/251 (16%)

Query: 30  HVDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVG 89
              E+    + K   P        P+I   + S    G  IL  +L++ ++     A+VG
Sbjct: 9   RGVELPEPKEPKKRHPIEI---NEPLIELKNVSVRRNGKKIL-GDLSWQVNPGEHWAIVG 64

Query: 90  PNGIGKSTILKLIAGELQPSSGTV---------------------FRSAKVRIAVFSQHH 128
           PNG GK+T+L L+ GE  PSSG V                       S+++      +  
Sbjct: 65  PNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRET 124

Query: 129 VDGLDLS----SNPLLYMMRCFPGVPEQKLRAH--LGSFGVTGNLALQPMYTLSGGQKSR 182
           V  + LS    S  +           E    A   L   G   +LA +P  +LS G++ R
Sbjct: 125 VRDVVLSGFFASIGIYQE----DLTAEDLAAAQWLLELLGAK-HLADRPFGSLSQGEQRR 179

Query: 183 VAFAKITFKKPHIILLDEPSNHLDLDAVEAL---IQGLVLFQGG--ILMVSHDEHLISGS 237
           V  A+   K P +++LDEP+  LDL A E L   ++ L    G   +L V+H    I   
Sbjct: 180 VLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPC 239

Query: 238 VEELWVVSEGK 248
                ++ EG+
Sbjct: 240 FTHRLLLKEGE 250

Length = 257

>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit

 Score = 96.2 bits (240), Expect = 1e-22
 Identities = 61/221 (27%), Positives = 96/221 (43%), Gaps = 38/221 (17%)

Query: 45  PTPDDRP----GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILK 100
           P     P      P + FS  S  YPG     + ++F +    R+A+VGP+G GKST+L 
Sbjct: 307 PLAGKAPVTAAPAPSLEFSGVSVAYPGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLN 366

Query: 101 LIAGELQPSSGTVFRSAKVRIAVFSQHHVDG--LDLSSNPLLY--------MMRCFPGVP 150
           L+ G + P+ G++     V +A             +  +P L+         +   P   
Sbjct: 367 LLLGFVDPTEGSI-AVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLAR-PDAS 424

Query: 151 EQKLRAHLGSFGVTGNLALQPMYT----------LSGGQKSRVAFAKITFKKPHIILLDE 200
           + ++R  L   G+   +A  P             LSGGQ  R+A A+   +   ++LLDE
Sbjct: 425 DAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDE 484

Query: 201 PSNHLD-------LDAVEALIQGLVLFQGGILMVSHDEHLI 234
           P+ HLD       L+A+ AL QG  +     L+V+H   L 
Sbjct: 485 PTAHLDAETEAEVLEALRALAQGRTV-----LLVTHRLALA 520

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529

>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed

 Score = 90.6 bits (225), Expect = 1e-21
 Identities = 59/190 (31%), Positives = 94/190 (49%), Gaps = 26/190 (13%)

Query: 59  SDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK 118
           SD S     G IL               ++GPNG GKST+++++ G + P  G + R+ K
Sbjct: 21  SDVSLELKPGKIL--------------TLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK 66

Query: 119 VRIAVFSQH-HVDGLDLSSNPLLY--MMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTL 175
           +RI    Q  ++D    ++ PL     +R  PG  ++ +   L      G+L   PM  L
Sbjct: 67  LRIGYVPQKLYLD----TTLPLTVNRFLRLRPGTKKEDILPALKRVQ-AGHLIDAPMQKL 121

Query: 176 SGGQKSRVAFAKITFKKPHIILLDEPSNHLDLD---AVEALIQGL-VLFQGGILMVSHDE 231
           SGG+  RV  A+    +P +++LDEP+  +D++   A+  LI  L       +LMVSHD 
Sbjct: 122 SGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDL 181

Query: 232 HLISGSVEEL 241
           HL+    +E+
Sbjct: 182 HLVMAKTDEV 191

Length = 251

>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 89.9 bits (224), Expect = 1e-21
 Identities = 53/203 (26%), Positives = 87/203 (42%), Gaps = 38/203 (18%)

Query: 53  PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGT 112
             ++     S  + G  +L +++N  ++    +A++GP+G GKST+L+LIAG  +P+SG 
Sbjct: 1   MALLEIEGVSKSFGGVEVL-EDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGE 59

Query: 113 VF------RSAKVRIAVFSQHHV--------D----GLDLSSNPLLYMMRCFPGVPEQKL 154
           V             I    Q           D    GL+L                 ++ 
Sbjct: 60  VLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKS--------KAEARERA 111

Query: 155 RAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD-------L 207
           +  L   G+ G     P + LSGG + RVA A+    +P ++LLDEP   LD        
Sbjct: 112 KELLELVGLAGFEDKYP-HQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQ 170

Query: 208 DAVEALIQGLVLFQGGILMVSHD 230
           D +  L +     +  +L+V+HD
Sbjct: 171 DELLRLWEET---RKTVLLVTHD 190

Length = 248

>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

 Score = 92.7 bits (231), Expect = 3e-21
 Identities = 66/248 (26%), Positives = 106/248 (42%), Gaps = 65/248 (26%)

Query: 24  ALERMGHVDEVVNDPDYKFEFPTPDDRPGPPI----ISFSDASFGY-PGGPILFKNLNFG 78
           ALER   + ++++ P    E          P     I F + SF Y P  P + ++L+  
Sbjct: 442 ALER---LGDILDTPP---EQEGDKTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLE 495

Query: 79  IDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNP 138
           I    ++A+VG +G GKST+LKL+ G  +P  G +               +DG+DL+   
Sbjct: 496 IPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRIL--------------LDGVDLNDID 541

Query: 139 LLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL-------------------------QPM- 172
           L  + R    V +      L S  +  N+AL                          PM 
Sbjct: 542 LASLRRQVGYVLQD---PFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMG 598

Query: 173 Y---------TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGG 223
           Y          LSGGQ+ R+A A+    KP I+LLDE ++ LD +    ++Q L+    G
Sbjct: 599 YDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQG 658

Query: 224 --ILMVSH 229
             +++++H
Sbjct: 659 RTVIIIAH 666

Length = 709

>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein

 Score = 89.5 bits (222), Expect = 3e-21
 Identities = 56/189 (29%), Positives = 96/189 (50%), Gaps = 31/189 (16%)

Query: 86  AMVGPNGIGKSTILKLIAGELQPSSGTVF-----------RSAKVRIAVFSQHHVDGLDL 134
            ++GPNG GKST+L+L+AG L+P +GTV            R+   R+A+  Q     + L
Sbjct: 31  GLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPL 90

Query: 135 SSNPLLYMMRCFPGVPEQKL------------RAHLGSFGVTGNLALQPMYTLSGGQKSR 182
           +   ++ + R    +P + L               L    ++ +LA + M TLSGG++ R
Sbjct: 91  TVRDVVALGR----IPHRSLWAGDSPHDAAVVDRALARTELS-HLADRDMSTLSGGERQR 145

Query: 183 VAFAKITFKKPHIILLDEPSNHLDLDA---VEALIQGLVLFQGGILMVSHDEHLISGSVE 239
           V  A+   ++P ++LLDEP+NHLD+ A     AL++ L      ++   HD +L +   +
Sbjct: 146 VHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCD 205

Query: 240 ELWVVSEGK 248
            + V+  G+
Sbjct: 206 HVVVLDGGR 214

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256

>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C

 Score = 87.8 bits (218), Expect = 3e-21
 Identities = 55/199 (27%), Positives = 96/199 (48%), Gaps = 28/199 (14%)

Query: 56  ISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
           +S ++ SF YP     + KNL+  +    +IA++G +G GKST+L+L+ G+L+P  G + 
Sbjct: 1   LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60

Query: 115 RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYT 174
                         +DG+ +S   L   +     V  Q  R +L    +  NL  +    
Sbjct: 61  --------------LDGVPVSD--LEKALSSLISVLNQ--RPYLFDTTLRNNLGRR---- 98

Query: 175 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL--VLFQGGILMVSHDEH 232
            SGG++ R+A A+I  +   I+LLDEP+  LD      L+  +  VL    ++ ++H  H
Sbjct: 99  FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITH--H 156

Query: 233 LISGS-VEELWVVSEGKAT 250
           L     ++++  +  GK  
Sbjct: 157 LTGIEHMDKILFLENGKII 175

The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178

>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional

 Score = 87.2 bits (217), Expect = 6e-21
 Identities = 61/181 (33%), Positives = 85/181 (46%), Gaps = 26/181 (14%)

Query: 67  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQ 126
           GG +LF  L+F +     + + GPNG GK+T+L+LIAG L P++GT+             
Sbjct: 13  GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTI--KLDGGDIDDPD 70

Query: 127 H--------HVDGLDLSSNPLLYMM------RCFPGVPEQKLRAHLGSFGVTGNLALQPM 172
                    H + +     P L +         F G  E  + A L + G+   LA  P 
Sbjct: 71  VAEACHYLGHRNAM----KPALTVAENLEFWAAFLGGEELDIAAALEAVGL-APLAHLPF 125

Query: 173 YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV---LFQGGI-LMVS 228
             LS GQK RVA A++      I +LDEP+  LD  AV AL   L+   L QGGI +  +
Sbjct: 126 GYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAV-ALFAELIRAHLAQGGIVIAAT 184

Query: 229 H 229
           H
Sbjct: 185 H 185

Length = 207

>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system

 Score = 86.9 bits (216), Expect = 8e-21
 Identities = 51/189 (26%), Positives = 87/189 (46%), Gaps = 15/189 (7%)

Query: 60  DASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF----- 114
           + SF Y  G  +  +L+  +     IA+ G NG GK+T+ K++AG ++ SSG++      
Sbjct: 4   NISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKP 63

Query: 115 RSAKVRI--AVFSQHHVD---GLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL 169
             AK R     +    VD     D     LL  ++      EQ     L    +      
Sbjct: 64  IKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQA-ETVLKDLDLYALKER 122

Query: 170 QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD---LDAVEALIQGLVLFQGGILM 226
            P+ +LSGGQK R+A A        +++ DEP++ LD   ++ V  LI+ L      +++
Sbjct: 123 HPL-SLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIV 181

Query: 227 VSHDEHLIS 235
           ++HD   ++
Sbjct: 182 ITHDYEFLA 190

Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205

>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family

 Score = 90.3 bits (225), Expect = 2e-20
 Identities = 66/242 (27%), Positives = 106/242 (43%), Gaps = 48/242 (19%)

Query: 46  TPDDRPG-------PPI---ISFSDASFGYPG--GPILFKNLNFGIDLDSRIAMVGPNGI 93
            P +RP        P +   I F + SF YPG   P L  N++  I    ++A++G  G 
Sbjct: 444 LPVERPEGTRFLHRPRLQGEIEFRNVSFAYPGQETPAL-DNVSLTIRPGEKVAIIGRIGS 502

Query: 94  GKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSN--------PLLY---- 141
           GKST+LKL+ G  QP+ G+      V +       +D  DL  N         L Y    
Sbjct: 503 GKSTLLKLLLGLYQPTEGS------VLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLR 556

Query: 142 ---MMRCFPGVPEQKLRAHLGSFGVTGNLALQPM----------YTLSGGQKSRVAFAKI 188
               +   P   ++++       GVT  +   P            +LSGGQ+  VA A+ 
Sbjct: 557 DNIALGA-PYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARA 615

Query: 189 TFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGG--ILMVSHDEHLISGSVEELWVVSE 246
             + P I+LLDEP++ +D  + E     L  +  G  +++V+H   L+   V+ + V+  
Sbjct: 616 LLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLD-LVDRIIVMDN 674

Query: 247 GK 248
           G+
Sbjct: 675 GR 676

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694

>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

 Score = 85.8 bits (213), Expect = 2e-20
 Identities = 51/180 (28%), Positives = 87/180 (48%), Gaps = 17/180 (9%)

Query: 67  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV-FRSAKVRIA--V 123
           G   LF +L+F ++    + + GPNG GK+T+L+++AG L+P +G V ++   ++     
Sbjct: 13  GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRES 72

Query: 124 FSQH-----HVDGL--DLSS--NPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYT 174
           + Q      H  G+  +L++  N L +  R         +   L   G+ G   L P+  
Sbjct: 73  YHQALLYLGHQPGIKTELTALEN-LHFWQRFHGSGNAATIWEALAQVGLAGLEDL-PVGQ 130

Query: 175 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAV---EALIQGLVLFQGGILMVSHDE 231
           LS GQ+ RVA A++      + +LDEP   LD + V    AL+       G +L+ +H  
Sbjct: 131 LSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQP 190

Length = 209

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score = 89.0 bits (221), Expect = 4e-20
 Identities = 70/289 (24%), Positives = 116/289 (40%), Gaps = 57/289 (19%)

Query: 16  SLVQSRIKALERM-GHVDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKN 74
           SL+Q    A ER+   +DE     D                I F + SF YPG   + K+
Sbjct: 293 SLLQRASAAAERLFELLDEEPEVEDPPDPLKDTIGS-----IEFENVSFSYPGKKPVLKD 347

Query: 75  LNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF-----------RSAKVRIAV 123
           ++F I+   ++A+VGP+G GKST++KL+     P+SG +             S + RI +
Sbjct: 348 ISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGI 407

Query: 124 FSQHHV-------DGLDLSSNP-----------LLYMMRCFPGVPEQKLRAHLGSFGVTG 165
            SQ  +       + + L               L         +P       +G  GV  
Sbjct: 408 VSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLP-DGYDTIVGERGV-- 464

Query: 166 NLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGG-- 223
                    LSGGQ+ R+A A+   + P I++LDE ++ LD +    +   L     G  
Sbjct: 465 --------NLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRT 516

Query: 224 ILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHD-------YKKMLQS 265
            L+++H    I    + + V+  G+     GT  +       Y ++ Q+
Sbjct: 517 TLIIAHRLSTIKN-ADRIIVLDNGRIV-ERGTHEELLAKGGLYARLYQA 563

Length = 567

>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters

 Score = 84.8 bits (211), Expect = 7e-20
 Identities = 62/214 (28%), Positives = 88/214 (41%), Gaps = 62/214 (28%)

Query: 56  ISFSDASFGYPGGPILFKNLNFGIDLDSR----IAMVGPNGIGKSTILKLIAGELQPSSG 111
           +   + S  Y GG      L   I L       +A+VGP+G GKST+L++IAG  +P+SG
Sbjct: 1   LEVRNVSKTYGGGGGAVTALE-DISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSG 59

Query: 112 TV-FRSAKV------RIAVFSQHHVDGLDLSSNPLLYMMRCFP---------------GV 149
            V      V      R  VF Q  +                 P               GV
Sbjct: 60  EVLVDGEPVTGPGPDRGYVFQQDAL----------------LPWLTVLDNVALGLELQGV 103

Query: 150 PEQKLRAH----LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHL 205
           P+ + R      L   G++G     P + LSGG + RVA A+     P ++LLDEP + L
Sbjct: 104 PKAEARERAEELLELVGLSGFENAYP-HQLSGGMRQRVALARALAVDPDVLLLDEPFSAL 162

Query: 206 DLDAVEAL----IQGLVL-----FQGGILMVSHD 230
           D     AL    +Q  +L         +L+V+HD
Sbjct: 163 D-----ALTREQLQEELLDIWRETGKTVLLVTHD 191

NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems

 Score = 83.8 bits (208), Expect = 7e-20
 Identities = 55/203 (27%), Positives = 95/203 (46%), Gaps = 35/203 (17%)

Query: 56  ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115
           +   + S  Y    +L  +++  I+    +A++GP+G GKST+L+ IAG  +P SG++  
Sbjct: 1   LELKNVSKRYGQKTVL-NDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSIL- 58

Query: 116 SAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFG------VTGNLAL 169
                        +DG DL+       +        +++      F       V  N+A 
Sbjct: 59  -------------IDGEDLTD------LEDELPPLRRRIGMVFQDFALFPHLTVLENIA- 98

Query: 170 QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL---DAVEALIQGLVLFQG-GIL 225
                LSGGQ+ RVA A+     P ++LLDEP++ LD      V AL++ L    G  ++
Sbjct: 99  ---LGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVV 155

Query: 226 MVSHDEHLISGSVEELWVVSEGK 248
           +V+HD    +   + + V+ +GK
Sbjct: 156 LVTHDLDEAARLADRVVVLRDGK 178

This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178

>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

 Score = 85.4 bits (212), Expect = 7e-20
 Identities = 58/211 (27%), Positives = 90/211 (42%), Gaps = 29/211 (13%)

Query: 43  EFPTPDDRPGPPIISFSDASFGYPGGPILF--KNLNFGIDLDSRIAMVGPNGIGKSTILK 100
           +F    ++           + G       +  K+++F I    R+ ++G NG GKST+LK
Sbjct: 12  KFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLK 71

Query: 101 LIAGELQPSSGTVFRSAKVR----IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLR- 155
           LIAG  +P+SG V  + KV     +       + G +   N  L  +    G+  +++  
Sbjct: 72  LIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRE---NIYLRGL--ILGLTRKEIDE 126

Query: 156 --------AHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 207
                   A LG F        QP+ T S G  +R+AF+  T  +P I+LLDE     D 
Sbjct: 127 KVDEIIEFAELGDF------IDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDA 180

Query: 208 DAVE---ALIQGLVLFQGGILMVSHDEHLIS 235
              E     +  LV     I++VSHD   I 
Sbjct: 181 AFQEKCLERLNELVEKNKTIVLVSHDLGAIK 211

Length = 249

>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed

 Score = 87.7 bits (218), Expect = 1e-19
 Identities = 54/219 (24%), Positives = 93/219 (42%), Gaps = 42/219 (19%)

Query: 55  IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
           +IS   A   +   P+L  N    I+ + R+ +VG NG GKST++K++ GE+    G + 
Sbjct: 3   LISIHGAWLSFSDAPLL-DNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRII 61

Query: 115 RSAKVRIA-------------VFS--------------QHHVDGLDLSSNPLLYMMRCFP 147
               + +A             V+               ++H     + ++P    +    
Sbjct: 62  YEQDLIVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELA 121

Query: 148 GVPEQ-----------KLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII 196
            + EQ           ++   L   G+  +     + +LSGG   + A  +     P ++
Sbjct: 122 KLQEQLDHHNLWQLENRINEVLAQLGLDPD---AALSSLSGGWLRKAALGRALVSNPDVL 178

Query: 197 LLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLIS 235
           LLDEP+NHLD++ +E L   L  FQG I+ +SHD   I 
Sbjct: 179 LLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIR 217

Length = 635

>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter

 Score = 80.8 bits (200), Expect = 2e-19
 Identities = 42/122 (34%), Positives = 59/122 (48%), Gaps = 17/122 (13%)

Query: 96  STILKLIAGELQPSSGTV------------FRSAKVRIAVFSQHHVDGLDLS--SNPLLY 141
           ST+LKLI G LQP+SGT+             +  + RI V  Q      +L+   N    
Sbjct: 1   STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60

Query: 142 MMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP 201
           +        + +    L   G+   L  +P+ TLSGGQK RVA A+   KKP ++LLDEP
Sbjct: 61  LRD---KEADARAEEALERVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLLLLDEP 117

Query: 202 SN 203
           + 
Sbjct: 118 TA 119

ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119

>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C

 Score = 83.4 bits (207), Expect = 2e-19
 Identities = 58/210 (27%), Positives = 93/210 (44%), Gaps = 51/210 (24%)

Query: 56  ISFSDASFGYPGGPIL-FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
           I F + SF YP   I    N++  I    ++A++G  G GKST+LKL+AG  +P+SG+V 
Sbjct: 3   IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVL 62

Query: 115 RSAKVRIAVFSQHHVDGLD---------------LSSNPLLY--------MMRCFPGVPE 151
                         +DG D               +  +  L+         +       E
Sbjct: 63  --------------LDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDE 108

Query: 152 QKLRAHLGSFGVTGNLALQPM----------YTLSGGQKSRVAFAKITFKKPHIILLDEP 201
           + LRA   + GVT  +   P             LSGGQ+  VA A+     P I+LLDEP
Sbjct: 109 RILRAAELA-GVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEP 167

Query: 202 SNHLDLDAVEALIQGLVLFQGG--ILMVSH 229
           ++ +D+++ E L + L    G   +++++H
Sbjct: 168 TSAMDMNSEERLKERLRQLLGDKTLIIITH 197

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220

>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]

 Score = 84.7 bits (210), Expect = 3e-19
 Identities = 60/236 (25%), Positives = 105/236 (44%), Gaps = 32/236 (13%)

Query: 54  PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
            +I   + +  Y G       ++F ++      ++GPNG GK+T+LK++AG L+P+SG +
Sbjct: 3   EVIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62

Query: 114 ----------FRSAKVRIAVFSQ--HHVDGLDLSSNPLLYMMRCFPGVPEQKLRAH---- 157
                         + RI    Q       L +  N  L       G+ +++        
Sbjct: 63  LVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVREN--LEFFARLYGLSKEEAEERIEEL 120

Query: 158 LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL 217
           L  FG+    A + + TLSGG K R++ A      P +++LDEP++ LD ++   + + L
Sbjct: 121 LELFGLEDK-ANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELL 179

Query: 218 VLF--QGG--ILMVSHDEHLISGSVEEL----WVVSEGKATPFHGTFHDYKKMLQS 265
                +GG  IL+ +H    I    EEL     ++++GK     GT  + K+    
Sbjct: 180 RELAKEGGVTILLSTH----ILEEAEELCDRVIILNDGKII-AEGTPEELKEKFGG 230

Length = 293

>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 83.8 bits (208), Expect = 4e-19
 Identities = 57/226 (25%), Positives = 100/226 (44%), Gaps = 27/226 (11%)

Query: 54  PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
           P+I     +  + G  ++   ++  +     +A++G +G GKST+L+LI G L+P  G +
Sbjct: 7   PLIEVRGVTKSF-GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI 65

Query: 114 F--------------RSAKVRIAVFSQHHV--DGLDLSSNPLLYMMRCFPGVPEQKLRA- 156
                             + R+ V  Q       L +  N + + +R    +PE  +R  
Sbjct: 66  LIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFEN-VAFPLREHTKLPESLIREL 124

Query: 157 ---HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD---LDAV 210
               L   G+ G  A      LSGG + RVA A+     P ++ LDEP++ LD      +
Sbjct: 125 VLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVI 184

Query: 211 EALIQGLV-LFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGT 255
           + LI+ L       ++MV+HD   +    + + V+++GK     GT
Sbjct: 185 DELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGK-VIAEGT 229

Length = 263

>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like

 Score = 81.4 bits (202), Expect = 1e-18
 Identities = 58/195 (29%), Positives = 92/195 (47%), Gaps = 46/195 (23%)

Query: 67  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQ 126
           G      +L+  ++    +A++GP+G GK+T+L+LIAG  +P SG +             
Sbjct: 11  GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEIL------------ 58

Query: 127 HHVDGLDLSSNPL----LYMM----RCFP---------------GVPEQKLRAH----LG 159
             +DG D++  P     + M+      FP               GVP+ ++RA     L 
Sbjct: 59  --IDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLE 116

Query: 160 SFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL---IQG 216
             G+ G L   P + LSGGQ+ RVA A+   ++P ++LLDEP + LD    E L   ++ 
Sbjct: 117 LVGLEGLLNRYP-HELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKE 175

Query: 217 LVLFQG-GILMVSHD 230
           L    G   + V+HD
Sbjct: 176 LQRELGITTIYVTHD 190

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213

>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group

 Score = 80.7 bits (200), Expect = 2e-18
 Identities = 52/187 (27%), Positives = 85/187 (45%), Gaps = 25/187 (13%)

Query: 67  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF---------RSA 117
           G  ++  +LN  I+     A++G +G GKST+L +I    +  SG V+          S 
Sbjct: 9   GDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSK 68

Query: 118 KVR------IAVFSQHH--VDGLDLSSN---PLLYMMRCFPGVPEQKLRAHLGSFGVTGN 166
           K        +    Q+   ++   +  N    L Y  +       +K +  L   G+   
Sbjct: 69  KASKFRREKLGYLFQNFALIENETVEENLDLGLKYK-KLSKKEKREKKKEALEKVGLNLK 127

Query: 167 LALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV-LFQGG-- 223
           L  Q +Y LSGG++ RVA A+   K P +IL DEP+  LD    + ++  L+ L   G  
Sbjct: 128 LK-QKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKT 186

Query: 224 ILMVSHD 230
           I++V+HD
Sbjct: 187 IIIVTHD 193

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206

>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 81.5 bits (202), Expect = 2e-18
 Identities = 61/252 (24%), Positives = 104/252 (41%), Gaps = 52/252 (20%)

Query: 54  PIISFSDASFGYPGGPILF---KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSS 110
            ++S  + S  Y GG   F    N++  I+    + +VG +G GKST+ +L+AG  +PSS
Sbjct: 2   TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSS 61

Query: 111 GTV--------------FRSAKVRIAVFSQHHVDGLDLSSNPLLYMMR------CFPGVP 150
           G++                   V++ VF Q        S NP   + R         G+ 
Sbjct: 62  GSILLDGKPLAPKKRAKAFYRPVQM-VF-QDP----YSSLNPRRTVGRILSEPLRPHGLS 115

Query: 151 EQKLRAH--LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLD 208
           + + R    L   G+  +   +  + LSGGQ+ R+A A+    +P +++LDEP++ LD  
Sbjct: 116 KSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALD-- 173

Query: 209 AVEALIQGLVL---------FQGGILMVSHDEHLISGSVEELWVVSEGKATP-------F 252
                +Q  +L              L +SHD  L+    + + V+  G+           
Sbjct: 174 ---VSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELL 230

Query: 253 HGTFHDYKKMLQ 264
               H Y + L 
Sbjct: 231 SHPSHPYTRELL 242

Length = 252

>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 82.0 bits (203), Expect = 2e-18
 Identities = 69/221 (31%), Positives = 111/221 (50%), Gaps = 34/221 (15%)

Query: 55  IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
           I+   D  + YP G    K +NF  +    +A++GPNG GKST+     G L+P+SG V 
Sbjct: 1   ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVL 60

Query: 115 RSA-----------KVR--IAVFSQHHVDGL-------DLSSNPLLYMMRCFPGVP---- 150
                         +VR  + +  Q+  D L       D++  PL        G+     
Sbjct: 61  IKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL------GLSKEEV 114

Query: 151 EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAV 210
           E++++  L + G+ G    +P + LSGGQK RVA A I   KP II+LDEP++ LD    
Sbjct: 115 EKRVKEALKAVGMEG-FENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGA 173

Query: 211 EALIQGLV-LFQGGILMV--SHDEHLISGSVEELWVVSEGK 248
             +++ L  L + GI ++  +HD  L+    ++++V+S+GK
Sbjct: 174 SQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGK 214

Length = 275

>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C

 Score = 80.0 bits (198), Expect = 6e-18
 Identities = 62/237 (26%), Positives = 101/237 (42%), Gaps = 69/237 (29%)

Query: 56  ISFSDASFGY-PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
           I F + +F Y PG P+L K+++F I    ++A+VGP+G GKSTIL+L+      SSG++ 
Sbjct: 1   IEFENVTFAYDPGRPVL-KDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSIL 59

Query: 115 RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVP------------------------ 150
                         +DG D+    L  + R    VP                        
Sbjct: 60  --------------IDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDE 105

Query: 151 ---EQKLRAHLG------SFG---VTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILL 198
              E    A +         G   + G   L+    LSGG+K RVA A+   K P I+LL
Sbjct: 106 EVIEAAKAAQIHDKIMRFPDGYDTIVGERGLK----LSGGEKQRVAIARAILKNPPILLL 161

Query: 199 DEPSNHLD-------LDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGK 248
           DE ++ LD         A+  + +G        ++++H    I  + +++ V+ +G+
Sbjct: 162 DEATSALDTHTEREIQAALRDVSKGRTT-----IVIAHRLSTIVNA-DKIIVLKDGR 212

ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236

>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

 Score = 79.6 bits (197), Expect = 7e-18
 Identities = 59/213 (27%), Positives = 94/213 (44%), Gaps = 46/213 (21%)

Query: 55  IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
           +I F + S  YPGG    ++++F I     + + GP+G GKST+LKLI GE +P+ G + 
Sbjct: 1   MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI- 59

Query: 115 RSAKVRIAVFSQHHVDGLDLSSNPLL-------------------YMMRCFP----GVPE 151
                   + + H +  L     P L                   Y     P    G P 
Sbjct: 60  --------LVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPP 111

Query: 152 QKLR----AHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 207
           +++R      L   G+       P   LSGG++ RVA A+    +P ++L DEP+ +LD 
Sbjct: 112 REIRRRVSEVLDLVGLKHKARALPS-QLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDP 170

Query: 208 DAVEALIQGLVLFQG------GILMVSHDEHLI 234
           D    +++   LF+        +LM +HD  L+
Sbjct: 171 DLSWEIMR---LFEEINRLGTTVLMATHDLELV 200

Length = 223

>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 82.4 bits (204), Expect = 8e-18
 Identities = 66/260 (25%), Positives = 101/260 (38%), Gaps = 38/260 (14%)

Query: 37  DPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPIL-FKNLNFGIDLDSRIAMVGPNGIGK 95
           D   +  FP          +   + SF YPG      KN N  +    ++A++G +G GK
Sbjct: 318 DQKPEVTFPDEQTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGK 377

Query: 96  STILKLIAGELQPSSGTV---------FRSAKVR--IAVFSQ--HHVDGLDLSSNPLL-- 140
           ST+L+L+AG   P  G++              +R  I+V +Q  H   G  L  N  L  
Sbjct: 378 STLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSG-TLRDNLRLAN 436

Query: 141 ------YMMRCFPGVPEQKLRAHLGSFGVTGNLALQPM-YTLSGGQKSRVAFAKITFKKP 193
                  +      V    L   L S     N  L      LSGG++ R+A A+      
Sbjct: 437 PDASDEELWAALQQV---GLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDA 493

Query: 194 HIILLDEPSNHLDLDAVEALIQGL--VLFQGGILMVSHDEHLISGSVEELWVVSEGKATP 251
            + LLDEP+  LD      ++  L        +LMV+H    +   ++ + V+  GK   
Sbjct: 494 PLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLE-RMDRIIVLDNGK-II 551

Query: 252 FHGTFH-------DYKKMLQ 264
             GT          YK++ Q
Sbjct: 552 EEGTHAELLANNGRYKRLYQ 571

Length = 573

>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein

 Score = 79.3 bits (196), Expect = 1e-17
 Identities = 56/180 (31%), Positives = 85/180 (47%), Gaps = 31/180 (17%)

Query: 55  IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
           ++   + S  YP G    KN+N  I+    +A++GP+G GKST+L+ I   ++PSSG++ 
Sbjct: 1   MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSIL 60

Query: 115 --------------RSAKVRIAVFSQHH--VDGLDLSSNPLL----------YMMRCFPG 148
                         R  + RI +  QH+  ++ L +  N L            ++  F  
Sbjct: 61  LEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFS- 119

Query: 149 VPEQKLRAH--LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 206
             E K RA   L   G+    A Q    LSGGQ+ RVA A+   ++P +IL DEP   LD
Sbjct: 120 -EEDKERALSALERVGLAD-KAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLD 177

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243

>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA

 Score = 78.2 bits (193), Expect = 1e-17
 Identities = 59/178 (33%), Positives = 97/178 (54%), Gaps = 18/178 (10%)

Query: 67  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF----RSAKVRIA 122
           G  +LF+ L+F ++    + + GPNGIGK+T+L+++AG L+P SG V       A+ R  
Sbjct: 11  GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-D 69

Query: 123 VFSQH-----HVDGL--DLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTL 175
              ++     H+ GL  +LS+   L+      G  ++ +   L + G+TG     P   L
Sbjct: 70  EPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTG-FEDLPAAQL 128

Query: 176 SGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV---LFQGGI-LMVSH 229
           S GQ+ R+A A++   +  + +LDEP+  LD   V AL+ GL+   L +GGI L+ +H
Sbjct: 129 SAGQQRRLALARLWLSRAPLWILDEPTTALDKAGV-ALLAGLLRAHLARGGIVLLTTH 185

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198

>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system

 Score = 79.1 bits (196), Expect = 1e-17
 Identities = 51/170 (30%), Positives = 79/170 (46%), Gaps = 31/170 (18%)

Query: 65  YPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF---------- 114
           YP G    K+++  I+    +A++GP+G GKST+L+ + G ++P+SG+V           
Sbjct: 10  YPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLK 69

Query: 115 ----RSAKVRIAVFSQHH--VDGLD---------LSSNPLLY-MMRCFPGVPEQKLRAH- 157
               R  + +I +  Q    ++ L          L        +   FP   E+K RA  
Sbjct: 70  GKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFP--KEEKQRALA 127

Query: 158 -LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 206
            L   G+    A Q    LSGGQ+ RVA A+   ++P +IL DEP   LD
Sbjct: 128 ALERVGLLD-KAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLD 176

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241

>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system

 Score = 78.5 bits (194), Expect = 1e-17
 Identities = 53/205 (25%), Positives = 85/205 (41%), Gaps = 33/205 (16%)

Query: 72  FKNLNFGIDLD---SRIAMVGPNGIGKSTILKLIAGELQPSSGTV-------FRSAKV-- 119
             +    ID D       + G +G GKST+L+ IAG  +P  GT+       F S K   
Sbjct: 10  LPDFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKIN 69

Query: 120 ------RIA-VFSQH----HVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA 168
                 +I  VF Q+    H   L++  N    + R         +   L   G+   L 
Sbjct: 70  LPPQQRKIGLVFQQYALFPH---LNVRENLAFGLKRKRNREDRISVDELLDLLGLDH-LL 125

Query: 169 LQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV-----LFQGG 223
            +    LSGG+K RVA A+    +P ++LLDEP + LD  A+   +   +          
Sbjct: 126 NRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALD-RALRLQLLPELKQIKKNLNIP 184

Query: 224 ILMVSHDEHLISGSVEELWVVSEGK 248
           ++ V+HD        + + V+ +G+
Sbjct: 185 VIFVTHDLSEAEYLADRIVVMEDGR 209

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214

>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system

 Score = 78.3 bits (194), Expect = 2e-17
 Identities = 50/179 (27%), Positives = 85/179 (47%), Gaps = 27/179 (15%)

Query: 72  FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR----IAVFSQH 127
            K+++F +    RI ++G NG GKST+L+L+AG   P SGTV    +V     +      
Sbjct: 38  LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNP 97

Query: 128 HVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLG---SFGVTGNLALQPMYTLSGGQKSRVA 184
            + G +   N  +Y+     G+  +++   +     F   G+    P+ T S G K+R+A
Sbjct: 98  ELTGRE---N--IYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLA 152

Query: 185 FAKITFKKPHIILLDEPSNHLDLDAV---------EALIQGLVLFQGGILMVSHDEHLI 234
           FA  T  +P I+L+DE      + AV         +  ++ L+     +++VSHD   I
Sbjct: 153 FAIATALEPDILLIDE------VLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSI 205

The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 80.6 bits (200), Expect = 3e-17
 Identities = 54/197 (27%), Positives = 77/197 (39%), Gaps = 54/197 (27%)

Query: 39  DYKFEF---PTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSR---------IA 86
               EF   P  D+     ++ + D +         F        L+           I 
Sbjct: 321 PEPIEFEERPPRDESERETLVEYPDLTKKLGD----FS-------LEVEGGEIYEGEVIG 369

Query: 87  MVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCF 146
           +VGPNGIGK+T  KL+AG L+P  G V    +++I+   Q              Y+   +
Sbjct: 370 IVGPNGIGKTTFAKLLAGVLKPDEGEV--DPELKISYKPQ--------------YIKPDY 413

Query: 147 PGVPEQKLRAHLGSFG-------VTGNLALQPMY-----TLSGGQKSRVAFAKITFKKPH 194
            G  E  LR+     G       +   L L+ +       LSGG+  RVA A    +   
Sbjct: 414 DGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDAD 473

Query: 195 IILLDEPSNHLDLDAVE 211
           + LLDEPS HLD   VE
Sbjct: 474 LYLLDEPSAHLD---VE 487

Length = 590

>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D

 Score = 76.4 bits (189), Expect = 3e-17
 Identities = 50/183 (27%), Positives = 78/183 (42%), Gaps = 38/183 (20%)

Query: 56  ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS-SGTVF 114
           I   + S   P G +L K+L+F I    R+ + GP+G GKS++ + +AG L P  SG + 
Sbjct: 1   IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAG-LWPWGSGRIG 59

Query: 115 RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMY- 173
                 +    Q           P  Y+                      G L  Q +Y 
Sbjct: 60  MPEGEDLLFLPQR----------P--YL--------------------PLGTLREQLIYP 87

Query: 174 ---TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHD 230
               LSGG++ R+AFA++   KP  + LDE ++ LD ++ + L Q L      ++ V H 
Sbjct: 88  WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHR 147

Query: 231 EHL 233
             L
Sbjct: 148 PSL 150

Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166

>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter

 Score = 76.3 bits (188), Expect = 9e-17
 Identities = 55/203 (27%), Positives = 91/203 (44%), Gaps = 28/203 (13%)

Query: 56  ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115
           I F + +  YP G      +N  I     + +VGP+G GKST+LKLI  E  P+SGT+  
Sbjct: 1   IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRV 60

Query: 116 SAKV-------RIAVFSQHHVDGLDLSSNPLLY----------MMRCFPGVPEQKLR--- 155
           + +         I    +    G+      LL            +    GVP +++R   
Sbjct: 61  NGQDVSDLRGRAIPYLRRKI--GVVFQDFRLLPDRNVYENVAFALEVT-GVPPREIRKRV 117

Query: 156 -AHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLD---AVE 211
            A L   G++      P   LSGG++ RVA A+     P I++ DEP+ +LD D    + 
Sbjct: 118 PAALELVGLSHKHRALPA-ELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIM 176

Query: 212 ALIQGLVLFQGGILMVSHDEHLI 234
            L++ +      +++ +H + L+
Sbjct: 177 NLLKKINKAGTTVVVATHAKELV 199

FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214

>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A

 Score = 76.0 bits (188), Expect = 1e-16
 Identities = 47/181 (25%), Positives = 83/181 (45%), Gaps = 31/181 (17%)

Query: 73  KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF----------RSAKVRIA 122
            +L+  +       ++G NG GK+T LK++ GEL+P+SGT +          ++A+  + 
Sbjct: 19  DDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLG 78

Query: 123 VFSQHHVDGLD--LSSNPLLYMMRCFPGVPEQKLRA----HLGSFGVTGNLALQPMYTLS 176
              Q   D L   L+    L       G+P+ +++      L   G+T   A +   TLS
Sbjct: 79  YCPQF--DALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTD-KANKRARTLS 135

Query: 177 GGQKSRVAFAKITFKKPHIILLDEPSNHLD-------LDAVEALIQGLVLFQGGILMVSH 229
           GG K +++ A      P ++LLDEP++ LD        D +  + +G       I++ +H
Sbjct: 136 GGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGR-----SIILTTH 190

Query: 230 D 230
            
Sbjct: 191 S 191

The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220

>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 77.7 bits (192), Expect = 2e-16
 Identities = 51/211 (24%), Positives = 88/211 (41%), Gaps = 48/211 (22%)

Query: 52  GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 111
             P +   + S  +     +  +++  I     + ++GP+G GK+T+L++IAG  QPSSG
Sbjct: 2   PKPALEIRNVSKSFGDFTAV-DDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG 60

Query: 112 TVFRSAKVRIAVFSQHHVDGLDLSSNPL---------------------------LYMMR 144
            +               +DG D++  P                            L + +
Sbjct: 61  EIL--------------LDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRK 106

Query: 145 CFPG-VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN 203
                  + ++   L   G+ G    +P   LSGGQ+ RVA A+    +P ++LLDEP +
Sbjct: 107 KLKKAEIKARVEEALELVGLEGFADRKPH-QLSGGQQQRVALARALVPEPKVLLLDEPLS 165

Query: 204 HLDLDAVEALIQGLV--LFQGGI--LMVSHD 230
            LD    E + + L     + GI  + V+HD
Sbjct: 166 ALDAKLREQMRKELKELQRELGITFVYVTHD 196

Length = 352

>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 77.0 bits (190), Expect = 2e-16
 Identities = 47/177 (26%), Positives = 78/177 (44%), Gaps = 20/177 (11%)

Query: 73  KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV-------FRSAKVRI---- 121
           ++++F I     +  +G NG GKST LK++ G L P+SG V       FR  +  +    
Sbjct: 41  QDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIG 100

Query: 122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSF----GVTGNLALQPMYTLSG 177
            V  Q      DL +   L +++    +P+ +    L        + G L   P+  LS 
Sbjct: 101 LVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLK-WPVRKLSL 159

Query: 178 GQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL----VLFQGGILMVSHD 230
           GQ+ R   A      P ++ LDEP+  LD++A   + + L       Q  +L+ +H 
Sbjct: 160 GQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHI 216

Length = 325

>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA

 Score = 75.4 bits (186), Expect = 3e-16
 Identities = 55/194 (28%), Positives = 83/194 (42%), Gaps = 18/194 (9%)

Query: 73  KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV----FRSAKVRI------- 121
           K ++F I+    +  +GPNG GK+T LK+++G LQP+SG V        K R        
Sbjct: 38  KGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIG 97

Query: 122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPE---QKLRAHLGSFGVTGNLALQPMYTLSGG 178
            VF Q      DL      Y++     +P    +K    L        L   P+  LS G
Sbjct: 98  VVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLG 157

Query: 179 QKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLI 234
           Q+ R   A     +P I+ LDEP+  LD+ A E +   L  +       +L+ SH    I
Sbjct: 158 QRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDI 217

Query: 235 SGSVEELWVVSEGK 248
                 + V+ +G+
Sbjct: 218 EALARRVLVIDKGR 231

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236

>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

 Score = 77.7 bits (192), Expect = 3e-16
 Identities = 64/258 (24%), Positives = 101/258 (39%), Gaps = 47/258 (18%)

Query: 4   FIDKFRYNAK-RASL--VQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSD 60
           FID +   A  RA+L  +    +ALE      E       + +F    D      I+  +
Sbjct: 342 FIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDF----DDNADHGITLEN 397

Query: 61  ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS-SGTVFRSAKV 119
            S   P G  L   LNF +    R+ + G +G GK+++L+ +AG L P  SG +   A  
Sbjct: 398 LSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAG-LWPWGSGRISMPADS 456

Query: 120 RIAVFSQHHVDGLDLSSNPLLYMMR-------CFPG----VPEQKLRAHL---------G 159
            +    Q           P  Y+ +       C+P       + +L A L          
Sbjct: 457 ALLFLPQR----------P--YLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAE 504

Query: 160 SFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL-- 217
                          LSGG++ R+AFA++   KP  + LDE ++ LD +  + L Q L  
Sbjct: 505 RLDEEDRWDR----VLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKE 560

Query: 218 VLFQGGILMVSHDEHLIS 235
            L    ++ V H   L +
Sbjct: 561 ELPDATVISVGHRPTLWN 578

Length = 604

>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE

 Score = 74.6 bits (184), Expect = 3e-16
 Identities = 58/207 (28%), Positives = 92/207 (44%), Gaps = 34/207 (16%)

Query: 55  IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
           +I F + S  YPGG     +++  I     + + GP+G GK+T+LKL+ G L PS G   
Sbjct: 1   MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRG--- 57

Query: 115 RSAKVRIAVFSQHHVDGLDLSS-----------NPLLYMMRCFP---------GVPEQKL 154
              +VRIA    + + G  L               LL     +          G  E+++
Sbjct: 58  ---QVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREI 114

Query: 155 R----AHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAV 210
           +    A L   G+       P   LSGG++ RVA A+     P ++L DEP+ +LD D  
Sbjct: 115 QRRVGAALRQVGLEHKADAFPE-QLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLS 173

Query: 211 E---ALIQGLVLFQGGILMVSHDEHLI 234
           E    L++ L      +++ +HD  L+
Sbjct: 174 ERILDLLKRLNKRGTTVIVATHDLSLV 200

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214

>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C

 Score = 75.0 bits (185), Expect = 3e-16
 Identities = 49/206 (23%), Positives = 77/206 (37%), Gaps = 74/206 (35%)

Query: 56  ISFSDASFGYPG--GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
           + F + +F YPG   P+L ++++  I     +A+VGP+G GKST++ LI       SG +
Sbjct: 1   VEFKNVTFRYPGDGPPVL-RDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI 59

Query: 114 FRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLG-----SFGVTGNLA 168
                          +DG D+                   LR  +G      F     +A
Sbjct: 60  L--------------IDGHDVR------------DYTLASLRRQIGLVSQDVFLFNDTVA 93

Query: 169 LQPMY---------------------------------------TLSGGQKSRVAFAKIT 189
               Y                                        LSGGQ+ R+A A+  
Sbjct: 94  ENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARAL 153

Query: 190 FKKPHIILLDEPSNHLDLDAVEALIQ 215
            K P I++LDE ++ LD ++ E L+Q
Sbjct: 154 LKDPPILILDEATSALDTES-ERLVQ 178

MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234

>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 76.0 bits (187), Expect = 3e-16
 Identities = 64/244 (26%), Positives = 109/244 (44%), Gaps = 43/244 (17%)

Query: 55  IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
           I+   + ++ Y  G    K +N  I      A++G NG GKST+ + + G L+PSSG + 
Sbjct: 5   ILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRIL 64

Query: 115 RSAK-----------VRIAV-----------FSQHHVDGLDLSSNPLLYMMRCFPGVPEQ 152
              K           +R +V           FS       D+S   +         +PE 
Sbjct: 65  FDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQ--DVSFGAVNL------KLPED 116

Query: 153 KLRAH----LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLD 208
           ++R      L   G+  +L  +P + LS GQK RVA A +   +P +++LDEP+  LD  
Sbjct: 117 EVRKRVDNALKRTGIE-HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPM 175

Query: 209 AVEALIQGLVLFQGG----ILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY---KK 261
            V  +++ LV  Q      I++ +HD  ++    + ++V+ EG+     G   +    K+
Sbjct: 176 GVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVI-LQGNPKEVFAEKE 234

Query: 262 MLQS 265
           ML+ 
Sbjct: 235 MLRK 238

Length = 283

>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional

 Score = 74.1 bits (183), Expect = 5e-16
 Identities = 52/195 (26%), Positives = 90/195 (46%), Gaps = 24/195 (12%)

Query: 67  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF----RSAKVRIA 122
              ILF  L+F ++    + + GPNG GK+++L+++AG  +P +G V        + R  
Sbjct: 12  DERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDE 71

Query: 123 VFSQ----HHVDGL--DLSS--NPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYT 174
                    H  G+  +L++  N L +  R      ++ L   L   G+ G   + P+  
Sbjct: 72  YHQDLLYLGHQPGIKTELTALEN-LRFYQRLHGPGDDEALWEALAQVGLAGFEDV-PVRQ 129

Query: 175 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF-----QGGILMVS- 228
           LS GQ+ RVA A++   +  + +LDEP   +D   V  L     L      QGG+++++ 
Sbjct: 130 LSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEA---LLAQHAEQGGMVILTT 186

Query: 229 -HDEHLISGSVEELW 242
             D  + S  V +L 
Sbjct: 187 HQDLPVASDKVRKLR 201

Length = 204

>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system

 Score = 74.0 bits (183), Expect = 9e-16
 Identities = 53/205 (25%), Positives = 92/205 (44%), Gaps = 30/205 (14%)

Query: 73  KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV-FRSAKV------RIA--- 122
            +++F +       ++GPNG GK+T+  LI+G L+P+SG+V F    +       IA   
Sbjct: 17  DDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLG 76

Query: 123 ---------VFSQHHVD-----GLDLSSNPLLYMMRCFPGVPEQKLRAH--LGSFGVTGN 166
                    +F +  V           +   L + R      E + RA   L   G+   
Sbjct: 77  IGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLAD- 135

Query: 167 LALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS---NHLDLDAVEALIQGLVLFQGG 223
           LA +P   LS GQ+ R+  A+     P ++LLDEP+   N  + + +  LI+ L      
Sbjct: 136 LADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGIT 195

Query: 224 ILMVSHDEHLISGSVEELWVVSEGK 248
           +L+V HD  ++    + + V+ +G+
Sbjct: 196 VLLVEHDMDVVMSLADRVTVLDQGR 220

The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236

>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein

 Score = 73.0 bits (179), Expect = 2e-15
 Identities = 60/203 (29%), Positives = 98/203 (48%), Gaps = 30/203 (14%)

Query: 71  LFKNLNFGIDLD----SRIAMVGPNGIGKSTILKLIAGELQPSSGT-------VFRSAKV 119
            +++L    DL+      +A++GP+G GKST+L LIAG ++P+SG+           A  
Sbjct: 9   EYEHLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPY 68

Query: 120 RIAV---FSQHHV-------DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL 169
           +  V   F ++++         + L  +P L +        ++K+       G+   L  
Sbjct: 69  QRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLN----AEQQEKVVDAAQQVGIADYLDR 124

Query: 170 QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD-LDAVE--ALIQGLVLFQG-GIL 225
            P   LSGGQ+ RVA A+   +   I+LLDEP + LD L   E  AL++ L   +   +L
Sbjct: 125 LPE-QLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLL 183

Query: 226 MVSHDEHLISGSVEELWVVSEGK 248
           MV+H          ++ VVS+GK
Sbjct: 184 MVTHHLSDARAIASQIAVVSQGK 206

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213

>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 73.9 bits (182), Expect = 3e-15
 Identities = 48/181 (26%), Positives = 80/181 (44%), Gaps = 23/181 (12%)

Query: 72  FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF------------RSAKV 119
             +++  I     +A++GP+G GKST+L++IAG   P +G +                  
Sbjct: 18  LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDR 77

Query: 120 RIAVFSQHH--VDGLDLSSNPL--LYMMRCFPGVPEQKLRAH--LGSFGVTGNLALQPMY 173
           ++    QH+     + ++ N    L + +  P   E + R    L    + G LA +   
Sbjct: 78  KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEG-LADRYPA 136

Query: 174 TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSH 229
            LSGGQ+ RVA A+    +P ++LLDEP   LD    + L + L           + V+H
Sbjct: 137 QLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTH 196

Query: 230 D 230
           D
Sbjct: 197 D 197

Length = 345

>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

 Score = 73.8 bits (182), Expect = 3e-15
 Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 37/175 (21%)

Query: 56  ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF- 114
           +   +    +    +L K++N  I+    + ++GP+G GKST+L++IAG  +P+SG +  
Sbjct: 4   LELKNVRKSFGSFEVL-KDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILI 62

Query: 115 --------RSAKVRIA-VFSQHHVDGLDLSSNPLLYMM-----RCFP----GVPEQKLRA 156
                      K  IA VF  +           L   M       F     GVP+ ++  
Sbjct: 63  DGRDVTDLPPEKRGIAMVFQNY----------ALYPHMTVYENIAFGLKLRGVPKAEIDK 112

Query: 157 HLGSFGVTGNLALQPM-----YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 206
            +    V   L L+ +       LSGGQ+ RVA A+   +KP + LLDEP ++LD
Sbjct: 113 RVKE--VAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLD 165

Length = 338

>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 72.9 bits (180), Expect = 3e-15
 Identities = 46/162 (28%), Positives = 68/162 (41%), Gaps = 40/162 (24%)

Query: 78  GIDLDSR----IAMVGPNGIGKSTILKLIAGELQPSSGTVF------------RSAKVRI 121
            + L  R    +A++GPNG GKST+L+ ++GEL P SG V               A+ R 
Sbjct: 20  DVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRR- 78

Query: 122 AVFSQHH----------VDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQP 171
           AV  QH           V  +  + + L         +    L        +   LA + 
Sbjct: 79  AVLPQHSSLSFPFTVEEVVAMGRAPHGLSR--AEDDALVAAALAQ----VDLAH-LAGRD 131

Query: 172 MYTLSGGQKSRVAFAKI------TFKKPHIILLDEPSNHLDL 207
              LSGG++ RV  A++          P  +LLDEP++ LDL
Sbjct: 132 YPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDL 173

Length = 258

>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein

 Score = 71.0 bits (174), Expect = 7e-15
 Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 16/185 (8%)

Query: 67  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV--------FRSAK 118
            G  LF  L+F +     + + GPNG GK+T+L+++AG   P +G V        F+   
Sbjct: 11  DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDS 70

Query: 119 VRIAVFSQHHVDGLD--LSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLS 176
           +   +    H  G+   LS    L          EQ   A L   G+ G    +P+  LS
Sbjct: 71  IARGLLYLGHAPGIKTTLSVLENLRFWHADHSD-EQVEEA-LARVGLNG-FEDRPVAQLS 127

Query: 177 GGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV--LFQGG-ILMVSHDEHL 233
            GQ+ RVA A++      + +LDEP+  LD   V    + +     +GG +++ +H +  
Sbjct: 128 AGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLG 187

Query: 234 ISGSV 238
           +S + 
Sbjct: 188 LSEAG 192

CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201

>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 71.3 bits (175), Expect = 7e-15
 Identities = 55/188 (29%), Positives = 83/188 (44%), Gaps = 25/188 (13%)

Query: 69  PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV--------------- 113
            IL K +   +     +A+VGP+G GKST+L ++AG   PSSG V               
Sbjct: 24  SIL-KGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDAR 82

Query: 114 --FRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAH--LGSFGVTGNLAL 169
              R+  V     S H +  L    N  L +        + +  A   L + G+   L  
Sbjct: 83  AALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTH 142

Query: 170 QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL---DAVEALIQGLVLFQGGIL- 225
            P   LSGG++ RVA A+    +P ++  DEP+ +LD    D +  L+  L   +G  L 
Sbjct: 143 YP-AQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLV 201

Query: 226 MVSHDEHL 233
           +V+HD  L
Sbjct: 202 LVTHDPQL 209

Length = 228

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 73.4 bits (181), Expect = 8e-15
 Identities = 29/90 (32%), Positives = 51/90 (56%)

Query: 170 QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSH 229
             +  LSGG++ RVA  ++   KP ++LLDEP+NHLD ++V  L Q L  + G ++ V+H
Sbjct: 157 ADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTH 216

Query: 230 DEHLISGSVEELWVVSEGKATPFHGTFHDY 259
           D + +      +  +  G+  P+ G +  +
Sbjct: 217 DRYFLDNVAGWILELDRGRGIPWEGNYSSW 246

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family

 Score = 71.2 bits (175), Expect = 8e-15
 Identities = 58/185 (31%), Positives = 86/185 (46%), Gaps = 27/185 (14%)

Query: 70  ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV------------FRSA 117
           +LF ++N  I+    + + GP+G GK+T+L LI G      G++                
Sbjct: 20  VLF-DINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELV 78

Query: 118 KVR--IAVFSQHH--VDGLDLSSN---PLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQ 170
           ++R  I    Q H  +  L    N    L            ++ RA L + G+  +L   
Sbjct: 79  QLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYY 138

Query: 171 PMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD----LDAVEALIQGLVLFQG-GIL 225
           P + LSGGQK RVA A+    +P ++L DEP+  LD     D VE L+Q L   QG  IL
Sbjct: 139 P-HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVE-LMQKLAREQGCTIL 196

Query: 226 MVSHD 230
           +V+HD
Sbjct: 197 IVTHD 201

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220

>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

 Score = 73.2 bits (180), Expect = 9e-15
 Identities = 62/208 (29%), Positives = 93/208 (44%), Gaps = 38/208 (18%)

Query: 33  EVVNDPDYKFEFPTPDDRPGPPIISFSDASFGY-PGGPILFKNLNFGIDLDSRIAMVGPN 91
           EV + PD     P    R G   ++F + SF Y P  PIL   ++F I L   +A+VG +
Sbjct: 245 EVSDAPDAP---PLWPVRLG--AVAFINVSFAYDPRRPIL-NGISFTIPLGKTVAIVGES 298

Query: 92  GIGKSTILKLIAGELQPSSGTVF-----------RSAKVRIAVFSQHHVDGLDLSSNPLL 140
           G GKSTIL+L+      +SG++            +S +  I +  Q  V    L ++ + 
Sbjct: 299 GAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTV----LFNDTIA 354

Query: 141 YMMRCFPGVP----EQKLR----AHLGSFGVTGNLALQPM-----YTLSGGQKSRVAFAK 187
           Y ++   G P    E+       A +  F  +               LSGG+K RVA A+
Sbjct: 355 YNIKY--GRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIAR 412

Query: 188 ITFKKPHIILLDEPSNHLDLDAVEALIQ 215
              K P I++LDE ++ LD    E  IQ
Sbjct: 413 TILKNPPILILDEATSALDTHT-EQAIQ 439

Length = 497

>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

 Score = 70.8 bits (174), Expect = 1e-14
 Identities = 57/204 (27%), Positives = 90/204 (44%), Gaps = 30/204 (14%)

Query: 70  ILFKNLNFGIDLD----SRIAMVGPNGIGKSTILKLIAGELQPSSGTVF-------RSAK 118
             + +L    DL       +A++GP+G GKST+L LIAG   P+SG +         S  
Sbjct: 9   FSYGHLPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPP 68

Query: 119 VRIAV---FSQH----HVD---GLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA 168
               V   F ++    H+     + L  +P L +         +K+ A     G+ G L 
Sbjct: 69  AERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKL----NAEQREKVEAAAAQVGLAGFLK 124

Query: 169 LQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVE---ALIQGLVLFQG-GI 224
             P   LSGGQ+ RVA A+   ++  I+LLDEP + LD        AL+  L   +   +
Sbjct: 125 RLPG-ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTL 183

Query: 225 LMVSHDEHLISGSVEELWVVSEGK 248
           LMV+H     +   + +  +  G+
Sbjct: 184 LMVTHHPEDAARIADRVVFLDNGR 207

Length = 231

>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 71.1 bits (175), Expect = 1e-14
 Identities = 59/220 (26%), Positives = 94/220 (42%), Gaps = 45/220 (20%)

Query: 67  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV-FRSAKV------ 119
           GG     +++  +     + ++GPNG GK+T+  LI G  +PSSGTV FR   +      
Sbjct: 15  GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPH 74

Query: 120 RIA------------VFS-----------QHHVDGLDLSSNPLLYMMRCFPGVPEQKLRA 156
           RIA            +F             H   GL                  E++ R 
Sbjct: 75  RIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKE------EREARE 128

Query: 157 H----LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS---NHLDLDA 209
                L   G+   LA +P   LS GQ+ R+  A+    +P ++LLDEP+   N  + + 
Sbjct: 129 RARELLEFVGLG-ELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEE 187

Query: 210 VEALIQGLVLFQG-GILMVSHDEHLISGSVEELWVVSEGK 248
           +  LI+ L    G  IL++ HD  L+ G  + + V++ G+
Sbjct: 188 LAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGE 227

Length = 250

>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C

 Score = 71.0 bits (174), Expect = 1e-14
 Identities = 57/199 (28%), Positives = 90/199 (45%), Gaps = 36/199 (18%)

Query: 46  TPDDRPGPPIISFSDASFGYPGGP--ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIA 103
            PD   G  I+ F + +F YP  P  ++ ++++F +      A+VGP+G GKST++ L+ 
Sbjct: 4   APDHLKG--IVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLE 61

Query: 104 GELQPSSGTVFRSAKV-----------RIAVFSQHHV-DGLDLSSNPLLYMMRC-FPGVP 150
              QP  G V    K            ++++  Q  V     L  N    +  C F  V 
Sbjct: 62  NFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVK 121

Query: 151 EQKLRAHLGSF------------GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILL 198
           E   +AH  SF            G  G+        LSGGQK RVA A+   + P +++L
Sbjct: 122 EAAQKAHAHSFISELASGYDTEVGEKGSQ-------LSGGQKQRVAIARALIRNPQVLIL 174

Query: 199 DEPSNHLDLDAVEALIQGL 217
           DE ++ LD ++ + + Q L
Sbjct: 175 DEATSALDAESEQQVQQAL 193

TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226

>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C

 Score = 71.8 bits (176), Expect = 1e-14
 Identities = 65/216 (30%), Positives = 107/216 (49%), Gaps = 20/216 (9%)

Query: 52  GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 111
               + FS+      G P+L KN+N  I+    +A+ G  G GK+++L LI GEL+PS G
Sbjct: 36  DDNNLFFSN--LCLVGAPVL-KNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEG 92

Query: 112 TVFRSAKVRIAVFSQHH--VDGLDLSSNPLLYM----MRCFPGVPEQKLRAHLGSFGVTG 165
            +  S   RI+  SQ    + G  +  N +  +     R    V   +L   +  F    
Sbjct: 93  KIKHSG--RISFSSQFSWIMPG-TIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKD 149

Query: 166 NLAL-QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL----DAVEALIQGLVLF 220
           N  L +   TLSGGQ++R++ A+  +K   + LLD P  +LD+    +  E+ +  L+  
Sbjct: 150 NTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMAN 209

Query: 221 QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTF 256
           +  IL+ S  EHL     +++ ++ EG +  F+GTF
Sbjct: 210 KTRILVTSKMEHL--KKADKILILHEGSSY-FYGTF 242

The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282

>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional

 Score = 72.2 bits (177), Expect = 1e-14
 Identities = 52/167 (31%), Positives = 76/167 (45%), Gaps = 20/167 (11%)

Query: 56  ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV-- 113
           I  +  S  Y G   +   L+F +       ++GPNG GKSTI ++I G   P +G +  
Sbjct: 42  IDLAGVSKSY-GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITV 100

Query: 114 --------FRSAKVRIAVFSQHHVDGLDLS---SNPLLYMMRCFPGVPEQKLRAHLGS-- 160
                    R A+ RI V  Q   D LDL       LL   R F G+  +++ A + S  
Sbjct: 101 LGVPVPARARLARARIGVVPQ--FDNLDLEFTVRENLLVFGRYF-GMSTREIEAVIPSLL 157

Query: 161 -FGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 206
            F    + A   +  LSGG K R+  A+     P +++LDEP+  LD
Sbjct: 158 EFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLD 204

Length = 340

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 72.2 bits (178), Expect = 2e-14
 Identities = 51/211 (24%), Positives = 80/211 (37%), Gaps = 45/211 (21%)

Query: 52  GPPIISFSDASFGYPGGPILFKNLNFGIDLDSR----IAMVGPNGIGKSTILKLIAGELQ 107
            PP++     S  + G   L      G+ L  R     A++G NG GKST++K+++G   
Sbjct: 5   TPPLLELRGISKSFGGVKALD-----GVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP 59

Query: 108 PSSGTV-FRSAKVR-----------IAVFSQHHVDGLDLSSNPLL----------YMMRC 145
           P SG +      V            IA   Q      +LS  P L             R 
Sbjct: 60  PDSGEILIDGKPVAFSSPRDALAAGIATVHQ------ELSLVPNLSVAENIFLGREPTRR 113

Query: 146 FPGVPEQKLR----AHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP 201
           F  +  + +R      L   G+  +     +  LS  Q+  V  A+       +++LDEP
Sbjct: 114 FGLIDRKAMRRRARELLARLGLDIDPD-TLVGDLSIAQRQMVEIARALSFDARVLILDEP 172

Query: 202 SNHLDLDAVEALIQGLVLF--QG-GILMVSH 229
           +  L +   E L   +     QG  I+ +SH
Sbjct: 173 TAALTVKETERLFDLIRRLKAQGVAIIYISH 203

Length = 500

>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein

 Score = 72.1 bits (177), Expect = 2e-14
 Identities = 58/226 (25%), Positives = 98/226 (43%), Gaps = 47/226 (20%)

Query: 56  ISFSDASFGYPGGP--ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
           I F D SF YP  P   + K L F +     +A+VGP+G GKST+  L+    QP+ G V
Sbjct: 479 IEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQV 538

Query: 114 FRSAKVRIAVFSQH--HVDGLDLSSNPLLY-----------MMRCFPGVPEQKLR----- 155
                V +  +  H  H     +   P+L+           +       P++++      
Sbjct: 539 LLDG-VPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDT----PDEEIMAAAKA 593

Query: 156 AHLGSF------------GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN 203
           A+   F            G  G+        LSGGQK R+A A+   +KP +++LDE ++
Sbjct: 594 ANAHDFIMEFPNGYDTEVGEKGSQ-------LSGGQKQRIAIARALVRKPRVLILDEATS 646

Query: 204 HLDLDAVEALIQGLVLFQG-GILMVSHDEHLISGSVEELWVVSEGK 248
            LD    E L+Q         +L+++H    +  + +++ V+ +G 
Sbjct: 647 ALDA-ECEQLLQESRSRASRTVLLIAHRLSTVERA-DQILVLKKGS 690

[Transport and binding proteins, Other]. Length = 711

>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed

 Score = 71.4 bits (175), Expect = 3e-14
 Identities = 58/232 (25%), Positives = 97/232 (41%), Gaps = 50/232 (21%)

Query: 54  PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
           P+I  SD S  +    +L   ++  +   S + +VGPNG GK+T+L+ I G L P++GTV
Sbjct: 2   PMIDVSDLSVEFGDTTVL-DGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTV 60

Query: 114 FRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQ-------KLRA--------HL 158
                          V G D+ +       R    VP+         +R         H 
Sbjct: 61  --------------LVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHR 106

Query: 159 GSFGVTGN-----------------LALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP 201
             F                       A +P+ +LSGG++ RV  A+   +   ++LLDEP
Sbjct: 107 SRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEP 166

Query: 202 SNHLDLD-AVE--ALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKAT 250
           +  LD++  V    L++ LV      +   HD  L +   +EL ++++G+  
Sbjct: 167 TASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVR 218

Length = 402

>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 70.1 bits (172), Expect = 4e-14
 Identities = 61/215 (28%), Positives = 98/215 (45%), Gaps = 24/215 (11%)

Query: 55  IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
           II   D  F Y  G    K L+  I   S+ A++GPNG GKST+L  + G   P  G V 
Sbjct: 4   IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVK 63

Query: 115 RSAKV-----------RIAVFSQHHVDGL-------DLSSNPLLYMMRCFPGVPEQKLRA 156
              +            ++ +  Q   D +       D++  P+   M       E+++  
Sbjct: 64  VMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPV--NMGLDKDEVERRVEE 121

Query: 157 HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQG 216
            L +  +  +   +P Y LS GQK RVA A +    P +I+LDEP  +LD    E L++ 
Sbjct: 122 ALKAVRMW-DFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEI 180

Query: 217 L-VLFQGG--ILMVSHDEHLISGSVEELWVVSEGK 248
           L  L   G  +++ +HD  L +   +++ V+ EG+
Sbjct: 181 LDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGR 215

Length = 274

>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

 Score = 69.4 bits (170), Expect = 4e-14
 Identities = 52/195 (26%), Positives = 89/195 (45%), Gaps = 29/195 (14%)

Query: 73  KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGL 132
            N++  +  +S   ++GPNG GKST+LK+I G L+P+SG +         +F  H     
Sbjct: 17  NNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEI---------IFDGHPWTRK 67

Query: 133 DLSS------NPLLY---------MMRC-FPGVPEQKLRAHLGSFGVTGNLALQPMYTLS 176
           DL        +P LY          +     G+P+ ++   L    +T N   +     S
Sbjct: 68  DLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLT-NTGKKKAKQFS 126

Query: 177 GGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QG-GILMVSHDEHL 233
            G K R+  A      P +++LDEP+N LD   ++ L + +  F  QG  +++ SH    
Sbjct: 127 LGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSE 186

Query: 234 ISGSVEELWVVSEGK 248
           +    + + ++SEG 
Sbjct: 187 VQQLADHIGIISEGV 201

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223

>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional

 Score = 70.0 bits (171), Expect = 4e-14
 Identities = 51/166 (30%), Positives = 85/166 (51%), Gaps = 23/166 (13%)

Query: 62  SFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV-------- 113
           + GY G   + +NL   I      A++GPNG GKST+L+ ++  + P+ G V        
Sbjct: 14  TLGY-GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQ 72

Query: 114 -FRSAKV--RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVP---------EQKLRAHLGSF 161
            + S +V  RI + +Q+     D++   L+   R +P  P         E+ +   + + 
Sbjct: 73  HYASKEVARRIGLLAQNATTPGDITVQELVARGR-YPHQPLFTRWRKEDEEAVTKAMQAT 131

Query: 162 GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 207
           G+T +LA Q + TLSGGQ+ R   A +  ++  I+LLDEP+  LD+
Sbjct: 132 GIT-HLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDI 176

Length = 265

>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional

 Score = 68.7 bits (168), Expect = 5e-14
 Identities = 56/197 (28%), Positives = 90/197 (45%), Gaps = 17/197 (8%)

Query: 48  DDRP---GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG 104
              P    PP+++    +F     P+ F  L+F +D    + + G NG GK+T+L+++AG
Sbjct: 1   MIEPLHTAPPLLAAHALAFSRNEEPV-FGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAG 59

Query: 105 ELQPSSGTVFRSAK-VRIAVFSQH-----HVDGL--DLSSNPLLYMMRCFPGV-PEQKLR 155
            L   SG +    K       S+      H+ GL  DLS+   L+ +    G   +Q   
Sbjct: 60  LLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPG 119

Query: 156 AHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA---VEA 212
           + L   G+ G      +  LS GQK R+A A++      + LLDEP  +LDL+    V  
Sbjct: 120 SALAIVGLAGY-EDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNR 178

Query: 213 LIQGLVLFQGGILMVSH 229
           +I   +   G  L+ +H
Sbjct: 179 MISAHLRGGGAALVTTH 195

Length = 214

>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 67.5 bits (166), Expect = 6e-14
 Identities = 41/168 (24%), Positives = 71/168 (42%), Gaps = 40/168 (23%)

Query: 65  YPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVF 124
           + G   L   ++  +      A++G NG GKST++K+++G  +P SG +           
Sbjct: 10  FGGVKAL-DGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL---------- 58

Query: 125 SQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVA 184
               VDG ++S              P    RA     G+        +Y LS G++  V 
Sbjct: 59  ----VDGKEVS-----------FASPRDARRA-----GI------AMVYQLSVGERQMVE 92

Query: 185 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QG-GILMVSH 229
            A+   +   +++LDEP+  L    VE L + +     QG  ++ +SH
Sbjct: 93  IARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISH 140

This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163

>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 69.4 bits (170), Expect = 6e-14
 Identities = 54/203 (26%), Positives = 80/203 (39%), Gaps = 68/203 (33%)

Query: 54  PIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGT 112
            II F + SF Y        K+++F I      ++VG NG GKSTI KL+ G  +  SG 
Sbjct: 6   SIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGE 65

Query: 113 VFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLG------------- 159
           +F         ++   +   +                  +KLR H+G             
Sbjct: 66  IF---------YNNQAITDDNF-----------------EKLRKHIGIVFQNPDNQFVGS 99

Query: 160 ------SFGVTGNL------------ALQP--MY--------TLSGGQKSRVAFAKITFK 191
                 +FG+  +             AL+   M          LSGGQK RVA A +   
Sbjct: 100 IVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLAL 159

Query: 192 KPHIILLDEPSNHLDLDAVEALI 214
            P +I+LDE ++ LD DA + L+
Sbjct: 160 NPSVIILDEATSMLDPDARQNLL 182

Length = 269

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 70.7 bits (174), Expect = 6e-14
 Identities = 66/278 (23%), Positives = 108/278 (38%), Gaps = 73/278 (26%)

Query: 45  PTPDDRPGPPIISFSDASFGYPGGPILF-------KNLNFGIDLDSR----IAMVGPNGI 93
           P        P++S  + S  Y     LF       K ++  +  D R    + +VG +G 
Sbjct: 270 PRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVD-DVSFDLREGETLGLVGESGS 328

Query: 94  GKSTILKLIAGELQPSSGTVFRS---------------AKVRIAVFSQHHVDGL------ 132
           GKST+ +++AG L PSSG++                   ++++ VF Q     L      
Sbjct: 329 GKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQM-VF-QDPYSSLNPRMTV 386

Query: 133 -DLSSNPLLYMMRCFPGVPEQKLRAHLGSF----GVTGNLALQPMYTLSGGQKSRVAFAK 187
            D+ + PL    R   G    + RA +       G+      +  + LSGGQ+ RVA A+
Sbjct: 387 GDILAEPL----RIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIAR 442

Query: 188 ITFKKPHIILLDEPSNHLDLDAVEALIQGLVL---------FQGGILMVSHDEHLISGSV 238
               +P +++LDEP + LD       +Q  VL              L +SHD  +    V
Sbjct: 443 ALALEPKLLILDEPVSALD-----VSVQAQVLNLLKDLQEELGLTYLFISHDLAV----V 493

Query: 239 EEL----WVVSEGK-------ATPFHGTFHDYKKMLQS 265
             +     V+ +G+          F    H Y + L +
Sbjct: 494 RYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTRKLLA 531

Length = 539

>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed

 Score = 70.5 bits (174), Expect = 7e-14
 Identities = 26/57 (45%), Positives = 40/57 (70%)

Query: 174 TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHD 230
            LSGG++ RVA  ++  +KP ++LLDEP+NHLD ++V  L Q L  + G ++ V+HD
Sbjct: 163 KLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHD 219

Length = 556

>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 69.2 bits (170), Expect = 7e-14
 Identities = 53/185 (28%), Positives = 79/185 (42%), Gaps = 48/185 (25%)

Query: 54  PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGT 112
            +I   + SF YP       KN++F I+    +A++G NG GKSTI K++ G L+P SG 
Sbjct: 6   VMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGE 65

Query: 113 VFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPG------------------------ 148
           +               +DG+ +S   L   +R   G                        
Sbjct: 66  IK--------------IDGITISKENLKE-IRKKIGIIFQNPDNQFIGATVEDDIAFGLE 110

Query: 149 ---VPEQKLRAHLGSF----GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP 201
              VP +K++  +       G+   L  +P   LSGGQK RVA A +    P II+ DE 
Sbjct: 111 NKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQN-LSGGQKQRVAIASVLALNPEIIIFDES 169

Query: 202 SNHLD 206
           ++ LD
Sbjct: 170 TSMLD 174

Length = 271

>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 69.1 bits (169), Expect = 8e-14
 Identities = 61/223 (27%), Positives = 103/223 (46%), Gaps = 35/223 (15%)

Query: 55  IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
           +I   D  + Y G      N+NF    +SRIA++GPNG GKST+ +   G L+P+SG+V 
Sbjct: 3   LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVL 62

Query: 115 -----------RSAKVRIAVFSQHHVDGL-------DLSSNPLLYMMRCFPGVPEQKLRA 156
                      R  +  + +  Q+  D +       D++  P         G+ E+ + A
Sbjct: 63  IRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGP------INLGLDEETV-A 115

Query: 157 H-----LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVE 211
           H     L   G+       P + LSGG+K RVA A +   +P +++LDEP+  LD   V+
Sbjct: 116 HRVSSALHMLGLEELRDRVPHH-LSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVK 174

Query: 212 ALIQGL----VLFQGGILMVSHDEHLISGSVEELWVVSEGKAT 250
            LI  L      +   ++  +H   L+    + ++V+ +G+  
Sbjct: 175 ELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIV 217

Length = 277

>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI

 Score = 69.6 bits (170), Expect = 8e-14
 Identities = 53/182 (29%), Positives = 84/182 (46%), Gaps = 22/182 (12%)

Query: 67  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV----------FRS 116
           G  ++  +L+F I       ++GPNG GKSTI +++ G + P  G +           R 
Sbjct: 15  GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARL 74

Query: 117 AKVRIAVFSQHHVDGLDLS---SNPLLYMMRCFPGVPEQKLRAHLGS---FGVTGNLALQ 170
           A+V I V  Q   D LD        LL   R F G+  +++ A + S   F    + A  
Sbjct: 75  ARVAIGVVPQ--FDNLDPEFTVRENLLVFGRYF-GMSTREIEAVIPSLLEFARLESKADV 131

Query: 171 PMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL---IQGLVLFQGGILMV 227
            +  LSGG K R+  A+     P +++LDEP+  LD  A   +   ++ L+     IL+ 
Sbjct: 132 RVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLT 191

Query: 228 SH 229
           +H
Sbjct: 192 TH 193

This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303

>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system

 Score = 67.9 bits (166), Expect = 1e-13
 Identities = 52/168 (30%), Positives = 78/168 (46%), Gaps = 28/168 (16%)

Query: 84  RIAMVGPNGIGKSTILKLIAGELQPSSGTVF----------RSAKVRIAVFSQH----HV 129
             A+VGP+G GKST+L LIAG   P SG V            + +    +F ++    H+
Sbjct: 26  ITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHL 85

Query: 130 D---GLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFA 186
                + L  +P L +         Q +   L   G+ G     P   LSGG++ RVA A
Sbjct: 86  TVEQNVGLGLSPGLKLT----AEDRQAIEVALARVGLAGLEKRLPG-ELSGGERQRVALA 140

Query: 187 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVL-----FQGGILMVSH 229
           ++  +   ++LLDEP   LD  A+ A +  LVL      +  +LMV+H
Sbjct: 141 RVLVRDKPVLLLDEPFAALD-PALRAEMLDLVLDLHAETKMTVLMVTH 187

Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component

 Score = 67.6 bits (166), Expect = 1e-13
 Identities = 51/237 (21%), Positives = 90/237 (37%), Gaps = 75/237 (31%)

Query: 56  ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115
           +   + +  Y     L   ++  +       ++GPNG GK+T+++++A    PSSGT+  
Sbjct: 1   LQLENLTKRYGKKRAL-DGVSLTLG-PGMYGLLGPNGAGKTTLMRILATLTPPSSGTI-- 56

Query: 116 SAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLG----SFGVTGNL---- 167
                        +DG D+   P             QKLR  +G     FGV  N     
Sbjct: 57  ------------RIDGQDVLKQP-------------QKLRRRIGYLPQEFGVYPNFTVRE 91

Query: 168 --------------------------------ALQPMYTLSGGQKSRVAFAKITFKKPHI 195
                                           A + + +LSGG + RV  A+     P I
Sbjct: 92  FLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSI 151

Query: 196 ILLDEPSNHLDLD---AVEALIQGLVLFQGGILMVS-HDEHLISGSVEELWVVSEGK 248
           +++DEP+  LD +       L+  L   +  I+++S H    +     ++ V+++GK
Sbjct: 152 LIVDEPTAGLDPEERIRFRNLLSELG--EDRIVILSTHIVEDVESLCNQVAVLNKGK 206

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional

 Score = 68.0 bits (166), Expect = 1e-13
 Identities = 62/226 (27%), Positives = 102/226 (45%), Gaps = 32/226 (14%)

Query: 55  IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
           +I F   S  Y GG    + + F +       + G +G GKST+LKLI G  +PS+G ++
Sbjct: 1   MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIW 60

Query: 115 ---------RSAKVRI------AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLR---- 155
                    ++ +V         +F  HH+  +D +    + +     G     +R    
Sbjct: 61  FSGHDITRLKNREVPFLRRQIGMIFQDHHLL-MDRTVYDNVAIPLIIAGASGDDIRRRVS 119

Query: 156 AHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ 215
           A L   G+       P+  LSGG++ RV  A+    KP ++L DEP+ +LD    +AL +
Sbjct: 120 AALDKVGLLDKAKNFPI-QLSGGEQQRVGIARAVVNKPAVLLADEPTGNLD----DALSE 174

Query: 216 GLV-LFQG------GILMVSHDEHLISGSVEELWVVSEGKATPFHG 254
           G++ LF+        +LM +HD  LIS     +  +S+G      G
Sbjct: 175 GILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHGGVG 220

Length = 222

>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 69.9 bits (172), Expect = 1e-13
 Identities = 59/227 (25%), Positives = 98/227 (43%), Gaps = 36/227 (15%)

Query: 31  VDEVVN-DPDYKFEFPTPDDRPGPPIISFSDASFGYPGGP-ILFKNLNFGIDLDSRIAMV 88
           ++E+    P+  F   T         ++ ++ SF YP  P  + K L+  I    ++A++
Sbjct: 314 INEITEQKPEVTFP-TTSTAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALL 372

Query: 89  GPNGIGKSTILKLIAGELQPSSGTV---------FRSAKVR--IAVFSQH-HVDGLDLSS 136
           G  G GKST+L+L+     P  G +         +  A +R  I+V SQ  H+    L  
Sbjct: 373 GRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRD 432

Query: 137 NPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA--LQPMYT--------LSGGQKSRVAFA 186
           N LL      P   ++ L   L   G+   L    + +          LSGG++ R+  A
Sbjct: 433 NLLLAA----PNASDEALIEVLQQVGL-EKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIA 487

Query: 187 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGG----ILMVSH 229
           +       ++LLDEP+  LD +  E  I  L L +      +LM++H
Sbjct: 488 RALLHDAPLLLLDEPTEGLDAET-ERQILEL-LAEHAQNKTVLMITH 532

Length = 574

>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 68.8 bits (169), Expect = 1e-13
 Identities = 55/224 (24%), Positives = 103/224 (45%), Gaps = 35/224 (15%)

Query: 55  IISFSDASFGYP----GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSS 110
           +I   + S  +     G      +++  I       ++G +G GKST+L+LI    +P+S
Sbjct: 1   MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTS 60

Query: 111 GTVF--------------RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP----GVPE- 151
           G+VF              R  + +I +  QH     +L S+  ++    FP    GVP+ 
Sbjct: 61  GSVFVDGQDLTALSEAELRQLRQKIGMIFQH----FNLLSSRTVFENVAFPLELAGVPKA 116

Query: 152 --QKLRAHLGSF-GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLD 208
             ++  A L    G++      P   LSGGQK RVA A+     P I+L DE ++ LD +
Sbjct: 117 EIKQRVAELLELVGLSDKADRYPA-QLSGGQKQRVAIARALANNPKILLCDEATSALDPE 175

Query: 209 AVEALIQGLVLFQG----GILMVSHDEHLISGSVEELWVVSEGK 248
             +++++ L          I++++H+  ++    + + V+ +G+
Sbjct: 176 TTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGR 219

Length = 339

>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 68.2 bits (167), Expect = 2e-13
 Identities = 56/215 (26%), Positives = 94/215 (43%), Gaps = 59/215 (27%)

Query: 78  GIDLDSR----IAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD 133
           G+ LD R    +A++GPNG GKST+LK ++GEL P SG V               ++G+ 
Sbjct: 19  GVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEV--------------TLNGVP 64

Query: 134 LSSNPLLYMMR-----------CFP----------GVP----------EQKLRAHLGSFG 162
           L+S P   + R            FP           +P          E+     L +  
Sbjct: 65  LNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATD 124

Query: 163 VTGNLALQPMYTLSGGQKSRVAFAKITFK------KPHIILLDEPSNHLDLDAVEALIQG 216
           ++G LA +   TLSGG++ RV  A++  +          + LDEP++ LD+      ++ 
Sbjct: 125 LSG-LAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRL 183

Query: 217 LVLF---QGGILMVSHDEHLISGSVEELWVVSEGK 248
                   G +L V HD +L +   + + ++ +G+
Sbjct: 184 ARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGR 218

Length = 259

>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 67.6 bits (165), Expect = 2e-13
 Identities = 51/204 (25%), Positives = 87/204 (42%), Gaps = 26/204 (12%)

Query: 67  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV-FRSAKVRIAVFS 125
           G   +  N++  +     IA+ GP+G GKST+LK++A  + P+SGT+ F    V      
Sbjct: 14  GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPE 73

Query: 126 QHHVDGLDLSSNPLLYMMRCFPGVPEQKL----RAH------------LGSFGVTGNLAL 169
            +       +  P L     F    E  L    +              L  F +  ++  
Sbjct: 74  AYRQQVSYCAQTPAL-----FGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILT 128

Query: 170 QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLD---AVEALIQGLVLFQG-GIL 225
           + +  LSGG+K R+A  +     P I+LLDE ++ LD      +E +I   V  Q   +L
Sbjct: 129 KNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVL 188

Query: 226 MVSHDEHLISGSVEELWVVSEGKA 249
            ++HD+       +++  +  G A
Sbjct: 189 WITHDKDQAIRHADKVITLQPGHA 212

Length = 223

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 69.2 bits (170), Expect = 2e-13
 Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 30/137 (21%)

Query: 85  IAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMR 144
           I ++GPNGIGK+T +KL+AG ++P  G+      ++++   Q              Y+  
Sbjct: 370 IGILGPNGIGKTTFVKLLAGVIKPDEGSE---EDLKVSYKPQ--------------YISP 412

Query: 145 CFPGVPEQKLRAHLGS-FG-------VTGNLALQPMY-----TLSGGQKSRVAFAKITFK 191
            + G  E  LR+ + S FG       +   L L+ +       LSGG+  RVA A    +
Sbjct: 413 DYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSR 472

Query: 192 KPHIILLDEPSNHLDLD 208
           +  + LLDEPS +LD++
Sbjct: 473 EADLYLLDEPSAYLDVE 489

Length = 591

>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein

 Score = 69.3 bits (170), Expect = 2e-13
 Identities = 62/249 (24%), Positives = 98/249 (39%), Gaps = 74/249 (29%)

Query: 18  VQSRIKALERMGHVDEVVND---PDYKFEFPTPDDRPGPPIISFSDASFGYPGGPIL--F 72
           +Q    A ER+  + +   D   P +    P P        I F   +F YP  P     
Sbjct: 301 LQRAAGAAERLIELLQAEPDIKAPAHPKTLPVP----LRGEIEFEQVNFAYPARPDQPAL 356

Query: 73  KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV---------FRSAKVR--I 121
             LN  +     +A+VGP+G GKST+ +L+     P SG +            A++R  +
Sbjct: 357 DGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARM 416

Query: 122 AVFSQHHVDGLDLSSNPLLYMMRCF-------PGVPEQKLRA------------------ 156
           A+  Q          +P+L+            P   ++++ A                  
Sbjct: 417 ALVPQ----------DPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGY 466

Query: 157 --HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLD------ 208
             +LG  GV          TLSGGQ+ R+A A+   K   I+LLDE ++ LD +      
Sbjct: 467 DTYLGERGV----------TLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQ 516

Query: 209 -AVEALIQG 216
            A+E L++G
Sbjct: 517 QALETLMKG 525

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576

>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter

 Score = 69.4 bits (170), Expect = 2e-13
 Identities = 47/214 (21%), Positives = 98/214 (45%), Gaps = 23/214 (10%)

Query: 56  ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115
           I  +D S+ Y  G  +  +++  I ++S+  +VG +G GKST+ KL+ G  Q  SG +  
Sbjct: 474 IVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILL 533

Query: 116 SAKVRIAVFSQHHVDGL--DLSSNPLLY--------MMRCFPGVPEQKLRAHLGSFGVTG 165
           +    +    +H +      L   P ++        ++     V + ++ A      +  
Sbjct: 534 NGF-SLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKD 592

Query: 166 NLALQPM----------YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ 215
           ++   P+           ++SGGQK R+A A+       +++LDE +++LD    + ++ 
Sbjct: 593 DIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVN 652

Query: 216 GLV-LFQGGILMVSHDEHLISGSVEELWVVSEGK 248
            L+ L    I+ V+H    ++   +++ V+  GK
Sbjct: 653 NLLNLQDKTIIFVAHRLS-VAKQSDKIIVLDHGK 685

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708

>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor

 Score = 67.4 bits (165), Expect = 2e-13
 Identities = 40/135 (29%), Positives = 60/135 (44%), Gaps = 28/135 (20%)

Query: 85  IAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMR 144
           I ++GPNGIGK+T +K++AG L+P  G +               ++   +S  P  Y+  
Sbjct: 28  IGILGPNGIGKTTFIKMLAGVLKPDEGDI--------------EIELDTVSYKP-QYIKA 72

Query: 145 CFPGVPEQKLRAHLGSFG--------VTGNLALQPMY-----TLSGGQKSRVAFAKITFK 191
            + G     L +    F         +   L ++ +       LSGG+  RVA A    K
Sbjct: 73  DYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSK 132

Query: 192 KPHIILLDEPSNHLD 206
              I LLDEPS +LD
Sbjct: 133 DADIYLLDEPSAYLD 147

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246

>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 67.9 bits (166), Expect = 3e-13
 Identities = 58/187 (31%), Positives = 78/187 (41%), Gaps = 51/187 (27%)

Query: 55  IISFSDASFGYPGGPI-LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
           I+ F   SF YP        +++F I   S  A++G NG GKSTI KLI G L P     
Sbjct: 5   IVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDD--- 61

Query: 114 FRSAKVRIAVFSQHHVDGLDLSS---------------NPLLYMMRCFPG---------- 148
             +   +I       VDG+ L++               NP       F G          
Sbjct: 62  --NPNSKIT------VDGITLTAKTVWDIREKVGIVFQNP----DNQFVGATVGDDVAFG 109

Query: 149 -----VPEQKL----RAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD 199
                VP  ++    R  L   G+   +  +P   LSGGQK RVA A I   +P II+LD
Sbjct: 110 LENRAVPRPEMIKIVRDVLADVGMLDYIDSEPAN-LSGGQKQRVAIAGILAVEPKIIILD 168

Query: 200 EPSNHLD 206
           E ++ LD
Sbjct: 169 ESTSMLD 175

Length = 282

>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter

 Score = 66.9 bits (164), Expect = 3e-13
 Identities = 53/210 (25%), Positives = 83/210 (39%), Gaps = 50/210 (23%)

Query: 56  ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115
           I F + +  Y GG     NLN  I     + ++GP+G GK+T +K+I   ++P+SG +F 
Sbjct: 1   IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIF- 59

Query: 116 SAKVRIAVFSQHHVDGLDLSSNPLLYMMR----------CFP---------------GVP 150
                        +DG D+     + + R           FP                 P
Sbjct: 60  -------------IDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWP 106

Query: 151 EQKLRA------HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNH 204
           ++K+R        L            P + LSGGQ+ RV  A+     P ++L+DEP   
Sbjct: 107 KEKIRERADELLALVGLDPAEFADRYP-HELSGGQQQRVGVARALAADPPLLLMDEPFGA 165

Query: 205 LDLDAVEALIQGLVLFQ----GGILMVSHD 230
           LD    + L +     Q      I+ V+HD
Sbjct: 166 LDPITRDQLQEEFKRLQQELGKTIVFVTHD 195

OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242

>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter

 Score = 66.7 bits (164), Expect = 4e-13
 Identities = 44/158 (27%), Positives = 67/158 (42%), Gaps = 25/158 (15%)

Query: 64  GYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV---------- 113
           GY    ILF  ++  +     +A++G NG GK+T+LK I G L P SG++          
Sbjct: 9   GYGKSQILF-GVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGL 67

Query: 114 --FRSAKVRIA-------VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVT 164
                A+  I        +F +  V+      N LL          + +L      F   
Sbjct: 68  PPHERARAGIGYVPEGRRIFPELTVEE-----NLLLGAYARRRAKRKARLERVYELFPRL 122

Query: 165 GNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS 202
                Q   TLSGG++  +A A+    +P ++LLDEPS
Sbjct: 123 KERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPS 160

LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222

>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional

 Score = 66.8 bits (163), Expect = 4e-13
 Identities = 56/187 (29%), Positives = 90/187 (48%), Gaps = 26/187 (13%)

Query: 71  LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV-FR-------SAKVRIA 122
           +  N++F I     +A+VG +G GKST+L L+ G   P+SG V F        S+  +  
Sbjct: 24  VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83

Query: 123 VFSQ--------HHV----DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQ 170
           + +Q        HH+      L+  + PLL + +  P     +    L + G+      +
Sbjct: 84  LRNQKLGFIYQFHHLLPDFTALENVAMPLL-IGKKKPAEINSRALEMLAAVGLEHRANHR 142

Query: 171 PMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL---DAVEALIQGLVLFQG-GILM 226
           P   LSGG++ RVA A+     P ++L DEP+ +LD    D++  L+  L   QG   L+
Sbjct: 143 PS-ELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLV 201

Query: 227 VSHDEHL 233
           V+HD  L
Sbjct: 202 VTHDLQL 208

Length = 233

>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional

 Score = 66.3 bits (162), Expect = 5e-13
 Identities = 51/212 (24%), Positives = 88/212 (41%), Gaps = 45/212 (21%)

Query: 54  PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
           P++   +  +      IL  N++F +       + GP+G GKST+LK++A  + P+SGT+
Sbjct: 6   PLLQLQNVGYLAGDAKIL-NNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTL 64

Query: 114 FRSAKVRIAVFSQHHVDGLDLSS-NPLLYMMR---C----------------FP------ 147
                           +G D+S+  P +Y  +   C                FP      
Sbjct: 65  L--------------FEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQ 110

Query: 148 GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 207
                     L  F +   +  + +  LSGG+K R++  +     P ++LLDE ++ LD 
Sbjct: 111 QPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDE 170

Query: 208 D---AVEALIQGLVLFQG-GILMVSHDEHLIS 235
                V  +I   V  Q   +L V+HD+  I+
Sbjct: 171 SNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN 202

Length = 225

>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR)

 Score = 68.4 bits (167), Expect = 5e-13
 Identities = 57/205 (27%), Positives = 103/205 (50%), Gaps = 14/205 (6%)

Query: 61  ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR 120
           ++F     P+L KN++F ++    +A+ G  G GKS++L +I GEL+PS G +  S ++ 
Sbjct: 432 SNFSLYVTPVL-KNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRIS 490

Query: 121 IAVFSQHHVDGLDLSSNPLLYM----MRCFPGVPEQKLRAHLGSFGVTGNLAL-QPMYTL 175
            +  +   + G  +  N +  +     R    +   +L   +  F       L +   TL
Sbjct: 491 FSPQTSWIMPG-TIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITL 549

Query: 176 SGGQKSRVAFAKITFKKPHIILLDEPSNHLDL----DAVEALIQGLVLFQGGILMVSHDE 231
           SGGQ++R++ A+  +K   + LLD P  HLD+    +  E+ +  L+  +  IL+ S  E
Sbjct: 550 SGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLE 609

Query: 232 HLISGSVEELWVVSEGKATPFHGTF 256
           HL     +++ ++ EG    F+GTF
Sbjct: 610 HL--KKADKILLLHEGVCY-FYGTF 631

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490

>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D

 Score = 65.6 bits (160), Expect = 8e-13
 Identities = 58/174 (33%), Positives = 86/174 (49%), Gaps = 17/174 (9%)

Query: 73  KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-------RIAVFS 125
           K +N  I     I+++G +G GKST+L LI+G  QP+SG V    K        R+ VF 
Sbjct: 2   KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQ 61

Query: 126 QHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRA----HLGSFGVTGNLALQPMYTLSGGQK 180
            + +   L +  N  L + R  P + + + RA    H+   G+T   A +    LSGG K
Sbjct: 62  NYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLT-EAADKRPGQLSGGMK 120

Query: 181 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHD 230
            RVA A+    +P ++LLDEP   LD      L + L+      +  +LMV+HD
Sbjct: 121 QRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHD 174

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230

>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit

 Score = 64.9 bits (158), Expect = 2e-12
 Identities = 52/165 (31%), Positives = 75/165 (45%), Gaps = 20/165 (12%)

Query: 85  IAMVGPNGIGKSTILKLIAGELQPSSGTV------FRSAKVRIAVFSQHH---------V 129
           + ++GPNG GK+T+L+ I G + P+ GTV             I    Q H         V
Sbjct: 9   LGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISV 68

Query: 130 DGLDLSSNPLLYMMRCFPGVPE-QKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKI 188
               +S           P V +   +R  L   G+T  LA +P+  LSGGQ+ RV  A+ 
Sbjct: 69  AHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLT-ELADRPVGELSGGQRQRVLVARA 127

Query: 189 TFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQG---GILMVSHD 230
              +P ++LLDEP   LD+   E L +  +   G    ILM +HD
Sbjct: 128 LATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHD 172

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223

>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters

 Score = 64.8 bits (159), Expect = 2e-12
 Identities = 52/211 (24%), Positives = 84/211 (39%), Gaps = 41/211 (19%)

Query: 55  IISFSDASFGYPGGPILFKNLNFGIDLD----SRIAMVGPNGIGKSTILKLIAGELQPSS 110
           ++   + S  +P G    K L+  +         + +VG +G GKST+ + I G L+P+S
Sbjct: 1   LLEVKNLSVSFPTGGGSVKALD-DVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTS 59

Query: 111 GTVFRSAKV--------------RIAVFSQHHVDGLDLSSNPL----------LYMMRCF 146
           G++    K                I +  Q        S NP           L +    
Sbjct: 60  GSIIFDGKDLLKLSRRLRKIRRKEIQMVFQD----PMSSLNPRMTIGEQIAEPLRIHGKL 115

Query: 147 PGVPEQKLRAHLGSFGVTGNLALQPMY--TLSGGQKSRVAFAKITFKKPHIILLDEPSNH 204
                +K    L   GV     +   Y   LSGGQ+ RVA A+     P +++ DEP++ 
Sbjct: 116 SKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSA 175

Query: 205 LDLDAVEALIQGLVL-----FQGGILMVSHD 230
           LD+  V+A I  L+          +L ++HD
Sbjct: 176 LDVS-VQAQILDLLKKLQEELGLTLLFITHD 205

The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228

>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein

 Score = 64.7 bits (158), Expect = 2e-12
 Identities = 56/191 (29%), Positives = 89/191 (46%), Gaps = 30/191 (15%)

Query: 70  ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF------------RSA 117
            + K ++  I     +A+VG +G GKST+L L+ G   P+SG V               A
Sbjct: 19  RVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERA 78

Query: 118 KVRIA----VFSQHHV----DGLDLSSNPLLYMMRCFPGVPEQKLRAH--LGSFGVTGNL 167
           K+R      ++  HH+      L+  + PLL   +    V E K RA+  L   G+   +
Sbjct: 79  KLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKK---SVKEAKERAYEMLEKVGLEHRI 135

Query: 168 ALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEA---LIQGLVLFQG-G 223
             +P   LSGG++ RVA A+    +P ++L DEP+ +LD +  +    L+  L       
Sbjct: 136 NHRPS-ELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTS 194

Query: 224 ILMVSHDEHLI 234
            L+V+HD  L 
Sbjct: 195 FLVVTHDLELA 205

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221

>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional

 Score = 65.0 bits (159), Expect = 2e-12
 Identities = 51/164 (31%), Positives = 80/164 (48%), Gaps = 19/164 (11%)

Query: 62  SFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR------ 115
           + GY    IL  +L+  +      A++GPNG GKST+LK  A  L P SGTVF       
Sbjct: 9   TVGYGTKRIL-NDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPIS 67

Query: 116 --SAKV---RIAVFSQHHVDGLDLSSNPLLYMMRC----FPGVPEQKLRAHLG-SFGVTG 165
             S++    R+A+  QHH+    ++   L+   R       G    +  A +  +   T 
Sbjct: 68  MLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTR 127

Query: 166 --NLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 207
             +LA + +  LSGGQ+ R   A +  +   ++LLDEP+ +LD+
Sbjct: 128 INHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDI 171

Length = 255

>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional

 Score = 65.1 bits (159), Expect = 2e-12
 Identities = 43/157 (27%), Positives = 72/157 (45%), Gaps = 22/157 (14%)

Query: 65  YPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRI--- 121
           Y G P L +++N  ++    + ++GP+G GK+T+L LIAG +    G++       +   
Sbjct: 11  YGGKPAL-EDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSI-TLDGKPVEGP 68

Query: 122 ----AVFSQHHVDGL----DLSSNPLLYMMRCFPGVP----EQKLRAHLGSFGVTGNLAL 169
                V  Q+  +GL    ++  N    +     GV      +     L   G+ G    
Sbjct: 69  GAERGVVFQN--EGLLPWRNVQDNVAFGLQ--LAGVEKMQRLEIAHQMLKKVGLEGAEK- 123

Query: 170 QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 206
           + ++ LSGGQ+ RV  A+     P ++LLDEP   LD
Sbjct: 124 RYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALD 160

Length = 255

>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional

 Score = 64.6 bits (158), Expect = 2e-12
 Identities = 68/201 (33%), Positives = 95/201 (47%), Gaps = 41/201 (20%)

Query: 56  ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF- 114
           +  +D ++ Y   P+ F   +  ++   R+A++GP+G GKST+L LIAG L P+SG++  
Sbjct: 2   LKLTDITWLYHHLPMRF---DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTL 58

Query: 115 ------RSAKVRIAV---------FSQHHVD---GLDLSSNPLLYMMRCFPGVPEQKLRA 156
                  +   R  V         FS   V    GL L  NP L +         +KL A
Sbjct: 59  NGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGL--NPGLKL----NAAQREKLHA 112

Query: 157 HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQG 216
                G+   LA  P   LSGGQ+ RVA A+   ++  I+LLDEP + LD     AL Q 
Sbjct: 113 IARQMGIEDLLARLP-GQLSGGQRQRVALARCLVREQPILLLDEPFSALD----PALRQE 167

Query: 217 -LVLF-------QGGILMVSH 229
            L L        Q  +LMVSH
Sbjct: 168 MLTLVSQVCQERQLTLLMVSH 188

Length = 232

>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional

 Score = 65.2 bits (159), Expect = 2e-12
 Identities = 63/219 (28%), Positives = 97/219 (44%), Gaps = 26/219 (11%)

Query: 51  PGP-PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS 109
           P     I F +    Y G  ++   L+F +       ++GPNG GK+T L+++ G   P 
Sbjct: 2   PMSVAPIDFRNVEKRY-GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD 60

Query: 110 SGTVF----------RSAKVRIAVFSQHHVDGLD----LSSNPLLYMMRCFPGVPEQKLR 155
           +G++           R A+ R+ V  Q   D LD    +  N LL   R F G+     R
Sbjct: 61  AGSISLCGEPVPSRARHARQRVGVVPQ--FDNLDPDFTVREN-LLVFGRYF-GLSAAAAR 116

Query: 156 AH---LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEA 212
           A    L  F    N A   +  LSGG K R+  A+     P +++LDEP+  LD  A   
Sbjct: 117 ALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHL 176

Query: 213 LIQGL--VLFQGG-ILMVSHDEHLISGSVEELWVVSEGK 248
           + + L  +L +G  IL+ +H         + L V+ EG+
Sbjct: 177 MWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGR 215

Length = 306

>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 65.2 bits (159), Expect = 2e-12
 Identities = 60/220 (27%), Positives = 105/220 (47%), Gaps = 27/220 (12%)

Query: 56  ISFSDASFGY-PGGPILFK---NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 111
           I F +  + Y PG P+  K   N++F ++  S +A+VG  G GKST+++     L+PSSG
Sbjct: 3   IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG 62

Query: 112 TVFRSA-------------KVRIAVFSQHHVDGLDLSSNPLLYMMRCFP---GVPEQKLR 155
           T+  +              K+R  V          L  N +L  +   P   G  E + +
Sbjct: 63  TITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAK 122

Query: 156 AH----LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVE 211
                 L   G++ +L  +  + LSGGQ  RVA A +   +P I+ LDEP+  LD +  +
Sbjct: 123 EKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRK 182

Query: 212 ALIQGLVLFQGG---ILMVSHDEHLISGSVEELWVVSEGK 248
            ++Q    +Q     +++V+H+   ++   +++ V+  GK
Sbjct: 183 EMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGK 222

Length = 287

>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family

 Score = 65.8 bits (161), Expect = 2e-12
 Identities = 63/238 (26%), Positives = 109/238 (45%), Gaps = 41/238 (17%)

Query: 43  EFPTPDDR---PGPP-IISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKS 96
            +P+ D     P P   +S  + +   PGG  P L + ++F +     +A++GP+G GKS
Sbjct: 300 NYPSRDPAMPLPEPEGHLSVENVTIVPPGGKKPTL-RGISFSLQAGEALAIIGPSGSGKS 358

Query: 97  TILKLIAGELQPSSGTVFRSAKVRI--AVFSQHHVDGLDLSSNPLLYMMRCFPG------ 148
           T+ +LI G   P+SG       VR+  A   Q   +        L   +  FPG      
Sbjct: 359 TLARLIVGIWPPTSG------SVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENI 412

Query: 149 ------VPEQKLRAHLGSFGVTGNLALQPM-Y---------TLSGGQKSRVAFAKITFKK 192
                    +K+       GV   +   P  Y         TLSGGQ+ R+A A+  +  
Sbjct: 413 ARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGD 472

Query: 193 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGI-LMVSHDEHLISGSVEELWVVSEG 247
           P +++LDEP+++LD +  +AL   +     +G   ++++H   L+ G V+++ V+ +G
Sbjct: 473 PKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLL-GCVDKILVLQDG 529

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544

>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 65.0 bits (159), Expect = 3e-12
 Identities = 52/212 (24%), Positives = 88/212 (41%), Gaps = 51/212 (24%)

Query: 55  IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
           +I F + S  Y G      ++N  I+    + ++GP+G GK+T LK+I   ++P+SG + 
Sbjct: 1   MIEFENVSKRY-GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEIL 59

Query: 115 RSAKVRIAVFSQHHVDGLDLSSNPLLYMMR----------CFP---------------GV 149
                         +DG D+S    + + R           FP               G 
Sbjct: 60  --------------IDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGW 105

Query: 150 PEQKLRAH----LGSFGVTGNLALQ--PMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN 203
            +++++      L   G+  +      P + LSGGQ+ RV  A+     P I+L+DEP  
Sbjct: 106 DKERIKKRADELLDLVGLDPSEYADRYP-HELSGGQQQRVGVARALAADPPILLMDEPFG 164

Query: 204 HLDLDAVEALIQGLVLFQGG----ILMVSHDE 231
            LD    + L + +   Q      I+ V+HD 
Sbjct: 165 ALDPITRKQLQEEIKELQKELGKTIVFVTHDI 196

Length = 309

>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 63.7 bits (155), Expect = 3e-12
 Identities = 53/196 (27%), Positives = 88/196 (44%), Gaps = 23/196 (11%)

Query: 55  IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS---SG 111
           ++   + S   PG  +L  N+NF I     + ++GP+G GKST+L  + G L      +G
Sbjct: 2   MLCLKNVSLRLPGSCLL-ANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTG 60

Query: 112 TVFRSAKVRIAV-FSQHHV----------DGLDLSSNPLLYMMRCFPGVPEQKL-RAHLG 159
            ++ + +    +  +Q  +            L +  N L  +     G   +    A L 
Sbjct: 61  ELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALE 120

Query: 160 SFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL 219
             G+ G    Q   TLSGGQ++RVA  +    +P  +LLDEP + LD+ A+    +  V 
Sbjct: 121 RSGLDG-AFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDV-ALRDQFRQWVF 178

Query: 220 FQ---GGI--LMVSHD 230
            +    GI  + V+HD
Sbjct: 179 SEVRAAGIPTVQVTHD 194

Length = 213

>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 64.1 bits (156), Expect = 4e-12
 Identities = 51/181 (28%), Positives = 87/181 (48%), Gaps = 26/181 (14%)

Query: 56  ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115
           I F + S+   G  IL K+++   +  +   +VGP+G GKST++KLI   + P+ G++  
Sbjct: 4   IEFKEVSYSSFGKEIL-KDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILI 62

Query: 116 SA-----------KVRIA-VFSQHHV-DGL---DLSSNPLLYMMRCFPGVPEQKLRAHLG 159
                        + +I  VF Q H+ +G    ++   P+L       G     +  +L 
Sbjct: 63  DGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPML------KGEKNVDVEYYLS 116

Query: 160 SFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD---LDAVEALIQG 216
             G+    A + +  LSGG+  RV+ A+     P ++LLDEP++ LD    + +E LI  
Sbjct: 117 IVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVK 176

Query: 217 L 217
           L
Sbjct: 177 L 177

Length = 241

>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family

 Score = 65.5 bits (160), Expect = 4e-12
 Identities = 65/234 (27%), Positives = 94/234 (40%), Gaps = 60/234 (25%)

Query: 19  QSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPI----ISFSDASFGY-PGGPILFK 73
           Q+ I ALER+G   +++N P      P        P     I+F +  F Y P  P +  
Sbjct: 423 QTGI-ALERLG---DILNSPTE----PRSAGLAALPELRGAITFENIRFRYAPDSPEVLS 474

Query: 74  NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD 133
           NLN  I     I +VGP+G GKST+ KL+     P  G V               VDG+D
Sbjct: 475 NLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVL--------------VDGVD 520

Query: 134 LSSNPLLYMMR----------------------CFPGVPEQKLRAHLGSFGVTGNLALQP 171
           L+     ++ R                      C PG P + +       G    ++  P
Sbjct: 521 LAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELP 580

Query: 172 M----------YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ 215
                        LSGGQ+ R+A A+     P I++ DE ++ LD ++ EALI 
Sbjct: 581 QGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYES-EALIM 633

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694

>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK

 Score = 63.4 bits (155), Expect = 4e-12
 Identities = 50/155 (32%), Positives = 78/155 (50%), Gaps = 26/155 (16%)

Query: 73  KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF--------RSAKVR-IA- 122
            +LN  I     + ++GP+G GK+T L++IAG  +P+SG ++           K R IA 
Sbjct: 17  DDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAM 76

Query: 123 VFSQH----HVDGLDLSSNPLLYMMRCFPGVP-EQKLR--AHLGSFGVTGNLALQPMYTL 175
           VF  +    H+   D  +  L   +R  P    ++++R  A L    +   L  +P   L
Sbjct: 77  VFQNYALYPHMTVYDNIAFGL--KLRKVPKDEIDERVREVAEL--LQIEHLLDRKPK-QL 131

Query: 176 SGGQKSRVAFAKITFKKPHIILLDEP-SNHLDLDA 209
           SGGQ+ RVA  +   ++P + L+DEP SN   LDA
Sbjct: 132 SGGQRQRVALGRAIVREPKVFLMDEPLSN---LDA 163

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213

>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein

 Score = 65.4 bits (160), Expect = 4e-12
 Identities = 53/184 (28%), Positives = 82/184 (44%), Gaps = 48/184 (26%)

Query: 56  ISFSDASFGY-PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
           I     +F Y P GP++  +++  I+    +A+VGP+G GKST+L+L+ G   P SG+VF
Sbjct: 452 IEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVF 511

Query: 115 RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSF------------- 161
                    +    + GLD+ +      +R   GV  Q  R   GS              
Sbjct: 512 ---------YDGQDLAGLDVQA------VRRQLGVVLQNGRLMSGSIFENIAGGAPLTLD 556

Query: 162 ---------GVTGNLALQPM----------YTLSGGQKSRVAFAKITFKKPHIILLDEPS 202
                    G+  ++   PM           TLSGGQ+ R+  A+   +KP I+L DE +
Sbjct: 557 EAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEAT 616

Query: 203 NHLD 206
           + LD
Sbjct: 617 SALD 620

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686

>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 64.0 bits (156), Expect = 4e-12
 Identities = 51/192 (26%), Positives = 92/192 (47%), Gaps = 28/192 (14%)

Query: 62  SFGYPGGP-ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV- 119
           S  Y G P    ++++  I     + ++GP+G GK+T+L LIAG + PS G++  + +  
Sbjct: 10  SLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRI 69

Query: 120 ------RIAVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL--- 169
                 R  VF    +   L++  N + + ++   G+ + + R           LAL   
Sbjct: 70  EGPGAERGVVFQNEALLPWLNVIDN-VAFGLQ-LRGIEKAQRREI-----AHQMLALVGL 122

Query: 170 -----QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV-LFQ-- 221
                + ++ LSGG + RV  A+    +P ++LLDEP   LD    E + + L+ L+Q  
Sbjct: 123 EGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQET 182

Query: 222 -GGILMVSHDEH 232
              +L+++HD  
Sbjct: 183 GKQVLLITHDIE 194

Length = 259

>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C

 Score = 63.2 bits (154), Expect = 5e-12
 Identities = 49/194 (25%), Positives = 83/194 (42%), Gaps = 38/194 (19%)

Query: 56  ISFSDASFGY-PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
           I   + S  Y P  P + KN++F +    +I +VG  G GKST++  +   L+   G + 
Sbjct: 7   IEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKI- 65

Query: 115 RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYT 174
                         +DG+D+S+ PL  +      +P+      L S  +  NL     Y+
Sbjct: 66  -------------EIDGIDISTIPLEDLRSSLTIIPQDPT---LFSGTIRSNLDPFDEYS 109

Query: 175 ----------------LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV 218
                           LS GQ+  +  A+   K+P +++LDE +  +D    +ALIQ  +
Sbjct: 110 DEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYAT-DALIQKTI 168

Query: 219 --LFQGG-ILMVSH 229
              F    IL ++H
Sbjct: 169 REEFTNSTILTIAH 182

Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207

>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter

 Score = 63.5 bits (155), Expect = 5e-12
 Identities = 57/201 (28%), Positives = 94/201 (46%), Gaps = 29/201 (14%)

Query: 73  KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA---------KVRIAV 123
           KN++  ++      ++GP G GKS +L+ IAG ++P SG +  +          K  I+ 
Sbjct: 16  KNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISY 75

Query: 124 FSQHHV--DGLDLSSNPLLYMMRCFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSG 177
             Q++     + +  N + Y ++    V     E+K+       G+   L  +P  TLSG
Sbjct: 76  VPQNYALFPHMTVYKN-IAYGLK-KRKVDKKEIERKVLEIAEMLGIDHLLNRKPE-TLSG 132

Query: 178 GQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV----LFQGGILMVSHDEHL 233
           G++ RVA A+     P I+LLDEP + LD+   E L + L      F   +L V+HD   
Sbjct: 133 GEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHD--- 189

Query: 234 ISGSVEELWVVSEGKATPFHG 254
                EE W +++  A   +G
Sbjct: 190 ----FEEAWALADKVAIMLNG 206

Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed

 Score = 64.6 bits (158), Expect = 5e-12
 Identities = 49/187 (26%), Positives = 76/187 (40%), Gaps = 53/187 (28%)

Query: 52  GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 111
             P++     S  + G  ++  NL+  I+    + ++GP+G GK+T+L+LIAG   P SG
Sbjct: 11  LSPLVELRGISKSFDGKEVI-SNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSG 69

Query: 112 TVFRSAKVRIAVFSQHHVDGLDLSSNP--------------LLYMMRCFPGV-------- 149
            +               +DG D++  P              L   M  F  V        
Sbjct: 70  RIM--------------LDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQK 115

Query: 150 -PEQKLRA---------HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD 199
            P  ++            L  F      A +  + LSGGQ+ RVA A+    KP ++LLD
Sbjct: 116 TPAAEITPRVMEALRMVQLEEF------AQRKPHQLSGGQQQRVAIARAVVNKPKVLLLD 169

Query: 200 EPSNHLD 206
           E  + LD
Sbjct: 170 ESLSALD 176

Length = 375

>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit

 Score = 63.9 bits (156), Expect = 8e-12
 Identities = 44/148 (29%), Positives = 69/148 (46%), Gaps = 15/148 (10%)

Query: 73  KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF--------RSAKVR--IA 122
             +NF +        +GPNG GK+T ++++   L+P+SGT             KVR  I 
Sbjct: 10  DGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIG 69

Query: 123 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAH----LGSFGVTGNLALQPMYTLSGG 178
           +  Q+     DL+    L MM    G+P+ +        L  F + G  A +P+ T SGG
Sbjct: 70  IVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFEL-GEAADRPVGTYSGG 128

Query: 179 QKSRVAFAKITFKKPHIILLDEPSNHLD 206
            + R+  A     +P ++ LDEP+  LD
Sbjct: 129 MRRRLDIAASLIHQPDVLFLDEPTTGLD 156

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302

>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

 Score = 63.1 bits (154), Expect = 8e-12
 Identities = 43/145 (29%), Positives = 62/145 (42%), Gaps = 17/145 (11%)

Query: 86  AMVGPNGIGKSTILKLIAGELQPSSGTV------FRSAKVRI-----AVFSQHHVDGLDL 134
           A++GPNG GKST+  L+        G +       R A          VF Q  +D LDL
Sbjct: 31  ALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLD-LDL 89

Query: 135 SSNPLLYMMRCFPGVPEQKLRAH----LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF 190
           S    L       G+   + RA     L   G+    A   +  L+GG + RV  A+   
Sbjct: 90  SVRQNLRYHAALHGLSRAEARARIAELLARLGLAER-ADDKVRELNGGHRRRVEIARALL 148

Query: 191 KKPHIILLDEPSNHLDLDAVEALIQ 215
            +P ++LLDEP+  LD  +  A+  
Sbjct: 149 HRPALLLLDEPTVGLDPASRAAITA 173

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236

>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 63.5 bits (155), Expect = 8e-12
 Identities = 62/217 (28%), Positives = 89/217 (41%), Gaps = 60/217 (27%)

Query: 54  PIISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 111
            II     SF YP      L K+++F +     +A+VG NG GKST+ KL+ G L P +G
Sbjct: 4   EIIRVEHISFRYPDAATYAL-KDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAG 62

Query: 112 TV-----------------------------FRSAKVRIAVFSQHHVDGLDLSSNPLLYM 142
           T+                             F  A V+  V       GL+    P   M
Sbjct: 63  TITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDV-----AFGLENIGVPREEM 117

Query: 143 MRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS 202
           +     V +   +  +  F        +  + LSGGQK RVA A +   +P II+LDE +
Sbjct: 118 VE---RVDQALRQVGMEDF------LNREPHRLSGGQKQRVAIAGVLALQPDIIILDEAT 168

Query: 203 NHLD-------LDAVEALIQGLVLFQGGILMVS--HD 230
           + LD       L+ V  L +     Q GI ++S  HD
Sbjct: 169 SMLDPRGRREVLETVRQLKE-----QKGITVLSITHD 200

Length = 279

>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 62.5 bits (153), Expect = 1e-11
 Identities = 48/182 (26%), Positives = 73/182 (40%), Gaps = 52/182 (28%)

Query: 54  PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
           P++   + S GY     L + ++  ++    +A++G NG GK+T+LK I G ++P SG +
Sbjct: 2   PMLEVENLSAGYGKIQAL-RGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRI 60

Query: 114 FRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPG---VPEQKLRAHLGSFGVTGNLAL- 169
                           DG D++  P     R   G   VPE   R       V  NL L 
Sbjct: 61  I--------------FDGEDITGLPPHERARL--GIAYVPE--GRRIFPRLTVEENLLLG 102

Query: 170 -----------------------------QPMYTLSGGQKSRVAFAKITFKKPHIILLDE 200
                                        Q   TLSGG++  +A A+    +P ++LLDE
Sbjct: 103 AYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDE 162

Query: 201 PS 202
           PS
Sbjct: 163 PS 164

Length = 237

>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system

 Score = 62.2 bits (152), Expect = 1e-11
 Identities = 51/212 (24%), Positives = 84/212 (39%), Gaps = 50/212 (23%)

Query: 56  ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG-----ELQPSS 110
           I   D +  Y     L K+++  I      A++GP+G GKST+L+L+          P  
Sbjct: 1   IELRDLNVYYGDKHAL-KDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDE 59

Query: 111 GTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRC---------FPG------------- 148
           G V    K           D  DL  + L    R          FPG             
Sbjct: 60  GEVLLDGK-----------DIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLH 108

Query: 149 ------VPEQKLRAHLGSFGVTGNLALQPM-YTLSGGQKSRVAFAKITFKKPHIILLDEP 201
                   ++++   L    +   +  +     LSGGQ+ R+  A+    +P ++LLDEP
Sbjct: 109 GIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEP 168

Query: 202 SNHLDLDA---VEALIQGLVLFQGGILMVSHD 230
           ++ LD  +   +E LI  L   +  I++V+H+
Sbjct: 169 TSALDPISTAKIEELIAELKK-EYTIVIVTHN 199

Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227

>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 62.9 bits (153), Expect = 1e-11
 Identities = 67/241 (27%), Positives = 110/241 (45%), Gaps = 33/241 (13%)

Query: 56  ISFSDASFGY-PGGPILFK---NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 111
           I F + S+ Y  G P   +   ++N   +     A+VG  G GKST+++ I   L+P++G
Sbjct: 3   IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTG 62

Query: 112 TV---------------FRSAKVRIAVFSQHHVDGL--DLSSNPLLYMMRCFP-GVPEQK 153
           TV                R  + RI +  Q     L  D     +++  + F   + E K
Sbjct: 63  TVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVK 122

Query: 154 LRAH--LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD---LD 208
             AH  L   G + ++  Q  + +SGGQ  ++A   I    P II+LDEP+  LD     
Sbjct: 123 NYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKR 182

Query: 209 AVEALIQGLVLFQG-GILMVSHDEHLISGSVEELWVVSEG----KATPFHGTFHDYKKML 263
            V  L++ L   +   I++VSHD + ++   +E+ V+ EG    + +P    F D KK+ 
Sbjct: 183 QVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSP-KELFKDKKKLA 241

Query: 264 Q 264
            
Sbjct: 242 D 242

Length = 286

>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit

 Score = 63.3 bits (154), Expect = 1e-11
 Identities = 48/162 (29%), Positives = 73/162 (45%), Gaps = 18/162 (11%)

Query: 87  MVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCF 146
           ++GP+G GK+T+L+L+AG  QP SG++    +    V        +   S  L   M   
Sbjct: 1   LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVE 60

Query: 147 P---------GVPEQ----KLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP 193
                      VP      ++   L    +      +P + LSGGQ+ RVA A+    KP
Sbjct: 61  ENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKP-HQLSGGQQQRVALARALVFKP 119

Query: 194 HIILLDEPSNHLDLDAVEALIQGLVLFQG--GI--LMVSHDE 231
            I+LLDEP + LD    + +   L   Q   GI  + V+HD+
Sbjct: 120 KILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQ 161

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325

>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component

 Score = 61.8 bits (151), Expect = 1e-11
 Identities = 49/184 (26%), Positives = 81/184 (44%), Gaps = 44/184 (23%)

Query: 67  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG--ELQPSSGTVFRSAKVRIAVF 124
           G  IL K +N  I      A++GPNG GKST+ K I G  + + + G +           
Sbjct: 12  GKEIL-KGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEIL---------- 60

Query: 125 SQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSF----------GVTGNLALQPM-Y 173
                 G D++  P           PE+  RA LG F          GV     L+ +  
Sbjct: 61  ----FKGEDITDLP-----------PEE--RARLGIFLAFQYPPEIPGVKNADFLRYVNE 103

Query: 174 TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQG---GILMVSHD 230
             SGG+K R    ++   +P + +LDEP + LD+DA+  + + +   +     +L+++H 
Sbjct: 104 GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHY 163

Query: 231 EHLI 234
           + L+
Sbjct: 164 QRLL 167

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200

>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein

 Score = 63.8 bits (156), Expect = 2e-11
 Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 8/95 (8%)

Query: 28  MGHVDEVVNDP-DYKFEFPTPDDRPGPPI------ISFSDASFGY-PGGPILFKNLNFGI 79
           +  +D+V+ +P D   E          P       +   + +FGY P  P L +N +  +
Sbjct: 443 LNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTL 502

Query: 80  DLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
               R+A+VG +G GKSTI KL+AG  QP SG + 
Sbjct: 503 QPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEIL 537

This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710

>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional

 Score = 62.9 bits (153), Expect = 2e-11
 Identities = 58/183 (31%), Positives = 89/183 (48%), Gaps = 58/183 (31%)

Query: 86  AMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPL----LY 141
           A++G +G GKST+L+++AG  QP++G +               +DG+DLS  P     + 
Sbjct: 49  ALLGASGCGKSTLLRMLAGFEQPTAGQIM--------------LDGVDLSHVPPYQRPIN 94

Query: 142 MM----RCFP----------GVPEQKL-RAHLGSFGVTGNLALQPM--------YTLSGG 178
           MM      FP          G+ + KL +A + S  V   L L  M        + LSGG
Sbjct: 95  MMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIAS-RVNEMLGLVHMQEFAKRKPHQLSGG 153

Query: 179 QKSRVAFAKITFKKPHIILLDEPSNHLD--------LDAVEALIQGLVLFQGGI--LMVS 228
           Q+ RVA A+   K+P ++LLDEP   LD        L+ V+      +L + G+  +MV+
Sbjct: 154 QRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVD------ILERVGVTCVMVT 207

Query: 229 HDE 231
           HD+
Sbjct: 208 HDQ 210

Length = 377

>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein

 Score = 61.7 bits (150), Expect = 2e-11
 Identities = 55/195 (28%), Positives = 89/195 (45%), Gaps = 22/195 (11%)

Query: 73  KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF---RSA------KVRIAV 123
            ++N  +   S +A++GP+G GKST+L++IAG  QP SG +    + A        +I  
Sbjct: 17  DDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGF 76

Query: 124 FSQHHV--DGLDLSSNPL--LYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMY--TLSG 177
             QH+     L +  N    L + +      + ++   L    + G   L   Y   LSG
Sbjct: 77  VFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEG---LGDRYPNQLSG 133

Query: 178 GQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGI----LMVSHDEHL 233
           GQ+ RVA A+    +P ++LLDEP   LD    + L   L      +    + V+HD+  
Sbjct: 134 GQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEE 193

Query: 234 ISGSVEELWVVSEGK 248
                + + V+S GK
Sbjct: 194 AMEVADRIVVMSNGK 208

[Transport and binding proteins, Anions]. Length = 237

>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter

 Score = 61.5 bits (150), Expect = 2e-11
 Identities = 58/208 (27%), Positives = 87/208 (41%), Gaps = 49/208 (23%)

Query: 56  ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115
           I   + S  Y G   L   ++  I       ++GP+G GK+T+L+LIAG   P+SG +  
Sbjct: 1   IELENVSKFYGGFVAL-DGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILL 59

Query: 116 SAKVRIA-----------VFSQH-----HVDGLDLSSNPLLYMMRCFP----GVPEQKLR 155
             K  I            VF Q+     H   L +  N        F      +P+ +++
Sbjct: 60  DGK-DITNLPPHKRPVNTVF-QNYALFPH---LTVFENI------AFGLRLKKLPKAEIK 108

Query: 156 AHLGSFGVTGNLALQPM--------YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 207
                  V   L L  +          LSGGQ+ RVA A+    +P ++LLDEP   LDL
Sbjct: 109 E-----RVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDL 163

Query: 208 DAVEALIQGLVLFQG--GI--LMVSHDE 231
              + +   L   Q   GI  + V+HD+
Sbjct: 164 KLRKDMQLELKRLQKELGITFVFVTHDQ 191

PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232

>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional

 Score = 62.0 bits (151), Expect = 2e-11
 Identities = 51/169 (30%), Positives = 72/169 (42%), Gaps = 46/169 (27%)

Query: 69  PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHH 128
            +   ++N  +     + ++G NG GKSTI K +   L PS G V+              
Sbjct: 23  KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVY-------------- 68

Query: 129 VDGLDLSSNPLLYMMRCFPGV----PEQKLRAHLG----SFGVTGNLALQP--------- 171
           VDGLD S    L+ +R   G+    P+ ++ A +     +FG   NL + P         
Sbjct: 69  VDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFG-PENLGIPPEEIRERVDE 127

Query: 172 ------MYT--------LSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 206
                 MY         LSGGQK RVA A I   +P  I+ DEP+  LD
Sbjct: 128 SLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLD 176

Length = 280

>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C

 Score = 61.7 bits (150), Expect = 2e-11
 Identities = 49/198 (24%), Positives = 81/198 (40%), Gaps = 53/198 (26%)

Query: 56  ISFSDASFGY-PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
           I+F    F Y P GP++  N++  I     + +VG +G GKST+ KLI     P +G V 
Sbjct: 1   ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60

Query: 115 RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL----Q 170
                         VDG DL+     ++ R    V ++ +   L +  +  N+AL     
Sbjct: 61  --------------VDGHDLALADPAWLRRQVGVVLQENV---LFNRSIRDNIALADPGM 103

Query: 171 PMY-------------------------------TLSGGQKSRVAFAKITFKKPHIILLD 199
            M                                 LSGGQ+ R+A A+     P I++ D
Sbjct: 104 SMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFD 163

Query: 200 EPSNHLDLDAVEALIQGL 217
           E ++ LD ++  A+++ +
Sbjct: 164 EATSALDYESEHAIMRNM 181

The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237

>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system

 Score = 61.4 bits (150), Expect = 2e-11
 Identities = 48/197 (24%), Positives = 80/197 (40%), Gaps = 48/197 (24%)

Query: 85  IAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPL----- 139
           + ++GPNG GK+T   +I G ++P SG +               +DG D++  P+     
Sbjct: 29  VGLLGPNGAGKTTTFYMIVGLVKPDSGKIL--------------LDGQDITKLPMHKRAR 74

Query: 140 -------------------------LYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYT 174
                                    L +        E+KL   L  F +T +L      +
Sbjct: 75  LGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHIT-HLRKSKASS 133

Query: 175 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAV---EALIQGLVLFQGGILMVSHDE 231
           LSGG++ RV  A+     P  +LLDEP   +D  AV   + +I+ L     G+L+  H+ 
Sbjct: 134 LSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNV 193

Query: 232 HLISGSVEELWVVSEGK 248
                  +  +++ EGK
Sbjct: 194 RETLSITDRAYIIYEGK 210

The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232

>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

 Score = 61.4 bits (150), Expect = 3e-11
 Identities = 52/195 (26%), Positives = 82/195 (42%), Gaps = 61/195 (31%)

Query: 78  GIDLD----SRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD 133
           GI L       + ++GP+G GKST+L+ + G  +P SG++               VDG D
Sbjct: 20  GISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSIT--------------VDGED 65

Query: 134 LSSNPLLYMMRCFPG-VPEQ-KLRAHLGSFGVTGNLALQPM------------------- 172
           +     +  +R   G V +Q  L  HL    V  N+ L P+                   
Sbjct: 66  VGDKKDILKLRRKVGMVFQQFNLFPHLT---VLENVTLAPVKVKKLSKAEAREKALELLE 122

Query: 173 ------------YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD---LDAVEALIQGL 217
                         LSGGQ+ RVA A+     P ++L DEP++ LD   +  V  +++ L
Sbjct: 123 KVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDL 182

Query: 218 VLFQGGILM--VSHD 230
              + G+ M  V+H+
Sbjct: 183 A--EEGMTMIIVTHE 195

Length = 240

>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA

 Score = 62.8 bits (153), Expect = 3e-11
 Identities = 52/197 (26%), Positives = 84/197 (42%), Gaps = 45/197 (22%)

Query: 56  ISFSDASFGYPGGPI-LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV- 113
           + F + +F YPG       +++  I+    +A+VG +G GKST++ LI    +P SG + 
Sbjct: 331 VEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQIL 390

Query: 114 ----------FRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLR-----AHL 158
                       S + ++A+ SQ  V   D  +N + Y           ++      A+ 
Sbjct: 391 LDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRT--EQADRAEIERALAAAYA 448

Query: 159 GSF------------GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 206
             F            G  G L       LSGGQ+ R+A A+   K   I++LDE ++ LD
Sbjct: 449 QDFVDKLPLGLDTPIGENGVL-------LSGGQRQRLAIARALLKDAPILILDEATSALD 501

Query: 207 -------LDAVEALIQG 216
                    A+E L+QG
Sbjct: 502 NESERLVQAALERLMQG 518

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571

>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters

 Score = 61.0 bits (149), Expect = 3e-11
 Identities = 51/201 (25%), Positives = 79/201 (39%), Gaps = 72/201 (35%)

Query: 78  GIDLD----SRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD 133
           GIDL       + ++GP+G GKST+L+ I    +P SGT+               +DGL 
Sbjct: 18  GIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTII--------------IDGLK 63

Query: 134 LSSNPLLYMMRCFPGVPEQKLRAHLG----SFG------VTGNLALQPMY---------- 173
           L+                 +LR  +G     F       V  N+ L P+           
Sbjct: 64  LTD----------DKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAE 113

Query: 174 ---------------------TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEA 212
                                 LSGGQ+ RVA A+     P ++L DEP++ LD + V  
Sbjct: 114 ERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGE 173

Query: 213 LIQGLV-LFQGGILM--VSHD 230
           ++  +  L + G+ M  V+H+
Sbjct: 174 VLDVMKDLAEEGMTMVVVTHE 194

HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213

>gnl|CDD|221805 pfam12848, ABC_tran_2, ABC transporter

 Score = 57.6 bits (140), Expect = 4e-11
 Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query: 1  MQSFIDKFRYNAKRASLVQSRIKALERMGHVDEVVND-PDYKF 42
          ++ FID+FR  A +A   QSRIKALE+M  +++ V   P  +F
Sbjct: 43 LEEFIDRFRAKASKAKQAQSRIKALEKMERIEKPVEKKPKIRF 85

This domain is related to pfam00005. Length = 85

>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein

 Score = 60.5 bits (147), Expect = 5e-11
 Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 15/148 (10%)

Query: 73  KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGT--------VFRSAKVR--IA 122
           + ++F +       ++GPNG GK+T +K++   L+P+SG         V    +VR  I 
Sbjct: 17  RGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIG 76

Query: 123 -VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLR---AHLGSFGVTGNLALQPMYTLSGG 178
            VF    VD  +L+    LY+     GVP  + R     L  F      A + + T SGG
Sbjct: 77  IVFQDLSVDD-ELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGG 135

Query: 179 QKSRVAFAKITFKKPHIILLDEPSNHLD 206
            + R+  A+    +P ++ LDEP+  LD
Sbjct: 136 MRRRLEIARSLVHRPEVLFLDEPTIGLD 163

DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter

 Score = 60.5 bits (147), Expect = 6e-11
 Identities = 52/187 (27%), Positives = 77/187 (41%), Gaps = 50/187 (26%)

Query: 86  AMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPL------ 139
            ++GPNG GK+T L+++AG L+P +G                 VDG D+   P       
Sbjct: 35  GLLGPNGAGKTTTLRMLAGLLEPDAGFA--------------TVDGFDVVKEPAEARRRL 80

Query: 140 --------LY-------MMRCFP---GVPEQKLRAHL----GSFGVTGNLALQPMYTLSG 177
                   LY        +  F    G+   +L A L       G+   L  + +   S 
Sbjct: 81  GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGM-EELLDRRVGGFST 139

Query: 178 GQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL-VLFQGG--ILMVSHDEHLI 234
           G + +VA A+     P ++LLDEP+  LD+ A  AL + +  L   G  IL  +H    I
Sbjct: 140 GMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTH----I 195

Query: 235 SGSVEEL 241
              VE L
Sbjct: 196 MQEVERL 202

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 61.8 bits (151), Expect = 6e-11
 Identities = 44/179 (24%), Positives = 82/179 (45%), Gaps = 25/179 (13%)

Query: 76  NFGIDLDSRI----AMVGPNGIGKSTILKLIAGELQPSSGTVF------------RSAKV 119
           N  + L  +     A++G NG GKST++K++ G  QP SG +              + ++
Sbjct: 20  NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRL 79

Query: 120 RIAVFSQHH--VDGLDLSSNPLLYMMRCFPGVPE-QKLRAHLGSFGVTGNLALQP---MY 173
            I +  QH   V  L ++ N +L +     G+ + ++ RA +        L + P   + 
Sbjct: 80  GIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVA 139

Query: 174 TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QG-GILMVSH 229
            LS G++ RV   K  ++   +++LDEP+  L     + L + L     +G  I+ ++H
Sbjct: 140 DLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITH 198

Length = 501

>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional

 Score = 60.0 bits (145), Expect = 7e-11
 Identities = 53/190 (27%), Positives = 85/190 (44%), Gaps = 30/190 (15%)

Query: 62  SFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF---RSAK 118
            F Y   P+L + ++F +     + + G NG GK+T+LKLIAG L P  G +    +S K
Sbjct: 8   DFDYHDQPLL-QQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIK 66

Query: 119 VRIAVFSQH-----HVDGLDLSSNPLLYMMR-CFPGVPEQKLRAHLGSFGVT-------- 164
             +  + +      H  G+    NP L +   C        +    G+ G+T        
Sbjct: 67  KDLCTYQKQLCFVGHRSGI----NPYLTLRENCL-----YDIHFSPGAVGITELCRLFSL 117

Query: 165 GNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQ--- 221
            +L   P   LS GQK +VA  ++   K  + LLDEP   LD  ++  +I  +   +   
Sbjct: 118 EHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKG 177

Query: 222 GGILMVSHDE 231
           G +L+ SH +
Sbjct: 178 GAVLLTSHQD 187

Length = 200

>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

 Score = 60.5 bits (147), Expect = 7e-11
 Identities = 40/164 (24%), Positives = 67/164 (40%), Gaps = 45/164 (27%)

Query: 73  KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGL 132
           ++++F  +      ++G NG GK+T+L++IA  L P SG V               +DG+
Sbjct: 19  RDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVT--------------IDGV 64

Query: 133 DLSSNPLLYMMRCFPGV-PEQK-------LRAHLGSFG----------------VTGNLA 168
           D   +P     +   GV   ++        R +L  F                 ++  L 
Sbjct: 65  DTVRDPSFVRRKI--GVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQ 122

Query: 169 LQPMY-----TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 207
           L           S G K +VA A+     P I++LDEP++ LD+
Sbjct: 123 LLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDI 166

Length = 245

>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional

 Score = 60.5 bits (147), Expect = 7e-11
 Identities = 59/185 (31%), Positives = 86/185 (46%), Gaps = 35/185 (18%)

Query: 67  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQ 126
           G   +   L+  I     +A+VG +G GKST+L+L+AG   PS+G +        A  ++
Sbjct: 23  GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGT----APLAE 78

Query: 127 HHVDG-LDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL---ALQPMYT-------- 174
              D  L      LL         P +K+  ++G  G+ G     ALQ +          
Sbjct: 79  AREDTRLMFQDARLL---------PWKKVIDNVG-LGLKGQWRDAALQALAAVGLADRAN 128

Query: 175 -----LSGGQKSRVAFAKITFKKPHIILLDEPSNHLD-LDAVE--ALIQGLVLFQG-GIL 225
                LSGGQK RVA A+    +P ++LLDEP   LD L  +E   LI+ L    G  +L
Sbjct: 129 EWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVL 188

Query: 226 MVSHD 230
           +V+HD
Sbjct: 189 LVTHD 193

Length = 257

>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional

 Score = 60.3 bits (147), Expect = 8e-11
 Identities = 48/181 (26%), Positives = 70/181 (38%), Gaps = 54/181 (29%)

Query: 88  VGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPL--LYMMRC 145
           VGPNG GKST+L  +AG L P SG++                 G  L +     L   R 
Sbjct: 28  VGPNGAGKSTLLARMAG-LLPGSGSI--------------QFAGQPLEAWSAAELARHRA 72

Query: 146 F----------------------PGVPEQKLRAHL----GSFGVTGNLALQPMYTLSGGQ 179
           +                           + + + L     + G+   L  + +  LSGG+
Sbjct: 73  YLSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLG-RSVNQLSGGE 131

Query: 180 KSRVAFAKITFK-----KPH--IILLDEPSNHLDLDAVEALIQGLVLF--QGG-ILMVSH 229
             RV  A +  +      P   ++LLDEP N LD+    AL + L     QG  ++M SH
Sbjct: 132 WQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSH 191

Query: 230 D 230
           D
Sbjct: 192 D 192

Length = 248

>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL

 Score = 60.1 bits (146), Expect = 8e-11
 Identities = 52/191 (27%), Positives = 76/191 (39%), Gaps = 36/191 (18%)

Query: 72  FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF---RSAKVRIAVFSQHH 128
            KN++  ++    +A+ GP+G GKST+LK +     P SG +      A V +A  S   
Sbjct: 24  LKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPRE 83

Query: 129 ---------------------VDGLDLSSNPLLYMMRCFPGVP----EQKLRAHLGSFGV 163
                                V  L++ + PLL       GVP      + R  L    +
Sbjct: 84  VLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER-----GVPREAARARARELLARLNI 138

Query: 164 TGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL---DAVEALIQGLVLF 220
              L   P  T SGG++ RV  A+       I+LLDEP+  LD      V  LI      
Sbjct: 139 PERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKAR 198

Query: 221 QGGILMVSHDE 231
              ++ + HDE
Sbjct: 199 GAALIGIFHDE 209

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224

>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter

 Score = 59.5 bits (145), Expect = 8e-11
 Identities = 42/169 (24%), Positives = 76/169 (44%), Gaps = 13/169 (7%)

Query: 73  KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF---------RSAKVRIAV 123
            +++  +        +GPNG GK+T +K+I G ++P SG +            A  RI  
Sbjct: 17  DDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGA 76

Query: 124 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRV 183
             +      +L++   L ++    G+ ++++   L   G+  + A + +   S G K R+
Sbjct: 77  LIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGL-KDSAKKKVKGFSLGMKQRL 135

Query: 184 AFAKITFKKPHIILLDEPSNHLDLDAV---EALIQGLVLFQGGILMVSH 229
             A      P +++LDEP+N LD D +     LI  L      +L+ SH
Sbjct: 136 GIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSH 184

The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208

>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

 Score = 60.0 bits (146), Expect = 9e-11
 Identities = 55/225 (24%), Positives = 91/225 (40%), Gaps = 31/225 (13%)

Query: 51  PGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSS 110
             P I+     S  + GG     +L+F +D      ++GPNG GK+T++ +I G+ +P  
Sbjct: 1   MNPIILYLDGVSVSF-GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQE 59

Query: 111 GTVF--------RSAKVRIA------------VFSQHHV-DGLDLSSN--PLLYMMRCFP 147
           G V         +  + RIA            VF    V + L+L+ N    ++      
Sbjct: 60  GEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFAR 119

Query: 148 GVPEQKLRAHLGSFGVTGNLALQ--PMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHL 205
              E++ R         G    +      LS GQK  +    +  + P ++LLDEP   +
Sbjct: 120 LRAEERRRID-ELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGM 178

Query: 206 DLDAVEALIQGLVLFQGG---ILMVSHDEHLISGSVEELWVVSEG 247
             DA       L+    G   IL+V HD   +    +++ V+ EG
Sbjct: 179 T-DAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEG 222

Length = 249

>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 60.0 bits (146), Expect = 1e-10
 Identities = 50/191 (26%), Positives = 78/191 (40%), Gaps = 32/191 (16%)

Query: 55  IISFSDAS--FGYPGGPI---LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS 109
           +IS S+A+  F + G P+       L+  I     + ++G NG GKST+L  IAG+L+P+
Sbjct: 1   MISLSNATKTF-FKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPT 59

Query: 110 SGTVFRSAKVRIAVFSQHH------------VDG----LDLSSNPLLYMMRCFP-GVPEQ 152
           SG +     V +   S               + G    L +  N  L   R    G+   
Sbjct: 60  SGQIL-IDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSA 118

Query: 153 KLRAHLGSF--GVTG------NLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNH 204
                  SF   +        N     +  LSGGQ+  ++    T   P I+LLDE +  
Sbjct: 119 LNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAA 178

Query: 205 LDLDAVEALIQ 215
           LD    E +++
Sbjct: 179 LDPKTAEFVME 189

Length = 263

>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

 Score = 60.9 bits (148), Expect = 1e-10
 Identities = 51/193 (26%), Positives = 92/193 (47%), Gaps = 14/193 (7%)

Query: 55  IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS-SGTV 113
            I F +     P G +L ++L+F +   + + + GPNG GKS++ +++ GEL P   G +
Sbjct: 451 GIKFENIPLVTPNGDVLIESLSFEVPSGNNLLICGPNGCGKSSLFRIL-GELWPVYGGRL 509

Query: 114 FRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP----GVPEQKLRAHLGSFGVTGNL-- 167
            + AK ++    Q     L    + ++Y          G+ ++ L   L +  +T  L  
Sbjct: 510 TKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER 569

Query: 168 -----ALQP-MYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQ 221
                A+Q  M  LSGG+K R+A A++ + KP   +LDE ++ + +D    + +    F 
Sbjct: 570 EGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFG 629

Query: 222 GGILMVSHDEHLI 234
             +  VSH + L 
Sbjct: 630 ITLFSVSHRKSLW 642

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659

>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 58.6 bits (142), Expect = 3e-10
 Identities = 57/237 (24%), Positives = 100/237 (42%), Gaps = 48/237 (20%)

Query: 54  PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
           P++S S  S  Y G     ++++F +     + +VG +G GK+T+LK I+G L P +GTV
Sbjct: 5   PLLSVSGLSKLY-GPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTV 63

Query: 114 FRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVT--GNLALQP 171
               +           D   +S      ++R   G   Q  R  L    V+  GN+  + 
Sbjct: 64  TYRMR------DGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGL-RMQVSAGGNIGERL 116

Query: 172 M--------------------------------YTLSGGQKSRVAFAKITFKKPHIILLD 199
           M                                 T SGG + R+  A+    +P ++ +D
Sbjct: 117 MAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMD 176

Query: 200 EPSNHLDLDAVEA----LIQGLVL-FQGGILMVSHDEHLISGSVEELWVVSEGKATP 251
           EP+  LD+ +V+A    L++GLV      +++V+HD  +     + L V+ +G+   
Sbjct: 177 EPTGGLDV-SVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVE 232

Length = 258

>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 59.0 bits (143), Expect = 3e-10
 Identities = 53/183 (28%), Positives = 78/183 (42%), Gaps = 40/183 (21%)

Query: 56  ISFSDASFGYPGGPILFKNLNFGIDLD----SRIAMVGPNGIGKSTILKLIAGELQPSSG 111
           I+  + S+ Y  G        F ++L     S  A +G  G GKSTI++L+ G   P+ G
Sbjct: 3   INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQG 62

Query: 112 TVFRSAKVRIAVFSQH--------HVDGL----------------DLSSNPLLYMMRCFP 147
           +V R     I   S++         V GL                D++  P  +      
Sbjct: 63  SV-RVDDTLITSTSKNKDIKQIRKKV-GLVFQFPESQLFEETVLKDVAFGPQNF------ 114

Query: 148 GVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN 203
           GV     E   R  L   G++ +L  +  + LSGGQ  RVA A I   +P I++LDEP+ 
Sbjct: 115 GVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTA 174

Query: 204 HLD 206
            LD
Sbjct: 175 GLD 177

Length = 280

>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor

 Score = 58.5 bits (142), Expect = 3e-10
 Identities = 49/171 (28%), Positives = 76/171 (44%), Gaps = 30/171 (17%)

Query: 87  MVGPNGIGKSTILKLIAGELQPSSG------------TVFRSAKVRIAVFSQHHVDGLDL 134
           +VGPNGIGKST LK++AG+L+P+ G              FR ++++   F++     + +
Sbjct: 31  LVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQN-YFTKLLEGDVKV 89

Query: 135 SSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGN-------LALQPMY-----TLSGGQKSR 182
              P  Y+    P   + K+   L      G        L L+ +       LSGG+  R
Sbjct: 90  IVKP-QYVDL-IPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQR 147

Query: 183 VAFAKITFKKPHIILLDEPSNHLDLD---AVEALIQGLVLFQGGILMVSHD 230
           VA A    +       DEPS++LD+        LI+ L      +L+V HD
Sbjct: 148 VAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHD 198

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255

>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional

 Score = 58.5 bits (141), Expect = 3e-10
 Identities = 51/164 (31%), Positives = 79/164 (48%), Gaps = 32/164 (19%)

Query: 85  IAMVGPNGIGKSTILK----LIAGELQPSS------GTVFRSAK----VRIA------VF 124
           +A++GP+G GKST+L+    LI G+    S       TV R  +    +R +      +F
Sbjct: 33  VALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIF 92

Query: 125 SQHH-VDGLDLSSNPLLYMMRCFP--------GVPEQKLRAH--LGSFGVTGNLALQPMY 173
            Q + V+ L +  N L+  +   P           EQK RA   L   G+  + A Q + 
Sbjct: 93  QQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMV-HFAHQRVS 151

Query: 174 TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL 217
           TLSGGQ+ RVA A+   ++  +IL DEP   LD ++   ++  L
Sbjct: 152 TLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTL 195

Length = 262

>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 58.5 bits (142), Expect = 3e-10
 Identities = 54/239 (22%), Positives = 99/239 (41%), Gaps = 55/239 (23%)

Query: 54  PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
           P++S S     + GG +   N+N  +     ++++GPNG GK+T+   + G  +P+ GT+
Sbjct: 4   PLLSVSGLMMRF-GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTI 62

Query: 114 FRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVP--------EQKLRA---HLGSFG 162
                    +    H++GL       + ++R F  V         E  L A    L + G
Sbjct: 63  ---------LLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKT-G 112

Query: 163 VTGNLALQPMY-----------------------------TLSGGQKSRVAFAKITFKKP 193
           +   L   P +                              L+ GQ+ R+  A+    +P
Sbjct: 113 LFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQP 172

Query: 194 HIILLDEPS---NHLDLDAVEALIQGLV-LFQGGILMVSHDEHLISGSVEELWVVSEGK 248
            I++LDEP+   N  +   ++ LI  L       +L++ HD  L+ G  + ++VV++G 
Sbjct: 173 EILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGT 231

Length = 255

>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 58.5 bits (141), Expect = 4e-10
 Identities = 64/221 (28%), Positives = 100/221 (45%), Gaps = 35/221 (15%)

Query: 55  IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
           +++ SD  F Y   P+L K LN    L     +VG NG GKST+   ++G L+P  G V 
Sbjct: 1   MLATSDLWFRYQDEPVL-KGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVL 59

Query: 115 RSAKV-------------RIAVFSQ---HHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHL 158
              K              ++A   Q     +   D+ S+ + + +R   GVPE ++    
Sbjct: 60  WQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSD-IAFSLRNL-GVPEAEITRR- 116

Query: 159 GSFGVTGNLAL--------QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD---L 207
               V   L L        QP+  LS GQK RVA A     +   +LLDEP+  LD    
Sbjct: 117 ----VDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGR 172

Query: 208 DAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGK 248
             + A+I+ +V     +++ SHD  LI    + ++V+ +G+
Sbjct: 173 TQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQ 213

Length = 271

>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 59.5 bits (145), Expect = 4e-10
 Identities = 60/215 (27%), Positives = 94/215 (43%), Gaps = 46/215 (21%)

Query: 66  PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFS 125
           P G  L   LNF +    RIA+VGP+G GK+++L  + G L P  G    S K+      
Sbjct: 360 PDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQG----SLKINGIELR 414

Query: 126 QHHVDGLDLSS----------NPLLY---------MMRCFPGVPEQKLRAHLGSFGVTGN 166
           +     LD  S          NP L          +    P   +++L+  L +  V+  
Sbjct: 415 E-----LDPESWRKHLSWVGQNPQLPHGTLRDNVLLGN--PDASDEQLQQALENAWVSEF 467

Query: 167 LALQP----------MYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQG 216
           L L P             LS GQ  R+A A+   +   ++LLDEP+  LD  + + ++Q 
Sbjct: 468 LPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQA 527

Query: 217 L--VLFQGGILMVSHD-EHLISGSVEELWVVSEGK 248
           L     +   LMV+H  E L     +++WV+ +G+
Sbjct: 528 LNAASRRQTTLMVTHQLEDLA--QWDQIWVMQDGQ 560

Length = 588

>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter

 Score = 57.7 bits (140), Expect = 6e-10
 Identities = 51/170 (30%), Positives = 74/170 (43%), Gaps = 23/170 (13%)

Query: 56  ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115
           I   + S  +     L  +++  I     +A++GP+G GK+T+L+LIAG  +P SGT+  
Sbjct: 3   IEVRNVSKRFGDFVAL-DDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILF 61

Query: 116 SAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGV-------------PEQKLRAH----L 158
             +    V  Q    G       L   M  F  V             PE ++RA     L
Sbjct: 62  GGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELL 121

Query: 159 GSFGVTGNLALQPMY--TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 206
               +     L   Y   LSGGQ+ RVA A+    +P ++LLDEP   LD
Sbjct: 122 KLVQLDW---LADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALD 168

Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239

>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional

 Score = 57.9 bits (140), Expect = 7e-10
 Identities = 43/154 (27%), Positives = 73/154 (47%), Gaps = 20/154 (12%)

Query: 67  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF----------RS 116
           G   +F N++  +      A++GP+GIGK+T+L+LI G++ P  G +           RS
Sbjct: 18  GNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRS 77

Query: 117 ----AKVRIAVFSQHHVDGLDLSS-NPLLYMMRCFPGVPEQKLRA----HLGSFGVTGNL 167
                + R+++  Q      D++  + + Y +R    +P   L +     L + G+ G  
Sbjct: 78  RLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAA 137

Query: 168 ALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP 201
            L P   LSGG   R A A+    +P +I+ DEP
Sbjct: 138 KLMPS-ELSGGMARRAALARAIALEPDLIMFDEP 170

Length = 269

>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK

 Score = 57.1 bits (138), Expect = 9e-10
 Identities = 54/217 (24%), Positives = 90/217 (41%), Gaps = 48/217 (22%)

Query: 53  PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGT 112
            P++  S  S  Y GG    ++++F +     + +VG +G GKST+L  +AG L P  GT
Sbjct: 1   KPLLQVSGLSKSY-GGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGT 59

Query: 113 VFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVT--GNLALQ 170
                     + S   ++   LS      +MR   G   Q  R  L    V+   N+  +
Sbjct: 60  ------ATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGL-RMRVSAGANIGER 112

Query: 171 PM--------------------------------YTLSGGQKSRVAFAKITFKKPHIILL 198
            M                                   SGG + R+  A+    +P ++ +
Sbjct: 113 LMAIGARHYGNIRATAQDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFM 172

Query: 199 DEPSNHLDLDAVEA----LIQGLVLFQG-GILMVSHD 230
           DEP+  LD+ +V+A    L++GLV   G  +++V+HD
Sbjct: 173 DEPTGGLDV-SVQARLLDLLRGLVRDLGLAVIIVTHD 208

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253

>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

 Score = 57.2 bits (139), Expect = 1e-09
 Identities = 41/168 (24%), Positives = 66/168 (39%), Gaps = 36/168 (21%)

Query: 72  FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDG 131
              ++F I     + +VG +G GKST+ +LI G  +P+SG +    K           D 
Sbjct: 29  VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGK-----------DI 77

Query: 132 LDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK 191
             LS                +++   L   G+      +  + LSGGQ+ R+  A+    
Sbjct: 78  TKLSKEER-----------RERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALAL 126

Query: 192 KPHIILLDEPSNHLDLDAVEALIQGLVL---------FQGGILMVSHD 230
            P +I+ DEP + LD       +Q  +L              L +SHD
Sbjct: 127 NPKLIVADEPVSALD-----VSVQAQILNLLKDLQEELGLTYLFISHD 169

Length = 268

>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 57.4 bits (139), Expect = 1e-09
 Identities = 57/214 (26%), Positives = 97/214 (45%), Gaps = 53/214 (24%)

Query: 73  KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGL 132
            N+N  I+    + ++G  G GKST+++ + G L+P+SG +               +DG+
Sbjct: 24  DNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKII--------------IDGV 69

Query: 133 DLSSNPL-LYMMRCFPGV----PEQKLRAHLG----SFGVTGNLAL----------QPM- 172
           D++   + L  +R   G+    PE +L         +FG   NL L          + M 
Sbjct: 70  DITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPI-NLGLSEEEIENRVKRAMN 128

Query: 173 --------------YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD---LDAVEALIQ 215
                         + LSGGQK RVA A +   +P I++LDEP+  LD    D +   I+
Sbjct: 129 IVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIK 188

Query: 216 GL-VLFQGGILMVSHDEHLISGSVEELWVVSEGK 248
            L   +   I++VSH    ++   + + V+++GK
Sbjct: 189 ELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGK 222

Length = 287

>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional

 Score = 57.6 bits (139), Expect = 2e-09
 Identities = 32/116 (27%), Positives = 60/116 (51%)

Query: 151 EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAV 210
           E +  + L     T  + ++   T SGG + R+A A+  F +P ++LLDEP+NHLDL AV
Sbjct: 321 EARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAV 380

Query: 211 EALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQSR 266
             L   L+ +    ++VSH    ++  V ++  +   K   + G +  +++  + +
Sbjct: 381 LWLETYLLKWPKTFIVVSHAREFLNTVVTDILHLHGQKLVTYKGDYDTFERTREEQ 436

Length = 718

>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C

 Score = 56.5 bits (137), Expect = 2e-09
 Identities = 19/59 (32%), Positives = 31/59 (52%)

Query: 56  ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
           I F + +F Y     + K++NF I     +A+VGP G GK+T++ L+     P  G + 
Sbjct: 3   IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQIL 61

Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229

>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional

 Score = 57.0 bits (138), Expect = 2e-09
 Identities = 46/164 (28%), Positives = 74/164 (45%), Gaps = 50/164 (30%)

Query: 74  NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD 133
           NLN  I   + + ++GP+G GK+T+L+L+AG  +P+ G +F              +DG D
Sbjct: 24  NLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIF--------------IDGED 69

Query: 134 LSSNPLLYMMRC--------FP---------------GVPEQKLRAHLGSFGVTGNLAL- 169
           ++   +     C        FP               GVP+++ +       V   L L 
Sbjct: 70  VTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQR-----VKEALELV 124

Query: 170 -----QPMYT--LSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 206
                +  Y   +SGGQ+ RVA A+    KP ++L DEP ++LD
Sbjct: 125 DLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLD 168

Length = 351

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 54.7 bits (131), Expect = 2e-09
 Identities = 34/150 (22%), Positives = 57/150 (38%), Gaps = 34/150 (22%)

Query: 85  IAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMR 144
           I +VGP G GK+T+ + +A EL P  G V               +DG D+    L  ++ 
Sbjct: 5   ILIVGPPGSGKTTLARALARELGPPGGGVIY-------------IDGEDILEEVLDQLL- 50

Query: 145 CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNH 204
                                 +      + SG  + R+A A     KP +++LDE ++ 
Sbjct: 51  --------------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSL 90

Query: 205 LDLDAVEALIQGLVLFQGGILMVSHDEHLI 234
           LD +    L+    L    +L    +  +I
Sbjct: 91  LDAEQEALLLLLEELRLLLLLKSEKNLTVI 120

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter

 Score = 56.1 bits (136), Expect = 2e-09
 Identities = 53/232 (22%), Positives = 100/232 (43%), Gaps = 52/232 (22%)

Query: 55  IISFSDASFGYPGGP---ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 111
           +I   + S  +          K+++  +       ++G +G GKST+++ I G  +P+SG
Sbjct: 1   MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSG 60

Query: 112 TVF--------------RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP----GVPEQK 153
           +V               R A+ RI +  QH     +L S+  ++     P    GVP+ +
Sbjct: 61  SVLVDGTDLTLLSGKELRKARRRIGMIFQH----FNLLSSRTVFENVALPLEIAGVPKAE 116

Query: 154 LRAHLGSFGVTGNLALQPMY--------TLSGGQKSRVAFAKITFKKPHIILLDEPSNHL 205
           +        V   L L  +          LSGGQK RV  A+     P ++L DE ++ L
Sbjct: 117 IEER-----VLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSAL 171

Query: 206 D---LDAVEALIQ------GLVLFQGGILMVSHDEHLISGSVEELWVVSEGK 248
           D     ++ AL++      GL      I++++H+  ++    + + V+ +G+
Sbjct: 172 DPETTQSILALLRDINRELGLT-----IVLITHEMEVVKRICDRVAVMEKGE 218

MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233

>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA

 Score = 56.7 bits (137), Expect = 2e-09
 Identities = 42/151 (27%), Positives = 70/151 (46%), Gaps = 20/151 (13%)

Query: 85  IAMVGPNGIGKSTILKLIAGELQPSSGTVF--------RSAKVR--IAVFSQHHVDGLDL 134
           +  +GPNG GKST +K+I G L P SG+V            +V+  I    +H+   LD+
Sbjct: 31  VGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDM 90

Query: 135 SSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQP-----MYTLSGGQKSRVAFAKIT 189
                L  +    G+  Q L+  +    +   + L+P     +  LS G + RV  A+  
Sbjct: 91  YVREYLQFIAGIYGMKGQLLKQRVEE--MIELVGLRPEQHKKIGQLSKGYRQRVGLAQAL 148

Query: 190 FKKPHIILLDEPSNHLD---LDAVEALIQGL 217
              P +++LDEP+  LD   L  +  +I+ +
Sbjct: 149 IHDPKVLILDEPTTGLDPNQLVEIRNVIKNI 179

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301

>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein

 Score = 56.7 bits (137), Expect = 2e-09
 Identities = 59/212 (27%), Positives = 91/212 (42%), Gaps = 44/212 (20%)

Query: 76  NFGIDLDSRI------AMVGPNGIGKSTILKLIAGELQPSSG-------TVFRSAKV--- 119
           +F +D D  +      A+ G +G GK+T+++LIAG  +P  G       T+F S K    
Sbjct: 11  DFSLDADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFL 70

Query: 120 -----RIA-VFSQ-----HHVDGLDLSSNPLLY-MMRCFP---GVPEQKLRAHLGSFGVT 164
                RI  VF +     H    L +  N L Y M R  P    +  +++   LG     
Sbjct: 71  PPEKRRIGYVFQEARLFPH----LSVRGN-LRYGMKRARPSERRISFERVIELLG----I 121

Query: 165 GNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL----VLF 220
           G+L  +    LSGG+K RVA  +     P ++L+DEP   LD      ++  L      F
Sbjct: 122 GHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEF 181

Query: 221 QGGILMVSHDEHLISGSVEELWVVSEGKATPF 252
              IL VSH    +    + + V+ +G+    
Sbjct: 182 GIPILYVSHSLQEVLRLADRVVVLEDGRVAAA 213

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354

>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional

 Score = 56.3 bits (136), Expect = 4e-09
 Identities = 26/61 (42%), Positives = 41/61 (67%)

Query: 170 QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSH 229
           +P+   SGG + R+  A+    +  ++LLDEP+NHLDLDAV  L + L  +QG ++++SH
Sbjct: 145 RPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISH 204

Query: 230 D 230
           D
Sbjct: 205 D 205

Length = 638

>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 55.8 bits (135), Expect = 4e-09
 Identities = 52/181 (28%), Positives = 77/181 (42%), Gaps = 36/181 (19%)

Query: 56  ISFSDASFGY-PGGP---ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 111
           I+F      Y    P       ++N  I   S +A++G  G GKST+L+ + G LQP+SG
Sbjct: 3   ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSG 62

Query: 112 TVFRSAKVRIAVFSQHHVDGL----------------------DLSSNPLLYMMRCFPGV 149
           TV    +V  A      +  L                      D+   P+ +      GV
Sbjct: 63  TVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNF------GV 116

Query: 150 PE----QKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHL 205
            E    QK R  +   G+   L  +  + LSGGQ  RVA A +   +P +++LDEP+  L
Sbjct: 117 SEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGL 176

Query: 206 D 206
           D
Sbjct: 177 D 177

Length = 290

>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily

 Score = 54.5 bits (132), Expect = 4e-09
 Identities = 47/192 (24%), Positives = 76/192 (39%), Gaps = 44/192 (22%)

Query: 56  ISFSDASFGYPGGP-----ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS- 109
           +SF + +      P      L KN++         A++GP+G GKST+L  +AG      
Sbjct: 4   LSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG 63

Query: 110 -SGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA 168
            SG V               ++G  L       ++  +  VP+  +     +  V   L 
Sbjct: 64  VSGEVL--------------INGRPLDKRSFRKII-GY--VPQDDI--LHPTLTVRETL- 103

Query: 169 LQPMYT-----LSGGQKSRVAFAKITFKKPHIILLDEPSNHLD----LDAVEALIQGLVL 219
              M+      LSGG++ RV+ A      P ++ LDEP++ LD    L  +  L +   L
Sbjct: 104 ---MFAAKLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRR---L 157

Query: 220 FQGG--ILMVSH 229
              G  I+   H
Sbjct: 158 ADTGRTIICSIH 169

ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194

>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]

 Score = 55.3 bits (134), Expect = 4e-09
 Identities = 54/191 (28%), Positives = 84/191 (43%), Gaps = 29/191 (15%)

Query: 89  GPNGIGKSTILKLIAGELQPSSGTV------------FRSAKVRIAVFSQHH--VDGLDL 134
           GPNG GK+T   +I G ++P SG +             + A++ I    Q       L +
Sbjct: 37  GPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTV 96

Query: 135 SSNPL--LYMMRCFPGVPEQKLRAH--LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF 190
             N +  L +        E+K      L  F +T +L     Y+LSGG++ RV  A+   
Sbjct: 97  EDNIMAVLEIREKDLKKAERKEELDALLEEFHIT-HLRDSKAYSLSGGERRRVEIARALA 155

Query: 191 KKPHIILLDEPSNHLDLDAVEALIQGLVLF---QG-GILMVSH--DEHLISGSVEELWVV 244
             P  ILLDEP   +D  AV   IQ ++     +G G+L+  H   E L     +  +++
Sbjct: 156 ANPKFILLDEPFAGVDPIAV-IDIQRIIKHLKDRGIGVLITDHNVRETL--DICDRAYII 212

Query: 245 SEGKATPFHGT 255
           S+GK     G+
Sbjct: 213 SDGKVL-AEGS 222

Length = 243

>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD

 Score = 55.3 bits (134), Expect = 4e-09
 Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 30/158 (18%)

Query: 72  FK---NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF-------RSAKVRI 121
           FK   +L+  +D      ++GPNG GK+T++ +I G+ +P  G+V           + +I
Sbjct: 15  FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQI 74

Query: 122 A------------VFSQHHV-DGLDLSSN---PLLYMMRCFPGVPEQKLRAH--LGSFGV 163
           A            VF    V + L+L+      +   +  F    E+K R    L + G+
Sbjct: 75  ARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLF-FRLSAEEKDRIEEVLETIGL 133

Query: 164 TGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP 201
               A +    LS GQK  +    +  + P ++LLDEP
Sbjct: 134 AD-EADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEP 170

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242

>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

 Score = 55.8 bits (134), Expect = 4e-09
 Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 27/188 (14%)

Query: 67  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQ 126
           G   +  +L+  I+    +A++G +G GK+T+L+ IAG ++ +  T   +   R    + 
Sbjct: 16  GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAP 75

Query: 127 HHVDGLDLSSNPLLYMMRCFP----------GVPEQKLRAHLGSFGVTGNLALQPM---- 172
            H  GL L    L      FP          G+  QK+     +  V   L L  +    
Sbjct: 76  PHKRGLAL----LFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAA 131

Query: 173 ----YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV-----LFQGG 223
                 LSGG + R+A A+    +P ++LLDEP + LD +    + + +      L +  
Sbjct: 132 AHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELT 191

Query: 224 ILMVSHDE 231
           IL V+HD+
Sbjct: 192 ILCVTHDQ 199

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362

>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C

 Score = 54.4 bits (132), Expect = 5e-09
 Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 56  ISFSDASFGYPGGPI----LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 111
           IS  DASF +  G        K++N  +     +A+VGP G GKS++L  + GEL+  SG
Sbjct: 1   ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60

Query: 112 TVFRSAKVRIAVFSQ 126
           +V       IA  SQ
Sbjct: 61  SVSVPG--SIAYVSQ 73

This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204

>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

 Score = 55.1 bits (133), Expect = 5e-09
 Identities = 55/189 (29%), Positives = 86/189 (45%), Gaps = 42/189 (22%)

Query: 78  GIDLDSR----IAMVGPNGIGKSTILKLIAGELQPSSGTV------------FRSAKVRI 121
           GIDL+ +    +A++GP+G GK+T+L+ I    QP +GT+                K  I
Sbjct: 21  GIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80

Query: 122 AVFSQH------------HVDGLD-LSSNPLLYMMRCFPGVP----EQKLRAHLGSFGVT 164
               QH            H   L+ +   P++       G P      + R  L   G+ 
Sbjct: 81  RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVI-----VKGEPKEEATARARELLAKVGLA 135

Query: 165 GNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAV-EAL--IQGLVLFQ 221
           G     P   LSGGQ+ RVA A+    +P +IL DEP++ LD + V E L  I+ L   +
Sbjct: 136 GKETSYPR-RLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEK 194

Query: 222 GGILMVSHD 230
             +++V+H+
Sbjct: 195 RTMVIVTHE 203

Length = 250

>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins

 Score = 54.5 bits (132), Expect = 7e-09
 Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 28/106 (26%)

Query: 56  ISFSDASFGYPGGP--ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
           I F + SF YP  P   + K L+  I     +A+VG +G GKST++ L+     P+SG +
Sbjct: 1   IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60

Query: 114 FRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLG 159
                          +DG+D+    L            + LR+ +G
Sbjct: 61  L--------------LDGVDIRDLNL------------RWLRSQIG 80

MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238

>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

 Score = 55.6 bits (134), Expect = 7e-09
 Identities = 60/252 (23%), Positives = 95/252 (37%), Gaps = 53/252 (21%)

Query: 30  HVDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPG-----GPILFKNLNFGIDLDSR 84
            + ++   P YK +FP P   P    +   +  F Y       GPI     N  I     
Sbjct: 298 KIAKLELAP-YKADFPRPQAFPDWKTLELRNVRFAYQDNAFHVGPI-----NLTIKRGEL 351

Query: 85  IAMVGPNGIGKSTILKLIAGELQPSSGTVF------------RSAKVRIAVFSQHHVD-- 130
           + ++G NG GKST+  L+ G  QP SG +                K+  AVFS +H+   
Sbjct: 352 VFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQ 411

Query: 131 --GLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQ----PMYTLSGGQKSRVA 184
             G +  ++P             Q +   L    +    +L         LS GQK R+A
Sbjct: 412 LLGPEGKASP-------------QLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLA 458

Query: 185 FAKITFKKPHIILLDEPSNHLDLDAV------EALIQGLVLFQGGILMVSHDEHLISGSV 238
                 ++  I++LDE +   D D        + L+  L      I  +SHD+H      
Sbjct: 459 LLLALLEERDILVLDEWA--ADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYF-IHA 515

Query: 239 EELWVVSEGKAT 250
           + L  +  G+ +
Sbjct: 516 DRLLEMRNGQLS 527

Length = 546

>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 54.6 bits (132), Expect = 8e-09
 Identities = 40/171 (23%), Positives = 79/171 (46%), Gaps = 21/171 (12%)

Query: 55  IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV- 113
           +I+  + S  Y    +L  +++  I      +++GPNG GKST+L +++  L+  SG + 
Sbjct: 1   MITIENVSKSYGTKVVL-DDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEIT 59

Query: 114 FRSAKV----------RIAVFSQHHVDGLDLSSNPLLYMMRCFP---GVP----EQKLRA 156
               ++          ++++  Q +     L+   L+   R FP   G       + +  
Sbjct: 60  IDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGR-FPYSQGRLTKEDRRIINE 118

Query: 157 HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 207
            +    +  +L+ + +  LSGGQ+ R   A +  +    +LLDEP N+LD+
Sbjct: 119 AIEYLHLE-DLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDM 168

Length = 252

>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 54.7 bits (131), Expect = 9e-09
 Identities = 57/226 (25%), Positives = 101/226 (44%), Gaps = 39/226 (17%)

Query: 55  IISFSDASFGY-PGGPILFKNLNFGIDLD----SRIAMVGPNGIGKSTILKLIAGELQPS 109
           +I F   ++ Y P  P   + L F IDL+    S  A++G  G GKST+L+ + G LQP+
Sbjct: 1   MIKFEKVNYTYQPNSPFASRAL-FDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT 59

Query: 110 SGTV---------------FRSAKVRIAVFSQHHVDGL-------DLSSNPLLYMMRCFP 147
            G V                +  + ++ V  Q     L       D++  P  + +    
Sbjct: 60  EGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIP--K 117

Query: 148 GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 207
              E+     L   G+      +  + LSGGQ  RVA A I   +P +++LDEP+  LD 
Sbjct: 118 EKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLD- 176

Query: 208 DAVEALIQGLVLFQG------GILMVSHDEHLISGSVEELWVVSEG 247
              +A I+ + LF+        +++V+H    ++   + ++++ +G
Sbjct: 177 --PKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKG 220

Length = 288

>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 54.1 bits (130), Expect = 1e-08
 Identities = 54/200 (27%), Positives = 93/200 (46%), Gaps = 26/200 (13%)

Query: 73  KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV-------------FRSAKV 119
           K ++F +     +A++G NG GKST+ K++AG ++P+SG +             FRS ++
Sbjct: 30  KPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRI 89

Query: 120 RIAVFSQHHVDGLDLSSN-------PLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPM 172
           R+ +F Q     L+           PL       P    +++   L   G+  + A    
Sbjct: 90  RM-IF-QDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYP 147

Query: 173 YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQG--GILMVSHD 230
           + L+ GQK RVA A+    +P II+ DE    LD+     LI  ++  Q   GI  +   
Sbjct: 148 HMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVT 207

Query: 231 EHL--ISGSVEELWVVSEGK 248
           +H+  I    +++ V+ EG+
Sbjct: 208 QHIGMIKHISDQVLVMHEGE 227

Length = 267

>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 53.7 bits (129), Expect = 2e-08
 Identities = 60/234 (25%), Positives = 99/234 (42%), Gaps = 52/234 (22%)

Query: 70  ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL----QPSSGTV------------ 113
            + ++L+  I+     A++G NG GKST+LK +AG+L     P    V            
Sbjct: 15  AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLA 74

Query: 114 ----FRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAH---------LGS 160
                R A++R AV  Q        S+  ++ ++  +P         H         L  
Sbjct: 75  AIDAPRLARLR-AVLPQAAQPAFAFSAREIV-LLGRYPHARRAGALTHRDGEIAWQALAL 132

Query: 161 FGVTGNLALQPMYTLSGGQKSRVAFAKI---------TFKKPHIILLDEPSNHLD----- 206
            G T  L  + + TLSGG+ +RV FA++           + P  +LLDEP+  LD     
Sbjct: 133 AGATA-LVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQH 191

Query: 207 --LDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHD 258
             LD V  L +    +  G+L + HD +L +   + + ++++G     HG   D
Sbjct: 192 RLLDTVRRLARD---WNLGVLAIVHDPNLAARHADRIAMLADGAIVA-HGAPAD 241

Length = 272

>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional

 Score = 54.6 bits (131), Expect = 2e-08
 Identities = 59/244 (24%), Positives = 105/244 (43%), Gaps = 46/244 (18%)

Query: 45  PTPDDRPGPPIISFSDASFGYPG---GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKL 101
             P  +PG P IS  +  F +      P L  ++N  I + S +A+VG  G GK++++  
Sbjct: 604 QNPPLQPGAPAISIKNGYFSWDSKTSKPTL-SDINLEIPVGSLVAIVGGTGEGKTSLISA 662

Query: 102 IAGELQP--SSGTVFR-------------SAKVRIAVF------SQHHVDGLDLSSNPLL 140
           + GEL    +S  V R             +A VR  +       S+ +   +D+++  L 
Sbjct: 663 MLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTA--LQ 720

Query: 141 YMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE 200
           + +   PG    +    +G  GV           +SGGQK RV+ A+  +    I + D+
Sbjct: 721 HDLDLLPG----RDLTEIGERGVN----------ISGGQKQRVSMARAVYSNSDIYIFDD 766

Query: 201 PSNHLDLDAVEALIQGLVL--FQGGI-LMVSHDEHLISGSVEELWVVSEGKATPFHGTFH 257
           P + LD      +    +    +G   ++V++  H +   ++ + +VSEG      GTF 
Sbjct: 767 PLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLP-LMDRIILVSEGMIKE-EGTFA 824

Query: 258 DYKK 261
           +  K
Sbjct: 825 ELSK 828

Length = 1495

>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 53.5 bits (128), Expect = 2e-08
 Identities = 52/192 (27%), Positives = 77/192 (40%), Gaps = 46/192 (23%)

Query: 55  IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
           +I   + S+ YP G    +N+N  I     I ++G NG GKST+   + G L+P  G V 
Sbjct: 1   MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVL 60

Query: 115 RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGV----PEQKLRAHLG----SFGVTGN 166
                         V G+D      L  +R   G+    PE +          +FG   N
Sbjct: 61  --------------VSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFG-PEN 105

Query: 167 LALQPM-----------------------YTLSGGQKSRVAFAKITFKKPHIILLDEPSN 203
           L L P+                        TLSGGQ   VA A I   +P  ++ DE ++
Sbjct: 106 LCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTS 165

Query: 204 HLDLDAVEALIQ 215
            LD D+  A+++
Sbjct: 166 MLDPDSGIAVLE 177

Length = 274

>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 53/209 (25%), Positives = 85/209 (40%), Gaps = 42/209 (20%)

Query: 76  NFGIDLDSRI------AMVGPNGIGKSTILKLIAGELQPSSG-------TVFRSAK---- 118
           NF +D +  +      A+ GP+G GK++++ +IAG  +P  G        +  + K    
Sbjct: 12  NFALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFL 71

Query: 119 ----VRIA-VFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPM 172
                RI  VF    +     +  N L Y M        + +RA      +   L ++ +
Sbjct: 72  PPEKRRIGYVFQDARLFPHYTVRGN-LRYGM-------WKSMRAQFDQ--LVALLGIEHL 121

Query: 173 -----YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL-VLFQG---G 223
                 TLSGG+K RVA  +     P ++L+DEP   LDL     ++  L  L       
Sbjct: 122 LDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIP 181

Query: 224 ILMVSHDEHLISGSVEELWVVSEGKATPF 252
           IL VSH    +    + + V+  GK    
Sbjct: 182 ILYVSHSLDEVLRLADRVVVLENGKVKAS 210

Length = 352

>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor

 Score = 52.2 bits (125), Expect = 2e-08
 Identities = 40/151 (26%), Positives = 57/151 (37%), Gaps = 52/151 (34%)

Query: 85  IAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMR 144
           I +VGPNG GK+T +K++AG+L P+                    D  D  +        
Sbjct: 28  IGIVGPNGTGKTTAVKILAGQLIPNGDN-----------------DEWDGIT-------- 62

Query: 145 CFPGVPEQKLRAHLGSFGVTGNLALQPMY-TLSGGQKSRVAFAKITFKKPHIILLDEPSN 203
                                    +P Y  LSGG+  RVA A    +     L DEPS 
Sbjct: 63  ----------------------PVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSA 100

Query: 204 HLD----LDAVEALIQGLVLFQGGILMVSHD 230
           +LD    L+A  A+ +     +   L+V HD
Sbjct: 101 YLDIEQRLNAARAIRRLSEEGKKTALVVEHD 131

The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177

>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

 Score = 53.3 bits (128), Expect = 3e-08
 Identities = 58/218 (26%), Positives = 95/218 (43%), Gaps = 41/218 (18%)

Query: 73  KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV-------------FRSAKV 119
           K L+F +     +A++G NG GKST+ K++AG ++P+SG +             +RS ++
Sbjct: 30  KPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRI 89

Query: 120 RIAVFS---------QHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQ 170
           R+ +F          Q     LD    PL       P   E+++   L   G+  + A  
Sbjct: 90  RM-IFQDPSTSLNPRQRISQILDF---PLRLNTDLEPEQREKQIIETLRQVGLLPDHASY 145

Query: 171 PMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQG--GILMVS 228
             + L+ GQK R+  A+    +P +I+ DE    LD+     LI  ++  Q   GI  + 
Sbjct: 146 YPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIY 205

Query: 229 HDEHL-----IS--------GSVEELWVVSEGKATPFH 253
             +HL     IS        G V E    ++  A+P H
Sbjct: 206 VTQHLGMMKHISDQVLVMHQGEVVERGSTADVLASPLH 243

Length = 267

>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 53.1 bits (128), Expect = 3e-08
 Identities = 37/166 (22%), Positives = 66/166 (39%), Gaps = 42/166 (25%)

Query: 74  NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD 133
           N++F +       ++GPNG GK+T  ++I G L+P+ G +                +G  
Sbjct: 20  NISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEI--------------TWNGGP 65

Query: 134 LSSNP----------------------LLYMMRCFPGVPEQKLRAHLG----SFGVTGNL 167
           LS                         L Y+     G+P+ +++  L        + G  
Sbjct: 66  LSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAE-LKGMPKAEIQKKLQAWLERLEIVGKK 124

Query: 168 ALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL 213
             + +  LS G + ++ F      +P +++LDEP + LD   VE L
Sbjct: 125 T-KKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELL 169

Length = 300

>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein

 Score = 52.1 bits (126), Expect = 3e-08
 Identities = 46/192 (23%), Positives = 79/192 (41%), Gaps = 47/192 (24%)

Query: 56  ISFSDASFGY-PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
           I F + S  Y P  P + KN++F I    ++ +VG  G GKS++L  +   ++ SSG++ 
Sbjct: 3   IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSI- 61

Query: 115 RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVP---------------------EQK 153
                         +DG+D+S   L  +      +P                     +++
Sbjct: 62  -------------LIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEE 108

Query: 154 L-----RAHLGSFGVTGNLALQPMYT-----LSGGQKSRVAFAKITFKKPHIILLDEPSN 203
           L     R  L  F  +    L  +       LS GQ+  +  A+   +K  I++LDE + 
Sbjct: 109 LWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATA 168

Query: 204 HLDLDAVEALIQ 215
            +D    +ALIQ
Sbjct: 169 SVD-PETDALIQ 179

The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221

>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional

 Score = 52.7 bits (127), Expect = 5e-08
 Identities = 49/165 (29%), Positives = 74/165 (44%), Gaps = 38/165 (23%)

Query: 67  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG-----------------ELQPS 109
           G  ++ K++N  I     +  VGP+G GKST+L++IAG                 ++ P+
Sbjct: 14  GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA 73

Query: 110 S---GTVFRSAKVRIAVFSQHHVD-----GLDLSSNPLLYMMRCFPGVPEQKLRAHLGSF 161
               G VF+S     A++    V      GL L+      + +    V E    AHL   
Sbjct: 74  ERGVGMVFQS----YALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHL--- 126

Query: 162 GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 206
                L  +P   LSGGQ+ RVA  +    +P + LLDEP ++LD
Sbjct: 127 -----LDRKPK-ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165

Length = 369

>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional

 Score = 52.6 bits (126), Expect = 7e-08
 Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 11/133 (8%)

Query: 74  NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV-FRSAKVRIAVFS--QHHVD 130
           N++F +     + ++G NG GKST+  LIAG   P+ GTV  + +   IA+ S     + 
Sbjct: 42  NISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLT 101

Query: 131 GLDLSSNPLLYMMRCFPGVPEQKLR---AHLGSFGVTGNLALQPMYTLSGGQKSRVAFAK 187
           G++      L M     G+ ++K++     +  F   G    QP+ T S G KSR+ FA 
Sbjct: 102 GIENIELKGLMM-----GLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAI 156

Query: 188 ITFKKPHIILLDE 200
                P I+++DE
Sbjct: 157 SVHINPDILVIDE 169

Length = 549

>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

 Score = 52.7 bits (127), Expect = 7e-08
 Identities = 25/77 (32%), Positives = 48/77 (62%), Gaps = 4/77 (5%)

Query: 174 TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL--VLFQGGI-LMVSHD 230
           TLSGGQ+ R+A A+  +  P +++LDEP+++LD +   AL   +     +GG  ++++H 
Sbjct: 472 TLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHR 531

Query: 231 EHLISGSVEELWVVSEG 247
              +  SV+++ V+ +G
Sbjct: 532 PSAL-ASVDKILVLQDG 547

Length = 580

>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional

 Score = 52.8 bits (127), Expect = 7e-08
 Identities = 57/208 (27%), Positives = 96/208 (46%), Gaps = 38/208 (18%)

Query: 54  PIISFSDASFGYPGGP---ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSS 110
            ++   D    YP G     + K ++  I     +A+VG +G GKST++ ++    +P+S
Sbjct: 3   ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTS 62

Query: 111 GTVFRSAKVRIA-----------------VFSQHHV-DGLDLSSN---PLLYMMRCFPGV 149
           GT +R A   +A                 +F ++H+   L  + N   P +Y      G+
Sbjct: 63  GT-YRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVY-----AGL 116

Query: 150 P--EQKLRAH--LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHL 205
              ++ LRA   L   G+   +  QP   LSGGQ+ RV+ A+       +IL DEP+  L
Sbjct: 117 ERKQRLLRAQELLQRLGLEDRVEYQPS-QLSGGQQQRVSIARALMNGGQVILADEPTGAL 175

Query: 206 DLDAVEALIQGL-VLFQGG--ILMVSHD 230
           D  + E ++  L  L   G  +++V+HD
Sbjct: 176 DSHSGEEVMAILHQLRDRGHTVIIVTHD 203

Length = 648

>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional

 Score = 52.0 bits (125), Expect = 8e-08
 Identities = 48/158 (30%), Positives = 70/158 (44%), Gaps = 34/158 (21%)

Query: 74  NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG-------TVFR-SAKVRIAVFS 125
           +++  I     +A++GP+G GK+T+L++IAG    +SG        V R  A+ R   F 
Sbjct: 20  DISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFV 79

Query: 126 -QHHVDGLDLSSNPLLYMMRCFPGVP--------EQKLRAHLGSFGVT--------GNLA 168
            QH+          L   M  F  +          ++  A      VT         +LA
Sbjct: 80  FQHYA---------LFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLA 130

Query: 169 LQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 206
            +    LSGGQK RVA A+    +P I+LLDEP   LD
Sbjct: 131 DRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALD 168

Length = 353

>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein

 Score = 52.2 bits (125), Expect = 9e-08
 Identities = 47/218 (21%), Positives = 86/218 (39%), Gaps = 43/218 (19%)

Query: 39  DYKFEFPTPDDRPGPP----IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIG 94
           D  F+   P D P  P     + F   +F +        +++F       +A+VGP G G
Sbjct: 314 DSVFQREEPADAPELPNVKGAVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAG 373

Query: 95  KSTILKLIAGELQPSSG----------------------TVFRSAKVRIAVFSQHHVDGL 132
           K+T++ L+     P+ G                      TVF+ A +      ++   G 
Sbjct: 374 KTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGR 433

Query: 133 DLSSNPLLYMMRCFPGVP---EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT 189
           + +++  +Y             ++   +    G  GN        LSGG++ R+A A+  
Sbjct: 434 EGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGN-------RLSGGERQRLAIARAI 486

Query: 190 FKKPHIILLDEPSNHLDL-------DAVEALIQGLVLF 220
            K   I++LDE ++ LD+       +A++AL +    F
Sbjct: 487 LKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTF 524

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 52.1 bits (125), Expect = 9e-08
 Identities = 51/198 (25%), Positives = 83/198 (41%), Gaps = 57/198 (28%)

Query: 78  GIDLDSR----IAMVGPNGIGKSTILKLIAGELQPSSGTV-FR----------------- 115
            + L+ +      +VG +G GK+T+ K+IAG L+P+SG V  R                 
Sbjct: 302 NVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRG 361

Query: 116 SAKVRIAVFSQH-----HVD---------GLDLSSNPLLYMMRCF-----PGVPEQKLRA 156
            AK  I +  Q      H           GL+L     L  M+        G  E+K   
Sbjct: 362 RAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDE--LARMKAVITLKMVGFDEEKAEE 419

Query: 157 HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD----LDAVEA 212
            L  +             LS G++ RVA A++  K+P I++LDEP+  +D    +D   +
Sbjct: 420 ILDKY----------PDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHS 469

Query: 213 LIQGLVLFQGGILMVSHD 230
           +++     +   ++VSHD
Sbjct: 470 ILKAREEMEQTFIIVSHD 487

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD

 Score = 51.2 bits (123), Expect = 9e-08
 Identities = 55/236 (23%), Positives = 97/236 (41%), Gaps = 48/236 (20%)

Query: 71  LFKNLNFGIDLDSRIAMVGPNGIGKST----ILKLIAGELQPSSGTVFRSAKVRIAVFSQ 126
           L ++LN  +     +A+VG +G GKS     IL L+   L  +SG +    +  + +   
Sbjct: 1   LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLS-- 58

Query: 127 HHVDGLDLSS---------NPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPM----- 172
             + G  +++         NPL  M         + LR+          L L+ +     
Sbjct: 59  --IRGRHIATIMQNPRTAFNPLFTMGNHA----IETLRSLGKLSKQARALILEALEAVGL 112

Query: 173 -----------YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA---VEALIQGLV 218
                      + LSGG   RV  A     +P  ++ DEP+  LD+     V  L++ L 
Sbjct: 113 PDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELR 172

Query: 219 LFQG-GILMVSHDEHLISGSVEELWVVSEGK----ATP---FHGTFHDYKKMLQSR 266
              G GIL+++HD  +++   +E+ V+ +G+     T    F+   H+  + L S 
Sbjct: 173 QLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTRKLLSA 228

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 48/181 (26%), Positives = 73/181 (40%), Gaps = 46/181 (25%)

Query: 85  IAMVGPNGIGKSTILKLIAGEL---------QPSSGTVFR---------------SAKVR 120
           + ++GPNGIGKST LK++AGEL          PS   V +                 ++R
Sbjct: 103 VGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELR 162

Query: 121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQ--KLRAHLGSFG-VTGNLALQPMYT--- 174
                Q+ VD           + +   G   +  K     G F  V   L L+ +     
Sbjct: 163 AVHKPQY-VD----------LIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDV 211

Query: 175 --LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLD---AVEALIQGLVLFQGGILMVSH 229
             LSGG+  RVA A    +   +   DEPS++LD+        +I+ L      +++V H
Sbjct: 212 SELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEH 271

Query: 230 D 230
           D
Sbjct: 272 D 272

Length = 591

>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter

 Score = 50.7 bits (122), Expect = 1e-07
 Identities = 44/173 (25%), Positives = 83/173 (47%), Gaps = 25/173 (14%)

Query: 86  AMVGPNGIGKSTILKLIAGELQPSSGTV-FRSAKVRIAVFSQHHVD------GL--DLS- 135
            ++GPNG GK+T +++I G + P SG V F    + IA   ++ +       GL   +  
Sbjct: 30  GLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAA--RNRIGYLPEERGLYPKMKV 87

Query: 136 SNPLLYMMRCFPGVPEQKLRAH----LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK 191
            + L+Y+ +   G+ +++ R      L    +    A + +  LS G + +V F      
Sbjct: 88  IDQLVYLAQ-LKGLKKEEARRRIDEWLERLEL-SEYANKRVEELSKGNQQKVQFIAAVIH 145

Query: 192 KPHIILLDEPSNHLD---LDAVEALIQGLVLFQGGILMVSHDEHLISGSVEEL 241
            P +++LDEP + LD   ++ ++ +I+ L      +++ +H   L    VEEL
Sbjct: 146 DPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMEL----VEEL 194

This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210

>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit

 Score = 51.8 bits (124), Expect = 1e-07
 Identities = 46/194 (23%), Positives = 78/194 (40%), Gaps = 38/194 (19%)

Query: 67  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF------------ 114
           GG     + +  I       ++G +G GKST ++++   ++P++G +F            
Sbjct: 4   GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPV 63

Query: 115 -----RSAKV-----RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQ----KLRAHLGS 160
                R  K+     + A+F   H+  L  +S           G PEQ    K    L  
Sbjct: 64  ELREVRRKKIGMVFQQFALFP--HMTILQNTS----LGPE-LLGWPEQERKEKALELLKL 116

Query: 161 FGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF 220
            G+       P   LSGG + RV  A+    +P I+L+DE  + LD    +++   L   
Sbjct: 117 VGLEEYEHRYP-DELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKL 175

Query: 221 QGG----ILMVSHD 230
           Q      I+ ++HD
Sbjct: 176 QATLQKTIVFITHD 189

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363

>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 50.9 bits (122), Expect = 1e-07
 Identities = 51/198 (25%), Positives = 75/198 (37%), Gaps = 38/198 (19%)

Query: 67  GGPIL--FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG------------- 111
           GG  L   +N++  ++    + + GP+G GKST+L+ +     P  G             
Sbjct: 20  GGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDL 79

Query: 112 ------TVFRSAKVRIAVFSQH-----HVDGLDLSSNPLLYMMRCFPGVP----EQKLRA 156
                  V    +  I   SQ       V  LD+ + PLL       GVP      K   
Sbjct: 80  VTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLAR-----GVPREVARAKAAD 134

Query: 157 HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL---DAVEAL 213
            L    +   L      T SGG++ RV  A+       I+LLDEP+  LD      V  L
Sbjct: 135 LLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVEL 194

Query: 214 IQGLVLFQGGILMVSHDE 231
           I+        ++ + HDE
Sbjct: 195 IREAKARGAALVGIFHDE 212

Length = 235

>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional

 Score = 51.4 bits (124), Expect = 2e-07
 Identities = 23/62 (37%), Positives = 36/62 (58%)

Query: 171 PMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHD 230
            M  ++ G K RV  A+  F  P I+LLDEP+N+LD++ +  L   L      ++++SHD
Sbjct: 152 LMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHD 211

Query: 231 EH 232
            H
Sbjct: 212 RH 213

Length = 530

>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 59/207 (28%), Positives = 92/207 (44%), Gaps = 40/207 (19%)

Query: 53  PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGT 112
            P +SF      +PG   L  +++F        A++G NG GKST+LK+++G  QP +G+
Sbjct: 2   SPYLSFDGIGKTFPGVKAL-DDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGS 60

Query: 113 V--------FRSAKVR----IAVFSQ--HHVDGLDLSSNPLLYMMRCFP---GVPEQKL- 154
           +        F S        +A+  Q  H V  + ++ N  LY+ +  P   G+  ++L 
Sbjct: 61  ILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAEN--LYLGQ-LPHKGGIVNRRLL 117

Query: 155 ----RAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAV 210
               R  L   GV  +    P+  LS GQ+  V  AK   +   +I  DEP++ L    +
Sbjct: 118 NYEAREQLEHLGVDID-PDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREI 176

Query: 211 EALI--------QGLVLFQGGILMVSH 229
           E L         +G V     IL VSH
Sbjct: 177 EQLFRVIRELRAEGRV-----ILYVSH 198

Length = 501

>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 46/182 (25%), Positives = 66/182 (36%), Gaps = 32/182 (17%)

Query: 39  DYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTI 98
            YK EFP P   P    +   + +F Y         +N  I     + ++G NG GKST+
Sbjct: 306 PYKAEFPRPQAFPDWQTLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTL 365

Query: 99  LKLIAGELQPSSGTVF----------RSA--KVRIAVFSQHH-----VDGLDLSSNPLLY 141
             L+ G  QP SG +                K+  AVF+  H     +      +NP L 
Sbjct: 366 AMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPANPALV 425

Query: 142 MMRCFPGVPEQKLRAHLG---SFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILL 198
                     +K    L       +           LS GQK R+A      ++  I+LL
Sbjct: 426 ----------EKWLERLKMAHKLELEDGRISNL--KLSKGQKKRLALLLALAEERDILLL 473

Query: 199 DE 200
           DE
Sbjct: 474 DE 475

Length = 547

>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional

 Score = 50.2 bits (120), Expect = 2e-07
 Identities = 52/192 (27%), Positives = 81/192 (42%), Gaps = 54/192 (28%)

Query: 54  PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLI--AGELQPS-- 109
           PI+  SD S  Y     L  +++     +   A++GP+G GKST+L+ I    +L P   
Sbjct: 4   PILQVSDLSVYYNKKKAL-NSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVT 62

Query: 110 -SGTVF---------RSAKVRI-----AVFSQHHVDGLDLSSNPLLYMMRCFPGVP---- 150
            +G++          R+  V +      VF Q +   + +  N ++Y +R   G+     
Sbjct: 63  ITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYEN-VVYGLR-LKGIKDKQV 120

Query: 151 ----------------EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH 194
                           E K R H  + G            LSGGQ+ RV  A++    P 
Sbjct: 121 LDEAVEKSLKGASIWDEVKDRLHDSALG------------LSGGQQQRVCIARVLATSPK 168

Query: 195 IILLDEPSNHLD 206
           IILLDEP++ LD
Sbjct: 169 IILLDEPTSALD 180

Length = 252

>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 55/220 (25%), Positives = 85/220 (38%), Gaps = 69/220 (31%)

Query: 54  PIISFSDASFG-YPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGT 112
           P     D SF  YPG                 + +VG +G GK+T+L  ++  L P +G 
Sbjct: 18  PRKGCRDVSFDLYPG---------------EVLGIVGESGSGKTTLLNALSARLAPDAGE 62

Query: 113 V-FRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGV----PEQKLRAHLGSFGVTGNL 167
           V +R              D   LS      ++R   G     P   LR  + S G  GN+
Sbjct: 63  VHYRMR-------DGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQV-SAG--GNI 112

Query: 168 ALQPM------Y--------------------------TLSGGQKSRVAFAKITFKKPHI 195
             + M      Y                          T SGG + R+  A+     P +
Sbjct: 113 GERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRL 172

Query: 196 ILLDEPSNHLDLDAVEA----LIQGLVLFQG-GILMVSHD 230
           + +DEP+  LD+ +V+A    L++GLV   G  +++V+HD
Sbjct: 173 VFMDEPTGGLDV-SVQARLLDLLRGLVRELGLAVVIVTHD 211

Length = 258

>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 4/58 (6%)

Query: 71  LFKNLN--FGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQ 126
           LF+N++  FG    +R  ++G NG GKST +K++ G+L+PS+G V      R+    Q
Sbjct: 16  LFENISVKFG--GGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQ 71

Length = 530

>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins

 Score = 49.8 bits (120), Expect = 3e-07
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 6/86 (6%)

Query: 174 TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ-GLVLFQGG--ILMVSHD 230
            LSGGQK R+A A+   + P I+LLDE ++ LD +  E L+Q  L     G   ++++H 
Sbjct: 139 QLSGGQKQRIAIARALLRNPKILLLDEATSALDAE-SEKLVQEALDRAMKGRTTIVIAHR 197

Query: 231 EHLISGSVEELWVVSEGKATPFHGTF 256
              I  + + + V+  G+     GT 
Sbjct: 198 LSTIRNA-DLIAVLQNGQVVE-QGTH 221

MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238

>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein

 Score = 50.2 bits (120), Expect = 3e-07
 Identities = 43/173 (24%), Positives = 70/173 (40%), Gaps = 38/173 (21%)

Query: 75  LNFGIDLDSRIAMVGPNGIGKSTILKLI------------------------AGELQPSS 110
           LNF +    ++A++GP+G GKSTIL+++                         G L P+ 
Sbjct: 19  LNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPAD 78

Query: 111 GTVFRSAKVRIAVFSQH-----HVDGLDLSSNPLLYMMRCFPGVPEQKLRAH----LGSF 161
               R  + +I +  Q      H   LD   N     +    G+   +        L   
Sbjct: 79  EKHLRQMRNKIGMVFQSFNLFPHKTVLD---NVTEAPVLVL-GMARAEAEKRAMELLDMV 134

Query: 162 GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALI 214
           G+       P   LSGGQ+ RVA A+    +P ++L DE ++ LD + V  ++
Sbjct: 135 GLADKADHMPA-QLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVL 186

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252

>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 50.0 bits (119), Expect = 3e-07
 Identities = 50/189 (26%), Positives = 90/189 (47%), Gaps = 31/189 (16%)

Query: 71  LFKNLNFGIDLDSRIAMVGPNGIGKSTILKL-------------IAGELQPSSGTVFRSA 117
           + K++   I  +S   ++GP+G GKST+LK+             + G++      +F+  
Sbjct: 25  ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84

Query: 118 KVRI-----AVFSQH----HVDGLDLSSNPL----LYMMRCFPGVPEQKLRAHLGSFGVT 164
            +++      VF Q     H+   D  + PL    +   R    + E+ LR  +G +   
Sbjct: 85  AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLR-KVGLWKEV 143

Query: 165 GNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL---DAVEALIQGLVLFQ 221
            +    P   LSGGQ+ R+  A+    KP ++L+DEP++ +D+    A+E LI  L   +
Sbjct: 144 YDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-E 202

Query: 222 GGILMVSHD 230
             I++VSH+
Sbjct: 203 IAIVIVSHN 211

Length = 257

>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional

 Score = 50.6 bits (122), Expect = 3e-07
 Identities = 54/176 (30%), Positives = 79/176 (44%), Gaps = 52/176 (29%)

Query: 65  YPGG-PILFKNLNFGIDLDSR----IAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV 119
           Y G   ++      GIDLD      I +VGP+G GKST+L+++AG  + +SG ++   +V
Sbjct: 13  YDGKTQVIK-----GIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRV 67

Query: 120 --------R-IA-VFSQHHVDGLDLSSNPLLY-MMRCFP---------GVPEQKLRAHLG 159
                   R IA VF            N  LY  M             G+P+ ++   + 
Sbjct: 68  VNELEPADRDIAMVF-----------QNYALYPHMSVRENMAYGLKIRGMPKAEIEERVA 116

Query: 160 SFGVTGNLALQPMYT-----LSGGQKSRVAFAKITFKKPHIILLDEP-SNHLDLDA 209
                  L L+P+       LSGGQ+ RVA  +   ++P + L DEP SN   LDA
Sbjct: 117 E--AARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSN---LDA 167

Length = 356

>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

 Score = 49.8 bits (119), Expect = 3e-07
 Identities = 55/187 (29%), Positives = 81/187 (43%), Gaps = 28/187 (14%)

Query: 85  IAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQH----HVDGLDLSSNPLL 140
           + +VGPNG GKST+L  +AG +   SG++ + A   +  +S      H   L     P  
Sbjct: 28  LHLVGPNGAGKSTLLARMAG-MTSGSGSI-QFAGQPLEAWSATELARHRAYLSQQQTPP- 84

Query: 141 YMMRCFP----GVPEQKLRAHLGSFGVTGNLAL-----QPMYTLSGGQKSRVAFAKITFK 191
           + M  +       P++     L    V G LAL     +    LSGG+  RV  A +  +
Sbjct: 85  FAMPVWHYLTLHQPDKTRTELLND--VAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQ 142

Query: 192 -------KPHIILLDEPSNHLDLDAVEALIQGLVLF--QG-GILMVSHDEHLISGSVEEL 241
                     ++LLDEP N LD+    AL + L     QG  I+M SHD +         
Sbjct: 143 ITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRA 202

Query: 242 WVVSEGK 248
           W++  GK
Sbjct: 203 WLLKRGK 209

Length = 248

>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional

 Score = 49.1 bits (117), Expect = 3e-07
 Identities = 49/166 (29%), Positives = 78/166 (46%), Gaps = 15/166 (9%)

Query: 81  LDSRIAMV-GPNGIGKSTILKLIAGELQPSSGTVF-------RSAKVRIAVFSQHHVDGL 132
           L S I  + G NG GKS++L++IAG +QPSSG ++         AK        +    L
Sbjct: 24  LPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKL 83

Query: 133 DLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK 192
           +++    L          E  L A +  F +  +L  +  Y+LS G +  VA A++   +
Sbjct: 84  EMTVFENLKFWSEIYNSAET-LYAAIHYFKLH-DLLDEKCYSLSSGMQKIVAIARLIACQ 141

Query: 193 PHIILLDEPSNHLDLDAVEALIQGLVLFQ---GGI-LMVSHDEHLI 234
             + LLDE   +L  +    L+  L++ +   GGI L+ SH E  I
Sbjct: 142 SDLWLLDEVETNLSKEN-RDLLNNLIVMKANSGGIVLLSSHLESSI 186

Length = 195

>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 56/198 (28%), Positives = 88/198 (44%), Gaps = 27/198 (13%)

Query: 52  GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 111
            PP++     S  Y G  +L K ++F +      A++G NG GKST++K+IAG + P SG
Sbjct: 8   APPLLCARSISKQYSGVEVL-KGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSG 66

Query: 112 TVFRSAKVRI-AVFSQHHVDGLDL-SSNPLLYMMRCFP----------GVP-----EQKL 154
           T+            ++ H  G+ L    PLL     FP          G+P      QK+
Sbjct: 67  TLEIGGNPCARLTPAKAHQLGIYLVPQEPLL-----FPNLSVKENILFGLPKRQASMQKM 121

Query: 155 RAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALI 214
           +  L + G   +L      +L    +  V   +   +   I++LDEP+  L     E L 
Sbjct: 122 KQLLAALGCQLDLDSSAG-SLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLF 180

Query: 215 QGL--VLFQG-GILMVSH 229
             +  +L QG GI+ +SH
Sbjct: 181 SRIRELLAQGVGIVFISH 198

Length = 510

>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein

 Score = 50.3 bits (120), Expect = 3e-07
 Identities = 54/213 (25%), Positives = 92/213 (43%), Gaps = 51/213 (23%)

Query: 72  FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDG 131
             N++  +       ++G +G GKST+++ +    +P+SG+V               VDG
Sbjct: 21  LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVI--------------VDG 66

Query: 132 LDLS--SNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL------QPM----------- 172
            DL+  SN  L   R   G+  Q     L S  V GN+AL       P            
Sbjct: 67  QDLTTLSNSELTKARRQIGMIFQHFNL-LSSRTVFGNVALPLELDNTPKDEIKRKVTELL 125

Query: 173 -------------YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL-- 217
                          LSGGQK RVA A+     P ++L DE ++ LD    +++++ L  
Sbjct: 126 ALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKE 185

Query: 218 VLFQGG--ILMVSHDEHLISGSVEELWVVSEGK 248
           +  + G  IL+++H+  ++    + + V+S G+
Sbjct: 186 INRRLGLTILLITHEMDVVKRICDCVAVISNGE 218

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343

>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 49.4 bits (118), Expect = 4e-07
 Identities = 55/204 (26%), Positives = 90/204 (44%), Gaps = 35/204 (17%)

Query: 57  SFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKL------------IAG 104
           S  + +  Y    ILF ++N  I      A +GP+G GKST L+             + G
Sbjct: 7   SVKNLNLWYGSKQILF-DINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKG 65

Query: 105 EL--------QPSSGTVFRSAKVRIAVFSQHHVDGLDLSSN----PLLYMM----RCFPG 148
           EL           +  V   AKV + VF + +     +  N    P L+ +    +    
Sbjct: 66  ELDIDGIDVYSVDTNVVLLRAKVGM-VFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDE 124

Query: 149 VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD-- 206
           + E+ L + +G +   G+      + LSGGQ+ R+  A+    KP ++L+DEP + LD  
Sbjct: 125 IVEKSLTS-VGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPV 183

Query: 207 -LDAVEALIQGLVLFQGGILMVSH 229
             + +E LIQ L      I++V+H
Sbjct: 184 ATNVIENLIQELKK-NFTIIVVTH 206

Length = 251

>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

 Score = 50.0 bits (120), Expect = 5e-07
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 7/78 (8%)

Query: 43  EFPTPDDR---PGPP-IISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKS 96
           E P   +R   P P   +S    +   PG   PIL K ++F +     + ++GP+G GKS
Sbjct: 318 ELPAAAERMPLPAPQGALSVERLTAAPPGQKKPIL-KGISFALQAGEALGIIGPSGSGKS 376

Query: 97  TILKLIAGELQPSSGTVF 114
           T+ +L+ G   P+SG+V 
Sbjct: 377 TLARLLVGIWPPTSGSVR 394

Length = 580

>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 49.2 bits (117), Expect = 5e-07
 Identities = 44/172 (25%), Positives = 70/172 (40%), Gaps = 50/172 (29%)

Query: 72  FKNLNFGIDLDSRIAMVGPNGIGKSTILKLI----------------------------- 102
            KN++  I  +S  A++GP+G GKST ++ +                             
Sbjct: 28  LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87

Query: 103 AGELQPSSGTVFRSAK-VRIAVFSQ-------HHVDGLDLSSNPLLYMMRCFPGVPEQKL 154
             EL+ + G VF+      ++++         H  +  DL             GV E  L
Sbjct: 88  VVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLD------------GVVENAL 135

Query: 155 RAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 206
           R+    +  T +    P  +LSGGQ+ R+  A+    KP IIL DEP++ LD
Sbjct: 136 RS-AALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALD 186

Length = 258

>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50

 Score = 48.4 bits (116), Expect = 6e-07
 Identities = 48/188 (25%), Positives = 77/188 (40%), Gaps = 51/188 (27%)

Query: 79  IDLDSRI-AMVGPNGIGKSTILKLIA----GELQPSS------GTVFRSAKVRIAV---F 124
           I+  S +  +VG NG GK+TI++ +     GEL P+S        + R  +VR  V   F
Sbjct: 18  IEFFSPLTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAF 77

Query: 125 SQHHVDGLDL----SSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQK 180
              + +G       S   L  ++ C           H G         L      SGG+K
Sbjct: 78  E--NANGKKYTITRSLAILENVIFC-----------HQGESNW---PLLDMRGRCSGGEK 121

Query: 181 S------RVAFAKITFKKPHIILLDEPSNHLD--------LDAVEALIQGLVLFQGGILM 226
                  R+A A+       I+ LDEP+ +LD         + +E   +    FQ  +++
Sbjct: 122 VLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEER-KSQKNFQ--LIV 178

Query: 227 VSHDEHLI 234
           ++HDE L+
Sbjct: 179 ITHDEELV 186

The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204

>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C

 Score = 49.1 bits (117), Expect = 6e-07
 Identities = 47/178 (26%), Positives = 70/178 (39%), Gaps = 60/178 (33%)

Query: 67  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTI----LKL--IAGELQPSSGTVFRSAKVR 120
           GG  + +N++F I    R+ ++G  G GKST+    L+L    G++Q             
Sbjct: 15  GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQ------------- 61

Query: 121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQK-------LRAHLGSFG---------VT 164
                   +DG+  +S PL    + F GV  QK        R +L  +G         V 
Sbjct: 62  --------IDGVSWNSVPLQKWRKAF-GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVA 112

Query: 165 GNLALQPM----------------YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 206
             + L+ +                  LS G K  +  A+    K  I+LLDEPS HLD
Sbjct: 113 EEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLD 170

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275

>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE

 Score = 48.7 bits (117), Expect = 7e-07
 Identities = 43/185 (23%), Positives = 69/185 (37%), Gaps = 72/185 (38%)

Query: 59  SDASFGYPGGPILFKNLNFGIDLDSRI----AMVGPNGIGKSTILKLIAGELQPSSGTVF 114
           S+ +  Y    IL      G+ L+        ++G NG+GK+T+LK + G L   SG++ 
Sbjct: 4   SNLNVYYGQSHILR-----GVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSI- 57

Query: 115 RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLG----------SFGVT 164
                         +DG D++  P           P ++ RA +              V 
Sbjct: 58  -------------RLDGEDITKLP-----------PHERARAGIAYVPQGREIFPRLTVE 93

Query: 165 GNL-----------------------ALQPMYT-----LSGGQKSRVAFAKITFKKPHII 196
            NL                        L+ M       LSGGQ+ ++A A+    +P ++
Sbjct: 94  ENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLL 153

Query: 197 LLDEP 201
           LLDEP
Sbjct: 154 LLDEP 158

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230

>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

 Score = 49.5 bits (118), Expect = 8e-07
 Identities = 43/168 (25%), Positives = 70/168 (41%), Gaps = 37/168 (22%)

Query: 62  SFG---YPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK 118
           SFG         + +NLN  I     +A+VG +G GK+T+L++I G  +      +R   
Sbjct: 386 SFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDS 445

Query: 119 VRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRA-----HLGSFGVTGNLALQ--- 170
            ++ V             N +  ++   PG  E +        HL S     N A++   
Sbjct: 446 GKVEV-----------PKNTVSALI---PGEYEPEFGEVTILEHLRSKTGDLNAAVEILN 491

Query: 171 ------------PMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 206
                           LS GQK R   AK+  ++P+++L+DE + HLD
Sbjct: 492 RAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLD 539

Length = 593

>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional

 Score = 49.1 bits (118), Expect = 8e-07
 Identities = 56/224 (25%), Positives = 88/224 (39%), Gaps = 73/224 (32%)

Query: 74  NLNFGIDLD---SRI-AMVGPNGIGKSTILKLIAGELQPSSG-------TVFRSA----- 117
           +L   ++L      I A+ G +G GK++++  I+G  +P  G        +F +      
Sbjct: 12  DLCLTVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICL 71

Query: 118 ---KVRIA-VFSQH------HVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL 167
              K RI  VF          V G     N L Y M          + A      +   L
Sbjct: 72  PPEKRRIGYVFQDARLFPHYKVRG-----N-LRYGMAK-------SMVAQFDK--IVALL 116

Query: 168 ALQPM-----YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL-------DAVEALIQ 215
            ++P+      +LSGG+K RVA  +     P ++L+DEP   LDL         +E L +
Sbjct: 117 GIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAR 176

Query: 216 GLVLFQGGILMVSH--DE------HLI---------SGSVEELW 242
            + +    IL VSH  DE       ++          G +EE+W
Sbjct: 177 EINI---PILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVW 217

Length = 352

>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional

 Score = 48.3 bits (115), Expect = 1e-06
 Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 3/118 (2%)

Query: 85  IAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMR 144
           I +VG NG GKST+  +I G L P+ G V R+ +V +   S      L    N + + M 
Sbjct: 53  IGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIEN-IEFKML 111

Query: 145 CFPGVPEQ--KLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE 200
           C     ++   +   +  F   G    QP+   S G ++++ F+      P I+++DE
Sbjct: 112 CMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDE 169

Length = 264

>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 48.4 bits (115), Expect = 1e-06
 Identities = 59/215 (27%), Positives = 95/215 (44%), Gaps = 36/215 (16%)

Query: 52  GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLI--AGELQPS 109
              II+ SD    Y G     K ++   + +   A++GP+G GKST L+ +    +L P 
Sbjct: 2   AKKIITSSDVHLFY-GKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPG 60

Query: 110 ---SGTVFRSAK---------VRI-----AVFSQHHVDGLDLSSNPLLYMMRCFPGVP-- 150
              +G V    +         V++      VF Q +     +  N ++Y +R   GV   
Sbjct: 61  VTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPFSIYEN-VIYGLR-LAGVKDK 118

Query: 151 -------EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN 203
                  E  L+       V  +L  +   +LSGGQ+ RV  A++   KP +ILLDEP++
Sbjct: 119 AVLDEAVETSLKQAAIWDEVKDHLH-ESALSLSGGQQQRVCIARVLAVKPDVILLDEPTS 177

Query: 204 HLDLDAVEALIQGLVLF---QGGILMVSHDEHLIS 235
            LD       I+ ++L    Q  I++V+H  H  S
Sbjct: 178 ALD-PISSTQIENMLLELRDQYTIILVTHSMHQAS 211

Length = 252

>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 48.3 bits (116), Expect = 1e-06
 Identities = 52/249 (20%), Positives = 95/249 (38%), Gaps = 50/249 (20%)

Query: 61  ASFGYPGGPI-LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVF 114
            SF    G +     ++F +     + +VG +G GKS + K I G L         G + 
Sbjct: 9   VSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEIL 68

Query: 115 ------------RSAKVR---IAVFSQHHVDGLDLSSNPLL--------YMMRCFPGVP- 150
                          K+R   IA+  Q   D +  S NP++         +     G+  
Sbjct: 69  FDGKDLLSLSEKELRKIRGKEIAMIFQ---DPMT-SLNPVMTIGDQIAEVLRLHGKGLSK 124

Query: 151 ---EQKLRAHLGSFGVTGNLALQPMY--TLSGGQKSRVAFAKITFKKPHIILLDEPSNHL 205
              +++    L   G+         Y   LSGG + RV  A      P +++ DEP+  L
Sbjct: 125 KEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTAL 184

Query: 206 DLDA---VEALIQGLVLFQG-GILMVSHDEHLISGSVEELWVVSEGK----ATP---FHG 254
           D+     +  L++ L   +G  +++++HD  +++   + + V+  G+          F  
Sbjct: 185 DVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKN 244

Query: 255 TFHDYKKML 263
             H Y + L
Sbjct: 245 PKHPYTRGL 253

Length = 316

>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C

 Score = 47.7 bits (113), Expect = 1e-06
 Identities = 47/193 (24%), Positives = 73/193 (37%), Gaps = 37/193 (19%)

Query: 56  ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115
           +  ++  F +  G     N+N  I       +VG  G GKS++L  I GE+Q   G V  
Sbjct: 1   VQVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHW 60

Query: 116 SAKVRIAVFSQHHVDGLDLSSNPLLYMMR-------------CFPGVPEQKLRAHLGSFG 162
           S K                +   + Y  +              F G P  K R       
Sbjct: 61  SNKNES---EPSFEATRSRNRYSVAYAAQKPWLLNATVEENITF-GSPFNKQRYKA---- 112

Query: 163 VTGNLALQP----------------MYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 206
           VT   +LQP                   LSGGQ+ R+  A+  ++  +I+ LD+P + LD
Sbjct: 113 VTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALD 172

Query: 207 LDAVEALIQGLVL 219
           +   + L+Q  +L
Sbjct: 173 IHLSDHLMQEGIL 185

The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218

>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 43/189 (22%), Positives = 83/189 (43%), Gaps = 25/189 (13%)

Query: 85  IAMVGPNGIGKSTILKLIAGELQPSSGTVF--------------RSAKVRIAVFSQHHVD 130
           + ++G +G GKST+ +L+ G  +P+ GTV               R+ +  + +  Q    
Sbjct: 40  VGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPS 99

Query: 131 GLDLSSN-------PLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRV 183
            ++           PL ++        + ++   L   G+    A +    LSGGQ  R+
Sbjct: 100 AVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRI 159

Query: 184 AFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQ--GGI--LMVSHDEHLISGSVE 239
             A+    KP +I+LDE  ++LD+     +++ L   Q   G   L ++HD  L+    +
Sbjct: 160 NIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQ 219

Query: 240 ELWVVSEGK 248
            + V+ +G+
Sbjct: 220 RVAVMDKGQ 228

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265

>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 51/198 (25%), Positives = 84/198 (42%), Gaps = 53/198 (26%)

Query: 73  KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG--ELQPSSGTVFRSAKVRIAVFSQHH-V 129
           KN+N  I  +   A++GP+G GKST +K +    EL PS  T  +       +F + + V
Sbjct: 41  KNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100

Query: 130 DGLDLSSNPLLYMMRCFP--------------GVPEQKL--------------------R 155
           + L  +   +      FP              G+ ++K                     R
Sbjct: 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDR 160

Query: 156 AHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA---VEA 212
            H  ++G            LSGGQ+ R+  A+    +P +IL+DEP++ LD  +   VE 
Sbjct: 161 LHDNAYG------------LSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEE 208

Query: 213 LIQGLVLFQGGILMVSHD 230
           L+Q L      I++V+H+
Sbjct: 209 LVQELKK-DYSIIIVTHN 225

Length = 271

>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 53/192 (27%), Positives = 84/192 (43%), Gaps = 45/192 (23%)

Query: 56  ISFSDASFGYPG--GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
           I F + +F YPG   P L +N+NF I     +A+VG +G GKSTI  L+        G +
Sbjct: 342 IEFRNVTFTYPGKEVPAL-RNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEI 400

Query: 114 F-----------RSAKVRIAVFSQH-HVDGLDLSSN------------------PLLYMM 143
                        S + ++A+ SQ+ H+    +++N                   + Y M
Sbjct: 401 LLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAM 460

Query: 144 RCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN 203
             F    +  L   +G  GV           LSGGQ+ R+A A+   +   I++LDE ++
Sbjct: 461 D-FINKMDNGLDTVIGENGV----------LLSGGQRQRIAIARALLRDSPILILDEATS 509

Query: 204 HLDLDAVEALIQ 215
            LD ++ E  IQ
Sbjct: 510 ALDTES-ERAIQ 520

Length = 582

>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 51/197 (25%), Positives = 75/197 (38%), Gaps = 63/197 (31%)

Query: 45  PTPDDRPGPPIISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKL 101
           P P   PG P IS  +  F +      P L  N+N  + + S +A+VG  G GK++++  
Sbjct: 604 PNPPLEPGLPAISIKNGYFSWDSKAERPTL-SNINLDVPVGSLVAIVGSTGEGKTSLISA 662

Query: 102 IAGELQPSSGT--VFR-------------SAKVR-----------------IAVFSQHHV 129
           + GEL P S    V R             +A VR                 I V +  H 
Sbjct: 663 MLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQH- 721

Query: 130 DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT 189
              DL            PG    +    +G  GV           +SGGQK RV+ A+  
Sbjct: 722 ---DLDL---------LPGGDLTE----IGERGV----------NISGGQKQRVSMARAV 755

Query: 190 FKKPHIILLDEPSNHLD 206
           +    + + D+P + LD
Sbjct: 756 YSNSDVYIFDDPLSALD 772

Length = 1622

>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 5/73 (6%)

Query: 170 QPMYTLSGGQKSRVAFAKITFKKPH--IILLDEPSNHLDLDAVEAL---IQGLVLFQGGI 224
           Q + TLSGG+  RV  A   F +P   + +LDEPS  L    +  L   I+GL+     +
Sbjct: 83  QKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTV 142

Query: 225 LMVSHDEHLISGS 237
           +++ H+  ++S +
Sbjct: 143 ILIEHNLDVLSSA 155

Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176

>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 47.1 bits (112), Expect = 2e-06
 Identities = 46/174 (26%), Positives = 74/174 (42%), Gaps = 40/174 (22%)

Query: 70  ILFKNLN---------FGIDLDSR----IAMVGPNGIGKSTILKLIAGELQPSSGTV--- 113
           I    +N         F I LD      + ++GP+G GKS++L+++     P SGT+   
Sbjct: 3   IQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIA 62

Query: 114 -----FRSAKVRIA----------VFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAH 157
                F       A          VF Q+++   L +  N +    R   G+ + +  A 
Sbjct: 63  GNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVL-GLSKDQALAR 121

Query: 158 LGSFGVTGNLALQPM-----YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 206
             +  +   L L+P        LSGGQ+ RVA A+    +P ++L DEP+  LD
Sbjct: 122 --AEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALD 173

Length = 242

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 47.6 bits (114), Expect = 3e-06
 Identities = 17/72 (23%), Positives = 37/72 (51%)

Query: 55  IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
           I + +  S   P    + K+++      ++I ++G NG GKST+L+++AG  +  +G   
Sbjct: 4   IYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEAR 63

Query: 115 RSAKVRIAVFSQ 126
            +  +++    Q
Sbjct: 64  PAPGIKVGYLPQ 75

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 47.9 bits (115), Expect = 3e-06
 Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 45/155 (29%)

Query: 85  IAMVGPNGIGKSTILKLIAGEL---------QPS--------SGTVF-------RSAKVR 120
             ++GPNGIGK+T +K+++GEL         +PS         GT          + +++
Sbjct: 102 TGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIK 161

Query: 121 IAVFSQHHVDGLDLSSNPLLYMMRCFPG--------VPEQ-KLRAHLGSFGVTGNLALQP 171
           +    Q+ VD           + + F G        V E+ KL   +   G+  N+  + 
Sbjct: 162 VVHKPQY-VD----------LIPKVFKGKVRELLKKVDERGKLDEVVERLGLE-NILDRD 209

Query: 172 MYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 206
           +  LSGG+  RVA A    +       DEP+++LD
Sbjct: 210 ISELSGGELQRVAIAAALLRDADFYFFDEPTSYLD 244

Length = 590

>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 53/193 (27%), Positives = 80/193 (41%), Gaps = 33/193 (17%)

Query: 45  PTPDD-------RPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKST 97
           P PD+           P I  ++    Y   PIL  NL++ ++      +VGPNG GKST
Sbjct: 243 PEPDEPSARHALPANEPRIVLNNGVVSYNDRPIL-HNLSWQVNPGEHWQIVGPNGAGKST 301

Query: 98  ILKLIAGE-------------LQPSSGTVFRSAKVRIA-VFSQHHVDGLDLSSNPLLYMM 143
           +L LI G+              +  SG      K  I  V S  H+D   +S++    ++
Sbjct: 302 LLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLD-YRVSTSVRNVIL 360

Query: 144 RCF-------PGVPE-QKLRAH--LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP 193
             F         V + Q+  A   L   G+    A  P ++LS GQ+      +   K P
Sbjct: 361 SGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHP 420

Query: 194 HIILLDEPSNHLD 206
            +++LDEP   LD
Sbjct: 421 TLLILDEPLQGLD 433

Length = 490

>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 3/48 (6%)

Query: 173 YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA---VEALIQGL 217
             LSGGQ+ R+  A+    +P ++LLDEP++ LD  A   +E LIQ L
Sbjct: 143 LGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQEL 190

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247

>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP)

 Score = 47.6 bits (113), Expect = 3e-06
 Identities = 45/170 (26%), Positives = 69/170 (40%), Gaps = 26/170 (15%)

Query: 56  ISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
           I+  +A+F +    P     + F I   + +A+VG  G GKS++L  +  E+    G V 
Sbjct: 637 ITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVH 696

Query: 115 RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVP--EQKLRAHLGSFGVTGNLALQPM 172
               V   V  Q  +    L  N L        G    E+  +  L +  +  +L + P 
Sbjct: 697 MKGSVAY-VPQQAWIQNDSLRENILF-------GKALNEKYYQQVLEACALLPDLEILPS 748

Query: 173 ----------YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEA 212
                       LSGGQK RV+ A+  +    I L D+P     L AV+A
Sbjct: 749 GDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDP-----LSAVDA 793

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522

>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 35/159 (22%), Positives = 70/159 (44%), Gaps = 26/159 (16%)

Query: 70  ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS---SGTV-FRSAKVRIAVFS 125
            +  +++  ++    +A++G +G GK+T+L  I+G ++     SG + F     +   F 
Sbjct: 21  RILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQ 80

Query: 126 QH--HVDGLD-----------LSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQP- 171
           +   +V   D           L+   +L + R       +K    +       +LAL   
Sbjct: 81  KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLL----RDLALTRI 136

Query: 172 ----MYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 206
               +  +SGG++ RV+ A      P +++LDEP++ LD
Sbjct: 137 GGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLD 175

The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 47.7 bits (113), Expect = 4e-06
 Identities = 48/189 (25%), Positives = 81/189 (42%), Gaps = 25/189 (13%)

Query: 86   AMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHH--------VDGLD--LS 135
             ++G NG GK+T  K++ G+   +SG    + K  +   S  H         D +D  L+
Sbjct: 1969 GLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLT 2028

Query: 136  SNPLLYMMRCFPGVPEQKLRA----HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK 191
                LY+     GVP +++       + S G++   A +   T SGG K +++ A     
Sbjct: 2029 GREHLYLYARLRGVPAEEIEKVANWSIQSLGLS-LYADRLAGTYSGGNKRKLSTAIALIG 2087

Query: 192  KPHIILLDEPSNHLDLDAVEAL---IQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGK 248
             P ++LLDEP+  +D  A   L   I  ++     +++ SH       S+EE   +    
Sbjct: 2088 CPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSH-------SMEECEALCTRL 2140

Query: 249  ATPFHGTFH 257
            A    G F 
Sbjct: 2141 AIMVKGAFQ 2149

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 46.4 bits (110), Expect = 4e-06
 Identities = 48/175 (27%), Positives = 79/175 (45%), Gaps = 31/175 (17%)

Query: 72  FKNLNFGIDLDSRIAMVGPNGIGKSTILKL------------IAGELQPSSGTVFRS--- 116
            K++N  I      A++GP+G GKST+L+             I G+L      ++ +   
Sbjct: 19  LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78

Query: 117 AKVRIAV---FSQHHVDGLDLSSNPLLYMMRC--------FPGVPEQKLRAHLGSFGVTG 165
           A +RI V   F + +   + +  N + Y +R            V E+ LR       V  
Sbjct: 79  ADLRIKVGMVFQKPNPFPMSIYEN-VAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKD 137

Query: 166 NLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA---VEALIQGL 217
            L     + LSGGQ+ R+  A+    +P +IL+DEP++ LD  A   +E L++ L
Sbjct: 138 RLK-SHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEEL 191

Length = 249

>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional

 Score = 46.6 bits (111), Expect = 4e-06
 Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 3/61 (4%)

Query: 173 YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV-LFQGG--ILMVSH 229
           + LSGGQK RVA A I   +P  ++ DEP+  LD   V+ +++    L + G  I++V+H
Sbjct: 164 FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTH 223

Query: 230 D 230
           D
Sbjct: 224 D 224

Length = 305

>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional

 Score = 47.2 bits (112), Expect = 4e-06
 Identities = 55/237 (23%), Positives = 103/237 (43%), Gaps = 47/237 (19%)

Query: 73  KNLNFGIDLDSRIAMVGPNGIGKS----TILKLI---AGELQPSSGTVFRSAKVRIAVFS 125
           +NL+F +     +A+VG +G GKS     +++L+    G +Q     + R ++  I +  
Sbjct: 33  RNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSE 92

Query: 126 Q-----HHVDGLDLS---SNPLLYMMRCFPGVPEQ---KLRAHLGSFGVTGNLALQPM-- 172
           Q      HV G D++     P+  +   F  V EQ    +R H G+      +  + M  
Sbjct: 93  QSAAQMRHVRGADMAMIFQEPMTSLNPVFT-VGEQIAESIRLHQGASREEAMVEAKRMLD 151

Query: 173 ---------------YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL 217
                          + LSGG + RV  A     +P +++ DEP+  LD+     ++Q +
Sbjct: 152 QVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLI 211

Query: 218 VLFQG----GILMVSHDEHLISGSVEELWVVSEGKATP-------FHGTFHDYKKML 263
            + Q     G++ ++HD  +++   + + V+ +G+A         FH   H Y + L
Sbjct: 212 KVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQIFHAPQHPYTRAL 268

Length = 623

>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional

 Score = 46.6 bits (111), Expect = 4e-06
 Identities = 49/219 (22%), Positives = 92/219 (42%), Gaps = 45/219 (20%)

Query: 85  IAMVGPNGIGKSTILKLIAGELQPSSGTVF----------RSAK------VRI------- 121
           +A++G +G GKST+ +L+ G   PS G V           R+ +      +++       
Sbjct: 41  VALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSIS 100

Query: 122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKS 181
           AV  +  V   ++   PL +++         +    L +  +  ++  +    LSGGQ  
Sbjct: 101 AVNPRKTVR--EIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQ 158

Query: 182 RVAFAKITFKKPHIILLDEPSNHLDL-------DAVEALIQGLVLFQGGI--LMVSHDEH 232
           RV  A+    +P +++LDE  ++LDL         ++ L Q     Q G   L ++HD  
Sbjct: 159 RVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQ-----QFGTACLFITHDLR 213

Query: 233 LISGSVEELWVVSEGK-----ATPFHGTF-HDYKKMLQS 265
           L+    + + V+  G+           TF     ++LQ+
Sbjct: 214 LVERFCQRVMVMDNGQIVETQPVGDKLTFSSPAGRVLQN 252

Length = 268

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 46.8 bits (112), Expect = 5e-06
 Identities = 54/260 (20%), Positives = 94/260 (36%), Gaps = 73/260 (28%)

Query: 62  SFGYPGGPI-LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG----ELQPSSGTVF-- 114
            F   GG +   ++++F ++    + +VG +G GKST+   + G      + +SG V   
Sbjct: 14  EFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILD 73

Query: 115 ----------RSAKVR---IAVFSQHHVDGLDLSSNPLLY-------MMRCFPGVPEQKL 154
                        K+R   IA+  Q  +  L    NP++         +R        + 
Sbjct: 74  GRDLLGLSEREMRKLRGKRIAMIFQDPMTSL----NPVMTIGDQIREALRLHGKGSRAEA 129

Query: 155 RAHLGS-FGVTG--NLALQPMYT--LSGGQKSRVAFAKITFKKPHIILLDEPSNHLD--- 206
           R          G  +   +  Y   LSGG + RV  A     KP +++ DEP+  LD   
Sbjct: 130 RKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTT 189

Query: 207 ----LDAVEALIQGLVLFQGGILMVSHDEHLIS-----------------GSVEELWVVS 245
               LD ++ L + L      +L ++HD  +++                 G  EE+    
Sbjct: 190 QAQILDLLKDLQREL---GMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEI---- 242

Query: 246 EGKATPFHGTFHDYKKMLQS 265
                      H Y + L +
Sbjct: 243 ------LSNPQHPYTRGLLA 256

Length = 539

>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional

 Score = 46.4 bits (110), Expect = 5e-06
 Identities = 64/213 (30%), Positives = 89/213 (41%), Gaps = 60/213 (28%)

Query: 60  DASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV 119
           DASF  PGG I               A+VG NG GKST+ K + G ++ +SG        
Sbjct: 25  DASFTVPGGSI--------------AALVGVNGSGKSTLFKALMGFVRLASG-------- 62

Query: 120 RIAVFSQHHVDGLDLSSNPLLYMMRC------FPGVPEQKLRAHLGSFG----------- 162
           +I++  Q     L    N + Y+ +       FP + E  +   +G +G           
Sbjct: 63  KISILGQPTRQAL--QKNLVAYVPQSEEVDWSFPVLVEDVVM--MGRYGHMGWLRRAKKR 118

Query: 163 ----VTGNLALQPMY--------TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAV 210
               VT  LA   M          LSGGQK RV  A+   ++  +ILLDEP   +D+   
Sbjct: 119 DRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKT- 177

Query: 211 EALIQGLV--LFQGGILMVSHDEHLISGSVEEL 241
           EA I  L+  L   G  M+    +L  GSV E 
Sbjct: 178 EARIISLLRELRDEGKTMLVSTHNL--GSVTEF 208

Length = 272

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 63/276 (22%), Positives = 96/276 (34%), Gaps = 72/276 (26%)

Query: 45  PTPDDRPGPPIISFSDASFGYPGGPILFKNLNF------GIDLDSR----IAMVGPNGIG 94
           P P     P ++   D    +P      +          GI L  R    + +VG +G G
Sbjct: 266 PPPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSG 325

Query: 95  KSTILKLIAGELQPSSGTVF--------------RSAKVRIAVFSQH------------- 127
           KST+   +   L PS G +               R  + R+ V  Q              
Sbjct: 326 KSTLGLALLR-LIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQ 384

Query: 128 ------HVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKS 181
                  V    LS               +Q++   L   G+      +  +  SGGQ+ 
Sbjct: 385 IIEEGLRVHEPKLS-----------AAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQ 433

Query: 182 RVAFAKITFKKPHIILLDEPSNHLD-------LDAVEALIQGLVLFQGGILMVSHDEHLI 234
           R+A A+    KP +ILLDEP++ LD       LD +  L Q   L     L +SHD  ++
Sbjct: 434 RIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGL---SYLFISHDLAVV 490

Query: 235 SGSVEELWVVSEGK-------ATPFHGTFHDYKKML 263
                 + V+ +GK          F    H+Y + L
Sbjct: 491 RALCHRVIVMRDGKIVEQGPTEAVFANPQHEYTRAL 526

Length = 534

>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score = 47.0 bits (112), Expect = 5e-06
 Identities = 59/236 (25%), Positives = 95/236 (40%), Gaps = 52/236 (22%)

Query: 16  SLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRP-GPPIISFSDASFGYPGGPILFKN 74
           S++Q  + A ER   V E+++ P  ++     DDRP     I   + SF Y    ++ +N
Sbjct: 306 SMLQQAVVAGER---VFELMDGPRQQY---GNDDRPLQSGRIDIDNVSFAYRDDNLVLQN 359

Query: 75  LNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF-----------RSAKVRIAV 123
           +N  +     +A+VG  G GKST+  L+ G    + G +               +  +A+
Sbjct: 360 INLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAM 419

Query: 124 FSQHHVD-----------GLDLSSN---------PLLYMMRCFPGVPEQKLRAHLGSFGV 163
             Q  V            G D+S            L  + R  P      L   LG    
Sbjct: 420 VQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPD----GLYTPLGE--- 472

Query: 164 TGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL 219
            GN        LS GQK  +A A++  + P I++LDE + ++D    +A+ Q L  
Sbjct: 473 QGN-------NLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAA 521

Length = 592

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 47.0 bits (112), Expect = 5e-06
 Identities = 67/250 (26%), Positives = 105/250 (42%), Gaps = 57/250 (22%)

Query: 45  PTPDDRPGPPIISFSDASFGYPGGPILF----------KNLNFGIDLDSRIAMVGPNGIG 94
           P P   P  P++        +P    +           KN++F +     + +VG +G G
Sbjct: 265 PVPLPEPASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSG 324

Query: 95  KST----ILKLIA--GEL----QPSSGTVFRS---AKVRIAVFSQHHVDGLDLSSNPLLY 141
           KST    +L+LI   GE+    QP      R     + RI V  Q     L    NP L 
Sbjct: 325 KSTTGLALLRLINSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSL----NPRLN 380

Query: 142 MMRCFPGVPEQKLRAHLGSFG----------VTGNLALQP----MY--TLSGGQKSRVAF 185
           +++    + E+ LR H  +            V   + L P     Y    SGGQ+ R+A 
Sbjct: 381 VLQ----IIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAI 436

Query: 186 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQG-------GILMVSHDEHLISGSV 238
           A+    KP +I+LDEP++ LD   V+A I  L L +          L +SHD H++    
Sbjct: 437 ARALILKPSLIILDEPTSSLD-KTVQAQI--LALLKSLQQKHQLAYLFISHDLHVVRALC 493

Query: 239 EELWVVSEGK 248
            ++ V+ +G+
Sbjct: 494 HQVIVLRQGE 503

Length = 529

>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR)

 Score = 47.2 bits (112), Expect = 6e-06
 Identities = 44/173 (25%), Positives = 69/173 (39%), Gaps = 50/173 (28%)

Query: 67   GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIA-VFS 125
             G  + ++L+F ++   R+ ++G  G GKST+L                SA +R+     
Sbjct: 1230 AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLL----------------SALLRLLSTEG 1273

Query: 126  QHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSF----------------GVTGNLAL 169
            +  +DG+  +S  L    + F GV  QK+    G+F                 V   + L
Sbjct: 1274 EIQIDGVSWNSVTLQTWRKAF-GVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGL 1332

Query: 170  QPM----------------YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 206
            + +                Y LS G K  +  A+    K  I+LLDEPS HLD
Sbjct: 1333 KSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLD 1385

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490

>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C

 Score = 45.5 bits (109), Expect = 6e-06
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 12/70 (17%)

Query: 174 TLSGGQKSRVAFAKITFKKPHIILLDEP--------SNHLDLDAVEALIQGLVLFQGGIL 225
            LSGGQK R++ A+  +    I LLD+P          H+     E  I GL+L     +
Sbjct: 127 NLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHI----FENCILGLLLNNKTRI 182

Query: 226 MVSHDEHLIS 235
           +V+H   L+ 
Sbjct: 183 LVTHQLQLLP 192

This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 46.9 bits (111), Expect = 6e-06
 Identities = 63/251 (25%), Positives = 112/251 (44%), Gaps = 30/251 (11%)

Query: 23   KALERMGHVDEVVNDPDYK-------FEFPTPDDRPGPPIISFSDASFGYPGGPILFKNL 75
            +ALE+   + E + DP++        FE   P   PG  + +        P G      L
Sbjct: 892  RALEKTEPLTEEMEDPEHPEGINDSFFERELPGLVPGVCVKNL--VKIFEPSGRPAVDRL 949

Query: 76   NFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------VR--IAVFS 125
            N     +   A +G NG GK+T L ++ G L P+SGTV    K        VR  + +  
Sbjct: 950  NITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCP 1009

Query: 126  QHHV--DGLDLSSNPLLYMMRCFPGVPEQKL--RAHLGSFGVTGNLALQPMYTLSGGQKS 181
            QH++    L ++ + L Y         E +L   A L   G+      +    LSGG + 
Sbjct: 1010 QHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRN-EEAQDLSGGMQR 1068

Query: 182  RVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGG--ILMVSH--DEHLISGS 237
            +++ A        +++LDEP++ +D  +  ++   L+ ++ G  I+M +H  DE  + G 
Sbjct: 1069 KLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLG- 1127

Query: 238  VEELWVVSEGK 248
             + + ++S+G+
Sbjct: 1128 -DRIAIISQGR 1137

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional

 Score = 46.3 bits (111), Expect = 6e-06
 Identities = 52/200 (26%), Positives = 75/200 (37%), Gaps = 85/200 (42%)

Query: 51  PGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSS 110
            G  I + ++ S   P G I      FG+        +G +G GKST+++ I    +P+S
Sbjct: 14  GGRTIHALNNVSLHIPAGEI------FGV--------IGASGAGKSTLIRCINLLERPTS 59

Query: 111 GTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRA----------H--- 157
           G V               VDG DL++            + E++LR           H   
Sbjct: 60  GRVL--------------VDGQDLTA------------LSEKELRKARRQIGMIFQHFNL 93

Query: 158 LGSFGVTGNLALQPM-----------------------------Y--TLSGGQKSRVAFA 186
           L S  V  N+AL P+                             Y   LSGGQK RVA A
Sbjct: 94  LSSRTVFDNVAL-PLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIA 152

Query: 187 KITFKKPHIILLDEPSNHLD 206
           +     P ++L DE ++ LD
Sbjct: 153 RALASNPKVLLCDEATSALD 172

Length = 343

>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed

 Score = 46.7 bits (112), Expect = 7e-06
 Identities = 15/62 (24%), Positives = 32/62 (51%)

Query: 65  YPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVF 124
            P    + K+++      ++I ++G NG GKST+L+++AG  +   G    +  +++   
Sbjct: 16  VPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYL 75

Query: 125 SQ 126
            Q
Sbjct: 76  PQ 77

Length = 556

>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional

 Score = 46.4 bits (110), Expect = 7e-06
 Identities = 51/189 (26%), Positives = 92/189 (48%), Gaps = 26/189 (13%)

Query: 85  IAMVGPNGIGKSTILKLIAGELQPSS--GTVFRSAKV-------RIAVFSQHHVDGLDLS 135
           +A++GP+G GKST+L  +AG +Q ++  GT+  + +        R    +Q  +    L+
Sbjct: 97  LAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLT 156

Query: 136 SNPLLY---MMRCFPGVPEQ-KLRAH---LGSFGVT--GNLALQPMYT--LSGGQKSRVA 184
               L    ++R    + +Q K+      +   G+T   N  +   +   +SGG++ RV+
Sbjct: 157 VRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVS 216

Query: 185 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV-LFQGGILMVSHDEHLISGSVEELW- 242
            A      P +++LDEP++ LD  A   L+  L  L Q G  +V+   H  S  V +++ 
Sbjct: 217 IAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVT-SMHQPSSRVYQMFD 275

Query: 243 ---VVSEGK 248
              V+SEG+
Sbjct: 276 SVLVLSEGR 284

Length = 659

>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional

 Score = 45.5 bits (108), Expect = 7e-06
 Identities = 54/175 (30%), Positives = 80/175 (45%), Gaps = 30/175 (17%)

Query: 85  IAMVGPNGIGKSTILKLIAGELQPSSGTVF------------RSAKVRIA----VF-SQH 127
           IA++G +G GKST+L ++AG    SSG V               AK+R      VF S  
Sbjct: 39  IALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFM 98

Query: 128 HVDGLDLSSN-PLLYMMRCFPGVPEQKLRAH----LGSFGVTGNLALQPMYTLSGGQKSR 182
            +  L+   N  L  ++R   G   ++ R      L   G+   L   P   LSGG++ R
Sbjct: 99  LIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHLPA-QLSGGEQQR 154

Query: 183 VAFAKITFKKPHIILLDEPSNHLDL---DAVEALIQGLVLFQGGIL-MVSHDEHL 233
           VA A+    +P ++  DEP+ +LD    D +  L+  L    G  L +V+HD  L
Sbjct: 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQL 209

Length = 228

>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 45.8 bits (108), Expect = 7e-06
 Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 4/65 (6%)

Query: 175 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA---VEALIQGLVL-FQGGILMVSHD 230
           LSGGQ+ R+  A+    KP ++L+DEP   LD  A   VE+LIQ L L  +  +++VSH+
Sbjct: 151 LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHN 210

Query: 231 EHLIS 235
            H +S
Sbjct: 211 LHQVS 215

Length = 261

>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 45.3 bits (107), Expect = 9e-06
 Identities = 44/179 (24%), Positives = 71/179 (39%), Gaps = 47/179 (26%)

Query: 54  PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
            ++SF   S  Y G       ++  I+    + ++G NG GK+T+L  + G+ + +SG +
Sbjct: 4   VMLSFDKVSAHY-GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRI 62

Query: 114 FRSAKVRIAVFSQHHVDGLDLSSNPLLYMMR-CFPGVPEQKLRAHLGSFGVTGNLAL--- 169
                    VF     DG D++      +MR     VPE   R       V  NLA+   
Sbjct: 63  ---------VF-----DGKDITDWQTAKIMREAVAIVPEG--RRVFSRMTVEENLAMGGF 106

Query: 170 --------------------------QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS 202
                                     Q   T+SGG++  +A  +    +P ++LLDEPS
Sbjct: 107 FAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPS 165

Length = 237

>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 51/197 (25%), Positives = 85/197 (43%), Gaps = 34/197 (17%)

Query: 69  PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE--LQPSSGTV-FRSAKV------ 119
            IL K +N  +      A++GPNG GKST+ K IAG    + +SGT+ F+   +      
Sbjct: 14  EIL-KGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPD 72

Query: 120 ---RIAVF--SQHHVDGLDLSSNPLLY----MMRCFPGVPEQKLRAHLGSFGVTGNLALQ 170
              R  +F   Q+  +   +S+   L       R   G     L   L        LAL 
Sbjct: 73  ERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLL--KAKLALL 130

Query: 171 PM----------YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF 220
            M             SGG+K R    ++   +P + +LDE  + LD+DA++ + +G+   
Sbjct: 131 GMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRL 190

Query: 221 QG---GILMVSHDEHLI 234
           +      L+++H + L+
Sbjct: 191 REPDRSFLIITHYQRLL 207

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243

>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 44.9 bits (106), Expect = 1e-05
 Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 4/64 (6%)

Query: 170 QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA---VEALIQGLVLFQGGILM 226
           +P   LSGGQ+ R+  A+    +P +ILLDEP++ LD  A   +E L++ L      I++
Sbjct: 142 KPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENY-TIVI 200

Query: 227 VSHD 230
           V+H+
Sbjct: 201 VTHN 204

Length = 250

>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 45.0 bits (106), Expect = 1e-05
 Identities = 58/215 (26%), Positives = 93/215 (43%), Gaps = 43/215 (20%)

Query: 53  PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLI--AGELQPSS 110
             ++S  D +  Y G     KN+N  +   +  A++GP+G GK+T L+ I    +L P +
Sbjct: 2   TLLLSAQDVNIYY-GDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGA 60

Query: 111 ---------------------------GTVFRSAKV--RIAVFSQHHVDGLDLSS-NPLL 140
                                      G VF+       ++VF  + V GL L+      
Sbjct: 61  RVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFD-NVVAGLKLAGIRDRD 119

Query: 141 YMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE 200
           ++M     V E+ LR       V   L   P   LSGGQ+ R+  A+    +P I+L+DE
Sbjct: 120 HLME----VAERSLRGAALWDEVKDRLK-TPATGLSGGQQQRLCIARALAVEPEILLMDE 174

Query: 201 PSNHLDLDAVEALIQGLVL---FQGGILMVSHDEH 232
           P++ LD  A  A I+ L+        I++V+H+ H
Sbjct: 175 PTSALD-PASTARIEDLMTDLKKVTTIIIVTHNMH 208

Length = 252

>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional

 Score = 44.6 bits (105), Expect = 2e-05
 Identities = 36/155 (23%), Positives = 66/155 (42%), Gaps = 29/155 (18%)

Query: 85  IAMVGPNGIGKSTILKLIAGELQPSSGTV------------------------FRSAKVR 120
           I+++G +G GKST L+ I    +PS G++                         R  + R
Sbjct: 34  ISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTR 93

Query: 121 IAVFSQH-----HVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTL 175
           + +  QH     H+  L+      + ++        ++   +L   G+      +    L
Sbjct: 94  LTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHL 153

Query: 176 SGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAV 210
           SGGQ+ RV+ A+    +P ++L DEP++ LD + V
Sbjct: 154 SGGQQQRVSIARALAMEPEVLLFDEPTSALDPELV 188

Length = 257

>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 7/76 (9%)

Query: 45  PTPDDRPGPP-------IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKST 97
           P   D PG          + F D SF Y       ++++F       +A+VGP G GKST
Sbjct: 317 PDVRDPPGAIDLGRVKGAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKST 376

Query: 98  ILKLIAGELQPSSGTV 113
           ++ L+     P SG +
Sbjct: 377 LINLLQRVFDPQSGRI 392

Length = 588

>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 20/41 (48%), Positives = 26/41 (63%)

Query: 175 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ 215
           LSGGQK RVA A     +P II+LDE ++ LD +    LI+
Sbjct: 141 LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIK 181

Length = 279

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 50/203 (24%), Positives = 91/203 (44%), Gaps = 30/203 (14%)

Query: 54  PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
           P IS +     +     L K++N  +      A++G NG GKST++K+++G  +P+ GT+
Sbjct: 4   PYISMAGIGKSFGPVHAL-KSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTI 62

Query: 114 F------------RSAKVRIAVFSQHH--VDGLDLSSNPLLYMMRC----FPGVP----- 150
                         +A++ I +  Q    +D L +  N  LY+ R       GV      
Sbjct: 63  TINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLEN--LYIGRHLTKKVCGVNIIDWR 120

Query: 151 EQKLRAHLGSFGVTGNLAL-QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHL---D 206
           E ++RA +    V   + L + +  LS   K  +  AK       +I++DEP++ L   +
Sbjct: 121 EMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKE 180

Query: 207 LDAVEALIQGLVLFQGGILMVSH 229
           +D +  ++  L      I+ +SH
Sbjct: 181 VDYLFLIMNQLRKEGTAIVYISH 203

Length = 510

>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 43.9 bits (103), Expect = 3e-05
 Identities = 47/177 (26%), Positives = 76/177 (42%), Gaps = 34/177 (19%)

Query: 72  FKNLNFGIDLDSRIAMVGPNGIGKSTILKLI--AGELQPSSGTVFRSAKVRI---AVFSQ 126
            K ++  I+  S +A +GP+G GKST L+L     +L P++       ++RI    ++ +
Sbjct: 19  LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRL---EGEIRIDGRNIYDK 75

Query: 127 H-HVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGN-------------LAL--- 169
              VD L  +   +      FP    + +   L   GV  N              AL   
Sbjct: 76  GVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDE 135

Query: 170 ------QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD---LDAVEALIQGL 217
                 +  + LSGGQ+ R+  A+     P ++L+DEP++ LD      VE LI  L
Sbjct: 136 VKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHEL 192

Length = 250

>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 47/170 (27%), Positives = 75/170 (44%), Gaps = 20/170 (11%)

Query: 55  IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
           +I F + S  +    +L  N++  ID    + ++GP+G GKST+L+ I    + +SG + 
Sbjct: 1   MIEFKNVSKHFGPTQVL-HNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLI 59

Query: 115 --------RSAKVRI------AVFSQH----HVDGLDLSSNPLLYMMRCFPGVPEQKLRA 156
                        R+       VF Q     H+  L+      L +        E++ R 
Sbjct: 60  VDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARE 119

Query: 157 HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 206
            L   G+       P   LSGGQ+ RVA A+    KP ++L DEP++ LD
Sbjct: 120 LLAKVGLAERAHHYPS-ELSGGQQQRVAIARALAVKPKLMLFDEPTSALD 168

Length = 240

>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional

 Score = 44.0 bits (104), Expect = 3e-05
 Identities = 52/213 (24%), Positives = 87/213 (40%), Gaps = 39/213 (18%)

Query: 49  DRPGPPIISFS--DASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL 106
           +       +F+  + SF  PG   L   L+          ++G NG GKST+LK++    
Sbjct: 3   EYTNHSDTTFALRNVSFRVPG-RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQ 61

Query: 107 QPSSGTVFRSAKV-----------RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLR 155
            PS G +   A+            ++A   Q       ++   L+ + R +P        
Sbjct: 62  PPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGR-YP------WH 114

Query: 156 AHLGSFGVTGN---------LALQPMY-----TLSGGQKSRVAFAKITFKKPHIILLDEP 201
             LG FG             + L+P+      +LSGG++ R   A +  +    +LLDEP
Sbjct: 115 GALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEP 174

Query: 202 SNHLDLD---AVEALIQGLVLFQG-GILMVSHD 230
           ++ LD+     V AL+  L   +G  ++ V HD
Sbjct: 175 TSALDIAHQVDVLALVHRLSQERGLTVIAVLHD 207

Length = 265

>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 43.8 bits (103), Expect = 3e-05
 Identities = 54/198 (27%), Positives = 88/198 (44%), Gaps = 35/198 (17%)

Query: 65  YPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLI------------AGE--LQPSS 110
           Y GG    KN+N  +      A++GP+G GKST L+               GE  L P +
Sbjct: 25  YYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDN 84

Query: 111 GTVFR------SAKVRIA-VFSQHHVDGLDLSSNPLLYMMRCFPGVP-----EQKLRAHL 158
             +          ++RI+ VF + +     +  N + Y +R   GV      E+++   L
Sbjct: 85  VNILSPEVDPIEVRMRISMVFQKPNPFPKSIFEN-VAYGLR-IRGVKRRSILEERVENAL 142

Query: 159 GSFGVTGNLA---LQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA---VEA 212
            +  +   +        + LSGGQ+ R+  A+     P I+L DEP++ LD  A   +E 
Sbjct: 143 RNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEE 202

Query: 213 LIQGLVLFQGGILMVSHD 230
           LI  L   +  IL+V+H+
Sbjct: 203 LISDLK-NKVTILIVTHN 219

Length = 265

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 44.2 bits (104), Expect = 5e-05
 Identities = 20/42 (47%), Positives = 31/42 (73%), Gaps = 1/42 (2%)

Query: 174  TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ 215
            +LSGGQK R+A A+   ++P I+LLDE ++ LD ++ E LI+
Sbjct: 1358 SLSGGQKQRIAIARALLREPKILLLDEATSSLDSNS-EKLIE 1398

Length = 1466

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 65/262 (24%), Positives = 103/262 (39%), Gaps = 61/262 (23%)

Query: 54  PIISFSDAS--FGYPGGPI-LFKNLNFGIDLDSRIAMVGPNGIGKS----TILKLIAGEL 106
           P++S  + S  F   GG +   K ++F I+    +A+VG +G GKS    +IL L+    
Sbjct: 5   PLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLL---- 60

Query: 107 QPSSGTVFRSAKVR-----IAVFSQ---HHVDGLDL---------SSNPLLYM------- 142
            PS      S  +      +   S+     V G  +         S NPL  +       
Sbjct: 61  -PSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEV 119

Query: 143 MRCFPGVPEQKLRA-------HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI 195
           +R   G+     RA        +G       L   P + LSGGQ+ RV  A     +P +
Sbjct: 120 LRLHRGLSRAAARARALELLELVGIPEPEKRLDAYP-HELSGGQRQRVMIAMALANEPDL 178

Query: 196 ILLDEPSNHLDLDAVEALIQGLVLFQG-------GILMVSHDEHLISGSVEELWVVSEGK 248
           ++ DEP+  LD   V    Q L L +         IL ++HD  ++    + ++V+  G+
Sbjct: 179 LIADEPTTALD---VTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGE 235

Query: 249 -------ATPFHGTFHDYKKML 263
                   T F    H Y + L
Sbjct: 236 IVETGTTETLFAAPQHPYTRKL 257

Length = 534

>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 43.0 bits (101), Expect = 6e-05
 Identities = 51/201 (25%), Positives = 81/201 (40%), Gaps = 55/201 (27%)

Query: 71  LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFS---QH 127
           + KN+N  I  +S  A++GP+G GKST ++           T+ R   + I  F      
Sbjct: 18  ILKNVNLDIPKNSVTALIGPSGCGKSTFIR-----------TLNRMNDL-IPGFRHEGHI 65

Query: 128 HVDGLDL-------------------SSNP--------LLYMMRC--------FPGVPEQ 152
           ++DG+D+                     NP        + Y +R              E+
Sbjct: 66  YLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEE 125

Query: 153 KLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD---LDA 209
            L+A      V   L    +  LSGGQ+ R+  A+     P +IL+DEP + LD      
Sbjct: 126 SLKAAALWDEVKDKLDKSAL-GLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTK 184

Query: 210 VEALIQGLVLFQGGILMVSHD 230
           +E LI  L      I++V+H+
Sbjct: 185 IEDLIHKLKE-DYTIVIVTHN 204

Length = 250

>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 4/61 (6%)

Query: 175 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQG--GI--LMVSHD 230
           LSGGQ+ RVA A+     P ++LLDEP + LD    E L   +   Q   G+  +MV+HD
Sbjct: 135 LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHD 194

Query: 231 E 231
           +
Sbjct: 195 Q 195

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353

>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

 Score = 43.0 bits (102), Expect = 6e-05
 Identities = 19/62 (30%), Positives = 38/62 (61%), Gaps = 3/62 (4%)

Query: 175 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQG---GILMVSHDE 231
            SGG+K R    ++   +P + +LDEP + LD+DA++ + +G+   +    G+L+++H +
Sbjct: 145 FSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ 204

Query: 232 HL 233
            L
Sbjct: 205 RL 206

Length = 251

>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 42.4 bits (101), Expect = 6e-05
 Identities = 35/146 (23%), Positives = 66/146 (45%), Gaps = 25/146 (17%)

Query: 92  GIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPG--- 148
           G G++ + + + G   P+SG +               +DG  ++       +R   G   
Sbjct: 36  GNGQTELAEALFGLRPPASGEI--------------TLDGKPVTRRSPRDAIRA--GIAY 79

Query: 149 VPEQKLRAHL-GSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 207
           VPE + R  L     V  N+AL  +  LSGG + +V  A+   + P +++LDEP+  +D+
Sbjct: 80  VPEDRKREGLVLDLSVAENIALSSL--LSGGNQQKVVLARWLARDPRVLILDEPTRGVDV 137

Query: 208 DAVEALIQGLVLF--QG-GILMVSHD 230
            A   + + +      G  +L++S +
Sbjct: 138 GAKAEIYRLIRELADAGKAVLLISSE 163

This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182

>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 42.8 bits (100), Expect = 7e-05
 Identities = 41/150 (27%), Positives = 68/150 (45%), Gaps = 21/150 (14%)

Query: 75  LNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV-----------FRSAKVRIAV 123
           ++F I     ++++G NG GKST  +LI G  +   G V             + + +I +
Sbjct: 26  VSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGM 85

Query: 124 FSQH---HVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----ALQPMYTLS 176
             Q+      G  +  +    M     G+P +++   +    +  N+      +P   LS
Sbjct: 86  VFQNPDNQFVGATVEDDVAFGMEN--QGIPREEMIKRVDEALLAVNMLDFKTREPA-RLS 142

Query: 177 GGQKSRVAFAKITFKKPHIILLDEPSNHLD 206
           GGQK RVA A I   +P II+LDE ++ LD
Sbjct: 143 GGQKQRVAVAGIIALRPEIIILDESTSMLD 172

Length = 277

>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system

 Score = 42.6 bits (101), Expect = 8e-05
 Identities = 44/170 (25%), Positives = 70/170 (41%), Gaps = 34/170 (20%)

Query: 89  GPNGIGKSTILKLIAGELQPSSGTVF----------RSA-----KVRIAVFSQH-----H 128
           G +G GKST+L+ I   ++P+SG V           R       + +I++  Q      H
Sbjct: 57  GLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPH 116

Query: 129 VDGLDLSSNPLLYMMRCFPGVPEQKLRAH----LGSFGVTGNLALQPMYTLSGGQKSRVA 184
              L+  +  L        GVP  +        L   G+ G     P   LSGG + RV 
Sbjct: 117 RTVLENVAFGLE-----VQGVPRAEREERAAEALELVGLEGWEHKYP-DELSGGMQQRVG 170

Query: 185 FAKITFKKPHIILLDEPSNHLD----LDAVEALIQGLVLFQGGILMVSHD 230
            A+     P I+L+DE  + LD     +  + L++     Q  I+ ++HD
Sbjct: 171 LARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHD 220

This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269

>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 42.6 bits (100), Expect = 8e-05
 Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 8/61 (13%)

Query: 175 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA---VEALIQGLVLFQGG--ILMVSH 229
           LSGGQ+ R+  A+    +P I+LLDEP++ LD  A   +E LIQ L   +G   I++V+H
Sbjct: 183 LSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQEL---RGSYTIMIVTH 239

Query: 230 D 230
           +
Sbjct: 240 N 240

Length = 286

>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 42.6 bits (100), Expect = 9e-05
 Identities = 38/163 (23%), Positives = 70/163 (42%), Gaps = 31/163 (19%)

Query: 72  FKNLNFGIDLDSRIAMVGPNGIGKSTILKL------------IAGELQPSSGTVFRS--- 116
            KN+N  I  +   A++GP+G GKST +K             + GE+  +   + +    
Sbjct: 28  LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87

Query: 117 -AKVRIAV---------FSQHHVDGLDLSSNPLLYMMRC---FPGVPEQKLRAHLGSFGV 163
             ++R  +         F Q   D  +++  P ++  +       + E+ L+       V
Sbjct: 88  LVELRKNIGMVFQKGNPFPQSIFD--NVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEV 145

Query: 164 TGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 206
              L      +LSGGQ+ R+  A+     P ++L+DEP++ LD
Sbjct: 146 KDRLH-TQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALD 187

Length = 259

>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 46/237 (19%), Positives = 93/237 (39%), Gaps = 50/237 (21%)

Query: 13   KRASLVQSRIKALERMG-HVDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGY-PGGPI 70
            ++AS  ++ + ++ER+G ++D                  P    I F D    Y PG P 
Sbjct: 1191 RQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPP 1250

Query: 71   LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVD 130
            +   L+F +    ++ +VG  G GKS++L  +   ++   G +               +D
Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIM--------------ID 1296

Query: 131  GLDLSSNPLLYMMRCFPGVPEQKL--------------------------RAHL------ 158
              D++   L  + R    +P+  +                          RAH+      
Sbjct: 1297 DCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDR 1356

Query: 159  GSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ 215
              FG+   ++ +     S GQ+  ++ A+   ++  I++LDE +  +D+   ++LIQ
Sbjct: 1357 NPFGLDAEVS-EGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDV-RTDSLIQ 1411

Length = 1495

>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 23/60 (38%), Positives = 38/60 (63%), Gaps = 4/60 (6%)

Query: 174 TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA---VEALIQGLVLFQGGILMVSHD 230
           +LSGGQ+ R+  A+    KP ++LLDEP++ LD  +   +E LI  L   +  I++V+H+
Sbjct: 164 SLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHN 222

Length = 268

>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 42.3 bits (99), Expect = 1e-04
 Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 41/168 (24%)

Query: 72  FKNLNFGIDLDSRIAMVGPNGIGKSTILK-------LIAG-------------------- 104
             N+N  I  +S  A++GP+G GKST L+       L+ G                    
Sbjct: 23  LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82

Query: 105 --ELQPSSGTVFRSAK-VRIAVFSQHHVDGLDLSSNPLLYMM---RCFPGVPEQKLRAHL 158
             EL+   G VF++     ++++        ++S  P ++     +    + EQ L+   
Sbjct: 83  ILELRRKIGMVFQTPNPFLMSIYD-------NISYGPKIHGTKDKKKLDEIVEQSLKKSA 135

Query: 159 GSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 206
               V   L    + +LSGGQ+ R+  A+    +P++IL+DEP++ LD
Sbjct: 136 LWNEVKDKLNTNAL-SLSGGQQQRLCIARTLAIEPNVILMDEPTSALD 182

Length = 254

>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 42.3 bits (99), Expect = 1e-04
 Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 8/88 (9%)

Query: 173 YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGG----ILMVS 228
           + LSGGQK RVA A I     + ++LDEP+  LD    E  I             I+MV+
Sbjct: 149 FELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVT 208

Query: 229 HDEHLISGSVEELWVVSEGK----ATPF 252
           H+   +    +E+ V+ EGK     +PF
Sbjct: 209 HNMDQVLRIADEVIVMHEGKVISIGSPF 236

Length = 289

>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 45/189 (23%), Positives = 84/189 (44%), Gaps = 37/189 (19%)

Query: 78  GIDLDSR----IAMVGPNGIGKSTILKLI------------------------AGELQPS 109
           G+ L +     I+++G +G GKST L+ I                         G+L+P+
Sbjct: 24  GVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPA 83

Query: 110 SGTVFRSAKVRIAVFSQH-----HVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVT 164
                +  + R+ +  QH     H+  L+      ++++        ++   +L   G+ 
Sbjct: 84  DKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIA 143

Query: 165 GNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAV-EAL--IQGLVLFQ 221
                 P + LSGGQ+ RVA A+    +P ++L DEP++ LD + V E L  +Q L    
Sbjct: 144 EKADAYPAH-LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEG 202

Query: 222 GGILMVSHD 230
             +++V+H+
Sbjct: 203 RTMVVVTHE 211

Length = 256

>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 9/109 (8%)

Query: 152 QKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVE 211
           +  + +L   G+  +   +  + LSGGQK RVA A I   +P I++ DEP+  LD     
Sbjct: 154 KLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEH 213

Query: 212 ALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGK----ATPF 252
            ++Q L+L        + +++H    +    +E+ V+ +GK     TP+
Sbjct: 214 EMMQ-LILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPY 261

Length = 320

>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 42.0 bits (98), Expect = 1e-04
 Identities = 46/193 (23%), Positives = 88/193 (45%), Gaps = 32/193 (16%)

Query: 54  PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLI----------- 102
           P ++  + + G+ G  +L   ++ G    +  +++GP G GK+T L+ +           
Sbjct: 20  PAMAAVNLTLGFAGKTVL-DQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYR 78

Query: 103 -AGELQPSSGTVFRSAKV-----RIA-VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLR 155
            +G++     ++F    V     R+  +F + +   + +  N +L  +R    VP ++ R
Sbjct: 79  YSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFPMSIMDN-VLAGVRAHKLVPRKEFR 137

Query: 156 ----AHLGSFG----VTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD- 206
               A L   G    V   L+  P + LSGGQ+  +  A+     P ++LLDEP++ LD 
Sbjct: 138 GVAQARLTEVGLWDAVKDRLSDSP-FRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDP 196

Query: 207 --LDAVEALIQGL 217
              + +E  I+ L
Sbjct: 197 TTTEKIEEFIRSL 209

Length = 276

>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 45/192 (23%), Positives = 70/192 (36%), Gaps = 62/192 (32%)

Query: 56  ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115
           I  +  +  Y     LF ++         + ++GP+G GKS++L+++     P SGT+  
Sbjct: 3   IQLNGINCFYGAHQALF-DITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL-- 59

Query: 116 SAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLG----------SFGVTG 165
                IA    +H    D S  P    +R        +LR ++G             V  
Sbjct: 60  ----NIA---GNH---FDFSKTPSDKAIR--------ELRRNVGMVFQQYNLWPHLTVQQ 101

Query: 166 NLALQPMYT-------------------------------LSGGQKSRVAFAKITFKKPH 194
           NL   P                                  LSGGQ+ RVA A+    +P 
Sbjct: 102 NLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQ 161

Query: 195 IILLDEPSNHLD 206
           ++L DEP+  LD
Sbjct: 162 VLLFDEPTAALD 173

Length = 242

>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 42.0 bits (98), Expect = 2e-04
 Identities = 52/201 (25%), Positives = 84/201 (41%), Gaps = 57/201 (28%)

Query: 71  LFKNLNFGIDLDSRIAMVGPNGIGKSTILK-------LIAGELQPSS----GTVFRSAKV 119
           +  +LN  I  +   A +GP+G GKST L+       LI G          GT  RS K+
Sbjct: 97  VLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156

Query: 120 -------RIAVFSQHHVDGLDLSSNPLLYMMRCFP---------GVPEQKLRAHLGSFGV 163
                  RI +  Q           P  + M  F          G+ ++K+   +    V
Sbjct: 157 SSLELRTRIGMVFQ----------KPTPFEMSIFDNVAYGPRNNGINDRKILEKI----V 202

Query: 164 TGNLALQPMY------------TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVE 211
             +L    ++             LSGGQ+ R+  A+    +P ++L+DEP++ LD  A  
Sbjct: 203 EKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIAT- 261

Query: 212 ALIQGLVL---FQGGILMVSH 229
           A I+ L+L    +  I++V+H
Sbjct: 262 AKIEELILELKKKYSIIIVTH 282

Length = 329

>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 17/33 (51%), Positives = 24/33 (72%)

Query: 174 TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 206
           TLSGGQ+ R+  A+    KP I+L+DEP++ LD
Sbjct: 163 TLSGGQQQRLCIARAIAVKPDILLMDEPASALD 195

Length = 267

>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query: 174 TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD---LDAVEALIQGLVLFQGGILMVSHD 230
           +LSGGQ+ R+  A+    +P +IL+DEP + LD      +E L+  L   Q  I++V+H+
Sbjct: 151 SLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHN 209

Length = 264

>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 170 QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA---VEALIQGL 217
           +    LSGGQ+ R+  A+    KP ++L+DEP++ LD  +   +E LI  L
Sbjct: 145 KSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITEL 195

Length = 253

>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 16/34 (47%), Positives = 24/34 (70%)

Query: 173 YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 206
           Y+LSGGQ+ R+  A+    +P +IL+DEP + LD
Sbjct: 153 YSLSGGQQQRLCIARTIAIEPEVILMDEPCSALD 186

Length = 269

>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 6/86 (6%)

Query: 174 TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD----LDAVEALIQGLVLFQGGILMVSH 229
           +LSGG++ RV  A+     P  ILLDEP   +D    +D ++ +I+ L     G+L+  H
Sbjct: 137 SLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVID-IKRIIEHLRDSGLGVLITDH 195

Query: 230 DEHLISGSVEELWVVSEGKATPFHGT 255
           +        E  ++VS+G     HGT
Sbjct: 196 NVRETLAVCERAYIVSQGHLIA-HGT 220

Length = 241

>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 170 QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD---LDAVEALIQGL 217
           Q  Y+LSGGQ+ R+  A+    +P ++LLDEP + LD      +E LI  L
Sbjct: 152 QSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITEL 202

Length = 260

>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 11/88 (12%)

Query: 175 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV-LFQGG--ILMVSHDE 231
           LSGG++ R+AFA      P ++  DEP++ LD     +++Q L  L Q G  I+   H  
Sbjct: 167 LSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQP 226

Query: 232 HLISGSVEELW----VVSEGKATPFHGT 255
              S  + EL+    +++EG+   + G+
Sbjct: 227 ---SSELFELFDKIILMAEGR-VAYLGS 250

[Transport and binding proteins, Other]. Length = 617

>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 3/80 (3%)

Query: 174 TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA---VEALIQGLVLFQGGILMVSHD 230
           +LSGG + +V   +    +P I++LDEP+  +D+ A   +  LI  L     GI+++S +
Sbjct: 391 SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSE 450

Query: 231 EHLISGSVEELWVVSEGKAT 250
              + G  + + V+S G   
Sbjct: 451 MPELLGITDRILVMSNGLVA 470

Length = 491

>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 53/214 (24%), Positives = 79/214 (36%), Gaps = 57/214 (26%)

Query: 46  TPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKL---- 101
            P    G  +I   D +  Y G      +++  I  +   AM+GP+G GKST L+     
Sbjct: 30  DPAASSGETVIEARDLNVFY-GDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRM 88

Query: 102 --------IAGELQPSSGTVFRSA------KVRIAVFSQHHVDGLDLSSNPLLYMMRCFP 147
                   + GEL      V+ +       + RI +  Q          NP       FP
Sbjct: 89  NDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQK--------PNP-------FP 133

Query: 148 GVPEQKLRAHLGSFGVTGNL-----------AL---------QPMYTLSGGQKSRVAFAK 187
                 +   L   G  G++           AL              LSGGQ+ R+  A+
Sbjct: 134 KSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIAR 193

Query: 188 ITFKKPHIILLDEPSNHLDLDA---VEALIQGLV 218
                P +IL+DEP++ LD  A   +E LI+ L 
Sbjct: 194 AIAPDPEVILMDEPASALDPVATSKIEDLIEELA 227

Length = 285

>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 40.4 bits (94), Expect = 4e-04
 Identities = 54/210 (25%), Positives = 86/210 (40%), Gaps = 40/210 (19%)

Query: 54  PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILK-------LIAG-- 104
           P I     +F Y    +L KN+N         A++GP+G GKST+L+       +++G  
Sbjct: 3   PKIKIRGVNFFYHKHQVL-KNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGAR 61

Query: 105 --------------------ELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMR 144
                                L+   G VF+        F +   D +      L    +
Sbjct: 62  LEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNP----FPKSIFDNVAFGPRMLGTTAQ 117

Query: 145 C-FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN 203
                V E+ LR       V  NL    +  LSGGQ+ R+  A++   +P +IL+DEP +
Sbjct: 118 SRLDEVVEKSLRQAALWDEVKDNLHKSGL-ALSGGQQQRLCIARVLAIEPEVILMDEPCS 176

Query: 204 HLDLDA---VEALIQGLVLFQGGILMVSHD 230
            LD  +   +E L+Q L      I +V+H+
Sbjct: 177 ALDPVSTMRIEELMQELKQNY-TIAIVTHN 205

Length = 251

>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 6/71 (8%)

Query: 170 QPMYTLSGGQKSRVAFAKITFKK---PHIILLDEPSNHLDLDAVEAL---IQGLVLFQGG 223
           QP  TLSGG+  R+  AK   K+     + +LDEP+  L  D ++ L   +Q LV     
Sbjct: 825 QPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDKGNT 884

Query: 224 ILMVSHDEHLI 234
           ++++ H+  +I
Sbjct: 885 VVVIEHNLDVI 895

This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925

>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional

 Score = 40.9 bits (96), Expect = 5e-04
 Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 14/159 (8%)

Query: 70  ILFKNLNFGIDLDSRIAMV-GPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIA-VFSQH 127
           +L ++++  +    ++ +V G  G GKST+L+ +  + + S G V+  A+  IA V  Q 
Sbjct: 674 VLLRDVSVSV-PRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVW--AERSIAYVPQQA 730

Query: 128 HVDGLDLSSNPLLY----MMRCFPGVPEQKLRAHLGSFGVTGNLALQ---PMYTLSGGQK 180
            +    +  N L +      R    V   +L A L   G  G L  +       LSGGQK
Sbjct: 731 WIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLG--GGLETEIGEKGVNLSGGQK 788

Query: 181 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL 219
           +RV+ A+  +    + LLD+P + LD    E +++   L
Sbjct: 789 ARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFL 827

Length = 1560

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 15/80 (18%)

Query: 168 ALQPMYTLSGGQKSRVAFA-------KITFKKP-HIILLDEPSNHLDLDAVEALIQGLV- 218
            ++P+ TLSGG++   + A        +  +    ++ LDEP   LD + +E L + L  
Sbjct: 809 EVRPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEE 868

Query: 219 ----LFQGGILMVSHDEHLI 234
                 Q  I+++SH E L 
Sbjct: 869 LLSDGRQ--IIIISHVEELK 886

Length = 908

>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 39.8 bits (93), Expect = 6e-04
 Identities = 15/32 (46%), Positives = 23/32 (71%)

Query: 175 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 206
           LSGGQ+ R+  A+    KP I+L+DEP+ ++D
Sbjct: 150 LSGGQRQRLVIARALAMKPKILLMDEPTANID 181

Length = 253

>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 40.0 bits (93), Expect = 6e-04
 Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 4/59 (6%)

Query: 175 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA---VEALIQGLVLFQGGILMVSHD 230
           LSGGQ+ R+  A+    KP +IL+DEP++ LD  +   +E LI+ L   +  I++V+H+
Sbjct: 149 LSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHN 206

Length = 252

>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 39.6 bits (92), Expect = 7e-04
 Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 4/64 (6%)

Query: 170 QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD---LDAVEALIQGLVLFQGGILM 226
           Q    LSGGQ+ R+  A+    KP ++LLDEP++ LD      +E L++ L      ++M
Sbjct: 138 QNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS-HNLSMIM 196

Query: 227 VSHD 230
           V+H+
Sbjct: 197 VTHN 200

Length = 246

>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein

 Score = 40.2 bits (94), Expect = 7e-04
 Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 3/81 (3%)

Query: 171 PMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA---VEALIQGLVLFQGGILMV 227
           P+  LSGG + +   AK+    P +++LDEP+  +D+ A   +  LI  L      I++V
Sbjct: 400 PIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVV 459

Query: 228 SHDEHLISGSVEELWVVSEGK 248
           S +   + G  + + V+ EGK
Sbjct: 460 SSELAEVLGLSDRVLVIGEGK 480

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500

>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score = 40.1 bits (94), Expect = 8e-04
 Identities = 59/237 (24%), Positives = 83/237 (35%), Gaps = 91/237 (38%)

Query: 14  RASLVQSRIKALERMGHVDE--VVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPG--GP 69
           R S   SRI+A+     + E  VV D       P P+ R     +  +   F YP    P
Sbjct: 282 RGSAAYSRIRAM-----LAEAPVVKDGSE----PVPEGRG---ELDVNIRQFTYPQTDHP 329

Query: 70  ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV-FRSAKV--------- 119
            L +N+NF +     + + GP G GKST+L LI      S G + F    +         
Sbjct: 330 AL-ENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWR 388

Query: 120 -RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL-QPMYT--- 174
            R+AV SQ           P L+                  S  V  N+AL +P  T   
Sbjct: 389 SRLAVVSQ----------TPFLF------------------SDTVANNIALGRPDATQQE 420

Query: 175 -------------------------------LSGGQKSRVAFAKITFKKPHIILLDE 200
                                          LSGGQK R++ A+       I++LD+
Sbjct: 421 IEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDD 477

Length = 569

>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 16/47 (34%), Positives = 25/47 (53%)

Query: 67  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
           G  +L  N    I+   ++ +VG NG GKST+L L+  E+    G+ 
Sbjct: 12  GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSY 58

Length = 638

>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 3/92 (3%)

Query: 160 SFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA---VEALIQG 216
           +  +  N A Q   TLSGG + +V  AK     P ++++DEP+  +D+ A   +  LI+ 
Sbjct: 389 ALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRS 448

Query: 217 LVLFQGGILMVSHDEHLISGSVEELWVVSEGK 248
           +      +L +S D   I    + + V+ +G+
Sbjct: 449 IAAQNVAVLFISSDLEEIEQMADRVLVMHQGE 480

Length = 510

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 40.0 bits (93), Expect = 0.001
 Identities = 18/41 (43%), Positives = 28/41 (68%), Gaps = 1/41 (2%)

Query: 175 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ 215
           LSGGQK R++ A+   + P I++LDE ++ LD +  E L+Q
Sbjct: 580 LSGGQKQRISIARAIIRNPKILILDEATSSLD-NKSEYLVQ 619

Length = 1466

>gnl|CDD|222036 pfam13304, AAA_21, AAA domain

 Score = 39.0 bits (90), Expect = 0.001
 Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 6/67 (8%)

Query: 175 LSGGQKSRVAFAKI---TFKKPHIILLDEPSNHLDLDAVEALIQ---GLVLFQGGILMVS 228
           +S G K  +A          K  ++L+DEP N L    +  L++    L      ++  +
Sbjct: 190 ISDGTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQLIFTT 249

Query: 229 HDEHLIS 235
           H   L+ 
Sbjct: 250 HSPLLLD 256

Length = 256

>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 12/74 (16%)

Query: 170 QPMYTLSGGQKSRVAFAKITF------KKPHIILLDEPSNHLDLDAVEALIQGL--VLFQ 221
           +P+ +LSGG+  R+   K+ +      KKP + +LDEP+  L    ++ALI  L  +  Q
Sbjct: 805 RPLSSLSGGEIQRL---KLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQ 861

Query: 222 G-GILMVSHDEHLI 234
           G  ++++ H+ H++
Sbjct: 862 GHTVVIIEHNMHVV 875

Length = 1809

>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 39.2 bits (91), Expect = 0.001
 Identities = 46/186 (24%), Positives = 80/186 (43%), Gaps = 35/186 (18%)

Query: 78  GIDLDSR----IAMVGPNGIGKSTILKL------------IAGELQPSSGTVFRSAKVRI 121
           GI LD       A++GP+G GKST L+             I GE++     ++ S    +
Sbjct: 22  GISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81

Query: 122 A-------VFSQHHVDGLDLSSNPLLYMMRCFPGVPE-----QKLRAHLGSFGV---TGN 166
                   VF Q       +  N + Y ++   GV +     Q++   L    +   T +
Sbjct: 82  ELRKEVGMVFQQPTPFPFSVYDN-VAYGLK-IAGVKDKELIDQRVEESLKQAAIWKETKD 139

Query: 167 LALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGI 224
              +     SGGQ+ R+  A+    +P ++LLDEP++ LD  +   + + L+    Q   
Sbjct: 140 NLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTF 199

Query: 225 LMVSHD 230
           +MV+H+
Sbjct: 200 IMVTHN 205

Length = 251

>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 39.2 bits (91), Expect = 0.001
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 175 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 206
           LSGGQ+ R+  A+    KP +IL+DEP++ LD
Sbjct: 148 LSGGQQQRLCIARTIAVKPDVILMDEPTSALD 179

Length = 251

>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 170 QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA---VEALIQGL 217
           +P   LSGGQ+ R+  A+     P +IL+DEP + LD  A   VE LI  L
Sbjct: 159 EPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDEL 209

Length = 267

>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 19/36 (52%), Positives = 24/36 (66%), Gaps = 1/36 (2%)

Query: 69  PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG 104
            IL K LN  I+     A++GPNG GKST+ K+IAG
Sbjct: 21  EIL-KGLNLSINKGEIHAIMGPNGSGKSTLSKVIAG 55

Length = 252

>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 8/84 (9%)

Query: 172 MY--TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV-----LFQGGI 224
           MY    SGG + RV  A     +P +++ DEP+  LD+  V+A I  L+      F   I
Sbjct: 157 MYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDV-TVQAQIMTLLNELKREFNTAI 215

Query: 225 LMVSHDEHLISGSVEELWVVSEGK 248
           +M++HD  +++G  +++ V+  G+
Sbjct: 216 IMITHDLGVVAGICDKVLVMYAGR 239

Length = 330

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 39.0 bits (92), Expect = 0.002
 Identities = 51/246 (20%), Positives = 91/246 (36%), Gaps = 62/246 (25%)

Query: 45  PTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSR----IAMVGPNGIGKSTILK 100
             P++  G P++   + S     G    ++    +    R    + + G  G G++ + +
Sbjct: 253 EPPEEGIGEPVLEVRNLS-----GGGKVRD----VSFTVRAGEILGIAGLVGAGRTELAR 303

Query: 101 LIAGELQPSSGTV--------FRSAKVRIA--------------VFSQHHVDGLDLSSNP 138
            + G    SSG +         RS +  I               +     +   +++   
Sbjct: 304 ALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSI-AENITLAS 362

Query: 139 LLYMMRCFPGVPEQKLRAHL----GSFGVTGNLALQPMYTLSGG--QKSRVAFAKITFKK 192
           L    R    +  +K RA          +      QP+ TLSGG  QK  V  A+     
Sbjct: 363 LRRFSRRG-LIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQK--VVLARWLATD 419

Query: 193 PHIILLDEPSNHLDLDA---VEALIQGLVLFQGGILMVSHDEHLISGSVEELW------- 242
           P +++LDEP+  +D+ A   +  LI+ L      ILM+S +       + EL        
Sbjct: 420 PKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSE-------LPELLGLSDRIL 472

Query: 243 VVSEGK 248
           V+ EG+
Sbjct: 473 VMREGR 478

Length = 500

>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 174 TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ 215
            LS G++  +A A+   + P I++LDE ++++D +  E LIQ
Sbjct: 139 NLSQGERQLLAIARAMLRDPKILILDEATSNIDTET-EKLIQ 179

Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 4/59 (6%)

Query: 175 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAV----EALIQGLVLFQGGILMVSH 229
           LSGG+K RV  A+   K+P + L DEP+  LD         AL + +      +++ SH
Sbjct: 169 LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSH 227

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 39.2 bits (91), Expect = 0.002
 Identities = 19/43 (44%), Positives = 26/43 (60%)

Query: 71  LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
           ++K+LNF +      A VG +G GKSTILKLI     P+ G +
Sbjct: 400 IYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDI 442

Length = 1466

>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 46/164 (28%), Positives = 74/164 (45%), Gaps = 28/164 (17%)

Query: 78  GIDLDSR----IAMVGPNGIGKSTILKLIAGELQPS---------SGTVFRSAKVR---- 120
           GIDL+ R    + + G NG GKST++K+++G + P          SG+  +++ +R    
Sbjct: 19  GIDLEVRPGECVGLCGENGAGKSTLMKILSG-VYPHGTWDGEIYWSGSPLKASNIRDTER 77

Query: 121 --IAVFSQHH--VDGLDLSSNPLLYMMRCFPGV----PEQKLRAH--LGSFGVTGNLALQ 170
             I +  Q    V  L ++ N  L      PG         LRA   L    +  +   +
Sbjct: 78  AGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTR 137

Query: 171 PMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALI 214
           P+    GGQ+  V  AK   K+  +++LDEPS+ L     E L+
Sbjct: 138 PVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILL 181

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500

>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 17/73 (23%)

Query: 174 TLSGGQKSRVAFAK--------ITFKKPHIILLDEPSNHL---DLDAVEALIQGLVLFQG 222
           TLSGG++ R A AK        IT+      +LDEPS  L   D   +  +I+ L     
Sbjct: 476 TLSGGEQERTALAKHLGAELIGITY------ILDEPSIGLHPQDTHKLINVIKKLRDQGN 529

Query: 223 GILMVSHDEHLIS 235
            +L+V HDE +IS
Sbjct: 530 TVLLVEHDEQMIS 542

Length = 1809

>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 44/196 (22%), Positives = 84/196 (42%), Gaps = 47/196 (23%)

Query: 71  LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVD 130
           +   +N  I  ++  A++GP+G GKST+L++    ++     ++  A+V   V+    +D
Sbjct: 18  VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIE-----LYPEARVSGEVY----LD 68

Query: 131 GLDLSSNPLLYMMR----------------CFPGVP---------------EQKLRAHLG 159
           G D+    ++ + R                 F  V                ++++R  L 
Sbjct: 69  GQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALE 128

Query: 160 SFGV---TGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQG 216
              +     +    P   LSGGQ+ R+  A+    +P ++L DEP+ +LD +   A I+ 
Sbjct: 129 KAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENT-AKIES 187

Query: 217 LVL---FQGGILMVSH 229
           L L       I++V+H
Sbjct: 188 LFLELKKDMTIVLVTH 203

Length = 250

>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 38.5 bits (89), Expect = 0.002
 Identities = 51/195 (26%), Positives = 80/195 (41%), Gaps = 35/195 (17%)

Query: 54  PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLI--AGELQPSS- 110
           P I   D SF Y       + ++  I  +   A++GP+G GKST +K +    EL+    
Sbjct: 6   PAIKVKDLSF-YYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVK 64

Query: 111 --------GTVFRSAKVRI--------AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKL 154
                   G      ++ I         VF + +   + +  N + Y +R    +P+  L
Sbjct: 65  VEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYEN-VAYGVRISAKLPQADL 123

Query: 155 RAHLGSFGVTGNLAL---------QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHL 205
              + S       AL         +    LSGGQ+ R+  A+    KP ++L+DEP + L
Sbjct: 124 DEIVES--ALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSAL 181

Query: 206 DLDA---VEALIQGL 217
           D  A   VE LI  L
Sbjct: 182 DPIATMKVEELIHSL 196

Length = 259

>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 3/46 (6%)

Query: 175 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLD---LDAVEALIQGL 217
           LSGGQ+ R+  A+    +P ++L+DEP++ LD      +E LIQ L
Sbjct: 147 LSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQEL 192

Length = 250

>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 11/100 (11%)

Query: 175 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQG----GILMVSHD 230
           LSGG   RV  A     +P +++ DEP+  LD+     +I+ L+  Q      +++++HD
Sbjct: 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHD 213

Query: 231 EHLISGSVEEL------WVVSEGKATP-FHGTFHDYKKML 263
             L++ +  ++       VV  GKA   F    H Y + L
Sbjct: 214 LALVAEAAHKIIVMYAGQVVETGKAHDIFRAPRHPYTQAL 253

Length = 326

>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 6/71 (8%)

Query: 170 QPMYTLSGGQKSRVAFAKITFKK---PHIILLDEPSNHLDLDAVEALI---QGLVLFQGG 223
           QP  TLSGG+  R+  AK   K+     + +LDEP+  L    V+ L+   Q LV     
Sbjct: 165 QPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNT 224

Query: 224 ILMVSHDEHLI 234
           ++++ H+  +I
Sbjct: 225 VVVIEHNLDVI 235

Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261

>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 38.3 bits (89), Expect = 0.002
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 170 QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA---VEALIQGL 217
               +LSGGQ+ R+  A+     P +IL+DEP + LD  A   +E LI+ L
Sbjct: 145 DSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDL 195

Length = 253

>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 38.3 bits (89), Expect = 0.002
 Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 3/46 (6%)

Query: 175 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA---VEALIQGL 217
           LSGGQ+ R+  A+     P +IL+DEP++ LD  A   +E LI+ L
Sbjct: 201 LSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEEL 246

Length = 305

>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 3/51 (5%)

Query: 170 QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA---VEALIQGL 217
           +  + LSGGQ+ R+  A+    +P ++LLDEP++ LD  +   +E LI  L
Sbjct: 164 ENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITEL 214

Length = 272

>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional

 Score = 38.2 bits (89), Expect = 0.003
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 170 QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD---LDAVEALIQGL 217
           +P   LSGGQ+ R+  A+    +P ++L+DEP + LD     A+E LI  L
Sbjct: 144 KPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINEL 194

Length = 258

>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 38.1 bits (88), Expect = 0.003
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 4/59 (6%)

Query: 175 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLD---LDAVEALIQGLVLFQGGILMVSHD 230
           LSGGQ+ R+  A+    KP ++L+DEP + LD      VE L   L   Q  I+MV+H+
Sbjct: 162 LSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHN 219

Length = 274

>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional

 Score = 38.1 bits (89), Expect = 0.003
 Identities = 25/82 (30%), Positives = 47/82 (57%), Gaps = 3/82 (3%)

Query: 170 QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF-QGG--ILM 226
           Q +  LSGG + +VA A+    +P +++LDEP+  +D+ A + + Q +  F   G  I++
Sbjct: 391 QAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIIL 450

Query: 227 VSHDEHLISGSVEELWVVSEGK 248
           VS +   + G  + + V+ EG+
Sbjct: 451 VSSEMPEVLGMSDRILVMHEGR 472

Length = 501

>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional

 Score = 37.5 bits (87), Expect = 0.004
 Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 4/59 (6%)

Query: 175 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA---VEALIQGLVLFQGGILMVSHD 230
           LSGGQ+ R+  A+    +P ++L+DEP++ LD  A   +E LI  L   +  I++V+H+
Sbjct: 150 LSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHN 207

Length = 253

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	266
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	100.0
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	100.0
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	100.0
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	100.0
COG0488	530	Uup ATPase components of ABC transporters with dup	100.0
COG1127	263	Ttg2A ABC-type transport system involved in resist	100.0
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	100.0
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	100.0
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	100.0
PLN03073	718	ABC transporter F family; Provisional	100.0
COG3638	258	ABC-type phosphate/phosphonate transport system, A	100.0
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	100.0
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	100.0
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	100.0
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	100.0
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	100.0
PRK13537	306	nodulation ABC transporter NodI; Provisional	100.0
PRK11147	635	ABC transporter ATPase component; Reviewed	100.0
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	100.0
PRK13536	340	nodulation factor exporter subunit NodI; Provision	100.0
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	100.0
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	100.0
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	100.0
PRK15064	530	ABC transporter ATP-binding protein; Provisional	100.0
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	100.0
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	100.0
COG2884	223	FtsE Predicted ATPase involved in cell division [C	100.0
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	100.0
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	100.0
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	100.0
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	100.0
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	100.0
COG0488	530	Uup ATPase components of ABC transporters with dup	100.0
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	100.0
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	100.0
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	100.0
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	100.0
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	100.0
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	100.0
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	100.0
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	100.0
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	100.0
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	100.0
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	100.0
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	100.0
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	100.0
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	100.0
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	100.0
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	100.0
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	100.0
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	100.0
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	100.0
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	100.0
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	100.0
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	100.0
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	100.0
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	100.0
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	100.0
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	100.0
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	100.0
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	100.0
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	100.0
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	100.0
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	100.0
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	100.0
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	100.0
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	100.0
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	100.0
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	100.0
PRK10908	222	cell division protein FtsE; Provisional	100.0
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	100.0
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	100.0
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	100.0
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	100.0
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03269	210	ABC_putative_ATPase This subfamily is involved in	100.0
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	100.0
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	100.0
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	100.0
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	100.0
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	100.0
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	100.0
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	100.0
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	100.0
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	100.0
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	100.0
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	100.0
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	100.0
PRK15064	530	ABC transporter ATP-binding protein; Provisional	100.0
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	100.0
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	100.0
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	100.0
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	100.0
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	100.0
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	100.0
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	100.0
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	100.0
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	100.0
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	100.0
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	100.0
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	100.0
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	100.0
COG0411	250	LivG ABC-type branched-chain amino acid transport	100.0
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	100.0
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	100.0
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	100.0
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	100.0
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	100.0
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	100.0
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	100.0
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	100.0
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK09984	262	phosphonate/organophosphate ester transporter subu	100.0
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	100.0
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	100.0
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	100.0
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	100.0
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	100.0
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	100.0
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	100.0
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	100.0
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	100.0
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	100.0
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	100.0
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	100.0
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	100.0
COG4988	559	CydD ABC-type transport system involved in cytochr	100.0
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	100.0
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	100.0
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	100.0
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	100.0
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	100.0
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11147	635	ABC transporter ATPase component; Reviewed	100.0
COG1123	539	ATPase components of various ABC-type transport sy	100.0
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	100.0
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	100.0
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	100.0
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	100.0
COG4152	300	ABC-type uncharacterized transport system, ATPase	100.0
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	100.0
PRK10261	623	glutathione transporter ATP-binding protein; Provi	100.0
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	100.0
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	100.0
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	100.0
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	100.0
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	100.0
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	100.0
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG0410	237	LivF ABC-type branched-chain amino acid transport	100.0
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	100.0
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	100.0
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	100.0
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	100.0
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	100.0
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	100.0
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	100.0
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	100.0
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	100.0
PRK10261	623	glutathione transporter ATP-binding protein; Provi	100.0
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	100.0
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
KOG0062	582	consensus ATPase component of ABC transporters wit	100.0
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	100.0
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	100.0
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	100.0
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	100.0
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	100.0
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	100.0
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	100.0
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	100.0
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	100.0
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	100.0
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	100.0
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	100.0
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03299	235	ABC_ModC_like Archeal protein closely related to M	100.0
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	100.0
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	100.0
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	100.0
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	100.0
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	100.0
PRK10938	490	putative molybdenum transport ATP-binding protein	100.0
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	100.0
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	100.0
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG4987	573	CydC ABC-type transport system involved in cytochr	100.0
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	100.0
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	100.0
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	100.0
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	100.0
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	100.0
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	100.0
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	100.0
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	100.0
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	100.0
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	100.0
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	100.0
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	100.0
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	100.0
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	100.0
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	100.0
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	100.0
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	100.0
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	100.0
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	100.0
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	100.0
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03215	182	ABC_Carb_Monos_II This family represents domain II	100.0
cd03216	163	ABC_Carb_Monos_I This family represents the domain	100.0
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	100.0
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	100.0
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	100.0
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	100.0
COG1123	539	ATPase components of various ABC-type transport sy	100.0
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	100.0
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	100.0
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	100.0
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	100.0
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	100.0
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	100.0
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG4559	259	ABC-type hemin transport system, ATPase component	100.0
cd03234	226	ABCG_White The White subfamily represents ABC tran	100.0
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	100.0
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	100.0
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG4181	228	Predicted ABC-type transport system involved in ly	100.0
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	100.0
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	100.0
KOG0927	614	consensus Predicted transporter (ABC superfamily)	100.0
cd03246	173	ABCC_Protease_Secretion This family represents the	100.0
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	100.0
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	100.0
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	100.0
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	100.0
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	100.0
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	100.0
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	100.0
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	100.0
PRK13546	264	teichoic acids export protein ATP-binding subunit;	100.0
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	100.0
PRK10938	490	putative molybdenum transport ATP-binding protein	100.0
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	100.0
COG4598	256	HisP ABC-type histidine transport system, ATPase c	100.0
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	100.0
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	100.0
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	100.0
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	100.0
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	100.0
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	100.0
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	100.0
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	100.0
PRK10522	547	multidrug transporter membrane component/ATP-bindi	100.0
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	100.0
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	100.0
PRK03695	248	vitamin B12-transporter ATPase; Provisional	100.0
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	100.0
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	100.0
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	100.0
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	100.0
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	100.0
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	100.0
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	100.0
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	100.0
PRK13409	590	putative ATPase RIL; Provisional	100.0
PLN03232	1495	ABC transporter C family member; Provisional	100.0
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	100.0
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	100.0
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	100.0
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	100.0
PLN03130	1622	ABC transporter C family member; Provisional	100.0
COG4525	259	TauB ABC-type taurine transport system, ATPase com	100.0
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	100.0
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	100.0
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	100.0
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	100.0
PLN03073	718	ABC transporter F family; Provisional	100.0
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	100.0
COG3845	501	ABC-type uncharacterized transport systems, ATPase	100.0
COG4619	223	ABC-type uncharacterized transport system, ATPase	100.0
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	100.0
COG4172	534	ABC-type uncharacterized transport system, duplica	100.0
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	100.0
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	100.0
PTZ00243	1560	ABC transporter; Provisional	100.0
PLN03211	659	ABC transporter G-25; Provisional	100.0
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	100.0
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	100.0
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	100.0
COG4586	325	ABC-type uncharacterized transport system, ATPase	100.0
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	100.0
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	100.0
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	100.0
PRK10535	648	macrolide transporter ATP-binding /permease protei	100.0
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	100.0
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	100.0
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	100.0
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	100.0
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	100.0
COG4674	249	Uncharacterized ABC-type transport system, ATPase	100.0
PLN03232	1495	ABC transporter C family member; Provisional	100.0
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	100.0
PLN03130	1622	ABC transporter C family member; Provisional	100.0
KOG0056	790	consensus Heavy metal exporter HMT1, ABC superfami	100.0
PRK13409	590	putative ATPase RIL; Provisional	100.0
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	100.0
COG4172	534	ABC-type uncharacterized transport system, duplica	100.0
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	100.0
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	100.0
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	100.0
KOG0062	582	consensus ATPase component of ABC transporters wit	100.0
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	100.0
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	100.0
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	100.0
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	100.0
PLN03140	1470	ABC transporter G family member; Provisional	100.0
COG4133	209	CcmA ABC-type transport system involved in cytochr	100.0
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	100.0
KOG0927	614	consensus Predicted transporter (ABC superfamily)	100.0
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	100.0
PTZ00243	1560	ABC transporter; Provisional	100.0
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	100.0
PLN03140	1470	ABC transporter G family member; Provisional	100.0
COG4136	213	ABC-type uncharacterized transport system, ATPase	100.0
KOG0054	1381	consensus Multidrug resistance-associated protein/	100.0
KOG0054	1381	consensus Multidrug resistance-associated protein/	100.0
KOG0059	885	consensus Lipid exporter ABCA1 and related protein	100.0
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	100.0
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	100.0
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	100.0
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.98
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.97
COG4178	604	ABC-type uncharacterized transport system, permeas	99.97
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.97
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.97
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.97
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	99.97
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.97
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	99.96
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.96
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.96
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.96
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.96
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.96
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.95
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.95
KOG0060	659	consensus Long-chain acyl-CoA transporter, ABC sup	99.95
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.95
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.95
KOG2355	291	consensus Predicted ABC-type transport, ATPase com	99.94
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	99.94
KOG0064	728	consensus Peroxisomal long-chain acyl-CoA transpor	99.93
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	99.93
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.92
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	99.91
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.91
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	99.91
cd03239	178	ABC_SMC_head The structural maintenance of chromos	99.89
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	99.89
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	99.87
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	99.87
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.87
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	99.86
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.86
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	99.84
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	99.83
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	99.82
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.81
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.81
cd03242	270	ABC_RecF RecF is a recombinational DNA repair ATPa	99.8
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.8
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	99.79
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	99.76
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	99.75
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	99.72
PF02463	220	SMC_N: RecF/RecN/SMC N terminal domain; InterPro:	99.71
PRK00064	361	recF recombination protein F; Reviewed	99.7
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	99.69
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	99.67
PRK13695	174	putative NTPase; Provisional	99.65
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	99.59
PRK00409	782	recombination and DNA strand exchange inhibitor pr	99.59
cd01128	249	rho_factor Transcription termination factor rho is	99.54
TIGR00618	1042	sbcc exonuclease SbcC. This family is based on the	99.53
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	99.52
PHA02562	562	46 endonuclease subunit; Provisional	99.52
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	99.5
PRK08533	230	flagellar accessory protein FlaH; Reviewed	99.5
PRK10869	553	recombination and repair protein; Provisional	99.47
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	99.47
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	99.46
PRK01156	895	chromosome segregation protein; Provisional	99.45
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.44
PRK03918	880	chromosome segregation protein; Provisional	99.44
PF13304	303	AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T	99.42
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	99.4
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.39
PRK10246	1047	exonuclease subunit SbcC; Provisional	99.38
COG3910	233	Predicted ATPase [General function prediction only	99.36
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.35
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.34
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	99.27
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	99.27
PRK13830	818	conjugal transfer protein TrbE; Provisional	99.24
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.24
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	99.23
PRK02224	880	chromosome segregation protein; Provisional	99.2
PRK06067	234	flagellar accessory protein FlaH; Validated	99.17
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	99.14
TIGR00611	365	recf recF protein. All proteins in this family for	99.07
smart00382	148	AAA ATPases associated with a variety of cellular	99.05
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	99.05
PRK05399	854	DNA mismatch repair protein MutS; Provisional	99.0
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	98.99
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	98.98
TIGR01026	440	fliI_yscN ATPase FliI/YscN family. This family of	98.97
PRK14079	349	recF recombination protein F; Provisional	98.93
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	98.9
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	98.9
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	98.88
COG4637	373	Predicted ATPase [General function prediction only	98.88
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.84
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	98.79
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	98.78
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.77
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	98.71
TIGR00767	415	rho transcription termination factor Rho. Members	98.7
PF00488	235	MutS_V: MutS domain V C-terminus.; InterPro: IPR00	98.69
PRK13891	852	conjugal transfer protein TrbE; Provisional	98.68
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	98.66
PRK07594	433	type III secretion system ATPase SsaN; Validated	98.65
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	98.63
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	98.62
PF13555	62	AAA_29: P-loop containing region of AAA domain	98.62
cd01136	326	ATPase_flagellum-secretory_path_III Flagellum-spec	98.59
PF13558	90	SbcCD_C: Putative exonuclease SbcCD, C subunit; PD	98.57
PRK09862	506	putative ATP-dependent protease; Provisional	98.54
PRK13898	800	type IV secretion system ATPase VirB4; Provisional	98.54
TIGR01070	840	mutS1 DNA mismatch repair protein MutS.	98.53
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	98.53
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.49
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	98.48
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	98.47
PRK08149	428	ATP synthase SpaL; Validated	98.46
TIGR02546	422	III_secr_ATP type III secretion apparatus H+-trans	98.44
PRK09099	441	type III secretion system ATPase; Provisional	98.41
TIGR03496	411	FliI_clade1 flagellar protein export ATPase FliI.	98.41
PRK00300	205	gmk guanylate kinase; Provisional	98.4
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.4
TIGR03498	418	FliI_clade3 flagellar protein export ATPase FliI.	98.39
cd01122	271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	98.39
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.38
PRK09825	176	idnK D-gluconate kinase; Provisional	98.38
TIGR03497	413	FliI_clade2 flagellar protein export ATPase FliI.	98.38
PRK06315	442	type III secretion system ATPase; Provisional	98.37
PF09818	448	ABC_ATPase: Predicted ATPase of the ABC class; Int	98.37

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=4.4e-57  Score=373.16  Aligned_cols=202  Identities=22%  Similarity=0.358  Sum_probs=171.4

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------eeE
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI  121 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~i  121 (266)
                      ++|+++|++++| ++..+|++||++|.+||+++|+||||||||||||||+||.+|++|+|.++|.            .++
T Consensus         1 ~mi~i~~l~K~f-g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v   79 (240)
T COG1126           1 MMIEIKNLSKSF-GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV   79 (240)
T ss_pred             CeEEEEeeeEEe-CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence            479999999999 5667999999999999999999999999999999999999999999999883            258


Q ss_pred             EEEeccccCCCCCCCcHHHHHHHh---CCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 024529          122 AVFSQHHVDGLDLSSNPLLYMMRC---FPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH  194 (266)
Q Consensus       122 ~~~~q~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~  194 (266)
                      |++||++.  +....+.++++...   ..+    ..++.+.++|+++|+.+. .+.++.+|||||||||||||||+.+|+
T Consensus        80 GmVFQ~fn--LFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~k-a~~yP~qLSGGQqQRVAIARALaM~P~  156 (240)
T COG1126          80 GMVFQQFN--LFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADK-ADAYPAQLSGGQQQRVAIARALAMDPK  156 (240)
T ss_pred             Ceeccccc--ccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhh-hhhCccccCcHHHHHHHHHHHHcCCCC
Confidence            99999863  33344555554321   112    234567889999999864 678889999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHH---hhcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          195 IILLDEPSNHLDLDAVEALIQGL---VLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       195 lllLDEPt~~LD~~~~~~l~~~l---~~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      ++|+|||||+|||+...++++.+   .+.+.|+|+|||++.|+..+||||++|++|+++ ..|+++++.
T Consensus       157 vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~ii-e~g~p~~~f  224 (240)
T COG1126         157 VMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKII-EEGPPEEFF  224 (240)
T ss_pred             EEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEE-EecCHHHHh
Confidence            99999999999999888776655   455789999999999999999999999999987 467877763

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=100.00  E-value=1.5e-54  Score=372.79  Aligned_cols=202  Identities=32%  Similarity=0.513  Sum_probs=171.8

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEEE
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV  123 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~  123 (266)
                      +|+++|++++|+ ++.+++|+||+|++|++++|+||||||||||||+|+|+++|.+|+|.++++           ..++|
T Consensus         2 ~L~~~~ls~~y~-~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~   80 (258)
T COG1120           2 MLEVENLSFGYG-GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAY   80 (258)
T ss_pred             eeEEEEEEEEEC-CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEE
Confidence            689999999995 678999999999999999999999999999999999999999999999885           36999


Q ss_pred             EeccccCCCCCCCcHHHHHHH-----hC---CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 024529          124 FSQHHVDGLDLSSNPLLYMMR-----CF---PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI  195 (266)
Q Consensus       124 ~~q~~~~~~~~~~~~~~~~~~-----~~---~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~l  195 (266)
                      +||.+.....++...+..+.+     .+   ...+.+.+.++|+.+++. ++.++++.+|||||||||.|||||+++|++
T Consensus        81 vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~-~la~r~~~~LSGGerQrv~iArALaQ~~~i  159 (258)
T COG1120          81 VPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLE-HLADRPVDELSGGERQRVLIARALAQETPI  159 (258)
T ss_pred             eccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcH-HHhcCcccccChhHHHHHHHHHHHhcCCCE
Confidence            999964433333222222211     11   112344688899999997 467899999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529          196 ILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  259 (266)
Q Consensus       196 llLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  259 (266)
                      |||||||++||...+.++++.+++.    +.|||+|+||++++.++||++++|++|+++ ..|++++.
T Consensus       160 LLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~-a~G~p~ev  226 (258)
T COG1120         160 LLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIV-AQGTPEEV  226 (258)
T ss_pred             EEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEE-eecCcchh
Confidence            9999999999999999988887654    479999999999999999999999999997 67887765

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.1e-54  Score=368.38  Aligned_cols=204  Identities=26%  Similarity=0.394  Sum_probs=174.1

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe--------eeEEEEe
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------VRIAVFS  125 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------~~i~~~~  125 (266)
                      ++|+++|+++.|++. ++|+||||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+.        .+|||+|
T Consensus         3 ~~i~v~nl~v~y~~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVP   81 (254)
T COG1121           3 PMIEVENLTVSYGNR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVP   81 (254)
T ss_pred             cEEEEeeeEEEECCE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcC
Confidence            579999999999645 6999999999999999999999999999999999999999999997764        4799999


Q ss_pred             ccccCCCCCCCcHHHHHHHh-C---------CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 024529          126 QHHVDGLDLSSNPLLYMMRC-F---------PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI  195 (266)
Q Consensus       126 q~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~l  195 (266)
                      |.......+..++.+.+... +         ...+.+.+.++|+.+|+. ++.++++++|||||+|||.|||||+++|++
T Consensus        82 Q~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~-~~~~r~i~~LSGGQ~QRV~lARAL~~~p~l  160 (254)
T COG1121          82 QKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGME-DLRDRQIGELSGGQKQRVLLARALAQNPDL  160 (254)
T ss_pred             cccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCch-hhhCCcccccCcHHHHHHHHHHHhccCCCE
Confidence            97644455556666655431 1         112357899999999998 578899999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          196 ILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       196 llLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      |||||||+|+|+.++..+.+.|++   .++||++||||++.+..+||+|+.|+.. +. +.|+++++.+
T Consensus       161 llLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~~-~~-~~G~~~~~~~  227 (254)
T COG1121         161 LLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRH-LI-ASGPPEEVLT  227 (254)
T ss_pred             EEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcCe-eE-eccChhhccC
Confidence            999999999999999888777654   4679999999999999999999999754 43 6788877644

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=6.3e-53  Score=354.53  Aligned_cols=204  Identities=25%  Similarity=0.409  Sum_probs=175.5

Q ss_pred             CcEEEEeeEEEcCCCC---cceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------
Q 024529           54 PIISFSDASFGYPGGP---ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------  118 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~---~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------  118 (266)
                      ++|+++|+++.|+.+.   .++++|||+|.+||++||+|+||||||||.|+|+|+.+|++|+|.++|+            
T Consensus         2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~   81 (252)
T COG1124           2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY   81 (252)
T ss_pred             ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhc
Confidence            5799999999996543   4999999999999999999999999999999999999999999999883            


Q ss_pred             eeEEEEeccccCCCCCCCcHHHHHHHhC----CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 024529          119 VRIAVFSQHHVDGLDLSSNPLLYMMRCF----PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH  194 (266)
Q Consensus       119 ~~i~~~~q~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~  194 (266)
                      ..+.++||++...++...++..-+....    ....++++.++|+.+|+.+...++++.+|||||+||+||||||+.+|+
T Consensus        82 ~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~Pk  161 (252)
T COG1124          82 RPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPK  161 (252)
T ss_pred             cceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCC
Confidence            3588999999776666655443332211    123456689999999999989999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhH
Q 024529          195 IILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHD  258 (266)
Q Consensus       195 lllLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~  258 (266)
                      +||||||||+||+....++++.|.+    ++.|+|+||||+..+..+||||++|++|++++ .++..+
T Consensus       162 lLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE-~~~~~~  228 (252)
T COG1124         162 LLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVE-IGPTEE  228 (252)
T ss_pred             EEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEE-eechhh
Confidence            9999999999999999998888754    45699999999999999999999999999974 444444

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=100.00  E-value=3.5e-52  Score=392.66  Aligned_cols=262  Identities=42%  Similarity=0.717  Sum_probs=224.9

Q ss_pred             ChHHHHHHhhhhhhHHHHHHHHHHHHhccCc---ccccCCCC-cccccCCCCCCCCCCcEEEEeeEEEcCCCCcceeece
Q 024529            1 MQSFIDKFRYNAKRASLVQSRIKALERMGHV---DEVVNDPD-YKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLN   76 (266)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~l~~vs   76 (266)
                      +++||++....+++.+.++++.++++++...   ........ ..+.++.+....++.+++++|+++.|++++.+++++|
T Consensus       263 ~~~~i~r~~~~~~~~k~a~sr~k~l~k~~~~~~~~~~~~~~~~~~~~f~~~~~~~g~~vl~~~~~~~~y~~~~~l~~~~s  342 (530)
T COG0488         263 EQEWIRRGKAAASKAKKAKSRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGGRLLLKDLS  342 (530)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHhhhhhcccccccccceeeccCCcccCCCeeEEEeccccccCCCceeecCce
Confidence            4689999998888888899999999887632   22221111 2234444332356789999999999966568999999


Q ss_pred             EEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHH
Q 024529           77 FGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRA  156 (266)
Q Consensus        77 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (266)
                      |.|.+|+++||+||||+|||||||+|+|...|.+|+|.+....++||+.|+... +....++++++....+...+..++.
T Consensus       343 ~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~-l~~~~t~~d~l~~~~~~~~e~~~r~  421 (530)
T COG0488         343 FRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDE-LDPDKTVLEELSEGFPDGDEQEVRA  421 (530)
T ss_pred             EEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhh-cCccCcHHHHHHhhCccccHHHHHH
Confidence            999999999999999999999999999999999999999888999999998733 2344567787776665555788999


Q ss_pred             HHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHh
Q 024529          157 HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISG  236 (266)
Q Consensus       157 ~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~  236 (266)
                      +|..|+++.+...+++..||||||.|+.||+.++.+|++|||||||||||..+++.+.+.|.++.+|||+||||++|+.+
T Consensus       422 ~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~Gtvl~VSHDr~Fl~~  501 (530)
T COG0488         422 YLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGTVLLVSHDRYFLDR  501 (530)
T ss_pred             HHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHh
Confidence            99999999888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCEEEEEeCCeEEecCCChhHHHHHHh
Q 024529          237 SVEELWVVSEGKATPFHGTFHDYKKMLQ  264 (266)
Q Consensus       237 ~~d~i~~l~~G~i~~~~g~~~~~~~~~~  264 (266)
                      +|+++|++.+ ++..+.|+|++|.+...
T Consensus       502 va~~i~~~~~-~~~~~~g~y~~y~~~~~  528 (530)
T COG0488         502 VATRIWLVED-KVEEFEGGYEDYLEQKK  528 (530)
T ss_pred             hcceEEEEcC-ceeEcCCCHHHHHHhhc
Confidence            9999999998 88788999999987654

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=9.4e-53  Score=352.34  Aligned_cols=206  Identities=25%  Similarity=0.409  Sum_probs=172.1

Q ss_pred             CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe--------------
Q 024529           53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------  118 (266)
Q Consensus        53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------  118 (266)
                      .+.|++++|+++| +++.+++||||+|++||+++|+||||||||||||+|.|+++|++|+|++.|.              
T Consensus         6 ~~~I~vr~v~~~f-G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir   84 (263)
T COG1127           6 EPLIEVRGVTKSF-GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR   84 (263)
T ss_pred             cceEEEeeeeeec-CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence            4679999999999 5678999999999999999999999999999999999999999999998874              


Q ss_pred             eeEEEEecccc--CCCCCCCcHHHHHHHhCCCCcHHH----HHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccC
Q 024529          119 VRIAVFSQHHV--DGLDLSSNPLLYMMRCFPGVPEQK----LRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK  192 (266)
Q Consensus       119 ~~i~~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~  192 (266)
                      .++|++||...  ..+++.+|+...+.. +...++..    +..-|+.+|+.....++.+++|||||++|++||||++.+
T Consensus        85 ~r~GvlFQ~gALFssltV~eNVafplre-~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAiald  163 (263)
T COG1127          85 KRMGVLFQQGALFSSLTVFENVAFPLRE-HTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALD  163 (263)
T ss_pred             hheeEEeeccccccccchhHhhheehHh-hccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcC
Confidence            36999999863  333333333322222 22444444    444588899988767889999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          193 PHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       193 p~lllLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      |++|++||||+||||.+...+-+.+++    .+.|+++||||++.+..+|||++++.+|++. +.|+++++.+
T Consensus       164 Pell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~-~~Gt~~el~~  235 (263)
T COG1127         164 PELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVI-AEGTPEELLA  235 (263)
T ss_pred             CCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEE-EeCCHHHHHh
Confidence            999999999999999887665555443    4679999999999999999999999999996 8999998754

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9.2e-52  Score=401.82  Aligned_cols=258  Identities=39%  Similarity=0.714  Sum_probs=204.3

Q ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHhccCcccccCCCCcccccCCCCCCCCCCcEEEEeeEEEcCCCCcceeeceEEEeCC
Q 024529            3 SFIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLD   82 (266)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~G   82 (266)
                      +|+.+++..+.+.+.++++.+.++++.............+.++.+. ..+.++|+++|+++.|+ ++.+|+|+||+|.+|
T Consensus       261 ~~i~r~~~~a~~~~~a~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~l~~~y~-~~~il~~isl~i~~G  338 (638)
T PRK10636        261 SYIDRFRAKATKAKQAQSRIKMLERMELIAPAHVDNPFHFSFRAPE-SLPNPLLKMEKVSAGYG-DRIILDSIKLNLVPG  338 (638)
T ss_pred             HHHHHhhhhhhhHHHHHHHHHHHHHhhcccccccCCceeEecCCCc-cCCCceEEEEeeEEEeC-CeeeeccceEEECCC
Confidence            4566655555566667777777777643221111111222333222 23467899999999995 457999999999999


Q ss_pred             cEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcC
Q 024529           83 SRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFG  162 (266)
Q Consensus        83 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  162 (266)
                      ++++|+|||||||||||++|+|+++|++|+|.+.....++|++|+....+....+....+...........+.++|+.++
T Consensus       339 e~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~  418 (638)
T PRK10636        339 SRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFG  418 (638)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcC
Confidence            99999999999999999999999999999999876678999999743223333344444332222233567889999999


Q ss_pred             CCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcCEEE
Q 024529          163 VTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELW  242 (266)
Q Consensus       163 l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d~i~  242 (266)
                      +.....++++++|||||||||+||++|+.+|+||||||||||||+.++..+.+.|.++++|||+||||++++..+||+++
T Consensus       419 l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~gtvi~vSHd~~~~~~~~d~i~  498 (638)
T PRK10636        419 FQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLRSTTDDLY  498 (638)
T ss_pred             CChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHhCCEEE
Confidence            96545678999999999999999999999999999999999999999999999999998899999999999999999999


Q ss_pred             EEeCCeEEecCCChhHHHHH
Q 024529          243 VVSEGKATPFHGTFHDYKKM  262 (266)
Q Consensus       243 ~l~~G~i~~~~g~~~~~~~~  262 (266)
                      +|++|+++.+.|++++|.+.
T Consensus       499 ~l~~G~i~~~~g~~~~~~~~  518 (638)
T PRK10636        499 LVHDGKVEPFDGDLEDYQQW  518 (638)
T ss_pred             EEECCEEEEcCCCHHHHHHH
Confidence            99999997789999999543

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2e-52  Score=354.07  Aligned_cols=190  Identities=27%  Similarity=0.389  Sum_probs=161.7

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------eeEEEEecc
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------VRIAVFSQH  127 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------~~i~~~~q~  127 (266)
                      .+++++++++.|+ ...+|+|+||+|.+||+++|+||||||||||||+|+|+.+|++|+|.++++      ..++|+||+
T Consensus         2 ~~l~i~~v~~~f~-~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~   80 (248)
T COG1116           2 ALLEIEGVSKSFG-GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQE   80 (248)
T ss_pred             ceEEEEeeEEEeC-ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEecc
Confidence            4689999999995 477999999999999999999999999999999999999999999999875      379999998


Q ss_pred             ccCCCCCCCcHHHHHHHhC------CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 024529          128 HVDGLDLSSNPLLYMMRCF------PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP  201 (266)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEP  201 (266)
                      +.  +....+..++.....      .....+++.++|+.+|+.+ ..++++++|||||||||+|||||+.+|++||||||
T Consensus        81 ~~--LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~-~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEP  157 (248)
T COG1116          81 DA--LLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAG-FEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEP  157 (248)
T ss_pred             Cc--ccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcc-hhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            64  223344444432111      1123457889999999986 56789999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHH----hhcCCEEEEEecCHHHHHhhcCEEEEEeCC
Q 024529          202 SNHLDLDAVEALIQGL----VLFQGGILMVSHDEHLISGSVEELWVVSEG  247 (266)
Q Consensus       202 t~~LD~~~~~~l~~~l----~~~~~tiiivtHd~~~~~~~~d~i~~l~~G  247 (266)
                      |++||..++..+.+.+    .+.+.||++||||.+++..++|||++|.++
T Consensus       158 FgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~  207 (248)
T COG1116         158 FGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR  207 (248)
T ss_pred             cchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence            9999999988776655    445789999999999999999999999983

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=1.3e-52  Score=353.69  Aligned_cols=201  Identities=24%  Similarity=0.338  Sum_probs=171.4

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEEE
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV  123 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~  123 (266)
                      ||+++||||.|+ ++.+++|+||+|++||+++++|||||||||+||+|.+++.|++|+|++++.           .+|||
T Consensus         1 MI~~~nvsk~y~-~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY   79 (309)
T COG1125           1 MIEFENVSKRYG-NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY   79 (309)
T ss_pred             CceeeeeehhcC-CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence            689999999995 667999999999999999999999999999999999999999999999874           36999


Q ss_pred             EeccccCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCc-ccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 024529          124 FSQHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTG-NLALQPMYTLSGGQKSRVAFAKITFKKPHII  196 (266)
Q Consensus       124 ~~q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGqkqRv~lAral~~~p~ll  196 (266)
                      +-|..-  +....++.+++...  ..++    ..+++.++|+.+|+++ .+.++++++|||||+|||.+||||+.+|+||
T Consensus        80 viQqig--LFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~il  157 (309)
T COG1125          80 VIQQIG--LFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPIL  157 (309)
T ss_pred             hhhhcc--cCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeE
Confidence            999753  33344454444321  1122    2467889999999975 4788999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529          197 LLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  259 (266)
Q Consensus       197 lLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  259 (266)
                      ||||||++|||.++..+.+.+.+    .++|||+||||++++.+++|||.+|++|+++.+ ++++++
T Consensus       158 LMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~-~~P~~i  223 (309)
T COG1125         158 LMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQY-DTPDEI  223 (309)
T ss_pred             eecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEe-CCHHHH
Confidence            99999999999999988776653    578999999999999999999999999999864 665554

>PLN03073 ABC transporter F family; Provisional

Probab=100.00  E-value=2.9e-51  Score=400.84  Aligned_cols=261  Identities=95%  Similarity=1.483  Sum_probs=203.1

Q ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHhccCcccccCCCCcccccCCCCCCCCCCcEEEEeeEEEcCCCCcceeeceEEEeCC
Q 024529            3 SFIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLD   82 (266)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~G   82 (266)
                      +|+++++.++++.+.++++.+.++++........++.....++.+...++.++|+++|+++.|++++.+|+|+||+|.+|
T Consensus       456 ~~i~~~~~~a~~~~~~~s~~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ls~~y~~~~~il~~vsl~i~~G  535 (718)
T PLN03073        456 AFIDKFRYNAKRASLVQSRIKALDRLGHVDAVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPLLFKNLNFGIDLD  535 (718)
T ss_pred             HHHHHhhhhhhhhHHHhhcchHHHHHhhhhccccCCCceeecCCCccCCCCceEEEEeeEEEeCCCCeeEeccEEEEcCC
Confidence            34555555555555555555555554322111111111122222111233468999999999964556899999999999


Q ss_pred             cEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcC
Q 024529           83 SRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFG  162 (266)
Q Consensus        83 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  162 (266)
                      ++++|+||||||||||||+|+|+++|++|+|.+.++..++|++|++...++...+....+.........+++.++++.++
T Consensus       536 e~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g  615 (718)
T PLN03073        536 SRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFG  615 (718)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccccccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCC
Confidence            99999999999999999999999999999999888888999999864444444343333322233345677889999999


Q ss_pred             CCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcCEEE
Q 024529          163 VTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELW  242 (266)
Q Consensus       163 l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d~i~  242 (266)
                      +.+...++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.+.++++|||+||||++++..+||+++
T Consensus       616 l~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~~gtvIivSHd~~~i~~~~drv~  695 (718)
T PLN03073        616 VTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISGSVDELW  695 (718)
T ss_pred             CChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEE
Confidence            97545678999999999999999999999999999999999999999999999998877799999999999999999999


Q ss_pred             EEeCCeEEecCCChhHHHHHH
Q 024529          243 VVSEGKATPFHGTFHDYKKML  263 (266)
Q Consensus       243 ~l~~G~i~~~~g~~~~~~~~~  263 (266)
                      +|++|+++.+.|++++|.+..
T Consensus       696 ~l~~G~i~~~~g~~~~~~~~~  716 (718)
T PLN03073        696 VVSEGKVTPFHGTFHDYKKTL  716 (718)
T ss_pred             EEECCEEEEeCCCHHHHHHHh
Confidence            999999977899999998765

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.6e-52  Score=348.78  Aligned_cols=205  Identities=27%  Similarity=0.422  Sum_probs=176.1

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe--------------e
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------V  119 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------~  119 (266)
                      ++|+++||++.|++++.+|+||||+|++||+++|+||||||||||||+|+|+.+|++|+|.+++.              .
T Consensus         2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~   81 (258)
T COG3638           2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR   81 (258)
T ss_pred             ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence            57999999999988889999999999999999999999999999999999999999999998772              3


Q ss_pred             eEEEEeccccCCCCCCCcHHHHHH--------------HhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHH
Q 024529          120 RIAVFSQHHVDGLDLSSNPLLYMM--------------RCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAF  185 (266)
Q Consensus       120 ~i~~~~q~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~l  185 (266)
                      .+||++|.+.  +....+++.+..              ..++..+...+.++|+++|+.+. ..++.++|||||+|||+|
T Consensus        82 ~iGmIfQ~~n--Lv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~-A~qra~~LSGGQQQRVaI  158 (258)
T COG3638          82 DIGMIFQQFN--LVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDK-AYQRASTLSGGQQQRVAI  158 (258)
T ss_pred             hceeEeccCC--cccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHH-HHHHhccCCcchhHHHHH
Confidence            6999999863  222333333322              11223345667889999999854 568889999999999999


Q ss_pred             HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          186 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       186 Aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      ||||+++|+++|.|||+++|||.+.+.+++.|++.    +.|+|++.|+++.+.++|||++-|++|+++ |+|+.+++.+
T Consensus       159 ARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~iv-fDg~~~el~~  237 (258)
T COG3638         159 ARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIV-FDGPASELTD  237 (258)
T ss_pred             HHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEE-EeCChhhhhH
Confidence            99999999999999999999999999999988753    579999999999999999999999999997 9999987654


Q ss_pred             H
Q 024529          262 M  262 (266)
Q Consensus       262 ~  262 (266)
                      .
T Consensus       238 ~  238 (258)
T COG3638         238 E  238 (258)
T ss_pred             H
Confidence            3

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.6e-51  Score=355.94  Aligned_cols=201  Identities=25%  Similarity=0.370  Sum_probs=170.4

Q ss_pred             cEEEEeeEEEcCCC----CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------
Q 024529           55 IISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------  118 (266)
Q Consensus        55 ~l~~~~l~~~y~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------  118 (266)
                      ||++++|+|.|+..    ..+++||||+|++||++||+|.||||||||+|||.+|.+|++|+|.++|.            
T Consensus         1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~   80 (339)
T COG1135           1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ   80 (339)
T ss_pred             CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence            68999999999652    46899999999999999999999999999999999999999999999883            


Q ss_pred             --eeEEEEeccccCCCCCCCcHHHHHHHh--CCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 024529          119 --VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF  190 (266)
Q Consensus       119 --~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~  190 (266)
                        .+||++||++.  +-.+.++..++...  ..+    .-++++.++|+.+|+++ ..++++.+|||||||||+|||||+
T Consensus        81 ~R~~IGMIFQhFn--LLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~d-k~~~yP~qLSGGQKQRVaIARALa  157 (339)
T COG1135          81 LRQKIGMIFQHFN--LLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSD-KADRYPAQLSGGQKQRVAIARALA  157 (339)
T ss_pred             HHhhccEEecccc--ccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChh-hhccCchhcCcchhhHHHHHHHHh
Confidence              36999999863  22223444443211  111    23567889999999985 567889999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529          191 KKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  259 (266)
Q Consensus       191 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  259 (266)
                      .+|+|||.|||||+|||++...+++.|++    .+.||++|||.++.+.++|||+.+|++|+++ ..|++.++
T Consensus       158 ~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lv-E~G~v~~v  229 (339)
T COG1135         158 NNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLV-EEGTVSEV  229 (339)
T ss_pred             cCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEE-EeccHHHh
Confidence            99999999999999999999988888764    4679999999999999999999999999997 46776664

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=5.3e-51  Score=344.47  Aligned_cols=193  Identities=30%  Similarity=0.424  Sum_probs=161.8

Q ss_pred             cEEEEeeEEEcCCC---CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-------------
Q 024529           55 IISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------  118 (266)
Q Consensus        55 ~l~~~~l~~~y~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------  118 (266)
                      +++++||++.|+.+   ..+|+++||+|++||+++|+|||||||||||++|.|+.+|++|.|++.+.             
T Consensus         1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~   80 (226)
T COG1136           1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKL   80 (226)
T ss_pred             CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHH
Confidence            47899999999643   36899999999999999999999999999999999999999999998873             


Q ss_pred             --eeEEEEeccccCCCCCCCcHHHHHHH--hCCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 024529          119 --VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF  190 (266)
Q Consensus       119 --~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~  190 (266)
                        ..+||+||++..  -...+..+++..  .+..    ...+.+..+++.+|+.+...++++.+|||||||||||||||+
T Consensus        81 R~~~iGfvFQ~~nL--l~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~  158 (226)
T COG1136          81 RRKKIGFVFQNFNL--LPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALI  158 (226)
T ss_pred             HHHhEEEECccCCC--CCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHh
Confidence              259999998642  223344444321  1112    234567888999999866665889999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529          191 KKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKAT  250 (266)
Q Consensus       191 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~  250 (266)
                      .+|+++|.||||.+||.++.+.+++.+.+.    +.||||||||.+.+. +|||++.|.+|++.
T Consensus       159 ~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~-~~dr~i~l~dG~~~  221 (226)
T COG1136         159 NNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAK-YADRVIELKDGKIE  221 (226)
T ss_pred             cCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hCCEEEEEeCCeee
Confidence            999999999999999999999998887654    569999999999887 79999999999953

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.6e-50  Score=346.65  Aligned_cols=206  Identities=32%  Similarity=0.484  Sum_probs=176.7

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------eeE
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI  121 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~i  121 (266)
                      +++.+++++|.|+++..+|+++||+|++|++++|+|+||||||||+++++|+++|++|.|.+++.            .++
T Consensus         2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v   81 (235)
T COG1122           2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV   81 (235)
T ss_pred             ceEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence            47899999999976667999999999999999999999999999999999999999999987663            359


Q ss_pred             EEEeccccCCCCCCCcHHHHHHHhC--CCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 024529          122 AVFSQHHVDGLDLSSNPLLYMMRCF--PGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI  195 (266)
Q Consensus       122 ~~~~q~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~l  195 (266)
                      ||++|++...+ +..++.+.+....  .+.    ...++.++++.+++.+ ..++++.+|||||||||+||.+|+.+|++
T Consensus        82 G~VfQnpd~q~-~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~-~~~r~p~~LSGGqkqRvaIA~vLa~~P~i  159 (235)
T COG1122          82 GLVFQNPDDQL-FGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEE-LLDRPPFNLSGGQKQRVAIAGVLAMGPEI  159 (235)
T ss_pred             EEEEECccccc-ccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchh-hccCCccccCCcceeeHHhhHHHHcCCCE
Confidence            99999985443 4445555543211  122    2456788999999985 47899999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHHH
Q 024529          196 ILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM  262 (266)
Q Consensus       196 llLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~  262 (266)
                      |||||||++||+.++..+++.+.++    +.|||++|||++++..+||++++|++|+++ ++|++.++.+.
T Consensus       160 liLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~-~~g~p~~i~~~  229 (235)
T COG1122         160 LLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKIL-ADGDPAEIFND  229 (235)
T ss_pred             EEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEe-ecCCHHHHhhh
Confidence            9999999999999999998888764    359999999999999999999999999996 78998877654

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=3.1e-50  Score=357.13  Aligned_cols=206  Identities=26%  Similarity=0.412  Sum_probs=173.7

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe----------eeEEEE
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVF  124 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~i~~~  124 (266)
                      +++++|+++.|++++.+|+||||+|++|+++||+||||||||||||+|+|+++|++|+|.+.+.          ..+||+
T Consensus         4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~   83 (293)
T COG1131           4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYV   83 (293)
T ss_pred             eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEE
Confidence            5789999999953568999999999999999999999999999999999999999999998873          359999


Q ss_pred             eccccCCCCCCCcHHHHH-HHhCCC---CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 024529          125 SQHHVDGLDLSSNPLLYM-MRCFPG---VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE  200 (266)
Q Consensus       125 ~q~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDE  200 (266)
                      +|++.....++......+ ...+..   ...+++.++++.+++.+ ..++++++||+|||||++||+||+.+|++|||||
T Consensus        84 ~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDE  162 (293)
T COG1131          84 PQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLED-KANKKVRTLSGGMKQRLSIALALLHDPELLILDE  162 (293)
T ss_pred             ccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCch-hhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECC
Confidence            999753333332222222 222221   23567899999999986 3478899999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHhhc---C-CEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHHH
Q 024529          201 PSNHLDLDAVEALIQGLVLF---Q-GGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM  262 (266)
Q Consensus       201 Pt~~LD~~~~~~l~~~l~~~---~-~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~  262 (266)
                      ||+||||.++..+.+.|++.   + .||+++||.++.+..+||+|++|++|+++ +.|+.+++...
T Consensus       163 Pt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~-~~g~~~~l~~~  227 (293)
T COG1131         163 PTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKII-AEGTPEELKEK  227 (293)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEE-EeCCHHHHHHh
Confidence            99999999999988887654   4 59999999999999999999999999997 67888887654

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=1.5e-50  Score=361.98  Aligned_cols=204  Identities=25%  Similarity=0.349  Sum_probs=173.0

Q ss_pred             CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------eeEEE
Q 024529           53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAV  123 (266)
Q Consensus        53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~i~~  123 (266)
                      .+.++++||++.|+ +..+++|+||+|++||+++|+||||||||||||+|+|+..|++|+|.++|+         ..+++
T Consensus         3 ~~~l~i~~v~k~yg-~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~   81 (352)
T COG3842           3 KPALEIRNVSKSFG-DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGM   81 (352)
T ss_pred             CceEEEEeeeeecC-CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccce
Confidence            35799999999995 678999999999999999999999999999999999999999999999885         36999


Q ss_pred             EeccccCCCCCCCcHHHHHHHhC---CCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 024529          124 FSQHHVDGLDLSSNPLLYMMRCF---PGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII  196 (266)
Q Consensus       124 ~~q~~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll  196 (266)
                      +||+...  ....++.+++....   ...    ..+++.++|+.+++.+ ..++++.+|||||+|||+|||||+.+|++|
T Consensus        82 VFQ~YAL--FPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~-~~~R~p~qLSGGQqQRVALARAL~~~P~vL  158 (352)
T COG3842          82 VFQSYAL--FPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEG-FADRKPHQLSGGQQQRVALARALVPEPKVL  158 (352)
T ss_pred             eecCccc--CCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchh-hhhhChhhhChHHHHHHHHHHHhhcCcchh
Confidence            9999743  23344544433211   111    2357899999999985 677899999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHh----hcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          197 LLDEPSNHLDLDAVEALIQGLV----LFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       197 lLDEPt~~LD~~~~~~l~~~l~----~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      |||||+|+||..-+.++...++    +.+.|.|+||||.+++..++|||.+|++|++. -.|+++++..
T Consensus       159 LLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~-Q~gtP~eiY~  226 (352)
T COG3842         159 LLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIE-QVGTPEEIYE  226 (352)
T ss_pred             hhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCcee-ecCCHHHHhh
Confidence            9999999999988777766654    45779999999999999999999999999996 4688877643

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=100.00  E-value=2e-49  Score=354.45  Aligned_cols=204  Identities=24%  Similarity=0.360  Sum_probs=172.5

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe----------eeEEE
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAV  123 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~i~~  123 (266)
                      ++|+++||++.|+ +..+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+++.          ..+||
T Consensus         6 ~~i~i~~l~k~~~-~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~   84 (306)
T PRK13537          6 APIDFRNVEKRYG-DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGV   84 (306)
T ss_pred             ceEEEEeEEEEEC-CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEE
Confidence            5799999999995 467999999999999999999999999999999999999999999998764          35999


Q ss_pred             EeccccCCCCCCCcHHHHHH--HhCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 024529          124 FSQHHVDGLDLSSNPLLYMM--RCFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIIL  197 (266)
Q Consensus       124 ~~q~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll  197 (266)
                      ++|++..  ....+..+++.  ....+..    ..++.++++.+++.+ ..++++++||||||||++||+||+.+|++||
T Consensus        85 v~q~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~la~aL~~~P~lll  161 (306)
T PRK13537         85 VPQFDNL--DPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLEN-KADAKVGELSGGMKRRLTLARALVNDPDVLV  161 (306)
T ss_pred             EeccCcC--CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-HhcCchhhCCHHHHHHHHHHHHHhCCCCEEE
Confidence            9998642  22234444432  1111222    345678899999974 5678899999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHHH
Q 024529          198 LDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM  262 (266)
Q Consensus       198 LDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~  262 (266)
                      |||||+|||+.++..+++.+++.   +.|||++||+++++..+||+|++|++|+++ +.|+++++.+.
T Consensus       162 LDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~-~~g~~~~l~~~  228 (306)
T PRK13537        162 LDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKI-AEGAPHALIES  228 (306)
T ss_pred             EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EECCHHHHHhc
Confidence            99999999999999998888764   569999999999999999999999999996 68999887543

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=100.00  E-value=6.3e-49  Score=382.27  Aligned_cols=208  Identities=31%  Similarity=0.578  Sum_probs=180.0

Q ss_pred             CCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCC
Q 024529           52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDG  131 (266)
Q Consensus        52 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~  131 (266)
                      +.++|+++||++.|+ ++.+|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.+.....++|++|+.. .
T Consensus       316 ~~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~-~  393 (635)
T PRK11147        316 GKIVFEMENVNYQID-GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRA-E  393 (635)
T ss_pred             CCceEEEeeeEEEEC-CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCccc-c
Confidence            466899999999995 45699999999999999999999999999999999999999999999855568999999752 2


Q ss_pred             CCCCCcHHHHHHHhCCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCH
Q 024529          132 LDLSSNPLLYMMRCFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL  207 (266)
Q Consensus       132 ~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~  207 (266)
                      +....++..++......    .....+.++++.+++.....++++++|||||||||+|||||+.+|++|||||||||||+
T Consensus       394 l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~  473 (635)
T PRK11147        394 LDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDV  473 (635)
T ss_pred             cCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence            33344555555332111    11456788899999965456789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCEEEEEecCHHHHHhhcCEEEEEe-CCeEEecCCChhHHHH
Q 024529          208 DAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVS-EGKATPFHGTFHDYKK  261 (266)
Q Consensus       208 ~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l~-~G~i~~~~g~~~~~~~  261 (266)
                      .+...+.+.+.++++|||+||||++++..+||++++|+ +|++..|.|+|++|.+
T Consensus       474 ~~~~~l~~~l~~~~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~  528 (635)
T PRK11147        474 ETLELLEELLDSYQGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ  528 (635)
T ss_pred             HHHHHHHHHHHhCCCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence            99999999999988899999999999999999999998 8999999999999954

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.1e-49  Score=354.62  Aligned_cols=202  Identities=24%  Similarity=0.365  Sum_probs=172.0

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------eeEEEE
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVF  124 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~i~~~  124 (266)
                      .+|+++||++.|++.. +++++||+|+.||+++|+||||||||||||+|+|+++|++|+|+++++         ..++++
T Consensus         2 ~~i~l~~v~K~yg~~~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamV   80 (338)
T COG3839           2 AELELKNVRKSFGSFE-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMV   80 (338)
T ss_pred             cEEEEeeeEEEcCCce-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEE
Confidence            3689999999995433 899999999999999999999999999999999999999999999885         369999


Q ss_pred             eccccCCCCCCCcHHHHHHHhC--C----CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEE
Q 024529          125 SQHHVDGLDLSSNPLLYMMRCF--P----GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILL  198 (266)
Q Consensus       125 ~q~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllL  198 (266)
                      ||+..  ++...++.+++....  .    ...++++.++++.+++.+ +.++++.+|||||||||+|||||+.+|+++||
T Consensus        81 FQ~yA--LyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~-lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~  157 (338)
T COG3839          81 FQNYA--LYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEH-LLNRKPLQLSGGQRQRVALARALVRKPKVFLL  157 (338)
T ss_pred             eCCcc--ccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChh-HHhcCcccCChhhHHHHHHHHHHhcCCCEEEe
Confidence            99975  344556666654221  1    123577899999999975 56788999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          199 DEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       199 DEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      |||+|+||...+..+...+++    .+.|+|+||||..++..++|||.+|++|++.. .|++.++.
T Consensus       158 DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q-~g~p~ely  222 (338)
T COG3839         158 DEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQ-VGTPLELY  222 (338)
T ss_pred             cCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeee-cCChHHHh
Confidence            999999999988777666654    46799999999999999999999999999974 56666654

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=100.00  E-value=4.7e-49  Score=356.19  Aligned_cols=205  Identities=25%  Similarity=0.350  Sum_probs=172.7

Q ss_pred             CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe----------eeEE
Q 024529           53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIA  122 (266)
Q Consensus        53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~i~  122 (266)
                      .++|+++||++.|+ +..+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.          ..++
T Consensus        39 ~~~i~i~nl~k~y~-~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig  117 (340)
T PRK13536         39 TVAIDLAGVSKSYG-DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIG  117 (340)
T ss_pred             ceeEEEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEE
Confidence            45799999999995 556999999999999999999999999999999999999999999998774          3599


Q ss_pred             EEeccccCCCCCCCcHHHHHH--HhCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 024529          123 VFSQHHVDGLDLSSNPLLYMM--RCFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII  196 (266)
Q Consensus       123 ~~~q~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll  196 (266)
                      |++|++...  ...+..+++.  .......    .+.+.++++.+++.+ ..++++.+||||||||++||+||+.+|++|
T Consensus       118 ~v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~-~~~~~~~~LS~G~kqrv~lA~aL~~~P~lL  194 (340)
T PRK13536        118 VVPQFDNLD--LEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES-KADARVSDLSGGMKRRLTLARALINDPQLL  194 (340)
T ss_pred             EEeCCccCC--CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-hhCCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            999986422  2233444332  1111221    345667899999974 567889999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHHH
Q 024529          197 LLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM  262 (266)
Q Consensus       197 lLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~  262 (266)
                      ||||||+|||+.++.++++.|.++   +.|||++||+++++..+||+|++|++|+++ +.|+.+++.+.
T Consensus       195 iLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~-~~g~~~~l~~~  262 (340)
T PRK13536        195 ILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKI-AEGRPHALIDE  262 (340)
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHhh
Confidence            999999999999999998888764   579999999999999999999999999996 78998887543

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=100.00  E-value=6.8e-49  Score=354.95  Aligned_cols=202  Identities=23%  Similarity=0.310  Sum_probs=169.5

Q ss_pred             cEEEEeeEEEcCC---CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-------------
Q 024529           55 IISFSDASFGYPG---GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------  118 (266)
Q Consensus        55 ~l~~~~l~~~y~~---~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------  118 (266)
                      ||+++|+++.|++   ...+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.             
T Consensus         1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~   80 (343)
T TIGR02314         1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA   80 (343)
T ss_pred             CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence            5899999999953   236899999999999999999999999999999999999999999998764             


Q ss_pred             -eeEEEEeccccCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHcc
Q 024529          119 -VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK  191 (266)
Q Consensus       119 -~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~  191 (266)
                       ..++|++|++.  +....+..+++...  ....    ..+++.++++.+|+.+ ..++++.+|||||||||+|||||+.
T Consensus        81 r~~Ig~v~Q~~~--l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~-~~~~~~~~LSgGqkQRV~IARAL~~  157 (343)
T TIGR02314        81 RRQIGMIFQHFN--LLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGD-KHDSYPSNLSGGQKQRVAIARALAS  157 (343)
T ss_pred             hcCEEEEECCcc--ccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-hhhCChhhCCHHHHHHHHHHHHHHh
Confidence             25999999863  22233444443221  1111    2346788999999974 5678899999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          192 KPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      +|++|||||||++||+.+...+++.|++.    +.|||+|||+++.+..+||++++|++|+++ ..|+++++.
T Consensus       158 ~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv-~~g~~~~v~  229 (343)
T TIGR02314       158 NPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELI-EQGTVSEIF  229 (343)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence            99999999999999999999988877653    679999999999999999999999999997 578877663

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=100.00  E-value=6.8e-49  Score=338.64  Aligned_cols=200  Identities=26%  Similarity=0.350  Sum_probs=166.4

Q ss_pred             EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe--------------eeE
Q 024529           56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------VRI  121 (266)
Q Consensus        56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------~~i  121 (266)
                      |+++|+++.|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.              ..+
T Consensus         1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i   79 (235)
T cd03261           1 IELRGLTKSFG-GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRM   79 (235)
T ss_pred             CeEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcce
Confidence            47899999995 456999999999999999999999999999999999999999999988663              248


Q ss_pred             EEEeccccCCCCCCCcHHHHHHHh---CCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 024529          122 AVFSQHHVDGLDLSSNPLLYMMRC---FPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH  194 (266)
Q Consensus       122 ~~~~q~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~  194 (266)
                      +|++|++..  ....+..+++...   .....    .+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|+
T Consensus        80 ~~v~q~~~~--~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~ia~al~~~p~  156 (235)
T cd03261          80 GMLFQSGAL--FDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRG-AEDLYPAELSGGMKKRVALARALALDPE  156 (235)
T ss_pred             EEEccCccc--CCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            999998632  2223444443211   11111    345677899999975 4578889999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          195 IILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       195 lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      +|||||||++||+.++..+.+.|.+.    +.|||+||||++++..+||++++|++|+++ +.|+++++.
T Consensus       157 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~  225 (235)
T cd03261         157 LLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIV-AEGTPEELR  225 (235)
T ss_pred             EEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEE-EecCHHHHc
Confidence            99999999999999999988887653    579999999999999999999999999996 678877764

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=100.00  E-value=5.5e-49  Score=334.99  Aligned_cols=192  Identities=30%  Similarity=0.443  Sum_probs=160.8

Q ss_pred             cEEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe--------------e
Q 024529           55 IISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------V  119 (266)
Q Consensus        55 ~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------~  119 (266)
                      ||+++|++++|+++ +.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.              .
T Consensus         1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~   80 (216)
T TIGR00960         1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR   80 (216)
T ss_pred             CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence            58899999999643 46999999999999999999999999999999999999999999998763              2


Q ss_pred             eEEEEeccccCCCCCCCcHHHHHHHh--CCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCC
Q 024529          120 RIAVFSQHHVDGLDLSSNPLLYMMRC--FPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP  193 (266)
Q Consensus       120 ~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p  193 (266)
                      .++|++|++..  ....+..+++...  ...    ...+++.++++.+++.+ ..++++.+||||||||++|||||+.+|
T Consensus        81 ~i~~~~q~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~laral~~~p  157 (216)
T TIGR00960        81 HIGMVFQDHRL--LSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEG-KAHALPMQLSGGEQQRVAIARAIVHKP  157 (216)
T ss_pred             hceEEecCccc--cccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-hhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence            48999998632  2223444433211  111    12456788999999974 457888999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeE
Q 024529          194 HIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKA  249 (266)
Q Consensus       194 ~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i  249 (266)
                      ++|||||||++||+.++..+.+.|.+.   +.|||+||||++++..+||++++|++|++
T Consensus       158 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i  216 (216)
T TIGR00960       158 PLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL  216 (216)
T ss_pred             CEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            999999999999999999998888754   57999999999999999999999999974

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.1e-48  Score=369.23  Aligned_cols=209  Identities=31%  Similarity=0.579  Sum_probs=180.1

Q ss_pred             CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCC
Q 024529           53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGL  132 (266)
Q Consensus        53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~  132 (266)
                      .++|+++|+++.|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+.++..++|++|++...+
T Consensus       317 ~~~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~  395 (530)
T PRK15064        317 RNALEVENLTKGFD-NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDF  395 (530)
T ss_pred             CceEEEEeeEEeeC-CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccC
Confidence            46899999999995 45689999999999999999999999999999999999999999999998888999999853222


Q ss_pred             CCCCcHHHHHHHhC-CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH
Q 024529          133 DLSSNPLLYMMRCF-PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVE  211 (266)
Q Consensus       133 ~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~  211 (266)
                      ....+...++.... .....+++.++++.+++.....++++.+||||||||++|||||+.+|++|||||||+|||+.++.
T Consensus       396 ~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~  475 (530)
T PRK15064        396 ENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIE  475 (530)
T ss_pred             CCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHH
Confidence            22234444432211 12235668889999999534567899999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHHH
Q 024529          212 ALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM  262 (266)
Q Consensus       212 ~l~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~  262 (266)
                      .+.+.|.++++|||+||||++++..+||++++|++|+++.+.|+++++.+.
T Consensus       476 ~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~  526 (530)
T PRK15064        476 SLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS  526 (530)
T ss_pred             HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence            999999998889999999999999999999999999997688999988654

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=100.00  E-value=9.5e-49  Score=349.86  Aligned_cols=204  Identities=25%  Similarity=0.357  Sum_probs=170.5

Q ss_pred             CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe----------eeEE
Q 024529           53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIA  122 (266)
Q Consensus        53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~i~  122 (266)
                      +.+|+++|+++.|+ +..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.          ..++
T Consensus         2 ~~~i~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~   80 (303)
T TIGR01288         2 NVAIDLVGVSKSYG-DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIG   80 (303)
T ss_pred             CcEEEEEeEEEEeC-CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEE
Confidence            35799999999995 456999999999999999999999999999999999999999999998763          3589


Q ss_pred             EEeccccCCCCCCCcHHHHHH--HhCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 024529          123 VFSQHHVDGLDLSSNPLLYMM--RCFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII  196 (266)
Q Consensus       123 ~~~q~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll  196 (266)
                      |++|++..  ....+..+++.  .......    .+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|
T Consensus        81 ~v~q~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~~LSgG~~qrv~la~al~~~p~ll  157 (303)
T TIGR01288        81 VVPQFDNL--DPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES-KADVRVALLSGGMKRRLTLARALINDPQLL  157 (303)
T ss_pred             EEeccccC--CcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChh-HhcCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            99998632  22234444432  1111122    234667899999974 467889999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          197 LLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       197 lLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      ||||||+|||+.++..+.+.|.++   +.|||++|||++++..+||++++|++|+++ +.|+.+++..
T Consensus       158 lLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~  224 (303)
T TIGR01288       158 ILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKI-AEGRPHALID  224 (303)
T ss_pred             EEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence            999999999999999998888764   579999999999999999999999999996 6788888754

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.9e-49  Score=342.49  Aligned_cols=202  Identities=24%  Similarity=0.336  Sum_probs=171.4

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------eeEE
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRIA  122 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~i~  122 (266)
                      +|.++++++.| +...+++||||+|+.||.+|++||||||||||||+|+|++.|++|.|.++++            .+||
T Consensus         2 ~i~i~~~~~~~-~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VG   80 (345)
T COG1118           2 SIRINNVKKRF-GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVG   80 (345)
T ss_pred             ceeehhhhhhc-ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhccee
Confidence            68899999999 4567899999999999999999999999999999999999999999998876            3699


Q ss_pred             EEeccccCCCCCCCcHHHHHHHhC------C--CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 024529          123 VFSQHHVDGLDLSSNPLLYMMRCF------P--GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH  194 (266)
Q Consensus       123 ~~~q~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~  194 (266)
                      |++|+..  +....++.+++....      +  .....++.++|+.+.+. .+.++++.+|||||||||||||||+..|+
T Consensus        81 fvFQ~YA--LF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~-~la~ryP~QLSGGQrQRVALARALA~eP~  157 (345)
T COG1118          81 FVFQHYA--LFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLE-GLADRYPAQLSGGQRQRVALARALAVEPK  157 (345)
T ss_pred             EEEechh--hcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhccc-chhhcCchhcChHHHHHHHHHHHhhcCCC
Confidence            9999974  223345555543221      1  12356788899999997 46789999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHh----hcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          195 IILLDEPSNHLDLDAVEALIQGLV----LFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       195 lllLDEPt~~LD~~~~~~l~~~l~----~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      +||||||+++||..-+..+...|.    +++.|.++||||.+++.++||||++|++|+|. -.|+++++..
T Consensus       158 vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ie-qvg~p~ev~~  227 (345)
T COG1118         158 VLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIE-QVGPPDEVYD  227 (345)
T ss_pred             eEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeee-eeCCHHHHhc
Confidence            999999999999988777766654    45789999999999999999999999999996 4688877643

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=100.00  E-value=3.4e-49  Score=319.95  Aligned_cols=195  Identities=27%  Similarity=0.423  Sum_probs=165.8

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe--------------ee
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------VR  120 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------~~  120 (266)
                      ||+++||++.|++++.+|+||||+|++||++-|+||||||||||||+|++..+|++|+|++++.              .+
T Consensus         1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~   80 (223)
T COG2884           1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ   80 (223)
T ss_pred             CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence            6899999999998877999999999999999999999999999999999999999999998764              36


Q ss_pred             EEEEeccccCCCCCCCcHHHHHHHhC------CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 024529          121 IAVFSQHHVDGLDLSSNPLLYMMRCF------PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH  194 (266)
Q Consensus       121 i~~~~q~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~  194 (266)
                      ||++||++..  -...+++++.....      +..-.+++.++|+.+|+.+. .+.-+.+|||||+|||+||||++.+|+
T Consensus        81 IGvVFQD~rL--L~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k-~~~lP~~LSGGEQQRvaIARAiV~~P~  157 (223)
T COG2884          81 IGVVFQDFRL--LPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHK-ARALPSQLSGGEQQRVAIARAIVNQPA  157 (223)
T ss_pred             eeeEeeeccc--cccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchh-hhcCccccCchHHHHHHHHHHHccCCC
Confidence            9999998632  22334444432211      11235678899999999864 456678999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEec
Q 024529          195 IILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPF  252 (266)
Q Consensus       195 lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~  252 (266)
                      +||.||||.+|||....++++.+.+   .|.||||+|||.+.+..+-.|++.+++|+++..
T Consensus       158 vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d  218 (223)
T COG2884         158 VLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRD  218 (223)
T ss_pred             eEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEec
Confidence            9999999999999998888777655   467999999999999999999999999999743

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=9.4e-49  Score=331.11  Aligned_cols=192  Identities=22%  Similarity=0.379  Sum_probs=160.9

Q ss_pred             EEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee--------eEEEEeccc
Q 024529           57 SFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV--------RIAVFSQHH  128 (266)
Q Consensus        57 ~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~--------~i~~~~q~~  128 (266)
                      +++|+++.|++++.+|+++||+|++|++++|+|||||||||||++|+|+++|++|+|.+++..        .++|++|++
T Consensus         1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~   80 (205)
T cd03226           1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDV   80 (205)
T ss_pred             CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecCh
Confidence            368999999542579999999999999999999999999999999999999999999988743        589999985


Q ss_pred             cCCCCCCCcHHHHHHHh--CCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q 024529          129 VDGLDLSSNPLLYMMRC--FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD  206 (266)
Q Consensus       129 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD  206 (266)
                      ...+ ...+..+++...  .......++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||||++||
T Consensus        81 ~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD  158 (205)
T cd03226          81 DYQL-FTDSVREELLLGLKELDAGNEQAETVLKDLDLYA-LKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD  158 (205)
T ss_pred             hhhh-hhccHHHHHhhhhhhcCccHHHHHHHHHHcCCch-hcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence            2111 123444444321  11223457889999999975 4678889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529          207 LDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKAT  250 (266)
Q Consensus       207 ~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~  250 (266)
                      +.++..+.+.|.++   +.|||++|||++++..+||++++|++|+++
T Consensus       159 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv  205 (205)
T cd03226         159 YKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV  205 (205)
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence            99999998888654   569999999999999999999999999873

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.2e-48  Score=353.86  Aligned_cols=202  Identities=24%  Similarity=0.318  Sum_probs=170.9

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------eeEEEEe
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS  125 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~i~~~~  125 (266)
                      +|+++|++++|+++..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.+++.         ..++|++
T Consensus         3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~   82 (356)
T PRK11650          3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVF   82 (356)
T ss_pred             EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence            6899999999943456999999999999999999999999999999999999999999998874         3599999


Q ss_pred             ccccCCCCCCCcHHHHHHHhC--CCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 024529          126 QHHVDGLDLSSNPLLYMMRCF--PGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD  199 (266)
Q Consensus       126 q~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLD  199 (266)
                      |++..  ....++.+++....  ...    ..+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++||||
T Consensus        83 Q~~~l--fp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~LSgGq~QRvalARAL~~~P~llLLD  159 (356)
T PRK11650         83 QNYAL--YPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEP-LLDRKPRELSGGQRQRVAMGRAIVREPAVFLFD  159 (356)
T ss_pred             CCccc--cCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChh-HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            98642  23344555443211  111    1356788999999974 678899999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          200 EPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       200 EPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      |||++||+.++..+.+.|++    .+.|+|+||||.+++..+||++++|++|+++ ..|+++++.
T Consensus       160 EP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~-~~g~~~~~~  223 (356)
T PRK11650        160 EPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAE-QIGTPVEVY  223 (356)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEE-EECCHHHHH
Confidence            99999999999988887754    3679999999999999999999999999997 568887764

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=100.00  E-value=3.2e-48  Score=338.63  Aligned_cols=199  Identities=26%  Similarity=0.307  Sum_probs=167.0

Q ss_pred             CCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------eeEEEEe
Q 024529           52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------VRIAVFS  125 (266)
Q Consensus        52 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------~~i~~~~  125 (266)
                      ..++|+++|++++|+ ++.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.      ..++|++
T Consensus         9 ~~~~l~i~~l~~~~~-~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~   87 (257)
T PRK11247          9 QGTPLLLNAVSKRYG-ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMF   87 (257)
T ss_pred             CCCcEEEEEEEEEEC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEe
Confidence            346799999999995 457999999999999999999999999999999999999999999988764      2589999


Q ss_pred             ccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCC
Q 024529          126 QHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHL  205 (266)
Q Consensus       126 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~L  205 (266)
                      |++.  +....+..+++.........+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||||+||
T Consensus        88 q~~~--l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~L  164 (257)
T PRK11247         88 QDAR--LLPWKKVIDNVGLGLKGQWRDAALQALAAVGLAD-RANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGAL  164 (257)
T ss_pred             cCcc--CCCCCcHHHHHHhcccchHHHHHHHHHHHcCChh-HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Confidence            9863  2222355555432221223456788999999974 457888999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCC
Q 024529          206 DLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGT  255 (266)
Q Consensus       206 D~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~  255 (266)
                      |+.++..+.+.|.+.    +.|||+||||++++..+||++++|++|+++ ..++
T Consensus       165 D~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~-~~~~  217 (257)
T PRK11247        165 DALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIG-LDLT  217 (257)
T ss_pred             CHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-eecc
Confidence            999999988877643    579999999999999999999999999986 3443

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=100.00  E-value=1.3e-48  Score=332.08  Aligned_cols=191  Identities=28%  Similarity=0.390  Sum_probs=160.2

Q ss_pred             EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------eeEEEEec
Q 024529           56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFSQ  126 (266)
Q Consensus        56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~i~~~~q  126 (266)
                      |+++|+++.|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.         ..++|++|
T Consensus         1 l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q   79 (213)
T cd03259           1 LELKGLSKTYG-SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQ   79 (213)
T ss_pred             CeeeeeEEEeC-CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcC
Confidence            47899999995 457999999999999999999999999999999999999999999998764         25899999


Q ss_pred             cccCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 024529          127 HHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE  200 (266)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDE  200 (266)
                      ++..  ....+..+++..  .....    ..+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||
T Consensus        80 ~~~~--~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDE  156 (213)
T cd03259          80 DYAL--FPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEG-LLNRYPHELSGGQQQRVALARALAREPSLLLLDE  156 (213)
T ss_pred             chhh--ccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChh-hhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            8632  222344444321  11111    2345778899999974 4578889999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529          201 PSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKAT  250 (266)
Q Consensus       201 Pt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~  250 (266)
                      ||++||+.++..+.+.|.+.    +.|||++|||++++..+||++++|++|+++
T Consensus       157 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~  210 (213)
T cd03259         157 PLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIV  210 (213)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEE
Confidence            99999999999998888653    569999999999999999999999999986

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=100.00  E-value=2e-48  Score=332.52  Aligned_cols=198  Identities=22%  Similarity=0.318  Sum_probs=164.8

Q ss_pred             EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe----------eeEEEEe
Q 024529           56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVFS  125 (266)
Q Consensus        56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~i~~~~  125 (266)
                      |+++|+++.|+ ++.+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++.          ..++|++
T Consensus         1 i~~~~~~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~   79 (220)
T cd03265           1 IEVENLVKKYG-DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVF   79 (220)
T ss_pred             CEEEEEEEEEC-CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEec
Confidence            57899999995 457999999999999999999999999999999999999999999998763          2589999


Q ss_pred             ccccCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 024529          126 QHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD  199 (266)
Q Consensus       126 q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLD  199 (266)
                      |++..  ....+..+++..  .....    ..+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++||||
T Consensus        80 q~~~~--~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qr~~la~al~~~p~llllD  156 (220)
T cd03265          80 QDLSV--DDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLE-AADRLVKTYSGGMRRRLEIARSLVHRPEVLFLD  156 (220)
T ss_pred             CCccc--cccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            98632  222344433321  11111    2346788999999974 467889999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhH
Q 024529          200 EPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHD  258 (266)
Q Consensus       200 EPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~  258 (266)
                      |||++||+.++..+.+.|.+.    +.|||++|||++++..+||++++|++|+++ ..|+.++
T Consensus       157 EPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~  218 (220)
T cd03265         157 EPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRII-AEGTPEE  218 (220)
T ss_pred             CCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEE-EeCChHH
Confidence            999999999999988877652    569999999999999999999999999996 5677655

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=100.00  E-value=9e-49  Score=369.49  Aligned_cols=206  Identities=34%  Similarity=0.597  Sum_probs=179.3

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCC
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD  133 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~  133 (266)
                      .+|+++|+++.| +++.+|+++||+|.+|+++||||+||||||||||+|+|...|++|+|......+++|++|++.... 
T Consensus         2 ~~i~~~~ls~~~-g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~-   79 (530)
T COG0488           2 SMITLENLSLAY-GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDP-   79 (530)
T ss_pred             ceEEEeeeEEee-CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCC-
Confidence            479999999999 567899999999999999999999999999999999999999999999998889999999975322 


Q ss_pred             CCCcHHHHHHHhC------------------------------------CCCcHHHHHHHHHhcCCCcccccCCCCCCCh
Q 024529          134 LSSNPLLYMMRCF------------------------------------PGVPEQKLRAHLGSFGVTGNLALQPMYTLSG  177 (266)
Q Consensus       134 ~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg  177 (266)
                       ..++...+....                                    ....+.++..++..+|+...  ++++++|||
T Consensus        80 -~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~--~~~~~~LSG  156 (530)
T COG0488          80 -EKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE--DRPVSSLSG  156 (530)
T ss_pred             -CccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc--cCchhhcCH
Confidence             222222211100                                    00123567788889999764  789999999


Q ss_pred             HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChh
Q 024529          178 GQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFH  257 (266)
Q Consensus       178 GqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~  257 (266)
                      |||.||+||+||+.+|++|||||||||||..++.|+.+.|+++.+|+|+||||++|+.++|++|+.++.|++..|.|+|+
T Consensus       157 G~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny~  236 (530)
T COG0488         157 GWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYS  236 (530)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEEecCCceeEecCCHH
Confidence            99999999999999999999999999999999999999999998899999999999999999999999999999999999


Q ss_pred             HHHHHHh
Q 024529          258 DYKKMLQ  264 (266)
Q Consensus       258 ~~~~~~~  264 (266)
                      .|.++..
T Consensus       237 ~~~~~r~  243 (530)
T COG0488         237 SYLEQKA  243 (530)
T ss_pred             HHHHHHH
Confidence            9977654

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.9e-49  Score=324.10  Aligned_cols=206  Identities=20%  Similarity=0.303  Sum_probs=170.6

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe----------eeEEEE
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVF  124 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~i~~~  124 (266)
                      ||++.+++++|+.-..+++||||+++.|+++||+|||||||||+||+|++++.|++|.|+.++.          ..||.+
T Consensus         1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl   80 (245)
T COG4555           1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVL   80 (245)
T ss_pred             CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhccee
Confidence            6899999999965445899999999999999999999999999999999999999999998763          357877


Q ss_pred             eccccCCCCCCCcHHH---HHHHhC---CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEE
Q 024529          125 SQHHVDGLDLSSNPLL---YMMRCF---PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILL  198 (266)
Q Consensus       125 ~q~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllL  198 (266)
                      +.+.  +++...+..+   ++...+   ....+.++.++.+.+++.+ ..++++..||.||||||+|||||+++|++++|
T Consensus        81 ~~e~--glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~-~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vl  157 (245)
T COG4555          81 FGER--GLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLE-YLDRRVGEFSTGMKQKVAIARALVHDPSILVL  157 (245)
T ss_pred             cCCc--ChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHH-HHHHHHhhhchhhHHHHHHHHHHhcCCCeEEE
Confidence            7432  2222233322   232222   1223567888999999975 56789999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHHHHh
Q 024529          199 DEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQ  264 (266)
Q Consensus       199 DEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~  264 (266)
                      ||||||||..+...+.+.+++   .+.+||++||++++++.+||+++++++|+++ +.|+.+.+.....
T Consensus       158 DEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv-~~gs~~~l~~r~~  225 (245)
T COG4555         158 DEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVV-LEGSIEALDARTV  225 (245)
T ss_pred             cCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEE-EcCCHHHHHHHHh
Confidence            999999999998888777654   4679999999999999999999999999997 7899888765543

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=100.00  E-value=3.5e-48  Score=335.09  Aligned_cols=201  Identities=26%  Similarity=0.320  Sum_probs=167.1

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------eeEEEEe
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS  125 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~i~~~~  125 (266)
                      +|+++|+++.|+ +..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.         ..++|++
T Consensus         2 ~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~   80 (239)
T cd03296           2 SIEVRNVSKRFG-DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVF   80 (239)
T ss_pred             EEEEEeEEEEEC-CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEe
Confidence            489999999995 456999999999999999999999999999999999999999999998763         2489999


Q ss_pred             ccccCCCCCCCcHHHHHHHh---CC-----CC--cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 024529          126 QHHVDGLDLSSNPLLYMMRC---FP-----GV--PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI  195 (266)
Q Consensus       126 q~~~~~~~~~~~~~~~~~~~---~~-----~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~l  195 (266)
                      |++..  ....+..+++...   ..     ..  ..+++.++++.+++.+ ..++++.+|||||+||++|||||+.+|++
T Consensus        81 q~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~la~al~~~p~l  157 (239)
T cd03296          81 QHYAL--FRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDW-LADRYPAQLSGGQRQRVALARALAVEPKV  157 (239)
T ss_pred             cCCcc--cCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChh-hhhcChhhCCHHHHHHHHHHHHHhcCCCE
Confidence            98632  2223444433211   10     11  1245678899999964 56788899999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          196 ILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       196 llLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      |||||||++||+.++..+.+.|.+.    +.|||++|||++++..+||++++|++|+++ ..|+.+++.
T Consensus       158 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~  225 (239)
T cd03296         158 LLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIE-QVGTPDEVY  225 (239)
T ss_pred             EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEE-EecCHHHHh
Confidence            9999999999999999988887653    569999999999999999999999999996 578877764

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=100.00  E-value=4.6e-48  Score=345.13  Aligned_cols=203  Identities=22%  Similarity=0.350  Sum_probs=172.3

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe----------eeEEEE
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVF  124 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~i~~~  124 (266)
                      +++++|++++|+ +..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++.          ..++|+
T Consensus         2 ~l~~~~l~~~~~-~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~   80 (301)
T TIGR03522         2 SIRVSSLTKLYG-TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYL   80 (301)
T ss_pred             EEEEEEEEEEEC-CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEe
Confidence            489999999995 567999999999999999999999999999999999999999999998774          258999


Q ss_pred             eccccCCCCCCCcHHHHHH--HhCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEE
Q 024529          125 SQHHVDGLDLSSNPLLYMM--RCFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILL  198 (266)
Q Consensus       125 ~q~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllL  198 (266)
                      +|++..  ....+..+++.  ....+..    .+++.++++.+++.+ ..+++++.||||||||++|||||+.+|++|||
T Consensus        81 ~q~~~l--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrv~la~al~~~p~lliL  157 (301)
T TIGR03522        81 PEHNPL--YLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRP-EQHKKIGQLSKGYRQRVGLAQALIHDPKVLIL  157 (301)
T ss_pred             cCCCCC--CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch-HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            998642  22234444432  1111222    356788999999975 46788999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHHH
Q 024529          199 DEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM  262 (266)
Q Consensus       199 DEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~  262 (266)
                      ||||+|||+.+++.+++.++++  +.|||++||+++++..+||++++|++|+++ +.|+.+++.+.
T Consensus       158 DEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~~  222 (301)
T TIGR03522       158 DEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIV-ADKKLDELSAA  222 (301)
T ss_pred             cCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHHHh
Confidence            9999999999999999888765  469999999999999999999999999997 78999988653

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4e-48  Score=351.32  Aligned_cols=203  Identities=24%  Similarity=0.375  Sum_probs=172.1

Q ss_pred             CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------eeEEE
Q 024529           53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAV  123 (266)
Q Consensus        53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~i~~  123 (266)
                      .++|+++|+++.|+ +..+|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.+++.         ..++|
T Consensus         4 ~~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~   82 (351)
T PRK11432          4 KNFVVLKNITKRFG-SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICM   82 (351)
T ss_pred             CcEEEEEeEEEEEC-CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence            35799999999995 456899999999999999999999999999999999999999999998874         36999


Q ss_pred             EeccccCCCCCCCcHHHHHHHhC--CCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 024529          124 FSQHHVDGLDLSSNPLLYMMRCF--PGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIIL  197 (266)
Q Consensus       124 ~~q~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll  197 (266)
                      ++|++..  ....++.+++....  ...    ..+++.++++.+++.+ +.++++.+|||||||||+|||||+.+|++||
T Consensus        83 vfQ~~~l--fp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~-~~~r~~~~LSgGq~QRVaLARaL~~~P~lLL  159 (351)
T PRK11432         83 VFQSYAL--FPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAG-FEDRYVDQISGGQQQRVALARALILKPKVLL  159 (351)
T ss_pred             EeCCccc--CCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence            9998642  22334554443211  111    2456788999999974 5678899999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          198 LDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       198 LDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      |||||++||+..+.++.+.|++    .+.|+|+||||.+++..+||++++|++|++. ..|+++++.
T Consensus       160 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~-~~g~~~~~~  225 (351)
T PRK11432        160 FDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIM-QIGSPQELY  225 (351)
T ss_pred             EcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence            9999999999999988887764    3679999999999999999999999999997 568887764

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=4.8e-48  Score=351.20  Aligned_cols=203  Identities=23%  Similarity=0.351  Sum_probs=171.8

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------eeEEEE
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVF  124 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~i~~~  124 (266)
                      ++|+++|++++|+ +..+|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.++++         ..++|+
T Consensus         3 ~~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v   81 (353)
T TIGR03265         3 PYLSIDNIRKRFG-AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIV   81 (353)
T ss_pred             cEEEEEEEEEEeC-CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence            4799999999995 456899999999999999999999999999999999999999999998874         359999


Q ss_pred             eccccCCCCCCCcHHHHHHHhC--CCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEE
Q 024529          125 SQHHVDGLDLSSNPLLYMMRCF--PGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILL  198 (266)
Q Consensus       125 ~q~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllL  198 (266)
                      +|++..  ....++.+++....  ...    ...++.++++.+++.+ +.++++.+|||||||||+|||||+.+|++|||
T Consensus        82 ~Q~~~l--fp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~-~~~~~~~~LSgGq~QRvaLARaL~~~P~llLL  158 (353)
T TIGR03265        82 FQSYAL--FPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPG-SERKYPGQLSGGQQQRVALARALATSPGLLLL  158 (353)
T ss_pred             eCCccc--CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCc-hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            998642  22334444443211  111    2456888999999975 57789999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          199 DEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       199 DEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      ||||++||+.++..+.+.|++    .+.|+|+||||.+++..+||++++|++|+++ ..|+++++.+
T Consensus       159 DEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~-~~g~~~~~~~  224 (353)
T TIGR03265       159 DEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIE-QVGTPQEIYR  224 (353)
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence            999999999999988887764    3679999999999999999999999999997 5688877643

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=3.9e-48  Score=335.30  Aligned_cols=202  Identities=27%  Similarity=0.389  Sum_probs=167.3

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe--------------ee
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------VR  120 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------~~  120 (266)
                      ||+++|+++.|++++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.              ..
T Consensus         1 ~l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   80 (243)
T TIGR02315         1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR   80 (243)
T ss_pred             CeEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence            4789999999952456999999999999999999999999999999999999999999998763              23


Q ss_pred             EEEEeccccCCCCCCCcHHHHHHHhC--------------CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHH
Q 024529          121 IAVFSQHHVDGLDLSSNPLLYMMRCF--------------PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFA  186 (266)
Q Consensus       121 i~~~~q~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lA  186 (266)
                      ++|++|++..  ....+..+++....              .....+++.++++.+++.. ..++++.+||||||||++||
T Consensus        81 i~~v~q~~~~--~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~la  157 (243)
T TIGR02315        81 IGMIFQHYNL--IERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLAD-KAYQRADQLSGGQQQRVAIA  157 (243)
T ss_pred             eEEEcCCCcc--cccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHh-hhcCCcccCCHHHHHHHHHH
Confidence            8999998532  22234444432110              0112346778899999964 45788899999999999999


Q ss_pred             HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          187 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       187 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      |||+.+|++|||||||++||+.++..+.+.|.+.    +.|||+||||++++..+||++++|++|+++ ..|+++++.
T Consensus       158 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~~  234 (243)
T TIGR02315       158 RALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIV-FDGAPSELD  234 (243)
T ss_pred             HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEE-ecCCHHHhC
Confidence            9999999999999999999999999888877653    569999999999999999999999999996 678877753

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=100.00  E-value=5.6e-48  Score=333.82  Aligned_cols=202  Identities=27%  Similarity=0.405  Sum_probs=167.0

Q ss_pred             EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe--------------eeE
Q 024529           56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------VRI  121 (266)
Q Consensus        56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------~~i  121 (266)
                      |+++|+++.|++++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.              ..+
T Consensus         1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i   80 (241)
T cd03256           1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI   80 (241)
T ss_pred             CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence            478999999954256999999999999999999999999999999999999999999988763              248


Q ss_pred             EEEeccccCCCCCCCcHHHHHHHhC--------------CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHH
Q 024529          122 AVFSQHHVDGLDLSSNPLLYMMRCF--------------PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAK  187 (266)
Q Consensus       122 ~~~~q~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAr  187 (266)
                      +|++|++..  ....+..+++....              .....+++.++++.+++.. ..++++.+||||||||++|||
T Consensus        81 ~~~~q~~~~--~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~  157 (241)
T cd03256          81 GMIFQQFNL--IERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLD-KAYQRADQLSGGQQQRVAIAR  157 (241)
T ss_pred             EEEcccCcc--cccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChh-hhCCCcccCCHHHHHHHHHHH
Confidence            999998632  22234444332110              0112345778899999964 567888999999999999999


Q ss_pred             HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          188 ITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       188 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      ||+.+|++|||||||++||+.++..+.+.|.+.    +.|||++|||++++..+||++++|++|+++ ..|+++++.+
T Consensus       158 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~~~  234 (241)
T cd03256         158 ALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIV-FDGPPAELTD  234 (241)
T ss_pred             HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-eecCHHHhhH
Confidence            999999999999999999999999988887653    579999999999999999999999999996 6788887743

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.5e-48  Score=342.13  Aligned_cols=205  Identities=26%  Similarity=0.377  Sum_probs=169.1

Q ss_pred             cEEEEeeEEEcCCC----CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee-----------
Q 024529           55 IISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-----------  119 (266)
Q Consensus        55 ~l~~~~l~~~y~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-----------  119 (266)
                      ||+++|+++.|+++    +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++++..           
T Consensus         1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~   80 (288)
T PRK13643          1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK   80 (288)
T ss_pred             CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence            58999999999633    258999999999999999999999999999999999999999999987631           


Q ss_pred             ----eEEEEeccccCCCCCCCcHHHHHHHh--CCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHH
Q 024529          120 ----RIAVFSQHHVDGLDLSSNPLLYMMRC--FPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT  189 (266)
Q Consensus       120 ----~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral  189 (266)
                          .++|++|++...+ +..+..+++...  ..+..    ..++.++++.+++.....++++..||||||||++|||||
T Consensus        81 ~~~~~ig~v~q~~~~~l-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL  159 (288)
T PRK13643         81 PVRKKVGVVFQFPESQL-FEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGIL  159 (288)
T ss_pred             HHHhhEEEEecCcchhc-ccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHH
Confidence                4899999863222 123444444211  11121    345778899999964456788999999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          190 FKKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       190 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      +.+|++|||||||++||+.++..+.+.|.+   .+.|||+||||++++..+||+|++|++|+++ +.|+++++..
T Consensus       160 ~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~-~~g~~~~~~~  233 (288)
T PRK13643        160 AMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHII-SCGTPSDVFQ  233 (288)
T ss_pred             HhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EECCHHHHHc
Confidence            999999999999999999999988887754   3579999999999999999999999999997 6798888643

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7.6e-48  Score=349.20  Aligned_cols=202  Identities=24%  Similarity=0.352  Sum_probs=168.4

Q ss_pred             cEEEEeeEEEcC--C-CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-------------
Q 024529           55 IISFSDASFGYP--G-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------  118 (266)
Q Consensus        55 ~l~~~~l~~~y~--~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------  118 (266)
                      ||+++|++++|+  + ...+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.             
T Consensus         1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~   80 (343)
T PRK11153          1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA   80 (343)
T ss_pred             CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence            589999999996  2 356999999999999999999999999999999999999999999998763             


Q ss_pred             -eeEEEEeccccCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHcc
Q 024529          119 -VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK  191 (266)
Q Consensus       119 -~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~  191 (266)
                       ..++|++|++.  +....+..+++...  ....    ..+++.++++.+++.+ ..++++.+||||||||++|||||+.
T Consensus        81 ~~~ig~v~q~~~--l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~LSgGq~qRv~lAraL~~  157 (343)
T PRK11153         81 RRQIGMIFQHFN--LLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSD-KADRYPAQLSGGQKQRVAIARALAS  157 (343)
T ss_pred             hcCEEEEeCCCc--cCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-hhhCChhhCCHHHHHHHHHHHHHHc
Confidence             25999999864  22223444443211  1111    1346778899999974 5678899999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          192 KPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      +|++|||||||++||+.++..+++.|++.    +.|||++|||++++..+||++++|++|+++ ..|+.+++.
T Consensus       158 ~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~-~~g~~~~~~  229 (343)
T PRK11153        158 NPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLV-EQGTVSEVF  229 (343)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence            99999999999999999999998888653    569999999999999999999999999996 567776653

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.5e-48  Score=342.44  Aligned_cols=203  Identities=26%  Similarity=0.362  Sum_probs=168.2

Q ss_pred             EEEEeeEEEcCCC----CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-------------
Q 024529           56 ISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------  118 (266)
Q Consensus        56 l~~~~l~~~y~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------  118 (266)
                      |+++|++++|++.    ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.             
T Consensus         3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~   82 (290)
T PRK13634          3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP   82 (290)
T ss_pred             EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence            8999999999642    45999999999999999999999999999999999999999999988774             


Q ss_pred             --eeEEEEeccccCCCCCCCcHHHHHHHh--CCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 024529          119 --VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF  190 (266)
Q Consensus       119 --~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~  190 (266)
                        ..++|++|++...+. ..+..+++...  .....    .+++.++++.+++.....++++.+|||||||||+|||||+
T Consensus        83 ~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~  161 (290)
T PRK13634         83 LRKKVGIVFQFPEHQLF-EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLA  161 (290)
T ss_pred             HHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence              248999998632221 23444443211  11111    2457788999999645567889999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          191 KKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       191 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      .+|++|||||||++||+.++..+++.|++.    +.|||+||||++++..+||++++|++|+++ +.|+++++.
T Consensus       162 ~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~-~~g~~~~~~  234 (290)
T PRK13634        162 MEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVF-LQGTPREIF  234 (290)
T ss_pred             cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHHh
Confidence            999999999999999999999988877643    579999999999999999999999999996 678877753

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.1e-48  Score=340.08  Aligned_cols=203  Identities=30%  Similarity=0.403  Sum_probs=169.0

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEE
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA  122 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~  122 (266)
                      ++|+++|+++.|+++..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.           ..++
T Consensus         3 ~~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~   82 (274)
T PRK13647          3 NIIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG   82 (274)
T ss_pred             ceEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence            37999999999964456999999999999999999999999999999999999999999998773           2489


Q ss_pred             EEeccccCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 024529          123 VFSQHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII  196 (266)
Q Consensus       123 ~~~q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll  196 (266)
                      |++|++...+ ...+...++...  ....    ..+++.++++.+++.+ ..++++.+|||||+||++|||||+.+|++|
T Consensus        83 ~v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgG~~qrv~laraL~~~p~ll  160 (274)
T PRK13647         83 LVFQDPDDQV-FSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWD-FRDKPPYHLSYGQKKRVAIAGVLAMDPDVI  160 (274)
T ss_pred             EEecChhhhh-ccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHH-HhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence            9999862111 223444444211  1111    1345778899999974 567889999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529          197 LLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  259 (266)
Q Consensus       197 lLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  259 (266)
                      ||||||++||+.++.++.+.+.+.   +.|||++|||++++..+||++++|++|+++ +.|+++++
T Consensus       161 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~  225 (274)
T PRK13647        161 VLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVL-AEGDKSLL  225 (274)
T ss_pred             EEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHh
Confidence            999999999999999998888654   579999999999999999999999999996 56777654

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=100.00  E-value=6.4e-48  Score=326.65  Aligned_cols=191  Identities=23%  Similarity=0.358  Sum_probs=162.1

Q ss_pred             EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------eeEEEEec
Q 024529           56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFSQ  126 (266)
Q Consensus        56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~i~~~~q  126 (266)
                      |+++|++++|+ +..+|+++||++++|++++|+||||||||||+++|+|+++|++|+|.+++.         ..++|++|
T Consensus         1 l~~~~l~~~~~-~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q   79 (208)
T cd03268           1 LKTNDLTKTYG-KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIE   79 (208)
T ss_pred             CEEEEEEEEEC-CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecC
Confidence            47899999995 457999999999999999999999999999999999999999999998774         25899999


Q ss_pred             cccCCCCCCCcHHHHHHH--hCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCC
Q 024529          127 HHVDGLDLSSNPLLYMMR--CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNH  204 (266)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~  204 (266)
                      ++.  +....+..+++..  .......+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||||++
T Consensus        80 ~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~  156 (208)
T cd03268          80 APG--FYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKD-SAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNG  156 (208)
T ss_pred             CCc--cCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHH-HHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccc
Confidence            853  2223344444321  111234567888999999974 45788899999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529          205 LDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKAT  250 (266)
Q Consensus       205 LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~  250 (266)
                      ||+.++..+.+.|.+.   +.|||++|||++++..+||++++|++|+++
T Consensus       157 LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~  205 (208)
T cd03268         157 LDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLI  205 (208)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEE
Confidence            9999999988887653   579999999999999999999999999986

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=100.00  E-value=6.3e-48  Score=332.60  Aligned_cols=200  Identities=25%  Similarity=0.388  Sum_probs=166.1

Q ss_pred             EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------eeEEE
Q 024529           56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRIAV  123 (266)
Q Consensus        56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~i~~  123 (266)
                      |+++|+++.|+ +..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.            ..++|
T Consensus         1 l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~   79 (236)
T cd03219           1 LEVRGLTKRFG-GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGR   79 (236)
T ss_pred             CeeeeeEEEEC-CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEE
Confidence            46899999995 456999999999999999999999999999999999999999999988763            24899


Q ss_pred             EeccccCCCCCCCcHHHHHHHh---CCC-------------CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHH
Q 024529          124 FSQHHVDGLDLSSNPLLYMMRC---FPG-------------VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAK  187 (266)
Q Consensus       124 ~~q~~~~~~~~~~~~~~~~~~~---~~~-------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAr  187 (266)
                      ++|++..  ....+..+++...   ...             ...+.+.++++.+++.. ..++++.+|||||+||++|||
T Consensus        80 v~q~~~l--~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~la~  156 (236)
T cd03219          80 TFQIPRL--FPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLAD-LADRPAGELSYGQQRRLEIAR  156 (236)
T ss_pred             Eeccccc--ccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccc-hhhCChhhCCHHHHHHHHHHH
Confidence            9998632  2223444333211   101             11335778899999974 567889999999999999999


Q ss_pred             HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          188 ITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       188 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      ||+.+|++|||||||++||+.++..+.+.|.+.   +.|||+||||++++..+||++++|++|+++ ..|+.+++.
T Consensus       157 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~  231 (236)
T cd03219         157 ALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVI-AEGTPDEVR  231 (236)
T ss_pred             HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEE-eecCHHHhc
Confidence            999999999999999999999999998888653   569999999999999999999999999996 678887764

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=100.00  E-value=5.4e-48  Score=355.11  Aligned_cols=201  Identities=26%  Similarity=0.430  Sum_probs=170.5

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEE
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA  122 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~  122 (266)
                      ++|+++|++++|+ ++.+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.+++.           ..++
T Consensus         2 ~~L~~~nls~~y~-~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig   80 (402)
T PRK09536          2 PMIDVSDLSVEFG-DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA   80 (402)
T ss_pred             ceEEEeeEEEEEC-CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE
Confidence            4799999999995 567999999999999999999999999999999999999999999998773           2589


Q ss_pred             EEeccccCCCCCCCcHHHHHHHh-------CC---CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccC
Q 024529          123 VFSQHHVDGLDLSSNPLLYMMRC-------FP---GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK  192 (266)
Q Consensus       123 ~~~q~~~~~~~~~~~~~~~~~~~-------~~---~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~  192 (266)
                      |++|++...+  ..+..+++...       +.   ....+++.++++.+++. ...++++.+||||||||++|||||+++
T Consensus        81 ~v~q~~~l~~--~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~-~~~~~~~~~LSgGerQRv~IArAL~~~  157 (402)
T PRK09536         81 SVPQDTSLSF--EFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVA-QFADRPVTSLSGGERQRVLLARALAQA  157 (402)
T ss_pred             EEccCCCCCC--CCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHHcC
Confidence            9999864322  33444433211       11   12345678899999997 456789999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529          193 PHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  259 (266)
Q Consensus       193 p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  259 (266)
                      |++|||||||++||+.++..+++.|+++   +.|||++|||++++.++||++++|++|+++ ..|+++++
T Consensus       158 P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv-~~G~~~ev  226 (402)
T PRK09536        158 TPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVR-AAGPPADV  226 (402)
T ss_pred             CCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EecCHHHH
Confidence            9999999999999999998888877654   569999999999999999999999999997 67998875

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=100.00  E-value=9.6e-48  Score=346.60  Aligned_cols=208  Identities=20%  Similarity=0.313  Sum_probs=171.2

Q ss_pred             CCCcEEEEeeEEEcCC------------CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-
Q 024529           52 GPPIISFSDASFGYPG------------GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-  118 (266)
Q Consensus        52 ~~~~l~~~~l~~~y~~------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-  118 (266)
                      ..++|+++||++.|+.            ...+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+++. 
T Consensus         5 ~~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~   84 (331)
T PRK15079          5 KKVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKD   84 (331)
T ss_pred             CCceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEE
Confidence            3568999999999952            135899999999999999999999999999999999999999999998763 


Q ss_pred             -------------eeEEEEeccccCCCCCCCcHHHHHHH---hC-CCCc----HHHHHHHHHhcCCCcccccCCCCCCCh
Q 024529          119 -------------VRIAVFSQHHVDGLDLSSNPLLYMMR---CF-PGVP----EQKLRAHLGSFGVTGNLALQPMYTLSG  177 (266)
Q Consensus       119 -------------~~i~~~~q~~~~~~~~~~~~~~~~~~---~~-~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSg  177 (266)
                                   ..++|++|++...+....+..+++..   .. ....    .+.+.++++.+++.+...++++.+|||
T Consensus        85 i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSg  164 (331)
T PRK15079         85 LLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSG  164 (331)
T ss_pred             CCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCH
Confidence                         25999999974333333444444321   11 1122    345678899999965566788999999


Q ss_pred             HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecC
Q 024529          178 GQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFH  253 (266)
Q Consensus       178 GqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~  253 (266)
                      ||+|||+|||||+.+|++||+||||++||+.++.++++.|++.    +.|||+||||++++..+||++++|.+|+++ ..
T Consensus       165 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~iv-e~  243 (331)
T PRK15079        165 GQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAV-EL  243 (331)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EE
Confidence            9999999999999999999999999999999999888877543    679999999999999999999999999997 46


Q ss_pred             CChhHHH
Q 024529          254 GTFHDYK  260 (266)
Q Consensus       254 g~~~~~~  260 (266)
                      |+.+++.
T Consensus       244 g~~~~i~  250 (331)
T PRK15079        244 GTYDEVY  250 (331)
T ss_pred             cCHHHHH
Confidence            7766653

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=100.00  E-value=1.3e-47  Score=350.43  Aligned_cols=204  Identities=25%  Similarity=0.371  Sum_probs=172.1

Q ss_pred             CCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------eeEE
Q 024529           52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIA  122 (266)
Q Consensus        52 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~i~  122 (266)
                      ..++|+++|+++.|+ +..+|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.+++.         ..++
T Consensus        11 ~~~~L~l~~l~~~~~-~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig   89 (375)
T PRK09452         11 LSPLVELRGISKSFD-GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVN   89 (375)
T ss_pred             CCceEEEEEEEEEEC-CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence            456799999999995 456899999999999999999999999999999999999999999998875         2599


Q ss_pred             EEeccccCCCCCCCcHHHHHHHhC--CCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 024529          123 VFSQHHVDGLDLSSNPLLYMMRCF--PGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII  196 (266)
Q Consensus       123 ~~~q~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll  196 (266)
                      |++|++.  +....++.+++....  ....    .+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++|
T Consensus        90 ~vfQ~~~--lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~p~~LSgGq~QRVaLARaL~~~P~ll  166 (375)
T PRK09452         90 TVFQSYA--LFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEE-FAQRKPHQLSGGQQQRVAIARAVVNKPKVL  166 (375)
T ss_pred             EEecCcc--cCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCch-hhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            9999864  223334555543211  1111    346788899999974 567889999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          197 LLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       197 lLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      ||||||++||+..+..+.+.|++    .+.|+|+||||.+++..+||++++|++|++. ..|+++++.
T Consensus       167 LLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~-~~g~~~~i~  233 (375)
T PRK09452        167 LLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIE-QDGTPREIY  233 (375)
T ss_pred             EEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence            99999999999999988887764    3679999999999999999999999999997 568877764

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=100.00  E-value=9e-48  Score=373.26  Aligned_cols=252  Identities=24%  Similarity=0.358  Sum_probs=202.4

Q ss_pred             HHHHHhhhhhhHHHHHHHHHHHHhccCcccccCCCCcccccCCCCCCCCCCcEEEEeeEEEcCCC-CcceeeceEEEeCC
Q 024529            4 FIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGG-PILFKNLNFGIDLD   82 (266)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~-~~~l~~vsl~i~~G   82 (266)
                      |+.|+.+-.......+....+.+|+.++....++.+........  ..-...++++|++|+|+.+ +.+|+|+||+|++|
T Consensus       422 f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~~~~~--~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~G  499 (709)
T COG2274         422 FISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHL--PKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPG  499 (709)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccc--cccCceEEEEEEEEEeCCCCcchhhceeEEeCCC
Confidence            45555555555555666666777776665544432211111111  1113459999999999755 46999999999999


Q ss_pred             cEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEEEEeccccCCCCCCCcHHHHHHHhCCCCcH
Q 024529           83 SRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPE  151 (266)
Q Consensus        83 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~  151 (266)
                      |++||+|+||||||||+|+|+|+++|++|+|.+++.           ..+||++|++.   -+..+..+++....+..+.
T Consensus       500 e~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~---Lf~gSI~eNi~l~~p~~~~  576 (709)
T COG2274         500 EKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPF---LFSGSIRENIALGNPEATD  576 (709)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccch---hhcCcHHHHHhcCCCCCCH
Confidence            999999999999999999999999999999999884           46999999874   2455677777766666777


Q ss_pred             HHHHHHHHhcCCCcccccCC----------CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC
Q 024529          152 QKLRAHLGSFGVTGNLALQP----------MYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQ  221 (266)
Q Consensus       152 ~~~~~~l~~~~l~~~~~~~~----------~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~  221 (266)
                      +++.+++...|.++.....|          ...||||||||++|||||+++|+|||||||||+||+.+.+.+.+.|.+..
T Consensus       577 e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~  656 (709)
T COG2274         577 EEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL  656 (709)
T ss_pred             HHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh
Confidence            88888888888876555333          46799999999999999999999999999999999999999999998875


Q ss_pred             --CEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHHH
Q 024529          222 --GGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM  262 (266)
Q Consensus       222 --~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~  262 (266)
                        .|+|+|||++..+. .||+|++|++|+++ ..|+.+++.+.
T Consensus       657 ~~~T~I~IaHRl~ti~-~adrIiVl~~Gkiv-~~gs~~ell~~  697 (709)
T COG2274         657 QGRTVIIIAHRLSTIR-SADRIIVLDQGKIV-EQGSHEELLAQ  697 (709)
T ss_pred             cCCeEEEEEccchHhh-hccEEEEccCCcee-ccCCHHHHHHh
Confidence              89999999999997 59999999999997 68999988654

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.2e-47  Score=340.36  Aligned_cols=204  Identities=24%  Similarity=0.387  Sum_probs=168.5

Q ss_pred             cEEEEeeEEEcCCC----CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------
Q 024529           55 IISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------  118 (266)
Q Consensus        55 ~l~~~~l~~~y~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------  118 (266)
                      .|+++||++.|++.    +.+|+||||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++.            
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~   81 (287)
T PRK13637          2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI   81 (287)
T ss_pred             EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence            38999999999642    36999999999999999999999999999999999999999999988763            


Q ss_pred             -eeEEEEeccccCCCCCCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCc-ccccCCCCCCChHHHHHHHHHHHHc
Q 024529          119 -VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTG-NLALQPMYTLSGGQKSRVAFAKITF  190 (266)
Q Consensus       119 -~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~l~~~~l~~-~~~~~~~~~LSgGqkqRv~lAral~  190 (266)
                       ..++|++|++...+ +..+..+++..  ...+..    .+++.++++.+|+.. ...++++.+||||||||++|||||+
T Consensus        82 ~~~ig~v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~  160 (287)
T PRK13637         82 RKKVGLVFQYPEYQL-FEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVA  160 (287)
T ss_pred             hhceEEEecCchhcc-ccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHH
Confidence             24899999863221 22344444421  111122    245778999999962 3567889999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          191 KKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       191 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      .+|++|||||||++||+.++.++.+.|.+.    +.|||+||||++++..+||++++|++|+++ ..|+.+++.
T Consensus       161 ~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~-~~g~~~~~~  233 (287)
T PRK13637        161 MEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCE-LQGTPREVF  233 (287)
T ss_pred             cCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHHH
Confidence            999999999999999999999998887643    569999999999999999999999999997 678887764

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.1e-47  Score=342.78  Aligned_cols=204  Identities=24%  Similarity=0.295  Sum_probs=168.2

Q ss_pred             cEEEEeeEEEcCCC----CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------
Q 024529           55 IISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------  118 (266)
Q Consensus        55 ~l~~~~l~~~y~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------  118 (266)
                      +|+++|+++.|++.    ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++++.            
T Consensus         2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~   81 (305)
T PRK13651          2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE   81 (305)
T ss_pred             EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence            48999999999643    25899999999999999999999999999999999999999999987531            


Q ss_pred             -----------------------eeEEEEeccccCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCccccc
Q 024529          119 -----------------------VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLAL  169 (266)
Q Consensus       119 -----------------------~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~  169 (266)
                                             ..+||++|++...+ +..+..+++...  ..+.    ..+++.++++.+|+.....+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l-~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~  160 (305)
T PRK13651         82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQL-FEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ  160 (305)
T ss_pred             ccccccccccccccccchHHHHHhceEEEeeCccccc-ccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh
Confidence                                   24899999852222 223444444211  1112    23467889999999644567


Q ss_pred             CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHHhhcCEEEEEeC
Q 024529          170 QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSE  246 (266)
Q Consensus       170 ~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~~~~~~d~i~~l~~  246 (266)
                      +++.+||||||||++|||||+.+|++|||||||++||+.++..+++.|.+   .+.|||+||||++++..+||++++|++
T Consensus       161 ~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~  240 (305)
T PRK13651        161 RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKD  240 (305)
T ss_pred             CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEEC
Confidence            89999999999999999999999999999999999999999988887764   367999999999999999999999999


Q ss_pred             CeEEecCCChhHHH
Q 024529          247 GKATPFHGTFHDYK  260 (266)
Q Consensus       247 G~i~~~~g~~~~~~  260 (266)
                      |+++ ..|+++++.
T Consensus       241 G~i~-~~g~~~~~~  253 (305)
T PRK13651        241 GKII-KDGDTYDIL  253 (305)
T ss_pred             CEEE-EECCHHHHh
Confidence            9996 678877754

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=100.00  E-value=1.5e-47  Score=334.77  Aligned_cols=205  Identities=21%  Similarity=0.304  Sum_probs=167.3

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee--------------
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV--------------  119 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~--------------  119 (266)
                      ++|+++|+++.|+ ++.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++..              
T Consensus         5 ~~l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~   83 (258)
T PRK11701          5 PLLSVRGLTKLYG-PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER   83 (258)
T ss_pred             ceEEEeeeEEEcC-CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHH
Confidence            4799999999995 4579999999999999999999999999999999999999999999877642              


Q ss_pred             ------eEEEEeccccCCCCCCCcHHHHHHH---hCC----CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHH
Q 024529          120 ------RIAVFSQHHVDGLDLSSNPLLYMMR---CFP----GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFA  186 (266)
Q Consensus       120 ------~i~~~~q~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lA  186 (266)
                            .++|++|++...+....+...++..   ...    ......+.++++.+++.....++++.+|||||+||++||
T Consensus        84 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~la  163 (258)
T PRK11701         84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIA  163 (258)
T ss_pred             HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHH
Confidence                  3899999863222222222222111   111    112345678899999964345688999999999999999


Q ss_pred             HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          187 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       187 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      |||+.+|++|||||||++||+.+...+.+.+++    .+.|||+||||.+++..+||++++|++|+++ ..|+.+++.
T Consensus       164 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~-~~~~~~~~~  240 (258)
T PRK11701        164 RNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVV-ESGLTDQVL  240 (258)
T ss_pred             HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHHh
Confidence            999999999999999999999999998887754    2569999999999999999999999999996 567777654

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.7e-47  Score=343.73  Aligned_cols=209  Identities=22%  Similarity=0.301  Sum_probs=170.8

Q ss_pred             CCCCCcEEEEeeEEEcCCC----CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-------
Q 024529           50 RPGPPIISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------  118 (266)
Q Consensus        50 ~~~~~~l~~~~l~~~y~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------  118 (266)
                      .++.++|+++|+++.|++.    ..+|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|++++.       
T Consensus        16 ~~~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~   95 (320)
T PRK13631         16 LSDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKN   95 (320)
T ss_pred             CCCCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccc
Confidence            3455789999999999642    35899999999999999999999999999999999999999999987641       


Q ss_pred             --------------------eeEEEEeccccCCCCCCCcHHHHHHHh--CCCCc----HHHHHHHHHhcCCCcccccCCC
Q 024529          119 --------------------VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGVP----EQKLRAHLGSFGVTGNLALQPM  172 (266)
Q Consensus       119 --------------------~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~l~~~~l~~~~~~~~~  172 (266)
                                          ..++|++|++...+ +..+..+++...  .....    ..++.++++.+++.....++++
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~  174 (320)
T PRK13631         96 NHELITNPYSKKIKNFKELRRRVSMVFQFPEYQL-FKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSP  174 (320)
T ss_pred             cccccccccccccchHHHHHhcEEEEEECchhcc-ccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCc
Confidence                                24899999863222 223444443211  11111    2456788999999644567888


Q ss_pred             CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeE
Q 024529          173 YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKA  249 (266)
Q Consensus       173 ~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i  249 (266)
                      .+||||||||++|||||+.+|++|||||||++||+.++..+++.|.+.   +.|||+||||++++..+||++++|++|++
T Consensus       175 ~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i  254 (320)
T PRK13631        175 FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKI  254 (320)
T ss_pred             ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence            999999999999999999999999999999999999999998887643   57999999999999889999999999999


Q ss_pred             EecCCChhHHH
Q 024529          250 TPFHGTFHDYK  260 (266)
Q Consensus       250 ~~~~g~~~~~~  260 (266)
                      + ..|+.+++.
T Consensus       255 ~-~~g~~~~~~  264 (320)
T PRK13631        255 L-KTGTPYEIF  264 (320)
T ss_pred             E-EeCCHHHHh
Confidence            7 678887653

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=100.00  E-value=9.1e-48  Score=328.46  Aligned_cols=196  Identities=28%  Similarity=0.374  Sum_probs=161.9

Q ss_pred             EEEEeeEEEcCCC---CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------eeEEEEec
Q 024529           56 ISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------VRIAVFSQ  126 (266)
Q Consensus        56 l~~~~l~~~y~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------~~i~~~~q  126 (266)
                      |+++|+++.|++.   +.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.      ..++|++|
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q   80 (220)
T cd03293           1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ   80 (220)
T ss_pred             CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence            4789999999542   56999999999999999999999999999999999999999999998774      35899999


Q ss_pred             cccCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 024529          127 HHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE  200 (266)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDE  200 (266)
                      ++..  ....+..+++..  .....    ..+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||
T Consensus        81 ~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDE  157 (220)
T cd03293          81 QDAL--LPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSG-FENAYPHQLSGGMRQRVALARALAVDPDVLLLDE  157 (220)
T ss_pred             cccc--ccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECC
Confidence            8632  222334433321  11111    2356788999999974 4567889999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEe--CCeEEecCCC
Q 024529          201 PSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVS--EGKATPFHGT  255 (266)
Q Consensus       201 Pt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~--~G~i~~~~g~  255 (266)
                      ||++||+.++..+.+.+.+.    +.|||+||||++++..+||++++|+  +|+++ ..++
T Consensus       158 Pt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~-~~~~  217 (220)
T cd03293         158 PFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIV-AEVE  217 (220)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEE-EEEE
Confidence            99999999999998888643    5699999999999999999999999  79986 3444

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=9.9e-48  Score=346.13  Aligned_cols=207  Identities=21%  Similarity=0.312  Sum_probs=170.8

Q ss_pred             CCcEEEEeeEEEcCC---------CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----
Q 024529           53 PPIISFSDASFGYPG---------GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----  118 (266)
Q Consensus        53 ~~~l~~~~l~~~y~~---------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----  118 (266)
                      +++|+++||++.|+.         ...+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.+++.     
T Consensus         3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~   82 (327)
T PRK11308          3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA   82 (327)
T ss_pred             CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcC
Confidence            357999999999952         246899999999999999999999999999999999999999999988763     


Q ss_pred             ---------eeEEEEeccccCCCCCCCcHHHHHH---HhCCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHH
Q 024529          119 ---------VRIAVFSQHHVDGLDLSSNPLLYMM---RCFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSR  182 (266)
Q Consensus       119 ---------~~i~~~~q~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqR  182 (266)
                               ..++|++|++...++...+....+.   .....    ...+++.++++.+|+.+...++++++|||||+||
T Consensus        83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QR  162 (327)
T PRK11308         83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQR  162 (327)
T ss_pred             CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHH
Confidence                     2599999997433443333332221   11111    1235678899999996545678899999999999


Q ss_pred             HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhH
Q 024529          183 VAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHD  258 (266)
Q Consensus       183 v~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~  258 (266)
                      |+|||||+.+|++||+||||++||+.++.++++.|.+    .+.|||+||||++.+..+||++++|.+|+++ ..|+.++
T Consensus       163 v~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv-e~g~~~~  241 (327)
T PRK11308        163 IAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV-EKGTKEQ  241 (327)
T ss_pred             HHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHH
Confidence            9999999999999999999999999999998887764    3679999999999999999999999999997 4677666


Q ss_pred             HH
Q 024529          259 YK  260 (266)
Q Consensus       259 ~~  260 (266)
                      +.
T Consensus       242 ~~  243 (327)
T PRK11308        242 IF  243 (327)
T ss_pred             Hh
Confidence            53

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=100.00  E-value=6.7e-48  Score=328.68  Aligned_cols=190  Identities=29%  Similarity=0.403  Sum_probs=157.4

Q ss_pred             EEEEeeEEEcCCC---CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe--------------
Q 024529           56 ISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------  118 (266)
Q Consensus        56 l~~~~l~~~y~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------  118 (266)
                      |+++|++++|++.   +.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.              
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~   80 (218)
T cd03255           1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR   80 (218)
T ss_pred             CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence            4789999999642   57999999999999999999999999999999999999999999987652              


Q ss_pred             -eeEEEEeccccCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHcc
Q 024529          119 -VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK  191 (266)
Q Consensus       119 -~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~  191 (266)
                       ..++|++|++..  ....+..+++..  .....    ..+++.++++.+++.. ..++++.+||||||||++|||||+.
T Consensus        81 ~~~i~~~~q~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~  157 (218)
T cd03255          81 RRHIGFVFQSFNL--LPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGD-RLNHYPSELSGGQQQRVAIARALAN  157 (218)
T ss_pred             hhcEEEEeecccc--CCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCch-hhhcChhhcCHHHHHHHHHHHHHcc
Confidence             248999998632  222234433321  11111    2346788999999974 4578889999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeE
Q 024529          192 KPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKA  249 (266)
Q Consensus       192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i  249 (266)
                      +|++|||||||++||+.++..+.+.+.+.    +.|||+||||++++. +||++++|++|++
T Consensus       158 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G~i  218 (218)
T cd03255         158 DPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI  218 (218)
T ss_pred             CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence            99999999999999999999988887653    569999999999997 9999999999974

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=100.00  E-value=1e-47  Score=326.60  Aligned_cols=191  Identities=28%  Similarity=0.436  Sum_probs=159.3

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe--------------ee
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------VR  120 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------~~  120 (266)
                      ||+++|+++.|+++..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.              ..
T Consensus         1 ~l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   80 (214)
T TIGR02673         1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR   80 (214)
T ss_pred             CEEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence            5889999999953457999999999999999999999999999999999999999999988763              24


Q ss_pred             EEEEeccccCCCCCCCcHHHHHHHh--CCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 024529          121 IAVFSQHHVDGLDLSSNPLLYMMRC--FPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH  194 (266)
Q Consensus       121 i~~~~q~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~  194 (266)
                      ++|++|++..  ....+..+++...  ...    ...+++.++++.+++.+ ..++++.+|||||+||++|||||+.+|+
T Consensus        81 i~~~~q~~~~--~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~la~al~~~p~  157 (214)
T TIGR02673        81 IGVVFQDFRL--LPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEH-KADAFPEQLSGGEQQRVAIARAIVNSPP  157 (214)
T ss_pred             eEEEecChhh--ccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-hhhCChhhCCHHHHHHHHHHHHHhCCCC
Confidence            8999998632  2223344333211  111    12356788999999974 4567889999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCe
Q 024529          195 IILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGK  248 (266)
Q Consensus       195 lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~  248 (266)
                      +|||||||++||+.++..+.+.++++   +.|||+||||++++..+||++++|++|+
T Consensus       158 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~  214 (214)
T TIGR02673       158 LLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR  214 (214)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence            99999999999999999998888653   5799999999999999999999999885

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=100.00  E-value=1.1e-47  Score=327.78  Aligned_cols=200  Identities=23%  Similarity=0.349  Sum_probs=165.5

Q ss_pred             EEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee----------eEEEE
Q 024529           56 ISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV----------RIAVF  124 (266)
Q Consensus        56 l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~----------~i~~~  124 (266)
                      |+++|+++.|+++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++..          .++|+
T Consensus         1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v   80 (220)
T cd03263           1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC   80 (220)
T ss_pred             CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEe
Confidence            5789999999642 569999999999999999999999999999999999999999999987642          48999


Q ss_pred             eccccCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEE
Q 024529          125 SQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILL  198 (266)
Q Consensus       125 ~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllL  198 (266)
                      +|++..  ....+..+++..  .....    ..+++.++++.+++.+ ..++++.+|||||+||++|||||+.+|++|||
T Consensus        81 ~q~~~~--~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~~p~llll  157 (220)
T cd03263          81 PQFDAL--FDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTD-KANKRARTLSGGMKRKLSLAIALIGGPSVLLL  157 (220)
T ss_pred             cCcCCc--cccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-HHhChhhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            998532  222334433321  11111    1345778899999964 45678899999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529          199 DEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  259 (266)
Q Consensus       199 DEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  259 (266)
                      ||||++||+.+...+.+.|.+.  +.|||++|||++++..+||++++|++|+++ ..|+.+++
T Consensus       158 DEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~-~~~~~~~~  219 (220)
T cd03263         158 DEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLR-CIGSPQEL  219 (220)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEE-ecCCHHHc
Confidence            9999999999999998888764  369999999999999999999999999996 56777653

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.9e-47  Score=349.54  Aligned_cols=201  Identities=23%  Similarity=0.327  Sum_probs=168.8

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------eeEEEEe
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS  125 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~i~~~~  125 (266)
                      +|+++|++++|+ +..+|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++.         ..++|++
T Consensus         3 ~l~i~~l~~~~~-~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~   81 (369)
T PRK11000          3 SVTLRNVTKAYG-DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVF   81 (369)
T ss_pred             EEEEEEEEEEeC-CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEe
Confidence            589999999995 456899999999999999999999999999999999999999999998764         2499999


Q ss_pred             ccccCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 024529          126 QHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD  199 (266)
Q Consensus       126 q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLD  199 (266)
                      |++..  ....+..+++...  ....    ..+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++||||
T Consensus        82 Q~~~l--~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLD  158 (369)
T PRK11000         82 QSYAL--YPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAH-LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLD  158 (369)
T ss_pred             CCccc--CCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChh-hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            98642  2223444444221  1111    1346788999999974 567889999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          200 EPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       200 EPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      |||++||+.++..+.+.|++.    +.|+|+||||++++..+||++++|++|++. ..|+++++.
T Consensus       159 EPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~-~~g~~~~i~  222 (369)
T PRK11000        159 EPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVA-QVGKPLELY  222 (369)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence            999999999999888777543    679999999999999999999999999996 568877764

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=100.00  E-value=1.6e-47  Score=335.91  Aligned_cols=205  Identities=21%  Similarity=0.326  Sum_probs=168.2

Q ss_pred             cEEEEeeEEEcCC--------CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe--------
Q 024529           55 IISFSDASFGYPG--------GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------  118 (266)
Q Consensus        55 ~l~~~~l~~~y~~--------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------  118 (266)
                      +|+++||++.|++        ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.        
T Consensus         2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~   81 (265)
T TIGR02769         2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK   81 (265)
T ss_pred             eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence            6899999999953        356899999999999999999999999999999999999999999988763        


Q ss_pred             ------eeEEEEeccccCCCCCCCcHHHHHH---HhCCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHH
Q 024529          119 ------VRIAVFSQHHVDGLDLSSNPLLYMM---RCFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAF  185 (266)
Q Consensus       119 ------~~i~~~~q~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~l  185 (266)
                            ..++|++|++...+....+..+++.   .....    ...+++.++++.+++.....++++.+|||||+||++|
T Consensus        82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~l  161 (265)
T TIGR02769        82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINI  161 (265)
T ss_pred             HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHH
Confidence                  2489999985222222233433321   11111    1235678899999996445678899999999999999


Q ss_pred             HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          186 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       186 Aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      ||||+.+|++|||||||++||+.++..+.+.|.++    +.|||+||||++++..+||++++|++|+++ ..|+.+++.
T Consensus       162 aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~  239 (265)
T TIGR02769       162 ARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIV-EECDVAQLL  239 (265)
T ss_pred             HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEE-EECCHHHHc
Confidence            99999999999999999999999998888877643    579999999999999999999999999996 568877664

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=100.00  E-value=2e-47  Score=329.01  Aligned_cols=202  Identities=24%  Similarity=0.347  Sum_probs=167.3

Q ss_pred             cEEEEeeEEEcCCC---CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-------------
Q 024529           55 IISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------  118 (266)
Q Consensus        55 ~l~~~~l~~~y~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------  118 (266)
                      ||+++|++++|++.   ..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.             
T Consensus         1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~   80 (233)
T cd03258           1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA   80 (233)
T ss_pred             CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence            48899999999543   16999999999999999999999999999999999999999999988753             


Q ss_pred             -eeEEEEeccccCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHcc
Q 024529          119 -VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK  191 (266)
Q Consensus       119 -~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~  191 (266)
                       ..++|++|++..  ....+..+++...  ....    ..+.+.++++.+++.+ ..++++.+|||||+||++|||||+.
T Consensus        81 ~~~i~~~~q~~~~--~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~  157 (233)
T cd03258          81 RRRIGMIFQHFNL--LSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLED-KADAYPAQLSGGQKQRVGIARALAN  157 (233)
T ss_pred             HhheEEEccCccc--CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChh-hhhcChhhCCHHHHHHHHHHHHHhc
Confidence             248999998632  2223444433211  1111    1345778899999974 4678889999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          192 KPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      +|++|||||||++||+.++..+.+.+.+.    +.|||++||+.+++..+||++++|++|+++ ..|+.+++.
T Consensus       158 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~  229 (233)
T cd03258         158 NPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVV-EEGTVEEVF  229 (233)
T ss_pred             CCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EecCHHHHh
Confidence            99999999999999999999988887643    569999999999999999999999999996 578877764

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.8e-47  Score=339.11  Aligned_cols=204  Identities=26%  Similarity=0.381  Sum_probs=168.1

Q ss_pred             cEEEEeeEEEcCCC----CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------
Q 024529           55 IISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------  118 (266)
Q Consensus        55 ~l~~~~l~~~y~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------  118 (266)
                      +|+++|+++.|++.    +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.            
T Consensus         2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~   81 (287)
T PRK13641          2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK   81 (287)
T ss_pred             EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence            58899999999632    35899999999999999999999999999999999999999999998774            


Q ss_pred             ---eeEEEEeccccCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHH
Q 024529          119 ---VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT  189 (266)
Q Consensus       119 ---~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral  189 (266)
                         ..++|++|++...+. ..+..+++..  .....    ..+++.++++.+++.....++++.+||||||||++|||||
T Consensus        82 ~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral  160 (287)
T PRK13641         82 KLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVM  160 (287)
T ss_pred             HHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHH
Confidence               148999998521121 2344444321  11111    2345788899999963456789999999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          190 FKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       190 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      +.+|++|||||||+|||+.++..+.+.|.+.   +.|||++|||++++..+||++++|++|+++ ..|+.+++.
T Consensus       161 ~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~  233 (287)
T PRK13641        161 AYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLI-KHASPKEIF  233 (287)
T ss_pred             HcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHh
Confidence            9999999999999999999999888887654   469999999999999999999999999996 578877654

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=100.00  E-value=1.9e-47  Score=347.96  Aligned_cols=202  Identities=21%  Similarity=0.301  Sum_probs=170.5

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCc--eEEEEcCe---------eeEEE
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSS--GTVFRSAK---------VRIAV  123 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~--G~i~~~~~---------~~i~~  123 (266)
                      .|+++|++++|+ +..+|+|+||+|++||+++|+|||||||||||++|+|+++|++  |+|.+++.         ..++|
T Consensus         5 ~l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~   83 (362)
T TIGR03258         5 GIRIDHLRVAYG-ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLAL   83 (362)
T ss_pred             EEEEEEEEEEEC-CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEE
Confidence            489999999995 4568999999999999999999999999999999999999999  99998774         35999


Q ss_pred             EeccccCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 024529          124 FSQHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIIL  197 (266)
Q Consensus       124 ~~q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll  197 (266)
                      ++|++..  ....++.+++...  ....    ...++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++||
T Consensus        84 vfQ~~~l--~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~-~~~~~~~~LSgGq~QRvaLARAL~~~P~llL  160 (362)
T TIGR03258        84 LFQNYAL--FPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGD-AAAHLPAQLSGGMQQRIAIARAIAIEPDVLL  160 (362)
T ss_pred             EECCccc--CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCc-hhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            9998642  2333455444321  1112    2346788999999974 5678999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHhh----c-CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          198 LDEPSNHLDLDAVEALIQGLVL----F-QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       198 LDEPt~~LD~~~~~~l~~~l~~----~-~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      |||||++||+..+.++.+.|.+    . +.|+|+||||++++..+||+|++|++|+++ ..|+++++..
T Consensus       161 LDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~-~~g~~~~~~~  228 (362)
T TIGR03258       161 LDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLA-AHGEPQALYD  228 (362)
T ss_pred             EcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence            9999999999999988887754    2 569999999999999999999999999997 5788887643

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=100.00  E-value=1.6e-47  Score=336.57  Aligned_cols=202  Identities=24%  Similarity=0.378  Sum_probs=167.8

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe--------------e
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------V  119 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------~  119 (266)
                      ++|+++|+++.|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.              .
T Consensus         6 ~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~   84 (269)
T PRK11831          6 NLVDMRGVSFTRG-NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK   84 (269)
T ss_pred             ceEEEeCeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence            5799999999995 456899999999999999999999999999999999999999999988763              2


Q ss_pred             eEEEEeccccCCCCCCCcHHHHHHH---hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccC
Q 024529          120 RIAVFSQHHVDGLDLSSNPLLYMMR---CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK  192 (266)
Q Consensus       120 ~i~~~~q~~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~  192 (266)
                      .++|++|++..  ....+..+++..   ......    ...+.++++.+++.+ ..++++.+||||||||++|||||+.+
T Consensus        85 ~i~~v~q~~~~--~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGq~qrv~laral~~~  161 (269)
T PRK11831         85 RMSMLFQSGAL--FTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRG-AAKLMPSELSGGMARRAALARAIALE  161 (269)
T ss_pred             cEEEEeccccc--CCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChh-hhhCChhhCCHHHHHHHHHHHHHhcC
Confidence            48999998532  222344444321   111111    235667899999974 56788999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          193 PHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       193 p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      |++|||||||++||+.++..+.+.|.+.    +.|||+||||++++..+||++++|++|+++ +.|+.+++.
T Consensus       162 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~  232 (269)
T PRK11831        162 PDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIV-AHGSAQALQ  232 (269)
T ss_pred             CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEE-EeCCHHHHh
Confidence            9999999999999999999888877653    569999999999999999999999999996 578877664

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=100.00  E-value=2e-47  Score=332.64  Aligned_cols=201  Identities=25%  Similarity=0.452  Sum_probs=168.3

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCC
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD  133 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~  133 (266)
                      ++|+++|+++.|+ +..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++...++|++|++.....
T Consensus         3 ~~l~~~~l~~~~~-~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~   81 (251)
T PRK09544          3 SLVSLENVSVSFG-QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTT   81 (251)
T ss_pred             cEEEEeceEEEEC-CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccc
Confidence            4799999999995 456999999999999999999999999999999999999999999999887789999998632222


Q ss_pred             CCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH
Q 024529          134 LSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL  213 (266)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l  213 (266)
                      +..+...++. .......+++.++++.+++.+ ..++++.+|||||+||++|||||+.+|++|||||||++||+.++..+
T Consensus        82 l~~~~~~~~~-~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l  159 (251)
T PRK09544         82 LPLTVNRFLR-LRPGTKKEDILPALKRVQAGH-LIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVAL  159 (251)
T ss_pred             cChhHHHHHh-ccccccHHHHHHHHHHcCChH-HHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH
Confidence            2223333322 122334567888999999974 45788999999999999999999999999999999999999999998


Q ss_pred             HHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529          214 IQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  259 (266)
Q Consensus       214 ~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  259 (266)
                      .+.|.+.    +.|||+||||++++..+||++++|++ +++ ..|+.+++
T Consensus       160 ~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~-~~g~~~~~  207 (251)
T PRK09544        160 YDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HIC-CSGTPEVV  207 (251)
T ss_pred             HHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceE-eeCCHHHH
Confidence            8877543    67999999999999999999999965 665 56777665

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.6e-47  Score=331.46  Aligned_cols=202  Identities=22%  Similarity=0.332  Sum_probs=167.7

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEE
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA  122 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~  122 (266)
                      .+|+++|+++.|+ ++.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++.           ..++
T Consensus         2 ~~l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~   80 (241)
T PRK14250          2 NEIEFKEVSYSSF-GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIG   80 (241)
T ss_pred             ceEEEEeEEEEeC-CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEE
Confidence            3589999999995 456899999999999999999999999999999999999999999998763           2489


Q ss_pred             EEeccccCCCCCCCcHHHHHHHh--CCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 024529          123 VFSQHHVDGLDLSSNPLLYMMRC--FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE  200 (266)
Q Consensus       123 ~~~q~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDE  200 (266)
                      |++|++.. +  ..+..+++...  .......++.++++.+++.....++++.+|||||+||++|||||+.+|++|||||
T Consensus        81 ~~~q~~~~-~--~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE  157 (241)
T PRK14250         81 MVFQQPHL-F--EGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDE  157 (241)
T ss_pred             EEecCchh-c--hhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            99998632 1  12444443211  1122345678889999996445678899999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          201 PSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       201 Pt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      ||++||+.++..+.+.|.+.    +.|||++|||++++..+||++++|++|+++ ..|+.+++.
T Consensus       158 Pt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~  220 (241)
T PRK14250        158 PTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILV-EYAKTYDFF  220 (241)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEE-EeCCHHHHh
Confidence            99999999999988877653    679999999999999999999999999996 456666553

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=100.00  E-value=1.4e-47  Score=336.54  Aligned_cols=206  Identities=22%  Similarity=0.323  Sum_probs=167.7

Q ss_pred             CcEEEEeeEEEcCC--------CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-------
Q 024529           54 PIISFSDASFGYPG--------GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------  118 (266)
Q Consensus        54 ~~l~~~~l~~~y~~--------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------  118 (266)
                      ++|+++||+++|++        ...+|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++.       
T Consensus         3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~   82 (267)
T PRK15112          3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY   82 (267)
T ss_pred             ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCch
Confidence            57999999999952        246999999999999999999999999999999999999999999988763       


Q ss_pred             ----eeEEEEeccccCCCCCCCcHHHHHH---HhCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHH
Q 024529          119 ----VRIAVFSQHHVDGLDLSSNPLLYMM---RCFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAK  187 (266)
Q Consensus       119 ----~~i~~~~q~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAr  187 (266)
                          ..++|++|++...+....+...++.   ......    ..+++.++++.+++.....++++.+|||||+||++|||
T Consensus        83 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lar  162 (267)
T PRK15112         83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLAR  162 (267)
T ss_pred             hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHH
Confidence                2489999986322222222222221   111111    13457788999999544556788999999999999999


Q ss_pred             HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          188 ITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       188 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      ||+.+|+||||||||++||+.++..+.+.|.+.    +.|||+|||+++++..+||++++|++|+++ ..|+++++.
T Consensus       163 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~  238 (267)
T PRK15112        163 ALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVV-ERGSTADVL  238 (267)
T ss_pred             HHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE-ecCCHHHHh
Confidence            999999999999999999999999988877653    569999999999999999999999999996 678777664

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=100.00  E-value=1.3e-47  Score=328.96  Aligned_cols=197  Identities=22%  Similarity=0.342  Sum_probs=162.7

Q ss_pred             EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCC-----CCCceEEEEcCe------------
Q 024529           56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL-----QPSSGTVFRSAK------------  118 (266)
Q Consensus        56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-----~p~~G~i~~~~~------------  118 (266)
                      |+++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|++     +|++|+|.+++.            
T Consensus         1 i~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~   79 (227)
T cd03260           1 IELRDLNVYYG-DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLEL   79 (227)
T ss_pred             CEEEEEEEEcC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHH
Confidence            47899999995 457999999999999999999999999999999999999     999999988763            


Q ss_pred             -eeEEEEeccccCCCCCCCcHHHHHHHh--CCCC-----cHHHHHHHHHhcCCCcccccCC--CCCCChHHHHHHHHHHH
Q 024529          119 -VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGV-----PEQKLRAHLGSFGVTGNLALQP--MYTLSGGQKSRVAFAKI  188 (266)
Q Consensus       119 -~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~l~~~~l~~~~~~~~--~~~LSgGqkqRv~lAra  188 (266)
                       ..++|++|++..  . ..+..+++...  ....     ..+++.++++.+++.+.. +++  +.+||||||||++||||
T Consensus        80 ~~~i~~~~q~~~~--~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~LSgG~~qrv~la~a  155 (227)
T cd03260          80 RRRVGMVFQKPNP--F-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEV-KDRLHALGLSGGQQQRLCLARA  155 (227)
T ss_pred             HhhEEEEecCchh--c-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHH-hccCCcccCCHHHHHHHHHHHH
Confidence             148999998632  2 33444443211  1111     235677889999997543 344  59999999999999999


Q ss_pred             HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhH
Q 024529          189 TFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQ--GGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHD  258 (266)
Q Consensus       189 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~  258 (266)
                      |+.+|++|||||||++||+.++..+.+.|.+..  .|||++|||++++..+||++++|++|+++ ..|+.++
T Consensus       156 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~  226 (227)
T cd03260         156 LANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLV-EFGPTEQ  226 (227)
T ss_pred             HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEE-EecCccc
Confidence            999999999999999999999999999887652  58999999999999999999999999996 5676543

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=100.00  E-value=4.9e-48  Score=328.50  Aligned_cols=191  Identities=29%  Similarity=0.418  Sum_probs=158.7

Q ss_pred             EEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------eeEEEEeccccC
Q 024529           57 SFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------VRIAVFSQHHVD  130 (266)
Q Consensus        57 ~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------~~i~~~~q~~~~  130 (266)
                      +++|+++.|+ +..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.      ..++|++|++..
T Consensus         1 ~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~   79 (213)
T cd03235           1 EVEDLTVSYG-GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSI   79 (213)
T ss_pred             CcccceeEEC-CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEecccccc
Confidence            3689999995 456899999999999999999999999999999999999999999999873      459999998642


Q ss_pred             CCCCCCcHHHHHHHhCC----------CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 024529          131 GLDLSSNPLLYMMRCFP----------GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE  200 (266)
Q Consensus       131 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDE  200 (266)
                      ...+..+..+++.....          ....+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||
T Consensus        80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~la~al~~~p~llllDE  158 (213)
T cd03235          80 DRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSE-LADRQIGELSGGQQQRVLLARALVQDPDLLLLDE  158 (213)
T ss_pred             ccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHH-HHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence            11122345554432110          012346788999999974 5678899999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeE
Q 024529          201 PSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKA  249 (266)
Q Consensus       201 Pt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i  249 (266)
                      ||++||+.++..+.+.|.++   +.|||++|||++++..+||++++|++|.+
T Consensus       159 Pt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~~~  210 (213)
T cd03235         159 PFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVV  210 (213)
T ss_pred             CcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCcEe
Confidence            99999999999998888654   46999999999999999999999988643

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=100.00  E-value=2.4e-47  Score=324.19  Aligned_cols=192  Identities=22%  Similarity=0.351  Sum_probs=160.1

Q ss_pred             EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------eeEEEEec
Q 024529           56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFSQ  126 (266)
Q Consensus        56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~i~~~~q  126 (266)
                      |+++|+++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.         ..++|++|
T Consensus         1 i~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q   79 (213)
T cd03301           1 VELENVTKRFGN-VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQ   79 (213)
T ss_pred             CEEEeeEEEECC-eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEec
Confidence            478999999954 57899999999999999999999999999999999999999999998763         24899999


Q ss_pred             cccCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 024529          127 HHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE  200 (266)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDE  200 (266)
                      ++..  ....+..+++...  ....    ..+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||
T Consensus        80 ~~~~--~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qr~~laral~~~p~llllDE  156 (213)
T cd03301          80 NYAL--YPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEH-LLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDE  156 (213)
T ss_pred             Chhh--ccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHH-HHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            8632  2223444433211  1111    1345677899999974 4678899999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEe
Q 024529          201 PSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATP  251 (266)
Q Consensus       201 Pt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~  251 (266)
                      ||+|||+.++..+.+.+.+.    +.|||++|||++++..+||++++|++|+++.
T Consensus       157 Pt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~  211 (213)
T cd03301         157 PLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQ  211 (213)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEe
Confidence            99999999999998887653    5799999999999999999999999999863

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=100.00  E-value=2e-47  Score=325.70  Aligned_cols=193  Identities=22%  Similarity=0.318  Sum_probs=161.7

Q ss_pred             cEEEEeeEEEcCCCC---cceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe----------eeE
Q 024529           55 IISFSDASFGYPGGP---ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRI  121 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~---~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~i  121 (266)
                      +|+++|+++.|++..   .+|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++.          ..+
T Consensus         1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i   80 (218)
T cd03266           1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRL   80 (218)
T ss_pred             CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhE
Confidence            478999999996431   6999999999999999999999999999999999999999999998763          258


Q ss_pred             EEEeccccCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 024529          122 AVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI  195 (266)
Q Consensus       122 ~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~l  195 (266)
                      +|++|++.  +....+..+++..  .....    ..+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++
T Consensus        81 ~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~i  157 (218)
T cd03266          81 GFVSDSTG--LYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEE-LLDRRVGGFSTGMRQKVAIARALVHDPPV  157 (218)
T ss_pred             EEecCCcc--cCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-HHhhhhhhcCHHHHHHHHHHHHHhcCCCE
Confidence            99999863  2222344443321  11111    2346778999999964 56788999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529          196 ILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKAT  250 (266)
Q Consensus       196 llLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~  250 (266)
                      |||||||++||+.++..+.+.|.++   +.|||+||||++++..+||++++|++|++.
T Consensus       158 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~  215 (218)
T cd03266         158 LLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVV  215 (218)
T ss_pred             EEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEe
Confidence            9999999999999999998888654   569999999999999999999999999986

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=100.00  E-value=2.1e-47  Score=346.96  Aligned_cols=201  Identities=25%  Similarity=0.302  Sum_probs=169.6

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------eeEEEEe
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS  125 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~i~~~~  125 (266)
                      +|+++|+++.|+ +..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|++++.         ..++|++
T Consensus         2 ~L~i~~l~~~~~-~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~   80 (353)
T PRK10851          2 SIEIANIKKSFG-RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVF   80 (353)
T ss_pred             EEEEEEEEEEeC-CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEe
Confidence            589999999995 456999999999999999999999999999999999999999999998774         2599999


Q ss_pred             ccccCCCCCCCcHHHHHHHhC------CCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 024529          126 QHHVDGLDLSSNPLLYMMRCF------PGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI  195 (266)
Q Consensus       126 q~~~~~~~~~~~~~~~~~~~~------~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~l  195 (266)
                      |++..  ....+..+++....      ...    ..+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++
T Consensus        81 Q~~~l--~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGq~QRvalArAL~~~P~l  157 (353)
T PRK10851         81 QHYAL--FRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAH-LADRYPAQLSGGQKQRVALARALAVEPQI  157 (353)
T ss_pred             cCccc--CCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCch-hhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence            98632  22334444443211      011    1356788999999974 56789999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          196 ILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       196 llLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      |||||||++||+.++..+.+.|++.    +.|+|+||||++++..+||++++|++|+++ ..|+++++.
T Consensus       158 lLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~-~~g~~~~i~  225 (353)
T PRK10851        158 LLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIE-QAGTPDQVW  225 (353)
T ss_pred             EEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence            9999999999999998888877643    569999999999999999999999999997 568887764

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=100.00  E-value=2.7e-47  Score=332.94  Aligned_cols=203  Identities=22%  Similarity=0.311  Sum_probs=169.0

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------------
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------  118 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------------  118 (266)
                      .+|+++||++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.               
T Consensus         4 ~~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~   82 (257)
T PRK10619          4 NKLNVIDLHKRYG-EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVA   82 (257)
T ss_pred             ccEEEeeeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccc
Confidence            4699999999995 456999999999999999999999999999999999999999999987763               


Q ss_pred             ---------eeEEEEeccccCCCCCCCcHHHHHHH---hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHH
Q 024529          119 ---------VRIAVFSQHHVDGLDLSSNPLLYMMR---CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSR  182 (266)
Q Consensus       119 ---------~~i~~~~q~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqR  182 (266)
                               ..++|++|++..  ....+..+++..   .....    ..+++.++++.+++.....++++.+|||||+||
T Consensus        83 ~~~~~~~~~~~i~~v~q~~~l--~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qr  160 (257)
T PRK10619         83 DKNQLRLLRTRLTMVFQHFNL--WSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQR  160 (257)
T ss_pred             cchHHHHHhhceEEEecCccc--CCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHH
Confidence                     248999998632  222344444321   11111    234678899999997544467889999999999


Q ss_pred             HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529          183 VAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  259 (266)
Q Consensus       183 v~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  259 (266)
                      ++|||||+.+|++|||||||++||+.++..+.+.|.+.   +.|||+||||++++..+||++++|++|+++ +.|+++++
T Consensus       161 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~  239 (257)
T PRK10619        161 VSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE-EEGAPEQL  239 (257)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHh
Confidence            99999999999999999999999999999988877653   579999999999999999999999999997 67887776


Q ss_pred             H
Q 024529          260 K  260 (266)
Q Consensus       260 ~  260 (266)
                      .
T Consensus       240 ~  240 (257)
T PRK10619        240 F  240 (257)
T ss_pred             h
Confidence            4

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=1.5e-46  Score=360.77  Aligned_cols=210  Identities=29%  Similarity=0.492  Sum_probs=178.0

Q ss_pred             CCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCC
Q 024529           52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDG  131 (266)
Q Consensus        52 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~  131 (266)
                      ..++|+++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+.+...++|++|++. .
T Consensus       321 ~~~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~-~  398 (556)
T PRK11819        321 GDKVIEAENLSKSFG-DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRD-A  398 (556)
T ss_pred             CCeEEEEEeEEEEEC-CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchh-h
Confidence            356899999999995 45699999999999999999999999999999999999999999999866668999999851 2


Q ss_pred             CCCCCcHHHHHHHhC--C--CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCH
Q 024529          132 LDLSSNPLLYMMRCF--P--GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL  207 (266)
Q Consensus       132 ~~~~~~~~~~~~~~~--~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~  207 (266)
                      +....++.+++....  .  ......+..+++.+++.....++++.+||||||||++|||||+.+|++|||||||+|||+
T Consensus       399 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~  478 (556)
T PRK11819        399 LDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDV  478 (556)
T ss_pred             cCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence            223345555443211  1  112344567899999964445788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCEEEEEecCHHHHHhhcCEEEEEeC-CeEEecCCChhHHHHHH
Q 024529          208 DAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSE-GKATPFHGTFHDYKKML  263 (266)
Q Consensus       208 ~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~-G~i~~~~g~~~~~~~~~  263 (266)
                      .++..+.+.|.++.+|||+||||++++..+||++++|++ |++..+.|++++|.+..
T Consensus       479 ~~~~~l~~~l~~~~~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~~  535 (556)
T PRK11819        479 ETLRALEEALLEFPGCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEEDK  535 (556)
T ss_pred             HHHHHHHHHHHhCCCeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHHH
Confidence            999999999998877999999999999999999999986 88877899999986654

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.4e-47  Score=338.23  Aligned_cols=204  Identities=25%  Similarity=0.350  Sum_probs=168.0

Q ss_pred             cEEEEeeEEEcCCC----CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------
Q 024529           55 IISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------  118 (266)
Q Consensus        55 ~l~~~~l~~~y~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------  118 (266)
                      .|+++||++.|+++    ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.            
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~   81 (286)
T PRK13646          2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR   81 (286)
T ss_pred             EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence            48999999999532    35999999999999999999999999999999999999999999998763            


Q ss_pred             ---eeEEEEeccccCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHH
Q 024529          119 ---VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT  189 (266)
Q Consensus       119 ---~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral  189 (266)
                         ..++|++|++...+. ..+..+++...  ....    ..+++.++++.+|+.....++++.+||||||||++|||||
T Consensus        82 ~~~~~ig~v~q~~~~~l~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL  160 (286)
T PRK13646         82 PVRKRIGMVFQFPESQLF-EDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSIL  160 (286)
T ss_pred             HHHhheEEEecChHhccc-hhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence               148999998632221 22444443211  1111    2345778899999963456788999999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          190 FKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       190 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      +.+|++|||||||++||+.++..+.+.+.+.    +.|||+||||++++..+||++++|++|+++ ..|+++++.
T Consensus       161 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~-~~g~~~~~~  234 (286)
T PRK13646        161 AMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIV-SQTSPKELF  234 (286)
T ss_pred             HhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EECCHHHHH
Confidence            9999999999999999999999988887653    569999999999999999999999999997 578877754

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=100.00  E-value=4.3e-47  Score=325.53  Aligned_cols=196  Identities=23%  Similarity=0.375  Sum_probs=159.2

Q ss_pred             cEEEEeeEEEcCCC---CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-------------
Q 024529           55 IISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------  118 (266)
Q Consensus        55 ~l~~~~l~~~y~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------  118 (266)
                      +|+++|+++.|++.   ..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.             
T Consensus         1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~   80 (228)
T cd03257           1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR   80 (228)
T ss_pred             CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence            47899999999543   26899999999999999999999999999999999999999999988663             


Q ss_pred             -eeEEEEeccccCCCCCCCcHHHHHHH---hCC-CCcH---HH-HHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHH
Q 024529          119 -VRIAVFSQHHVDGLDLSSNPLLYMMR---CFP-GVPE---QK-LRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT  189 (266)
Q Consensus       119 -~~i~~~~q~~~~~~~~~~~~~~~~~~---~~~-~~~~---~~-~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral  189 (266)
                       ..++|++|++...+....+..+++..   ... ....   .. +.++++.+++.....++++.+|||||+||++|||||
T Consensus        81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral  160 (228)
T cd03257          81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARAL  160 (228)
T ss_pred             hccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHH
Confidence             25899999862122222334333321   111 1111   12 246788999853456788899999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529          190 FKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKAT  250 (266)
Q Consensus       190 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~  250 (266)
                      +.+|++|||||||++||+.++..+.+.|.+.    +.|||++|||++++..+||++++|++|+++
T Consensus       161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~  225 (228)
T cd03257         161 ALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIV  225 (228)
T ss_pred             hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEE
Confidence            9999999999999999999999998888653    579999999999999999999999999986

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK10908 cell division protein FtsE; Provisional

Probab=100.00  E-value=3.9e-47  Score=325.00  Aligned_cols=193  Identities=29%  Similarity=0.429  Sum_probs=160.9

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe--------------ee
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------VR  120 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------~~  120 (266)
                      ||+++|+++.|++++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.              ..
T Consensus         1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~   80 (222)
T PRK10908          1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ   80 (222)
T ss_pred             CEEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence            4889999999943457999999999999999999999999999999999999999999988763              24


Q ss_pred             EEEEeccccCCCCCCCcHHHHHHHh--CCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 024529          121 IAVFSQHHVDGLDLSSNPLLYMMRC--FPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH  194 (266)
Q Consensus       121 i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~  194 (266)
                      ++|++|++..  ....+..+++...  .....    .+++.++++.+++.+ ..++++.+||||||||++|||||+.+|+
T Consensus        81 i~~~~q~~~~--~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~  157 (222)
T PRK10908         81 IGMIFQDHHL--LMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLD-KAKNFPIQLSGGEQQRVGIARAVVNKPA  157 (222)
T ss_pred             eEEEecCccc--cccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChh-hhhCCchhCCHHHHHHHHHHHHHHcCCC
Confidence            8999998632  2233444443211  11111    234678899999974 4578889999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529          195 IILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKAT  250 (266)
Q Consensus       195 lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~  250 (266)
                      +|||||||++||+.++..+.+.+.+.   +.|||++|||++++..+||++++|++|+++
T Consensus       158 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~  216 (222)
T PRK10908        158 VLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH  216 (222)
T ss_pred             EEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEc
Confidence            99999999999999999888877653   579999999999999999999999999985

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.2e-47  Score=370.02  Aligned_cols=203  Identities=26%  Similarity=0.440  Sum_probs=173.5

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCC
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDL  134 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~  134 (266)
                      ||+++||+++|+ ++.+|+|+||+|++|+++||+||||||||||||+|+|+++|++|+|.+.+...++|++|.... .. 
T Consensus         1 ~i~i~nls~~~g-~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~-~~-   77 (638)
T PRK10636          1 MIVFSSLQIRRG-VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPA-LP-   77 (638)
T ss_pred             CEEEEEEEEEeC-CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCC-CC-
Confidence            589999999995 567999999999999999999999999999999999999999999999887789999986421 11 


Q ss_pred             CCcHHHHHH-----------------------------Hh---CC-CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHH
Q 024529          135 SSNPLLYMM-----------------------------RC---FP-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKS  181 (266)
Q Consensus       135 ~~~~~~~~~-----------------------------~~---~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkq  181 (266)
                       .+...++.                             ..   .. .....++.++++.+|+.....++++.+|||||||
T Consensus        78 -~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerq  156 (638)
T PRK10636         78 -QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRM  156 (638)
T ss_pred             -CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHH
Confidence             11111000                             00   00 0123567889999999644567899999999999


Q ss_pred             HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          182 RVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       182 Rv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      ||+||+||+.+|+||||||||||||+.++.++.+.|.++++|||+||||++++..+||++++|++|++..|.|+++.|..
T Consensus       157 Rv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~~~  236 (638)
T PRK10636        157 RLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSFEV  236 (638)
T ss_pred             HHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecCCHHHHHH
Confidence            99999999999999999999999999999999999999888999999999999999999999999999888999999865

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=100.00  E-value=3.6e-47  Score=331.28  Aligned_cols=205  Identities=22%  Similarity=0.319  Sum_probs=166.9

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee--------------
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV--------------  119 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~--------------  119 (266)
                      ++|+++|+++.|+ +..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++..              
T Consensus         2 ~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~   80 (253)
T TIGR02323         2 PLLQVSGLSKSYG-GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER   80 (253)
T ss_pred             ceEEEeeeEEEeC-CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHH
Confidence            4799999999995 4568999999999999999999999999999999999999999999886521              


Q ss_pred             ------eEEEEeccccCCCCCCCcHHHHHH----HhC-C--CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHH
Q 024529          120 ------RIAVFSQHHVDGLDLSSNPLLYMM----RCF-P--GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFA  186 (266)
Q Consensus       120 ------~i~~~~q~~~~~~~~~~~~~~~~~----~~~-~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lA  186 (266)
                            .++|++|++...+....+....+.    ... .  ....+.+.++++.+++.....++++..|||||+||++||
T Consensus        81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~la  160 (253)
T TIGR02323        81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIA  160 (253)
T ss_pred             HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHH
Confidence                  379999986322222222222221    111 0  112456788899999964456788999999999999999


Q ss_pred             HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          187 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       187 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      |||+.+|++|||||||++||+.++..+.+.+.+    .+.|||+|||+.+++..+||++++|++|+++ ..|+.+++.
T Consensus       161 ral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~-~~~~~~~~~  237 (253)
T TIGR02323       161 RNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVV-ESGLTDQVL  237 (253)
T ss_pred             HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE-EECCHHHHh
Confidence            999999999999999999999999998887754    2579999999999999999999999999996 567766654

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=100.00  E-value=3e-47  Score=327.58  Aligned_cols=200  Identities=24%  Similarity=0.386  Sum_probs=165.2

Q ss_pred             EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------eeEEE
Q 024529           56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRIAV  123 (266)
Q Consensus        56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~i~~  123 (266)
                      |+++|+++.|+ ++.+|+|+||++.+|++++|+||||||||||+++|+|+++|++|+|.+++.            ..++|
T Consensus         1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~   79 (232)
T cd03218           1 LRAENLSKRYG-KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGY   79 (232)
T ss_pred             CeEEEEEEEeC-CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEE
Confidence            47899999995 456999999999999999999999999999999999999999999988763            24899


Q ss_pred             EeccccCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 024529          124 FSQHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIIL  197 (266)
Q Consensus       124 ~~q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll  197 (266)
                      ++|++..  ....+..+++...  ....    ...++.++++.+++.+ ..++++.+||||||||++|||||+.+|++||
T Consensus        80 ~~q~~~~--~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~la~al~~~p~lll  156 (232)
T cd03218          80 LPQEASI--FRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITH-LRKSKASSLSGGERRRVEIARALATNPKFLL  156 (232)
T ss_pred             ecCCccc--cccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-hhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            9998632  2223444333211  1111    1345678899999974 5678889999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          198 LDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       198 LDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      |||||++||+.+++.+.+.+++.   +.|||++|||++++..+||++++|++|+++ ..|+.+++.
T Consensus       157 lDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~  221 (232)
T cd03218         157 LDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVL-AEGTPEEIA  221 (232)
T ss_pred             ecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEE-EEeCHHHhh
Confidence            99999999999999988877643   569999999999999999999999999996 578877653

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.9e-47  Score=335.25  Aligned_cols=202  Identities=28%  Similarity=0.382  Sum_probs=165.5

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee-------------eE
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-------------RI  121 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-------------~i  121 (266)
                      ||+++|++++|+ ++.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++..             .+
T Consensus         1 ml~~~~l~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i   79 (271)
T PRK13638          1 MLATSDLWFRYQ-DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV   79 (271)
T ss_pred             CeEEEEEEEEcC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence            589999999995 4569999999999999999999999999999999999999999999887632             48


Q ss_pred             EEEeccccCCCCCCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 024529          122 AVFSQHHVDGLDLSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI  195 (266)
Q Consensus       122 ~~~~q~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~l  195 (266)
                      +|++|++...+. ..+...++..  ......    .+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++
T Consensus        80 ~~v~q~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrl~laraL~~~p~l  157 (271)
T PRK13638         80 ATVFQDPEQQIF-YTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQH-FRHQPIQCLSHGQKKRVAIAGALVLQARY  157 (271)
T ss_pred             EEEeeChhhccc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHh-HhcCCchhCCHHHHHHHHHHHHHHcCCCE
Confidence            999998531111 1122222211  111111    234677899999964 45788999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          196 ILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       196 llLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      |||||||++||+.++..+.+.|.+.   +.|||+||||++++..+||++++|++|+++ ..|+.+++.
T Consensus       158 llLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~  224 (271)
T PRK13638        158 LLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQIL-THGAPGEVF  224 (271)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHh
Confidence            9999999999999999988887654   569999999999999999999999999996 578877653

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=100.00  E-value=4.6e-47  Score=327.49  Aligned_cols=201  Identities=23%  Similarity=0.394  Sum_probs=166.2

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe----------eeEEEE
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVF  124 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~i~~~  124 (266)
                      +|+++|++++|+ ++.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++.          ..++|+
T Consensus         1 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~   79 (236)
T TIGR03864         1 ALEVAGLSFAYG-ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVV   79 (236)
T ss_pred             CEEEEeeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEe
Confidence            478999999995 457999999999999999999999999999999999999999999988764          248999


Q ss_pred             eccccCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEE
Q 024529          125 SQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILL  198 (266)
Q Consensus       125 ~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllL  198 (266)
                      +|++..  ....+...++..  .....    ..+.+.++++.+++.. ..++++.+|||||+||++|||||+.+|++|||
T Consensus        80 ~q~~~~--~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrl~laral~~~p~llll  156 (236)
T TIGR03864        80 FQQPTL--DLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAE-RADDKVRELNGGHRRRVEIARALLHRPALLLL  156 (236)
T ss_pred             CCCCCC--cccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            998632  223344443321  11111    2345678899999974 45788899999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          199 DEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       199 DEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      ||||++||+.++..+.+.|.+.    +.|||++|||++++.. ||++++|++|+++ ..|+.+++.+
T Consensus       157 DEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~~G~i~-~~~~~~~~~~  221 (236)
T TIGR03864       157 DEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLHRGRVL-ADGAAAELRG  221 (236)
T ss_pred             cCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEeCCeEE-EeCCHHHHHH
Confidence            9999999999999998887653    5699999999999975 9999999999996 5688776654

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.8e-47  Score=335.79  Aligned_cols=205  Identities=27%  Similarity=0.422  Sum_probs=170.4

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-------------ee
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------VR  120 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------~~  120 (266)
                      ++|+++|+++.|++++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++.             ..
T Consensus         4 ~~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~   83 (283)
T PRK13636          4 YILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES   83 (283)
T ss_pred             ceEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence            57999999999964456999999999999999999999999999999999999999999998763             24


Q ss_pred             EEEEeccccCCCCCCCcHHHHHHHh--CCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 024529          121 IAVFSQHHVDGLDLSSNPLLYMMRC--FPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH  194 (266)
Q Consensus       121 i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~  194 (266)
                      ++|++|++...+ ...+..+++...  ..+..    .+++.++++.+++.+ ..++++.+|||||+||++|||||+.+|+
T Consensus        84 ig~v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~LS~G~~qrl~laraL~~~p~  161 (283)
T PRK13636         84 VGMVFQDPDNQL-FSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEH-LKDKPTHCLSFGQKKRVAIAGVLVMEPK  161 (283)
T ss_pred             EEEEecCcchhh-ccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChh-hhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence            899999863211 223444444211  11111    345778899999974 5678999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          195 IILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       195 lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      +|||||||++||+.++..+.+.+.+.    +.|||++|||++++..+||++++|++|+++ +.|+++++..
T Consensus       162 lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~-~~g~~~~~~~  231 (283)
T PRK13636        162 VLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVI-LQGNPKEVFA  231 (283)
T ss_pred             EEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EeCCHHHHhc
Confidence            99999999999999999888777543    579999999999999999999999999996 6788877643

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=100.00  E-value=3.2e-47  Score=322.84  Aligned_cols=191  Identities=20%  Similarity=0.390  Sum_probs=160.4

Q ss_pred             EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-------eeEEEEeccc
Q 024529           56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------VRIAVFSQHH  128 (266)
Q Consensus        56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------~~i~~~~q~~  128 (266)
                      |+++|+++.|+ ++.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.       ..++|++|++
T Consensus         1 l~~~~l~~~~~-~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~   79 (210)
T cd03269           1 LEVENVTKRFG-RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEER   79 (210)
T ss_pred             CEEEEEEEEEC-CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCC
Confidence            47899999995 456999999999999999999999999999999999999999999998874       3589999986


Q ss_pred             cCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCC
Q 024529          129 VDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS  202 (266)
Q Consensus       129 ~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt  202 (266)
                      ..  ....+..+++..  .....    ..+.+.++++.+++.. ..++++.+||||||||++|||||+.+|++|||||||
T Consensus        80 ~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~  156 (210)
T cd03269          80 GL--YPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSE-YANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPF  156 (210)
T ss_pred             cC--CcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChH-HHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence            32  222234433321  11111    2346778899999974 456788999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529          203 NHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKAT  250 (266)
Q Consensus       203 ~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~  250 (266)
                      ++||+.++..+.+.+++.   +.|||++|||.+++..+||++++|++|+++
T Consensus       157 ~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~  207 (210)
T cd03269         157 SGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAV  207 (210)
T ss_pred             cCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEE
Confidence            999999999998888654   569999999999999999999999999986

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=100.00  E-value=5.3e-47  Score=328.09  Aligned_cols=202  Identities=21%  Similarity=0.363  Sum_probs=168.7

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------eeE
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI  121 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~i  121 (266)
                      ++|+++|+++.|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.            ..+
T Consensus         1 ~~i~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i   79 (242)
T TIGR03411         1 PILYLEGLSVSFD-GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI   79 (242)
T ss_pred             CeEEEEeeEEEcC-CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence            3689999999995 456999999999999999999999999999999999999999999998763            148


Q ss_pred             EEEeccccCCCCCCCcHHHHHHHhCC--------------CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHH
Q 024529          122 AVFSQHHVDGLDLSSNPLLYMMRCFP--------------GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAK  187 (266)
Q Consensus       122 ~~~~q~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAr  187 (266)
                      +|++|++..  ....+..+++.....              .....++.++++.+++.+ ..++++.+|||||+||++|||
T Consensus        80 ~~~~q~~~~--~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~Ge~qrv~lar  156 (242)
T TIGR03411        80 GRKFQKPTV--FENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLAD-EADRLAGLLSHGQKQWLEIGM  156 (242)
T ss_pred             eEecccccc--CCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHH
Confidence            999998532  222344433321100              012346788899999974 557889999999999999999


Q ss_pred             HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          188 ITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       188 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      ||+.+|++|||||||++||+.++..+.+.|+++  +.|||++||+++++..+||++++|++|+++ ..|+.+++.
T Consensus       157 al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~-~~~~~~~~~  230 (242)
T TIGR03411       157 LLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVL-AEGSLDQVQ  230 (242)
T ss_pred             HHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEE-eeCCHHHHh
Confidence            999999999999999999999999999888764  469999999999999999999999999996 678887764

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=3.6e-47  Score=328.87  Aligned_cols=201  Identities=24%  Similarity=0.341  Sum_probs=167.3

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-------------eeE
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------VRI  121 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------~~i  121 (266)
                      +|+++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+++.             ..+
T Consensus         1 ~l~~~~l~~~~~-~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i   79 (240)
T PRK09493          1 MIEFKNVSKHFG-PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA   79 (240)
T ss_pred             CEEEEeEEEEEC-CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence            478999999995 456999999999999999999999999999999999999999999988763             248


Q ss_pred             EEEeccccCCCCCCCcHHHHHHHh---CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 024529          122 AVFSQHHVDGLDLSSNPLLYMMRC---FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH  194 (266)
Q Consensus       122 ~~~~q~~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~  194 (266)
                      +|++|++..  ....+..+++...   ....    ..+.+.++++.+++.+ ..++++.+|||||+||++|||||+.+|+
T Consensus        80 ~~~~q~~~~--~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrv~la~al~~~p~  156 (240)
T PRK09493         80 GMVFQQFYL--FPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAE-RAHHYPSELSGGQQQRVAIARALAVKPK  156 (240)
T ss_pred             EEEeccccc--CCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChH-HHhcChhhcCHHHHHHHHHHHHHhcCCC
Confidence            999998532  2223444433211   1111    2345678899999964 4578889999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          195 IILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       195 lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      +|||||||++||+.++..+.+.|.+.   +.|||++|||++++..+||++++|++|+++ +.|+++++.
T Consensus       157 llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~  224 (240)
T PRK09493        157 LMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIA-EDGDPQVLI  224 (240)
T ss_pred             EEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-eeCCHHHHh
Confidence            99999999999999999988887653   579999999999999999999999999996 678887764

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=100.00  E-value=4.5e-47  Score=328.73  Aligned_cols=202  Identities=24%  Similarity=0.321  Sum_probs=166.5

Q ss_pred             EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEEEE
Q 024529           56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAVF  124 (266)
Q Consensus        56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~~  124 (266)
                      ++++|++++|++...+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.           ..++|+
T Consensus         1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~   80 (242)
T cd03295           1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV   80 (242)
T ss_pred             CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEE
Confidence            468999999954256899999999999999999999999999999999999999999988763           258999


Q ss_pred             eccccCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCc-ccccCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 024529          125 SQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTG-NLALQPMYTLSGGQKSRVAFAKITFKKPHIIL  197 (266)
Q Consensus       125 ~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGqkqRv~lAral~~~p~lll  197 (266)
                      +|++..  ....+..+++..  .....    ..+++.++++.+++.. ...++++.+|||||+||++|||||+.+|++||
T Consensus        81 ~q~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll  158 (242)
T cd03295          81 IQQIGL--FPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLL  158 (242)
T ss_pred             ccCccc--cCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            998632  222344444321  11111    2345778899999974 24678889999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          198 LDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       198 LDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      |||||++||+.++..+.+.|.+.    +.|||++||+.+++..+||++++|++|+++ ..|+.+++.
T Consensus       159 lDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~  224 (242)
T cd03295         159 MDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIV-QVGTPDEIL  224 (242)
T ss_pred             ecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EecCHHHHH
Confidence            99999999999999988877653    569999999999999999999999999996 567777663

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=100.00  E-value=4.2e-47  Score=330.22  Aligned_cols=201  Identities=22%  Similarity=0.358  Sum_probs=166.6

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe----------------
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------------  118 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------------  118 (266)
                      +|+++|++++|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.                
T Consensus         3 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   81 (250)
T PRK11264          3 AIEVKNLVKKFH-GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIR   81 (250)
T ss_pred             cEEEeceEEEEC-CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHH
Confidence            699999999995 456999999999999999999999999999999999999999999987642                


Q ss_pred             ---eeEEEEeccccCCCCCCCcHHHHHHH---hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHH
Q 024529          119 ---VRIAVFSQHHVDGLDLSSNPLLYMMR---CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKI  188 (266)
Q Consensus       119 ---~~i~~~~q~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAra  188 (266)
                         ..++|++|++..  ....+..+++..   .....    ..+.+.++++.+++.. ..++++.+|||||+||++||||
T Consensus        82 ~~~~~i~~v~q~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~Gq~qrv~la~a  158 (250)
T PRK11264         82 QLRQHVGFVFQNFNL--FPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAG-KETSYPRRLSGGQQQRVAIARA  158 (250)
T ss_pred             HhhhhEEEEecCccc--CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcc-hhhCChhhCChHHHHHHHHHHH
Confidence               248999998632  222344443321   11111    1345678899999974 4578889999999999999999


Q ss_pred             HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          189 TFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       189 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      |+.+|++|||||||++||+.++..+.+.|.+.   +.|||++|||.+++..+||++++|++|+++ ..|+.+++.
T Consensus       159 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~  232 (250)
T PRK11264        159 LAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIV-EQGPAKALF  232 (250)
T ss_pred             HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHHh
Confidence            99999999999999999999999988877643   579999999999999999999999999996 568877764

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=100.00  E-value=2.9e-47  Score=340.15  Aligned_cols=195  Identities=23%  Similarity=0.328  Sum_probs=162.2

Q ss_pred             EEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe----------eeEEEEeccccCCC
Q 024529           63 FGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVFSQHHVDGL  132 (266)
Q Consensus        63 ~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~i~~~~q~~~~~~  132 (266)
                      ++|+ ++.+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+++.          ..++|++|++..  
T Consensus         1 k~y~-~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~--   77 (302)
T TIGR01188         1 KVYG-DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASV--   77 (302)
T ss_pred             CeeC-CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCC--
Confidence            3573 456999999999999999999999999999999999999999999998774          248999998642  


Q ss_pred             CCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q 024529          133 DLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD  206 (266)
Q Consensus       133 ~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD  206 (266)
                      ....+..+++..  ...+.    ..+++.++++.+++.+ ..++++.+||||||||++||+||+.+|++|||||||+|||
T Consensus        78 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD  156 (302)
T TIGR01188        78 DEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGE-AADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLD  156 (302)
T ss_pred             CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-HhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence            222344443321  11122    1345788999999974 5678899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHHH
Q 024529          207 LDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM  262 (266)
Q Consensus       207 ~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~  262 (266)
                      +.++..+++.++++   +.|||++||+++++..+||++++|++|+++ +.|+.+++.+.
T Consensus       157 ~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~l~~~  214 (302)
T TIGR01188       157 PRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRII-AEGTPEELKRR  214 (302)
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EECCHHHHHHh
Confidence            99999998887654   579999999999999999999999999997 67888887543

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=100.00  E-value=2.4e-47  Score=326.00  Aligned_cols=200  Identities=23%  Similarity=0.336  Sum_probs=163.8

Q ss_pred             EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------eeEEE
Q 024529           56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRIAV  123 (266)
Q Consensus        56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~i~~  123 (266)
                      |+++|++++|+ +..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.            ..++|
T Consensus         1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~   79 (222)
T cd03224           1 LEVENLNAGYG-KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGY   79 (222)
T ss_pred             CEEeeEEeecC-CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEE
Confidence            57899999995 456999999999999999999999999999999999999999999988763            24899


Q ss_pred             EeccccCCCCCCCcHHHHHHHh---CC-CCcHHHHHHHHHhc-CCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEE
Q 024529          124 FSQHHVDGLDLSSNPLLYMMRC---FP-GVPEQKLRAHLGSF-GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILL  198 (266)
Q Consensus       124 ~~q~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~l~~~-~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllL  198 (266)
                      ++|++..  ....+..+++...   .. ......+.++++.+ ++. ...++++.+||||||||++|||||+.+|++|||
T Consensus        80 ~~q~~~~--~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llll  156 (222)
T cd03224          80 VPEGRRI--FPELTVEENLLLGAYARRRAKRKARLERVYELFPRLK-ERRKQLAGTLSGGEQQMLAIARALMSRPKLLLL  156 (222)
T ss_pred             ecccccc--CCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhh-hhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            9998632  2223444443211   11 11233456677777 464 345788899999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          199 DEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       199 DEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      ||||++||+.++..+++.|.+.   +.|||++|||++++..+||++++|++|++. ..|+.+++.
T Consensus       157 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~  220 (222)
T cd03224         157 DEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVV-LEGTAAELL  220 (222)
T ss_pred             CCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEE-EeCCHHHHh
Confidence            9999999999999998888654   569999999999999999999999999996 568877654

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=100.00  E-value=2.9e-47  Score=323.28  Aligned_cols=190  Identities=21%  Similarity=0.317  Sum_probs=159.6

Q ss_pred             EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe----------eeEEEEe
Q 024529           56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVFS  125 (266)
Q Consensus        56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~i~~~~  125 (266)
                      |+++|+++.|+ +..+|+|+||+|++| +++|+||||||||||+++|+|+++|++|+|.+++.          ..++|++
T Consensus         1 i~~~~~~~~~~-~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~   78 (211)
T cd03264           1 LQLENLTKRYG-KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLP   78 (211)
T ss_pred             CEEEEEEEEEC-CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEec
Confidence            47899999995 456999999999999 99999999999999999999999999999998763          3589999


Q ss_pred             ccccCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 024529          126 QHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD  199 (266)
Q Consensus       126 q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLD  199 (266)
                      |++..  ....+..+++..  .....    ..+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++||||
T Consensus        79 q~~~~--~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~~p~llllD  155 (211)
T cd03264          79 QEFGV--YPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGD-RAKKKIGSLSGGMRRRVGIAQALVGDPSILIVD  155 (211)
T ss_pred             CCCcc--cccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHH-HHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            98642  222344433321  11111    2346778899999974 456888999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529          200 EPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKAT  250 (266)
Q Consensus       200 EPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~  250 (266)
                      |||++||+.++..+.+.|.+.  +.|||+||||++++..+||++++|++|+++
T Consensus       156 EPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~  208 (211)
T cd03264         156 EPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLV  208 (211)
T ss_pred             CCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence            999999999999999888765  479999999999999999999999999986

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=100.00  E-value=2.9e-46  Score=358.65  Aligned_cols=210  Identities=29%  Similarity=0.484  Sum_probs=177.8

Q ss_pred             CCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCC
Q 024529           52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDG  131 (266)
Q Consensus        52 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~  131 (266)
                      +.++|+++|+++.|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+.+...++|++|++. .
T Consensus       319 ~~~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~-~  396 (552)
T TIGR03719       319 GDKVIEAENLSKGFG-DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRD-A  396 (552)
T ss_pred             CCeEEEEeeEEEEEC-CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCcc-c
Confidence            356899999999995 45799999999999999999999999999999999999999999999866668999999852 1


Q ss_pred             CCCCCcHHHHHHHhCC--C--CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCH
Q 024529          132 LDLSSNPLLYMMRCFP--G--VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL  207 (266)
Q Consensus       132 ~~~~~~~~~~~~~~~~--~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~  207 (266)
                      +....+..+++.....  .  ....++.++++.+++.....++++.+|||||||||+|||||+.+|++|||||||+|||+
T Consensus       397 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~  476 (552)
T TIGR03719       397 LDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDV  476 (552)
T ss_pred             cCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Confidence            2233455555432211  1  11334667899999964445788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCEEEEEecCHHHHHhhcCEEEEEeC-CeEEecCCChhHHHHHH
Q 024529          208 DAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSE-GKATPFHGTFHDYKKML  263 (266)
Q Consensus       208 ~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~-G~i~~~~g~~~~~~~~~  263 (266)
                      .++..+.+.|.++++|||+||||++++..+||++++|++ |++..+.|++++|.+..
T Consensus       477 ~~~~~l~~~l~~~~~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~~~  533 (552)
T TIGR03719       477 ETLRALEEALLEFAGCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEEDK  533 (552)
T ss_pred             HHHHHHHHHHHHCCCeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHHHH
Confidence            999999999999878999999999999999999999987 58877899999886543

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.5e-47  Score=342.58  Aligned_cols=206  Identities=18%  Similarity=0.250  Sum_probs=167.9

Q ss_pred             CcEEEEeeEEEcCC---CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC----CCceEEEEcCe--------
Q 024529           54 PIISFSDASFGYPG---GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ----PSSGTVFRSAK--------  118 (266)
Q Consensus        54 ~~l~~~~l~~~y~~---~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~----p~~G~i~~~~~--------  118 (266)
                      ++|+++||++.|+.   ...+|+||||+|.+||+++|+|+||||||||+++|+|+++    |++|+|.+++.        
T Consensus         2 ~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~   81 (330)
T PRK15093          2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR   81 (330)
T ss_pred             CeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence            47999999999942   2468999999999999999999999999999999999986    58999998763        


Q ss_pred             -------eeEEEEeccccCCCCCCCcHHHHHHH---h--CC-----C--CcHHHHHHHHHhcCCCcc--cccCCCCCCCh
Q 024529          119 -------VRIAVFSQHHVDGLDLSSNPLLYMMR---C--FP-----G--VPEQKLRAHLGSFGVTGN--LALQPMYTLSG  177 (266)
Q Consensus       119 -------~~i~~~~q~~~~~~~~~~~~~~~~~~---~--~~-----~--~~~~~~~~~l~~~~l~~~--~~~~~~~~LSg  177 (266)
                             ..++|++|++...++...+....+..   .  ..     .  ...+++.++|+.+++.+.  ..++++.+|||
T Consensus        82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSg  161 (330)
T PRK15093         82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTE  161 (330)
T ss_pred             HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCH
Confidence                   14999999875333333333332221   0  10     0  123467889999999742  34678899999


Q ss_pred             HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecC
Q 024529          178 GQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFH  253 (266)
Q Consensus       178 GqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~  253 (266)
                      ||+|||+|||||+.+|++|||||||++||+.++.++++.|++    .+.|||+||||++++..+||++++|.+|+++ ..
T Consensus       162 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~iv-e~  240 (330)
T PRK15093        162 GECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTV-ET  240 (330)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EE
Confidence            999999999999999999999999999999999998888765    3579999999999999999999999999997 56


Q ss_pred             CChhHHH
Q 024529          254 GTFHDYK  260 (266)
Q Consensus       254 g~~~~~~  260 (266)
                      |+.+++.
T Consensus       241 g~~~~i~  247 (330)
T PRK15093        241 APSKELV  247 (330)
T ss_pred             CCHHHHH
Confidence            7776653

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=9.5e-47  Score=345.13  Aligned_cols=204  Identities=23%  Similarity=0.320  Sum_probs=171.1

Q ss_pred             CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee---------eEEE
Q 024529           53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV---------RIAV  123 (266)
Q Consensus        53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~---------~i~~  123 (266)
                      .++|+++|+++.|+ +..+|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.+++..         .++|
T Consensus        17 ~~~l~l~~v~~~~~-~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~   95 (377)
T PRK11607         17 TPLLEIRNLTKSFD-GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINM   95 (377)
T ss_pred             CceEEEEeEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence            56799999999995 4568999999999999999999999999999999999999999999988752         5999


Q ss_pred             EeccccCCCCCCCcHHHHHHHhC--CCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 024529          124 FSQHHVDGLDLSSNPLLYMMRCF--PGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIIL  197 (266)
Q Consensus       124 ~~q~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll  197 (266)
                      ++|++..  ....+..+++....  ...    ..+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++||
T Consensus        96 vfQ~~~l--fp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~~~~LSgGq~QRVaLARAL~~~P~lLL  172 (377)
T PRK11607         96 MFQSYAL--FPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQE-FAKRKPHQLSGGQRQRVALARSLAKRPKLLL  172 (377)
T ss_pred             EeCCCcc--CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            9998642  23334555443211  111    2356788999999974 5678899999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHh----hcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          198 LDEPSNHLDLDAVEALIQGLV----LFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       198 LDEPt~~LD~~~~~~l~~~l~----~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      |||||++||+..+..+.+.+.    +.+.|+|+||||.+++..+||++++|++|+++ ..|+++++..
T Consensus       173 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~-~~g~~~~~~~  239 (377)
T PRK11607        173 LDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFV-QIGEPEEIYE  239 (377)
T ss_pred             EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEE-EEcCHHHHHh
Confidence            999999999999988776554    34679999999999999999999999999997 5688877643

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=100.00  E-value=5.1e-47  Score=322.24  Aligned_cols=191  Identities=28%  Similarity=0.415  Sum_probs=158.6

Q ss_pred             EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe--------------eeE
Q 024529           56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------VRI  121 (266)
Q Consensus        56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------~~i  121 (266)
                      |+++|+++.|++++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.              ..+
T Consensus         1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i   80 (214)
T cd03292           1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI   80 (214)
T ss_pred             CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence            468999999964456999999999999999999999999999999999999999999988763              148


Q ss_pred             EEEeccccCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 024529          122 AVFSQHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI  195 (266)
Q Consensus       122 ~~~~q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~l  195 (266)
                      +|++|++..  ....+..+++...  ....    ..+++.++++.+++.. ..++++.+||||||||++|||||+.+|++
T Consensus        81 ~~v~q~~~~--~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~l  157 (214)
T cd03292          81 GVVFQDFRL--LPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSH-KHRALPAELSGGEQQRVAIARAIVNSPTI  157 (214)
T ss_pred             EEEecCchh--ccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-HhhCChhhcCHHHHHHHHHHHHHHcCCCE
Confidence            999998632  2223344433211  1111    2345778899999974 45678899999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeE
Q 024529          196 ILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKA  249 (266)
Q Consensus       196 llLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i  249 (266)
                      |||||||++||+.++..+.+.+.+.   +.|||+||||.+++..+||++++|++|++
T Consensus       158 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~  214 (214)
T cd03292         158 LIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL  214 (214)
T ss_pred             EEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            9999999999999999998887654   57999999999999999999999999874

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=6.8e-47  Score=363.17  Aligned_cols=205  Identities=23%  Similarity=0.389  Sum_probs=174.0

Q ss_pred             CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCC
Q 024529           53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGL  132 (266)
Q Consensus        53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~  132 (266)
                      +++|+++||++.|++++.+|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+.+...++|++|++... 
T Consensus         4 ~~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~-   82 (556)
T PRK11819          4 QYIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLD-   82 (556)
T ss_pred             cEEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCC-
Confidence            4589999999999524679999999999999999999999999999999999999999999987777899999986321 


Q ss_pred             CCCCcHHHHHHHh-----------------CC-C------------------------CcHHHHHHHHHhcCCCcccccC
Q 024529          133 DLSSNPLLYMMRC-----------------FP-G------------------------VPEQKLRAHLGSFGVTGNLALQ  170 (266)
Q Consensus       133 ~~~~~~~~~~~~~-----------------~~-~------------------------~~~~~~~~~l~~~~l~~~~~~~  170 (266)
                       ...++.+++...                 .. .                        ....++.++++.+++. . .++
T Consensus        83 -~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~-~~~  159 (556)
T PRK11819         83 -PEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP-P-WDA  159 (556)
T ss_pred             -CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC-c-ccC
Confidence             122332222100                 00 0                        0134577788999995 3 578


Q ss_pred             CCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529          171 PMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKAT  250 (266)
Q Consensus       171 ~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~  250 (266)
                      ++.+|||||||||+|||||+.+|++||||||||+||+.++.++.+.|+++++|||+||||++++..+||+|++|++|+++
T Consensus       160 ~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i~~l~~g~i~  239 (556)
T PRK11819        160 KVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWILELDRGRGI  239 (556)
T ss_pred             chhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEeCCEEE
Confidence            89999999999999999999999999999999999999999999999988889999999999999999999999999987


Q ss_pred             ecCCChhHHHH
Q 024529          251 PFHGTFHDYKK  261 (266)
Q Consensus       251 ~~~g~~~~~~~  261 (266)
                      .+.|++++|.+
T Consensus       240 ~~~g~~~~~~~  250 (556)
T PRK11819        240 PWEGNYSSWLE  250 (556)
T ss_pred             EecCCHHHHHH
Confidence            68899998754

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.4e-47  Score=362.17  Aligned_cols=204  Identities=25%  Similarity=0.437  Sum_probs=172.3

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCC
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDL  134 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~  134 (266)
                      ||+++|++++|+ ++.+|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+++...++|++|++....  
T Consensus         1 ml~i~~ls~~~~-~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~--   77 (530)
T PRK15064          1 MLSTANITMQFG-AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFE--   77 (530)
T ss_pred             CEEEEEEEEEeC-CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCC--
Confidence            589999999995 45799999999999999999999999999999999999999999999987778999999863221  


Q ss_pred             CCcHHHHHHHh----------------CC----------------------CCcHHHHHHHHHhcCCCcccccCCCCCCC
Q 024529          135 SSNPLLYMMRC----------------FP----------------------GVPEQKLRAHLGSFGVTGNLALQPMYTLS  176 (266)
Q Consensus       135 ~~~~~~~~~~~----------------~~----------------------~~~~~~~~~~l~~~~l~~~~~~~~~~~LS  176 (266)
                      ..+..+++...                ..                      .....++.++++.+|+.+...++++.+||
T Consensus        78 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS  157 (530)
T PRK15064         78 EFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVA  157 (530)
T ss_pred             CCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcC
Confidence            12222221100                00                      01134577889999997544457889999


Q ss_pred             hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCCh
Q 024529          177 GGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTF  256 (266)
Q Consensus       177 gGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~  256 (266)
                      |||||||+|||||+.+|++|||||||++||+.++.++.+.|.+.+.|||+||||++++..+||++++|++|+++.+.|++
T Consensus       158 gGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~~~g~~  237 (530)
T PRK15064        158 PGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGELRVYPGNY  237 (530)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEeCCEEEEecCCH
Confidence            99999999999999999999999999999999999999999888889999999999999999999999999996578999


Q ss_pred             hHHHH
Q 024529          257 HDYKK  261 (266)
Q Consensus       257 ~~~~~  261 (266)
                      ++|.+
T Consensus       238 ~~~~~  242 (530)
T PRK15064        238 DEYMT  242 (530)
T ss_pred             HHHHH
Confidence            98864

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.1e-47  Score=329.67  Aligned_cols=192  Identities=26%  Similarity=0.356  Sum_probs=160.8

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee------eEEEEeccc
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV------RIAVFSQHH  128 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~------~i~~~~q~~  128 (266)
                      ||+++|+++.|+ +..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++..      .++|++|++
T Consensus         1 ml~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~   79 (255)
T PRK11248          1 MLQISHLYADYG-GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNE   79 (255)
T ss_pred             CEEEEEEEEEeC-CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCC
Confidence            589999999995 4569999999999999999999999999999999999999999999987642      489999985


Q ss_pred             cCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCC
Q 024529          129 VDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS  202 (266)
Q Consensus       129 ~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt  202 (266)
                      ..  ....+..+++..  .....    ..+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||||
T Consensus        80 ~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt  156 (255)
T PRK11248         80 GL--LPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEG-AEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPF  156 (255)
T ss_pred             cc--CCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChh-HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence            32  222344444321  11111    1345788999999974 456888999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEe--CCeEE
Q 024529          203 NHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVS--EGKAT  250 (266)
Q Consensus       203 ~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~--~G~i~  250 (266)
                      ++||+.++..+.+.|.+.    +.|||+||||++++..+||++++|+  +|+++
T Consensus       157 ~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~  210 (255)
T PRK11248        157 GALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVV  210 (255)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEE
Confidence            999999999998888653    5699999999999999999999998  48885

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=9.3e-47  Score=329.00  Aligned_cols=202  Identities=22%  Similarity=0.391  Sum_probs=167.2

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee------------eE
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV------------RI  121 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~------------~i  121 (266)
                      ++|+++|+++.|+ +..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++..            .+
T Consensus         4 ~~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i   82 (255)
T PRK11300          4 PLLSVSGLMMRFG-GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV   82 (255)
T ss_pred             ceEEEeeEEEEEC-CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence            4799999999995 4579999999999999999999999999999999999999999999987641            37


Q ss_pred             EEEeccccCCCCCCCcHHHHHHHh-------------C-----CC---CcHHHHHHHHHhcCCCcccccCCCCCCChHHH
Q 024529          122 AVFSQHHVDGLDLSSNPLLYMMRC-------------F-----PG---VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQK  180 (266)
Q Consensus       122 ~~~~q~~~~~~~~~~~~~~~~~~~-------------~-----~~---~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqk  180 (266)
                      +|++|++..  ....+..+++...             .     ..   ...+.+.++++.+++.+ ..++++.+||||||
T Consensus        83 ~~~~q~~~~--~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~  159 (255)
T PRK11300         83 VRTFQHVRL--FREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLE-HANRQAGNLAYGQQ  159 (255)
T ss_pred             EEeccCccc--CCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhh-hhhCChhhCCHHHH
Confidence            888998632  2223444333211             0     00   01235677889999964 56788999999999


Q ss_pred             HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCCh
Q 024529          181 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTF  256 (266)
Q Consensus       181 qRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~  256 (266)
                      ||++|||||+.+|++|||||||+|||+.++..+.+.|.+.    +.|||++||+++++..+||++++|++|+++ +.|+.
T Consensus       160 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~-~~~~~  238 (255)
T PRK11300        160 RRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPL-ANGTP  238 (255)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEE-ecCCH
Confidence            9999999999999999999999999999999988877643    569999999999999999999999999996 67887


Q ss_pred             hHHH
Q 024529          257 HDYK  260 (266)
Q Consensus       257 ~~~~  260 (266)
                      +++.
T Consensus       239 ~~~~  242 (255)
T PRK11300        239 EEIR  242 (255)
T ss_pred             HHHh
Confidence            7764

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.8e-47  Score=333.18  Aligned_cols=204  Identities=28%  Similarity=0.445  Sum_probs=169.1

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEE
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA  122 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~  122 (266)
                      .+++++|++++|++...+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+++.           ..++
T Consensus         2 ~~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~   81 (277)
T PRK13652          2 HLIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG   81 (277)
T ss_pred             ceEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence            36899999999964456899999999999999999999999999999999999999999998764           1489


Q ss_pred             EEeccccCCCCCCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 024529          123 VFSQHHVDGLDLSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII  196 (266)
Q Consensus       123 ~~~q~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll  196 (266)
                      |++|++...+ ...+..+++..  ......    .+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|
T Consensus        82 ~v~q~~~~~~-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~Gq~qrl~laraL~~~p~ll  159 (277)
T PRK13652         82 LVFQNPDDQI-FSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEE-LRDRVPHHLSGGEKKRVAIAGVIAMEPQVL  159 (277)
T ss_pred             EEecCccccc-ccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChh-HhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence            9999863111 12344444321  111122    245778899999974 567889999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          197 LLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       197 lLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      ||||||++||+.++..+.+.+.+.    +.|||++|||++++..+||++++|++|+++ +.|+++++.
T Consensus       160 ilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~-~~g~~~~~~  226 (277)
T PRK13652        160 VLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIV-AYGTVEEIF  226 (277)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEE-EECCHHHHh
Confidence            999999999999999988877642    579999999999999999999999999996 678888774

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.1e-47  Score=331.40  Aligned_cols=204  Identities=22%  Similarity=0.329  Sum_probs=169.1

Q ss_pred             CCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------ee
Q 024529           52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR  120 (266)
Q Consensus        52 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~  120 (266)
                      .+++|+++|+++.|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.           ..
T Consensus         8 ~~~~l~i~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~   86 (265)
T PRK10575          8 SDTTFALRNVSFRVP-GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARK   86 (265)
T ss_pred             CCceEEEeeEEEEEC-CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhh
Confidence            346899999999995 457999999999999999999999999999999999999999999998773           24


Q ss_pred             EEEEeccccCCCCCCCcHHHHHHHhC----------CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 024529          121 IAVFSQHHVDGLDLSSNPLLYMMRCF----------PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF  190 (266)
Q Consensus       121 i~~~~q~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~  190 (266)
                      ++|++|++..  ....+..+++....          .....+++.++++.+++.+ ..++++.+|||||+||++|||||+
T Consensus        87 i~~v~q~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~laral~  163 (265)
T PRK10575         87 VAYLPQQLPA--AEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKP-LAHRLVDSLSGGERQRAWIAMLVA  163 (265)
T ss_pred             eEEeccCCCC--CCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHH-HhcCCcccCCHHHHHHHHHHHHHh
Confidence            8999997532  22234444443210          0112345788899999964 567888999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          191 KKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       191 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      .+|+||||||||++||+.++..+.+.|.+.    +.|||++||+++++..+||++++|++|+++ ..|+.+++.
T Consensus       164 ~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~-~~~~~~~~~  236 (265)
T PRK10575        164 QDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMI-AQGTPAELM  236 (265)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEE-EecCHHHhc
Confidence            999999999999999999999888877543    579999999999999999999999999996 567777664

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.1e-46  Score=324.62  Aligned_cols=193  Identities=26%  Similarity=0.381  Sum_probs=160.1

Q ss_pred             CcEEEEeeEEEcCCC---CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------
Q 024529           54 PIISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------  118 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------  118 (266)
                      ++|+++|+++.|+++   ..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|++++.            
T Consensus         4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~   83 (233)
T PRK11629          4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE   83 (233)
T ss_pred             ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHH
Confidence            579999999999642   46899999999999999999999999999999999999999999998762            


Q ss_pred             ---eeEEEEeccccCCCCCCCcHHHHHHH--hCCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHH
Q 024529          119 ---VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT  189 (266)
Q Consensus       119 ---~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral  189 (266)
                         ..++|++|++..  ....+..+++..  ....    ...+++.++++.+++.+ ..++++.+||||||||++|||||
T Consensus        84 ~~~~~i~~v~q~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgG~~qrl~la~al  160 (233)
T PRK11629         84 LRNQKLGFIYQFHHL--LPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEH-RANHRPSELSGGERQRVAIARAL  160 (233)
T ss_pred             HHhccEEEEecCccc--CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-hhhCChhhCCHHHHHHHHHHHHH
Confidence               248999998632  222244444321  1111    12346788999999974 45678899999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529          190 FKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKAT  250 (266)
Q Consensus       190 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~  250 (266)
                      +.+|++|||||||++||+.++..+.+.|.+.    +.|||+||||++++.. +|++++|++|+++
T Consensus       161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~-~~~~~~l~~G~i~  224 (233)
T PRK11629        161 VNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKR-MSRQLEMRDGRLT  224 (233)
T ss_pred             hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh-hCEEEEEECCEEE
Confidence            9999999999999999999999988887653    5699999999999986 5799999999986

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.9e-47  Score=340.63  Aligned_cols=205  Identities=20%  Similarity=0.298  Sum_probs=167.4

Q ss_pred             cEEEEeeEEEcCCC---CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC----CCceEEEEcCee--------
Q 024529           55 IISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ----PSSGTVFRSAKV--------  119 (266)
Q Consensus        55 ~l~~~~l~~~y~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~----p~~G~i~~~~~~--------  119 (266)
                      +|+++||++.|++.   ..+|+||||+|++||+++|+|+||||||||+++|+|+++    |++|+|.+++..        
T Consensus         3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~   82 (326)
T PRK11022          3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE   82 (326)
T ss_pred             eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence            68999999999642   358999999999999999999999999999999999997    489999988742        


Q ss_pred             -------eEEEEeccccCCCCCCCcHHHHHH---HhCCC----CcHHHHHHHHHhcCCCc--ccccCCCCCCChHHHHHH
Q 024529          120 -------RIAVFSQHHVDGLDLSSNPLLYMM---RCFPG----VPEQKLRAHLGSFGVTG--NLALQPMYTLSGGQKSRV  183 (266)
Q Consensus       120 -------~i~~~~q~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~l~~~~l~~--~~~~~~~~~LSgGqkqRv  183 (266)
                             .++|++|++...++...+....+.   .....    ...+++.++++.+++.+  ...++++.+|||||+|||
T Consensus        83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv  162 (326)
T PRK11022         83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRV  162 (326)
T ss_pred             HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHH
Confidence                   489999987433333333322211   11111    12456788999999964  235678899999999999


Q ss_pred             HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529          184 AFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  259 (266)
Q Consensus       184 ~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  259 (266)
                      +|||||+.+|++||+||||++||+.++..+++.|.+.    +.|+|+||||++.+..+||+|++|.+|+++ ..|+.+++
T Consensus       163 ~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~iv-e~g~~~~~  241 (326)
T PRK11022        163 MIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVV-ETGKAHDI  241 (326)
T ss_pred             HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHH
Confidence            9999999999999999999999999999988877643    569999999999999999999999999997 46776665


Q ss_pred             H
Q 024529          260 K  260 (266)
Q Consensus       260 ~  260 (266)
                      .
T Consensus       242 ~  242 (326)
T PRK11022        242 F  242 (326)
T ss_pred             h
Confidence            3

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=100.00  E-value=8.1e-47  Score=322.63  Aligned_cols=192  Identities=23%  Similarity=0.383  Sum_probs=158.4

Q ss_pred             cEEEEeeEEEcCCC---CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-------------
Q 024529           55 IISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------  118 (266)
Q Consensus        55 ~l~~~~l~~~y~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------  118 (266)
                      +|+++|+++.|+++   ..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.             
T Consensus         1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~   80 (221)
T TIGR02211         1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKL   80 (221)
T ss_pred             CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHH
Confidence            47899999999542   46899999999999999999999999999999999999999999988752             


Q ss_pred             --eeEEEEeccccCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 024529          119 --VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF  190 (266)
Q Consensus       119 --~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~  190 (266)
                        ..++|++|++..  ....+..+++..  .....    ..+++.++++.+++.+ ..++++.+||||||||++|||||+
T Consensus        81 ~~~~i~~v~q~~~~--~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~  157 (221)
T TIGR02211        81 RNKKLGFIYQFHHL--LPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEH-RINHRPSELSGGERQRVAIARALV  157 (221)
T ss_pred             HHhcEEEEeccccc--CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-hhhCChhhCCHHHHHHHHHHHHHh
Confidence              248999998632  222344444321  11111    2345778999999974 457888999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529          191 KKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKAT  250 (266)
Q Consensus       191 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~  250 (266)
                      .+|++|||||||++||+.++..+.+.|.+.    +.|||++|||++++.. ||++++|++|+++
T Consensus       158 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~l~~G~i~  220 (221)
T TIGR02211       158 NQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVLEMKDGQLF  220 (221)
T ss_pred             CCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEEEEeCCEec
Confidence            999999999999999999999998887643    5699999999999875 8999999999874

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.2e-47  Score=333.83  Aligned_cols=204  Identities=28%  Similarity=0.372  Sum_probs=166.6

Q ss_pred             cEEEEeeEEEcCCC----CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------
Q 024529           55 IISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------  118 (266)
Q Consensus        55 ~l~~~~l~~~y~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------  118 (266)
                      .|+++|+++.|++.    ..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.            
T Consensus         2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~   81 (280)
T PRK13649          2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK   81 (280)
T ss_pred             eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence            38999999999642    35899999999999999999999999999999999999999999988763            


Q ss_pred             ---eeEEEEeccccCCCCCCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHH
Q 024529          119 ---VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT  189 (266)
Q Consensus       119 ---~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral  189 (266)
                         ..++|++|++...+. ..+..+++..  ......    .+.+.++++.+++.....++++.+||||||||++|||||
T Consensus        82 ~~~~~i~~~~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al  160 (280)
T PRK13649         82 QIRKKVGLVFQFPESQLF-EETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGIL  160 (280)
T ss_pred             HHHhheEEEeeChhhhhc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence               248999998521111 2244444321  111111    234667889999964455788999999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          190 FKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       190 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      +.+|++|||||||++||+.++..+.+.|.++   +.|||+||||++++..+||++++|++|+++ ..|+.+++.
T Consensus       161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~  233 (280)
T PRK13649        161 AMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLV-LSGKPKDIF  233 (280)
T ss_pred             HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEE-EeCCHHHHh
Confidence            9999999999999999999999998887654   579999999999999999999999999996 568877653

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=100.00  E-value=9.1e-47  Score=329.89  Aligned_cols=201  Identities=26%  Similarity=0.382  Sum_probs=167.6

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEEE
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV  123 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~  123 (266)
                      +|+++|+++.|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.           ..++|
T Consensus         2 ~l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~   80 (258)
T PRK13548          2 MLEARNLSVRLG-GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAV   80 (258)
T ss_pred             eEEEEeEEEEeC-CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEE
Confidence            689999999995 456999999999999999999999999999999999999999999998774           24899


Q ss_pred             EeccccCCCCCCCcHHHHHHHhC--CC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHc------c
Q 024529          124 FSQHHVDGLDLSSNPLLYMMRCF--PG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF------K  191 (266)
Q Consensus       124 ~~q~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~------~  191 (266)
                      ++|++..  ....+..+++....  ..    ...+.+.++++.+++.+ ..++++.+||||||||++|||||+      .
T Consensus        81 ~~q~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGe~qrv~la~al~~~~~~~~  157 (258)
T PRK13548         81 LPQHSSL--SFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAH-LAGRDYPQLSGGEQQRVQLARVLAQLWEPDG  157 (258)
T ss_pred             EccCCcC--CCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHh-HhcCCcccCCHHHHHHHHHHHHHhcccccCC
Confidence            9998532  22335555443211  11    12345778899999964 567889999999999999999999      5


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          192 KPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      +|++|||||||++||+.++..+.+.|.+    .+.|||++|||++++..+||++++|++|+++ ..|+++++.
T Consensus       158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~  229 (258)
T PRK13548        158 PPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLV-ADGTPAEVL  229 (258)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEE-eeCCHHHHh
Confidence            9999999999999999999988887764    3569999999999999999999999999996 578877654

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=100.00  E-value=4.9e-47  Score=325.96  Aligned_cols=201  Identities=19%  Similarity=0.261  Sum_probs=164.1

Q ss_pred             EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------eeEEE
Q 024529           56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRIAV  123 (266)
Q Consensus        56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~i~~  123 (266)
                      |+++||++.|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.            ..++|
T Consensus         1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~   79 (230)
T TIGR03410         1 LEVSNLNVYYG-QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAY   79 (230)
T ss_pred             CEEEeEEEEeC-CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEE
Confidence            57899999995 457999999999999999999999999999999999999999999998762            24899


Q ss_pred             EeccccCCCCCCCcHHHHHHHh--CCCC-cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 024529          124 FSQHHVDGLDLSSNPLLYMMRC--FPGV-PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE  200 (266)
Q Consensus       124 ~~q~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDE  200 (266)
                      ++|++..  ....+...++...  .... ..+...++++.++......++++.+|||||+||++|||||+.+|++|||||
T Consensus        80 ~~q~~~~--~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDE  157 (230)
T TIGR03410        80 VPQGREI--FPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDE  157 (230)
T ss_pred             eccCCcc--cCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence            9998642  2223444433211  1111 233456677777632244678899999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          201 PSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       201 Pt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      ||++||+.++..+.+.|.+.    +.|||++||+++++..+||++++|++|+++ ..|+.+++.
T Consensus       158 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~-~~~~~~~~~  220 (230)
T TIGR03410       158 PTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVV-ASGAGDELD  220 (230)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHcC
Confidence            99999999999998887653    569999999999999999999999999996 678887763

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.1e-46  Score=326.15  Aligned_cols=201  Identities=18%  Similarity=0.265  Sum_probs=167.6

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe----------------
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------------  118 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------------  118 (266)
                      +|+++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+++.                
T Consensus         2 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   80 (242)
T PRK11124          2 SIQLNGINCFYG-AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIREL   80 (242)
T ss_pred             EEEEEeeEEEEC-CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHH
Confidence            589999999995 457999999999999999999999999999999999999999999998663                


Q ss_pred             -eeEEEEeccccCCCCCCCcHHHHHHH---hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 024529          119 -VRIAVFSQHHVDGLDLSSNPLLYMMR---CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF  190 (266)
Q Consensus       119 -~~i~~~~q~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~  190 (266)
                       ..++|++|++..  ....+..+++..   .....    ...++.++++.+|+.. ..++++.+||||||||++|||||+
T Consensus        81 ~~~i~~~~q~~~~--~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrv~laral~  157 (242)
T PRK11124         81 RRNVGMVFQQYNL--WPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKP-YADRFPLHLSGGQQQRVAIARALM  157 (242)
T ss_pred             HhheEEEecCccc--cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-hhhCChhhCCHHHHHHHHHHHHHh
Confidence             148999998632  222344444321   11111    1345778899999964 567888999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          191 KKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       191 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      .+|++|||||||++||+.++..+.+.+++.   +.|||++|||.+++..+||++++|++|+++ +.|+++++.
T Consensus       158 ~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~-~~~~~~~~~  229 (242)
T PRK11124        158 MEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIV-EQGDASCFT  229 (242)
T ss_pred             cCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHhc
Confidence            999999999999999999999988877653   579999999999999999999999999996 678887764

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8e-47  Score=329.61  Aligned_cols=200  Identities=27%  Similarity=0.407  Sum_probs=167.2

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee-----------eEEE
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-----------RIAV  123 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-----------~i~~  123 (266)
                      +|+++|++++|+ ++.+|+++||++++|++++|+|+||||||||+++|+|+++|++|+|.+++..           .++|
T Consensus         2 ~l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   80 (255)
T PRK11231          2 TLRTENLTVGYG-TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL   80 (255)
T ss_pred             EEEEEeEEEEEC-CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence            689999999995 4579999999999999999999999999999999999999999999987742           4899


Q ss_pred             EeccccCCCCCCCcHHHHHHHh-------CC---CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCC
Q 024529          124 FSQHHVDGLDLSSNPLLYMMRC-------FP---GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP  193 (266)
Q Consensus       124 ~~q~~~~~~~~~~~~~~~~~~~-------~~---~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p  193 (266)
                      ++|++...  ...+..+++...       +.   ....+++.++++.+++.. ..++++.+|||||+||++|||||+.+|
T Consensus        81 ~~q~~~~~--~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p  157 (255)
T PRK11231         81 LPQHHLTP--EGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINH-LADRRLTDLSGGQRQRAFLAMVLAQDT  157 (255)
T ss_pred             ecccCCCC--CCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHH-HHcCCcccCCHHHHHHHHHHHHHhcCC
Confidence            99986322  222344433211       11   112345778899999964 467889999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529          194 HIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  259 (266)
Q Consensus       194 ~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  259 (266)
                      ++|||||||+|||+.++..+.+.|.+.   +.|||++|||++++.++||++++|++|+++ ..|+.+++
T Consensus       158 ~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~  225 (255)
T PRK11231        158 PVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVM-AQGTPEEV  225 (255)
T ss_pred             CEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEE-EEcCHHHh
Confidence            999999999999999999998887653   569999999999999999999999999996 56777765

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=100.00  E-value=1.2e-46  Score=323.12  Aligned_cols=194  Identities=23%  Similarity=0.312  Sum_probs=160.4

Q ss_pred             CCcEEEEeeEEEcCCC---CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------
Q 024529           53 PPIISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------  118 (266)
Q Consensus        53 ~~~l~~~~l~~~y~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------  118 (266)
                      +++|+++|++++|++.   ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.           
T Consensus         4 ~~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~   83 (228)
T PRK10584          4 ENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARA   83 (228)
T ss_pred             CceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHH
Confidence            3579999999999642   24899999999999999999999999999999999999999999988763           


Q ss_pred             ----eeEEEEeccccCCCCCCCcHHHHHHH--hCCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHH
Q 024529          119 ----VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKI  188 (266)
Q Consensus       119 ----~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAra  188 (266)
                          ..++|++|++..  ....+..+++..  ....    ...+++.++++.+++.+ ..++++.+|||||+||++||||
T Consensus        84 ~~~~~~i~~~~q~~~l--~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~Ge~qrl~la~a  160 (228)
T PRK10584         84 KLRAKHVGFVFQSFML--IPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGK-RLDHLPAQLSGGEQQRVALARA  160 (228)
T ss_pred             HHHhheEEEEEccccc--CCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHh-HhhCChhhCCHHHHHHHHHHHH
Confidence                258999998632  222344444321  1111    12356788899999974 4567889999999999999999


Q ss_pred             HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529          189 TFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKAT  250 (266)
Q Consensus       189 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~  250 (266)
                      |+.+|++|||||||+|||+.++..+.+.|.++    +.|||++|||.+++. .||++++|++|+++
T Consensus       161 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~i~~l~~g~i~  225 (228)
T PRK10584        161 FNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAA-RCDRRLRLVNGQLQ  225 (228)
T ss_pred             HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEE
Confidence            99999999999999999999999998887543    569999999999986 59999999999985

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=100.00  E-value=8e-47  Score=326.97  Aligned_cols=202  Identities=23%  Similarity=0.362  Sum_probs=163.8

Q ss_pred             EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCC--CCCceEEEEcCe------------eeE
Q 024529           56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL--QPSSGTVFRSAK------------VRI  121 (266)
Q Consensus        56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--~p~~G~i~~~~~------------~~i  121 (266)
                      |+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|++  +|++|+|.+++.            ..+
T Consensus         1 l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i   79 (243)
T TIGR01978         1 LKIKDLHVSVE-DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGL   79 (243)
T ss_pred             CeEeeEEEEEC-CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccce
Confidence            47899999995 456899999999999999999999999999999999995  799999998763            137


Q ss_pred             EEEeccccCCCCCCCcHHHHHH---HhCC------CCc----HHHHHHHHHhcCCCcccccCCCC-CCChHHHHHHHHHH
Q 024529          122 AVFSQHHVDGLDLSSNPLLYMM---RCFP------GVP----EQKLRAHLGSFGVTGNLALQPMY-TLSGGQKSRVAFAK  187 (266)
Q Consensus       122 ~~~~q~~~~~~~~~~~~~~~~~---~~~~------~~~----~~~~~~~l~~~~l~~~~~~~~~~-~LSgGqkqRv~lAr  187 (266)
                      +|++|++...  ...+..+++.   ....      ...    .+++.++++.+++.....++++. +||||||||++|||
T Consensus        80 ~~v~q~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~  157 (243)
T TIGR01978        80 FLAFQYPEEI--PGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQ  157 (243)
T ss_pred             Eeeecccccc--CCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHH
Confidence            8999986422  2223332221   1100      011    24577889999997444567776 59999999999999


Q ss_pred             HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhh-cCEEEEEeCCeEEecCCChhHHHH
Q 024529          188 ITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGS-VEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       188 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~-~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      ||+.+|++|||||||++||+.++..+.+.|.+.   +.|||+||||++++..+ ||++++|++|+++ ..|+++++.+
T Consensus       158 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~  234 (243)
T TIGR01978       158 MALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIV-KSGDVELAKE  234 (243)
T ss_pred             HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEE-EecCHHHhcc
Confidence            999999999999999999999999998888764   56999999999999988 8999999999996 6788877653

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.2e-47  Score=327.59  Aligned_cols=201  Identities=21%  Similarity=0.317  Sum_probs=167.1

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------eeEE
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRIA  122 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~i~  122 (266)
                      +++++|+++.|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.            ..++
T Consensus         3 ~l~~~~l~~~~~-~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~   81 (241)
T PRK10895          3 TLTAKNLAKAYK-GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIG   81 (241)
T ss_pred             eEEEeCcEEEeC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeE
Confidence            689999999995 457999999999999999999999999999999999999999999998762            2489


Q ss_pred             EEeccccCCCCCCCcHHHHHHHh---CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 024529          123 VFSQHHVDGLDLSSNPLLYMMRC---FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI  195 (266)
Q Consensus       123 ~~~q~~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~l  195 (266)
                      |++|++..  ....+..+++...   ....    ....+.++++.+++.. ..++++.+|||||+||++|||||+.+|++
T Consensus        82 ~~~q~~~~--~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~l  158 (241)
T PRK10895         82 YLPQEASI--FRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEH-LRDSMGQSLSGGERRRVEIARALAANPKF  158 (241)
T ss_pred             EeccCCcc--cccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHH-HhhcchhhCCHHHHHHHHHHHHHhcCCCE
Confidence            99998632  2223444443211   1111    2345778899999964 45788899999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          196 ILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       196 llLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      |||||||++||+.++..+.+.+.+   .+.|||++||+++++..+||++++|++|+++ ..|+++++.
T Consensus       159 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~~  225 (241)
T PRK10895        159 ILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLI-AHGTPTEIL  225 (241)
T ss_pred             EEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEE-eeCCHHHHh
Confidence            999999999999999887776653   4679999999999999999999999999996 578888764

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=9.3e-48  Score=323.47  Aligned_cols=203  Identities=28%  Similarity=0.404  Sum_probs=171.0

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------eeE
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI  121 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~i  121 (266)
                      +++++++++++| |+-.+++||||++++||+++|+||||||||||+|+|+|+++|++|+|.+.++            ..+
T Consensus         3 ~lL~v~~l~k~F-GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi   81 (250)
T COG0411           3 PLLEVRGLSKRF-GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI   81 (250)
T ss_pred             ceeeeccceeec-CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence            578999999999 5667999999999999999999999999999999999999999999998875            246


Q ss_pred             EEEeccccCCCCCCCcHHHHHHHh------------CC------CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHH
Q 024529          122 AVFSQHHVDGLDLSSNPLLYMMRC------------FP------GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRV  183 (266)
Q Consensus       122 ~~~~q~~~~~~~~~~~~~~~~~~~------------~~------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv  183 (266)
                      +.-||....+  ...++++++.-.            .+      ....+++.++|+.+|+.+ ..+.+.++||+||++|+
T Consensus        82 ~RTFQ~~rlF--~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~-~a~~~A~~LsyG~qR~L  158 (250)
T COG0411          82 ARTFQITRLF--PGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGE-LADRPAGNLSYGQQRRL  158 (250)
T ss_pred             eeeccccccc--CCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCch-hhcchhhcCChhHhHHH
Confidence            7778875322  223344433211            00      112456788999999985 67899999999999999


Q ss_pred             HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529          184 AFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  259 (266)
Q Consensus       184 ~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  259 (266)
                      .|||||+.+|++||||||.+||.+....++.+.+.+.    +.||++|.||++.+..+||||+||+.|+++ ++|++++.
T Consensus       159 EIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~I-AeG~P~eV  237 (250)
T COG0411         159 EIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVI-AEGTPEEV  237 (250)
T ss_pred             HHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCc-ccCCHHHH
Confidence            9999999999999999999999999888887776543    469999999999999999999999999997 79999987


Q ss_pred             HH
Q 024529          260 KK  261 (266)
Q Consensus       260 ~~  261 (266)
                      .+
T Consensus       238 ~~  239 (250)
T COG0411         238 RN  239 (250)
T ss_pred             hc
Confidence            53

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.5e-46  Score=326.39  Aligned_cols=201  Identities=21%  Similarity=0.262  Sum_probs=166.6

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCC-----ceEEEEcCe-----------
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS-----SGTVFRSAK-----------  118 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~~~-----------  118 (266)
                      +|+++|++++|+ +..+++|+||+|++||+++|+|+||||||||+++|+|+++|+     +|+|.+++.           
T Consensus         1 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~   79 (247)
T TIGR00972         1 AIEIENLNLFYG-EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE   79 (247)
T ss_pred             CEEEEEEEEEEC-CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence            478999999995 456899999999999999999999999999999999999998     999988653           


Q ss_pred             --eeEEEEeccccCCCCCCCcHHHHHHH--hCCC-C----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHHH
Q 024529          119 --VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG-V----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAFA  186 (266)
Q Consensus       119 --~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~-~----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv~lA  186 (266)
                        ..++|++|++..  .. .+..+++..  .... .    ..+.+.++++.+++..   ...++++.+||||||||++||
T Consensus        80 ~~~~i~~v~q~~~~--~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~la  156 (247)
T TIGR00972        80 LRRRVGMVFQKPNP--FP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIA  156 (247)
T ss_pred             HHhheEEEecCccc--CC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHH
Confidence              248999998632  22 344444321  1111 1    1345778899999962   345678899999999999999


Q ss_pred             HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          187 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       187 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      |||+.+|++|||||||++||+.++..+.+.|.+.  +.|||+||||++++..+||++++|++|+++ ..|+.+++.
T Consensus       157 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~  231 (247)
T TIGR00972       157 RALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELV-EYGPTEQIF  231 (247)
T ss_pred             HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence            9999999999999999999999999998888754  369999999999999999999999999996 578877764

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=100.00  E-value=1.2e-46  Score=322.20  Aligned_cols=198  Identities=23%  Similarity=0.364  Sum_probs=165.8

Q ss_pred             EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-------eeEEEEeccc
Q 024529           56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------VRIAVFSQHH  128 (266)
Q Consensus        56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------~~i~~~~q~~  128 (266)
                      |+++|+++.|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.       ..++|++|++
T Consensus         1 l~l~~v~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~   79 (223)
T TIGR03740         1 LETKNLSKRFG-KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESP   79 (223)
T ss_pred             CEEEeEEEEEC-CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCC
Confidence            47899999995 457999999999999999999999999999999999999999999998764       2588999975


Q ss_pred             cCCCCCCCcHHHHHHH--hCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q 024529          129 VDGLDLSSNPLLYMMR--CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD  206 (266)
Q Consensus       129 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD  206 (266)
                      ..  ....+..+++..  ........++.++++.+++.+ ..++++.+|||||+||++||||++.+|++|||||||++||
T Consensus        80 ~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD  156 (223)
T TIGR03740        80 PL--YENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTN-TGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLD  156 (223)
T ss_pred             Cc--cccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcH-HHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCC
Confidence            32  222344444321  111334567888999999974 4578889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhH
Q 024529          207 LDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHD  258 (266)
Q Consensus       207 ~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~  258 (266)
                      +.++..+.+.|.+.   +.|||++|||.+++..+||++++|++|++. ..|++.+
T Consensus       157 ~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~-~~~~~~~  210 (223)
T TIGR03740       157 PIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLG-YQGKINK  210 (223)
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEE-EecChhh
Confidence            99999998888654   469999999999999999999999999996 4566543

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=7.4e-47  Score=320.70  Aligned_cols=190  Identities=33%  Similarity=0.512  Sum_probs=156.3

Q ss_pred             EEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEEEE
Q 024529           57 SFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAVF  124 (266)
Q Consensus        57 ~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~~  124 (266)
                      +++|+++.|++. +.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.           ..++|+
T Consensus         1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~   80 (211)
T cd03225           1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV   80 (211)
T ss_pred             CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence            368999999542 56899999999999999999999999999999999999999999998763           248999


Q ss_pred             eccccCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEE
Q 024529          125 SQHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILL  198 (266)
Q Consensus       125 ~q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllL  198 (266)
                      +|++...+ ...+..+++...  ....    ...++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||
T Consensus        81 ~q~~~~~~-~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~laral~~~p~llll  158 (211)
T cd03225          81 FQNPDDQF-FGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEG-LRDRSPFTLSGGQKQRVAIAGVLAMDPDILLL  158 (211)
T ss_pred             ecChhhhc-CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHh-hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            99852111 122444433211  1111    1345778899999974 45788899999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCe
Q 024529          199 DEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGK  248 (266)
Q Consensus       199 DEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~  248 (266)
                      ||||+|||+.++..+.+.|.++   +.|||++|||++++..+||++++|++|+
T Consensus       159 DEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~  211 (211)
T cd03225         159 DEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK  211 (211)
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence            9999999999999998888654   4699999999999999999999999885

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=1.9e-48  Score=317.93  Aligned_cols=205  Identities=24%  Similarity=0.384  Sum_probs=169.5

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------eeE
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI  121 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~i  121 (266)
                      ++|.++|+.|+| +++.++++|||+|++||++|++||||+||||.+.++.|+.+|++|.|.+++.            ..+
T Consensus         3 ~~L~a~~l~K~y-~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGi   81 (243)
T COG1137           3 STLVAENLAKSY-KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGI   81 (243)
T ss_pred             cEEEehhhhHhh-CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCc
Confidence            468999999999 4567899999999999999999999999999999999999999999998763            369


Q ss_pred             EEEeccccC--CCCCCCcHHHHHHHhCCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 024529          122 AVFSQHHVD--GLDLSSNPLLYMMRCFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI  195 (266)
Q Consensus       122 ~~~~q~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~l  195 (266)
                      ||+||++.-  .+++..|....+.....+    ....++.++|+.|.+. +..+++..+||||||+|+.|||||+.+|++
T Consensus        82 gYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~-hlr~~~a~sLSGGERRR~EIARaLa~~P~f  160 (243)
T COG1137          82 GYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHIT-HLRDSKAYSLSGGERRRVEIARALAANPKF  160 (243)
T ss_pred             ccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchH-HHhcCcccccccchHHHHHHHHHHhcCCCE
Confidence            999999732  222222222211111111    1223466899999997 577899999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHH---HHHHHhhcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          196 ILLDEPSNHLDLDAVEA---LIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       196 llLDEPt~~LD~~~~~~---l~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      +||||||+|+||.+...   ++..|+..+..|+++.|+..+...+|||.+++.+|++. ++|+++++.+
T Consensus       161 iLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vl-a~G~p~ei~~  228 (243)
T COG1137         161 ILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVL-AEGSPEEIVN  228 (243)
T ss_pred             EEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEE-ecCCHHHHhc
Confidence            99999999999987655   45566677789999999999999999999999999997 7999998753

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.3e-46  Score=332.36  Aligned_cols=204  Identities=24%  Similarity=0.295  Sum_probs=165.2

Q ss_pred             CcEEEEeeEEEcCCCC----cceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------
Q 024529           54 PIISFSDASFGYPGGP----ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------  118 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~----~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------  118 (266)
                      ..|+++|+++.|++..    .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.           
T Consensus         5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~   84 (289)
T PRK13645          5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE   84 (289)
T ss_pred             ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence            3589999999996432    4899999999999999999999999999999999999999999987652           


Q ss_pred             -----eeEEEEeccccCCCCCCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHH
Q 024529          119 -----VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAK  187 (266)
Q Consensus       119 -----~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAr  187 (266)
                           ..++|++|++...+. ..+..+++..  ......    .+.+.++++.+++.....++++.+||||||||++|||
T Consensus        85 ~~~~~~~i~~v~q~~~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lar  163 (289)
T PRK13645         85 VKRLRKEIGLVFQFPEYQLF-QETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAG  163 (289)
T ss_pred             HHHHhccEEEEEeCcchhhh-hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHH
Confidence                 148999998531111 1233333321  111111    2346678899999544567889999999999999999


Q ss_pred             HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529          188 ITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  259 (266)
Q Consensus       188 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  259 (266)
                      ||+.+|++|||||||++||+.++..+.+.|.+.    +.|||+||||++++..+||++++|++|+++ ..|+.+++
T Consensus       164 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~  238 (289)
T PRK13645        164 IIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVI-SIGSPFEI  238 (289)
T ss_pred             HHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence            999999999999999999999999988877543    569999999999999999999999999996 56777665

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.7e-46  Score=329.71  Aligned_cols=203  Identities=32%  Similarity=0.485  Sum_probs=168.5

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-------------eeE
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------VRI  121 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------~~i  121 (266)
                      +|+++|++++|++...+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++.             ..+
T Consensus         1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i   80 (275)
T PRK13639          1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV   80 (275)
T ss_pred             CEEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence            5889999999964456899999999999999999999999999999999999999999988763             238


Q ss_pred             EEEeccccCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 024529          122 AVFSQHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI  195 (266)
Q Consensus       122 ~~~~q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~l  195 (266)
                      +|++|++...+ +..+..+++...  ....    ..+++.++++.+++.+ ..++++.+|||||+||++|||||+.+|++
T Consensus        81 ~~v~q~~~~~~-~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LS~Gq~qrv~laral~~~p~l  158 (275)
T PRK13639         81 GIVFQNPDDQL-FAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEG-FENKPPHHLSGGQKKRVAIAGILAMKPEI  158 (275)
T ss_pred             EEEeeChhhhh-ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch-hhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence            99999852111 122444443211  1111    1245778899999974 56788999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          196 ILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       196 llLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      |||||||++||+.++..+.+.+.+.   +.|||++|||++++..+||++++|++|+++ ..|+++++.
T Consensus       159 lllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~  225 (275)
T PRK13639        159 IVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKII-KEGTPKEVF  225 (275)
T ss_pred             EEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EeCCHHHHh
Confidence            9999999999999999998888654   569999999999999999999999999997 578888764

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3e-46  Score=343.33  Aligned_cols=200  Identities=24%  Similarity=0.275  Sum_probs=161.2

Q ss_pred             EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------------ee
Q 024529           56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------VR  120 (266)
Q Consensus        56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------------~~  120 (266)
                      ++..++.+.| +...+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|++++.               ..
T Consensus        29 ~~~~~~~~~~-~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~  107 (400)
T PRK10070         29 LSKEQILEKT-GLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKK  107 (400)
T ss_pred             ccHHHHHhhc-CCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCC
Confidence            3334444444 2234799999999999999999999999999999999999999999998763               25


Q ss_pred             EEEEeccccCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 024529          121 IAVFSQHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH  194 (266)
Q Consensus       121 i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~  194 (266)
                      ++|++|++..  ....+..+++...  ....    ..+++.++++.+++.+ ..++++.+||||||||++|||||+.+|+
T Consensus       108 igyv~Q~~~l--~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~-~~~~~~~~LSgGq~QRv~LArAL~~~P~  184 (400)
T PRK10070        108 IAMVFQSFAL--MPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLEN-YAHSYPDELSGGMRQRVGLARALAINPD  184 (400)
T ss_pred             EEEEECCCcC--CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh-hhhcCcccCCHHHHHHHHHHHHHhcCCC
Confidence            9999998632  2233444443211  1111    2346778999999974 5678899999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          195 IILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       195 lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      +|||||||++||+.++..+.+.|.+.    +.|||+||||++++..+||++++|++|+++ ..|+++++.
T Consensus       185 iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~-~~g~~~~l~  253 (400)
T PRK10070        185 ILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVV-QVGTPDEIL  253 (400)
T ss_pred             EEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEE-ecCCHHHHH
Confidence            99999999999999999988877643    569999999999999999999999999996 568777664

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=100.00  E-value=2.5e-46  Score=337.41  Aligned_cols=208  Identities=20%  Similarity=0.307  Sum_probs=169.0

Q ss_pred             CCCcEEEEeeEEEcCC---CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCC---ceEEEEcCe-------
Q 024529           52 GPPIISFSDASFGYPG---GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS---SGTVFRSAK-------  118 (266)
Q Consensus        52 ~~~~l~~~~l~~~y~~---~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~~~-------  118 (266)
                      ..++|+++|+++.|+.   ...+++||||+|++||+++|+|+||||||||+++|+|+++|+   +|+|.+++.       
T Consensus         9 ~~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~   88 (330)
T PRK09473          9 ADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPE   88 (330)
T ss_pred             CCceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCH
Confidence            3568999999999952   246899999999999999999999999999999999999996   999998774       


Q ss_pred             --------eeEEEEeccccCCCCCCCcHHHHHH---HhCCCCc----HHHHHHHHHhcCCCcc--cccCCCCCCChHHHH
Q 024529          119 --------VRIAVFSQHHVDGLDLSSNPLLYMM---RCFPGVP----EQKLRAHLGSFGVTGN--LALQPMYTLSGGQKS  181 (266)
Q Consensus       119 --------~~i~~~~q~~~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~~l~~~~l~~~--~~~~~~~~LSgGqkq  181 (266)
                              ..++|++|++...++...+...++.   .......    .+++.++++.+++.+.  ..++++++|||||+|
T Consensus        89 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~Q  168 (330)
T PRK09473         89 KELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQ  168 (330)
T ss_pred             HHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHH
Confidence                    1599999997433333333333221   1111122    3467788999999642  235788999999999


Q ss_pred             HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChh
Q 024529          182 RVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFH  257 (266)
Q Consensus       182 Rv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~  257 (266)
                      ||+|||||+.+|++||+||||++||+.++..+++.|.+.    +.|+|+||||++.+..+||++++|.+|+++ ..|+.+
T Consensus       169 Rv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~iv-e~g~~~  247 (330)
T PRK09473        169 RVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTM-EYGNAR  247 (330)
T ss_pred             HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EECCHH
Confidence            999999999999999999999999999999888876543    679999999999999999999999999997 568777


Q ss_pred             HHH
Q 024529          258 DYK  260 (266)
Q Consensus       258 ~~~  260 (266)
                      ++.
T Consensus       248 ~i~  250 (330)
T PRK09473        248 DVF  250 (330)
T ss_pred             HHH
Confidence            664

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.3e-46  Score=330.05  Aligned_cols=203  Identities=27%  Similarity=0.364  Sum_probs=169.2

Q ss_pred             CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeE
Q 024529           53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI  121 (266)
Q Consensus        53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i  121 (266)
                      ..+|+++|++++|+ ++.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++.           ..+
T Consensus         5 ~~~l~i~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i   83 (265)
T PRK10253          5 VARLRGEQLTLGYG-KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI   83 (265)
T ss_pred             ccEEEEEEEEEEEC-CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence            45799999999995 456999999999999999999999999999999999999999999998764           248


Q ss_pred             EEEeccccCCCCCCCcHHHHHHHh-CC---------CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHcc
Q 024529          122 AVFSQHHVDGLDLSSNPLLYMMRC-FP---------GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK  191 (266)
Q Consensus       122 ~~~~q~~~~~~~~~~~~~~~~~~~-~~---------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~  191 (266)
                      +|++|++...  ...+..+++... ..         ......+.++++.+++.+ ..++++.+|||||+||++|||||+.
T Consensus        84 ~~v~q~~~~~--~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~Gq~qrv~laral~~  160 (265)
T PRK10253         84 GLLAQNATTP--GDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITH-LADQSVDTLSGGQRQRAWIAMVLAQ  160 (265)
T ss_pred             EEeeccCcCC--CCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHH-HhcCCcccCChHHHHHHHHHHHHhc
Confidence            9999986322  223444443221 00         012345778899999974 5678899999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          192 KPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      +|++|||||||+|||+.++..+.+.|.+.    +.|||++|||++++..+||++++|++|+++ ..|+.+++.
T Consensus       161 ~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~  232 (265)
T PRK10253        161 ETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIV-AQGAPKEIV  232 (265)
T ss_pred             CCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHh
Confidence            99999999999999999999988877653    569999999999999999999999999996 578877654

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3e-46  Score=325.48  Aligned_cols=203  Identities=20%  Similarity=0.283  Sum_probs=166.4

Q ss_pred             CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC-----CCceEEEEcCe---------
Q 024529           53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK---------  118 (266)
Q Consensus        53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~---------  118 (266)
                      +|+|+++|++++|+ ++.+|+++||+|++|++++|+||||||||||+++|+|++.     |++|+|.+++.         
T Consensus         4 ~~~l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~   82 (253)
T PRK14242          4 PPKMEARGLSFFYG-DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV   82 (253)
T ss_pred             CcEEEEeeeEEEEC-CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence            56899999999995 4569999999999999999999999999999999999964     68999988762         


Q ss_pred             ----eeEEEEeccccCCCCCCCcHHHHHHHh--CCC-----CcHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHH
Q 024529          119 ----VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPG-----VPEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVA  184 (266)
Q Consensus       119 ----~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv~  184 (266)
                          ..++|++|++.. +.  .+..+++...  ...     ...+++.++++.+++.+   ...++++.+|||||||||+
T Consensus        83 ~~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~  159 (253)
T PRK14242         83 VELRRRVGMVFQKPNP-FP--KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLC  159 (253)
T ss_pred             HHHhhcEEEEecCCCC-Cc--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHH
Confidence                248999998632 22  2444443211  111     12345777888888853   2346788999999999999


Q ss_pred             HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          185 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       185 lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      |||||+.+|++|||||||++||+.++..+.+.|++.  +.|||+||||++++..+||++++|++|+++ ..|+.+++.
T Consensus       160 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~  236 (253)
T PRK14242        160 IARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLI-EVGPTEQIF  236 (253)
T ss_pred             HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence            999999999999999999999999999998888764  469999999999999999999999999996 567777663

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.4e-46  Score=329.92  Aligned_cols=202  Identities=24%  Similarity=0.360  Sum_probs=165.9

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------eeEE
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRIA  122 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~i~  122 (266)
                      ||+++|++++|+++..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++++.            ..++
T Consensus         1 ml~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~   80 (274)
T PRK13644          1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG   80 (274)
T ss_pred             CEEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence            5889999999964456999999999999999999999999999999999999999999988763            2489


Q ss_pred             EEeccccCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 024529          123 VFSQHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII  196 (266)
Q Consensus       123 ~~~q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll  196 (266)
                      |++|++...+ ...+..+++...  ....    ..+++.++++.+++.. ..++++..|||||+||++|||||+.+|+||
T Consensus        81 ~v~q~~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrv~laral~~~p~ll  158 (274)
T PRK13644         81 IVFQNPETQF-VGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEK-YRHRSPKTLSGGQGQCVALAGILTMEPECL  158 (274)
T ss_pred             EEEEChhhhc-ccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHH-HhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence            9999863211 123444443211  1111    1345778899999964 567889999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          197 LLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       197 lLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      ||||||++||+.++..+.+.+++.   +.|||++|||++++. .||++++|++|+++ +.|+.+++.
T Consensus       159 lLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~~  223 (274)
T PRK13644        159 IFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELH-DADRIIVMDRGKIV-LEGEPENVL  223 (274)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHh-hCCEEEEEECCEEE-EECCHHHHh
Confidence            999999999999999988887643   569999999999995 69999999999996 678877653

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.9e-46  Score=330.23  Aligned_cols=203  Identities=25%  Similarity=0.375  Sum_probs=167.4

Q ss_pred             CcEEEEeeEEEcCCC--CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------ee
Q 024529           54 PIISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR  120 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~  120 (266)
                      ++|+++|+++.|++.  ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.           ..
T Consensus         3 ~~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~   82 (279)
T PRK13650          3 NIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHK   82 (279)
T ss_pred             ceEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhh
Confidence            379999999999632  45899999999999999999999999999999999999999999998774           25


Q ss_pred             EEEEeccccCCCCCCCcHHHHHHHh--CCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 024529          121 IAVFSQHHVDGLDLSSNPLLYMMRC--FPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH  194 (266)
Q Consensus       121 i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~  194 (266)
                      ++|++|++... ....+..+++...  ..+..    .+++.++++.+++.+ ..++++.+|||||+||++|||||+.+|+
T Consensus        83 i~~v~q~~~~~-~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~LSgGq~qrv~lAral~~~p~  160 (279)
T PRK13650         83 IGMVFQNPDNQ-FVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQD-FKEREPARLSGGQKQRVAIAGAVAMRPK  160 (279)
T ss_pred             ceEEEcChHHh-cccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHh-HhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence            89999986211 1223444443211  11111    345788999999974 5678899999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          195 IILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       195 lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      +|||||||++||+.++..+++.+.+.    +.|||+||||++++. .||++++|++|+++ ..|+.+++.
T Consensus       161 lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~-~~dri~~l~~G~i~-~~g~~~~~~  228 (279)
T PRK13650        161 IIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKNGQVE-STSTPRELF  228 (279)
T ss_pred             EEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEE-EECCHHHHH
Confidence            99999999999999999988877643    579999999999995 79999999999996 578877754

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=100.00  E-value=2.4e-46  Score=327.80  Aligned_cols=201  Identities=21%  Similarity=0.300  Sum_probs=167.9

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCC---ceEEEEcCee-----------
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS---SGTVFRSAKV-----------  119 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~~~~-----------  119 (266)
                      ++|+++||++.|+ +..+|+++||+|.+||+++|+||||||||||+++|+|+++|+   +|+|.+++..           
T Consensus         3 ~~l~~~nl~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~   81 (262)
T PRK09984          3 TIIRVEKLAKTFN-QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI   81 (262)
T ss_pred             cEEEEeeEEEEeC-CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence            5799999999995 457899999999999999999999999999999999999986   4999877631           


Q ss_pred             -----eEEEEeccccCCCCCCCcHHHHHHHhC--------------CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHH
Q 024529          120 -----RIAVFSQHHVDGLDLSSNPLLYMMRCF--------------PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQK  180 (266)
Q Consensus       120 -----~i~~~~q~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqk  180 (266)
                           .++|++|++..  ....+..+++....              .....+++.++++.+++.. ..++++.+||||||
T Consensus        82 ~~~~~~i~~~~q~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~  158 (262)
T PRK09984         82 RKSRANTGYIFQQFNL--VNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVH-FAHQRVSTLSGGQQ  158 (262)
T ss_pred             HHHHhheEEEcccccc--ccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHH-HHhCCccccCHHHH
Confidence                 37999998532  22234444442110              0112346788999999964 56788999999999


Q ss_pred             HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCCh
Q 024529          181 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTF  256 (266)
Q Consensus       181 qRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~  256 (266)
                      ||++|||||+.+|++|||||||++||+.++..+.+.|.+.    +.|||++|||++++..+||++++|++|++. +.|++
T Consensus       159 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~-~~g~~  237 (262)
T PRK09984        159 QRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVF-YDGSS  237 (262)
T ss_pred             HHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCH
Confidence            9999999999999999999999999999999998888653    569999999999999999999999999996 67888


Q ss_pred             hHH
Q 024529          257 HDY  259 (266)
Q Consensus       257 ~~~  259 (266)
                      +++
T Consensus       238 ~~~  240 (262)
T PRK09984        238 QQF  240 (262)
T ss_pred             HHh
Confidence            877

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=100.00  E-value=1e-46  Score=320.15  Aligned_cols=190  Identities=22%  Similarity=0.341  Sum_probs=158.3

Q ss_pred             EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-------------eeEE
Q 024529           56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------VRIA  122 (266)
Q Consensus        56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------~~i~  122 (266)
                      |+++|+++.|++ ..+|+++||++++|++++|+||||||||||+++|+|+++|++|+|.+++.             ..++
T Consensus         1 l~~~~l~~~~~~-~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~   79 (213)
T cd03262           1 IEIKNLHKSFGD-FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVG   79 (213)
T ss_pred             CEEEEEEEEECC-eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcce
Confidence            478999999954 57999999999999999999999999999999999999999999998763             2489


Q ss_pred             EEeccccCCCCCCCcHHHHHHHh---CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 024529          123 VFSQHHVDGLDLSSNPLLYMMRC---FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI  195 (266)
Q Consensus       123 ~~~q~~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~l  195 (266)
                      |++|++..  ....+..+++...   ....    ..+++.++++.+++.. ..++++.+|||||+||++|||||+.+|++
T Consensus        80 ~~~q~~~~--~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~~p~l  156 (213)
T cd03262          80 MVFQQFNL--FPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLAD-KADAYPAQLSGGQQQRVAIARALAMNPKV  156 (213)
T ss_pred             EEeccccc--CCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHh-HhhhCccccCHHHHHHHHHHHHHhcCCCE
Confidence            99998632  2223444433211   1111    2345678899999974 46788999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeE
Q 024529          196 ILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKA  249 (266)
Q Consensus       196 llLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i  249 (266)
                      |||||||+|||+.++..+.+.|.+.   +.|||++|||++++..+||++++|++|++
T Consensus       157 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i  213 (213)
T cd03262         157 MLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI  213 (213)
T ss_pred             EEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            9999999999999999988888753   56999999999999999999999999874

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=100.00  E-value=6.5e-46  Score=323.74  Aligned_cols=204  Identities=21%  Similarity=0.293  Sum_probs=166.9

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC----CceEEEEcCe---------ee
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP----SSGTVFRSAK---------VR  120 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p----~~G~i~~~~~---------~~  120 (266)
                      .+|+++|++++| + ..+|+|+||+|++||+++|+||||||||||+++|+|+++|    ++|+|.+++.         ..
T Consensus         3 ~~l~~~~l~~~~-~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~   80 (254)
T PRK10418          3 QQIELRNIALQA-A-QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRK   80 (254)
T ss_pred             cEEEEeCeEEEe-c-cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccce
Confidence            369999999999 4 4689999999999999999999999999999999999999    9999998763         25


Q ss_pred             EEEEeccccCCCCCCCcHHHHHH---HhC-CCCcHHHHHHHHHhcCCCcc--cccCCCCCCChHHHHHHHHHHHHccCCC
Q 024529          121 IAVFSQHHVDGLDLSSNPLLYMM---RCF-PGVPEQKLRAHLGSFGVTGN--LALQPMYTLSGGQKSRVAFAKITFKKPH  194 (266)
Q Consensus       121 i~~~~q~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~l~~~~l~~~--~~~~~~~~LSgGqkqRv~lAral~~~p~  194 (266)
                      ++|++|++...+....+......   ... .....+++.++++.+++.+.  ..++++.+|||||+||++|||||+.+|+
T Consensus        81 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~  160 (254)
T PRK10418         81 IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAP  160 (254)
T ss_pred             EEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCC
Confidence            89999986311221222222211   111 12234568889999999642  3467889999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          195 IILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       195 lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      +|||||||++||+.++..+.+.|.+.    +.|||++||+++++..+||++++|++|+++ ..|+.+++.
T Consensus       161 lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~~  229 (254)
T PRK10418        161 FIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIV-EQGDVETLF  229 (254)
T ss_pred             EEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEE-EecCHHHHh
Confidence            99999999999999998888877643    569999999999999999999999999996 678877764

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=100.00  E-value=2.2e-46  Score=326.25  Aligned_cols=200  Identities=24%  Similarity=0.352  Sum_probs=165.5

Q ss_pred             EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------------
Q 024529           56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------------  118 (266)
Q Consensus        56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------------  118 (266)
                      |+++||++.|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.                 
T Consensus         1 i~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~   79 (252)
T TIGR03005         1 VRFSDVTKRFG-ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADE   79 (252)
T ss_pred             CEEEEEEEEeC-CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccch
Confidence            47899999995 457999999999999999999999999999999999999999999987653                 


Q ss_pred             -------eeEEEEeccccCCCCCCCcHHHHHHHh---CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHH
Q 024529          119 -------VRIAVFSQHHVDGLDLSSNPLLYMMRC---FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVA  184 (266)
Q Consensus       119 -------~~i~~~~q~~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~  184 (266)
                             ..++|++|++.  +....+..+++...   ....    ..+.+.++++.+++.+ ..++.+.+|||||+||++
T Consensus        80 ~~~~~~~~~i~~v~q~~~--~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrv~  156 (252)
T TIGR03005        80 KHLRQMRNKIGMVFQSFN--LFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLAD-KADHMPAQLSGGQQQRVA  156 (252)
T ss_pred             hHHHHHhhCeEEEecCcc--cCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-HhhcChhhcCHHHHHHHH
Confidence                   24889999753  22223444443211   0111    2345778899999974 567788999999999999


Q ss_pred             HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          185 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       185 lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      |||||+.+|++|||||||++||+.++..+.+.|.+.    +.|||++|||++++..+||++++|++|+++ ..|+.+++.
T Consensus       157 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~  235 (252)
T TIGR03005       157 IARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV-EQGKPDEIF  235 (252)
T ss_pred             HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHHh
Confidence            999999999999999999999999999888877643    569999999999999999999999999996 568877764

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.3e-46  Score=324.68  Aligned_cols=203  Identities=20%  Similarity=0.256  Sum_probs=166.7

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC-----CceEEEEcCe----------
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK----------  118 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~----------  118 (266)
                      ++|+++|++++|+ +..+|+|+||+|++|++++|+||||||||||+++|+|+++|     ++|+|.+++.          
T Consensus         2 ~~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~   80 (250)
T PRK14247          2 NKIEIRDLKVSFG-QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIEL   80 (250)
T ss_pred             ceEEEEeeEEEEC-CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHH
Confidence            3699999999995 45699999999999999999999999999999999999874     7999988764          


Q ss_pred             -eeEEEEeccccCCCCCCCcHHHHHHH--hCCC------CcHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHHH
Q 024529          119 -VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG------VPEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAFA  186 (266)
Q Consensus       119 -~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~------~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv~lA  186 (266)
                       ..++|++|++..  ....+..+++..  ....      ...+.+.++++.+++.+   ...++++.+|||||+||++||
T Consensus        81 ~~~i~~v~q~~~~--~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~la  158 (250)
T PRK14247         81 RRRVQMVFQIPNP--IPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIA  158 (250)
T ss_pred             hccEEEEeccCcc--CCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHH
Confidence             358999998632  223344444321  1111      11345678899999853   235678899999999999999


Q ss_pred             HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          187 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       187 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      |||+.+|++|||||||++||+.++..+.+.|.+.  +.|||++|||++++..+||++++|++|++. ..|+.+++.
T Consensus       159 ral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~  233 (250)
T PRK14247        159 RALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIV-EWGPTREVF  233 (250)
T ss_pred             HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEE-EECCHHHHH
Confidence            9999999999999999999999999998888764  469999999999999999999999999996 578877663

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=100.00  E-value=1.7e-46  Score=330.07  Aligned_cols=199  Identities=22%  Similarity=0.275  Sum_probs=164.8

Q ss_pred             EEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------------eeE
Q 024529           57 SFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------VRI  121 (266)
Q Consensus        57 ~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------------~~i  121 (266)
                      .++|+++.|+ +..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.               ..+
T Consensus        26 ~~~~~~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i  104 (269)
T cd03294          26 SKEEILKKTG-QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKI  104 (269)
T ss_pred             hhhhhhhhcC-CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcE
Confidence            5779999994 567899999999999999999999999999999999999999999988663               248


Q ss_pred             EEEeccccCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 024529          122 AVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI  195 (266)
Q Consensus       122 ~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~l  195 (266)
                      +|++|++..  ....+..+++..  .....    ..+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++
T Consensus       105 ~~v~q~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~Gq~qrv~lAral~~~p~i  181 (269)
T cd03294         105 SMVFQSFAL--LPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEG-WEHKYPDELSGGMQQRVGLARALAVDPDI  181 (269)
T ss_pred             EEEecCccc--CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHh-HhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence            999998632  222344444321  11111    2345778899999974 46788899999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          196 ILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       196 llLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      |||||||+|||+.++..+.+.+.++    +.|||++|||++++..+||++++|++|+++ ..|+.+++.
T Consensus       182 llLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~  249 (269)
T cd03294         182 LLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLV-QVGTPEEIL  249 (269)
T ss_pred             EEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHHH
Confidence            9999999999999999998877653    579999999999999999999999999996 567777664

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.6e-46  Score=328.49  Aligned_cols=202  Identities=23%  Similarity=0.280  Sum_probs=163.9

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe--------eeEEEEec
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------VRIAVFSQ  126 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------~~i~~~~q  126 (266)
                      +|+++|++++|++++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.        ..++|++|
T Consensus         6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q   85 (272)
T PRK15056          6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQ   85 (272)
T ss_pred             eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEecc
Confidence            6999999999964467999999999999999999999999999999999999999999998874        25999999


Q ss_pred             cccCCCCCCCcHHHHHH----H---hC--C-CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 024529          127 HHVDGLDLSSNPLLYMM----R---CF--P-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII  196 (266)
Q Consensus       127 ~~~~~~~~~~~~~~~~~----~---~~--~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll  196 (266)
                      ++.............+.    .   ..  . ....+.+.++++.+++.+ ..++++.+|||||+||++|||||+.+|++|
T Consensus        86 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgG~~qrv~laraL~~~p~ll  164 (272)
T PRK15056         86 SEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVE-FRHRQIGELSGGQKKRVFLARAIAQQGQVI  164 (272)
T ss_pred             ccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChh-HhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence            86321111111111110    0   00  0 112345677899999974 457889999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529          197 LLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  259 (266)
Q Consensus       197 lLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  259 (266)
                      ||||||++||+.++..+.+.|.+.   +.|||+||||++++..+||+++++ +|+++ ..|+.+++
T Consensus       165 llDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~-~~g~~~~~  228 (272)
T PRK15056        165 LLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVL-ASGPTETT  228 (272)
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEE-eecCHHhc
Confidence            999999999999999998888654   569999999999999999999877 89986 56777664

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=100.00  E-value=8.8e-46  Score=363.54  Aligned_cols=201  Identities=25%  Similarity=0.446  Sum_probs=174.2

Q ss_pred             cEEEEeeEEEcCC-CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEE
Q 024529           55 IISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA  122 (266)
Q Consensus        55 ~l~~~~l~~~y~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~  122 (266)
                      .++++||+|+|++ ++++|+|+||+|++||++||+|+||||||||+|+|+|+++|++|+|.+++.           ..++
T Consensus       451 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~  530 (686)
T TIGR03797       451 AIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLG  530 (686)
T ss_pred             eEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccE
Confidence            5999999999963 457999999999999999999999999999999999999999999999874           3699


Q ss_pred             EEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc----------CCCCCCChHHHHHHHHHHHHccC
Q 024529          123 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKITFKK  192 (266)
Q Consensus       123 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqRv~lAral~~~  192 (266)
                      |++|++..   +..+..+++....+ .+++++.++++..++.+....          .....||||||||++|||||+++
T Consensus       531 ~v~Q~~~l---f~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~  606 (686)
T TIGR03797       531 VVLQNGRL---MSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRK  606 (686)
T ss_pred             EEccCCcc---CcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcC
Confidence            99999752   34566777654433 677889999999888654322          22467999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          193 PHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       193 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      |++||||||||+||+.+.+.+.+.+.+.+.|+|+|||+++.+.. ||+|++|++|+++ ..|+.+++.+
T Consensus       607 p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~~-~D~Iivl~~G~iv-~~G~~~~Ll~  673 (686)
T TIGR03797       607 PRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRN-ADRIYVLDAGRVV-QQGTYDELMA  673 (686)
T ss_pred             CCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHHc-CCEEEEEECCEEE-EECCHHHHHh
Confidence            99999999999999999999999999888899999999999875 9999999999997 5798887643

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5e-46  Score=320.25  Aligned_cols=200  Identities=28%  Similarity=0.413  Sum_probs=166.1

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------eeEEEEe
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS  125 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~i~~~~  125 (266)
                      ||+++||+++|++ .  ..++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++.         ..++|++
T Consensus         1 ~l~~~~l~~~~~~-~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~   77 (232)
T PRK10771          1 MLKLTDITWLYHH-L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLF   77 (232)
T ss_pred             CeEEEEEEEEECC-c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEe
Confidence            4889999999953 3  24999999999999999999999999999999999999999998764         2589999


Q ss_pred             ccccCCCCCCCcHHHHHHHhC-CC-----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 024529          126 QHHVDGLDLSSNPLLYMMRCF-PG-----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD  199 (266)
Q Consensus       126 q~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLD  199 (266)
                      |++.  +....+..+++.... ..     ...+++.++++.+++.+ ..++++.+|||||+||++||||++.+|++||||
T Consensus        78 q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~lllLD  154 (232)
T PRK10771         78 QENN--LFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIED-LLARLPGQLSGGQRQRVALARCLVREQPILLLD  154 (232)
T ss_pred             cccc--cccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHH-HHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            9863  222234444442211 11     12456788999999964 567889999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          200 EPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       200 EPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      |||++||+.++..+.+.|.+.    +.|||++|||++++..+||++++|++|++. +.|+.+++.+
T Consensus       155 EP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~-~~g~~~~~~~  219 (232)
T PRK10771        155 EPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIA-WDGPTDELLS  219 (232)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EeCCHHHHHh
Confidence            999999999999888877643    569999999999999999999999999996 6788877753

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=100.00  E-value=3.4e-46  Score=325.82  Aligned_cols=200  Identities=27%  Similarity=0.384  Sum_probs=167.3

Q ss_pred             EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEEEE
Q 024529           56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAVF  124 (266)
Q Consensus        56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~~  124 (266)
                      |+++|+++.|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.           ..++|+
T Consensus         2 l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~   80 (256)
T TIGR03873         2 LRLSRVSWSAG-GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALV   80 (256)
T ss_pred             ceEEeEEEEEC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEe
Confidence            68999999995 457999999999999999999999999999999999999999999998773           248999


Q ss_pred             eccccCCCCCCCcHHHHHHHh-------CC---CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 024529          125 SQHHVDGLDLSSNPLLYMMRC-------FP---GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH  194 (266)
Q Consensus       125 ~q~~~~~~~~~~~~~~~~~~~-------~~---~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~  194 (266)
                      +|++.  +....+..+++...       ..   ....+++.++++.+++. ...++++.+|||||+||++|||||+.+|+
T Consensus        81 ~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~  157 (256)
T TIGR03873        81 EQDSD--TAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELS-HLADRDMSTLSGGERQRVHVARALAQEPK  157 (256)
T ss_pred             cccCc--cCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcH-hhhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence            99863  22233444444221       00   01234677889999996 45678899999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          195 IILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       195 lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      +|||||||++||+.++..+.+.|.+.   +.|||++|||++++..+||++++|++|+++ ..|+.+++.
T Consensus       158 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~  225 (256)
T TIGR03873       158 LLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVV-AAGPPREVL  225 (256)
T ss_pred             EEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEE-EecCHHHhh
Confidence            99999999999999999988887654   569999999999999999999999999996 678877763

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=100.00  E-value=2.8e-46  Score=355.59  Aligned_cols=203  Identities=25%  Similarity=0.365  Sum_probs=171.7

Q ss_pred             CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------ee
Q 024529           53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VR  120 (266)
Q Consensus        53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~  120 (266)
                      .++|+++|+++.|+ ++.+|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++.            ..
T Consensus         9 ~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~   87 (510)
T PRK15439          9 PPLLCARSISKQYS-GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG   87 (510)
T ss_pred             CceEEEEeEEEEeC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence            45899999999995 457999999999999999999999999999999999999999999998763            24


Q ss_pred             EEEEeccccCCCCCCCcHHHHHHHhCC--CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEE
Q 024529          121 IAVFSQHHVDGLDLSSNPLLYMMRCFP--GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILL  198 (266)
Q Consensus       121 i~~~~q~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllL  198 (266)
                      ++|++|++.  +....+..+++.....  ....+++.++++.+++.. ..++++.+|||||||||+|||||+.+|++|||
T Consensus        88 i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~la~aL~~~p~lllL  164 (510)
T PRK15439         88 IYLVPQEPL--LFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQL-DLDSSAGSLEVADRQIVEILRGLMRDSRILIL  164 (510)
T ss_pred             EEEEeccCc--cCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCc-cccCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            899999863  2223345554432111  112456788999999974 46788999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          199 DEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       199 DEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      ||||+|||+.++.++.+.|++.   +.|||+||||++++..+||++++|++|+++ +.|+++++.
T Consensus       165 DEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~  228 (510)
T PRK15439        165 DEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIA-LSGKTADLS  228 (510)
T ss_pred             ECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EecChHHcC
Confidence            9999999999999998887653   579999999999999999999999999996 678887763

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=100.00  E-value=2.6e-46  Score=340.11  Aligned_cols=192  Identities=21%  Similarity=0.276  Sum_probs=160.7

Q ss_pred             EcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------------eeEEEEeccc
Q 024529           64 GYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------VRIAVFSQHH  128 (266)
Q Consensus        64 ~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------------~~i~~~~q~~  128 (266)
                      .| +++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.               ..++|++|++
T Consensus         2 ~~-~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~   80 (363)
T TIGR01186         2 KT-GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF   80 (363)
T ss_pred             cc-CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence            46 4566899999999999999999999999999999999999999999998773               3599999986


Q ss_pred             cCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCC
Q 024529          129 VDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS  202 (266)
Q Consensus       129 ~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt  202 (266)
                      ..  ....++.+++..  ...+.    ..+++.++++.+++.. ..++++.+|||||||||+|||||+.+|++|||||||
T Consensus        81 ~l--~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~-~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~  157 (363)
T TIGR01186        81 AL--FPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEE-YEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAF  157 (363)
T ss_pred             cC--CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCch-hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence            42  223344444321  11111    2356788999999964 567899999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          203 NHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       203 ~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      ++||+.++..+.+.+.+.    +.|||+||||++++..+||+|++|++|+++ ..|+++++.
T Consensus       158 saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv-~~g~~~ei~  218 (363)
T TIGR01186       158 SALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIV-QVGTPDEIL  218 (363)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEE-eeCCHHHHH
Confidence            999999999988877543    579999999999999999999999999997 578877764

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.4e-46  Score=323.15  Aligned_cols=202  Identities=19%  Similarity=0.284  Sum_probs=165.3

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------eeE
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI  121 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~i  121 (266)
                      ++|+++|+++.|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.            ..+
T Consensus         4 ~~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i   82 (237)
T PRK11614          4 VMLSFDKVSAHYG-KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV   82 (237)
T ss_pred             cEEEEEeEEEeeC-CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCE
Confidence            4799999999995 457999999999999999999999999999999999999999999988763            248


Q ss_pred             EEEeccccCCCCCCCcHHHHHHHh--CCC--CcHHHHHHHHHhc-CCCcccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 024529          122 AVFSQHHVDGLDLSSNPLLYMMRC--FPG--VPEQKLRAHLGSF-GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII  196 (266)
Q Consensus       122 ~~~~q~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~l~~~-~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll  196 (266)
                      +|++|++..  ....+..+++...  ...  ...+.+.++++.+ ++.+ ..++++.+|||||+||++|||||+.+|++|
T Consensus        83 ~~~~q~~~~--~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~~~~LS~G~~qrl~la~al~~~p~il  159 (237)
T PRK11614         83 AIVPEGRRV--FSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHE-RRIQRAGTMSGGEQQMLAIGRALMSQPRLL  159 (237)
T ss_pred             EEeccCccc--CCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHH-HHhCchhhCCHHHHHHHHHHHHHHhCCCEE
Confidence            999998532  2223444444321  111  1123456667777 4643 446788999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          197 LLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       197 lLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      ||||||++||+.++..+.+.|.+   .+.|||++|||++++..+||++++|++|+++ +.|+++++.
T Consensus       160 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~  225 (237)
T PRK11614        160 LLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVV-LEDTGDALL  225 (237)
T ss_pred             EEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEE-eeCCHHHHh
Confidence            99999999999999988887764   3579999999999999999999999999996 678887764

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=100.00  E-value=7.8e-46  Score=365.20  Aligned_cols=203  Identities=26%  Similarity=0.398  Sum_probs=174.8

Q ss_pred             CcEEEEeeEEEcCC-CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeE
Q 024529           54 PIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI  121 (266)
Q Consensus        54 ~~l~~~~l~~~y~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i  121 (266)
                      ..|+++||+|+|++ .+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.           ..+
T Consensus       476 ~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i  555 (710)
T TIGR03796       476 GYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSV  555 (710)
T ss_pred             CeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhhe
Confidence            35999999999975 357999999999999999999999999999999999999999999999874           369


Q ss_pred             EEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc----------CCCCCCChHHHHHHHHHHHHcc
Q 024529          122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKITFK  191 (266)
Q Consensus       122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqRv~lAral~~  191 (266)
                      +|++|++..   +..+..+++....+..+++++.++++..++.+....          .....||||||||++|||||++
T Consensus       556 ~~v~Q~~~l---f~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~  632 (710)
T TIGR03796       556 AMVDQDIFL---FEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVR  632 (710)
T ss_pred             eEEecCChh---hhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhh
Confidence            999999742   345666776543345677888888888887643322          2346799999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          192 KPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      +|++||||||||+||+.+...+.+.+.+.+.|+|+|||+++.+.. ||+|++|++|+++ ..|+.+++.+
T Consensus       633 ~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~-~D~Iivl~~G~i~-~~G~~~~Ll~  700 (710)
T TIGR03796       633 NPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRD-CDEIIVLERGKVV-QRGTHEELWA  700 (710)
T ss_pred             CCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEEEEEeCCEEE-EecCHHHHHH
Confidence            999999999999999999999999998878899999999999875 9999999999997 6799888754

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.4e-46  Score=338.75  Aligned_cols=199  Identities=22%  Similarity=0.282  Sum_probs=165.7

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------------e
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------V  119 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------------~  119 (266)
                      ||++ ||+++|+ +. .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.               .
T Consensus         1 ~l~~-~l~k~~~-~~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   76 (352)
T PRK11144          1 MLEL-NFKQQLG-DL-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR   76 (352)
T ss_pred             CeEE-EEEEEeC-CE-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhC
Confidence            5788 9999995 33 23 899999999999999999999999999999999999999987652               2


Q ss_pred             eEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 024529          120 RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD  199 (266)
Q Consensus       120 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLD  199 (266)
                      .++|++|++..  ....+..+++.........+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++||||
T Consensus        77 ~i~~v~q~~~l--~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGq~qRvalaraL~~~p~llLLD  153 (352)
T PRK11144         77 RIGYVFQDARL--FPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEP-LLDRYPGSLSGGEKQRVAIGRALLTAPELLLMD  153 (352)
T ss_pred             CEEEEcCCccc--CCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCch-hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence            48999998632  223345555432222233567888999999974 567889999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          200 EPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       200 EPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      |||++||+.++..+.+.|++.    +.|+|+||||++++..+||++++|++|++. ..|+++++..
T Consensus       154 EPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~-~~g~~~~i~~  218 (352)
T PRK11144        154 EPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVK-AFGPLEEVWA  218 (352)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEE-EecCHHHHHh
Confidence            999999999999888877643    569999999999999999999999999996 5688877643

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.1e-46  Score=344.27  Aligned_cols=251  Identities=25%  Similarity=0.348  Sum_probs=196.6

Q ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHhccCcccccCC-CCcccccCCCCCCCCCCcEEEEeeEEEcCCCCcceeeceEEEeC
Q 024529            3 SFIDKFRYNAKRASLVQSRIKALERMGHVDEVVND-PDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDL   81 (266)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~   81 (266)
                      ||..|+|.-+.-.+..+....+.+.+....+.+.. ++.....  ......+..++++|+++.|++++++++|+||++++
T Consensus       269 Eff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~--~~~~~~~~ei~~~~l~~~y~~g~~~l~~l~~t~~~  346 (559)
T COG4988         269 EFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKA--EVANEPPIEISLENLSFRYPDGKPALSDLNLTIKA  346 (559)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCcccc--ccccCCCceeeecceEEecCCCCcccCCceeEecC
Confidence            67888888888777776666666655444332222 1111000  01111123456679999998777899999999999


Q ss_pred             CcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEEEEeccccCCCCCCCcHHHHHHHhCCCCc
Q 024529           82 DSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVP  150 (266)
Q Consensus        82 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~  150 (266)
                      |+.++|+|+||||||||+++|+|+.+|++|+|.+++.           ..++|++|++..   +..+..+++....++.+
T Consensus       347 g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~l---f~gTireNi~l~~~~~s  423 (559)
T COG4988         347 GQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYL---FAGTIRENILLARPDAS  423 (559)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCcc---ccccHHHHhhccCCcCC
Confidence            9999999999999999999999999999999999874           359999999752   34456666655555677


Q ss_pred             HHHHHHHHHhcCCCccccc-----C----CCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc-
Q 024529          151 EQKLRAHLGSFGVTGNLAL-----Q----PMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF-  220 (266)
Q Consensus       151 ~~~~~~~l~~~~l~~~~~~-----~----~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-  220 (266)
                      ++++.++++..++.+....     .    ....|||||+|||++||||+.+++++||||||+|||.++.+.+.+.|.+. 
T Consensus       424 ~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~  503 (559)
T COG4988         424 DEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELA  503 (559)
T ss_pred             HHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHH
Confidence            8889999999888654332     1    23459999999999999999999999999999999999999999988764 


Q ss_pred             -CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          221 -QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       221 -~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                       ++|+|+|||++..+.. ||+|++|++|+++ ..|+++++.
T Consensus       504 ~~ktvl~itHrl~~~~~-~D~I~vld~G~l~-~~g~~~~L~  542 (559)
T COG4988         504 KQKTVLVITHRLEDAAD-ADRIVVLDNGRLV-EQGTHEELS  542 (559)
T ss_pred             hCCeEEEEEcChHHHhc-CCEEEEecCCcee-ccCCHHHHh
Confidence             5799999999999985 9999999999997 678888764

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=100.00  E-value=4.6e-46  Score=327.15  Aligned_cols=205  Identities=22%  Similarity=0.333  Sum_probs=166.8

Q ss_pred             CcEEEEeeEEEcCC--------CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-------
Q 024529           54 PIISFSDASFGYPG--------GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------  118 (266)
Q Consensus        54 ~~l~~~~l~~~y~~--------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------  118 (266)
                      ++|+++||++.|++        ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.       
T Consensus         2 ~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~   81 (268)
T PRK10419          2 TLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR   81 (268)
T ss_pred             ceEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccCh
Confidence            36999999999963        357999999999999999999999999999999999999999999988764       


Q ss_pred             -------eeEEEEeccccCCCCCCCcHHHHHH---HhCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHH
Q 024529          119 -------VRIAVFSQHHVDGLDLSSNPLLYMM---RCFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVA  184 (266)
Q Consensus       119 -------~~i~~~~q~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~  184 (266)
                             ..++|++|++...+....+...++.   ......    ....+.++++.+++.....++++..|||||+||++
T Consensus        82 ~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~  161 (268)
T PRK10419         82 AQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVC  161 (268)
T ss_pred             hHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHH
Confidence                   2489999986322222223333221   111111    23457889999999644567889999999999999


Q ss_pred             HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529          185 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  259 (266)
Q Consensus       185 lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  259 (266)
                      |||||+.+|++|||||||++||+.++..+.+.|.++    +.|||++||+++++..+||++++|++|+++ ..|+.++.
T Consensus       162 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~-~~g~~~~~  239 (268)
T PRK10419        162 LARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIV-ETQPVGDK  239 (268)
T ss_pred             HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEe-eeCChhhc
Confidence            999999999999999999999999998887777543    569999999999999999999999999996 56766553

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.1e-46  Score=325.90  Aligned_cols=205  Identities=20%  Similarity=0.270  Sum_probs=166.3

Q ss_pred             CCCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC-----CCceEEEEcCe-------
Q 024529           51 PGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK-------  118 (266)
Q Consensus        51 ~~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~-------  118 (266)
                      ++.++|+++|++++|+ +..+|+++||+|++||+++|+||||||||||+++|+|+.+     |++|+|.+++.       
T Consensus        17 ~~~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~   95 (268)
T PRK14248         17 AKEHILEVKDLSIYYG-EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNI   95 (268)
T ss_pred             CCCceEEEEEEEEEeC-CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccc
Confidence            3456899999999995 4579999999999999999999999999999999999864     78999987652       


Q ss_pred             ------eeEEEEeccccCCCCCCCcHHHHHHHh--CCCC-----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHH
Q 024529          119 ------VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGV-----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSR  182 (266)
Q Consensus       119 ------~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqR  182 (266)
                            ..++|++|++.. +.  .+..+++...  ....     ..+.+.++++.+++..   ...++++.+|||||+||
T Consensus        96 ~~~~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr  172 (268)
T PRK14248         96 NVVNLRREIGMVFQKPNP-FP--KSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQR  172 (268)
T ss_pred             cHHHHhccEEEEecCCcc-Cc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHH
Confidence                  248999998632 11  2444443211  1111     1234667788888742   23467889999999999


Q ss_pred             HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          183 VAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       183 v~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      ++|||||+.+|++|||||||+|||+.++..+.+.|.++  +.|||++|||++++..+||++++|++|+++ +.|+.+++.
T Consensus       173 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~~  251 (268)
T PRK14248        173 LCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLV-EYDQTEQIF  251 (268)
T ss_pred             HHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence            99999999999999999999999999999998888765  469999999999999999999999999996 567777653

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=100.00  E-value=9.8e-46  Score=357.52  Aligned_cols=201  Identities=26%  Similarity=0.392  Sum_probs=171.2

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEEE
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV  123 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~  123 (266)
                      .++++||+|.|++++++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+++.           ..++|
T Consensus       349 ~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~  427 (588)
T PRK11174        349 TIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSW  427 (588)
T ss_pred             eEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEE
Confidence            4999999987755567999999999999999999999999999999999999 99999999874           36999


Q ss_pred             EeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHHccCC
Q 024529          124 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFKKP  193 (266)
Q Consensus       124 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqRv~lAral~~~p  193 (266)
                      ++|++..   +..+..+++....++.+++++.++++..++++...          ......||||||||++|||||+++|
T Consensus       428 v~Q~~~L---F~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~  504 (588)
T PRK11174        428 VGQNPQL---PHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPC  504 (588)
T ss_pred             ecCCCcC---CCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCC
Confidence            9999752   34567777655434567888888888887754322          1234679999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          194 HIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       194 ~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      +|||||||||+||+++.+.+.+.+.+.  +.|+|+|||+++.+. .||+|++|++|+++ ..|+.+++.+
T Consensus       505 ~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~-~aD~Iivl~~G~i~-e~G~~~eL~~  572 (588)
T PRK11174        505 QLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLA-QWDQIWVMQDGQIV-QQGDYAELSQ  572 (588)
T ss_pred             CEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHH-hCCEEEEEeCCeEe-ecCCHHHHHh
Confidence            999999999999999999999988765  479999999999887 59999999999997 5798887753

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.8e-47  Score=312.66  Aligned_cols=202  Identities=22%  Similarity=0.303  Sum_probs=163.4

Q ss_pred             CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCc-----eEEEEcCe---------
Q 024529           53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSS-----GTVFRSAK---------  118 (266)
Q Consensus        53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~-----G~i~~~~~---------  118 (266)
                      .+.++++||++.| +.+.+|+|||++|++++++|++||||||||||||++..+.....     |+|.++|+         
T Consensus         5 ~~~~~~~~l~~yY-g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~   83 (253)
T COG1117           5 IPAIEVRDLNLYY-GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV   83 (253)
T ss_pred             cceeEecceeEEE-CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence            3569999999999 46779999999999999999999999999999999999887764     99988774         


Q ss_pred             ----eeEEEEeccccCCCCCCCcHHHHHHHh---CC---CCcHHHHHHHHHhcCCCccc---ccCCCCCCChHHHHHHHH
Q 024529          119 ----VRIAVFSQHHVDGLDLSSNPLLYMMRC---FP---GVPEQKLRAHLGSFGVTGNL---ALQPMYTLSGGQKSRVAF  185 (266)
Q Consensus       119 ----~~i~~~~q~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~l~~~~l~~~~---~~~~~~~LSgGqkqRv~l  185 (266)
                          .++|++||.|.+ ++  .+.++++...   ..   ..-++.++..|+...|.++.   .++.+..|||||+||++|
T Consensus        84 ~~lRr~vGMVFQkPnP-Fp--~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcI  160 (253)
T COG1117          84 VELRRRVGMVFQKPNP-FP--MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCI  160 (253)
T ss_pred             HHHHHHheeeccCCCC-CC--chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHH
Confidence                369999998743 22  3444443321   11   12235567778877776433   345678899999999999


Q ss_pred             HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529          186 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  259 (266)
Q Consensus       186 Aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  259 (266)
                      ||||+.+|+|||||||||+|||.+...+.+.+.+.  .-|||+|||++..+.+++|+..++..|+++++ |+.+++
T Consensus       161 ARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~-g~T~~i  235 (253)
T COG1117         161 ARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEF-GPTDKI  235 (253)
T ss_pred             HHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEE-cCHHhh
Confidence            99999999999999999999999887777776655  35999999999999999999999999999865 555544

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9e-46  Score=323.56  Aligned_cols=203  Identities=22%  Similarity=0.268  Sum_probs=165.8

Q ss_pred             CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC-----CceEEEEcCe---------
Q 024529           53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK---------  118 (266)
Q Consensus        53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~---------  118 (266)
                      .++|+++|+++.|+ ++.+|+|+||+|++||+++|+|+||||||||+++|+|+++|     ++|+|.+++.         
T Consensus        10 ~~~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~   88 (258)
T PRK14268         10 QPQIKVENLNLWYG-EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV   88 (258)
T ss_pred             ceeEEEeeeEEEeC-CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence            45899999999995 45689999999999999999999999999999999999875     8999987653         


Q ss_pred             ----eeEEEEeccccCCCCCCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHH
Q 024529          119 ----VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAF  185 (266)
Q Consensus       119 ----~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv~l  185 (266)
                          ..++|++|++.. +.  .+..+++..  ......    .+++.++++.+++.+   ...++++.+|||||+||++|
T Consensus        89 ~~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~l  165 (258)
T PRK14268         89 VELRKNVGMVFQKPNP-FP--MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCI  165 (258)
T ss_pred             HHHhhhEEEEecCCcc-Cc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHH
Confidence                248999998632 22  344444321  111122    234677889888742   23567889999999999999


Q ss_pred             HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          186 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       186 Aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      ||||+.+|++|||||||++||+.++..+.+.|++.  +.|||+||||++++..+||++++|++|+++ +.|+.+++.
T Consensus       166 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~  241 (258)
T PRK14268        166 ARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELI-EFGQTRQIF  241 (258)
T ss_pred             HHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EeCCHHHHh
Confidence            99999999999999999999999999998888754  469999999999999999999999999996 567777653

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=100.00  E-value=6.5e-46  Score=356.18  Aligned_cols=205  Identities=24%  Similarity=0.424  Sum_probs=172.0

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCC
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD  133 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~  133 (266)
                      .+++++|++++|++++.+|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++...++|++|++.... 
T Consensus         3 ~~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~-   81 (552)
T TIGR03719         3 YIYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDP-   81 (552)
T ss_pred             EEEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCC-
Confidence            4799999999995345799999999999999999999999999999999999999999999877778999999864221 


Q ss_pred             CCCcHHHHHHHh-----------------C--CCC-----------------------cHHHHHHHHHhcCCCcccccCC
Q 024529          134 LSSNPLLYMMRC-----------------F--PGV-----------------------PEQKLRAHLGSFGVTGNLALQP  171 (266)
Q Consensus       134 ~~~~~~~~~~~~-----------------~--~~~-----------------------~~~~~~~~l~~~~l~~~~~~~~  171 (266)
                       ..++.+++...                 .  ...                       ...++.++++.+++. . .+++
T Consensus        82 -~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~-~~~~  158 (552)
T TIGR03719        82 -TKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP-P-WDAD  158 (552)
T ss_pred             -CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC-c-ccCc
Confidence             22332222100                 0  000                       013456677788885 2 4678


Q ss_pred             CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEe
Q 024529          172 MYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATP  251 (266)
Q Consensus       172 ~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~  251 (266)
                      +.+|||||||||+|||||+.+|++|||||||++||+.++.++.+.|.++++|||+||||++++..+||++++|++|+++.
T Consensus       159 ~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~l~~g~i~~  238 (552)
T TIGR03719       159 VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDRGRGIP  238 (552)
T ss_pred             hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEECCEEEE
Confidence            99999999999999999999999999999999999999999999999888899999999999999999999999999876


Q ss_pred             cCCChhHHHHH
Q 024529          252 FHGTFHDYKKM  262 (266)
Q Consensus       252 ~~g~~~~~~~~  262 (266)
                      +.|++++|.+.
T Consensus       239 ~~g~~~~~~~~  249 (552)
T TIGR03719       239 WEGNYSSWLEQ  249 (552)
T ss_pred             ecCCHHHHHHH
Confidence            88999987654

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=100.00  E-value=5.8e-46  Score=315.30  Aligned_cols=189  Identities=24%  Similarity=0.349  Sum_probs=158.1

Q ss_pred             EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------eeEEEEec
Q 024529           56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFSQ  126 (266)
Q Consensus        56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~i~~~~q  126 (266)
                      |+++|++++|++ ..  .|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++.         ..++|++|
T Consensus         1 i~~~~l~~~~~~-~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q   77 (211)
T cd03298           1 VRLDKIRFSYGE-QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQ   77 (211)
T ss_pred             CEEEeEEEEeCC-Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEec
Confidence            478999999953 32  3999999999999999999999999999999999999999998774         24899999


Q ss_pred             cccCCCCCCCcHHHHHHHhCC---C---CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 024529          127 HHVDGLDLSSNPLLYMMRCFP---G---VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE  200 (266)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDE  200 (266)
                      ++..  ....+..+++.....   .   ...+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||
T Consensus        78 ~~~~--~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDE  154 (211)
T cd03298          78 ENNL--FAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAG-LEKRLPGELSGGERQRVALARVLVRDKPVLLLDE  154 (211)
T ss_pred             cccc--CCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHH-HHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            8642  222344444432110   1   12446788999999974 4567889999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529          201 PSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKAT  250 (266)
Q Consensus       201 Pt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~  250 (266)
                      ||++||+.++..+.+.|.+.    +.|||++|||++++..+||++++|++|+++
T Consensus       155 P~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~  208 (211)
T cd03298         155 PFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIA  208 (211)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEe
Confidence            99999999999998887643    569999999999999999999999999986

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8e-46  Score=323.06  Aligned_cols=203  Identities=21%  Similarity=0.251  Sum_probs=166.4

Q ss_pred             CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC-----CceEEEEcCe---------
Q 024529           53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK---------  118 (266)
Q Consensus        53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~---------  118 (266)
                      .++|+++|+++.|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.+++.         
T Consensus         5 ~~~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~   83 (254)
T PRK14273          5 EAIIETENLNLFYT-DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI   83 (254)
T ss_pred             CceEEEeeeEEEeC-CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence            45899999999995 45699999999999999999999999999999999999987     4899987653         


Q ss_pred             ----eeEEEEeccccCCCCCCCcHHHHHHHh--CCC-C----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHH
Q 024529          119 ----VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPG-V----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVA  184 (266)
Q Consensus       119 ----~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~-~----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv~  184 (266)
                          ..++|++|++.. +  ..+..+++...  ... .    ..+.+.++++.+++..   ...++++.+||||||||++
T Consensus        84 ~~~~~~i~~v~q~~~~-~--~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~  160 (254)
T PRK14273         84 LELRRKIGMVFQTPNP-F--LMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLC  160 (254)
T ss_pred             HHHhhceEEEeecccc-c--cCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHH
Confidence                248999998642 2  23444443211  111 1    1345677888888731   2356788999999999999


Q ss_pred             HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          185 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       185 lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      |||||+.+|++|||||||++||+.++..+.+.|.++  +.|||++|||++++..+||++++|++|+++ ..|+.+++.
T Consensus       161 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~  237 (254)
T PRK14273        161 IARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIE-EESSTDELF  237 (254)
T ss_pred             HHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence            999999999999999999999999999998888765  469999999999999999999999999996 578877764

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.5e-46  Score=328.38  Aligned_cols=203  Identities=27%  Similarity=0.382  Sum_probs=167.9

Q ss_pred             CcEEEEeeEEEcCC-CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeE
Q 024529           54 PIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI  121 (266)
Q Consensus        54 ~~l~~~~l~~~y~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i  121 (266)
                      ++|+++||++.|++ .+.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.           ..+
T Consensus         4 ~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i   83 (279)
T PRK13635          4 EIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV   83 (279)
T ss_pred             ceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence            57999999999963 346999999999999999999999999999999999999999999998774           258


Q ss_pred             EEEeccccCCCCCCCcHHHHHHHh--CCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 024529          122 AVFSQHHVDGLDLSSNPLLYMMRC--FPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI  195 (266)
Q Consensus       122 ~~~~q~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~l  195 (266)
                      +|++|++.. .....+..+++...  .....    .+++.++++.+++.+ ..++++.+|||||+||++|||||+.+|++
T Consensus        84 ~~~~q~~~~-~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~LS~G~~qrv~laral~~~p~l  161 (279)
T PRK13635         84 GMVFQNPDN-QFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMED-FLNREPHRLSGGQKQRVAIAGVLALQPDI  161 (279)
T ss_pred             EEEEeCHHH-hcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChh-hhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence            999998621 11223444444211  11111    345788899999974 56788999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          196 ILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       196 llLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      |||||||+|||+.++..+.+.|.+.    +.|||++|||++++. .||++++|++|+++ +.|+.+++.
T Consensus       162 llLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~~~  228 (279)
T PRK13635        162 IILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAA-QADRVIVMNKGEIL-EEGTPEEIF  228 (279)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEEECCEEE-EECCHHHHh
Confidence            9999999999999999998887643    569999999999997 59999999999986 678877653

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=100.00  E-value=8.1e-46  Score=360.47  Aligned_cols=204  Identities=26%  Similarity=0.475  Sum_probs=171.5

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCC
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD  133 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~  133 (266)
                      ++|+++|++++|+ ++.+|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+.+...+++++|.+.... 
T Consensus         2 ~~l~i~~ls~~~~-~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~-   79 (635)
T PRK11147          2 SLISIHGAWLSFS-DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNV-   79 (635)
T ss_pred             cEEEEeeEEEEeC-CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCC-
Confidence            3799999999995 46799999999999999999999999999999999999999999999887667888887642111 


Q ss_pred             CCCcHHHHH---------------------------------HH------hCC-CCcHHHHHHHHHhcCCCcccccCCCC
Q 024529          134 LSSNPLLYM---------------------------------MR------CFP-GVPEQKLRAHLGSFGVTGNLALQPMY  173 (266)
Q Consensus       134 ~~~~~~~~~---------------------------------~~------~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~  173 (266)
                       ......++                                 ..      ... .....++.++++.+|+.   .++++.
T Consensus        80 -~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~---~~~~~~  155 (635)
T PRK11147         80 -EGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD---PDAALS  155 (635)
T ss_pred             -CCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC---CCCchh
Confidence             01111100                                 00      000 11245678889999996   268899


Q ss_pred             CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecC
Q 024529          174 TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFH  253 (266)
Q Consensus       174 ~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~  253 (266)
                      +|||||||||+|||||+.+|+||||||||||||+.++.++.+.|.++++|||+||||++++..+||+|++|++|+++.+.
T Consensus       156 ~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~~~  235 (635)
T PRK11147        156 SLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVSYP  235 (635)
T ss_pred             hcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEec
Confidence            99999999999999999999999999999999999999999999998889999999999999999999999999998788


Q ss_pred             CChhHHHHHH
Q 024529          254 GTFHDYKKML  263 (266)
Q Consensus       254 g~~~~~~~~~  263 (266)
                      |++++|.+..
T Consensus       236 g~~~~~~~~~  245 (635)
T PRK11147        236 GNYDQYLLEK  245 (635)
T ss_pred             CCHHHHHHHH
Confidence            9999986543

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=100.00  E-value=3.4e-46  Score=347.30  Aligned_cols=206  Identities=24%  Similarity=0.360  Sum_probs=176.0

Q ss_pred             CCCcEEEEeeEEEcCC------C----CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---
Q 024529           52 GPPIISFSDASFGYPG------G----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---  118 (266)
Q Consensus        52 ~~~~l~~~~l~~~y~~------~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---  118 (266)
                      ..++++++||++.|..      .    ..+++||||++.+||++||+|+||||||||.|+|+|+++|++|+|.+.+.   
T Consensus       277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~  356 (539)
T COG1123         277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLD  356 (539)
T ss_pred             cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccc
Confidence            4678999999999962      1    35799999999999999999999999999999999999999999998764   


Q ss_pred             ----------eeEEEEeccccCCCCCCCcHHHHHHHh---CCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHH
Q 024529          119 ----------VRIAVFSQHHVDGLDLSSNPLLYMMRC---FPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKS  181 (266)
Q Consensus       119 ----------~~i~~~~q~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkq  181 (266)
                                ..+-++||+++..++...++...+...   ...    ...+++.++++.+++.....++++++|||||||
T Consensus       357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQ  436 (539)
T COG1123         357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQ  436 (539)
T ss_pred             cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhH
Confidence                      257889999887777776665544321   111    123468888999999987788999999999999


Q ss_pred             HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChh
Q 024529          182 RVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFH  257 (266)
Q Consensus       182 Rv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~  257 (266)
                      |++|||||+.+|++|++|||||+||+..+..+++.|++    ++.|.|+||||+.++..+||||++|.+|++++ .|+.+
T Consensus       437 RvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE-~G~~~  515 (539)
T COG1123         437 RVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVE-EGPTE  515 (539)
T ss_pred             HHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEE-eCCHH
Confidence            99999999999999999999999999999998888764    46799999999999999999999999999974 56544


Q ss_pred             H
Q 024529          258 D  258 (266)
Q Consensus       258 ~  258 (266)
                      +
T Consensus       516 ~  516 (539)
T COG1123         516 K  516 (539)
T ss_pred             H
Confidence            4

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9.7e-46  Score=322.30  Aligned_cols=203  Identities=20%  Similarity=0.215  Sum_probs=165.3

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC-----CceEEEEcCe----------
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK----------  118 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~----------  118 (266)
                      ++|+++|+++.|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.+++.          
T Consensus         3 ~~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~   81 (253)
T PRK14267          3 FAIETVNLRVYYG-SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI   81 (253)
T ss_pred             ceEEEEeEEEEeC-CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence            4799999999995 45699999999999999999999999999999999999987     4999988653          


Q ss_pred             ---eeEEEEeccccCCCCCCCcHHHHHHHh--CCC---C---cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHH
Q 024529          119 ---VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPG---V---PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVA  184 (266)
Q Consensus       119 ---~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~---~---~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv~  184 (266)
                         ..++|++|++..  ....+..+++...  ...   .   ...++.++++.+++..   ...++++.+||||||||++
T Consensus        82 ~~~~~i~~~~q~~~~--~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~  159 (253)
T PRK14267         82 EVRREVGMVFQYPNP--FPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLV  159 (253)
T ss_pred             HHhhceeEEecCCcc--CCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHH
Confidence               248999998632  2223444433211  111   1   1235677888888742   2356788999999999999


Q ss_pred             HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          185 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       185 lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      |||||+.+|++|||||||++||+.++..+.+.|.+.  +.|||++|||++++..+||++++|++|+++ ..|+.+++.
T Consensus       160 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~  236 (253)
T PRK14267        160 IARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLI-EVGPTRKVF  236 (253)
T ss_pred             HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEE-EeCCHHHHH
Confidence            999999999999999999999999999998888764  469999999999999999999999999996 568877764

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7.4e-46  Score=327.75  Aligned_cols=203  Identities=23%  Similarity=0.335  Sum_probs=166.9

Q ss_pred             CcEEEEeeEEEcCC-----CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe----------
Q 024529           54 PIISFSDASFGYPG-----GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------  118 (266)
Q Consensus        54 ~~l~~~~l~~~y~~-----~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------  118 (266)
                      ++|+++|++++|++     .+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.          
T Consensus         3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~   82 (280)
T PRK13633          3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD   82 (280)
T ss_pred             ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHH
Confidence            47999999999963     246999999999999999999999999999999999999999999988753          


Q ss_pred             --eeEEEEeccccCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 024529          119 --VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF  190 (266)
Q Consensus       119 --~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~  190 (266)
                        ..++|++|++...+. ..+...++...  ....    ..+++.++++.+++.+ ..++++.+|||||+||++|||||+
T Consensus        83 ~~~~i~~v~q~~~~~~~-~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~LS~G~~qrv~laral~  160 (280)
T PRK13633         83 IRNKAGMVFQNPDNQIV-ATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYE-YRRHAPHLLSGGQKQRVAIAGILA  160 (280)
T ss_pred             HhhheEEEecChhhhhc-cccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHh-HhhCCcccCCHHHHHHHHHHHHHH
Confidence              248999998632121 12333333211  0011    1355788899999974 567889999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          191 KKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       191 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      .+|++|||||||+|||+.++..+.+.|.+.    +.|||+||||++++.. ||++++|++|+++ ..|+.+++.
T Consensus       161 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~~G~i~-~~g~~~~~~  232 (280)
T PRK13633        161 MRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVV-MEGTPKEIF  232 (280)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEECCEEE-EecCHHHHh
Confidence            999999999999999999999998887653    5699999999999986 9999999999996 578887764

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=100.00  E-value=4.5e-46  Score=319.23  Aligned_cols=197  Identities=20%  Similarity=0.354  Sum_probs=162.0

Q ss_pred             CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeE
Q 024529           53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI  121 (266)
Q Consensus        53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i  121 (266)
                      +++|+++|+++.|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.           ..+
T Consensus         5 ~~~i~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i   83 (225)
T PRK10247          5 SPLLQLQNVGYLAG-DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV   83 (225)
T ss_pred             CceEEEeccEEeeC-CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence            45799999999995 456999999999999999999999999999999999999999999998763           258


Q ss_pred             EEEeccccCCCCCCCcHHHHHHH---hCC-CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 024529          122 AVFSQHHVDGLDLSSNPLLYMMR---CFP-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIIL  197 (266)
Q Consensus       122 ~~~~q~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll  197 (266)
                      +|++|++.. +  ..+..+++..   ... ....+++.++++.+++.+...++++.+|||||+||++|||||+.+|++||
T Consensus        84 ~~~~q~~~l-~--~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll  160 (225)
T PRK10247         84 SYCAQTPTL-F--GDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLL  160 (225)
T ss_pred             EEEeccccc-c--cccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence            999998632 1  2244444321   111 12345677899999996445678899999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEe--CCeEEecCCCh
Q 024529          198 LDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVS--EGKATPFHGTF  256 (266)
Q Consensus       198 LDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~--~G~i~~~~g~~  256 (266)
                      |||||++||+.++..+.+.|.++    +.|||++|||.+++. .||++++|+  .|++  .+|++
T Consensus       161 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l~~~~~~~--~~~~~  222 (225)
T PRK10247        161 LDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKVITLQPHAGEM--QEARY  222 (225)
T ss_pred             EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEEecccchH--hhhhh
Confidence            99999999999999888877653    569999999999996 699999996  4555  35654

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.9e-45  Score=321.91  Aligned_cols=203  Identities=21%  Similarity=0.306  Sum_probs=166.2

Q ss_pred             CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC-----CCceEEEEcCe---------
Q 024529           53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK---------  118 (266)
Q Consensus        53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~---------  118 (266)
                      ..+|+++|+++.|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|.+++.         
T Consensus        11 ~~~l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~   89 (260)
T PRK10744         11 PSKIQVRNLNFYYG-KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDI   89 (260)
T ss_pred             CceEEEEEEEEEeC-CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccch
Confidence            45799999999995 4569999999999999999999999999999999999986     58999987652         


Q ss_pred             ----eeEEEEeccccCCCCCCCcHHHHHHHh---CCCCc----HHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHH
Q 024529          119 ----VRIAVFSQHHVDGLDLSSNPLLYMMRC---FPGVP----EQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVA  184 (266)
Q Consensus       119 ----~~i~~~~q~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv~  184 (266)
                          ..++|++|++.. +.  .+..+++...   .....    .+++.++++.+++..   ...++++.+|||||+||++
T Consensus        90 ~~~~~~i~~~~q~~~~-~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~  166 (260)
T PRK10744         90 ALLRAKVGMVFQKPTP-FP--MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLC  166 (260)
T ss_pred             HHHhcceEEEecCCcc-Cc--CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHH
Confidence                248999998632 22  3444443211   11111    245778899998742   2356788999999999999


Q ss_pred             HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          185 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       185 lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      |||||+.+|++|||||||++||+.++..+.+.|.+.  +.|||++||+++++..+||++++|++|+++ ..|+.+++.
T Consensus       167 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~  243 (260)
T PRK10744        167 IARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELI-EFGNTDTIF  243 (260)
T ss_pred             HHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence            999999999999999999999999999998888764  469999999999999999999999999997 567777653

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.9e-45  Score=323.02  Aligned_cols=204  Identities=20%  Similarity=0.239  Sum_probs=167.0

Q ss_pred             CCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC-----CceEEEEcCe--------
Q 024529           52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK--------  118 (266)
Q Consensus        52 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~--------  118 (266)
                      ..++|+++||++.|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|     ++|+|++++.        
T Consensus        16 ~~~~l~~~nl~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~   94 (267)
T PRK14235         16 TEIKMRARDVSVFYG-EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD   94 (267)
T ss_pred             CCceEEEEeEEEEEC-CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccc
Confidence            345899999999995 45699999999999999999999999999999999999875     8999988762        


Q ss_pred             -----eeEEEEeccccCCCCCCCcHHHHHHHh--CCC------CcHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHH
Q 024529          119 -----VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPG------VPEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSR  182 (266)
Q Consensus       119 -----~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~------~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqR  182 (266)
                           ..++|++|++.. +.  .+..+++...  ...      ...+++.++++.+++..   ...++++.+||||||||
T Consensus        95 ~~~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr  171 (267)
T PRK14235         95 VVELRARVGMVFQKPNP-FP--KSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQR  171 (267)
T ss_pred             hHHHhhceEEEecCCCC-CC--CcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHH
Confidence                 248999998632 11  2444443211  111      11345678899999853   13457889999999999


Q ss_pred             HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          183 VAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       183 v~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      ++|||||+.+|++|||||||++||+.++..+.+.|.+.  +.|||+||||++++..+||++++|++|+++ ..|+.+++.
T Consensus       172 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~  250 (267)
T PRK14235        172 LCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLV-EVGDTEKMF  250 (267)
T ss_pred             HHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEE-EeCCHHHHH
Confidence            99999999999999999999999999999998888764  469999999999999999999999999996 567777664

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=1.1e-46  Score=316.02  Aligned_cols=204  Identities=23%  Similarity=0.423  Sum_probs=174.7

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-------eeEEEEecc
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------VRIAVFSQH  127 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------~~i~~~~q~  127 (266)
                      ++++++|+++| ++..+++|+||++++|++.|++|||||||||.+|+|+|++.|++|+|.+++.       .+|||+|.+
T Consensus         2 ~L~ie~vtK~F-g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEE   80 (300)
T COG4152           2 ALEIEGVTKSF-GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEE   80 (300)
T ss_pred             ceEEecchhcc-CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhh
Confidence            58999999999 5677999999999999999999999999999999999999999999999884       479999998


Q ss_pred             ccCCCCCCCcHHHHHH--HhCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 024529          128 HVDGLDLSSNPLLYMM--RCFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP  201 (266)
Q Consensus       128 ~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEP  201 (266)
                      .-  ++...++.+.+.  ....+.+    ..++..+|+++++.+. ..+++.+||.|++|++.+..+++++|+++|||||
T Consensus        81 RG--Ly~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~-~~~kIk~LSKGnqQKIQfisaviHePeLlILDEP  157 (300)
T COG4152          81 RG--LYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGK-KTKKIKELSKGNQQKIQFISAVIHEPELLILDEP  157 (300)
T ss_pred             hc--cCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcccccc-ccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCC
Confidence            53  344445544332  1122333    3457789999999864 5689999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHh---hcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHHHH
Q 024529          202 SNHLDLDAVEALIQGLV---LFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKML  263 (266)
Q Consensus       202 t~~LD~~~~~~l~~~l~---~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~  263 (266)
                      ||||||.+.+.+.+.+.   +.+.|||++||.++-++.+||++++|++|+.+ .+|+.+++++..
T Consensus       158 FSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V-~~G~v~~ir~~~  221 (300)
T COG4152         158 FSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTV-LYGTVEDIRRSF  221 (300)
T ss_pred             ccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceE-EeccHHHHHHhc
Confidence            99999999888777654   55789999999999999999999999999986 789999987643

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.5e-45  Score=324.37  Aligned_cols=204  Identities=27%  Similarity=0.383  Sum_probs=166.6

Q ss_pred             CCcEEEEeeEEEcCC-CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------ee
Q 024529           53 PPIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR  120 (266)
Q Consensus        53 ~~~l~~~~l~~~y~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~  120 (266)
                      .++|+++|+++.|++ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.           ..
T Consensus         5 ~~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~   84 (271)
T PRK13632          5 SVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKK   84 (271)
T ss_pred             ceEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcc
Confidence            358999999999953 457999999999999999999999999999999999999999999988763           24


Q ss_pred             EEEEeccccCCCCCCCcHHHHHHHh--CCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 024529          121 IAVFSQHHVDGLDLSSNPLLYMMRC--FPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH  194 (266)
Q Consensus       121 i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~  194 (266)
                      ++|++|++...+ ...+..+++...  .....    ...+.++++.+++.+ ..++++.+|||||+||++|||||+.+|+
T Consensus        85 i~~v~q~~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~laral~~~p~  162 (271)
T PRK13632         85 IGIIFQNPDNQF-IGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMED-YLDKEPQNLSGGQKQRVAIASVLALNPE  162 (271)
T ss_pred             eEEEEeCHHHhc-CcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHH-HhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence            899999862111 123444443211  11111    234678899999974 5678889999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          195 IILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       195 lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      +|||||||+|||+.++..+.+.|.+.    +.|||++||+++++. .||++++|++|++. ..|+.+++.
T Consensus       163 lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~~  230 (271)
T PRK13632        163 IIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLI-AQGKPKEIL  230 (271)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEECCEEE-EecCHHHHh
Confidence            99999999999999999998888654    369999999999986 79999999999996 567776653

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=100.00  E-value=1.4e-45  Score=316.61  Aligned_cols=201  Identities=22%  Similarity=0.393  Sum_probs=160.7

Q ss_pred             EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEEEE
Q 024529           56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAVF  124 (266)
Q Consensus        56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~~  124 (266)
                      |+++|+++.|++.+.+++|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++.           ..++|+
T Consensus         3 l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~   82 (229)
T cd03254           3 IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVV   82 (229)
T ss_pred             EEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEe
Confidence            789999999964446899999999999999999999999999999999999999999998763           248999


Q ss_pred             eccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCc----------ccccCCCCCCChHHHHHHHHHHHHccCCC
Q 024529          125 SQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTG----------NLALQPMYTLSGGQKSRVAFAKITFKKPH  194 (266)
Q Consensus       125 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkqRv~lAral~~~p~  194 (266)
                      +|++.. +  ..+..+++..........++.+.++.+++..          ...++++.+||||||||++|||||+.+|+
T Consensus        83 ~q~~~~-~--~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~  159 (229)
T cd03254          83 LQDTFL-F--SGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK  159 (229)
T ss_pred             cCCchh-h--hhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence            998631 1  2244444432211222334444444444321          12345678999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          195 IILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       195 lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      +|||||||++||+.++..+.+.+.+.  +.|||+|||+++++. .||++++|++|++. +.|+.+++..
T Consensus       160 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d~i~~l~~g~~~-~~~~~~~~~~  226 (229)
T cd03254         160 ILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIK-NADKILVLDDGKII-EEGTHDELLA  226 (229)
T ss_pred             EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHh-hCCEEEEEeCCeEE-EeCCHHHHHh
Confidence            99999999999999999998888765  469999999999997 59999999999996 5788877754

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.8e-46  Score=359.77  Aligned_cols=206  Identities=20%  Similarity=0.256  Sum_probs=170.2

Q ss_pred             CCcEEEEeeEEEcCC----------CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe----
Q 024529           53 PPIISFSDASFGYPG----------GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----  118 (266)
Q Consensus        53 ~~~l~~~~l~~~y~~----------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~----  118 (266)
                      .++|+++||++.|+.          ...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++++.    
T Consensus       311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~  390 (623)
T PRK10261        311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDT  390 (623)
T ss_pred             CceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCc
Confidence            468999999999952          135899999999999999999999999999999999999999999998763    


Q ss_pred             ----------eeEEEEeccccCCCCCCCcHHHHHHH---hCCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHH
Q 024529          119 ----------VRIAVFSQHHVDGLDLSSNPLLYMMR---CFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKS  181 (266)
Q Consensus       119 ----------~~i~~~~q~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkq  181 (266)
                                ..++|++|++...+....+...++..   ....    ...+++.++++.+++.....++++.+|||||||
T Consensus       391 ~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQ  470 (623)
T PRK10261        391 LSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQ  470 (623)
T ss_pred             CCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHH
Confidence                      24899999863233333344443321   1111    112467889999999644567889999999999


Q ss_pred             HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChh
Q 024529          182 RVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFH  257 (266)
Q Consensus       182 Rv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~  257 (266)
                      ||+|||||+.+|+||||||||++||+.++.++++.|.+    .+.|||+||||++++..+||+|++|++|+++ ..|+.+
T Consensus       471 Rv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv-~~g~~~  549 (623)
T PRK10261        471 RICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIV-EIGPRR  549 (623)
T ss_pred             HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EecCHH
Confidence            99999999999999999999999999999998888754    3679999999999999999999999999997 567776


Q ss_pred             HH
Q 024529          258 DY  259 (266)
Q Consensus       258 ~~  259 (266)
                      ++
T Consensus       550 ~i  551 (623)
T PRK10261        550 AV  551 (623)
T ss_pred             HH
Confidence            65

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=100.00  E-value=2.1e-45  Score=317.22  Aligned_cols=200  Identities=23%  Similarity=0.443  Sum_probs=158.9

Q ss_pred             EEEEeeEEEcCC-CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEEE
Q 024529           56 ISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV  123 (266)
Q Consensus        56 l~~~~l~~~y~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~  123 (266)
                      ++++|+++.|++ +..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+++.           ..++|
T Consensus         1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   80 (237)
T cd03252           1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV   80 (237)
T ss_pred             CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence            478999999953 356899999999999999999999999999999999999999999998773           24899


Q ss_pred             EeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHH---------HHhc--CCCcccccCCCCCCChHHHHHHHHHHHHccC
Q 024529          124 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAH---------LGSF--GVTGNLALQPMYTLSGGQKSRVAFAKITFKK  192 (266)
Q Consensus       124 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------l~~~--~l~~~~~~~~~~~LSgGqkqRv~lAral~~~  192 (266)
                      ++|++.. +  ..+..+++...........+.+.         ++.+  ++.. ..++++.+|||||||||+|||||+.+
T Consensus        81 ~~q~~~~-~--~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~LSgG~~qrv~laral~~~  156 (237)
T cd03252          81 VLQENVL-F--NRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDT-IVGEQGAGLSGGQRQRIAIARALIHN  156 (237)
T ss_pred             EcCCchh-c--cchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccc-hhhcCCCcCCHHHHHHHHHHHHHhhC
Confidence            9998632 2  23444444321111222233333         3333  3332 23567899999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          193 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       193 p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      |++|||||||++||+.++..+.+.|.+.  +.|||++|||++++. .||++++|++|+++ +.|+.+++..
T Consensus       157 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~-~~~~~~~~~~  225 (237)
T cd03252         157 PRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVK-NADRIIVMEKGRIV-EQGSHDELLA  225 (237)
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH-hCCEEEEEECCEEE-EEcCHHHHHh
Confidence            9999999999999999999998888764  469999999999996 59999999999996 6788777643

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.8e-45  Score=319.46  Aligned_cols=201  Identities=21%  Similarity=0.248  Sum_probs=165.8

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC---CCceEEEEcCe-----------ee
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ---PSSGTVFRSAK-----------VR  120 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~~~-----------~~  120 (266)
                      +++++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++   |++|+|.+++.           ..
T Consensus         2 ~~~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~   80 (246)
T PRK14269          2 IAKTTNLNLFYG-KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKN   80 (246)
T ss_pred             ceeeeeeEEEEC-CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhh
Confidence            588999999995 4579999999999999999999999999999999999974   79999998764           24


Q ss_pred             EEEEeccccCCCCCCCcHHHHHHHh--CCC------CcHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHHHHHH
Q 024529          121 IAVFSQHHVDGLDLSSNPLLYMMRC--FPG------VPEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAFAKIT  189 (266)
Q Consensus       121 i~~~~q~~~~~~~~~~~~~~~~~~~--~~~------~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv~lAral  189 (266)
                      ++|++|++.. +.  .+..+++...  ...      ....++.++++.+++..   ...++++.+|||||+||++|||||
T Consensus        81 i~~~~q~~~l-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral  157 (246)
T PRK14269         81 VGMVFQQPNV-FV--KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARAL  157 (246)
T ss_pred             EEEEecCCcc-cc--ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHH
Confidence            8999998632 22  3455444211  101      12235678899999953   234677899999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          190 FKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       190 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      +.+|++|||||||++||+.++..+.+.|.+.  +.|||+|||+++++..+||++++|++|+++ ..|+.+++.
T Consensus       158 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~  229 (246)
T PRK14269        158 AIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELI-EFGESKEFF  229 (246)
T ss_pred             hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEE-EECCHHHHH
Confidence            9999999999999999999999998888753  579999999999999999999999999997 567776654

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.3e-45  Score=319.47  Aligned_cols=202  Identities=20%  Similarity=0.280  Sum_probs=164.9

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCC---CCC--CceEEEEcCe----------
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE---LQP--SSGTVFRSAK----------  118 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl---~~p--~~G~i~~~~~----------  118 (266)
                      ++|+++|+++.|+ .+.+|+|+||+|++||+++|+||||||||||+++|+|+   ++|  ++|+|.+++.          
T Consensus         2 ~~l~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~   80 (250)
T PRK14245          2 VKIDARDVNFWYG-DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD   80 (250)
T ss_pred             cEEEEEEEEEEEC-CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence            5799999999995 45699999999999999999999999999999999997   455  5899987763          


Q ss_pred             ---eeEEEEeccccCCCCCCCcHHHHHHH--hCCCC-----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHH
Q 024529          119 ---VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV-----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAF  185 (266)
Q Consensus       119 ---~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv~l  185 (266)
                         ..++|++|++.. +.  .+..+++..  .....     ..+.+.++++.+++.+   ...++++.+||||||||++|
T Consensus        81 ~~~~~i~~v~q~~~~-~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l  157 (250)
T PRK14245         81 ELRKNVGMVFQRPNP-FP--KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCI  157 (250)
T ss_pred             HHhhheEEEecCCcc-Cc--ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHH
Confidence               148999998632 11  244444321  11111     2345678889898853   23567889999999999999


Q ss_pred             HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          186 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       186 Aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      ||||+.+|++|||||||+|||+.++..+.+.|.+.  +.|||+||||++++..+||++++|++|+++ ..|+++++.
T Consensus       158 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~-~~~~~~~~~  233 (250)
T PRK14245        158 ARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMV-EYDDTKKIF  233 (250)
T ss_pred             HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEE-EECCHHHHh
Confidence            99999999999999999999999999998888764  468999999999999999999999999996 678877764

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=100.00  E-value=3.3e-45  Score=315.17  Aligned_cols=200  Identities=26%  Similarity=0.347  Sum_probs=166.0

Q ss_pred             EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------eeEEEEec
Q 024529           56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFSQ  126 (266)
Q Consensus        56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~i~~~~q  126 (266)
                      |.++|++++|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.         ..++|++|
T Consensus         1 l~~~~l~~~~~-~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q   79 (232)
T cd03300           1 IELENVSKFYG-GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQ   79 (232)
T ss_pred             CEEEeEEEEeC-CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEec
Confidence            46899999995 457999999999999999999999999999999999999999999998764         35899999


Q ss_pred             cccCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 024529          127 HHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE  200 (266)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDE  200 (266)
                      ++...  ...+..+++...  ....    ...++.++++.+++.+ ..++.+.+||+||+||++|||||+.+|++|||||
T Consensus        80 ~~~~~--~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~lS~G~~qrl~laral~~~p~llllDE  156 (232)
T cd03300          80 NYALF--PHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEG-YANRKPSQLSGGQQQRVAIARALVNEPKVLLLDE  156 (232)
T ss_pred             ccccC--CCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            86422  122344333211  1111    2346678899999974 5677889999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          201 PSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       201 Pt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      ||+|||+.++..+.+.+.++    +.|||++||+++++..+||++++|++|++. ..|+.+++.
T Consensus       157 P~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~-~~~~~~~~~  219 (232)
T cd03300         157 PLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQ-QIGTPEEIY  219 (232)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE-ecCCHHHHH
Confidence            99999999999998877643    579999999999999999999999999996 567776654

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.2e-45  Score=323.05  Aligned_cols=204  Identities=21%  Similarity=0.271  Sum_probs=166.3

Q ss_pred             CCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC-----CCceEEEEcCe--------
Q 024529           52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK--------  118 (266)
Q Consensus        52 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~--------  118 (266)
                      +.++|+++|+++.|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|.+++.        
T Consensus        36 ~~~~l~i~~l~~~~~-~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~  114 (285)
T PRK14254         36 GETVIEARDLNVFYG-DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD  114 (285)
T ss_pred             CCceEEEEEEEEEEC-CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence            567899999999995 4569999999999999999999999999999999999987     68999988653        


Q ss_pred             -----eeEEEEeccccCCCCCCCcHHHHHHHh-----CCCCcHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHH
Q 024529          119 -----VRIAVFSQHHVDGLDLSSNPLLYMMRC-----FPGVPEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAF  185 (266)
Q Consensus       119 -----~~i~~~~q~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv~l  185 (266)
                           ..++|++|++.. +.  .+..+++...     ......+++.++++.+++..   ...++++.+||||||||++|
T Consensus       115 ~~~~~~~i~~v~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~L  191 (285)
T PRK14254        115 PVALRRRIGMVFQKPNP-FP--KSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCI  191 (285)
T ss_pred             hHhhhccEEEEecCCcc-Cc--CCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHH
Confidence                 248999998632 11  2444443211     11112446778899998842   23567889999999999999


Q ss_pred             HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEE-EEeCCeEEecCCChhHHH
Q 024529          186 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELW-VVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       186 Aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~-~l~~G~i~~~~g~~~~~~  260 (266)
                      ||||+.+|+||||||||++||+.++..+.+.|+++  +.|||++|||++++..+||+++ +|++|+++ ..|+.+++.
T Consensus       192 AraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~-~~g~~~~~~  268 (285)
T PRK14254        192 ARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELV-EFDDTDKIF  268 (285)
T ss_pred             HHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEE-EeCCHHHHH
Confidence            99999999999999999999999999998888765  4699999999999999999975 57999996 567776653

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.9e-45  Score=322.22  Aligned_cols=204  Identities=28%  Similarity=0.352  Sum_probs=166.0

Q ss_pred             CCcEEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------ee
Q 024529           53 PPIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR  120 (266)
Q Consensus        53 ~~~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~  120 (266)
                      .++|+++|+++.|++. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.           ..
T Consensus         5 ~~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~   84 (269)
T PRK13648          5 NSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKH   84 (269)
T ss_pred             CceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhh
Confidence            4579999999999643 35899999999999999999999999999999999999999999998774           24


Q ss_pred             EEEEeccccCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 024529          121 IAVFSQHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH  194 (266)
Q Consensus       121 i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~  194 (266)
                      ++|++|++...+ ...+...++...  ....    ..+++.++++.+++.+ ..++++.+|||||+||++|||||+.+|+
T Consensus        85 i~~v~q~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~laral~~~p~  162 (269)
T PRK13648         85 IGIVFQNPDNQF-VGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLE-RADYEPNALSGGQKQRVAIAGVLALNPS  162 (269)
T ss_pred             eeEEEeChHHhc-ccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCch-hhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence            899999863111 112222222111  0111    1245678899999974 5678889999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          195 IILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       195 lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      +|||||||++||+.++..+.+.|.+.    +.|||+|||+++++.. ||++++|++|+++ ..|+.+++.
T Consensus       163 lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~~G~i~-~~g~~~~~~  230 (269)
T PRK13648        163 VIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVY-KEGTPTEIF  230 (269)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEECCEEE-EecCHHHHh
Confidence            99999999999999999988887653    5699999999999985 9999999999996 568877653

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=2.7e-45  Score=312.08  Aligned_cols=191  Identities=24%  Similarity=0.344  Sum_probs=159.3

Q ss_pred             CCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee--------eEEE
Q 024529           52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV--------RIAV  123 (266)
Q Consensus        52 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~--------~i~~  123 (266)
                      ++++|+++|++++|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++..        .++|
T Consensus         8 ~~~~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~   86 (214)
T PRK13543          8 APPLLAAHALAFSRN-EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAY   86 (214)
T ss_pred             CcceEEEeeEEEecC-CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEE
Confidence            456899999999995 4569999999999999999999999999999999999999999999988742        3899


Q ss_pred             EeccccCCCCCCCcHHHHHHH---hCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 024529          124 FSQHHVDGLDLSSNPLLYMMR---CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE  200 (266)
Q Consensus       124 ~~q~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDE  200 (266)
                      ++|.+..  ....+..+++..   .......+.+.++++.+++.+ ..++++.+||||||||++||||++.+|++|||||
T Consensus        87 ~~q~~~~--~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~llllDE  163 (214)
T PRK13543         87 LGHLPGL--KADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAG-YEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDE  163 (214)
T ss_pred             eecCccc--ccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChh-hccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            9987532  222244443321   111123456678899999974 4678899999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeC
Q 024529          201 PSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSE  246 (266)
Q Consensus       201 Pt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~  246 (266)
                      ||++||+.+++.+.+.+.+.   +.|||++|||.+++..+||++++++.
T Consensus       164 Pt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~  212 (214)
T PRK13543        164 PYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA  212 (214)
T ss_pred             CcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence            99999999999988887653   67999999999999999999999864

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=100.00  E-value=2.8e-45  Score=312.94  Aligned_cols=190  Identities=28%  Similarity=0.447  Sum_probs=157.5

Q ss_pred             EEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEEE
Q 024529           56 ISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV  123 (266)
Q Consensus        56 l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~  123 (266)
                      |+++|+++.|++. ..+|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.+++.           ..++|
T Consensus         3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   82 (220)
T cd03245           3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGY   82 (220)
T ss_pred             EEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEE
Confidence            7899999999642 46899999999999999999999999999999999999999999998774           25899


Q ss_pred             EeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccC-----------CCCCCChHHHHHHHHHHHHccC
Q 024529          124 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQ-----------PMYTLSGGQKSRVAFAKITFKK  192 (266)
Q Consensus       124 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~~LSgGqkqRv~lAral~~~  192 (266)
                      ++|++.. +.  .+..+++...........+.++++.+++.+. .++           ++.+||||||||++|||||+.+
T Consensus        83 ~~q~~~~-~~--~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~  158 (220)
T cd03245          83 VPQDVTL-FY--GTLRDNITLGAPLADDERILRAAELAGVTDF-VNKHPNGLDLQIGERGRGLSGGQRQAVALARALLND  158 (220)
T ss_pred             eCCCCcc-cc--chHHHHhhcCCCCCCHHHHHHHHHHcCcHHH-HHhccccccceecCCCccCCHHHHHHHHHHHHHhcC
Confidence            9998632 12  2455544322112234566778888888643 333           3469999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529          193 PHIILLDEPSNHLDLDAVEALIQGLVLFQ--GGILMVSHDEHLISGSVEELWVVSEGKAT  250 (266)
Q Consensus       193 p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~tiiivtHd~~~~~~~~d~i~~l~~G~i~  250 (266)
                      |++|||||||+|||+.++..+.+.|.++.  .|||++|||++++ .+||++++|++|+++
T Consensus       159 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~-~~~d~v~~l~~g~i~  217 (220)
T cd03245         159 PPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL-DLVDRIIVMDSGRIV  217 (220)
T ss_pred             CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-HhCCEEEEEeCCeEe
Confidence            99999999999999999999999887653  5999999999987 599999999999986

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.9e-45  Score=319.66  Aligned_cols=203  Identities=19%  Similarity=0.278  Sum_probs=166.0

Q ss_pred             CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC--C---CceEEEEcCe---------
Q 024529           53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ--P---SSGTVFRSAK---------  118 (266)
Q Consensus        53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p---~~G~i~~~~~---------  118 (266)
                      .++|+++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++  |   ++|+|.+++.         
T Consensus        10 ~~~l~i~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~   88 (259)
T PRK14274         10 QEVYQINGMNLWYG-QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL   88 (259)
T ss_pred             CceEEEeeEEEEEC-CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence            46899999999995 4569999999999999999999999999999999999987  3   6899987653         


Q ss_pred             ----eeEEEEeccccCCCCCCCcHHHHHHH--hCCC-Cc----HHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHH
Q 024529          119 ----VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG-VP----EQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVA  184 (266)
Q Consensus       119 ----~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~-~~----~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv~  184 (266)
                          ..++|++|++.. +.  .+..+++..  .... ..    .+++.++++.+++.+   ...++++.+|||||+||++
T Consensus        89 ~~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~  165 (259)
T PRK14274         89 VELRKNIGMVFQKGNP-FP--QSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLC  165 (259)
T ss_pred             HHHhhceEEEecCCcc-cc--cCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHH
Confidence                248999998632 12  244444321  1111 11    234667788888753   2346788999999999999


Q ss_pred             HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          185 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       185 lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      |||||+.+|++|||||||++||+.++..+.+.|.+.  +.|||+||||++++..+||++++|++|+++ ..|+.+++.
T Consensus       166 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~  242 (259)
T PRK14274        166 IARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELV-ECNDTNKMF  242 (259)
T ss_pred             HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEE-EECCHHHHh
Confidence            999999999999999999999999999998888765  469999999999999999999999999996 578888764

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.4e-45  Score=319.18  Aligned_cols=202  Identities=20%  Similarity=0.212  Sum_probs=164.3

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC-----CceEEEEcCe-----------
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK-----------  118 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~-----------  118 (266)
                      +|+++|++++|++ ..+|+++||+|++||+++|+||||||||||+++|+|+++|     ++|+|.+++.           
T Consensus         4 ~l~i~~v~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~   82 (258)
T PRK14241          4 RIDVKDLNIYYGS-FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA   82 (258)
T ss_pred             cEEEeeEEEEECC-EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHH
Confidence            6899999999954 5699999999999999999999999999999999999874     7999998663           


Q ss_pred             --eeEEEEeccccCCCCCCCcHHHHHHH---hCCC----CcHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHHH
Q 024529          119 --VRIAVFSQHHVDGLDLSSNPLLYMMR---CFPG----VPEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAFA  186 (266)
Q Consensus       119 --~~i~~~~q~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv~lA  186 (266)
                        ..++|++|++..  ....+..+++..   ....    ...+.+.++++.+++.+   ...++++.+|||||+||++||
T Consensus        83 ~~~~i~~~~q~~~~--~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la  160 (258)
T PRK14241         83 VRRTIGMVFQRPNP--FPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIA  160 (258)
T ss_pred             HhcceEEEcccccc--CCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHH
Confidence              248999997532  222344444321   1111    11245677888888742   345678899999999999999


Q ss_pred             HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEe------CCeEEecCCChhH
Q 024529          187 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVS------EGKATPFHGTFHD  258 (266)
Q Consensus       187 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~------~G~i~~~~g~~~~  258 (266)
                      |||+.+|++|||||||++||+.++..+.+.|.+.  +.|||+|||+++++..+||++++|+      +|+++ ..|+.++
T Consensus       161 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~-~~~~~~~  239 (258)
T PRK14241        161 RAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLV-EIDDTEK  239 (258)
T ss_pred             HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEE-ecCCHHH
Confidence            9999999999999999999999999998888754  4699999999999999999999997      79996 5788777


Q ss_pred             HH
Q 024529          259 YK  260 (266)
Q Consensus       259 ~~  260 (266)
                      +.
T Consensus       240 ~~  241 (258)
T PRK14241        240 IF  241 (258)
T ss_pred             HH
Confidence            63

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-45  Score=351.48  Aligned_cols=201  Identities=22%  Similarity=0.252  Sum_probs=168.1

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------eeE
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI  121 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~i  121 (266)
                      ++|+++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.            ..+
T Consensus         4 ~~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i   82 (510)
T PRK09700          4 PYISMAGIGKSFG-PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI   82 (510)
T ss_pred             ceEEEeeeEEEcC-CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe
Confidence            5799999999995 456899999999999999999999999999999999999999999998763            248


Q ss_pred             EEEeccccCCCCCCCcHHHHHHHhC------CC-------CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHH
Q 024529          122 AVFSQHHVDGLDLSSNPLLYMMRCF------PG-------VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKI  188 (266)
Q Consensus       122 ~~~~q~~~~~~~~~~~~~~~~~~~~------~~-------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAra  188 (266)
                      +|++|++..  ....+..+++....      ..       ...+++.++++.+++.+ ..++++.+|||||||||+||||
T Consensus        83 ~~v~q~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgG~~qrv~ia~a  159 (510)
T PRK09700         83 GIIYQELSV--IDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKV-DLDEKVANLSISHKQMLEIAKT  159 (510)
T ss_pred             EEEeecccc--cCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCC-CcccchhhCCHHHHHHHHHHHH
Confidence            999998632  22233444432110      01       01245778899999974 5678999999999999999999


Q ss_pred             HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529          189 TFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  259 (266)
Q Consensus       189 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  259 (266)
                      |+.+|++|||||||+|||+.++..+.+.|++.   +.|||+||||++++..+||++++|++|+++ +.|+++++
T Consensus       160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~  232 (510)
T PRK09700        160 LMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSV-CSGMVSDV  232 (510)
T ss_pred             HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEe-eecchhhC
Confidence            99999999999999999999999988877653   579999999999999999999999999996 67887765

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.8e-45  Score=321.46  Aligned_cols=204  Identities=22%  Similarity=0.251  Sum_probs=164.9

Q ss_pred             CCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC-----CCceEEEEcCe--------
Q 024529           52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK--------  118 (266)
Q Consensus        52 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~--------  118 (266)
                      ..++|+++|+++.|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|.+++.        
T Consensus        10 ~~~~l~i~nl~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~   88 (269)
T PRK14259         10 KNIIISLQNVTISYG-TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD   88 (269)
T ss_pred             CCceEEEEeEEEEEC-CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence            356899999999995 4568999999999999999999999999999999999987     68999988763        


Q ss_pred             -----eeEEEEeccccCCCCCCCcHHHHHHHh--CCCC---cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHH
Q 024529          119 -----VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGV---PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAF  185 (266)
Q Consensus       119 -----~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv~l  185 (266)
                           ..++|++|++.. +.  .+..+++...  ....   ..+++.++++.+++..   ...++++.+||||||||++|
T Consensus        89 ~~~~~~~i~~v~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~l  165 (269)
T PRK14259         89 PVEVRRRIGMVFQQPNP-FP--KSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCI  165 (269)
T ss_pred             HHHHhhceEEEccCCcc-ch--hhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHH
Confidence                 248999998632 11  2444444211  1111   1345667788887632   23567889999999999999


Q ss_pred             HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeC-----------CeEEec
Q 024529          186 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSE-----------GKATPF  252 (266)
Q Consensus       186 Aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~-----------G~i~~~  252 (266)
                      ||||+.+|++|||||||++||+.++..+.+.|.++  +.|||++|||++++..+||++++|++           |+++ .
T Consensus       166 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~-~  244 (269)
T PRK14259        166 ARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLV-E  244 (269)
T ss_pred             HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEE-E
Confidence            99999999999999999999999999998888764  46899999999999999999999996           4565 5


Q ss_pred             CCChhHHH
Q 024529          253 HGTFHDYK  260 (266)
Q Consensus       253 ~g~~~~~~  260 (266)
                      .|+++++.
T Consensus       245 ~~~~~~~~  252 (269)
T PRK14259        245 FNETKKIF  252 (269)
T ss_pred             eCCHHHHH
Confidence            68877763

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.3e-45  Score=317.38  Aligned_cols=203  Identities=20%  Similarity=0.230  Sum_probs=165.9

Q ss_pred             CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC-----CceEEEEcCe---------
Q 024529           53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK---------  118 (266)
Q Consensus        53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~---------  118 (266)
                      +++|+++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+.+|     ++|+|.+++.         
T Consensus         2 ~~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~   80 (251)
T PRK14270          2 KIKMESKNLNLWYG-EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV   80 (251)
T ss_pred             ccEEEEEEeEEEEC-CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence            36899999999995 45689999999999999999999999999999999999875     7999988653         


Q ss_pred             ----eeEEEEeccccCCCCCCCcHHHHHHH--hCCCC-----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHH
Q 024529          119 ----VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV-----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVA  184 (266)
Q Consensus       119 ----~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv~  184 (266)
                          ..++|++|++.. +.  .+..+++..  .....     ..+++.++++.+++.+   ...++++.+||||||||++
T Consensus        81 ~~~~~~i~~~~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~  157 (251)
T PRK14270         81 VELRKRVGMVFQKPNP-FP--MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLC  157 (251)
T ss_pred             HHHHhheEEEecCCCc-CC--CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHH
Confidence                248999998642 22  344444321  11111     1245667888888742   2356788999999999999


Q ss_pred             HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          185 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       185 lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      |||||+.+|++|||||||+|||+.++..+.+.|.++  +.|||+|||+++++..+||++++|++|+++ ..|+.+++.
T Consensus       158 laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~~  234 (251)
T PRK14270        158 IARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLI-EFNKTEKIF  234 (251)
T ss_pred             HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEE-EeCCHHHHh
Confidence            999999999999999999999999999998888764  469999999999999999999999999997 567777653

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1.5e-45  Score=307.88  Aligned_cols=204  Identities=24%  Similarity=0.361  Sum_probs=169.4

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------eeE
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI  121 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~i  121 (266)
                      ++|+++||+..|+ ...+|++|||++++||+++|+|+||+|||||||+|+|+.+|.+|+|.+.|+            ..+
T Consensus         2 ~mL~v~~l~~~YG-~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi   80 (237)
T COG0410           2 PMLEVENLSAGYG-KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI   80 (237)
T ss_pred             CceeEEeEeeccc-ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence            5899999999994 567999999999999999999999999999999999999999999999875            359


Q ss_pred             EEEeccccCCCCCCCcHHHHHHHh-C--CC-Cc-HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 024529          122 AVFSQHHVDGLDLSSNPLLYMMRC-F--PG-VP-EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII  196 (266)
Q Consensus       122 ~~~~q~~~~~~~~~~~~~~~~~~~-~--~~-~~-~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll  196 (266)
                      +|+||....  ....++.+++... +  +. .. ...++++.+.|-.-.+..+++.++|||||+|.++|||||+.+|++|
T Consensus        81 ~~VPegR~i--F~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklL  158 (237)
T COG0410          81 AYVPEGRRI--FPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLL  158 (237)
T ss_pred             EeCcccccc--hhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEE
Confidence            999997532  2334455554321 1  11 11 1125667777754445677899999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          197 LLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       197 lLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      ||||||.||-|.-.+++.+.+++.    +.||++|.++..++..++||.++|++|+++ +.|+.+++..
T Consensus       159 LLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv-~~G~~~eL~~  226 (237)
T COG0410         159 LLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIV-LSGTAAELLA  226 (237)
T ss_pred             EecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEE-EecCHHHHhc
Confidence            999999999999888888777653    349999999999999999999999999997 8999888754

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=100.00  E-value=7.7e-46  Score=298.57  Aligned_cols=200  Identities=24%  Similarity=0.343  Sum_probs=164.3

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee---------eEEEEe
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV---------RIAVFS  125 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~---------~i~~~~  125 (266)
                      |+.+++|++.|+ ..  -=.++++|+.||+++|+|||||||||||++|+|++.|.+|+|++++..         -++++|
T Consensus         1 ~l~L~~V~~~y~-~~--~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlF   77 (231)
T COG3840           1 MLALDDVRFSYG-HL--PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLF   77 (231)
T ss_pred             CccccceEEeeC-cc--eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhh
Confidence            467899999994 32  246799999999999999999999999999999999999999998753         377888


Q ss_pred             ccccCCCCCCCcHHHHHHHh-CC-----CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 024529          126 QHHVDGLDLSSNPLLYMMRC-FP-----GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD  199 (266)
Q Consensus       126 q~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLD  199 (266)
                      |++..  ....++..++... .+     ...++++..++.++|+.+. .++.+.+|||||||||+|||+|+++-+|||||
T Consensus        78 QEnNL--FaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~-~~RLP~~LSGGqRQRvALARclvR~~PilLLD  154 (231)
T COG3840          78 QENNL--FAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGF-LKRLPGELSGGQRQRVALARCLVREQPILLLD  154 (231)
T ss_pred             hcccc--chhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhH-hhhCccccCchHHHHHHHHHHHhccCCeEEec
Confidence            87532  2222333333211 11     2346778999999999864 56788999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          200 EPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       200 EPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      ||||+|||.-+.++...+.+    .+.|++||||.++.+.+++++++++++|+|. +.|+.+++..
T Consensus       155 EPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~-~~g~~~~~~~  219 (231)
T COG3840         155 EPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIA-AQGSTQELLS  219 (231)
T ss_pred             CchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEE-eeccHHHHhc
Confidence            99999999988887776653    3579999999999999999999999999996 7898887743

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.8e-45  Score=318.20  Aligned_cols=202  Identities=20%  Similarity=0.290  Sum_probs=164.9

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC-----CCceEEEEcCe----------
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK----------  118 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~----------  118 (266)
                      ++|+++|++++|+ .+.+|+++||+|++||+++|+|+||||||||+++|+|+++     |++|+|.+++.          
T Consensus         3 ~~l~~~~l~~~~~-~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~   81 (251)
T PRK14251          3 NIISAKDVHLSYG-NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV   81 (251)
T ss_pred             ceEEEEeeEEEEC-CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence            4799999999995 4579999999999999999999999999999999999987     47999987763          


Q ss_pred             ---eeEEEEeccccCCCCCCCcHHHHHHHh--CCCC-----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHH
Q 024529          119 ---VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGV-----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAF  185 (266)
Q Consensus       119 ---~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv~l  185 (266)
                         ..++|++|++.. +.  .+..+++...  ....     ..+++.++++.+++..   ...++++.+|||||+||++|
T Consensus        82 ~~~~~i~~~~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~l  158 (251)
T PRK14251         82 ELRKEVGMVFQQPTP-FP--FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICI  158 (251)
T ss_pred             HhhccEEEEecCCcc-CC--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHH
Confidence               248999998632 22  3444443211  1111     1245677888888842   23467889999999999999


Q ss_pred             HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          186 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       186 Aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      ||||+.+|++|||||||++||+.++..+.+.|.++  +.|||+||||++++..+||++++|++|+++ ..|+.+++.
T Consensus       159 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~  234 (251)
T PRK14251        159 ARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLI-EAGPTEEMF  234 (251)
T ss_pred             HHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEE-EeCCHHHHH
Confidence            99999999999999999999999999998888765  569999999999999999999999999996 467776653

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.6e-45  Score=316.99  Aligned_cols=201  Identities=21%  Similarity=0.274  Sum_probs=163.4

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC-----CceEEEEcCe-----------
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK-----------  118 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~-----------  118 (266)
                      .|+++||++.|+ ++.+++|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.+++.           
T Consensus         3 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~   81 (250)
T PRK14240          3 KISVKDLDLFYG-DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQ   81 (250)
T ss_pred             eEEEEEEEEEEC-CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHH
Confidence            589999999995 45699999999999999999999999999999999999763     6999988753           


Q ss_pred             --eeEEEEeccccCCCCCCCcHHHHHHH--hCCCC-----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHHH
Q 024529          119 --VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV-----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAFA  186 (266)
Q Consensus       119 --~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv~lA  186 (266)
                        ..++|++|++.. +.  .+...++..  .....     ..+.+.++++.+++.+   ...++++.+|||||+||++||
T Consensus        82 ~~~~i~~~~q~~~~-~~--~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la  158 (250)
T PRK14240         82 LRKRVGMVFQQPNP-FP--MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIA  158 (250)
T ss_pred             HhccEEEEecCCcc-Cc--ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHH
Confidence              248999998532 22  344444321  11111     2345667788887642   234678899999999999999


Q ss_pred             HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          187 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       187 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      |||+.+|++|||||||++||+.++..+.+.|.+.  +.|||+||||++.+..+||++++|++|+++ ..|+.+++.
T Consensus       159 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~~  233 (250)
T PRK14240        159 RALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIV-EFGDTVDLF  233 (250)
T ss_pred             HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEE-EeCCHHHHH
Confidence            9999999999999999999999999998888764  469999999999999999999999999997 567777654

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=100.00  E-value=5e-45  Score=310.15  Aligned_cols=193  Identities=26%  Similarity=0.368  Sum_probs=159.9

Q ss_pred             EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------eeEEEEec
Q 024529           56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFSQ  126 (266)
Q Consensus        56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~i~~~~q  126 (266)
                      ++++|+++.|+ .  .+.|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.         ..++|++|
T Consensus         1 ~~~~~l~~~~~-~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q   77 (213)
T TIGR01277         1 LALDKVRYEYE-H--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQ   77 (213)
T ss_pred             CeEEeeeEEeC-C--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEec
Confidence            46899999995 2  468999999999999999999999999999999999999999998764         24899999


Q ss_pred             cccCCCCCCCcHHHHHHHhC-C--C---CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 024529          127 HHVDGLDLSSNPLLYMMRCF-P--G---VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE  200 (266)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~-~--~---~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDE  200 (266)
                      ++.  +....+..+++.... .  .   ....++.++++.+++.+ ..++++.+|||||+||++|||||+.+|++|||||
T Consensus        78 ~~~--~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~laral~~~p~llllDE  154 (213)
T TIGR01277        78 ENN--LFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIAD-YLDRLPEQLSGGQRQRVALARCLVRPNPILLLDE  154 (213)
T ss_pred             cCc--cCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHH-HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            863  222234444442110 0  1   12456778999999964 5678899999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCC
Q 024529          201 PSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGT  255 (266)
Q Consensus       201 Pt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~  255 (266)
                      ||++||+.++..+.+.|.+.    +.|||+|||+.+++..+||++++|++|++. ..|.
T Consensus       155 Pt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~-~~~~  212 (213)
T TIGR01277       155 PFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIK-VVSD  212 (213)
T ss_pred             CCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEE-EecC
Confidence            99999999999888877653    569999999999999999999999999996 3443

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.1e-45  Score=317.24  Aligned_cols=202  Identities=22%  Similarity=0.276  Sum_probs=165.4

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC-----CceEEEEcCe----------
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK----------  118 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~----------  118 (266)
                      ++|+++|+++.|+ +..+|+++||+|++||+++|+||||||||||+++|+|+++|     ++|+|.+++.          
T Consensus         2 ~~l~~~~l~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~   80 (250)
T PRK14262          2 PIIEIENFSAYYG-EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVT   80 (250)
T ss_pred             ceEEEEeeEEEeC-CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHH
Confidence            3799999999995 45789999999999999999999999999999999999874     8999987762          


Q ss_pred             ---eeEEEEeccccCCCCCCCcHHHHHHH--hCCC-C----cHHHHHHHHHhcCCCcc---cccCCCCCCChHHHHHHHH
Q 024529          119 ---VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG-V----PEQKLRAHLGSFGVTGN---LALQPMYTLSGGQKSRVAF  185 (266)
Q Consensus       119 ---~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~-~----~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqRv~l  185 (266)
                         ..++|++|++.. +.  .+..+++..  .... .    ..+.+.++++.+++...   ..++++.+|||||+||++|
T Consensus        81 ~~~~~i~~~~q~~~~-~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~l  157 (250)
T PRK14262         81 EYRKKVGMVFQKPTP-FP--MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCI  157 (250)
T ss_pred             HhhhhEEEEecCCcc-Cc--ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHH
Confidence               248999998642 22  344444321  1111 1    12346677888888532   3567889999999999999


Q ss_pred             HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          186 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       186 Aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      ||||+.+|++|||||||++||+.++..+.+.|.+.  +.|||+||||++++..+||++++|++|+++ ..|+.+++.
T Consensus       158 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~  233 (250)
T PRK14262        158 ARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELI-EYGPTREIV  233 (250)
T ss_pred             HHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEE-EecCHHHHH
Confidence            99999999999999999999999999998888764  469999999999999999999999999996 568877764

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=100.00  E-value=6.1e-45  Score=358.73  Aligned_cols=203  Identities=23%  Similarity=0.383  Sum_probs=172.8

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEE
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA  122 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~  122 (266)
                      ..|+++||+|+|++++.+|+|+||+|++|+.+||+||||||||||+++|+|+++|++|+|.+++.           ..++
T Consensus       472 ~~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~  551 (708)
T TIGR01193       472 GDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFIN  551 (708)
T ss_pred             CcEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheE
Confidence            35999999999975567999999999999999999999999999999999999999999999884           3699


Q ss_pred             EEeccccCCCCCCCcHHHHHHHh-CCCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHHcc
Q 024529          123 VFSQHHVDGLDLSSNPLLYMMRC-FPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFK  191 (266)
Q Consensus       123 ~~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqRv~lAral~~  191 (266)
                      |++|++..   +..+..+++... .+..+++++.++++..++.+...          ......||||||||++|||||++
T Consensus       552 ~v~Q~~~l---f~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~  628 (708)
T TIGR01193       552 YLPQEPYI---FSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLT  628 (708)
T ss_pred             EEecCcee---hhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhh
Confidence            99999752   345666666543 23466778888888887754322          12346799999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhc-CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          192 KPHIILLDEPSNHLDLDAVEALIQGLVLF-QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      +|++|||||||++||+.+.+.+.+.|.+. +.|+|+|||+++.+. .||+|++|++|+++ ..|+.+++.+
T Consensus       629 ~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~~-~~D~i~~l~~G~i~-~~G~~~~L~~  697 (708)
T TIGR01193       629 DSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVAK-QSDKIIVLDHGKII-EQGSHDELLD  697 (708)
T ss_pred             CCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHHH-cCCEEEEEECCEEE-EECCHHHHHh
Confidence            99999999999999999999999988775 579999999999886 69999999999997 5799888754

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=100.00  E-value=5.7e-45  Score=320.63  Aligned_cols=200  Identities=27%  Similarity=0.408  Sum_probs=165.5

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCC--------ceEEEEcCee-------
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS--------SGTVFRSAKV-------  119 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~--------~G~i~~~~~~-------  119 (266)
                      ||+++|++++|+ ++.+|+++||+|++|++++|+||||||||||+++|+|+++|+        +|+|.+++..       
T Consensus         1 ml~~~nl~~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~   79 (272)
T PRK13547          1 MLTADHLHVARR-HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP   79 (272)
T ss_pred             CeEEEEEEEEEC-CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence            589999999995 457999999999999999999999999999999999999998        9999987631       


Q ss_pred             ----eEEEEeccccCCCCCCCcHHHHHHHh-CC---------CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHH
Q 024529          120 ----RIAVFSQHHVDGLDLSSNPLLYMMRC-FP---------GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAF  185 (266)
Q Consensus       120 ----~i~~~~q~~~~~~~~~~~~~~~~~~~-~~---------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~l  185 (266)
                          .++|++|++...+  ..+..+++... ..         ....+.+.++++.+++.. ..++++.+|||||+|||+|
T Consensus        80 ~~~~~~~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~l  156 (272)
T PRK13547         80 RLARLRAVLPQAAQPAF--AFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATA-LVGRDVTTLSGGELARVQF  156 (272)
T ss_pred             HHHhhcEEecccCCCCC--CCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHh-hhcCCcccCCHHHHHHHHH
Confidence                3789999853222  23444444221 00         012345778899999974 4578899999999999999


Q ss_pred             HHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEec
Q 024529          186 AKITF---------KKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPF  252 (266)
Q Consensus       186 Aral~---------~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~  252 (266)
                      ||||+         .+|++|||||||++||+.++..+.+.+.++    +.|||+||||++++..+||++++|++|+++ .
T Consensus       157 aral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~-~  235 (272)
T PRK13547        157 ARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIV-A  235 (272)
T ss_pred             HHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEE-E
Confidence            99999         599999999999999999999998877643    579999999999999999999999999996 5


Q ss_pred             CCChhHH
Q 024529          253 HGTFHDY  259 (266)
Q Consensus       253 ~g~~~~~  259 (266)
                      .|+.+++
T Consensus       236 ~g~~~~~  242 (272)
T PRK13547        236 HGAPADV  242 (272)
T ss_pred             ecCHHHH
Confidence            6887765

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=100.00  E-value=9.6e-45  Score=356.65  Aligned_cols=206  Identities=27%  Similarity=0.411  Sum_probs=175.6

Q ss_pred             CcEEEEeeEEEcCC-CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeE
Q 024529           54 PIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI  121 (266)
Q Consensus        54 ~~l~~~~l~~~y~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i  121 (266)
                      ..|+++||+|+|++ .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+++.           ..+
T Consensus       462 ~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i  541 (694)
T TIGR03375       462 GEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNI  541 (694)
T ss_pred             ceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhcc
Confidence            35999999999964 356999999999999999999999999999999999999999999999874           369


Q ss_pred             EEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc----------CCCCCCChHHHHHHHHHHHHcc
Q 024529          122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKITFK  191 (266)
Q Consensus       122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqRv~lAral~~  191 (266)
                      +|++|++..   +..+..+++....+..+++++.++++.+++.+....          .....||||||||++|||||+.
T Consensus       542 ~~v~Q~~~l---f~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~  618 (694)
T TIGR03375       542 GYVPQDPRL---FYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLR  618 (694)
T ss_pred             EEECCChhh---hhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhc
Confidence            999999742   345666776544344678888888888887543322          2346799999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHHHHh
Q 024529          192 KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQ  264 (266)
Q Consensus       192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~  264 (266)
                      +|++||||||||+||+.+...+.+.+.+.  +.|+|+|||+++.+. .||+|++|++|+++ ..|+.+++.+...
T Consensus       619 ~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~-~~D~iivl~~G~i~-e~G~~~eLl~~~~  691 (694)
T TIGR03375       619 DPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLD-LVDRIIVMDNGRIV-ADGPKDQVLEALR  691 (694)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEEeCCEEE-eeCCHHHHHHHhh
Confidence            99999999999999999999999998765  579999999999886 69999999999997 5799999876543

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=100.00  E-value=6.5e-45  Score=316.02  Aligned_cols=201  Identities=22%  Similarity=0.373  Sum_probs=160.2

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCC--CCCceEEEEcCe------------ee
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL--QPSSGTVFRSAK------------VR  120 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--~p~~G~i~~~~~------------~~  120 (266)
                      +|+++|+++.|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|++  +|++|+|.+++.            ..
T Consensus         1 ~i~~~nl~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~   79 (248)
T PRK09580          1 MLSIKDLHVSVE-DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG   79 (248)
T ss_pred             CeEEEEEEEEeC-CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence            588999999995 456999999999999999999999999999999999995  699999988763            24


Q ss_pred             EEEEeccccCCCCCCCcHHHHHH---H---hCCC---Cc----HHHHHHHHHhcCCCcccccCCCC-CCChHHHHHHHHH
Q 024529          121 IAVFSQHHVDGLDLSSNPLLYMM---R---CFPG---VP----EQKLRAHLGSFGVTGNLALQPMY-TLSGGQKSRVAFA  186 (266)
Q Consensus       121 i~~~~q~~~~~~~~~~~~~~~~~---~---~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~~-~LSgGqkqRv~lA  186 (266)
                      ++|++|++......  +...+..   .   ....   ..    .+.+.+.++.+++.+...++++. +||||||||++||
T Consensus        80 i~~~~q~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~la  157 (248)
T PRK09580         80 IFMAFQYPVEIPGV--SNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDIL  157 (248)
T ss_pred             eEEEecCchhccch--hHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHH
Confidence            88999886322111  1111110   0   0000   11    23456788888986445566665 7999999999999


Q ss_pred             HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHHhh-cCEEEEEeCCeEEecCCChhHH
Q 024529          187 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGS-VEELWVVSEGKATPFHGTFHDY  259 (266)
Q Consensus       187 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~~~~~-~d~i~~l~~G~i~~~~g~~~~~  259 (266)
                      |||+.+|++|||||||++||+.++..+.+.+++   .+.|||++|||++++..+ ||++++|++|+++ +.|+++..
T Consensus       158 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~-~~g~~~~~  233 (248)
T PRK09580        158 QMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIV-KSGDFTLV  233 (248)
T ss_pred             HHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEE-EeCCHHHH
Confidence            999999999999999999999999998886654   357999999999999887 8999999999996 67887744

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=100.00  E-value=2.3e-45  Score=350.82  Aligned_cols=205  Identities=20%  Similarity=0.327  Sum_probs=166.2

Q ss_pred             CcEEEEeeEEEcCC---CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC-----CceEEEEcCe-------
Q 024529           54 PIISFSDASFGYPG---GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK-------  118 (266)
Q Consensus        54 ~~l~~~~l~~~y~~---~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~-------  118 (266)
                      ++|+++|+++.|++   ...+|+++||+|.+||+++|+||||||||||+|+|+|+++|     ++|+|.+++.       
T Consensus         4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~   83 (529)
T PRK15134          4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASE   83 (529)
T ss_pred             ceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCH
Confidence            57999999999953   24699999999999999999999999999999999999986     7999987652       


Q ss_pred             --------eeEEEEeccccCCCCCCCcHHHHHH---HhCCCC----cHHHHHHHHHhcCCCcc--cccCCCCCCChHHHH
Q 024529          119 --------VRIAVFSQHHVDGLDLSSNPLLYMM---RCFPGV----PEQKLRAHLGSFGVTGN--LALQPMYTLSGGQKS  181 (266)
Q Consensus       119 --------~~i~~~~q~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~~l~~~~l~~~--~~~~~~~~LSgGqkq  181 (266)
                              ..++|++|++...+....+....+.   ......    ..+++.++++.+++.+.  ..++++.+|||||||
T Consensus        84 ~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~q  163 (529)
T PRK15134         84 QTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQ  163 (529)
T ss_pred             HHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHH
Confidence                    2489999986321222222222221   111111    23567889999999642  346789999999999


Q ss_pred             HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChh
Q 024529          182 RVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFH  257 (266)
Q Consensus       182 Rv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~  257 (266)
                      ||+|||||+.+|++|||||||++||+.++.++.+.|++    .+.|||+||||++++..+||+|++|++|+++ +.|+++
T Consensus       164 rv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~-~~g~~~  242 (529)
T PRK15134        164 RVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV-EQNRAA  242 (529)
T ss_pred             HHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE-EeCCHH
Confidence            99999999999999999999999999999999888765    3679999999999999999999999999986 567776


Q ss_pred             HH
Q 024529          258 DY  259 (266)
Q Consensus       258 ~~  259 (266)
                      ++
T Consensus       243 ~~  244 (529)
T PRK15134        243 TL  244 (529)
T ss_pred             HH
Confidence            65

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.4e-45  Score=316.48  Aligned_cols=202  Identities=22%  Similarity=0.308  Sum_probs=164.3

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCC--CC---CceEEEEcCe----------
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL--QP---SSGTVFRSAK----------  118 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--~p---~~G~i~~~~~----------  118 (266)
                      ++|+++|++++|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+.  +|   ++|+|.+++.          
T Consensus         4 ~~l~~~~l~~~~~-~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~   82 (252)
T PRK14239          4 PILQVSDLSVYYN-KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV   82 (252)
T ss_pred             ceEEEEeeEEEEC-CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence            4799999999995 456999999999999999999999999999999999985  46   5999988763          


Q ss_pred             ---eeEEEEeccccCCCCCCCcHHHHHHHh--CCCC-----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHH
Q 024529          119 ---VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGV-----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAF  185 (266)
Q Consensus       119 ---~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv~l  185 (266)
                         ..++|++|++.. +.  .+..+++...  ....     ..+++.++++.+++..   ...++++.+||||||||++|
T Consensus        83 ~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l  159 (252)
T PRK14239         83 DLRKEIGMVFQQPNP-FP--MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCI  159 (252)
T ss_pred             hhhhcEEEEecCCcc-Cc--CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHH
Confidence               248999998632 22  3444443211  1111     1245667788888742   23467889999999999999


Q ss_pred             HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          186 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       186 Aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      ||||+.+|++|||||||++||+.++..+.+.|.+.  +.|||++|||++++..+||++++|++|+++ ..|+.+++.
T Consensus       160 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~  235 (252)
T PRK14239        160 ARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLI-EYNDTKQMF  235 (252)
T ss_pred             HHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence            99999999999999999999999999998888764  469999999999999999999999999996 568777663

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.3e-45  Score=320.87  Aligned_cols=205  Identities=19%  Similarity=0.284  Sum_probs=164.6

Q ss_pred             CCCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC-----CCceEEEEcCe-------
Q 024529           51 PGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK-------  118 (266)
Q Consensus        51 ~~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~-------  118 (266)
                      |+.++|+++|+++.|+ +..+|+|+||+|++||+++|+|+||||||||+++|+|+++     |++|+|.+++.       
T Consensus        20 ~~~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~   98 (271)
T PRK14238         20 PKKVVFDTQNLNLWYG-EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSY   98 (271)
T ss_pred             CCceEEEEeeeEEEEC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccc
Confidence            3456899999999995 4569999999999999999999999999999999999987     69999988763       


Q ss_pred             ------eeEEEEeccccCCCCCCCcHHHHHHHh--CCCC-c----HHHHHHHHHhcCCCc---ccccCCCCCCChHHHHH
Q 024529          119 ------VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGV-P----EQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSR  182 (266)
Q Consensus       119 ------~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~-~----~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqR  182 (266)
                            ..++|++|++.. +.  .+..+++...  .... .    ...+.+.++.+++..   ...++++.+||||||||
T Consensus        99 ~~~~~~~~i~~v~q~~~~-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qr  175 (271)
T PRK14238         99 SVEELRTNVGMVFQKPNP-FP--KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQR  175 (271)
T ss_pred             cHHHHhhhEEEEecCCcc-cc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHH
Confidence                  248999998632 11  2444444311  1111 1    223455666664321   23467889999999999


Q ss_pred             HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          183 VAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       183 v~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      ++|||||+.+|++|||||||++||+.++..+.+.|.+.  +.|||+||||++++..+||++++|++|+++ ..|+.+++.
T Consensus       176 v~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~-~~g~~~~~~  254 (271)
T PRK14238        176 LCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVN-EYDDTDKIF  254 (271)
T ss_pred             HHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence            99999999999999999999999999999998888654  469999999999999999999999999996 567777653

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.4e-45  Score=356.29  Aligned_cols=208  Identities=19%  Similarity=0.301  Sum_probs=168.8

Q ss_pred             CCCcEEEEeeEEEcCC---CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe----------
Q 024529           52 GPPIISFSDASFGYPG---GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------  118 (266)
Q Consensus        52 ~~~~l~~~~l~~~y~~---~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------  118 (266)
                      .+++|+++|+++.|++   ...+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+++.          
T Consensus         9 ~~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~   88 (623)
T PRK10261          9 ARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVI   88 (623)
T ss_pred             CCceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccc
Confidence            4568999999999953   236899999999999999999999999999999999999999999986541          


Q ss_pred             ---------------eeEEEEeccccCCCCCCCcHHHHHHH---hCCCC----cHHHHHHHHHhcCCCc--ccccCCCCC
Q 024529          119 ---------------VRIAVFSQHHVDGLDLSSNPLLYMMR---CFPGV----PEQKLRAHLGSFGVTG--NLALQPMYT  174 (266)
Q Consensus       119 ---------------~~i~~~~q~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~l~~~~l~~--~~~~~~~~~  174 (266)
                                     ..++|++|++...+....++.+++..   .....    ..+++.++++.+|+.+  ...++++.+
T Consensus        89 ~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~  168 (623)
T PRK10261         89 ELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQ  168 (623)
T ss_pred             ccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCcc
Confidence                           24899999863222222344443321   11111    1356778899999963  245788999


Q ss_pred             CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529          175 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKAT  250 (266)
Q Consensus       175 LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~  250 (266)
                      |||||||||+|||||+.+|+||||||||++||+.++.++.+.+++    .+.|||+||||++++..+||+|++|++|+++
T Consensus       169 LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~  248 (623)
T PRK10261        169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAV  248 (623)
T ss_pred             CCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeec
Confidence            999999999999999999999999999999999998887776654    2679999999999999999999999999997


Q ss_pred             ecCCChhHHH
Q 024529          251 PFHGTFHDYK  260 (266)
Q Consensus       251 ~~~g~~~~~~  260 (266)
                       ..|+++++.
T Consensus       249 -~~g~~~~~~  257 (623)
T PRK10261        249 -ETGSVEQIF  257 (623)
T ss_pred             -ccCCHHHhh
Confidence             578877663

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.2e-45  Score=319.05  Aligned_cols=203  Identities=20%  Similarity=0.243  Sum_probs=166.3

Q ss_pred             CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC-----CCceEEEEcCe---------
Q 024529           53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK---------  118 (266)
Q Consensus        53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~---------  118 (266)
                      .++|+++|++++|+ ++.+|+|+||+|.+||+++|+||||||||||+++|+|+++     |++|+|.+++.         
T Consensus        18 ~~~l~~~nl~~~~~-~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~   96 (267)
T PRK14237         18 EIALSTKDLHVYYG-KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV   96 (267)
T ss_pred             CeEEEEeeEEEEEC-CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCCh
Confidence            45899999999995 4679999999999999999999999999999999999986     58999987663         


Q ss_pred             ----eeEEEEeccccCCCCCCCcHHHHHHHh--CCCC-----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHH
Q 024529          119 ----VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGV-----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVA  184 (266)
Q Consensus       119 ----~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv~  184 (266)
                          ..++|++|++.. +.  .+..+++...  ....     ...++.++++.+++.+   ...++++.+|||||+||++
T Consensus        97 ~~~~~~i~~v~q~~~~-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~  173 (267)
T PRK14237         97 YEMRKHIGMVFQRPNP-FA--KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLC  173 (267)
T ss_pred             HHHhcceEEEecCCcc-cc--ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHH
Confidence                248999998532 11  2454444321  1111     1245667788888842   2356788999999999999


Q ss_pred             HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          185 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       185 lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      |||||+.+|++|||||||++||+.++..+.+.|.+.  +.|||+|||+++++..+||++++|++|+++ ..|+.+++.
T Consensus       174 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~  250 (267)
T PRK14237        174 IARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLI-EYDKTRNIF  250 (267)
T ss_pred             HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEE-EeCCHHHHh
Confidence            999999999999999999999999999988887754  468999999999999999999999999997 568877763

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.4e-45  Score=322.55  Aligned_cols=203  Identities=28%  Similarity=0.380  Sum_probs=167.0

Q ss_pred             CcEEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCc---eEEEEcCe-----------
Q 024529           54 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSS---GTVFRSAK-----------  118 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~~~-----------  118 (266)
                      .+|+++|+++.|++. ..+|+++||+|++||+++|+||||||||||+++|+|+++|++   |+|.+++.           
T Consensus         4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~   83 (282)
T PRK13640          4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR   83 (282)
T ss_pred             ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence            479999999999642 468999999999999999999999999999999999999998   89988763           


Q ss_pred             eeEEEEeccccCCCCCCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccC
Q 024529          119 VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK  192 (266)
Q Consensus       119 ~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~  192 (266)
                      ..++|++|++...+ ...+..+++..  ......    .+++.++++.+++.+ ..++++.+|||||+||++|||||+.+
T Consensus        84 ~~ig~v~q~~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LS~G~~qrv~laral~~~  161 (282)
T PRK13640         84 EKVGIVFQNPDNQF-VGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLD-YIDSEPANLSGGQKQRVAIAGILAVE  161 (282)
T ss_pred             hheEEEEECHHHhh-ccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChh-HhcCCcccCCHHHHHHHHHHHHHHcC
Confidence            24899999862111 22344444421  111222    245778899999974 56788999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          193 PHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       193 p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      |++|||||||+|||+.++..+.+.|.+.    +.|||++||+++++. .||++++|++|+++ ..|+.+++.
T Consensus       162 P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~~~  231 (282)
T PRK13640        162 PKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVLDDGKLL-AQGSPVEIF  231 (282)
T ss_pred             CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEE-EeCCHHHHh
Confidence            9999999999999999999888887653    569999999999995 79999999999997 578877753

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=9.1e-46  Score=337.14  Aligned_cols=264  Identities=49%  Similarity=0.798  Sum_probs=241.0

Q ss_pred             ChHHHHHHhhhhhhHHHHHHHHHHHHhccCcccccCCCCcccccCCCCCCCCCCcEEEEeeEEEcCCCC-cceeeceEEE
Q 024529            1 MQSFIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGP-ILFKNLNFGI   79 (266)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~-~~l~~vsl~i   79 (266)
                      +|.||++|++++++++.+++|++.++++.....+..++.....||.+.....+|.+++.+|+|.|..+. .++.++++++
T Consensus       308 ~q~fid~FrYna~ra~svqSRIk~L~kl~~lk~~~~~~~~~~~fP~~~e~~~~p~l~i~~V~f~y~p~~y~~~~~~~~d~  387 (582)
T KOG0062|consen  308 LQVFIDKFRYNAARASSVQSRIKMLGKLPALKSTLIEVLIGFLFPTEGEVLSPPNLRISYVAFEYTPSEYQWRKQLGLDR  387 (582)
T ss_pred             HHHHHHHhccCcccchhHHHHHHHhccCCCCCccceecccceecCCCCCcCCCCeeEEEeeeccCCCcchhhhhccCCcc
Confidence            478999999999999999999999999887766665555555666644445678999999999997665 6899999999


Q ss_pred             eCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHH
Q 024529           80 DLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLG  159 (266)
Q Consensus        80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  159 (266)
                      +.-+.++++|+||+||||+++++.|-..|..|.+...++.+++|..|+..+.++...+.++.+...+++..+++++..+.
T Consensus       388 e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~  467 (582)
T KOG0062|consen  388 ESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLG  467 (582)
T ss_pred             chhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999988777777778888888888889999999999


Q ss_pred             hcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcC
Q 024529          160 SFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVE  239 (266)
Q Consensus       160 ~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d  239 (266)
                      .||++.++..+++..||||||-||++|.+...+|.+|+||||||+||.++..++.+.|+.+++.||+||||.+|+..+|+
T Consensus       468 ~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~GGVv~VSHd~~fi~~~c~  547 (582)
T KOG0062|consen  468 SFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFNGGVVLVSHDEEFISSLCK  547 (582)
T ss_pred             hcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcCCcEEEEECcHHHHhhcCc
Confidence            99999999989999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCeEEecCCChhHHHHHHh
Q 024529          240 ELWVVSEGKATPFHGTFHDYKKMLQ  264 (266)
Q Consensus       240 ~i~~l~~G~i~~~~g~~~~~~~~~~  264 (266)
                      .+|+.++|++..++|..++|.+...
T Consensus       548 E~Wvve~g~vt~ieg~~~~yKkl~~  572 (582)
T KOG0062|consen  548 ELWVVEDGKVTPIEGGIDKYKKLLG  572 (582)
T ss_pred             eeEEEcCCcEEeeeccHHHHHHHHH
Confidence            9999999999999999999876543

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=100.00  E-value=2.8e-45  Score=311.83  Aligned_cols=187  Identities=25%  Similarity=0.327  Sum_probs=154.3

Q ss_pred             EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------------ee
Q 024529           56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------VR  120 (266)
Q Consensus        56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------------~~  120 (266)
                      +++ ||+++|++ ..+  |+||+|++ |+++|+||||||||||+++|+|+++|++|+|.+++.               ..
T Consensus         2 ~~~-~l~~~~~~-~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~   76 (214)
T cd03297           2 LCV-DIEKRLPD-FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRK   76 (214)
T ss_pred             cee-eeeEecCC-eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhc
Confidence            445 99999964 434  99999999 999999999999999999999999999999987663               24


Q ss_pred             EEEEeccccCCCCCCCcHHHHHHHhCC----CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 024529          121 IAVFSQHHVDGLDLSSNPLLYMMRCFP----GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII  196 (266)
Q Consensus       121 i~~~~q~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll  196 (266)
                      ++|++|++..  ....+..+++.....    ....+++.++++.+++.. ..++++.+||||||||++|||||+.+|++|
T Consensus        77 i~~~~q~~~~--~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~~p~ll  153 (214)
T cd03297          77 IGLVFQQYAL--FPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDH-LLNRYPAQLSGGEKQRVALARALAAQPELL  153 (214)
T ss_pred             EEEEecCCcc--CCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHh-HhhcCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence            8999998632  222344444321111    112346788999999974 457888999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529          197 LLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKAT  250 (266)
Q Consensus       197 lLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~  250 (266)
                      ||||||+|||+.+++.+.+.+.+.    +.|||++|||.+++..+||++++|++|+++
T Consensus       154 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~  211 (214)
T cd03297         154 LLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQ  211 (214)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEE
Confidence            999999999999999988877643    579999999999999999999999999986

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9.4e-45  Score=315.97  Aligned_cols=202  Identities=19%  Similarity=0.249  Sum_probs=164.1

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC--C---CceEEEEcCe-----------
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ--P---SSGTVFRSAK-----------  118 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p---~~G~i~~~~~-----------  118 (266)
                      .|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++  |   ++|+|.+++.           
T Consensus         4 ~l~~~nl~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~   82 (252)
T PRK14256          4 KVKLEQLNVHFG-KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVS   82 (252)
T ss_pred             EEEEEEEEEEeC-CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHH
Confidence            589999999995 4569999999999999999999999999999999999986  4   6899987763           


Q ss_pred             --eeEEEEeccccCCCCCCCcHHHHHHH---hCCCC----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHHH
Q 024529          119 --VRIAVFSQHHVDGLDLSSNPLLYMMR---CFPGV----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAFA  186 (266)
Q Consensus       119 --~~i~~~~q~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv~lA  186 (266)
                        ..++|++|++..  ....+..+++..   .....    ..+++.++++.+++..   ...++++.+|||||+||++||
T Consensus        83 ~~~~i~~~~q~~~~--~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~la  160 (252)
T PRK14256         83 IRRRVGMVFQKPNP--FPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIA  160 (252)
T ss_pred             hhccEEEEecCCCC--CCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHH
Confidence              238999998532  222344443321   11111    1245677888898853   234567899999999999999


Q ss_pred             HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          187 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       187 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      |||+.+|++|||||||++||+.++..+.+.|.++  +.|||+||||++++..+||++++|++|+++ ..|+.+++.
T Consensus       161 ral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~  235 (252)
T PRK14256        161 RTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLV-ECGETKKIF  235 (252)
T ss_pred             HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEE-EeCCHHHHH
Confidence            9999999999999999999999999998888765  469999999999999999999999999996 567777653

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=100.00  E-value=9.3e-46  Score=351.43  Aligned_cols=201  Identities=20%  Similarity=0.257  Sum_probs=166.6

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------eeE
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI  121 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~i  121 (266)
                      ++|+++|++++|+ +..+|+|+||+|.+|++++|+||||||||||+|+|+|+++|++|+|.+++.            ..+
T Consensus         3 ~~i~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i   81 (501)
T PRK10762          3 ALLQLKGIDKAFP-GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI   81 (501)
T ss_pred             ceEEEeeeEEEeC-CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence            4799999999995 457999999999999999999999999999999999999999999998763            248


Q ss_pred             EEEeccccCCCCCCCcHHHHHHHhC------CCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHcc
Q 024529          122 AVFSQHHVDGLDLSSNPLLYMMRCF------PGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK  191 (266)
Q Consensus       122 ~~~~q~~~~~~~~~~~~~~~~~~~~------~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~  191 (266)
                      +|++|++.  +....++.+++....      ...    ..+++.++++.+++.+ ..++++.+|||||||||+|||||+.
T Consensus        82 ~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~la~al~~  158 (501)
T PRK10762         82 GIIHQELN--LIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRF-SSDKLVGELSIGEQQMVEIAKVLSF  158 (501)
T ss_pred             EEEEcchh--ccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCC-CccCchhhCCHHHHHHHHHHHHHhc
Confidence            99999853  222334544432210      111    1245778899999974 4578899999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529          192 KPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  259 (266)
Q Consensus       192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  259 (266)
                      +|++|||||||++||+.++.++.+.+.+   .+.|||+||||++++..+||++++|++|+++ ..|+.+++
T Consensus       159 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~-~~~~~~~~  228 (501)
T PRK10762        159 ESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFI-AEREVADL  228 (501)
T ss_pred             CCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEE-EecCcCcC
Confidence            9999999999999999999998877654   3569999999999999999999999999996 45665543

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.9e-45  Score=317.09  Aligned_cols=202  Identities=21%  Similarity=0.309  Sum_probs=162.1

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCC-----ceEEEEcCe-----------
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS-----SGTVFRSAK-----------  118 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~~~-----------  118 (266)
                      +|+++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|+     +|+|.+++.           
T Consensus         4 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~   82 (252)
T PRK14272          4 LLSAQDVNIYYG-DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVA   82 (252)
T ss_pred             EEEEeeeEEEEC-CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHH
Confidence            689999999995 457999999999999999999999999999999999999874     899987652           


Q ss_pred             --eeEEEEeccccCCCCCCCcHHHHHHHh--CCCC-c----HHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHHH
Q 024529          119 --VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGV-P----EQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAFA  186 (266)
Q Consensus       119 --~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~-~----~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv~lA  186 (266)
                        ..++|++|++..  ....+..+++...  .... .    .+.+.+.++.+++..   ...++++.+|||||+||++||
T Consensus        83 ~~~~i~~~~q~~~~--~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la  160 (252)
T PRK14272         83 MRRRVGMVFQKPNP--FPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIA  160 (252)
T ss_pred             hhceeEEEeccCcc--CcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHH
Confidence              258999998642  2223444444211  1111 1    123445566666531   234678899999999999999


Q ss_pred             HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          187 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       187 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      |||+.+|++|||||||++||+.++..+.+.|++.  +.|||++||+.+++..+||++++|++|+++ ..|+.+++.
T Consensus       161 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~  235 (252)
T PRK14272        161 RALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLV-EHGPTDQLF  235 (252)
T ss_pred             HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence            9999999999999999999999999998888764  479999999999999999999999999996 578877663

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.7e-45  Score=320.50  Aligned_cols=204  Identities=21%  Similarity=0.317  Sum_probs=169.6

Q ss_pred             cEEEEeeEEEcCCC---CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC-C----CceEEEEcCe--------
Q 024529           55 IISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-P----SSGTVFRSAK--------  118 (266)
Q Consensus        55 ~l~~~~l~~~y~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p----~~G~i~~~~~--------  118 (266)
                      +|+++||+..|...   ..+++||||+|++||++||+|.|||||||+.+.|+|+++ |    .+|+|.++++        
T Consensus         1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~   80 (316)
T COG0444           1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK   80 (316)
T ss_pred             CceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence            37899999999642   358999999999999999999999999999999999997 3    5789988774        


Q ss_pred             -------eeEEEEeccccCCCCCCCcHHHHHH---HhCCC-----CcHHHHHHHHHhcCCCcc--cccCCCCCCChHHHH
Q 024529          119 -------VRIAVFSQHHVDGLDLSSNPLLYMM---RCFPG-----VPEQKLRAHLGSFGVTGN--LALQPMYTLSGGQKS  181 (266)
Q Consensus       119 -------~~i~~~~q~~~~~~~~~~~~~~~~~---~~~~~-----~~~~~~~~~l~~~~l~~~--~~~~~~~~LSgGqkq  181 (266)
                             ..|+++||++...++...+.-..+.   .....     ...+++.++|+.+|+.+.  ..+.++.+|||||+|
T Consensus        81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQ  160 (316)
T COG0444          81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQ  160 (316)
T ss_pred             HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHH
Confidence                   2699999998766655544322221   11111     124578899999999864  567889999999999


Q ss_pred             HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChh
Q 024529          182 RVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFH  257 (266)
Q Consensus       182 Rv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~  257 (266)
                      ||.||.||+.+|++||.||||++||+..+.++++.|++    .+.++|+||||+..+..+||||+||..|+++ ..|+.+
T Consensus       161 RV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV-E~g~~~  239 (316)
T COG0444         161 RVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV-EEGPVE  239 (316)
T ss_pred             HHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE-EeCCHH
Confidence            99999999999999999999999999999988887754    4678999999999999999999999999997 467776


Q ss_pred             HH
Q 024529          258 DY  259 (266)
Q Consensus       258 ~~  259 (266)
                      ++
T Consensus       240 ~i  241 (316)
T COG0444         240 EI  241 (316)
T ss_pred             HH
Confidence            65

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=100.00  E-value=9.3e-45  Score=350.29  Aligned_cols=202  Identities=24%  Similarity=0.359  Sum_probs=170.2

Q ss_pred             cEEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEE
Q 024529           55 IISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA  122 (266)
Q Consensus        55 ~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~  122 (266)
                      .++++|++|+|+++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++.           ..++
T Consensus       341 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~  420 (582)
T PRK11176        341 DIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVA  420 (582)
T ss_pred             eEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhce
Confidence            59999999999753 57999999999999999999999999999999999999999999999874           3589


Q ss_pred             EEeccccCCCCCCCcHHHHHHHhCC-CCcHHHHHHHHHhcCCCccccc----------CCCCCCChHHHHHHHHHHHHcc
Q 024529          123 VFSQHHVDGLDLSSNPLLYMMRCFP-GVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKITFK  191 (266)
Q Consensus       123 ~~~q~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqRv~lAral~~  191 (266)
                      |++|++..   +..+..+++....+ ..+++++.++++.+++.+....          .....||||||||++|||||++
T Consensus       421 ~v~Q~~~l---f~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~  497 (582)
T PRK11176        421 LVSQNVHL---FNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLR  497 (582)
T ss_pred             EEccCcee---ecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHh
Confidence            99999742   34566666643322 3567888888888886543221          2235799999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          192 KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      +|++||||||||+||+.+...+++.+.+.  +.|+|+|||+++.+. .||+|++|++|+++ ..|+.+++.+
T Consensus       498 ~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~-~~D~Ii~l~~g~i~-e~g~~~~l~~  567 (582)
T PRK11176        498 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-KADEILVVEDGEIV-ERGTHAELLA  567 (582)
T ss_pred             CCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEE-EeCCHHHHHh
Confidence            99999999999999999999999998775  479999999998876 59999999999997 5788777643

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.9e-45  Score=321.74  Aligned_cols=204  Identities=23%  Similarity=0.272  Sum_probs=165.9

Q ss_pred             CCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC-----CCceEEEEcCe--------
Q 024529           52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK--------  118 (266)
Q Consensus        52 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~--------  118 (266)
                      +.++|+++|+++.|+ +..+|+|+||+|++|++++|+||||||||||+++|+|+.+     |++|+|.+++.        
T Consensus        36 ~~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~  114 (286)
T PRK14275         36 GKPHVVAKNFSIYYG-EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD  114 (286)
T ss_pred             CceEEEEeeeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence            456899999999995 4568999999999999999999999999999999999864     49999988652        


Q ss_pred             -----eeEEEEeccccCCCCCCCcHHHHHHHh--CCCC-----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHH
Q 024529          119 -----VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGV-----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRV  183 (266)
Q Consensus       119 -----~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv  183 (266)
                           ..++|++|++.. +.  .+..+++...  ....     ..+.+.++++.+++..   ...++++.+|||||+||+
T Consensus       115 ~~~~~~~i~~v~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv  191 (286)
T PRK14275        115 EVLLRKKIGMVFQKPNP-FP--KSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRL  191 (286)
T ss_pred             hHHhhhcEEEECCCCCC-Cc--cCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHH
Confidence                 258999998632 11  2555444311  1111     1234567788888741   234678899999999999


Q ss_pred             HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          184 AFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       184 ~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      +|||||+.+|++|||||||++||+.++..+.+.|.++  +.|||++|||.+++..+||++++|++|+++ ..|+.+++.
T Consensus       192 ~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~-~~g~~~~~~  269 (286)
T PRK14275        192 CVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLV-EHAPTAQLF  269 (286)
T ss_pred             HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence            9999999999999999999999999999999888765  358999999999999999999999999996 578877654

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=100.00  E-value=3.6e-45  Score=348.89  Aligned_cols=208  Identities=25%  Similarity=0.370  Sum_probs=170.5

Q ss_pred             CCCcEEEEeeEEEcCC----CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEc-Ce--------
Q 024529           52 GPPIISFSDASFGYPG----GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS-AK--------  118 (266)
Q Consensus        52 ~~~~l~~~~l~~~y~~----~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~-~~--------  118 (266)
                      +.++|+++|+++.|++    ...+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++ +.        
T Consensus       276 ~~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~  355 (520)
T TIGR03269       276 GEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKP  355 (520)
T ss_pred             CCceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCcccccccc
Confidence            3568999999999952    2468999999999999999999999999999999999999999999884 21        


Q ss_pred             ---------eeEEEEeccccCCCCCCCcHHHHHHHh--C--CC-CcHHHHHHHHHhcCCCcc----cccCCCCCCChHHH
Q 024529          119 ---------VRIAVFSQHHVDGLDLSSNPLLYMMRC--F--PG-VPEQKLRAHLGSFGVTGN----LALQPMYTLSGGQK  180 (266)
Q Consensus       119 ---------~~i~~~~q~~~~~~~~~~~~~~~~~~~--~--~~-~~~~~~~~~l~~~~l~~~----~~~~~~~~LSgGqk  180 (266)
                               ..++|++|++.  +....+..+++...  .  .. ...+++.++++.+++...    ..++++.+||||||
T Consensus       356 ~~~~~~~~~~~i~~v~q~~~--l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~  433 (520)
T TIGR03269       356 GPDGRGRAKRYIGILHQEYD--LYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGER  433 (520)
T ss_pred             chhhHHHHhhhEEEEccCcc--cCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHH
Confidence                     24899999853  22233444444321  1  11 123457788999999641    45789999999999


Q ss_pred             HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCCh
Q 024529          181 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTF  256 (266)
Q Consensus       181 qRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~  256 (266)
                      |||+|||||+.+|+||||||||++||+.++..+++.|.+    .+.|||+||||++++..+||++++|++|+++ ..|++
T Consensus       434 qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~-~~g~~  512 (520)
T TIGR03269       434 HRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIV-KIGDP  512 (520)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCH
Confidence            999999999999999999999999999999999888753    3679999999999999999999999999996 67888


Q ss_pred             hHHHHH
Q 024529          257 HDYKKM  262 (266)
Q Consensus       257 ~~~~~~  262 (266)
                      +++.+.
T Consensus       513 ~~~~~~  518 (520)
T TIGR03269       513 EEIVEE  518 (520)
T ss_pred             HHHHhh
Confidence            877554

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=100.00  E-value=1.7e-44  Score=349.14  Aligned_cols=201  Identities=23%  Similarity=0.369  Sum_probs=171.4

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEE
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA  122 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~  122 (266)
                      ..++++|++|.|++++.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+++.           ..++
T Consensus       339 ~~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~  418 (592)
T PRK10790        339 GRIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVA  418 (592)
T ss_pred             CeEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheE
Confidence            35999999999975567999999999999999999999999999999999999999999999874           3599


Q ss_pred             EEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc----------CCCCCCChHHHHHHHHHHHHccC
Q 024529          123 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKITFKK  192 (266)
Q Consensus       123 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqRv~lAral~~~  192 (266)
                      |++|++..   +..+..+++.... ..+++++.++++.+|+.+....          .....||||||||++|||||+.+
T Consensus       419 ~v~Q~~~l---F~~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~  494 (592)
T PRK10790        419 MVQQDPVV---LADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQT  494 (592)
T ss_pred             EEccCCcc---ccchHHHHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhC
Confidence            99999752   3446666665433 4567888899998887643221          23467999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          193 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       193 p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      |+||||||||++||+.+.+.+.+.+.+.  ++|+|+|||+++.+. .||+|++|++|+++ ..|+.+++.
T Consensus       495 ~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~-~~D~ii~l~~G~i~-~~G~~~~L~  562 (592)
T PRK10790        495 PQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIV-EADTILVLHRGQAV-EQGTHQQLL  562 (592)
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEE-EEcCHHHHH
Confidence            9999999999999999999999988765  579999999999887 59999999999997 578888764

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=100.00  E-value=7e-45  Score=314.10  Aligned_cols=200  Identities=26%  Similarity=0.408  Sum_probs=157.7

Q ss_pred             EEEEeeEEEcCC--CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEE
Q 024529           56 ISFSDASFGYPG--GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA  122 (266)
Q Consensus        56 l~~~~l~~~y~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~  122 (266)
                      ++++|+++.|++  +..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.           ..++
T Consensus         1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~   80 (238)
T cd03249           1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG   80 (238)
T ss_pred             CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence            478999999964  246899999999999999999999999999999999999999999998773           2489


Q ss_pred             EEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhc-----------CCCcccccCCCCCCChHHHHHHHHHHHHcc
Q 024529          123 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSF-----------GVTGNLALQPMYTLSGGQKSRVAFAKITFK  191 (266)
Q Consensus       123 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~LSgGqkqRv~lAral~~  191 (266)
                      |++|++.. +  ..+..+++..........++.+.++.+           ++.. ..++++.+|||||+||++|||||+.
T Consensus        81 ~~~q~~~~-~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~LS~G~~qrv~la~al~~  156 (238)
T cd03249          81 LVSQEPVL-F--DGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDT-LVGERGSQLSGGQKQRIAIARALLR  156 (238)
T ss_pred             EECCchhh-h--hhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccce-eeccCCccCCHHHHHHHHHHHHHhc
Confidence            99998632 1  124444443211111222333333333           3322 2356678999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          192 KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      +|++|||||||++||+.++..+.+.|.+.  +.|||++||+++++. +||++++|++|+++ +.|+.+++..
T Consensus       157 ~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~-~~d~v~~l~~G~i~-~~~~~~~~~~  226 (238)
T cd03249         157 NPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR-NADLIAVLQNGQVV-EQGTHDELMA  226 (238)
T ss_pred             CCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh-hCCEEEEEECCEEE-EeCCHHHHhh
Confidence            99999999999999999999998888654  468999999999997 89999999999996 6788777643

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=100.00  E-value=1e-44  Score=315.61  Aligned_cols=201  Identities=22%  Similarity=0.379  Sum_probs=161.1

Q ss_pred             CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCC--CCCCceEEEEcCee-----------
Q 024529           53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE--LQPSSGTVFRSAKV-----------  119 (266)
Q Consensus        53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~~~~-----------  119 (266)
                      +++|+++|+++.|+ +..+|+++||+|++||+++|+|+||||||||+++|+|+  ++|++|+|.+++..           
T Consensus         5 ~~~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~   83 (252)
T CHL00131          5 KPILEIKNLHASVN-ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH   83 (252)
T ss_pred             CceEEEEeEEEEeC-CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence            45799999999995 45699999999999999999999999999999999998  58999999886631           


Q ss_pred             -eEEEEeccccCCCCCCCcHHHHHHHhC---------CCCc----HHHHHHHHHhcCCCcccccCCCC-CCChHHHHHHH
Q 024529          120 -RIAVFSQHHVDGLDLSSNPLLYMMRCF---------PGVP----EQKLRAHLGSFGVTGNLALQPMY-TLSGGQKSRVA  184 (266)
Q Consensus       120 -~i~~~~q~~~~~~~~~~~~~~~~~~~~---------~~~~----~~~~~~~l~~~~l~~~~~~~~~~-~LSgGqkqRv~  184 (266)
                       .++|++|++...  ...+...++....         ....    .+++.++++.+++.+...++++. .|||||+||++
T Consensus        84 ~~~~~~~q~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~  161 (252)
T CHL00131         84 LGIFLAFQYPIEI--PGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNE  161 (252)
T ss_pred             eeEEEEecccccc--ccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHH
Confidence             367888875321  1122222221100         0011    24567789999996434556776 59999999999


Q ss_pred             HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhh-cCEEEEEeCCeEEecCCChh
Q 024529          185 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGS-VEELWVVSEGKATPFHGTFH  257 (266)
Q Consensus       185 lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~-~d~i~~l~~G~i~~~~g~~~  257 (266)
                      |||||+.+|++|||||||++||+.++..+.+.|.+.   +.|||++|||++++..+ ||++++|++|+++ +.|+++
T Consensus       162 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~-~~~~~~  237 (252)
T CHL00131        162 ILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKII-KTGDAE  237 (252)
T ss_pred             HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEE-EecChh
Confidence            999999999999999999999999999998888654   57999999999999876 8999999999996 678776

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.8e-45  Score=348.50  Aligned_cols=201  Identities=18%  Similarity=0.245  Sum_probs=167.2

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC--CceEEEEcCe------------e
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP--SSGTVFRSAK------------V  119 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~~~------------~  119 (266)
                      ++|+++|++++|+ +..+|+|+||+|++|++++|+||||||||||+|+|+|+++|  ++|+|.+++.            .
T Consensus         4 ~~l~~~nl~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~   82 (506)
T PRK13549          4 YLLEMKNITKTFG-GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA   82 (506)
T ss_pred             ceEEEeeeEEEeC-CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence            5799999999995 45799999999999999999999999999999999999996  8999998763            2


Q ss_pred             eEEEEeccccCCCCCCCcHHHHHHHhC-----CCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 024529          120 RIAVFSQHHVDGLDLSSNPLLYMMRCF-----PGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF  190 (266)
Q Consensus       120 ~i~~~~q~~~~~~~~~~~~~~~~~~~~-----~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~  190 (266)
                      .++|++|++.  +....+..+++....     ...    ..+++.++++.+++.+ ..++++.+||||||||++|||||+
T Consensus        83 ~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqrv~la~al~  159 (506)
T PRK13549         83 GIAIIHQELA--LVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDI-NPATPVGNLGLGQQQLVEIAKALN  159 (506)
T ss_pred             CeEEEEeccc--cCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCC-CcccchhhCCHHHHHHHHHHHHHh
Confidence            4899999863  222334444432110     011    1245788999999964 567899999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529          191 KKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  259 (266)
Q Consensus       191 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  259 (266)
                      .+|++|||||||++||+.++..+.+.|.++   +.|||+||||++++..+||++++|++|+++ +.|+.+++
T Consensus       160 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~  230 (506)
T PRK13549        160 KQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHI-GTRPAAGM  230 (506)
T ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEe-eecccccC
Confidence            999999999999999999999988877653   569999999999999999999999999986 56766544

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=100.00  E-value=8e-45  Score=312.87  Aligned_cols=200  Identities=25%  Similarity=0.453  Sum_probs=160.1

Q ss_pred             EEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEEE
Q 024529           56 ISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV  123 (266)
Q Consensus        56 l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~  123 (266)
                      |+++|+++.|++. ..+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+++.           ..++|
T Consensus         1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~   80 (234)
T cd03251           1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL   80 (234)
T ss_pred             CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence            4789999999543 26899999999999999999999999999999999999999999998763           24899


Q ss_pred             EeccccCCCCCCCcHHHHHHHhCCCCcHHHH---------HHHHHhc--CCCcccccCCCCCCChHHHHHHHHHHHHccC
Q 024529          124 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKL---------RAHLGSF--GVTGNLALQPMYTLSGGQKSRVAFAKITFKK  192 (266)
Q Consensus       124 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~~--~l~~~~~~~~~~~LSgGqkqRv~lAral~~~  192 (266)
                      ++|++.. +  ..+..+++...........+         .+.++.+  ++.. ..++++.+|||||+||++|||||+.+
T Consensus        81 ~~q~~~~-~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~~  156 (234)
T cd03251          81 VSQDVFL-F--NDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDT-VIGERGVKLSGGQRQRIAIARALLKD  156 (234)
T ss_pred             eCCCCee-c--cccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcce-eeccCCCcCCHHHHHHHHHHHHHhcC
Confidence            9998632 1  23455544322111122222         2334444  4443 34567899999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          193 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       193 p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      |++|||||||++||+.++..+.+.|.+.  +.|||++|||++++.. ||++++|++|+++ ..|+.+++..
T Consensus       157 p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~v~~l~~G~i~-~~~~~~~~~~  225 (234)
T cd03251         157 PPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN-ADRIVVLEDGKIV-ERGTHEELLA  225 (234)
T ss_pred             CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh-CCEEEEecCCeEe-eeCCHHHHHH
Confidence            9999999999999999999998888764  5699999999999976 9999999999996 5788877754

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=100.00  E-value=3.3e-45  Score=333.32  Aligned_cols=194  Identities=22%  Similarity=0.254  Sum_probs=160.3

Q ss_pred             eeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------------eeEEEE
Q 024529           60 DASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------VRIAVF  124 (266)
Q Consensus        60 ~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------------~~i~~~  124 (266)
                      |++++|+ +.. + ++||+|++||+++|+|||||||||||++|+|+++|++|+|.+++.               ..++|+
T Consensus         4 ~l~~~~~-~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v   80 (354)
T TIGR02142         4 RFSKRLG-DFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV   80 (354)
T ss_pred             EEEEEEC-CEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEE
Confidence            8999995 333 4 999999999999999999999999999999999999999987653               248999


Q ss_pred             eccccCCCCCCCcHHHHHHHhCC--C--CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 024529          125 SQHHVDGLDLSSNPLLYMMRCFP--G--VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE  200 (266)
Q Consensus       125 ~q~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDE  200 (266)
                      +|++..  ....+..+++.....  .  ...+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++|||||
T Consensus        81 ~q~~~l--~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDE  157 (354)
T TIGR02142        81 FQEARL--FPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGH-LLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDE  157 (354)
T ss_pred             ecCCcc--CCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChh-HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence            998632  222344444322111  1  11345788999999974 5678899999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          201 PSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       201 Pt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      ||++||+.++..+.+.|++.    +.|||+||||++++..+||++++|++|+++ ..|+.+++.
T Consensus       158 Pts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~  220 (354)
T TIGR02142       158 PLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVA-AAGPIAEVW  220 (354)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEE-EECCHHHHh
Confidence            99999999999888877653    569999999999999999999999999996 568877764

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.3e-44  Score=319.31  Aligned_cols=203  Identities=24%  Similarity=0.317  Sum_probs=166.1

Q ss_pred             CcEEEEeeEEEcCCC--CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------ee
Q 024529           54 PIISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR  120 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~  120 (266)
                      ++|+++|++++|++.  ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+++.           ..
T Consensus         3 ~~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~   82 (277)
T PRK13642          3 KILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK   82 (277)
T ss_pred             ceEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcc
Confidence            379999999999632  35899999999999999999999999999999999999999999998763           24


Q ss_pred             EEEEeccccCCCCCCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 024529          121 IAVFSQHHVDGLDLSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH  194 (266)
Q Consensus       121 i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~  194 (266)
                      ++|++|++... ....+..+++..  ......    .+++.++++.+++.+ ..++++.+|||||+||++|||||+.+|+
T Consensus        83 i~~v~q~~~~~-~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~lAraL~~~p~  160 (277)
T PRK13642         83 IGMVFQNPDNQ-FVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLD-FKTREPARLSGGQKQRVAVAGIIALRPE  160 (277)
T ss_pred             eEEEEECHHHh-hccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHh-HhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence            89999985211 112234444321  111111    245678899999964 5678899999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          195 IILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       195 lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      +|||||||++||+.++..+.+.+.+.    +.|||++|||++++. .||++++|++|+++ ..|+.+++.
T Consensus       161 llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~~~  228 (277)
T PRK13642        161 IIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMKAGEII-KEAAPSELF  228 (277)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEE-EeCCHHHHh
Confidence            99999999999999999988877543    679999999999997 69999999999996 568877764

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=100.00  E-value=1.1e-44  Score=312.28  Aligned_cols=200  Identities=27%  Similarity=0.422  Sum_probs=158.4

Q ss_pred             EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEEEE
Q 024529           56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAVF  124 (266)
Q Consensus        56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~~  124 (266)
                      |+++|++++|+++..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.           ..++|+
T Consensus         1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~   80 (236)
T cd03253           1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVV   80 (236)
T ss_pred             CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEE
Confidence            478999999964456899999999999999999999999999999999999999999998773           248999


Q ss_pred             eccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCc----------ccccCCCCCCChHHHHHHHHHHHHccCCC
Q 024529          125 SQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTG----------NLALQPMYTLSGGQKSRVAFAKITFKKPH  194 (266)
Q Consensus       125 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkqRv~lAral~~~p~  194 (266)
                      +|++.. +  ..+..+++...........+...++.+++.+          ...++++.+|||||+||++|||||+.+|+
T Consensus        81 ~q~~~~-~--~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~  157 (236)
T cd03253          81 PQDTVL-F--NDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPP  157 (236)
T ss_pred             CCCChh-h--cchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence            998632 1  2345554432211222333333333333321          12345678999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          195 IILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       195 lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      +|||||||++||+.++..+.+.|.+.  +.|||++||+.+++.. ||++++|++|+++ ..|+.+++.
T Consensus       158 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~-~d~~~~l~~g~i~-~~~~~~~~~  223 (236)
T cd03253         158 ILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN-ADKIIVLKDGRIV-ERGTHEELL  223 (236)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh-CCEEEEEECCEEE-eeCCHHHHh
Confidence            99999999999999999988888654  5699999999999975 9999999999996 567777664

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-44  Score=318.73  Aligned_cols=205  Identities=20%  Similarity=0.261  Sum_probs=165.5

Q ss_pred             CCCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC-----CceEEEEcCe-------
Q 024529           51 PGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK-------  118 (266)
Q Consensus        51 ~~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~-------  118 (266)
                      +..++|+++|+++.|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|     ++|+|.+++.       
T Consensus        16 ~~~~~l~~~nl~~~~~-~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~   94 (274)
T PRK14265         16 PDHSVFEVEGVKVFYG-GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQI   94 (274)
T ss_pred             CCCceEEEeeEEEEeC-CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccc
Confidence            3456899999999995 45699999999999999999999999999999999999863     6899987652       


Q ss_pred             ------eeEEEEeccccCCCCCCCcHHHHHHHh--CCC---CcHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHH
Q 024529          119 ------VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPG---VPEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVA  184 (266)
Q Consensus       119 ------~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv~  184 (266)
                            ..++|++|++.. +.  .+..+++...  ...   ...+.+.++++.+++..   ...++++.+|||||+|||+
T Consensus        95 ~~~~~~~~i~~v~q~~~l-~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~  171 (274)
T PRK14265         95 NSVKLRRQVGMVFQRPNP-FP--KSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLC  171 (274)
T ss_pred             hhHHHhhcEEEEccCCcc-cc--ccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHH
Confidence                  258999998632 11  2444443221  111   12334566777777631   2346788999999999999


Q ss_pred             HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEe---------CCeEEecC
Q 024529          185 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVS---------EGKATPFH  253 (266)
Q Consensus       185 lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~---------~G~i~~~~  253 (266)
                      |||||+.+|++|||||||++||+.++..+.+.|.++  +.|||++|||++++..+||++++|+         +|+++ ..
T Consensus       172 LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~-~~  250 (274)
T PRK14265        172 IARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLV-EF  250 (274)
T ss_pred             HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEE-Ee
Confidence            999999999999999999999999999999988765  4689999999999999999999997         79997 56


Q ss_pred             CChhHHH
Q 024529          254 GTFHDYK  260 (266)
Q Consensus       254 g~~~~~~  260 (266)
                      |+.+++.
T Consensus       251 g~~~~~~  257 (274)
T PRK14265        251 SPTEQMF  257 (274)
T ss_pred             CCHHHHH
Confidence            8887764

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=100.00  E-value=1.3e-44  Score=312.13  Aligned_cols=199  Identities=26%  Similarity=0.322  Sum_probs=164.9

Q ss_pred             EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------eeEEEEec
Q 024529           56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFSQ  126 (266)
Q Consensus        56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~i~~~~q  126 (266)
                      |+++|+++.|+ +. +|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|++++.         ..++|++|
T Consensus         1 l~~~~l~~~~~-~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q   78 (235)
T cd03299           1 LKVENLSKDWK-EF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQ   78 (235)
T ss_pred             CeeEeEEEEeC-Cc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEee
Confidence            46899999995 33 799999999999999999999999999999999999999999998763         25899999


Q ss_pred             cccCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 024529          127 HHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE  200 (266)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDE  200 (266)
                      ++..  ....+..+++...  ....    ..+++.++++.+++.+ ..++++.+|||||+||++|||||+.+|++++|||
T Consensus        79 ~~~~--~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~laral~~~p~llllDE  155 (235)
T cd03299          79 NYAL--FPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDH-LLNRKPETLSGGEQQRVAIARALVVNPKILLLDE  155 (235)
T ss_pred             cCcc--CCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-HHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECC
Confidence            8532  2222344333211  1111    2345678899999974 5678889999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          201 PSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       201 Pt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      ||++||+.++..+.+.+.+.    +.|||++||+++++..+||++++|++|+++ ..|+.+++.
T Consensus       156 Pt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~  218 (235)
T cd03299         156 PFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLI-QVGKPEEVF  218 (235)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EecCHHHHH
Confidence            99999999999998887653    579999999999999999999999999997 567776654

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=100.00  E-value=2.4e-45  Score=304.46  Aligned_cols=173  Identities=33%  Similarity=0.562  Sum_probs=143.0

Q ss_pred             EEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCC
Q 024529           57 SFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSS  136 (266)
Q Consensus        57 ~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~  136 (266)
                      +++|+++.|++ ..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++...         ...    
T Consensus         1 ~~~~l~~~~~~-~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~---------~~~----   66 (180)
T cd03214           1 EVENLSVGYGG-RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDL---------ASL----   66 (180)
T ss_pred             CeeEEEEEECC-eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC---------CcC----
Confidence            47899999954 5699999999999999999999999999999999999999999998776310         000    


Q ss_pred             cHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH
Q 024529          137 NPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQG  216 (266)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~  216 (266)
                      .... .....     ..+.++++.+++.+ ..++++.+|||||+||++|||||+.+|+++||||||++||+.++..+.+.
T Consensus        67 ~~~~-~~~~i-----~~~~q~l~~~gl~~-~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~  139 (180)
T cd03214          67 SPKE-LARKI-----AYVPQALELLGLAH-LADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLEL  139 (180)
T ss_pred             CHHH-HHHHH-----hHHHHHHHHcCCHh-HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH
Confidence            0100 00000     01112788899974 45678899999999999999999999999999999999999999988887


Q ss_pred             Hhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529          217 LVLF----QGGILMVSHDEHLISGSVEELWVVSEGKAT  250 (266)
Q Consensus       217 l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~  250 (266)
                      +.+.    +.|+|++||+++++..+||++++|++|++.
T Consensus       140 l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~  177 (180)
T cd03214         140 LRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIV  177 (180)
T ss_pred             HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence            7653    569999999999998999999999999986

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-44  Score=316.61  Aligned_cols=204  Identities=19%  Similarity=0.261  Sum_probs=165.2

Q ss_pred             CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcC---------------
Q 024529           53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA---------------  117 (266)
Q Consensus        53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~---------------  117 (266)
                      .++|.++|++++|+ ++.+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|               
T Consensus         8 ~~~i~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~   86 (257)
T PRK14246          8 EDVFNISRLYLYIN-DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI   86 (257)
T ss_pred             hhheeeeeEEEecC-CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence            46899999999995 56799999999999999999999999999999999999999997765443               


Q ss_pred             --eeeEEEEeccccCCCCCCCcHHHHHHHh---CCCCc----HHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHH
Q 024529          118 --KVRIAVFSQHHVDGLDLSSNPLLYMMRC---FPGVP----EQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAF  185 (266)
Q Consensus       118 --~~~i~~~~q~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv~l  185 (266)
                        +..++|++|++..  ....+..+++...   .....    ...+.++++.+++..   ...++++..|||||+||++|
T Consensus        87 ~~~~~i~~~~q~~~~--~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~l  164 (257)
T PRK14246         87 KLRKEVGMVFQQPNP--FPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTI  164 (257)
T ss_pred             HHhcceEEEccCCcc--CCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHH
Confidence              1348999998642  2222343333211   11111    234677888899852   23467889999999999999


Q ss_pred             HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          186 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       186 Aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      ||||+.+|+++||||||++||+.++..+.+.|.++  +.|||+|||+++++..+||++++|++|+++ ..|+.+++.
T Consensus       165 aral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~-~~g~~~~~~  240 (257)
T PRK14246        165 ARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELV-EWGSSNEIF  240 (257)
T ss_pred             HHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEE-EECCHHHHH
Confidence            99999999999999999999999999998888764  369999999999999999999999999997 567777664

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=5.3e-45  Score=308.07  Aligned_cols=186  Identities=22%  Similarity=0.383  Sum_probs=155.6

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee----------eEEEE
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV----------RIAVF  124 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~----------~i~~~  124 (266)
                      +|+++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++..          .++|+
T Consensus         1 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~   79 (204)
T PRK13538          1 MLEARNLACERD-ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYL   79 (204)
T ss_pred             CeEEEEEEEEEC-CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEe
Confidence            589999999995 4568999999999999999999999999999999999999999999987642          48888


Q ss_pred             eccccCCCCCCCcHHHHHHH---hCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 024529          125 SQHHVDGLDLSSNPLLYMMR---CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP  201 (266)
Q Consensus       125 ~q~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEP  201 (266)
                      +|.+.  +....+..+++..   .......+++.++++.+++.+ ..++++.+|||||+||++|||||+.+|++||||||
T Consensus        80 ~~~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP  156 (204)
T PRK13538         80 GHQPG--IKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAG-FEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEP  156 (204)
T ss_pred             CCccc--cCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHH-HhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            88753  2222344444321   111134567888999999964 45788999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEE
Q 024529          202 SNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVV  244 (266)
Q Consensus       202 t~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l  244 (266)
                      |++||+.++..+.+.|+++   +.|||++|||.+++..+.+|++++
T Consensus       157 t~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~  202 (204)
T PRK13538        157 FTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL  202 (204)
T ss_pred             CccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence            9999999999998888754   579999999999999877888776

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=100.00  E-value=3.8e-45  Score=349.36  Aligned_cols=207  Identities=25%  Similarity=0.375  Sum_probs=168.6

Q ss_pred             CCCcEEEEeeEEEcCC----------CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---
Q 024529           52 GPPIISFSDASFGYPG----------GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---  118 (266)
Q Consensus        52 ~~~~l~~~~l~~~y~~----------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---  118 (266)
                      +.++|+++|+++.|+.          ++.+|+++||+|++||+++|+||||||||||+|+|+|++ |++|+|++++.   
T Consensus       272 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~  350 (529)
T PRK15134        272 ASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLH  350 (529)
T ss_pred             CCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEcc
Confidence            3568999999999952          346899999999999999999999999999999999998 48999998762   


Q ss_pred             -----------eeEEEEeccccCCCCCCCcHHHHHHH---hCC-CC----cHHHHHHHHHhcCCCcccccCCCCCCChHH
Q 024529          119 -----------VRIAVFSQHHVDGLDLSSNPLLYMMR---CFP-GV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQ  179 (266)
Q Consensus       119 -----------~~i~~~~q~~~~~~~~~~~~~~~~~~---~~~-~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq  179 (266)
                                 ..++|++|++...+....++.+++..   ... ..    ..+++.++++.+++.....++++.+|||||
T Consensus       351 ~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~  430 (529)
T PRK15134        351 NLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQ  430 (529)
T ss_pred             ccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHH
Confidence                       24899999862122222344443321   110 01    234677899999996334678999999999


Q ss_pred             HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCC
Q 024529          180 KSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGT  255 (266)
Q Consensus       180 kqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~  255 (266)
                      ||||+|||||+.+|++|||||||++||+.++..+++.|.+    .+.|||+||||++++..+||++++|++|+++ ..|+
T Consensus       431 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~-~~~~  509 (529)
T PRK15134        431 RQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVV-EQGD  509 (529)
T ss_pred             HHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEE-EEcC
Confidence            9999999999999999999999999999999999888764    3579999999999999999999999999996 5687


Q ss_pred             hhHHH
Q 024529          256 FHDYK  260 (266)
Q Consensus       256 ~~~~~  260 (266)
                      .+++.
T Consensus       510 ~~~~~  514 (529)
T PRK15134        510 CERVF  514 (529)
T ss_pred             HHHHh
Confidence            77653

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=100.00  E-value=7.8e-45  Score=311.07  Aligned_cols=189  Identities=24%  Similarity=0.330  Sum_probs=154.5

Q ss_pred             cEEEEeeEEEcCC------CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEc--C---e-----
Q 024529           55 IISFSDASFGYPG------GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS--A---K-----  118 (266)
Q Consensus        55 ~l~~~~l~~~y~~------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~--~---~-----  118 (266)
                      ||+++|+++.|++      ...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++  +   .     
T Consensus         1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~   80 (224)
T TIGR02324         1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS   80 (224)
T ss_pred             CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence            5889999999952      1368999999999999999999999999999999999999999999886  2   1     


Q ss_pred             ---------eeEEEEeccccCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHH
Q 024529          119 ---------VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRV  183 (266)
Q Consensus       119 ---------~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv  183 (266)
                               ..++|++|++..  ....+..+++..  .....    ..+++.++++.+++.+...++++.+|||||+||+
T Consensus        81 ~~~~~~~~~~~i~~~~q~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl  158 (224)
T TIGR02324        81 PREVLEVRRKTIGYVSQFLRV--IPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRV  158 (224)
T ss_pred             HHHHHHHHhcceEEEeccccc--CCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHH
Confidence                     248999998632  222233333221  11111    2346778899999975445678999999999999


Q ss_pred             HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEe
Q 024529          184 AFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVS  245 (266)
Q Consensus       184 ~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~  245 (266)
                      +|||||+.+|++|||||||++||+.++..+.+.|.+.   +.|||+|||+.+++..+||+++.+.
T Consensus       159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~~  223 (224)
T TIGR02324       159 NIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDVT  223 (224)
T ss_pred             HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEecC
Confidence            9999999999999999999999999999998887653   5699999999999999999998764

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.6e-44  Score=318.65  Aligned_cols=204  Identities=20%  Similarity=0.335  Sum_probs=166.3

Q ss_pred             CCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC-----CceEEEEcCe--------
Q 024529           52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK--------  118 (266)
Q Consensus        52 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~--------  118 (266)
                      ..++|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.+++.        
T Consensus        18 ~~~~l~i~nl~~~~~-~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~   96 (276)
T PRK14271         18 AAPAMAAVNLTLGFA-GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDV   96 (276)
T ss_pred             cCcEEEEeeEEEEEC-CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchh
Confidence            356899999999995 46799999999999999999999999999999999999985     6999988763        


Q ss_pred             ----eeEEEEeccccCCCCCCCcHHHHHHHh---CCCCcH----HHHHHHHHhcCCCcc---cccCCCCCCChHHHHHHH
Q 024529          119 ----VRIAVFSQHHVDGLDLSSNPLLYMMRC---FPGVPE----QKLRAHLGSFGVTGN---LALQPMYTLSGGQKSRVA  184 (266)
Q Consensus       119 ----~~i~~~~q~~~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqRv~  184 (266)
                          ..++|++|++.. +.  .+...++...   ......    ..+.++++.+++...   ..++.+.+|||||+||++
T Consensus        97 ~~~~~~i~~v~q~~~l-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~  173 (276)
T PRK14271         97 LEFRRRVGMLFQRPNP-FP--MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLC  173 (276)
T ss_pred             HHHhhheEEeccCCcc-CC--ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHH
Confidence                248999998632 22  3444443211   111122    234567888888532   245778999999999999


Q ss_pred             HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          185 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       185 lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      |||||+.+|++|||||||++||+.++..+.+.|.+.  ..|||+||||++++..+||++++|++|+++ ..|+.+++.
T Consensus       174 LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~-~~g~~~~~~  250 (276)
T PRK14271        174 LARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLV-EEGPTEQLF  250 (276)
T ss_pred             HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence            999999999999999999999999999998888764  469999999999999999999999999996 568877764

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=100.00  E-value=8.5e-45  Score=297.46  Aligned_cols=164  Identities=26%  Similarity=0.377  Sum_probs=142.9

Q ss_pred             EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCC
Q 024529           56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLS  135 (266)
Q Consensus        56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~  135 (266)
                      |+++|+++.|++++.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+.+...++|++|++..  . .
T Consensus         1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~--~-~   77 (166)
T cd03223           1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYL--P-L   77 (166)
T ss_pred             CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCcc--c-c
Confidence            478999999964456999999999999999999999999999999999999999999999888889999998631  1 2


Q ss_pred             CcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH
Q 024529          136 SNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ  215 (266)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~  215 (266)
                      .+..+++..                 .        ++.+||||||||++|||||+.+|++|||||||++||+.++..+.+
T Consensus        78 ~tv~~nl~~-----------------~--------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~  132 (166)
T cd03223          78 GTLREQLIY-----------------P--------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQ  132 (166)
T ss_pred             ccHHHHhhc-----------------c--------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHH
Confidence            233333211                 0        357999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCEEEEEecCHHHHHhhcCEEEEEeCCe
Q 024529          216 GLVLFQGGILMVSHDEHLISGSVEELWVVSEGK  248 (266)
Q Consensus       216 ~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~G~  248 (266)
                      .+.+.+.|+|++|||.++. .+||++++|+++.
T Consensus       133 ~l~~~~~tiiivsh~~~~~-~~~d~i~~l~~~~  164 (166)
T cd03223         133 LLKELGITVISVGHRPSLW-KFHDRVLDLDGEG  164 (166)
T ss_pred             HHHHhCCEEEEEeCChhHH-hhCCEEEEEcCCC
Confidence            9988888999999999876 5899999998753

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=100.00  E-value=3.8e-45  Score=346.41  Aligned_cols=200  Identities=19%  Similarity=0.225  Sum_probs=165.1

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEEE
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV  123 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~  123 (266)
                      +|+++|+++.|+ +..+|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+.           ..++|
T Consensus         3 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~   81 (490)
T PRK10938          3 SLQISQGTFRLS-DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSD   81 (490)
T ss_pred             eEEEEeEEEEcC-CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhce
Confidence            699999999995 456999999999999999999999999999999999999999999987552           13788


Q ss_pred             EeccccCCC-CC-----CCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 024529          124 FSQHHVDGL-DL-----SSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIIL  197 (266)
Q Consensus       124 ~~q~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll  197 (266)
                      ++|++...+ ..     ..+...++.  ......+++.++++.+++.+ ..++++.+|||||||||+||+||+.+|++||
T Consensus        82 ~~q~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~la~al~~~p~lll  158 (490)
T PRK10938         82 EWQRNNTDMLSPGEDDTGRTTAEIIQ--DEVKDPARCEQLAQQFGITA-LLDRRFKYLSTGETRKTLLCQALMSEPDLLI  158 (490)
T ss_pred             eccCcchhhcccchhhccccHHHhcc--cchhHHHHHHHHHHHcCCHh-hhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence            988752111 10     112222211  01112456788999999974 5678999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529          198 LDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  259 (266)
Q Consensus       198 LDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  259 (266)
                      |||||++||+.++.++.+.|.++   +.|||+||||++++..+||++++|++|+++ ..|+++++
T Consensus       159 LDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~  222 (490)
T PRK10938        159 LDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLA-ETGEREEI  222 (490)
T ss_pred             EcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEE-EeCCHHHH
Confidence            99999999999999998888664   569999999999999999999999999996 56887765

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=100.00  E-value=2.9e-44  Score=353.66  Aligned_cols=203  Identities=26%  Similarity=0.431  Sum_probs=170.7

Q ss_pred             CcEEEEeeEEEcCC--CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------ee
Q 024529           54 PIISFSDASFGYPG--GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR  120 (266)
Q Consensus        54 ~~l~~~~l~~~y~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~  120 (266)
                      ..|+++||+|+|++  ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.           ..
T Consensus       477 ~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~  556 (711)
T TIGR00958       477 GLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQ  556 (711)
T ss_pred             CeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhh
Confidence            35999999999975  246999999999999999999999999999999999999999999999874           36


Q ss_pred             EEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHHc
Q 024529          121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITF  190 (266)
Q Consensus       121 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqRv~lAral~  190 (266)
                      ++|++|++..   +..+..+++....+..+++++.++++..++.+...          ......||||||||++|||||+
T Consensus       557 i~~v~Q~~~l---F~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl  633 (711)
T TIGR00958       557 VALVGQEPVL---FSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALV  633 (711)
T ss_pred             ceEEecCccc---cccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHh
Confidence            9999999752   34566777654434556788888888888754322          1234579999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          191 KKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       191 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      ++|+|||||||||+||+++...+.+.....+.|+|+|||+++.+. .||+|++|++|+++ ..|+++++.+
T Consensus       634 ~~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~~i~-~aD~IivL~~G~iv-e~Gt~~eL~~  702 (711)
T TIGR00958       634 RKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTVE-RADQILVLKKGSVV-EMGTHKQLME  702 (711)
T ss_pred             cCCCEEEEEccccccCHHHHHHHHHhhccCCCeEEEEeccHHHHH-hCCEEEEEECCEEE-EeeCHHHHHh
Confidence            999999999999999999999888833333579999999999887 59999999999997 5799988764

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.5e-44  Score=312.14  Aligned_cols=200  Identities=27%  Similarity=0.328  Sum_probs=165.5

Q ss_pred             EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------eeEEEEec
Q 024529           56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFSQ  126 (266)
Q Consensus        56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~i~~~~q  126 (266)
                      |+++|+++.|+ ++.+|+|+||++.+|++++|+||||||||||+++|+|+++|++|+|.+++.         ..++|++|
T Consensus         1 i~i~~l~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q   79 (237)
T TIGR00968         1 IEIANISKRFG-SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQ   79 (237)
T ss_pred             CEEEEEEEEEC-CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEec
Confidence            47899999995 457999999999999999999999999999999999999999999988653         24899999


Q ss_pred             cccCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 024529          127 HHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE  200 (266)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDE  200 (266)
                      ++..  ....+..+++...  ....    ..+.+.++++.+++.+ ..++++.+||+||+||++|||||+.+|+++||||
T Consensus        80 ~~~~--~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~lS~G~~qrl~laral~~~p~llllDE  156 (237)
T TIGR00968        80 HYAL--FKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEG-LGDRYPNQLSGGQRQRVALARALAVEPQVLLLDE  156 (237)
T ss_pred             Chhh--ccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHh-HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            8632  1222333333211  1111    2345678899999974 5678889999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          201 PSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       201 Pt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      ||++||+.++..+.+.|.+.    +.|||++||+++++..+||++++|++|+++ ..|+.+++.
T Consensus       157 P~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~-~~~~~~~~~  219 (237)
T TIGR00968       157 PFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIE-QIGSPDEVY  219 (237)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEE-EecCHHHHH
Confidence            99999999999998888653    579999999999999999999999999997 567777764

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.9e-44  Score=313.50  Aligned_cols=201  Identities=19%  Similarity=0.253  Sum_probs=163.9

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC-----CceEEEEcCe-----------
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK-----------  118 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~-----------  118 (266)
                      +|+++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.+++.           
T Consensus         3 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~   81 (249)
T PRK14253          3 KFNIENLDLFYG-ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADL   81 (249)
T ss_pred             eEEEeccEEEEC-CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHH
Confidence            689999999995 45799999999999999999999999999999999999986     5999988662           


Q ss_pred             -eeEEEEeccccCCCCCCCcHHHHHHHh--CCCC-----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHHHH
Q 024529          119 -VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGV-----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAFAK  187 (266)
Q Consensus       119 -~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv~lAr  187 (266)
                       ..++|++|++.. +.  .+..+++...  ....     ..+++.++++.+++.+   ...++++.+|||||+|||+|||
T Consensus        82 ~~~i~~~~q~~~~-~~--~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar  158 (249)
T PRK14253         82 RIKVGMVFQKPNP-FP--MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIAR  158 (249)
T ss_pred             HhheeEEecCCCc-Cc--ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHH
Confidence             248999998632 12  3444443211  1111     1234566778888743   2346788999999999999999


Q ss_pred             HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          188 ITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       188 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      ||+.+|++|||||||+|||+.++..+.+.|.+.  +.|||+|||+++++..+||++++|++|+++ ..|+.+++.
T Consensus       159 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~  232 (249)
T PRK14253        159 TIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELV-EHDDTQVIF  232 (249)
T ss_pred             HHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence            999999999999999999999999998888765  469999999999999999999999999997 568877663

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.6e-45  Score=336.35  Aligned_cols=202  Identities=27%  Similarity=0.416  Sum_probs=174.7

Q ss_pred             cEEEEeeEEEcCCCC-cceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEE
Q 024529           55 IISFSDASFGYPGGP-ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA  122 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~-~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~  122 (266)
                      .++++||+|+|++.. ++|+|+||++++||++||+|++|||||||+++|+|.++|++|+|..++.           ..++
T Consensus       336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~  415 (573)
T COG4987         336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETIS  415 (573)
T ss_pred             eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHh
Confidence            799999999998654 6999999999999999999999999999999999999999999998773           2477


Q ss_pred             EEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccC----------CCCCCChHHHHHHHHHHHHccC
Q 024529          123 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQ----------PMYTLSGGQKSRVAFAKITFKK  192 (266)
Q Consensus       123 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~~LSgGqkqRv~lAral~~~  192 (266)
                      +++|...   -+..+..+++....++.+++++.++++++|+.+...+.          ....|||||+||++|||+|+++
T Consensus       416 vl~Qr~h---lF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~d  492 (573)
T COG4987         416 VLTQRVH---LFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHD  492 (573)
T ss_pred             hhccchH---HHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcC
Confidence            7777653   12345666666556677889999999999997544433          2568999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          193 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       193 p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      .+++||||||.|||+.+.+++++.+.+.  ++|+|||||++..++ .||+|++|++|+++ .+|++.++..
T Consensus       493 apl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le-~~drIivl~~Gkii-e~G~~~~Ll~  561 (573)
T COG4987         493 APLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLE-RMDRIIVLDNGKII-EEGTHAELLA  561 (573)
T ss_pred             CCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHh-hcCEEEEEECCeee-ecCCHHhhhc
Confidence            9999999999999999999999988654  679999999999998 59999999999997 6899888754

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.2e-44  Score=317.09  Aligned_cols=204  Identities=18%  Similarity=0.253  Sum_probs=166.2

Q ss_pred             CCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC-----CCceEEEEcCe--------
Q 024529           52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK--------  118 (266)
Q Consensus        52 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~--------  118 (266)
                      ..++|+++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|.+++.        
T Consensus        22 ~~~~l~~~nl~~~~~-~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~  100 (272)
T PRK14236         22 EQTALEVRNLNLFYG-DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVD  100 (272)
T ss_pred             CCcEEEEEEEEEEEC-CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccC
Confidence            356899999999995 4569999999999999999999999999999999999987     48999987652        


Q ss_pred             -----eeEEEEeccccCCCCCCCcHHHHHHH--hCCCC-----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHH
Q 024529          119 -----VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV-----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRV  183 (266)
Q Consensus       119 -----~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv  183 (266)
                           ..++|++|++.. +.  .+..+++..  .....     ..+.+.++++.+++.+   ...++++.+|||||+||+
T Consensus       101 ~~~~~~~i~~v~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv  177 (272)
T PRK14236        101 VAELRRRVGMVFQRPNP-FP--KSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRL  177 (272)
T ss_pred             HHHHhccEEEEecCCcc-Cc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHH
Confidence                 258999998632 12  244444321  11111     1244677888888853   234678899999999999


Q ss_pred             HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          184 AFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       184 ~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      +|||||+.+|++|||||||+|||+.++..+.+.|.+.  +.|||++||+++++..+||++++|++|+++ ..|+.+++.
T Consensus       178 ~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~  255 (272)
T PRK14236        178 VIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLV-EYGDTDTLF  255 (272)
T ss_pred             HHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEE-ecCCHHHHh
Confidence            9999999999999999999999999999998888654  469999999999999999999999999996 568877764

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.5e-45  Score=348.86  Aligned_cols=206  Identities=18%  Similarity=0.264  Sum_probs=166.9

Q ss_pred             CCcEEEEeeEEEcC--CCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC-CCceEEEEcCe-----------
Q 024529           53 PPIISFSDASFGYP--GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-PSSGTVFRSAK-----------  118 (266)
Q Consensus        53 ~~~l~~~~l~~~y~--~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~~~-----------  118 (266)
                      .++|+++|+++.|+  ++..+|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.+++.           
T Consensus       257 ~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~  336 (506)
T PRK13549        257 EVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAI  336 (506)
T ss_pred             CceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHH
Confidence            45899999999994  23468999999999999999999999999999999999998 59999998763           


Q ss_pred             -eeEEEEecccc-CCCCCCCcHHHHHHH----hCC-----C--CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHH
Q 024529          119 -VRIAVFSQHHV-DGLDLSSNPLLYMMR----CFP-----G--VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAF  185 (266)
Q Consensus       119 -~~i~~~~q~~~-~~~~~~~~~~~~~~~----~~~-----~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~l  185 (266)
                       ..++|++|++. ..+....+..+++..    .+.     .  ...+++.++++.+++.....++++.+|||||||||+|
T Consensus       337 ~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~l  416 (506)
T PRK13549        337 AQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVL  416 (506)
T ss_pred             HCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHH
Confidence             23899999852 112222344433321    110     1  1124578899999996335678899999999999999


Q ss_pred             HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529          186 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  259 (266)
Q Consensus       186 Aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  259 (266)
                      ||||+.+|++|||||||+|||+.++..+++.+.+   .+.|||+||||++++..+||++++|++|+++ ..|+.+++
T Consensus       417 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~-~~~~~~~~  492 (506)
T PRK13549        417 AKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLK-GDLINHNL  492 (506)
T ss_pred             HHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EEeccccC
Confidence            9999999999999999999999999988777654   4679999999999999999999999999986 56766665

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=100.00  E-value=9.4e-45  Score=313.20  Aligned_cols=185  Identities=28%  Similarity=0.372  Sum_probs=149.3

Q ss_pred             EEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee----------eEEEEeccccCCC
Q 024529           63 FGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV----------RIAVFSQHHVDGL  132 (266)
Q Consensus        63 ~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~----------~i~~~~q~~~~~~  132 (266)
                      +.| +.+.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++..          .++|++|+.. .+
T Consensus        29 ~~~-~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~-~~  106 (236)
T cd03267          29 RKY-REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKT-QL  106 (236)
T ss_pred             ccc-CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCcc-cc
Confidence            445 34569999999999999999999999999999999999999999999987642          5788874321 11


Q ss_pred             CCCCcHHHHHH--HhCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q 024529          133 DLSSNPLLYMM--RCFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD  206 (266)
Q Consensus       133 ~~~~~~~~~~~--~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD  206 (266)
                      ....+..+++.  ......    ..+.+.++++.+++.+ ..++++.+|||||+||++||+||+.+|++|||||||++||
T Consensus       107 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD  185 (236)
T cd03267         107 WWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEE-LLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLD  185 (236)
T ss_pred             CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence            22223333321  111111    1234667888999974 4577889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529          207 LDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKAT  250 (266)
Q Consensus       207 ~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~  250 (266)
                      +.+++.+.+.|.++    +.|||+|||+++++..+||++++|++|+++
T Consensus       186 ~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~  233 (236)
T cd03267         186 VVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLL  233 (236)
T ss_pred             HHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEE
Confidence            99999999988754    469999999999999999999999999986

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.8e-44  Score=312.89  Aligned_cols=202  Identities=23%  Similarity=0.312  Sum_probs=161.9

Q ss_pred             CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC--C---CceEEEEcCe---------
Q 024529           53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ--P---SSGTVFRSAK---------  118 (266)
Q Consensus        53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p---~~G~i~~~~~---------  118 (266)
                      +++|+++|++++|+ .+.+|+|+||+|.+||+++|+||||||||||+++|+|+++  |   ++|+|.+++.         
T Consensus         3 ~~~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~   81 (252)
T PRK14255          3 KKIITSSDVHLFYG-KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV   81 (252)
T ss_pred             cceEEEEeEEEEEC-CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence            46899999999995 4579999999999999999999999999999999999865  5   5899987663         


Q ss_pred             ----eeEEEEeccccCCCCCCCcHHHHHHH--hCCC--C---cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHH
Q 024529          119 ----VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG--V---PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVA  184 (266)
Q Consensus       119 ----~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~--~---~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv~  184 (266)
                          ..++|++|++.. +.  .+...++..  ....  .   ..+.+.+.++.+++..   ...++++.+|||||+||++
T Consensus        82 ~~~~~~i~~~~q~~~~-~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~  158 (252)
T PRK14255         82 VQLRKQVGMVFQQPNP-FP--FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVC  158 (252)
T ss_pred             HHhcCeEEEEECCCcc-CC--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHH
Confidence                248999998632 22  244443321  1111  1   1234566677777632   2346788999999999999


Q ss_pred             HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529          185 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  259 (266)
Q Consensus       185 lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  259 (266)
                      |||||+.+|++|||||||++||+.++..+.+.|.+.  +.|||+||||++++..+||++++|++|+++ ..|+..+.
T Consensus       159 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~  234 (252)
T PRK14255        159 IARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLI-EFADTKQM  234 (252)
T ss_pred             HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence            999999999999999999999999999998888764  469999999999999999999999999997 45665544

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=100.00  E-value=6.4e-45  Score=332.49  Aligned_cols=197  Identities=22%  Similarity=0.241  Sum_probs=163.1

Q ss_pred             EeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-------------------e
Q 024529           59 SDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------------V  119 (266)
Q Consensus        59 ~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------------~  119 (266)
                      .++.+.| +...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++++.                   .
T Consensus        28 ~~~~~~~-g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~  106 (382)
T TIGR03415        28 EEILDET-GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTH  106 (382)
T ss_pred             HHHHHhh-CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcC
Confidence            3556677 4556899999999999999999999999999999999999999999998762                   2


Q ss_pred             eEEEEeccccCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCC
Q 024529          120 RIAVFSQHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP  193 (266)
Q Consensus       120 ~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p  193 (266)
                      .++|++|++..  ....+..+++...  ..+.    ...++.++++.+|+.+ ..++++.+|||||+||++|||||+.+|
T Consensus       107 ~i~~vfQ~~~l--~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~-~~~~~~~~LSgGq~QRV~LARALa~~P  183 (382)
T TIGR03415       107 RVSMVFQKFAL--MPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQ-WADKKPGELSGGMQQRVGLARAFAMDA  183 (382)
T ss_pred             CEEEEECCCcC--CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence            59999998642  2233444444321  1111    2356788999999974 567889999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          194 HIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       194 ~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      +||||||||++||+.++..+.+.|.+.    +.|||+||||++++.++||++++|++|+++ ..|+.+++.
T Consensus       184 ~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv-~~g~~~ei~  253 (382)
T TIGR03415       184 DILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRII-QHGTPEEIV  253 (382)
T ss_pred             CEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EecCHHHHh
Confidence            999999999999999999988877543    679999999999999999999999999997 568877663

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.8e-44  Score=312.84  Aligned_cols=202  Identities=21%  Similarity=0.274  Sum_probs=163.8

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCC-----ceEEEEcCe----------
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS-----SGTVFRSAK----------  118 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~~~----------  118 (266)
                      ++|+++|+++.|+ ++.+|+++||+|.+|++++|+||||||||||+++|+|+++|+     +|+|.+++.          
T Consensus         3 ~~l~~~~l~~~~~-~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~   81 (251)
T PRK14249          3 PKIKIRGVNFFYH-KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV   81 (251)
T ss_pred             ceEEEEEEEEEEC-CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence            4799999999995 456999999999999999999999999999999999999997     699987652          


Q ss_pred             ---eeEEEEeccccCCCCCCCcHHHHHHHh--CCCC-----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHH
Q 024529          119 ---VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGV-----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAF  185 (266)
Q Consensus       119 ---~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv~l  185 (266)
                         ..++|++|++.. +.  .+..+++...  ....     ..+.+.++++.+++.+   ...++++.+|||||+||++|
T Consensus        82 ~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~l  158 (251)
T PRK14249         82 NLRKRVGMVFQQPNP-FP--KSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCI  158 (251)
T ss_pred             HhhceEEEEecCCcc-Cc--CcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHH
Confidence               248999998642 12  2444443211  1111     1234566677777642   23567889999999999999


Q ss_pred             HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          186 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       186 Aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      ||||+.+|++|||||||++||+.++..+.+.|.+.  +.|||+|||+++++..+||++++|++|++. ..|+.+++.
T Consensus       159 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~  234 (251)
T PRK14249        159 ARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLV-EYGRTGEIF  234 (251)
T ss_pred             HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEE-EeCCHHHHH
Confidence            99999999999999999999999999888888754  469999999999999999999999999996 567777653

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=100.00  E-value=4.5e-44  Score=344.88  Aligned_cols=203  Identities=24%  Similarity=0.416  Sum_probs=173.6

Q ss_pred             CcEEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeE
Q 024529           54 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI  121 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i  121 (266)
                      ..|+++|++|+|+++ +.+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.+++.           ..+
T Consensus       337 ~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i  416 (574)
T PRK11160        337 VSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAI  416 (574)
T ss_pred             CeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhhe
Confidence            459999999999653 46899999999999999999999999999999999999999999999874           259


Q ss_pred             EEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc---------CCCCCCChHHHHHHHHHHHHccC
Q 024529          122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL---------QPMYTLSGGQKSRVAFAKITFKK  192 (266)
Q Consensus       122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~~LSgGqkqRv~lAral~~~  192 (266)
                      +|++|++..   +..+..+++....+..+++++.++++.+++.+....         .....||||||||++|||||+++
T Consensus       417 ~~v~Q~~~l---f~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~  493 (574)
T PRK11160        417 SVVSQRVHL---FSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHD  493 (574)
T ss_pred             eEEcccchh---hcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence            999999742   334666666544445677889999999998754332         13567999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          193 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       193 p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      |++|||||||++||+.+.+.+.+.+.+.  +.|+|+|||+++.+.. ||+|++|++|+++ ..|+.+++.+
T Consensus       494 ~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~-~d~i~~l~~G~i~-~~g~~~~l~~  562 (574)
T PRK11160        494 APLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQ-FDRICVMDNGQII-EQGTHQELLA  562 (574)
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHh-CCEEEEEeCCeEE-EeCCHHHHHh
Confidence            9999999999999999999999998765  5699999999999874 9999999999997 5788877643

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=100.00  E-value=1.4e-44  Score=304.86  Aligned_cols=185  Identities=22%  Similarity=0.388  Sum_probs=155.7

Q ss_pred             EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee----------eEEEEe
Q 024529           56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV----------RIAVFS  125 (266)
Q Consensus        56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~----------~i~~~~  125 (266)
                      |+++|+++.|+ ++.+|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++..          .++|++
T Consensus         1 l~i~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~   79 (201)
T cd03231           1 LEADELTCERD-GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLG   79 (201)
T ss_pred             CEEEEEEEEeC-CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEec
Confidence            47899999995 4568999999999999999999999999999999999999999999887632          588999


Q ss_pred             ccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCC
Q 024529          126 QHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHL  205 (266)
Q Consensus       126 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~L  205 (266)
                      |++.  +....+..+++.........+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||||++|
T Consensus        80 q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~L  156 (201)
T cd03231          80 HAPG--IKTTLSVLENLRFWHADHSDEQVEEALARVGLNG-FEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTAL  156 (201)
T ss_pred             cccc--cCCCcCHHHHHHhhcccccHHHHHHHHHHcCChh-hhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Confidence            8753  2223345554432211224567888999999974 457889999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEE
Q 024529          206 DLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVV  244 (266)
Q Consensus       206 D~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l  244 (266)
                      |+.++.++.+.|.++   +.|+|++|||...+..+|++++.+
T Consensus       157 D~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~  198 (201)
T cd03231         157 DKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL  198 (201)
T ss_pred             CHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence            999999999888654   579999999999998999999877

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.9e-44  Score=313.81  Aligned_cols=200  Identities=20%  Similarity=0.269  Sum_probs=162.5

Q ss_pred             EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC-----CCceEEEEcCe------------
Q 024529           56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK------------  118 (266)
Q Consensus        56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~------------  118 (266)
                      -+++|+++.|+ ++.+|+|+||+|.+||+++|+||||||||||+++|+|+.+     |++|+|.+++.            
T Consensus         6 ~~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~   84 (251)
T PRK14244          6 ASVKNLNLWYG-SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLL   84 (251)
T ss_pred             EEeeeEEEEEC-CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHH
Confidence            36899999995 4578999999999999999999999999999999999986     47999988663            


Q ss_pred             -eeEEEEeccccCCCCCCCcHHHHHHHh--CCCC------cHHHHHHHHHhcCCCcc---cccCCCCCCChHHHHHHHHH
Q 024529          119 -VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGV------PEQKLRAHLGSFGVTGN---LALQPMYTLSGGQKSRVAFA  186 (266)
Q Consensus       119 -~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~------~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqRv~lA  186 (266)
                       ..++|++|++.. +.  .+..+++...  ....      ..+.+.++++.+++.+.   ..++++.+||||||||++||
T Consensus        85 ~~~i~~v~q~~~~-~~--~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~la  161 (251)
T PRK14244         85 RAKVGMVFQKPNP-FP--KSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIA  161 (251)
T ss_pred             hhhEEEEecCccc-cc--CCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHH
Confidence             248999998632 11  2344333211  1111      12346678899998542   34567899999999999999


Q ss_pred             HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          187 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       187 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      |||+.+|++|||||||++||+.++..+.+.|.+.  +.|||++|||++++..+||++++|++|+++ ..|+.+++.
T Consensus       162 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~  236 (251)
T PRK14244        162 RAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIV-EYNTTQEIF  236 (251)
T ss_pred             HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEE-EeCCHHHHh
Confidence            9999999999999999999999999998888654  469999999999999999999999999996 568877764

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.2e-44  Score=315.80  Aligned_cols=203  Identities=21%  Similarity=0.229  Sum_probs=163.9

Q ss_pred             CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC-----CCceEEEEcCe---------
Q 024529           53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK---------  118 (266)
Q Consensus        53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~---------  118 (266)
                      .++|+++|++++|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|.+++.         
T Consensus         8 ~~~l~i~~v~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~   86 (264)
T PRK14243          8 ETVLRTENLNVYYG-SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP   86 (264)
T ss_pred             ceEEEEeeeEEEEC-CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence            35899999999995 4568999999999999999999999999999999999976     48999988763         


Q ss_pred             ----eeEEEEeccccCCCCCCCcHHHHHHHh--CCC---CcHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHHH
Q 024529          119 ----VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPG---VPEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAFA  186 (266)
Q Consensus       119 ----~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv~lA  186 (266)
                          ..++|++|++.. +.  .+..+++...  ...   ...+++.++++.+++..   ...++++.+|||||+||++||
T Consensus        87 ~~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~la  163 (264)
T PRK14243         87 VEVRRRIGMVFQKPNP-FP--KSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIA  163 (264)
T ss_pred             HHHhhhEEEEccCCcc-cc--ccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHH
Confidence                248999998632 11  2444443211  111   12344566677777742   234678899999999999999


Q ss_pred             HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEe---------CCeEEecCCC
Q 024529          187 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVS---------EGKATPFHGT  255 (266)
Q Consensus       187 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~---------~G~i~~~~g~  255 (266)
                      |||+.+|++|||||||++||+.++..+.+.|.++  +.|||++||+++++..+||++++|+         +|+++ ..|+
T Consensus       164 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~-~~~~  242 (264)
T PRK14243        164 RAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLV-EFDR  242 (264)
T ss_pred             HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEE-EeCC
Confidence            9999999999999999999999999998888754  3699999999999999999999998         79996 6788


Q ss_pred             hhHHH
Q 024529          256 FHDYK  260 (266)
Q Consensus       256 ~~~~~  260 (266)
                      .+++.
T Consensus       243 ~~~~~  247 (264)
T PRK14243        243 TEKIF  247 (264)
T ss_pred             HHHHH
Confidence            77763

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=100.00  E-value=1.6e-44  Score=344.44  Aligned_cols=203  Identities=22%  Similarity=0.320  Sum_probs=164.9

Q ss_pred             EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCC--CCCceEEEEcC----------------
Q 024529           56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL--QPSSGTVFRSA----------------  117 (266)
Q Consensus        56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--~p~~G~i~~~~----------------  117 (266)
                      |+++|++++|+ ++.+|+|+||+|.+|++++|+||||||||||+++|+|++  +|++|+|.+.+                
T Consensus         1 l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g   79 (520)
T TIGR03269         1 IEVKNLTKKFD-GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVG   79 (520)
T ss_pred             CEEEEEEEEEC-CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccc
Confidence            57899999995 457999999999999999999999999999999999997  79999998751                


Q ss_pred             ----------------------------eeeEEEEeccccCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCC
Q 024529          118 ----------------------------KVRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGV  163 (266)
Q Consensus       118 ----------------------------~~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l  163 (266)
                                                  +..++|++|++.. +....+..+++..  .....    ..+++.++++.+++
T Consensus        80 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~-~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl  158 (520)
T TIGR03269        80 EPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFA-LYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQL  158 (520)
T ss_pred             cccccccccccccchhhhccCHHHHHHhhhcEEEEeccccc-cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence                                        1248999996311 1112233333321  11111    13467789999999


Q ss_pred             CcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcC
Q 024529          164 TGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVE  239 (266)
Q Consensus       164 ~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d  239 (266)
                      .+ ..++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.+.|.+    .+.|||+||||++++..+||
T Consensus       159 ~~-~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d  237 (520)
T TIGR03269       159 SH-RITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSD  237 (520)
T ss_pred             hh-hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcC
Confidence            64 55788999999999999999999999999999999999999999998777654    35799999999999999999


Q ss_pred             EEEEEeCCeEEecCCChhHHHHH
Q 024529          240 ELWVVSEGKATPFHGTFHDYKKM  262 (266)
Q Consensus       240 ~i~~l~~G~i~~~~g~~~~~~~~  262 (266)
                      ++++|++|+++ +.|+++++.+.
T Consensus       238 ~i~~l~~G~i~-~~g~~~~~~~~  259 (520)
T TIGR03269       238 KAIWLENGEIK-EEGTPDEVVAV  259 (520)
T ss_pred             EEEEEeCCEEe-eecCHHHHHHH
Confidence            99999999996 57888887554

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4e-44  Score=313.66  Aligned_cols=202  Identities=21%  Similarity=0.237  Sum_probs=164.3

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCC-----ceEEEEcCe----------
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS-----SGTVFRSAK----------  118 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~~~----------  118 (266)
                      ++|+++|+++.|+ +..+|+|+||+|++|++++|+|+||||||||+++|+|+++|+     +|+|.+++.          
T Consensus         6 ~~l~~~nl~~~~~-~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~   84 (261)
T PRK14258          6 PAIKVNNLSFYYD-TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLN   84 (261)
T ss_pred             ceEEEeeEEEEeC-CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchH
Confidence            3699999999995 456899999999999999999999999999999999999985     788877652          


Q ss_pred             ---eeEEEEeccccCCCCCCCcHHHHHHHh--CCCC-----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHH
Q 024529          119 ---VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGV-----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAF  185 (266)
Q Consensus       119 ---~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv~l  185 (266)
                         ..++|++|++.. +.  .+..+++...  ....     ....+.++++.+++.+   ...++++.+|||||+||++|
T Consensus        85 ~~~~~i~~~~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~l  161 (261)
T PRK14258         85 RLRRQVSMVHPKPNL-FP--MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCI  161 (261)
T ss_pred             HhhccEEEEecCCcc-Cc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHH
Confidence               238899987531 22  3444443211  1111     1244677888888742   24567889999999999999


Q ss_pred             HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeC-----CeEEecCCCh
Q 024529          186 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSE-----GKATPFHGTF  256 (266)
Q Consensus       186 Aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~-----G~i~~~~g~~  256 (266)
                      ||+|+.+|++|||||||++||+.++..+.+.|.+    .+.|||+||||++++..+||++++|++     |+++ ..|++
T Consensus       162 aral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~-~~~~~  240 (261)
T PRK14258        162 ARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV-EFGLT  240 (261)
T ss_pred             HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE-EeCCH
Confidence            9999999999999999999999999998887765    257999999999999999999999999     9986 67888


Q ss_pred             hHHH
Q 024529          257 HDYK  260 (266)
Q Consensus       257 ~~~~  260 (266)
                      +++.
T Consensus       241 ~~~~  244 (261)
T PRK14258        241 KKIF  244 (261)
T ss_pred             HHHH
Confidence            7764

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.1e-44  Score=343.98  Aligned_cols=200  Identities=18%  Similarity=0.295  Sum_probs=163.9

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC--CceEEEEcCe------------ee
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP--SSGTVFRSAK------------VR  120 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~~~------------~~  120 (266)
                      +|+++|++++|+ +..+|+|+||+|++|++++|+||||||||||+++|+|+++|  ++|+|.+++.            ..
T Consensus         1 ~l~i~~l~~~~~-~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~   79 (500)
T TIGR02633         1 LLEMKGIVKTFG-GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG   79 (500)
T ss_pred             CEEEEeEEEEeC-CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence            478999999995 45699999999999999999999999999999999999987  7999998763            24


Q ss_pred             EEEEeccccCCCCCCCcHHHHHHHh--CC--C--C----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 024529          121 IAVFSQHHVDGLDLSSNPLLYMMRC--FP--G--V----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF  190 (266)
Q Consensus       121 i~~~~q~~~~~~~~~~~~~~~~~~~--~~--~--~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~  190 (266)
                      ++|++|++..  ....+..+++...  ..  .  .    ..+++.++++.+++.....++++.+|||||||||+|||||+
T Consensus        80 i~~v~q~~~~--~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~  157 (500)
T TIGR02633        80 IVIIHQELTL--VPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALN  157 (500)
T ss_pred             EEEEeecccc--CCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHh
Confidence            8999998632  2223444443211  10  0  1    12457788999999754345778999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhH
Q 024529          191 KKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHD  258 (266)
Q Consensus       191 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~  258 (266)
                      .+|++|||||||+|||+.++.++.+.|++   .+.|||+||||++++..+||++++|++|+++ ..++.++
T Consensus       158 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~-~~~~~~~  227 (500)
T TIGR02633       158 KQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHV-ATKDMST  227 (500)
T ss_pred             hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEe-eecCccc
Confidence            99999999999999999999999887765   3569999999999999999999999999986 4565443

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=100.00  E-value=1.1e-44  Score=306.09  Aligned_cols=182  Identities=25%  Similarity=0.378  Sum_probs=149.7

Q ss_pred             EEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee---------------eEE
Q 024529           58 FSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV---------------RIA  122 (266)
Q Consensus        58 ~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~---------------~i~  122 (266)
                      ++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++..               .++
T Consensus         1 i~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~   79 (206)
T TIGR03608         1 LKNISKKFG-DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLG   79 (206)
T ss_pred             CcceEEEEC-CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCee
Confidence            478999995 4569999999999999999999999999999999999999999999887642               489


Q ss_pred             EEeccccCCCCCCCcHHHHHHH--hCCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 024529          123 VFSQHHVDGLDLSSNPLLYMMR--CFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII  196 (266)
Q Consensus       123 ~~~q~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll  196 (266)
                      |++|++..  ....+..+++..  ....    ...+++.++++.+++.+ ..++++.+|||||+||++|||||+.+|++|
T Consensus        80 ~~~q~~~~--~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~lS~G~~qr~~laral~~~p~ll  156 (206)
T TIGR03608        80 YLFQNFAL--IENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNL-KLKQKIYELSGGEQQRVALARAILKDPPLI  156 (206)
T ss_pred             EEecchhh--ccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchh-hhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence            99998632  222344333321  1111    12356788999999964 457888999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEE
Q 024529          197 LLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVV  244 (266)
Q Consensus       197 lLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l  244 (266)
                      ||||||++||+.++..+.+.|++.   +.|||++||+++++. +||++++|
T Consensus       157 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~~d~i~~l  206 (206)
T TIGR03608       157 LADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAK-QADRVIEL  206 (206)
T ss_pred             EEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh-hcCEEEeC
Confidence            999999999999999998888754   569999999999875 79999875

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=100.00  E-value=2.9e-44  Score=306.93  Aligned_cols=191  Identities=26%  Similarity=0.366  Sum_probs=157.0

Q ss_pred             cEEEEeeEEEcCCC---CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-------------
Q 024529           55 IISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------  118 (266)
Q Consensus        55 ~l~~~~l~~~y~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------  118 (266)
                      +|+++|+++.|+++   ..+|+++||++++|++++|+||||||||||+++|+|+++|++|+|.+++.             
T Consensus         1 ~l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~   80 (220)
T TIGR02982         1 VISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQL   80 (220)
T ss_pred             CEEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHH
Confidence            37899999999542   56999999999999999999999999999999999999999999988764             


Q ss_pred             -eeEEEEeccccCCCCCCCcHHHHHH--H-hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 024529          119 -VRIAVFSQHHVDGLDLSSNPLLYMM--R-CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF  190 (266)
Q Consensus       119 -~~i~~~~q~~~~~~~~~~~~~~~~~--~-~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~  190 (266)
                       ..++|++|++...  ...+..+++.  . .....    ....+.++++.+++.+ ..++++.+||+||+||++|||||+
T Consensus        81 ~~~i~~~~q~~~~~--~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~lS~G~~qrv~laral~  157 (220)
T TIGR02982        81 RRNIGYIFQAHNLL--GFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGD-HLDYYPHNLSGGQKQRVAIARALV  157 (220)
T ss_pred             HhheEEEcCChhhc--CCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChh-hhhcChhhCCHHHHHHHHHHHHHh
Confidence             2489999986322  2223333332  1 11111    1345788999999964 556788999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeE
Q 024529          191 KKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKA  249 (266)
Q Consensus       191 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i  249 (266)
                      .+|++|||||||++||+.++..+.+.|++.    +.|||++|||++.. .+||++++|++|++
T Consensus       158 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~-~~~d~v~~l~~g~~  219 (220)
T TIGR02982       158 HRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRIL-DVADRIVHMEDGKL  219 (220)
T ss_pred             cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH-hhCCEEEEEECCEE
Confidence            999999999999999999998888877643    57999999999965 69999999999985

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=100.00  E-value=3e-44  Score=306.79  Aligned_cols=194  Identities=23%  Similarity=0.375  Sum_probs=159.2

Q ss_pred             EEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEEE
Q 024529           56 ISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV  123 (266)
Q Consensus        56 l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~  123 (266)
                      |+++|+++.|++. +.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.           ..++|
T Consensus         3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   82 (221)
T cd03244           3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISI   82 (221)
T ss_pred             EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEE
Confidence            7899999999643 46999999999999999999999999999999999999999999998763           25899


Q ss_pred             EeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccc----------ccCCCCCCChHHHHHHHHHHHHccCC
Q 024529          124 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKITFKKP  193 (266)
Q Consensus       124 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkqRv~lAral~~~p  193 (266)
                      ++|++.  + +..+..+++.. ......+++.+.++.+++.+..          .++++..|||||+||++|||||+.+|
T Consensus        83 ~~q~~~--l-~~~tv~enl~~-~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p  158 (221)
T cd03244          83 IPQDPV--L-FSGTIRSNLDP-FGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKS  158 (221)
T ss_pred             ECCCCc--c-ccchHHHHhCc-CCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCC
Confidence            999864  1 12344444421 1123445666677777765332          13578899999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCC
Q 024529          194 HIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGT  255 (266)
Q Consensus       194 ~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~  255 (266)
                      ++|||||||++||+.++..+.+.|++.  +.|||++||+.+++.. ||++++|++|+++ ..|+
T Consensus       159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~i~~l~~g~~~-~~~~  220 (221)
T cd03244         159 KILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID-SDRILVLDKGRVV-EFDS  220 (221)
T ss_pred             CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-CCEEEEEECCeEE-ecCC
Confidence            999999999999999999999988764  4689999999999975 9999999999986 4443

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=100.00  E-value=7.8e-44  Score=344.27  Aligned_cols=202  Identities=23%  Similarity=0.388  Sum_probs=169.3

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEE
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA  122 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~  122 (266)
                      ..++++|++|+|++++.+|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.+++.           ..++
T Consensus       333 ~~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~  412 (588)
T PRK13657        333 GAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIA  412 (588)
T ss_pred             CeEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheE
Confidence            35999999999975456899999999999999999999999999999999999999999999874           3699


Q ss_pred             EEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHHccC
Q 024529          123 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFKK  192 (266)
Q Consensus       123 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqRv~lAral~~~  192 (266)
                      |++|++..   +..+..+++....++.+++++.++++.+++.+...          ......||||||||++|||||+++
T Consensus       413 ~v~Q~~~l---f~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~  489 (588)
T PRK13657        413 VVFQDAGL---FNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKD  489 (588)
T ss_pred             EEecCccc---ccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence            99999742   34566666654334456777888888777643221          122457999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          193 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       193 p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      |+|||||||||+||+.+.+.+.+.+.+.  ++|+|+|||+.+.+. .||+|++|++|++. ..|+.+++.
T Consensus       490 ~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~-~~D~ii~l~~G~i~-~~g~~~~l~  557 (588)
T PRK13657        490 PPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVR-NADRILVFDNGRVV-ESGSFDELV  557 (588)
T ss_pred             CCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHH-hCCEEEEEECCEEE-EeCCHHHHH
Confidence            9999999999999999999999988765  479999999999876 69999999999997 467776653

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=100.00  E-value=2.4e-44  Score=309.47  Aligned_cols=189  Identities=24%  Similarity=0.366  Sum_probs=153.7

Q ss_pred             ceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC----CceEEEEcCe---------eeEEEEeccccCCCCCCCc
Q 024529           71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP----SSGTVFRSAK---------VRIAVFSQHHVDGLDLSSN  137 (266)
Q Consensus        71 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p----~~G~i~~~~~---------~~i~~~~q~~~~~~~~~~~  137 (266)
                      +|+|+||+|++|++++|+||||||||||+++|+|+++|    ++|+|.+++.         ..++|++|++...+....+
T Consensus         1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t   80 (230)
T TIGR02770         1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT   80 (230)
T ss_pred             CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence            57899999999999999999999999999999999999    8999998773         3589999986311222223


Q ss_pred             HHHHHH---HhCCC---CcHHHHHHHHHhcCCCc--ccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH
Q 024529          138 PLLYMM---RCFPG---VPEQKLRAHLGSFGVTG--NLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA  209 (266)
Q Consensus       138 ~~~~~~---~~~~~---~~~~~~~~~l~~~~l~~--~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~  209 (266)
                      ...++.   .....   ...+++.++++.+++.+  ...++++.+|||||||||+|||||+.+|+||||||||++||+.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~  160 (230)
T TIGR02770        81 MGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVN  160 (230)
T ss_pred             HHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHH
Confidence            222211   11111   12345788999999963  34578899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          210 VEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       210 ~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      +..+.+.|.+.    +.|||++||+++++..+||++++|++|++. ..|+.+++.
T Consensus       161 ~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~  214 (230)
T TIGR02770       161 QARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIV-ERGTVKEIF  214 (230)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence            99888877643    569999999999999999999999999996 578877764

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.1e-44  Score=310.26  Aligned_cols=203  Identities=19%  Similarity=0.238  Sum_probs=163.8

Q ss_pred             CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC--C---CceEEEEcCe---------
Q 024529           53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ--P---SSGTVFRSAK---------  118 (266)
Q Consensus        53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p---~~G~i~~~~~---------  118 (266)
                      .++|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+.+  |   ++|+|.+++.         
T Consensus         4 ~~~i~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~   82 (253)
T PRK14261          4 EIILSTKNLNLWYG-EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV   82 (253)
T ss_pred             cceEEEeeeEEEEC-CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence            45899999999995 4579999999999999999999999999999999999975  3   4899987653         


Q ss_pred             ----eeEEEEeccccCCCCCCCcHHHHHHH---hCCCC----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHH
Q 024529          119 ----VRIAVFSQHHVDGLDLSSNPLLYMMR---CFPGV----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVA  184 (266)
Q Consensus       119 ----~~i~~~~q~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv~  184 (266)
                          ..++|++|++.. +.  .+..+++..   .....    ....+.++++.+++.+   ...++++.+|||||+||++
T Consensus        83 ~~~~~~i~~~~q~~~~-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~  159 (253)
T PRK14261         83 VALRRKIGMVFQRPNP-FP--KSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLC  159 (253)
T ss_pred             hhhhceEEEEecCCcc-Cc--ccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHH
Confidence                248999998632 22  244444321   11111    1234667788887742   2246788999999999999


Q ss_pred             HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          185 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       185 lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      |||||+.+|++|||||||+|||+.++..+.+.+.+.  +.|||++||+++++..+||++++|++|+++ ..|+.+++.
T Consensus       160 laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~  236 (253)
T PRK14261        160 IARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLI-EFDKTTQIF  236 (253)
T ss_pred             HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEE-EcCCHHHHH
Confidence            999999999999999999999999999988887654  469999999999999999999999999996 568877664

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=100.00  E-value=2.6e-44  Score=287.96  Aligned_cols=144  Identities=44%  Similarity=0.768  Sum_probs=136.3

Q ss_pred             EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCC
Q 024529           56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLS  135 (266)
Q Consensus        56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~  135 (266)
                      ++++|+++.|++ ..+++++||++++||+++|+||||||||||+++|+|+++|++|+|++++...++|++|         
T Consensus         1 l~~~~l~~~~~~-~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~---------   70 (144)
T cd03221           1 IELENLSKTYGG-KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ---------   70 (144)
T ss_pred             CEEEEEEEEECC-ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEcc---------
Confidence            478999999954 4699999999999999999999999999999999999999999999988777888877         


Q ss_pred             CcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH
Q 024529          136 SNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ  215 (266)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~  215 (266)
                                                             ||+||+||++|||||+.+|+++||||||++||+.++..+.+
T Consensus        71 ---------------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~  111 (144)
T cd03221          71 ---------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEE  111 (144)
T ss_pred             ---------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHH
Confidence                                                   99999999999999999999999999999999999999999


Q ss_pred             HHhhcCCEEEEEecCHHHHHhhcCEEEEEeCCe
Q 024529          216 GLVLFQGGILMVSHDEHLISGSVEELWVVSEGK  248 (266)
Q Consensus       216 ~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~G~  248 (266)
                      .+++.+.|||++||+.+++..+||++++|++|+
T Consensus       112 ~l~~~~~til~~th~~~~~~~~~d~v~~l~~g~  144 (144)
T cd03221         112 ALKEYPGTVILVSHDRYFLDQVATKIIELEDGK  144 (144)
T ss_pred             HHHHcCCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence            998888899999999999999999999999985

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.3e-44  Score=341.95  Aligned_cols=193  Identities=26%  Similarity=0.372  Sum_probs=162.5

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------eeE
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI  121 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~i  121 (266)
                      ++|+++|+++.|+ +..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.            ..+
T Consensus         3 ~~l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i   81 (501)
T PRK11288          3 PYLSFDGIGKTFP-GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV   81 (501)
T ss_pred             ceEEEeeeEEEEC-CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE
Confidence            5899999999995 456999999999999999999999999999999999999999999988763            248


Q ss_pred             EEEeccccCCCCCCCcHHHHHHHhC----CC-C----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccC
Q 024529          122 AVFSQHHVDGLDLSSNPLLYMMRCF----PG-V----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK  192 (266)
Q Consensus       122 ~~~~q~~~~~~~~~~~~~~~~~~~~----~~-~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~  192 (266)
                      +|++|++..  ....+..+++....    .. .    ..+++.++++.+++.. ..++++.+||||||||++|||||+.+
T Consensus        82 ~~v~q~~~~--~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~laral~~~  158 (501)
T PRK11288         82 AIIYQELHL--VPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDI-DPDTPLKYLSIGQRQMVEIAKALARN  158 (501)
T ss_pred             EEEEechhc--cCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCC-CcCCchhhCCHHHHHHHHHHHHHHhC
Confidence            999998532  22234444433210    01 1    1346778999999974 45788999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529          193 PHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKAT  250 (266)
Q Consensus       193 p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~  250 (266)
                      |++|||||||++||+.++.++.+.|.+.   +.|||+||||++++..+||++++|++|+++
T Consensus       159 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~  219 (501)
T PRK11288        159 ARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYV  219 (501)
T ss_pred             CCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence            9999999999999999999998887653   579999999999999999999999999986

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=100.00  E-value=7.4e-44  Score=343.21  Aligned_cols=201  Identities=23%  Similarity=0.362  Sum_probs=170.1

Q ss_pred             cEEEEeeEEEcCC-CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEE
Q 024529           55 IISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA  122 (266)
Q Consensus        55 ~l~~~~l~~~y~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~  122 (266)
                      .++++||+|+|++ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++.           ..++
T Consensus       330 ~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~  409 (571)
T TIGR02203       330 DVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVA  409 (571)
T ss_pred             eEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhce
Confidence            5999999999964 356899999999999999999999999999999999999999999999874           3599


Q ss_pred             EEeccccCCCCCCCcHHHHHHHhCC-CCcHHHHHHHHHhcCCCcccccC----------CCCCCChHHHHHHHHHHHHcc
Q 024529          123 VFSQHHVDGLDLSSNPLLYMMRCFP-GVPEQKLRAHLGSFGVTGNLALQ----------PMYTLSGGQKSRVAFAKITFK  191 (266)
Q Consensus       123 ~~~q~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~----------~~~~LSgGqkqRv~lAral~~  191 (266)
                      |++|++..   +..+..+++....+ ..+++++.++++.+++.+...+.          ....||||||||++||||++.
T Consensus       410 ~v~Q~~~l---f~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~  486 (571)
T TIGR02203       410 LVSQDVVL---FNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLK  486 (571)
T ss_pred             EEccCccc---ccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence            99999742   34456666643332 46788899999988875433221          235799999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          192 KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      +|+||||||||++||+.+.+.+++.|.+.  +.|+|+|||+.+.+. .||+|++|++|++. ..|+.+++.
T Consensus       487 ~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~-~~D~ii~l~~g~i~-~~g~~~~l~  555 (571)
T TIGR02203       487 DAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIE-KADRIVVMDDGRIV-ERGTHNELL  555 (571)
T ss_pred             CCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHH-hCCEEEEEeCCEEE-eeCCHHHHH
Confidence            99999999999999999999999998875  479999999998876 69999999999996 578877754

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.3e-44  Score=312.08  Aligned_cols=202  Identities=22%  Similarity=0.245  Sum_probs=164.7

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC-----CceEEEEcCe----------
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK----------  118 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~----------  118 (266)
                      ++|+++|+++.|+ +..+|+|+||+|++||+++|+|+||||||||+++|+|+++|     ++|+|.+++.          
T Consensus         6 ~~l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~   84 (259)
T PRK14260          6 PAIKVKDLSFYYN-TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININ   84 (259)
T ss_pred             ceEEEEEEEEEEC-CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchH
Confidence            4699999999995 45689999999999999999999999999999999999885     4899988753          


Q ss_pred             ---eeEEEEeccccCCCCCCCcHHHHHHHh---C---CCC-cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHH
Q 024529          119 ---VRIAVFSQHHVDGLDLSSNPLLYMMRC---F---PGV-PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAF  185 (266)
Q Consensus       119 ---~~i~~~~q~~~~~~~~~~~~~~~~~~~---~---~~~-~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv~l  185 (266)
                         ..++|++|++.. +.  .+..+++...   .   ... ..+.+.++++.+++.+   ...++++.+|||||+||++|
T Consensus        85 ~~~~~i~~v~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~l  161 (259)
T PRK14260         85 RLRRQIGMVFQRPNP-FP--MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCI  161 (259)
T ss_pred             hhhhheEEEeccccc-CC--ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHH
Confidence               248999998642 12  3444444211   1   111 1234667888888742   24567889999999999999


Q ss_pred             HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEe-----CCeEEecCCChhH
Q 024529          186 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVS-----EGKATPFHGTFHD  258 (266)
Q Consensus       186 Aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~-----~G~i~~~~g~~~~  258 (266)
                      ||||+.+|++|||||||++||+.++..+.+.|.+.  +.|||++||+++++..+||++++|+     +|+++ ..|+.++
T Consensus       162 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~-~~~~~~~  240 (259)
T PRK14260        162 ARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMV-EFGVTTQ  240 (259)
T ss_pred             HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEE-EeCCHHH
Confidence            99999999999999999999999999998888754  4699999999999999999999998     59986 5788877


Q ss_pred             HH
Q 024529          259 YK  260 (266)
Q Consensus       259 ~~  260 (266)
                      +.
T Consensus       241 ~~  242 (259)
T PRK14260        241 IF  242 (259)
T ss_pred             Hh
Confidence            63

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=2.8e-44  Score=304.38  Aligned_cols=186  Identities=28%  Similarity=0.384  Sum_probs=154.5

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee--------eEEEEec
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV--------RIAVFSQ  126 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~--------~i~~~~q  126 (266)
                      +|+++|+++.|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++..        .++|++|
T Consensus         2 ~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   80 (207)
T PRK13539          2 MLEGEDLACVRG-GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGH   80 (207)
T ss_pred             EEEEEeEEEEEC-CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecC
Confidence            689999999995 4568999999999999999999999999999999999999999999987742        4788887


Q ss_pred             cccCCCCCCCcHHHHHHH--hCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCC
Q 024529          127 HHVDGLDLSSNPLLYMMR--CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNH  204 (266)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~  204 (266)
                      ....  ....+..+++..  .......+++.++++.+++.+ ..++++.+|||||+||++|||||+.+|++|||||||++
T Consensus        81 ~~~~--~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~  157 (207)
T PRK13539         81 RNAM--KPALTVAENLEFWAAFLGGEELDIAAALEAVGLAP-LAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAA  157 (207)
T ss_pred             CCcC--CCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHH-HHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence            6432  222344444321  111233456888999999975 45788999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeC
Q 024529          205 LDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSE  246 (266)
Q Consensus       205 LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~  246 (266)
                      ||+.++..+.+.|.+.   +.|||++||+.+++..  |+++.++.
T Consensus       158 LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~--~~~~~~~~  200 (207)
T PRK13539        158 LDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG--ARELDLGP  200 (207)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc--CcEEeecC
Confidence            9999999998888654   6799999999999986  88887743

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=100.00  E-value=1.1e-43  Score=342.02  Aligned_cols=202  Identities=27%  Similarity=0.464  Sum_probs=171.9

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEEE
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV  123 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~  123 (266)
                      .|+++|++|+|++++++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.           ..+++
T Consensus       328 ~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~  407 (567)
T COG1132         328 SIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGI  407 (567)
T ss_pred             eEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccE
Confidence            4999999999975667999999999999999999999999999999999999999999999773           36999


Q ss_pred             EeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc----------CCCCCCChHHHHHHHHHHHHccCC
Q 024529          124 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKITFKKP  193 (266)
Q Consensus       124 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqRv~lAral~~~p  193 (266)
                      ++|++..   +..+..+++....++.+++++.++++..++.+...+          .....||||||||++||||++.+|
T Consensus       408 V~Qd~~L---F~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~  484 (567)
T COG1132         408 VSQDPLL---FSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNP  484 (567)
T ss_pred             Eccccee---ecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence            9998752   335677777655445677888888887765443222          234589999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          194 HIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       194 ~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      +||+||||||+||+.+...+.+.+.+.  +.|+|+|+|++..+.. ||+|++|++|+++ ..|+.+++.+
T Consensus       485 ~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~-aD~IiVl~~G~i~-e~G~h~eLl~  552 (567)
T COG1132         485 PILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKN-ADRIIVLDNGRIV-ERGTHEELLA  552 (567)
T ss_pred             CEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHh-CCEEEEEECCEEE-EecCHHHHHH
Confidence            999999999999999999999988643  4599999999999987 9999999999986 6799988754

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.8e-44  Score=343.30  Aligned_cols=196  Identities=17%  Similarity=0.234  Sum_probs=161.2

Q ss_pred             CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------ee
Q 024529           53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VR  120 (266)
Q Consensus        53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~  120 (266)
                      +++|+++|+++.| +  .+|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++.            ..
T Consensus       263 ~~~l~~~~l~~~~-~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~  339 (510)
T PRK09700        263 ETVFEVRNVTSRD-R--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG  339 (510)
T ss_pred             CcEEEEeCccccC-C--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCC
Confidence            4589999999977 3  3899999999999999999999999999999999999999999998763            24


Q ss_pred             EEEEecccc-CCCCCCCcHHHHHHHhC-----------C--C--CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHH
Q 024529          121 IAVFSQHHV-DGLDLSSNPLLYMMRCF-----------P--G--VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVA  184 (266)
Q Consensus       121 i~~~~q~~~-~~~~~~~~~~~~~~~~~-----------~--~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~  184 (266)
                      ++|++|++. ..+....++.+++....           .  .  ....++.++++.+++.....++++.+|||||||||+
T Consensus       340 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~  419 (510)
T PRK09700        340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVL  419 (510)
T ss_pred             cEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHH
Confidence            899999741 12222334444432110           0  0  012346788999999634567899999999999999


Q ss_pred             HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEe
Q 024529          185 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATP  251 (266)
Q Consensus       185 lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~  251 (266)
                      |||||+.+|++|||||||++||+.++..+.+.|+++   +.|||+||||++++..+||++++|++|+++.
T Consensus       420 lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~  489 (510)
T PRK09700        420 ISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQ  489 (510)
T ss_pred             HHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEE
Confidence            999999999999999999999999999988887643   6799999999999999999999999999863

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.6e-43  Score=310.42  Aligned_cols=205  Identities=22%  Similarity=0.285  Sum_probs=164.8

Q ss_pred             CCCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC-----CceEEEEcCe-------
Q 024529           51 PGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK-------  118 (266)
Q Consensus        51 ~~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~-------  118 (266)
                      +...+|+++|++++|+ ++.+|+|+||+|++||+++|+|+||||||||+++|+|+.+|     ++|+|.+++.       
T Consensus        12 ~~~~~l~~~~l~~~~~-~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~   90 (265)
T PRK14252         12 PTQQKSEVNKLNFYYG-GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP   90 (265)
T ss_pred             CCCceEEEEEEEEEEC-CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence            3456799999999995 45799999999999999999999999999999999999875     7999987541       


Q ss_pred             --------eeEEEEeccccCCCCCCCcHHHHHHHh--CCC-----CcHHHHHHHHHhcCCCc---ccccCCCCCCChHHH
Q 024529          119 --------VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPG-----VPEQKLRAHLGSFGVTG---NLALQPMYTLSGGQK  180 (266)
Q Consensus       119 --------~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqk  180 (266)
                              ..++|++|++... .  .+..+++...  ...     ...+++.++++.+++..   ...++++.+|||||+
T Consensus        91 ~~~~~~~~~~i~~~~q~~~~~-~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~  167 (265)
T PRK14252         91 EVDPIEVRMRISMVFQKPNPF-P--KSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQ  167 (265)
T ss_pred             ccCHHHHhccEEEEccCCcCC-c--chHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHH
Confidence                    2489999986321 1  2444443211  111     11345667777777642   234677899999999


Q ss_pred             HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhH
Q 024529          181 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHD  258 (266)
Q Consensus       181 qRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~  258 (266)
                      ||++|||||+.+|++|||||||++||+.++..+.+.|.+.  +.|||+|||+++++..+||++++|++|+++ ..|+.++
T Consensus       168 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~-~~g~~~~  246 (265)
T PRK14252        168 QRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELI-EFGATDT  246 (265)
T ss_pred             HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EeCCHHH
Confidence            9999999999999999999999999999999988888754  468999999999999999999999999997 5677766


Q ss_pred             HH
Q 024529          259 YK  260 (266)
Q Consensus       259 ~~  260 (266)
                      +.
T Consensus       247 ~~  248 (265)
T PRK14252        247 IF  248 (265)
T ss_pred             HH
Confidence            54

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=100.00  E-value=3.9e-44  Score=297.69  Aligned_cols=165  Identities=21%  Similarity=0.384  Sum_probs=138.3

Q ss_pred             CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------ee
Q 024529           53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VR  120 (266)
Q Consensus        53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~  120 (266)
                      .++|+++|++++|     +|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.            ..
T Consensus         2 ~~~l~~~~l~~~~-----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   76 (182)
T cd03215           2 EPVLEVRGLSVKG-----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG   76 (182)
T ss_pred             CcEEEEeccEEEe-----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence            3579999999998     799999999999999999999999999999999999999999988763            24


Q ss_pred             EEEEecccc-CCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 024529          121 IAVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD  199 (266)
Q Consensus       121 i~~~~q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLD  199 (266)
                      ++|++|++. ..+....+..+++....                           .||||||||++|||||+.+|++||||
T Consensus        77 i~~~~q~~~~~~~~~~~t~~e~l~~~~---------------------------~LS~G~~qrl~la~al~~~p~llllD  129 (182)
T cd03215          77 IAYVPEDRKREGLVLDLSVAENIALSS---------------------------LLSGGNQQKVVLARWLARDPRVLILD  129 (182)
T ss_pred             eEEecCCcccCcccCCCcHHHHHHHHh---------------------------hcCHHHHHHHHHHHHHccCCCEEEEC
Confidence            788888742 11222223333221100                           09999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeE
Q 024529          200 EPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKA  249 (266)
Q Consensus       200 EPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i  249 (266)
                      |||++||+.++..+.+.+.+.   +.|+|++||+++++..+||++++|++|++
T Consensus       130 EP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i  182 (182)
T cd03215         130 EPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI  182 (182)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence            999999999999998887654   56999999999999999999999999874

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=100.00  E-value=5.1e-44  Score=292.02  Aligned_cols=158  Identities=22%  Similarity=0.398  Sum_probs=131.0

Q ss_pred             EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCC
Q 024529           56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLS  135 (266)
Q Consensus        56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~  135 (266)
                      |+++|+++.|+ +..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++..         ...    
T Consensus         1 l~~~~l~~~~~-~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~---------~~~----   66 (163)
T cd03216           1 LELRGITKRFG-GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKE---------VSF----   66 (163)
T ss_pred             CEEEEEEEEEC-CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEE---------CCc----
Confidence            47899999995 4569999999999999999999999999999999999999999999876531         000    


Q ss_pred             CcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH
Q 024529          136 SNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ  215 (266)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~  215 (266)
                      ......            .   -..+++        +.+|||||+||++|||||+.+|++|||||||++||+.+++.+.+
T Consensus        67 ~~~~~~------------~---~~~i~~--------~~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~  123 (163)
T cd03216          67 ASPRDA------------R---RAGIAM--------VYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFK  123 (163)
T ss_pred             CCHHHH------------H---hcCeEE--------EEecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHH
Confidence            000000            0   001111        11299999999999999999999999999999999999999988


Q ss_pred             HHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529          216 GLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKAT  250 (266)
Q Consensus       216 ~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~  250 (266)
                      .++++   +.|||++|||.+++..+||++++|++|+++
T Consensus       124 ~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~  161 (163)
T cd03216         124 VIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV  161 (163)
T ss_pred             HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence            88654   569999999999999999999999999985

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=100.00  E-value=1.6e-43  Score=299.64  Aligned_cols=188  Identities=20%  Similarity=0.319  Sum_probs=154.7

Q ss_pred             CcEEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeE
Q 024529           54 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI  121 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i  121 (266)
                      ..|+++|++++|++. ..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.           ..+
T Consensus         5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i   84 (207)
T cd03369           5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSL   84 (207)
T ss_pred             CeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence            469999999999642 46899999999999999999999999999999999999999999998763           359


Q ss_pred             EEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 024529          122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP  201 (266)
Q Consensus       122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEP  201 (266)
                      +|++|++.. +  ..+..+++.. ......+++.+.++        .+.++..|||||+||++|||||+.+|++||||||
T Consensus        85 ~~v~q~~~~-~--~~tv~~~l~~-~~~~~~~~~~~~l~--------~~~~~~~LS~G~~qrv~laral~~~p~llllDEP  152 (207)
T cd03369          85 TIIPQDPTL-F--SGTIRSNLDP-FDEYSDEEIYGALR--------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEA  152 (207)
T ss_pred             EEEecCCcc-c--CccHHHHhcc-cCCCCHHHHHHHhh--------ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCC
Confidence            999998632 1  2345554422 11223344444444        2357789999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCC
Q 024529          202 SNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGT  255 (266)
Q Consensus       202 t~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~  255 (266)
                      |++||+.++..+.+.|+++  +.|+|++||+.+++.. ||++++|++|++. ..|+
T Consensus       153 ~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~-~d~v~~l~~g~i~-~~g~  206 (207)
T cd03369         153 TASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID-YDKILVMDAGEVK-EYDH  206 (207)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-CCEEEEEECCEEE-ecCC
Confidence            9999999999999888764  4699999999999976 9999999999986 3453

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=100.00  E-value=6.3e-44  Score=305.77  Aligned_cols=190  Identities=26%  Similarity=0.342  Sum_probs=153.1

Q ss_pred             EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCC
Q 024529           56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLS  135 (266)
Q Consensus        56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~  135 (266)
                      +.+++++++|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|++++... .+.....  .+...
T Consensus        23 l~~~~~~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~-~~~~~~~--~~~~~   98 (224)
T cd03220          23 LGILGRKGEVG-EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVS-SLLGLGG--GFNPE   98 (224)
T ss_pred             hhhhhhhhhcC-CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEc-hhhcccc--cCCCC
Confidence            78899999994 56799999999999999999999999999999999999999999999887531 1111111  11122


Q ss_pred             CcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH
Q 024529          136 SNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA  209 (266)
Q Consensus       136 ~~~~~~~~~--~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~  209 (266)
                      .+..+++..  ......    .+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||||++||+.+
T Consensus        99 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~  177 (224)
T cd03220          99 LTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGD-FIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAF  177 (224)
T ss_pred             CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence            333333321  111111    234677888899964 4678899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529          210 VEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKAT  250 (266)
Q Consensus       210 ~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~  250 (266)
                      +..+.+.+.+.   +.|||+|||+.+++..+||++++|++|+++
T Consensus       178 ~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~  221 (224)
T cd03220         178 QEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIR  221 (224)
T ss_pred             HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence            99888877653   469999999999999999999999999986

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=100.00  E-value=6.7e-44  Score=305.70  Aligned_cols=192  Identities=24%  Similarity=0.455  Sum_probs=155.6

Q ss_pred             CCcEEEEeeEEEcCCC--CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------e
Q 024529           53 PPIISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------V  119 (266)
Q Consensus        53 ~~~l~~~~l~~~y~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~  119 (266)
                      .++|+++|+++.|++.  ..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.           .
T Consensus         9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~   88 (226)
T cd03248           9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS   88 (226)
T ss_pred             CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence            4689999999999642  36899999999999999999999999999999999999999999998763           2


Q ss_pred             eEEEEeccccCCCCCCCcHHHHHHHhCCCCcHH---------HHHHHHHhc--CCCcccccCCCCCCChHHHHHHHHHHH
Q 024529          120 RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQ---------KLRAHLGSF--GVTGNLALQPMYTLSGGQKSRVAFAKI  188 (266)
Q Consensus       120 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqRv~lAra  188 (266)
                      .++|++|++.. +  ..+..+++..........         .+.++++.+  |+.. ..+.++.+|||||+||++||||
T Consensus        89 ~i~~~~q~~~l-~--~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~-~~~~~~~~LSgG~~qrv~lara  164 (226)
T cd03248          89 KVSLVGQEPVL-F--ARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDT-EVGEKGSQLSGGQKQRVAIARA  164 (226)
T ss_pred             hEEEEecccHH-H--hhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccc-hhhcCCCcCCHHHHHHHHHHHH
Confidence            58999998632 1  124444432111111111         134567777  6754 3567789999999999999999


Q ss_pred             HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeE
Q 024529          189 TFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKA  249 (266)
Q Consensus       189 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i  249 (266)
                      |+.+|++|||||||++||+.++..+.+.+.+.  +.|||++|||++++. .||++++|++|++
T Consensus       165 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d~i~~l~~g~i  226 (226)
T cd03248         165 LIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVE-RADQILVLDGGRI  226 (226)
T ss_pred             HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH-hCCEEEEecCCcC
Confidence            99999999999999999999999998888764  369999999999997 5999999999874

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2e-43  Score=318.30  Aligned_cols=205  Identities=20%  Similarity=0.264  Sum_probs=166.4

Q ss_pred             CCCcEEEEeeEEEcCC-CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC-----CCceEEEEcCe-------
Q 024529           52 GPPIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK-------  118 (266)
Q Consensus        52 ~~~~l~~~~l~~~y~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~-------  118 (266)
                      ...+|+++|++++|.+ ...+|+|+||+|++||++||+||||||||||+++|+|+.+     |++|+|.++|.       
T Consensus        77 ~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~  156 (329)
T PRK14257         77 HANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI  156 (329)
T ss_pred             cCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence            3458999999999953 3468999999999999999999999999999999999986     57999987653       


Q ss_pred             ------eeEEEEeccccCCCCCCCcHHHHHHH--hCCCCc-H----HHHHHHHHhcCCCc---ccccCCCCCCChHHHHH
Q 024529          119 ------VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGVP-E----QKLRAHLGSFGVTG---NLALQPMYTLSGGQKSR  182 (266)
Q Consensus       119 ------~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~~-~----~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqR  182 (266)
                            ..++|++|++...   ..+..+++..  ...... .    +.+.++++.+++.+   ...++++.+||||||||
T Consensus       157 ~~~~lr~~i~~v~q~~~~~---~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqR  233 (329)
T PRK14257        157 SSLELRTRIGMVFQKPTPF---EMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQR  233 (329)
T ss_pred             chHhhhccEEEEecCCccC---CCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHH
Confidence                  2589999987522   2345444431  111111 1    22566788887742   23457889999999999


Q ss_pred             HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          183 VAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       183 v~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      ++|||||+.+|+||||||||++||+.+...+.+.|.+.  +.|||+|||+++++..+||+|++|++|+++ ..|+++++.
T Consensus       234 l~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~-e~g~~~~l~  312 (329)
T PRK14257        234 LCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIE-EAGETKTIF  312 (329)
T ss_pred             HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHh
Confidence            99999999999999999999999999999888877654  479999999999999999999999999997 578888864

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=100.00  E-value=9.6e-44  Score=312.93  Aligned_cols=198  Identities=21%  Similarity=0.300  Sum_probs=165.4

Q ss_pred             EEEEeeEEEcCC-CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEEE
Q 024529           56 ISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV  123 (266)
Q Consensus        56 l~~~~l~~~y~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~  123 (266)
                      |+++|++++|++ ...+|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|++++.           ..++|
T Consensus         3 i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~   81 (275)
T cd03289           3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGV   81 (275)
T ss_pred             EEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEE
Confidence            789999999953 4568999999999999999999999999999999999997 7899998873           25899


Q ss_pred             EeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCC-----------CChHHHHHHHHHHHHccC
Q 024529          124 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYT-----------LSGGQKSRVAFAKITFKK  192 (266)
Q Consensus       124 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----------LSgGqkqRv~lAral~~~  192 (266)
                      ++|++..   +..+...++.. +.....+++.++++.+++.+. .++.+..           |||||+||++|||||+.+
T Consensus        82 v~q~~~l---f~~tv~~nl~~-~~~~~~~~~~~~l~~~gL~~~-~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~  156 (275)
T cd03289          82 IPQKVFI---FSGTFRKNLDP-YGKWSDEEIWKVAEEVGLKSV-IEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSK  156 (275)
T ss_pred             ECCCccc---chhhHHHHhhh-ccCCCHHHHHHHHHHcCCHHH-HHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence            9998642   12345555421 122456678889999999754 4455554           999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          193 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       193 p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      |+||||||||++||+.+...+.+.|.+.  +.|||+|||+++++.. ||+|++|++|+++ ..|+++++.+
T Consensus       157 p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~-~dri~vl~~G~i~-~~g~~~~l~~  225 (275)
T cd03289         157 AKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLE-CQRFLVIEENKVR-QYDSIQKLLN  225 (275)
T ss_pred             CCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHh-CCEEEEecCCeEe-ecCCHHHHhh
Confidence            9999999999999999999998888753  5699999999999875 9999999999997 5688877654

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=100.00  E-value=5.3e-44  Score=332.66  Aligned_cols=207  Identities=21%  Similarity=0.313  Sum_probs=173.8

Q ss_pred             CcEEEEeeEEEcCCC---CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCC----ceEEEEcCe--------
Q 024529           54 PIISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS----SGTVFRSAK--------  118 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~----~G~i~~~~~--------  118 (266)
                      ++|+++||++.|...   ..+++||||+|.+||++||+|.|||||||+.++|.|++++.    +|+|.++++        
T Consensus         4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~   83 (539)
T COG1123           4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER   83 (539)
T ss_pred             ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence            489999999999532   25899999999999999999999999999999999999887    899988874        


Q ss_pred             -------eeEEEEeccccCCCCCCCcHHHHHH---HhCC----CCcHHHHHHHHHhcCCCcccc-cCCCCCCChHHHHHH
Q 024529          119 -------VRIAVFSQHHVDGLDLSSNPLLYMM---RCFP----GVPEQKLRAHLGSFGVTGNLA-LQPMYTLSGGQKSRV  183 (266)
Q Consensus       119 -------~~i~~~~q~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~~l~~~~l~~~~~-~~~~~~LSgGqkqRv  183 (266)
                             ..|+|+||++...++...+.-..+.   ....    ....+++.++|+.+++++... ++++++|||||||||
T Consensus        84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv  163 (539)
T COG1123          84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRV  163 (539)
T ss_pred             HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHH
Confidence                   3699999998766655433322221   1111    124567888999999986554 358999999999999


Q ss_pred             HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529          184 AFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  259 (266)
Q Consensus       184 ~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  259 (266)
                      .||+||+.+|++||+||||.+||+.++.++++.|++    .+.++|+||||+..+..+||||+||.+|+++ ..|+.+++
T Consensus       164 ~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iV-E~G~~~~i  242 (539)
T COG1123         164 MIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIV-ETGPTEEI  242 (539)
T ss_pred             HHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEE-EecCHHHH
Confidence            999999999999999999999999999999888864    4678999999999999999999999999997 57888876


Q ss_pred             HH
Q 024529          260 KK  261 (266)
Q Consensus       260 ~~  261 (266)
                      ..
T Consensus       243 ~~  244 (539)
T COG1123         243 LS  244 (539)
T ss_pred             Hh
Confidence            43

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=100.00  E-value=1.7e-43  Score=347.83  Aligned_cols=203  Identities=25%  Similarity=0.421  Sum_probs=170.9

Q ss_pred             CcEEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeE
Q 024529           54 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI  121 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i  121 (266)
                      ..|+++||+|+|+++ +.+|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++.           ..+
T Consensus       454 ~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i  533 (694)
T TIGR01846       454 GAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQM  533 (694)
T ss_pred             CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhC
Confidence            359999999999643 56899999999999999999999999999999999999999999999874           258


Q ss_pred             EEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHHcc
Q 024529          122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFK  191 (266)
Q Consensus       122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqRv~lAral~~  191 (266)
                      +|++|++..   +..+..+++....+..+.+++.++++..++.+...          ......||||||||++|||||++
T Consensus       534 ~~v~q~~~l---f~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~  610 (694)
T TIGR01846       534 GVVLQENVL---FSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVG  610 (694)
T ss_pred             eEEccCCee---hhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHh
Confidence            999998642   34466666654334456777888888777653221          23356899999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          192 KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      +|++|||||||++||+.+...+.+.|.+.  +.|+|+|||+++.+.. ||++++|++|+++ ..|+.+++.+
T Consensus       611 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~ii~l~~G~i~-~~g~~~~l~~  680 (694)
T TIGR01846       611 NPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRA-CDRIIVLEKGQIA-ESGRHEELLA  680 (694)
T ss_pred             CCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHh-CCEEEEEeCCEEE-EeCCHHHHHH
Confidence            99999999999999999999999998875  4699999999999874 9999999999997 5788877643

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=100.00  E-value=3.2e-43  Score=339.57  Aligned_cols=203  Identities=18%  Similarity=0.327  Sum_probs=167.5

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEE
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA  122 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~  122 (266)
                      ..++++|++|+|++++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.           ..++
T Consensus       333 ~~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~  412 (585)
T TIGR01192       333 GAVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIA  412 (585)
T ss_pred             CeEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheE
Confidence            35999999999975556899999999999999999999999999999999999999999998774           2589


Q ss_pred             EEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcc----------cccCCCCCCChHHHHHHHHHHHHccC
Q 024529          123 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGN----------LALQPMYTLSGGQKSRVAFAKITFKK  192 (266)
Q Consensus       123 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkqRv~lAral~~~  192 (266)
                      |++|++..   +..+..+++....+..+++++.++++..++.+.          ........||||||||++|||||+.+
T Consensus       413 ~v~q~~~l---f~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~  489 (585)
T TIGR01192       413 TVFQDAGL---FNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKN  489 (585)
T ss_pred             EEccCCcc---CcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence            99998742   234566666443334456666666665544321          12345678999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          193 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       193 p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      |++|||||||++||+.+.+.+.+.|.+.  +.|+|+|||+.+.+. .||++++|++|+++ ..|+.+++.+
T Consensus       490 p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~~  558 (585)
T TIGR01192       490 APILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVR-NADLVLFLDQGRLI-EKGSFQELIQ  558 (585)
T ss_pred             CCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHH-cCCEEEEEECCEEE-EECCHHHHHH
Confidence            9999999999999999999999988764  579999999999996 59999999999997 5788777643

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=100.00  E-value=9.8e-44  Score=300.22  Aligned_cols=186  Identities=26%  Similarity=0.395  Sum_probs=149.2

Q ss_pred             EEEEeeEEEcCCC----CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCC
Q 024529           56 ISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDG  131 (266)
Q Consensus        56 l~~~~l~~~y~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~  131 (266)
                      |+++||+++|++.    +.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++  .++|++|++.. 
T Consensus         1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g--~i~~~~q~~~l-   77 (204)
T cd03250           1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG--SIAYVSQEPWI-   77 (204)
T ss_pred             CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC--EEEEEecCchh-
Confidence            4789999999654    3699999999999999999999999999999999999999999999988  79999998642 


Q ss_pred             CCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCc----------ccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 024529          132 LDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTG----------NLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP  201 (266)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEP  201 (266)
                      +  ..+..+++.... ....+...+.++.+++.+          ...+.++.+||+|||||++|||||+.+|+++|||||
T Consensus        78 ~--~~t~~enl~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP  154 (204)
T cd03250          78 Q--NGTIRENILFGK-PFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDP  154 (204)
T ss_pred             c--cCcHHHHhccCC-CcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence            1  335555543221 122333444444444321          123456789999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHH-Hhh---cCCEEEEEecCHHHHHhhcCEEEEEeCCe
Q 024529          202 SNHLDLDAVEALIQG-LVL---FQGGILMVSHDEHLISGSVEELWVVSEGK  248 (266)
Q Consensus       202 t~~LD~~~~~~l~~~-l~~---~~~tiiivtHd~~~~~~~~d~i~~l~~G~  248 (266)
                      |++||+.+.+.+.+. +.+   .+.|||++||+.+.+.. ||++++|++|+
T Consensus       155 ~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~-~d~i~~l~~G~  204 (204)
T cd03250         155 LSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH-ADQIVVLDNGR  204 (204)
T ss_pred             cccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh-CCEEEEEeCCC
Confidence            999999998888774 432   24699999999999997 99999999885

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=100.00  E-value=3.2e-43  Score=337.20  Aligned_cols=203  Identities=25%  Similarity=0.411  Sum_probs=166.8

Q ss_pred             CcEEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeE
Q 024529           54 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI  121 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i  121 (266)
                      ..++++|++|+|+++ +.+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.+++.           ..+
T Consensus       315 ~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i  394 (544)
T TIGR01842       315 GHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHI  394 (544)
T ss_pred             CeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhhe
Confidence            359999999999643 57899999999999999999999999999999999999999999998874           259


Q ss_pred             EEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCc----------ccccCCCCCCChHHHHHHHHHHHHcc
Q 024529          122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTG----------NLALQPMYTLSGGQKSRVAFAKITFK  191 (266)
Q Consensus       122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkqRv~lAral~~  191 (266)
                      +|++|++..   +..+..+++....+..+++++.++++..++.+          .........||||||||++|||||+.
T Consensus       395 ~~v~q~~~l---f~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~  471 (544)
T TIGR01842       395 GYLPQDVEL---FPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYG  471 (544)
T ss_pred             EEecCCccc---ccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhc
Confidence            999998742   23455666542222345566666666554432          12234567899999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          192 KPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      +|++|||||||++||+.+.+.+.+.+.+.   +.|+|++||+.+.+. .||++++|++|+++ ..|+.+++.+
T Consensus       472 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~~  542 (544)
T TIGR01842       472 DPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLG-CVDKILVLQDGRIA-RFGERDEVLA  542 (544)
T ss_pred             CCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHH-hCCEEEEEECCEEE-eeCCHHHHhh
Confidence            99999999999999999999999988764   479999999999875 69999999999997 6799888754

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=100.00  E-value=2e-44  Score=342.32  Aligned_cols=206  Identities=19%  Similarity=0.263  Sum_probs=164.0

Q ss_pred             CCcEEEEeeEEEcCC--CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC-CceEEEEcCe-----------
Q 024529           53 PPIISFSDASFGYPG--GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-SSGTVFRSAK-----------  118 (266)
Q Consensus        53 ~~~l~~~~l~~~y~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~~~-----------  118 (266)
                      .++|+++|+++.|++  +..+|+|+||+|.+||+++|+||||||||||+|+|+|+++| ++|+|.++++           
T Consensus       255 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~  334 (500)
T TIGR02633       255 DVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAI  334 (500)
T ss_pred             CceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHH
Confidence            458999999999942  34689999999999999999999999999999999999985 8999998762           


Q ss_pred             -eeEEEEecccc-CCCCCCCcHHHHHHH----hCC---CC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHH
Q 024529          119 -VRIAVFSQHHV-DGLDLSSNPLLYMMR----CFP---GV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAF  185 (266)
Q Consensus       119 -~~i~~~~q~~~-~~~~~~~~~~~~~~~----~~~---~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~l  185 (266)
                       ..++|++|++. ..+....+..+++..    ...   ..    ..+++.++++.+++.....++++.+|||||||||+|
T Consensus       335 ~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~l  414 (500)
T TIGR02633       335 RAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVL  414 (500)
T ss_pred             hCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHH
Confidence             24899999852 112222233332211    010   11    134577899999996444678999999999999999


Q ss_pred             HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529          186 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  259 (266)
Q Consensus       186 Aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  259 (266)
                      ||||+.+|++|||||||+|||+.++..+++.+.+   .+.|||+||||++++..+||++++|++|+++ ..++.+++
T Consensus       415 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~-~~~~~~~~  490 (500)
T TIGR02633       415 AKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLK-GDFVNHAL  490 (500)
T ss_pred             HHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EEEccccC
Confidence            9999999999999999999999999988766644   4679999999999999999999999999986 44444443

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=100.00  E-value=9.5e-44  Score=293.07  Aligned_cols=160  Identities=26%  Similarity=0.415  Sum_probs=137.1

Q ss_pred             EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe----------eeEEEEe
Q 024529           56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVFS  125 (266)
Q Consensus        56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~i~~~~  125 (266)
                      ++++|+++.|++ ..+|+++||++.+||+++|+||||||||||+++|+|+++|++|+|.+++.          ..++|++
T Consensus         1 l~~~~l~~~~~~-~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~   79 (173)
T cd03230           1 IEVRNLSKRYGK-KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLP   79 (173)
T ss_pred             CEEEEEEEEECC-eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEe
Confidence            468999999954 46899999999999999999999999999999999999999999988764          2478888


Q ss_pred             ccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCC
Q 024529          126 QHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHL  205 (266)
Q Consensus       126 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~L  205 (266)
                      |++.  +....+..+++.                               |||||+||++|||||+.+|++|||||||++|
T Consensus        80 q~~~--~~~~~tv~~~~~-------------------------------LS~G~~qrv~laral~~~p~illlDEPt~~L  126 (173)
T cd03230          80 EEPS--LYENLTVRENLK-------------------------------LSGGMKQRLALAQALLHDPELLILDEPTSGL  126 (173)
T ss_pred             cCCc--cccCCcHHHHhh-------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCC
Confidence            8753  111122222210                               9999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeE
Q 024529          206 DLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKA  249 (266)
Q Consensus       206 D~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i  249 (266)
                      |+.++..+.+.|.+.   +.|+|++|||.+++..+||++++|++|++
T Consensus       127 D~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i  173 (173)
T cd03230         127 DPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI  173 (173)
T ss_pred             CHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence            999999998888654   46899999999999999999999999874

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.9e-43  Score=315.94  Aligned_cols=204  Identities=20%  Similarity=0.233  Sum_probs=165.4

Q ss_pred             CCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC-----CCceEEEEcCe--------
Q 024529           52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK--------  118 (266)
Q Consensus        52 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~--------  118 (266)
                      .+++|.++|+++.|+ +..+|+++||+|.+|++++|+||||||||||+++|+|+++     |++|+|.+++.        
T Consensus        42 ~~~~l~i~nl~~~~~-~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~  120 (305)
T PRK14264         42 GDAKLSVEDLDVYYG-DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN  120 (305)
T ss_pred             CCceEEEEEEEEEeC-CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence            456899999999995 4569999999999999999999999999999999999986     68999988753        


Q ss_pred             -----eeEEEEeccccCCCCCCCcHHHHHHHhC----------------C---CCcHHHHHHHHHhcCCCc---ccccCC
Q 024529          119 -----VRIAVFSQHHVDGLDLSSNPLLYMMRCF----------------P---GVPEQKLRAHLGSFGVTG---NLALQP  171 (266)
Q Consensus       119 -----~~i~~~~q~~~~~~~~~~~~~~~~~~~~----------------~---~~~~~~~~~~l~~~~l~~---~~~~~~  171 (266)
                           ..++|++|++.. +.  .+..+++....                .   ....+.+.++++.+++.+   ...+++
T Consensus       121 ~~~~~~~i~~v~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~  197 (305)
T PRK14264        121 LVELRKRVGMVFQSPNP-FP--KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDN  197 (305)
T ss_pred             HHHHhhceEEEccCCcc-cc--ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCc
Confidence                 248999998632 11  24444332110                0   011345677888888742   234677


Q ss_pred             CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEE-EEEeCCe
Q 024529          172 MYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEEL-WVVSEGK  248 (266)
Q Consensus       172 ~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i-~~l~~G~  248 (266)
                      +.+|||||+||++|||||+.+|+||||||||+|||+.++..+.+.|+++  +.|||+|||+++++..+||++ ++|++|+
T Consensus       198 ~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~~G~  277 (305)
T PRK14264        198 ALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGE  277 (305)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEecCCE
Confidence            8999999999999999999999999999999999999999998888765  469999999999999999997 5779999


Q ss_pred             EEecCCChhHHH
Q 024529          249 ATPFHGTFHDYK  260 (266)
Q Consensus       249 i~~~~g~~~~~~  260 (266)
                      ++ ..|+.+++.
T Consensus       278 i~-~~g~~~~~~  288 (305)
T PRK14264        278 LV-EYDDTDKIF  288 (305)
T ss_pred             EE-EeCCHHHHH
Confidence            97 578877764

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.4e-44  Score=296.29  Aligned_cols=202  Identities=27%  Similarity=0.411  Sum_probs=165.4

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEEE
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV  123 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~  123 (266)
                      ||+++|++++.. ++.+++++||++.+||+++|+||||||||||||.|+|...|++|++.+++.           ..-+.
T Consensus         1 mi~a~nls~~~~-Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raV   79 (259)
T COG4559           1 MIRAENLSYSLA-GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAV   79 (259)
T ss_pred             CeeeeeeEEEee-cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhh
Confidence            589999999994 567999999999999999999999999999999999999999999998875           24678


Q ss_pred             EeccccCCCCCCCcHHHHHHHhCC----C--CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHcc------
Q 024529          124 FSQHHVDGLDLSSNPLLYMMRCFP----G--VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK------  191 (266)
Q Consensus       124 ~~q~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~------  191 (266)
                      ++|+....+.++......+.....    .  .+.+.+..+|...++.. +..+...+|||||+|||.+||+|++      
T Consensus        80 lpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~-la~R~y~~LSGGEqQRVqlARvLaQl~~~v~  158 (259)
T COG4559          80 LPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSG-LAGRDYRTLSGGEQQRVQLARVLAQLWPPVP  158 (259)
T ss_pred             cccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhh-hhccchhhcCchHHHHHHHHHHHHHccCCCC
Confidence            888865444444333333322111    1  12233778899999975 5678889999999999999999975      


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529          192 KPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  259 (266)
Q Consensus       192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  259 (266)
                      ++++|+||||||+||+.....+++..++   .+..|+.|-||++++..|||||++|++|+++ ..|++++.
T Consensus       159 ~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~-a~g~p~~v  228 (259)
T COG4559         159 SGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVI-ASGSPQDV  228 (259)
T ss_pred             CCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEe-ecCCHHHh
Confidence            4459999999999999988877776654   4678999999999999999999999999997 68888775

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=100.00  E-value=9.7e-44  Score=304.87  Aligned_cols=193  Identities=18%  Similarity=0.328  Sum_probs=157.8

Q ss_pred             cEEEEeeEEEcCCC---CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC---CCceEEEEcCe--------ee
Q 024529           55 IISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ---PSSGTVFRSAK--------VR  120 (266)
Q Consensus        55 ~l~~~~l~~~y~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~~~--------~~  120 (266)
                      .+.++|+++.|++.   +.+|+|+||+|++||+++|+||||||||||+++|+|+++   |++|+|.+++.        ..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~   82 (226)
T cd03234           3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC   82 (226)
T ss_pred             cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence            46799999999764   579999999999999999999999999999999999999   99999998764        35


Q ss_pred             EEEEeccccCCCCCCCcHHHHHHH----hCCC-Cc----HHHHHH-HHHhcCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 024529          121 IAVFSQHHVDGLDLSSNPLLYMMR----CFPG-VP----EQKLRA-HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF  190 (266)
Q Consensus       121 i~~~~q~~~~~~~~~~~~~~~~~~----~~~~-~~----~~~~~~-~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~  190 (266)
                      ++|++|++..  ....+..+++..    .... ..    ...+.+ .++.+++.. ..++.+.+|||||+||++|||||+
T Consensus        83 i~~~~q~~~~--~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~laral~  159 (226)
T cd03234          83 VAYVRQDDIL--LPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTR-IGGNLVKGISGGERRRVSIAVQLL  159 (226)
T ss_pred             EEEeCCCCcc--CcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchh-hhcccccCcCHHHHHHHHHHHHHH
Confidence            8999998532  222234433321    1111 11    123444 788888864 456788999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCH-HHHHhhcCEEEEEeCCeEE
Q 024529          191 KKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDE-HLISGSVEELWVVSEGKAT  250 (266)
Q Consensus       191 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~-~~~~~~~d~i~~l~~G~i~  250 (266)
                      .+|++|||||||++||+.++..+.+.+.+.   +.|+|++||+. +.+..+||++++|++|+++
T Consensus       160 ~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~  223 (226)
T cd03234         160 WDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIV  223 (226)
T ss_pred             hCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEE
Confidence            999999999999999999999988887653   56999999998 6888899999999999986

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=100.00  E-value=4.2e-44  Score=308.00  Aligned_cols=181  Identities=30%  Similarity=0.362  Sum_probs=148.9

Q ss_pred             eeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee------eEEEEeccccCCCCCCCcHHHHHHHh
Q 024529           72 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV------RIAVFSQHHVDGLDLSSNPLLYMMRC  145 (266)
Q Consensus        72 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~------~i~~~~q~~~~~~~~~~~~~~~~~~~  145 (266)
                      |+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++..      ..+|++|++..  ....+..+++...
T Consensus         1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l--~~~~tv~e~l~~~   78 (230)
T TIGR01184         1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSL--LPWLTVRENIALA   78 (230)
T ss_pred             CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCccc--CCCCCHHHHHHHH
Confidence            579999999999999999999999999999999999999999987742      25899998632  2223444443211


Q ss_pred             ----CCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 024529          146 ----FPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL  217 (266)
Q Consensus       146 ----~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l  217 (266)
                          .....    .+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l  157 (230)
T TIGR01184        79 VDRVLPDLSKSERRAIVEEHIALVGLTE-AADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEEL  157 (230)
T ss_pred             HHhcccCCCHHHHHHHHHHHHHHcCCHH-HHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHH
Confidence                11221    234678899999974 567889999999999999999999999999999999999999999998887


Q ss_pred             hhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCCh
Q 024529          218 VLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTF  256 (266)
Q Consensus       218 ~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~  256 (266)
                      .+.    +.|||+||||++++..+||++++|++|+++ ..|+.
T Consensus       158 ~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~-~~~~~  199 (230)
T TIGR01184       158 MQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAA-NIGQI  199 (230)
T ss_pred             HHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEe-cccCc
Confidence            652    569999999999999999999999999986 44543

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3e-44  Score=340.39  Aligned_cols=197  Identities=25%  Similarity=0.298  Sum_probs=162.7

Q ss_pred             EEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------eeEEEEe
Q 024529           58 FSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRIAVFS  125 (266)
Q Consensus        58 ~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~i~~~~  125 (266)
                      ++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.            ..++|++
T Consensus         1 ~~nl~~~~~-~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~   79 (491)
T PRK10982          1 MSNISKSFP-GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVH   79 (491)
T ss_pred             CCceEEEeC-CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEe
Confidence            368999995 457999999999999999999999999999999999999999999998763            2489999


Q ss_pred             ccccCCCCCCCcHHHHHHHh---CCC--Cc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 024529          126 QHHVDGLDLSSNPLLYMMRC---FPG--VP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII  196 (266)
Q Consensus       126 q~~~~~~~~~~~~~~~~~~~---~~~--~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll  196 (266)
                      |++.  +....+..+++...   ...  ..    .+++.++++.+++.. ..++++.+|||||||||+|||||+.+|++|
T Consensus        80 q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~lA~al~~~p~ll  156 (491)
T PRK10982         80 QELN--LVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDI-DPRAKVATLSVSQMQMIEIAKAFSYNAKIV  156 (491)
T ss_pred             cccc--cccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCC-CccCchhhCCHHHHHHHHHHHHHHhCCCEE
Confidence            9863  22223444443211   001  11    235778899999974 467889999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529          197 LLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  259 (266)
Q Consensus       197 lLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  259 (266)
                      ||||||++||+.++.++.+.|.+   .+.|||+||||++++..+||++++|++|+++ ..|+.+++
T Consensus       157 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~  221 (491)
T PRK10982        157 IMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWI-ATQPLAGL  221 (491)
T ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-eecChhhC
Confidence            99999999999999999887765   3579999999999999999999999999996 56765553

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.2e-43  Score=307.21  Aligned_cols=203  Identities=20%  Similarity=0.225  Sum_probs=166.6

Q ss_pred             CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC-----CceEEEEcCe---------
Q 024529           53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK---------  118 (266)
Q Consensus        53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~---------  118 (266)
                      ++.+.++++++.|+ +..+|+|+||+|++||+++|+|+||||||||+++|+|+++|     ++|+|.+++.         
T Consensus         6 ~~~~~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~   84 (261)
T PRK14263          6 PIVMDCKLDKIFYG-NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP   84 (261)
T ss_pred             CceEEEEeEEEEeC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence            45799999999994 55799999999999999999999999999999999999986     7999988763         


Q ss_pred             ----eeEEEEeccccCCCCCCCcHHHHHHHh--C---CCCcHHHHHHHHHhcCCCcc---cccCCCCCCChHHHHHHHHH
Q 024529          119 ----VRIAVFSQHHVDGLDLSSNPLLYMMRC--F---PGVPEQKLRAHLGSFGVTGN---LALQPMYTLSGGQKSRVAFA  186 (266)
Q Consensus       119 ----~~i~~~~q~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqRv~lA  186 (266)
                          ..++|++|++.. +  ..+..+++...  .   .....+++.++++.+++...   ..++++.+|||||+||++||
T Consensus        85 ~~~~~~i~~v~q~~~~-~--~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~la  161 (261)
T PRK14263         85 VVVRRYIGMVFQQPNP-F--SMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIA  161 (261)
T ss_pred             HhhhhceEEEecCCcc-c--cccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHH
Confidence                248999998642 1  24454444321  1   11123467788999988532   23467889999999999999


Q ss_pred             HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEe--------CCeEEecCCCh
Q 024529          187 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVS--------EGKATPFHGTF  256 (266)
Q Consensus       187 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~--------~G~i~~~~g~~  256 (266)
                      |||+.+|++|||||||+|||+.++.++.+.|.+.  +.|||++||+++++..+||++++|+        +|+++ ..|+.
T Consensus       162 ral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~-~~g~~  240 (261)
T PRK14263        162 RAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLV-EMGPT  240 (261)
T ss_pred             HHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEE-EeCCH
Confidence            9999999999999999999999999999988764  4689999999999999999999996        89997 56887


Q ss_pred             hHHH
Q 024529          257 HDYK  260 (266)
Q Consensus       257 ~~~~  260 (266)
                      +++.
T Consensus       241 ~~~~  244 (261)
T PRK14263        241 AQIF  244 (261)
T ss_pred             HHHH
Confidence            7764

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=5.1e-44  Score=285.50  Aligned_cols=192  Identities=24%  Similarity=0.312  Sum_probs=159.0

Q ss_pred             cEEEEeeEEEcCCC---CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-------------
Q 024529           55 IISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------  118 (266)
Q Consensus        55 ~l~~~~l~~~y~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------  118 (266)
                      +|+++++++..+..   ..+|++|+|.|++||.++|+|||||||||||-+++|+..|++|+|++.++             
T Consensus         6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~   85 (228)
T COG4181           6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL   85 (228)
T ss_pred             eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence            68999999988543   36899999999999999999999999999999999999999999997764             


Q ss_pred             --eeEEEEeccccCCCCCCCcHHHHHH----HhC--CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 024529          119 --VRIAVFSQHHVDGLDLSSNPLLYMM----RCF--PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF  190 (266)
Q Consensus       119 --~~i~~~~q~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~  190 (266)
                        ..+||+||.+..  ....+.+++..    ...  .......+.+.|+.+|+... ...++.+|||||+|||+|||||+
T Consensus        86 R~~~vGfVFQSF~L--ip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~R-l~HyP~qLSGGEQQRVAiARAfa  162 (228)
T COG4181          86 RARHVGFVFQSFHL--IPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKR-LTHYPAQLSGGEQQRVALARAFA  162 (228)
T ss_pred             hccceeEEEEeeec--cccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccc-cccCccccCchHHHHHHHHHHhc
Confidence              369999998642  22233333321    111  12234568889999999865 45678999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHh----hcCCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529          191 KKPHIILLDEPSNHLDLDAVEALIQGLV----LFQGGILMVSHDEHLISGSVEELWVVSEGKAT  250 (266)
Q Consensus       191 ~~p~lllLDEPt~~LD~~~~~~l~~~l~----~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~  250 (266)
                      ..|+||+.||||-+||..+-+++.+.+-    +.+.|+|+||||..++.+ |+|++.|.+|+++
T Consensus       163 ~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~R-c~R~~r~~~G~l~  225 (228)
T COG4181         163 GRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAAR-CDRQLRLRSGRLV  225 (228)
T ss_pred             CCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHh-hhheeeeecceec
Confidence            9999999999999999999888877653    346799999999999986 9999999999985

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=100.00  E-value=1.9e-43  Score=292.57  Aligned_cols=162  Identities=28%  Similarity=0.475  Sum_probs=139.0

Q ss_pred             EEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe----------eeEEEE
Q 024529           56 ISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVF  124 (266)
Q Consensus        56 l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~i~~~  124 (266)
                      |+++|+++.|++. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.          ..++|+
T Consensus         1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~   80 (178)
T cd03247           1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVL   80 (178)
T ss_pred             CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEE
Confidence            4789999999643 36899999999999999999999999999999999999999999998874          247888


Q ss_pred             eccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCC
Q 024529          125 SQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNH  204 (266)
Q Consensus       125 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~  204 (266)
                      +|++..  . ..+..+++                             +..|||||+||++||||++.+|++|||||||++
T Consensus        81 ~q~~~~--~-~~tv~~~i-----------------------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~  128 (178)
T cd03247          81 NQRPYL--F-DTTLRNNL-----------------------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVG  128 (178)
T ss_pred             ccCCee--e-cccHHHhh-----------------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCccc
Confidence            886421  1 11221111                             578999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529          205 LDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKAT  250 (266)
Q Consensus       205 LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~  250 (266)
                      ||+.+++.+++.+.+.  +.|||++||+.+++. .||++++|++|+++
T Consensus       129 LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d~~~~l~~g~i~  175 (178)
T cd03247         129 LDPITERQLLSLIFEVLKDKTLIWITHHLTGIE-HMDKILFLENGKII  175 (178)
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEE
Confidence            9999999998888754  568999999999997 69999999999986

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.9e-44  Score=326.97  Aligned_cols=201  Identities=26%  Similarity=0.414  Sum_probs=176.6

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEEE
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV  123 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~  123 (266)
                      .|+++||++.|++++++|+++||+|++||.+||+|+|||||||++|+|.++++ ++|+|.++|.           ..|||
T Consensus       351 ~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~  429 (591)
T KOG0057|consen  351 SIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGV  429 (591)
T ss_pred             cEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeE
Confidence            49999999999877779999999999999999999999999999999999999 9999999985           35999


Q ss_pred             EeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccC----------CCCCCChHHHHHHHHHHHHccCC
Q 024529          124 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQ----------PMYTLSGGQKSRVAFAKITFKKP  193 (266)
Q Consensus       124 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~~LSgGqkqRv~lAral~~~p  193 (266)
                      +||+..   -+..+.+.++....+....+++.++++++++++-..+.          +...|||||||||+||||++.+|
T Consensus       430 VPQd~~---LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda  506 (591)
T KOG0057|consen  430 VPQDSV---LFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDA  506 (591)
T ss_pred             eCCccc---ccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCC
Confidence            999864   34566777776555567889999999999997654433          34579999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          194 HIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       194 ~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      +|+++|||||+||.++..++++.+...  +.|+|+|-|+++.+.. ||+|+++++|++. ..|+.+++..
T Consensus       507 ~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~-~DkI~~l~nG~v~-e~gth~ell~  574 (591)
T KOG0057|consen  507 PILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKD-FDKIIVLDNGTVK-EYGTHSELLA  574 (591)
T ss_pred             CeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhc-CCEEEEEECCeeE-EeccHHHHhh
Confidence            999999999999999999999998763  5799999999999985 9999999999997 4688888765

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=100.00  E-value=2.2e-44  Score=329.67  Aligned_cols=260  Identities=44%  Similarity=0.803  Sum_probs=218.0

Q ss_pred             HHHHHhh-hhhhHHHHHHHHHHHHhccC---cccccCCCCcccccCCCCCCCCCCcEEEEeeEEEcCCCCcceeeceEEE
Q 024529            4 FIDKFRY-NAKRASLVQSRIKALERMGH---VDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGI   79 (266)
Q Consensus         4 ~~~~~~~-~~~~~~~~~~~~~~~~r~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~l~~vsl~i   79 (266)
                      +|.++.. .+..++.++++++.++++..   ......+....+.|+.... .++|.+.+.|++|+|.++..++++++|-|
T Consensus       335 ~ia~~g~g~a~~~rka~s~~K~~~km~~~gL~ek~~~~k~l~~~f~~vg~-~p~pvi~~~nv~F~y~~~~~iy~~l~fgi  413 (614)
T KOG0927|consen  335 LIARFGHGSAKLGRKAQSKEKTLDKMEADGLTEKVVGEKVLSFRFPEVGK-IPPPVIMVQNVSFGYSDNPMIYKKLNFGI  413 (614)
T ss_pred             HHHhhcccchhhhHHHhhhhhhHHHHhhccccccccCCceEEEEcccccC-CCCCeEEEeccccCCCCcchhhhhhhccc
Confidence            3444443 33445667777776666532   2222222223334444322 34678999999999976667999999999


Q ss_pred             eCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCC-CcHHHHHHHH
Q 024529           80 DLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPG-VPEQKLRAHL  158 (266)
Q Consensus        80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l  158 (266)
                      ..++++++|||||+|||||||+++|.+.|+.|.|.......++++.|+....+++......++...+++ ...+.++.++
T Consensus       414 d~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~il  493 (614)
T KOG0927|consen  414 DLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSIL  493 (614)
T ss_pred             CcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHH
Confidence            999999999999999999999999999999999998888889988888766677777778887777664 6678899999


Q ss_pred             HhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhc
Q 024529          159 GSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSV  238 (266)
Q Consensus       159 ~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~  238 (266)
                      .++|++.+....++++||+|||.||.+|++++.+|.+|||||||||||..++..+.++|.++.++||+||||..++..++
T Consensus       494 grfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~Ggvv~vSHDfrlI~qVa  573 (614)
T KOG0927|consen  494 GRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFPGGVVLVSHDFRLISQVA  573 (614)
T ss_pred             HHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccCCceeeeechhhHHHHHH
Confidence            99999988888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEeCCeEEecCCChhHHHHHHh
Q 024529          239 EELWVVSEGKATPFHGTFHDYKKMLQ  264 (266)
Q Consensus       239 d~i~~l~~G~i~~~~g~~~~~~~~~~  264 (266)
                      +++++..+|.+..+.|.+..|.....
T Consensus       574 eEi~~c~~~~~~~~~G~i~~yk~~l~  599 (614)
T KOG0927|consen  574 EEIWVCENGTVTKWDGDIEIYKEHLK  599 (614)
T ss_pred             HHhHhhccCceeecCccHHHHHHHHH
Confidence            99999999999899999999976554

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=100.00  E-value=1.5e-43  Score=291.91  Aligned_cols=158  Identities=32%  Similarity=0.626  Sum_probs=134.3

Q ss_pred             EEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEEE
Q 024529           56 ISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV  123 (266)
Q Consensus        56 l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~  123 (266)
                      |+++|++++|++. ..+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.           ..++|
T Consensus         1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   80 (173)
T cd03246           1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY   80 (173)
T ss_pred             CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence            4789999999642 46899999999999999999999999999999999999999999998763           24677


Q ss_pred             EeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 024529          124 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN  203 (266)
Q Consensus       124 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~  203 (266)
                      ++|++.  +. ..+..+++                                |||||+||++|||||+.+|++|||||||+
T Consensus        81 ~~q~~~--~~-~~tv~~~l--------------------------------LS~G~~qrv~la~al~~~p~~lllDEPt~  125 (173)
T cd03246          81 LPQDDE--LF-SGSIAENI--------------------------------LSGGQRQRLGLARALYGNPRILVLDEPNS  125 (173)
T ss_pred             ECCCCc--cc-cCcHHHHC--------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence            777642  11 11222111                                99999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeE
Q 024529          204 HLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKA  249 (266)
Q Consensus       204 ~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i  249 (266)
                      +||+.++..+.+.+.+.   +.|||++|||.+++. +||++++|++|++
T Consensus       126 ~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~~d~v~~l~~G~i  173 (173)
T cd03246         126 HLDVEGERALNQAIAALKAAGATRIVIAHRPETLA-SADRILVLEDGRV  173 (173)
T ss_pred             ccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEEECCCC
Confidence            99999999988887653   469999999999985 7999999999874

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.3e-43  Score=306.78  Aligned_cols=201  Identities=19%  Similarity=0.256  Sum_probs=164.2

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC-----CCceEEEEcCe-----------
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK-----------  118 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~-----------  118 (266)
                      +|+++||++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+..     |++|+|.+++.           
T Consensus         3 ~l~~~~v~~~~~-~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~   81 (250)
T PRK14266          3 RIEVENLNTYFD-DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVE   81 (250)
T ss_pred             EEEEEeEEEEeC-CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHH
Confidence            589999999995 4569999999999999999999999999999999999864     48999987763           


Q ss_pred             --eeEEEEeccccCCCCCCCcHHHHHHHh--CCC-C----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHHH
Q 024529          119 --VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPG-V----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAFA  186 (266)
Q Consensus       119 --~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~-~----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqRv~lA  186 (266)
                        ..++|++|++... .  .+..+++...  ... .    ..+++.++++.+++.+   ...++++..|||||+||++||
T Consensus        82 ~~~~i~~~~q~~~~~-~--~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~la  158 (250)
T PRK14266         82 LRKKVGMVFQKPNPF-P--KSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIA  158 (250)
T ss_pred             HhhheEEEecCCccC-c--chHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHH
Confidence              2489999986321 1  2444444211  111 1    1245667788888743   234678899999999999999


Q ss_pred             HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          187 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       187 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      |||+.+|++|||||||++||+.++..+.+.|.+.  +.|||++||+++++..+||++++|++|++. ..|+.+++.
T Consensus       159 ral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~-~~g~~~~~~  233 (250)
T PRK14266        159 RTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEII-ESGLTDQIF  233 (250)
T ss_pred             HHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEE-EeCCHHHHH
Confidence            9999999999999999999999999998888754  468999999999999999999999999996 678887764

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=100.00  E-value=3.3e-43  Score=328.46  Aligned_cols=202  Identities=22%  Similarity=0.309  Sum_probs=161.5

Q ss_pred             CCcEEEEeeEEEcCCC--CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccC
Q 024529           53 PPIISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVD  130 (266)
Q Consensus        53 ~~~l~~~~l~~~y~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~  130 (266)
                      .++++++|+++.|+++  +.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++...  ++.+..  
T Consensus        19 ~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~--~i~~~~--   94 (549)
T PRK13545         19 KPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA--LIAISS--   94 (549)
T ss_pred             cceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee--eEEecc--
Confidence            4589999999999653  3589999999999999999999999999999999999999999999987642  111111  


Q ss_pred             CCCCCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCC
Q 024529          131 GLDLSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNH  204 (266)
Q Consensus       131 ~~~~~~~~~~~~~~--~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~  204 (266)
                      .+....+..+++..  ......    .+.+.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||||+|
T Consensus        95 ~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~-~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsg  173 (549)
T PRK13545         95 GLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGK-FIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSV  173 (549)
T ss_pred             ccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChh-HhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccc
Confidence            11112233333321  111222    234567888999964 45788999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          205 LDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       205 LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      ||+.++..+++.|.+.   +.|||+||||++++..+||++++|++|++. ..|+++++.
T Consensus       174 LD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv-~~G~~~el~  231 (549)
T PRK13545        174 GDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVK-EYGDIKEVV  231 (549)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EECCHHHHH
Confidence            9999999888887654   579999999999999999999999999996 567766554

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=100.00  E-value=2e-43  Score=292.40  Aligned_cols=161  Identities=29%  Similarity=0.451  Sum_probs=134.1

Q ss_pred             EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-------------eeEE
Q 024529           56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------VRIA  122 (266)
Q Consensus        56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------~~i~  122 (266)
                      |+++|+++.|+ ++.+++++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.             ..++
T Consensus         1 i~~~~l~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~   79 (178)
T cd03229           1 LELKNVSKRYG-QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIG   79 (178)
T ss_pred             CEEEEEEEEEC-CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEE
Confidence            47899999995 456999999999999999999999999999999999999999999987663             1366


Q ss_pred             EEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCC
Q 024529          123 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS  202 (266)
Q Consensus       123 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt  202 (266)
                      |++|++.  +....+..+++.                   +          .|||||+||++|||||+.+|++|||||||
T Consensus        80 ~~~q~~~--~~~~~t~~~~l~-------------------~----------~lS~G~~qr~~la~al~~~p~llilDEP~  128 (178)
T cd03229          80 MVFQDFA--LFPHLTVLENIA-------------------L----------GLSGGQQQRVALARALAMDPDVLLLDEPT  128 (178)
T ss_pred             EEecCCc--cCCCCCHHHhee-------------------e----------cCCHHHHHHHHHHHHHHCCCCEEEEeCCc
Confidence            6666542  111112211110                   0          09999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCe
Q 024529          203 NHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGK  248 (266)
Q Consensus       203 ~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~  248 (266)
                      ++||+.++..+.+.+.+.    +.|+|++|||++++..+||++++|++|+
T Consensus       129 ~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~  178 (178)
T cd03229         129 SALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK  178 (178)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence            999999999988877653    5799999999999999999999999884

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=100.00  E-value=8.9e-43  Score=336.09  Aligned_cols=202  Identities=25%  Similarity=0.414  Sum_probs=169.0

Q ss_pred             CcEEEEeeEEEcCCC--CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------ee
Q 024529           54 PIISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR  120 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~  120 (266)
                      ..|+++||+++|+++  +.+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+++.           ..
T Consensus       336 ~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~  415 (576)
T TIGR02204       336 GEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRAR  415 (576)
T ss_pred             ceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHh
Confidence            359999999999642  46899999999999999999999999999999999999999999998873           25


Q ss_pred             EEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHHc
Q 024529          121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITF  190 (266)
Q Consensus       121 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqRv~lAral~  190 (266)
                      ++|++|++.   .+..+..+++....+..+++++.++++.+++.+...          ......||||||||++||||++
T Consensus       416 i~~~~Q~~~---lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~  492 (576)
T TIGR02204       416 MALVPQDPV---LFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAIL  492 (576)
T ss_pred             ceEEccCCc---cccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHH
Confidence            999999874   234566666654333456777888888877643221          1234679999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          191 KKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       191 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      ++|++||||||||+||+.+.+.+++.+.+.  +.|+|+|||+.+.+. .||++++|++|+++ ..|+++++.
T Consensus       493 ~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~-~~d~vi~l~~g~~~-~~g~~~~l~  562 (576)
T TIGR02204       493 KDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVL-KADRIVVMDQGRIV-AQGTHAELI  562 (576)
T ss_pred             hCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEE-eeecHHHHH
Confidence            999999999999999999999998888765  579999999998876 69999999999997 568877764

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=6.8e-44  Score=308.79  Aligned_cols=186  Identities=22%  Similarity=0.317  Sum_probs=156.3

Q ss_pred             ceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------------eeEEEEeccccCCCCCC
Q 024529           71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------VRIAVFSQHHVDGLDLS  135 (266)
Q Consensus        71 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------------~~i~~~~q~~~~~~~~~  135 (266)
                      -++|+||+|+.||++.|+|-||||||||+|+|.++++|++|+|.+++.               .+++++||.+-  +.+.
T Consensus        43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~Fa--LlPh  120 (386)
T COG4175          43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFA--LLPH  120 (386)
T ss_pred             eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhc--cccc
Confidence            478999999999999999999999999999999999999999998874               36899999853  3334


Q ss_pred             CcHHHHHHHhC--CC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH
Q 024529          136 SNPLLYMMRCF--PG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA  209 (266)
Q Consensus       136 ~~~~~~~~~~~--~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~  209 (266)
                      .+++++.....  .+    ..++++.++|+.+|+.+ +.++++.+|||||||||.|||||+.+|+|||+|||||+|||--
T Consensus       121 rtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~-~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLI  199 (386)
T COG4175         121 RTVLENVAFGLEVQGVPKAEREERALEALELVGLEG-YADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLI  199 (386)
T ss_pred             hhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchh-hhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHH
Confidence            45555543211  12    23567888999999985 5678999999999999999999999999999999999999977


Q ss_pred             HHHHHHHH----hhcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          210 VEALIQGL----VLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       210 ~~~l~~~l----~~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      +.++.+.|    ++.++|||+||||++++.++.|||.+|++|+++ -.|+++++.
T Consensus       200 R~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~iv-Q~Gtp~eIl  253 (386)
T COG4175         200 RTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIV-QVGTPEEIL  253 (386)
T ss_pred             HHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEE-EeCCHHHHH
Confidence            66665554    445789999999999999999999999999997 468877753

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=100.00  E-value=1.3e-43  Score=298.16  Aligned_cols=182  Identities=26%  Similarity=0.419  Sum_probs=148.3

Q ss_pred             EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe----------eeEEEEe
Q 024529           56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVFS  125 (266)
Q Consensus        56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~i~~~~  125 (266)
                      |+++|+++.|+ ++.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.          ..++|++
T Consensus         1 l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~   79 (198)
T TIGR01189         1 LAARNLACSRG-ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLG   79 (198)
T ss_pred             CEEEEEEEEEC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEec
Confidence            47899999995 457999999999999999999999999999999999999999999998774          2478999


Q ss_pred             ccccCCCCCCCcHHHHHHH--hCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 024529          126 QHHVDGLDLSSNPLLYMMR--CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN  203 (266)
Q Consensus       126 q~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~  203 (266)
                      |+..  +....+..+++..  .........+.++++.+++.+ ..++++.+|||||+||++||||++.+|+++||||||+
T Consensus        80 q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~  156 (198)
T TIGR01189        80 HLPG--LKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTG-FEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTT  156 (198)
T ss_pred             cCcc--cccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHH-HhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence            8743  2222344444321  111222446788999999974 4578899999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEE
Q 024529          204 HLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWV  243 (266)
Q Consensus       204 ~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~  243 (266)
                      +||+.++..+.+.+.++   +.|||++||+...+  .|++++.
T Consensus       157 ~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~--~~~~~~~  197 (198)
T TIGR01189       157 ALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL--VEARELR  197 (198)
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc--cceEEee
Confidence            99999999998888654   57999999998655  3677654

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.7e-44  Score=336.31  Aligned_cols=204  Identities=26%  Similarity=0.415  Sum_probs=173.5

Q ss_pred             CCcEEEEeeEEEcCCC--CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------e
Q 024529           53 PPIISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------V  119 (266)
Q Consensus        53 ~~~l~~~~l~~~y~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~  119 (266)
                      ...|+++||+|.||..  .++|+|+||+|+|||++||+||||+||||+.++|..+|.|++|+|..+|.           .
T Consensus       463 ~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~  542 (716)
T KOG0058|consen  463 QGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRR  542 (716)
T ss_pred             cceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHH
Confidence            3469999999999864  35999999999999999999999999999999999999999999999884           3


Q ss_pred             eEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHH
Q 024529          120 RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKIT  189 (266)
Q Consensus       120 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqRv~lAral  189 (266)
                      .||++.|+|..   +..+..+++.......++++++.+.+..+-++...          ..+..+||||||||+||||||
T Consensus       543 ~Ig~V~QEPvL---Fs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARAL  619 (716)
T KOG0058|consen  543 KIGLVGQEPVL---FSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARAL  619 (716)
T ss_pred             Heeeeecccee---ecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHH
Confidence            69999999853   34566777766555677888888777665543322          234568999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          190 FKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       190 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      +++|.||||||.||+||.++...+.+.|.+.  +.|||+|.|++..++. ||+|+++++|+++ ..|+.+++.+
T Consensus       620 lr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~-Ad~Ivvi~~G~V~-E~G~h~eLl~  691 (716)
T KOG0058|consen  620 LRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRH-ADQIVVIDKGRVV-EMGTHDELLS  691 (716)
T ss_pred             hcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhh-ccEEEEEcCCeEE-ecccHHHHhh
Confidence            9999999999999999999999888888653  4799999999999985 9999999999997 5788877654

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=100.00  E-value=3.1e-43  Score=305.41  Aligned_cols=193  Identities=22%  Similarity=0.277  Sum_probs=151.4

Q ss_pred             EEcCCCCcceeeceEEEe-----CCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCc
Q 024529           63 FGYPGGPILFKNLNFGID-----LDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSN  137 (266)
Q Consensus        63 ~~y~~~~~~l~~vsl~i~-----~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~  137 (266)
                      |+|++....+++++|++.     +||+++|+||||||||||+++|+|+++|++|+|.+++. .++|++|+....  ...+
T Consensus         1 ~~y~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~-~i~~~~q~~~~~--~~~t   77 (246)
T cd03237           1 YTYPTMKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD-TVSYKPQYIKAD--YEGT   77 (246)
T ss_pred             CCCcccccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc-eEEEecccccCC--CCCC
Confidence            356544456777777776     79999999999999999999999999999999998875 799999986422  2234


Q ss_pred             HHHHHHHhCC--CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH
Q 024529          138 PLLYMMRCFP--GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ  215 (266)
Q Consensus       138 ~~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~  215 (266)
                      ..+++.....  ........++++.+++.. ..++++.+|||||+|||+|||||+.+|+++||||||++||+.++..+.+
T Consensus        78 v~e~l~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~  156 (246)
T cd03237          78 VRDLLSSITKDFYTHPYFKTEIAKPLQIEQ-ILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASK  156 (246)
T ss_pred             HHHHHHHHhhhccccHHHHHHHHHHcCCHH-HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence            4444322111  112334677899999974 5678899999999999999999999999999999999999999998888


Q ss_pred             HHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEE-ecCCChhHH
Q 024529          216 GLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKAT-PFHGTFHDY  259 (266)
Q Consensus       216 ~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~-~~~g~~~~~  259 (266)
                      .|++.    +.|||+||||++++..+||++++|+++... ...+++.+.
T Consensus       157 ~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~  205 (246)
T cd03237         157 VIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSL  205 (246)
T ss_pred             HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHH
Confidence            77654    579999999999999999999999764432 123444443

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.5e-44  Score=338.02  Aligned_cols=202  Identities=18%  Similarity=0.253  Sum_probs=163.7

Q ss_pred             CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------ee
Q 024529           53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VR  120 (266)
Q Consensus        53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~  120 (266)
                      ++.++++|+++.     .+++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++++            ..
T Consensus       255 ~~~l~~~~~~~~-----~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~  329 (501)
T PRK11288        255 EVRLRLDGLKGP-----GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAG  329 (501)
T ss_pred             CcEEEEeccccC-----CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCC
Confidence            457999999832     3899999999999999999999999999999999999999999998763            24


Q ss_pred             EEEEecccc-CCCCCCCcHHHHHHHh---C--------CC-CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHH
Q 024529          121 IAVFSQHHV-DGLDLSSNPLLYMMRC---F--------PG-VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAK  187 (266)
Q Consensus       121 i~~~~q~~~-~~~~~~~~~~~~~~~~---~--------~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAr  187 (266)
                      ++|++|++. ..+....+..+++...   .        .. ...+.+.++++.+++.....++++.+|||||||||+|||
T Consensus       330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~  409 (501)
T PRK11288        330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGR  409 (501)
T ss_pred             CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHH
Confidence            889999852 1122223444433210   0        00 112457789999999534567899999999999999999


Q ss_pred             HHccCCCEEEEeCCCCCCCHHHHHHHHHHHh---hcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          188 ITFKKPHIILLDEPSNHLDLDAVEALIQGLV---LFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       188 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~---~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      ||+.+|+||||||||+|||+.++..+++.|.   +.+.|||+||||++++..+||++++|++|+++ +.|+.+++.
T Consensus       410 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~-~~~~~~~~~  484 (501)
T PRK11288        410 WLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIA-GELAREQAT  484 (501)
T ss_pred             HHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEE-EEEccccCC
Confidence            9999999999999999999999999887764   44679999999999999999999999999986 567666654

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=100.00  E-value=9.7e-43  Score=305.16  Aligned_cols=188  Identities=20%  Similarity=0.258  Sum_probs=151.5

Q ss_pred             CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHH--hC
Q 024529           69 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMR--CF  146 (266)
Q Consensus        69 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~--~~  146 (266)
                      ..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.  +++++|...  +....+...++..  ..
T Consensus        37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~--~~~~~~~~~--~~~~~tv~enl~~~~~~  112 (264)
T PRK13546         37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE--VSVIAISAG--LSGQLTGIENIEFKMLC  112 (264)
T ss_pred             eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCE--EeEEecccC--CCCCCcHHHHHHHHHHH
Confidence            35899999999999999999999999999999999999999999998875  455555532  1122234433321  11


Q ss_pred             CCCcH----HHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--
Q 024529          147 PGVPE----QKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--  220 (266)
Q Consensus       147 ~~~~~----~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--  220 (266)
                      .....    +.+..+++.+++.+ ..++++.+|||||+||++|||||+.+|++|||||||+|||+.++..+++.+.++  
T Consensus       113 ~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~  191 (264)
T PRK13546        113 MGFKRKEIKAMTPKIIEFSELGE-FIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKE  191 (264)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCch-hhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHH
Confidence            12222    23455777888864 567889999999999999999999999999999999999999998888877543  


Q ss_pred             -CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHHH
Q 024529          221 -QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM  262 (266)
Q Consensus       221 -~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~  262 (266)
                       +.|||++||+++++..+||++++|++|++. ..|+.+++.+.
T Consensus       192 ~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~-~~g~~~~~~~~  233 (264)
T PRK13546        192 QNKTIFFVSHNLGQVRQFCTKIAWIEGGKLK-DYGELDDVLPK  233 (264)
T ss_pred             CCCEEEEEcCCHHHHHHHcCEEEEEECCEEE-EeCCHHHHHHH
Confidence             679999999999999999999999999997 57888877554

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=100.00  E-value=1.7e-42  Score=333.78  Aligned_cols=202  Identities=22%  Similarity=0.337  Sum_probs=168.1

Q ss_pred             CcEEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeE
Q 024529           54 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI  121 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i  121 (266)
                      ..|+++|++|+|+++ ..+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.+++.           ..+
T Consensus       312 ~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i  391 (569)
T PRK10789        312 GELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRL  391 (569)
T ss_pred             CcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhhe
Confidence            359999999999643 56899999999999999999999999999999999999999999998874           358


Q ss_pred             EEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHHcc
Q 024529          122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFK  191 (266)
Q Consensus       122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqRv~lAral~~  191 (266)
                      +|++|++..   +..+..+++....+..+++++.++++..++.+...          ......||||||||++|||||++
T Consensus       392 ~~v~q~~~l---f~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~  468 (569)
T PRK10789        392 AVVSQTPFL---FSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLL  468 (569)
T ss_pred             EEEccCCee---ccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence            999998742   23456666543333456677777887777643221          23356899999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          192 KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      +|++|||||||++||+.+.+.+.+.+.+.  +.|+|+|||+++.+. .||++++|++|+++ ..|+.+++.
T Consensus       469 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~  537 (569)
T PRK10789        469 NAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALT-EASEILVMQHGHIA-QRGNHDQLA  537 (569)
T ss_pred             CCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHH-cCCEEEEEeCCEEE-EecCHHHHH
Confidence            99999999999999999999999988764  579999999999886 59999999999997 578877654

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=100.00  E-value=1.1e-43  Score=336.41  Aligned_cols=200  Identities=23%  Similarity=0.336  Sum_probs=160.5

Q ss_pred             CCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC-CceEEEEcCe------------
Q 024529           52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-SSGTVFRSAK------------  118 (266)
Q Consensus        52 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~~~------------  118 (266)
                      ..++|+++|+++.|+ +..+|+|+||+|++||+++|+||||||||||+|+|+|+.+| ++|+|+++++            
T Consensus       257 ~~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~  335 (490)
T PRK10938        257 NEPRIVLNNGVVSYN-DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIK  335 (490)
T ss_pred             CCceEEEeceEEEEC-CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHH
Confidence            356899999999995 45689999999999999999999999999999999998876 6999988652            


Q ss_pred             eeEEEEeccccCCCCCCCcHHHHHHHh-------CCCC---cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHH
Q 024529          119 VRIAVFSQHHVDGLDLSSNPLLYMMRC-------FPGV---PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKI  188 (266)
Q Consensus       119 ~~i~~~~q~~~~~~~~~~~~~~~~~~~-------~~~~---~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAra  188 (266)
                      ..++|++|++........+....+...       ....   ..+++.++++.+++.+...++++.+|||||||||+||||
T Consensus       336 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~a  415 (490)
T PRK10938        336 KHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRA  415 (490)
T ss_pred             hhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHH
Confidence            248999997532111111222221110       0011   134678899999997535678999999999999999999


Q ss_pred             HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---C-CEEEEEecCHHHHHh-hcCEEEEEeCCeEEec
Q 024529          189 TFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---Q-GGILMVSHDEHLISG-SVEELWVVSEGKATPF  252 (266)
Q Consensus       189 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~-~tiiivtHd~~~~~~-~~d~i~~l~~G~i~~~  252 (266)
                      |+.+|++|||||||+|||+.++..+.+.|.++   + .|||+||||++++.. +||++++|++|+++.+
T Consensus       416 l~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~  484 (490)
T PRK10938        416 LVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRY  484 (490)
T ss_pred             HhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEe
Confidence            99999999999999999999999998887654   3 369999999999987 5999999999998643

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=100.00  E-value=6.3e-43  Score=298.20  Aligned_cols=187  Identities=24%  Similarity=0.345  Sum_probs=149.2

Q ss_pred             EEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------------eeE
Q 024529           57 SFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------VRI  121 (266)
Q Consensus        57 ~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------------~~i  121 (266)
                      .+.|+.+.|+++..+|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++.               ..+
T Consensus         2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i   81 (218)
T cd03290           2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSV   81 (218)
T ss_pred             eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceE
Confidence            57899999975667999999999999999999999999999999999999999999988652               248


Q ss_pred             EEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccc----------ccCCCCCCChHHHHHHHHHHHHcc
Q 024529          122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKITFK  191 (266)
Q Consensus       122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkqRv~lAral~~  191 (266)
                      +|++|++.. +  ..+..+++.... .....+..++++.+++.+..          .+.++..|||||+||++|||||+.
T Consensus        82 ~~~~q~~~~-~--~~t~~~nl~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~  157 (218)
T cd03290          82 AYAAQKPWL-L--NATVEENITFGS-PFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQ  157 (218)
T ss_pred             EEEcCCCcc-c--cccHHHHHhhcC-cCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhh
Confidence            899998632 1  234555443221 12233445566666653211          235688999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHH-----HHhhcCCEEEEEecCHHHHHhhcCEEEEEeCCe
Q 024529          192 KPHIILLDEPSNHLDLDAVEALIQ-----GLVLFQGGILMVSHDEHLISGSVEELWVVSEGK  248 (266)
Q Consensus       192 ~p~lllLDEPt~~LD~~~~~~l~~-----~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~G~  248 (266)
                      +|++|||||||++||+.++..+++     .+++.+.|||++||+.+++. .||++++|++|+
T Consensus       158 ~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~-~~d~i~~l~~G~  218 (218)
T cd03290         158 NTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLP-HADWIIAMKDGS  218 (218)
T ss_pred             CCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHh-hCCEEEEecCCC
Confidence            999999999999999999887766     33344679999999999986 699999999874

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=3.1e-44  Score=288.92  Aligned_cols=202  Identities=24%  Similarity=0.337  Sum_probs=165.8

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------------
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------  118 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------------  118 (266)
                      +.|+++|+.++| +...+|++|||+.+.|+++.|+|.|||||||+||||.=+..|+.|.|..++.               
T Consensus         5 ~~l~v~dlHK~~-G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~a   83 (256)
T COG4598           5 NALEVEDLHKRY-GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPA   83 (256)
T ss_pred             cceehhHHHhhc-ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeC
Confidence            468999999999 4567999999999999999999999999999999999999999999987663               


Q ss_pred             ---------eeEEEEeccccCCCCCCCcHHHHHHHh----C---CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHH
Q 024529          119 ---------VRIAVFSQHHVDGLDLSSNPLLYMMRC----F---PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSR  182 (266)
Q Consensus       119 ---------~~i~~~~q~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqR  182 (266)
                               .+++++||++.  +....+.+++....    .   .....++++.+|.++|+.+. .+.++..|||||+||
T Consensus        84 d~~q~~r~Rs~L~mVFQ~FN--LWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek-~~~YP~~LSGGQQQR  160 (256)
T COG4598          84 DKRQLQRLRTRLGMVFQHFN--LWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEK-ADAYPAHLSGGQQQR  160 (256)
T ss_pred             CHHHHHHHHHHhhHhhhhcc--hhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhh-hhcCccccCchHHHH
Confidence                     13677777642  11222334433221    1   11234567889999999754 567889999999999


Q ss_pred             HHHHHHHccCCCEEEEeCCCCCCCHHHHHHH---HHHHhhcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529          183 VAFAKITFKKPHIILLDEPSNHLDLDAVEAL---IQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  259 (266)
Q Consensus       183 v~lAral~~~p~lllLDEPt~~LD~~~~~~l---~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  259 (266)
                      ++|||||+.+|+++|+|||||+|||+-.-++   +..|.+.+.|+++|||.+.|+..+++++++|++|.+. ..|+++++
T Consensus       161 ~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iE-E~G~P~qv  239 (256)
T COG4598         161 VAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIE-EEGPPEQV  239 (256)
T ss_pred             HHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceec-ccCChHHH
Confidence            9999999999999999999999999976655   4555667899999999999999999999999999985 68888876


Q ss_pred             H
Q 024529          260 K  260 (266)
Q Consensus       260 ~  260 (266)
                      .
T Consensus       240 f  240 (256)
T COG4598         240 F  240 (256)
T ss_pred             h
Confidence            3

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=100.00  E-value=1.6e-43  Score=336.80  Aligned_cols=201  Identities=20%  Similarity=0.295  Sum_probs=162.2

Q ss_pred             CCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------e
Q 024529           52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------V  119 (266)
Q Consensus        52 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~  119 (266)
                      ++++|+++|+++      .+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.            .
T Consensus       265 ~~~~l~~~~l~~------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~  338 (510)
T PRK15439        265 GAPVLTVEDLTG------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLAR  338 (510)
T ss_pred             CCceEEEeCCCC------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhC
Confidence            456899999983      1589999999999999999999999999999999999999999998764            2


Q ss_pred             eEEEEecccc-CCCCCCCcHHHHHHH------hC--C-CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHH
Q 024529          120 RIAVFSQHHV-DGLDLSSNPLLYMMR------CF--P-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT  189 (266)
Q Consensus       120 ~i~~~~q~~~-~~~~~~~~~~~~~~~------~~--~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral  189 (266)
                      .++|++|++. ..+....+...++..      ..  . ....+.+.++++.+++.....++++.+|||||||||+|||||
T Consensus       339 ~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al  418 (510)
T PRK15439        339 GLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCL  418 (510)
T ss_pred             CcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHH
Confidence            4899999742 112222233333211      01  0 111235678899999963346788999999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529          190 FKKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  259 (266)
Q Consensus       190 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  259 (266)
                      +.+|+||||||||+|||+.++..+.+.|.+   .+.|||+||||++++..+||++++|++|+++ +.|+.+++
T Consensus       419 ~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~-~~~~~~~~  490 (510)
T PRK15439        419 EASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEIS-GALTGAAI  490 (510)
T ss_pred             hhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EEEccccC
Confidence            999999999999999999999998887765   4679999999999999999999999999996 45655544

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=100.00  E-value=8.5e-43  Score=333.19  Aligned_cols=174  Identities=31%  Similarity=0.527  Sum_probs=149.9

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe----------eeEEEE
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVF  124 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~i~~~  124 (266)
                      .|+++||+|+|++++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.          ..++|+
T Consensus       334 ~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V  413 (529)
T TIGR02868       334 TLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVF  413 (529)
T ss_pred             eEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEE
Confidence            5999999999976556999999999999999999999999999999999999999999999884          369999


Q ss_pred             eccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc----------CCCCCCChHHHHHHHHHHHHccCCC
Q 024529          125 SQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKITFKKPH  194 (266)
Q Consensus       125 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqRv~lAral~~~p~  194 (266)
                      +|++..   +..+..+++....+..+++++.++++..++++....          .....||||||||++|||||+++|+
T Consensus       414 ~Q~~~l---F~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~  490 (529)
T TIGR02868       414 AQDAHL---FDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAP  490 (529)
T ss_pred             ccCccc---ccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCC
Confidence            999752   345677776554445678889999999888653322          1245799999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCH
Q 024529          195 IILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDE  231 (266)
Q Consensus       195 lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~  231 (266)
                      |||||||||+||+++...+.+.+.+.  +.|+|+|||++
T Consensus       491 iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl  529 (529)
T TIGR02868       491 ILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL  529 (529)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence            99999999999999999999999865  57999999984

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=100.00  E-value=1.2e-42  Score=303.77  Aligned_cols=202  Identities=16%  Similarity=0.215  Sum_probs=159.4

Q ss_pred             CCcEEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------ee
Q 024529           53 PPIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR  120 (266)
Q Consensus        53 ~~~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~  120 (266)
                      ...|+++|++++|++. ..+|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++.           ..
T Consensus        17 ~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~   96 (257)
T cd03288          17 GGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSR   96 (257)
T ss_pred             CceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhh
Confidence            4569999999999642 46899999999999999999999999999999999999999999998763           24


Q ss_pred             EEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhc-----------CCCcccccCCCCCCChHHHHHHHHHHHH
Q 024529          121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSF-----------GVTGNLALQPMYTLSGGQKSRVAFAKIT  189 (266)
Q Consensus       121 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~LSgGqkqRv~lAral  189 (266)
                      ++|++|++.. +  ..+..+++... .......+.++++.+           ++.. ..+.++..|||||+||++|||||
T Consensus        97 i~~v~q~~~l-~--~~tv~~nl~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~-~~~~~~~~LS~G~~qrl~laral  171 (257)
T cd03288          97 LSIILQDPIL-F--SGSIRFNLDPE-CKCTDDRLWEALEIAQLKNMVKSLPGGLDA-VVTEGGENFSVGQRQLFCLARAF  171 (257)
T ss_pred             EEEECCCCcc-c--ccHHHHhcCcC-CCCCHHHHHHHHHHhCcHHHHhhcccccCc-EeccCCCcCCHHHHHHHHHHHHH
Confidence            8999998632 1  22333332111 011122333333333           3332 23456789999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          190 FKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       190 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      +.+|++|||||||++||+.+...+.+.+.+.  +.|||++||+++.+.. ||++++|++|+++ ..|+.+++.+
T Consensus       172 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~-~dri~~l~~G~i~-~~g~~~~~~~  243 (257)
T cd03288         172 VRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILD-ADLVLVLSRGILV-ECDTPENLLA  243 (257)
T ss_pred             hcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHh-CCEEEEEECCEEE-EeCCHHHHHh
Confidence            9999999999999999999999988888653  5799999999999985 9999999999997 5788887754

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=100.00  E-value=3e-43  Score=334.26  Aligned_cols=200  Identities=24%  Similarity=0.336  Sum_probs=161.9

Q ss_pred             CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------ee
Q 024529           53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VR  120 (266)
Q Consensus        53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~  120 (266)
                      +++++++|+++      .+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++.            ..
T Consensus       255 ~~~l~~~~l~~------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~  328 (501)
T PRK10762        255 EVRLKVDNLSG------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANG  328 (501)
T ss_pred             CcEEEEeCccc------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCC
Confidence            45799999984      2689999999999999999999999999999999999999999998763            24


Q ss_pred             EEEEecccc-CCCCCCCcHHHHHHH----hCC---C-C----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHH
Q 024529          121 IAVFSQHHV-DGLDLSSNPLLYMMR----CFP---G-V----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAK  187 (266)
Q Consensus       121 i~~~~q~~~-~~~~~~~~~~~~~~~----~~~---~-~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAr  187 (266)
                      ++|++|++. ..+....+..+++..    ...   . .    ..+++.++++.+++.....++++.+|||||||||+|||
T Consensus       329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~  408 (501)
T PRK10762        329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIAR  408 (501)
T ss_pred             CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHH
Confidence            899999852 112222334333321    000   0 1    13457789999999533467899999999999999999


Q ss_pred             HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529          188 ITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  259 (266)
Q Consensus       188 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  259 (266)
                      ||+.+|++|||||||+|||+.++..+.+.|.++   +.|||+||||++++..+||++++|++|+++ ..|+.+++
T Consensus       409 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~-~~~~~~~~  482 (501)
T PRK10762        409 GLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRIS-GEFTREQA  482 (501)
T ss_pred             HHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEE-EEeccccC
Confidence            999999999999999999999999988887654   569999999999999999999999999986 45554443

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=4e-43  Score=295.72  Aligned_cols=183  Identities=23%  Similarity=0.313  Sum_probs=151.0

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe----------eeEEEE
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVF  124 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~i~~~  124 (266)
                      ||+++|++++|+ +..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|++++.          ..++|+
T Consensus         1 ml~~~~l~~~~~-~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~   79 (200)
T PRK13540          1 MLDVIELDFDYH-DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFV   79 (200)
T ss_pred             CEEEEEEEEEeC-CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEe
Confidence            488999999995 456999999999999999999999999999999999999999999998763          258999


Q ss_pred             eccccCCCCCCCcHHHHHHHhC-CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 024529          125 SQHHVDGLDLSSNPLLYMMRCF-PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN  203 (266)
Q Consensus       125 ~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~  203 (266)
                      +|++..  ....+..+++.... .......+.++++.+++.+ ..++++.+|||||+||++||||++.+|++|||||||+
T Consensus        80 ~q~~~~--~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~  156 (200)
T PRK13540         80 GHRSGI--NPYLTLRENCLYDIHFSPGAVGITELCRLFSLEH-LIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLV  156 (200)
T ss_pred             cccccc--CcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCch-hhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence            987532  22334444433211 1123456788999999964 4578889999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEE
Q 024529          204 HLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELW  242 (266)
Q Consensus       204 ~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~  242 (266)
                      +||+.++..+.+.|.+.   +.|||++||+.+++.. ||.-+
T Consensus       157 ~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~-~d~~~  197 (200)
T PRK13540        157 ALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNK-ADYEE  197 (200)
T ss_pred             ccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccc-cchhh
Confidence            99999999998888753   5799999999999975 77543

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=100.00  E-value=9.9e-43  Score=292.11  Aligned_cols=170  Identities=26%  Similarity=0.380  Sum_probs=141.7

Q ss_pred             cEEEEeeEEEcCC-----CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCC--CCCceEEEEcCe--------e
Q 024529           55 IISFSDASFGYPG-----GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL--QPSSGTVFRSAK--------V  119 (266)
Q Consensus        55 ~l~~~~l~~~y~~-----~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--~p~~G~i~~~~~--------~  119 (266)
                      .|+++|+++.|++     ...+|+++||+|++|++++|+||||||||||+++|+|++  +|++|+|.+++.        .
T Consensus         3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~   82 (194)
T cd03213           3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRK   82 (194)
T ss_pred             EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhh
Confidence            4899999999964     257999999999999999999999999999999999999  999999998764        2


Q ss_pred             eEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 024529          120 RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD  199 (266)
Q Consensus       120 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLD  199 (266)
                      .++|++|++.  +....+..+++...             ..+           .+|||||+||++|||||+.+|++||||
T Consensus        83 ~i~~~~q~~~--~~~~~t~~~~i~~~-------------~~~-----------~~LS~G~~qrv~laral~~~p~illlD  136 (194)
T cd03213          83 IIGYVPQDDI--LHPTLTVRETLMFA-------------AKL-----------RGLSGGERKRVSIALELVSNPSLLFLD  136 (194)
T ss_pred             eEEEccCccc--CCCCCcHHHHHHHH-------------HHh-----------ccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence            4888888753  11222333322100             000           189999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHH-HHHhhcCEEEEEeCCeEE
Q 024529          200 EPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEH-LISGSVEELWVVSEGKAT  250 (266)
Q Consensus       200 EPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~-~~~~~~d~i~~l~~G~i~  250 (266)
                      |||++||+.++..+.+.|.+.   +.|||++|||++ .+..+||++++|++|++.
T Consensus       137 EP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~  191 (194)
T cd03213         137 EPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVI  191 (194)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEE
Confidence            999999999999988887654   569999999996 688899999999999986

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1.7e-43  Score=303.24  Aligned_cols=183  Identities=25%  Similarity=0.385  Sum_probs=158.0

Q ss_pred             CcEEEEeeEEEcCCC--------CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEe
Q 024529           54 PIISFSDASFGYPGG--------PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFS  125 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~--------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~  125 (266)
                      ++++++|+++.|+-+        ..+++||||+|++||++||+|+||||||||-|+|.|+++|++|+|++.++.      
T Consensus         3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~------   76 (268)
T COG4608           3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKD------   76 (268)
T ss_pred             ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcc------
Confidence            579999999999632        268999999999999999999999999999999999999999999987642      


Q ss_pred             ccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCC
Q 024529          126 QHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHL  205 (266)
Q Consensus       126 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~L  205 (266)
                         ...+.             .....+++.++|+.+|+..+..++.+++|||||+||++|||||+.+|+++++|||+|+|
T Consensus        77 ---i~~~~-------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaL  140 (268)
T COG4608          77 ---ITKLS-------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSAL  140 (268)
T ss_pred             ---hhhcc-------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhc
Confidence               00000             12234678999999999988889999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529          206 DLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  259 (266)
Q Consensus       206 D~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  259 (266)
                      |...+.++++.|.+    .+.|.+++|||+..+..+|||+.+|..|++++ .|+.+++
T Consensus       141 DvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE-~g~~~~~  197 (268)
T COG4608         141 DVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVE-IGPTEEV  197 (268)
T ss_pred             chhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeE-ecCHHHH
Confidence            99988888877754    36799999999999999999999999999974 5655554

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.9e-43  Score=332.79  Aligned_cols=205  Identities=18%  Similarity=0.249  Sum_probs=162.1

Q ss_pred             CCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee------------
Q 024529           52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV------------  119 (266)
Q Consensus        52 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~------------  119 (266)
                      .+++|+++|+++.|   +.+|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|.+++..            
T Consensus       247 ~~~~i~~~~l~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~  323 (491)
T PRK10982        247 GEVILEVRNLTSLR---QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINH  323 (491)
T ss_pred             CCcEEEEeCccccc---CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHC
Confidence            34689999999875   248999999999999999999999999999999999999999999987632            


Q ss_pred             eEEEEecccc-CCCCCCCcH-----HHHHHHh---CC--C--CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHH
Q 024529          120 RIAVFSQHHV-DGLDLSSNP-----LLYMMRC---FP--G--VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFA  186 (266)
Q Consensus       120 ~i~~~~q~~~-~~~~~~~~~-----~~~~~~~---~~--~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lA  186 (266)
                      .++|++|++. ..+....+.     ..++...   ..  .  .....+.++++.+++.....++++.+|||||||||+||
T Consensus       324 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la  403 (491)
T PRK10982        324 GFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIG  403 (491)
T ss_pred             CCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHH
Confidence            2789998742 111111111     1111111   00  0  11345678899999953346789999999999999999


Q ss_pred             HHHccCCCEEEEeCCCCCCCHHHHHHHHHHH---hhcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          187 KITFKKPHIILLDEPSNHLDLDAVEALIQGL---VLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       187 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l---~~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      |||+.+|+||||||||+|||+.++..+++.+   .+.+.|||+||||++++..+||++++|++|+++ ..++.++|.
T Consensus       404 ~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~-~~~~~~~~~  479 (491)
T PRK10982        404 RWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVA-GIVDTKTTT  479 (491)
T ss_pred             HHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEE-EEEccccCC
Confidence            9999999999999999999999999887776   445789999999999999999999999999997 344444443

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=100.00  E-value=1.9e-42  Score=331.95  Aligned_cols=195  Identities=23%  Similarity=0.277  Sum_probs=159.9

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEEE
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV  123 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~  123 (266)
                      .++++|++|+|+++.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.           ..++|
T Consensus       322 ~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~  401 (547)
T PRK10522        322 TLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSA  401 (547)
T ss_pred             eEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEE
Confidence            5999999999975556899999999999999999999999999999999999999999998874           25899


Q ss_pred             EeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc--C--CCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 024529          124 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL--Q--PMYTLSGGQKSRVAFAKITFKKPHIILLD  199 (266)
Q Consensus       124 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~--~~~~LSgGqkqRv~lAral~~~p~lllLD  199 (266)
                      ++|++...   ..+...+    ....+++.+.++++.+++......  .  ....||||||||++|||||+++|++||||
T Consensus       402 v~q~~~lf---~~ti~~n----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililD  474 (547)
T PRK10522        402 VFTDFHLF---DQLLGPE----GKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLD  474 (547)
T ss_pred             EecChhHH---HHhhccc----cCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence            99986421   1111111    123446677888888888643211  1  14589999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChh
Q 024529          200 EPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFH  257 (266)
Q Consensus       200 EPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~  257 (266)
                      |||++||+.+...+.+.+.+    .+.|+|+|||+++.+. .||++++|++|++.+..|+..
T Consensus       475 E~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~e~~~~~~  535 (547)
T PRK10522        475 EWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFI-HADRLLEMRNGQLSELTGEER  535 (547)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHH-hCCEEEEEECCEEEEecCCch
Confidence            99999999999988877652    3679999999998876 699999999999987766643

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=6.5e-45  Score=296.59  Aligned_cols=202  Identities=22%  Similarity=0.363  Sum_probs=168.3

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee-----------eEEE
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-----------RIAV  123 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-----------~i~~  123 (266)
                      |++++||++.| +.+.+++++|++|++|.+++|+||||+||||||.+++.+.++++|+|++++..           .++.
T Consensus         1 MI~i~nv~K~y-~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSI   79 (252)
T COG4604           1 MITIENVSKSY-GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSI   79 (252)
T ss_pred             CeeehhhhHhh-CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHH
Confidence            68999999999 56789999999999999999999999999999999999999999999988753           2445


Q ss_pred             EeccccCCCCCCCcHHHHHH-HhCC-------CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 024529          124 FSQHHVDGLDLSSNPLLYMM-RCFP-------GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI  195 (266)
Q Consensus       124 ~~q~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~l  195 (266)
                      +-|++..  ....++.+... ..++       ..+...+.++++.+++. ++.++...+||||||||..||..++++.+.
T Consensus        80 LkQ~N~i--~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~-~l~dryLd~LSGGQrQRAfIAMVlaQdTdy  156 (252)
T COG4604          80 LKQENHI--NSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLE-DLSDRYLDELSGGQRQRAFIAMVLAQDTDY  156 (252)
T ss_pred             HHhhchh--hheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhccc-chHHHhHHhcccchhhhhhhheeeeccCcE
Confidence            5555421  12222222111 1111       23456788999999997 578899999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          196 ILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       196 llLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      ++||||.|+||.....++++.|++    .++||++|-||.+|+..++|+|+-|++|+++ ..|+++++.+
T Consensus       157 vlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv-~~G~~~eii~  225 (252)
T COG4604         157 VLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVV-KQGSPDEIIQ  225 (252)
T ss_pred             EEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEE-ecCCHHHhcC
Confidence            999999999999988888887754    5889999999999999999999999999996 7899998754

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=100.00  E-value=6.7e-43  Score=294.48  Aligned_cols=172  Identities=24%  Similarity=0.365  Sum_probs=142.0

Q ss_pred             EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCC--CCCCceEEEEcCee------------eE
Q 024529           56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE--LQPSSGTVFRSAKV------------RI  121 (266)
Q Consensus        56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~~~~------------~i  121 (266)
                      |+++|+++.|+ +..+|+|+||++.+||+++|+||||||||||+++|+|+  ++|++|+|.+++..            .+
T Consensus         1 l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i   79 (200)
T cd03217           1 LEIKDLHVSVG-GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGI   79 (200)
T ss_pred             CeEEEEEEEeC-CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcE
Confidence            47899999995 45799999999999999999999999999999999999  57999999987631            37


Q ss_pred             EEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 024529          122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP  201 (266)
Q Consensus       122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEP  201 (266)
                      +|++|++...  ...+                +.+.+          +....+|||||+||++|||||+.+|++||||||
T Consensus        80 ~~v~q~~~~~--~~~~----------------~~~~l----------~~~~~~LS~G~~qrv~laral~~~p~illlDEP  131 (200)
T cd03217          80 FLAFQYPPEI--PGVK----------------NADFL----------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEP  131 (200)
T ss_pred             EEeecChhhc--cCcc----------------HHHHH----------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            7888764211  1111                11111          123368999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHh-hcCEEEEEeCCeEEecCCChh
Q 024529          202 SNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISG-SVEELWVVSEGKATPFHGTFH  257 (266)
Q Consensus       202 t~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~-~~d~i~~l~~G~i~~~~g~~~  257 (266)
                      |++||+.++..+.+.|.+.   +.|||++||+++++.. +||++++|++|++. ..|+.+
T Consensus       132 t~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~-~~~~~~  190 (200)
T cd03217         132 DSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIV-KSGDKE  190 (200)
T ss_pred             CccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEE-EEccHH
Confidence            9999999999998888654   5699999999999988 79999999999996 556544

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=100.00  E-value=7.9e-43  Score=303.32  Aligned_cols=193  Identities=26%  Similarity=0.384  Sum_probs=157.1

Q ss_pred             EEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee-----------eEEEEe
Q 024529           57 SFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-----------RIAVFS  125 (266)
Q Consensus        57 ~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-----------~i~~~~  125 (266)
                      +++||++.     .+|+|+||+|++|++++|+||||||||||+++|+|+++ .+|+|.+++..           .++|++
T Consensus         2 ~~~~l~~~-----~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v~   75 (248)
T PRK03695          2 QLNDVAVS-----TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYLS   75 (248)
T ss_pred             cccccchh-----ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEec
Confidence            56788874     27899999999999999999999999999999999985 48999987741           389999


Q ss_pred             ccccCCCCCCCcHHHHHHHhCC-CC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHcc-------CC
Q 024529          126 QHHVDGLDLSSNPLLYMMRCFP-GV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK-------KP  193 (266)
Q Consensus       126 q~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~-------~p  193 (266)
                      |++...  ...+...++..... ..    ..+++.++++.+++.+ ..++++.+||||||||++|||||+.       +|
T Consensus        76 q~~~~~--~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p  152 (248)
T PRK03695         76 QQQTPP--FAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDD-KLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAG  152 (248)
T ss_pred             ccCccC--CCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHh-HhcCCcccCCHHHHHHHHHHHHHhccccccCCCC
Confidence            975322  22344444332111 11    1346788999999964 4578899999999999999999997       67


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529          194 HIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  259 (266)
Q Consensus       194 ~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  259 (266)
                      ++|||||||++||+.++..+.+.|.+.   +.|||++|||++++..+||++++|++|+++ ..|+.+++
T Consensus       153 ~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~  220 (248)
T PRK03695        153 QLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLL-ASGRRDEV  220 (248)
T ss_pred             CEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EECCHHHH
Confidence            999999999999999999988887654   569999999999999999999999999996 56777665

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=100.00  E-value=1.3e-42  Score=290.87  Aligned_cols=170  Identities=23%  Similarity=0.323  Sum_probs=141.0

Q ss_pred             cEEEEeeEEEcCC---CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCC--CCCceEEEEcCee-------eEE
Q 024529           55 IISFSDASFGYPG---GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL--QPSSGTVFRSAKV-------RIA  122 (266)
Q Consensus        55 ~l~~~~l~~~y~~---~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--~p~~G~i~~~~~~-------~i~  122 (266)
                      .|+++|+++.|++   ++.+|+++||+|++|++++|+||||||||||+++|+|++  +|++|+|.+++..       .++
T Consensus         3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~   82 (192)
T cd03232           3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTG   82 (192)
T ss_pred             EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceE
Confidence            6899999999964   256899999999999999999999999999999999986  4899999987742       588


Q ss_pred             EEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCC
Q 024529          123 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS  202 (266)
Q Consensus       123 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt  202 (266)
                      |++|++.  +....+..+++...          ..+              .+|||||+||++|||||+.+|++|||||||
T Consensus        83 ~~~q~~~--~~~~~tv~~~l~~~----------~~~--------------~~LSgGe~qrv~la~al~~~p~vlllDEP~  136 (192)
T cd03232          83 YVEQQDV--HSPNLTVREALRFS----------ALL--------------RGLSVEQRKRLTIGVELAAKPSILFLDEPT  136 (192)
T ss_pred             EecccCc--cccCCcHHHHHHHH----------HHH--------------hcCCHHHhHHHHHHHHHhcCCcEEEEeCCC
Confidence            9988753  22222343333210          000              089999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHhhc---CCEEEEEecCHH-HHHhhcCEEEEEeC-CeEE
Q 024529          203 NHLDLDAVEALIQGLVLF---QGGILMVSHDEH-LISGSVEELWVVSE-GKAT  250 (266)
Q Consensus       203 ~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~-~~~~~~d~i~~l~~-G~i~  250 (266)
                      ++||+.++..+++.+.+.   +.|||++||+.+ .+..+||++++|++ |+++
T Consensus       137 ~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~  189 (192)
T cd03232         137 SGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTV  189 (192)
T ss_pred             cCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEE
Confidence            999999999998887654   579999999998 47789999999999 9986

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=100.00  E-value=1.2e-42  Score=286.04  Aligned_cols=157  Identities=31%  Similarity=0.580  Sum_probs=133.2

Q ss_pred             EEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee-----------eEEE
Q 024529           56 ISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-----------RIAV  123 (266)
Q Consensus        56 l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-----------~i~~  123 (266)
                      |+++|+++.|++. ..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++..           .++|
T Consensus         1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   80 (171)
T cd03228           1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY   80 (171)
T ss_pred             CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence            4789999999643 268999999999999999999999999999999999999999999987742           3667


Q ss_pred             EeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 024529          124 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN  203 (266)
Q Consensus       124 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~  203 (266)
                      ++|++.  + +..+..+++                                |||||+||++|||||+.+|++|||||||+
T Consensus        81 ~~~~~~--~-~~~t~~e~l--------------------------------LS~G~~~rl~la~al~~~p~llllDEP~~  125 (171)
T cd03228          81 VPQDPF--L-FSGTIRENI--------------------------------LSGGQRQRIAIARALLRDPPILILDEATS  125 (171)
T ss_pred             EcCCch--h-ccchHHHHh--------------------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence            776642  1 111111110                                99999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCe
Q 024529          204 HLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGK  248 (266)
Q Consensus       204 ~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~  248 (266)
                      +||+.++..+.+.+.+.  +.|||++|||.+++.. ||++++|++|+
T Consensus       126 gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~~~~l~~g~  171 (171)
T cd03228         126 ALDPETEALILEALRALAKGKTVIVIAHRLSTIRD-ADRIIVLDDGR  171 (171)
T ss_pred             CCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh-CCEEEEEcCCC
Confidence            99999999998888764  4689999999999987 99999999885

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=7.6e-43  Score=346.02  Aligned_cols=204  Identities=27%  Similarity=0.419  Sum_probs=173.6

Q ss_pred             CCcEEEEeeEEEcCCCC--cceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------e
Q 024529           53 PPIISFSDASFGYPGGP--ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------V  119 (266)
Q Consensus        53 ~~~l~~~~l~~~y~~~~--~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~  119 (266)
                      ...++++||+|+||..+  .+|+++||.|++|+.++|+|||||||||++++|.+++.|++|+|.++|.           .
T Consensus       348 ~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~  427 (1228)
T KOG0055|consen  348 KGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRS  427 (1228)
T ss_pred             ccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHh
Confidence            34699999999998653  6899999999999999999999999999999999999999999999874           3


Q ss_pred             eEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHH
Q 024529          120 RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKIT  189 (266)
Q Consensus       120 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqRv~lAral  189 (266)
                      .||.+.|+|.   -+..+..+++....++...+++.++++..+..+...          ....-+||||||||+||||||
T Consensus       428 ~iglV~QePv---lF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARal  504 (1228)
T KOG0055|consen  428 QIGLVSQEPV---LFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARAL  504 (1228)
T ss_pred             hcCeeeechh---hhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHH
Confidence            6999999984   234567777766555667788888777665433221          123457999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          190 FKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       190 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      +.+|+|||||||||+||+++.+.+.+.|.+.  +.|.|+|+|++..+.+ +|+|++|++|+++ ..|+.+++..
T Consensus       505 v~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrn-aD~I~v~~~G~Iv-E~G~h~ELi~  576 (1228)
T KOG0055|consen  505 VRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRN-ADKIAVMEEGKIV-EQGTHDELIA  576 (1228)
T ss_pred             HhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhc-cCEEEEEECCEEE-EecCHHHHHh
Confidence            9999999999999999999999999998764  6799999999999997 9999999999997 5788888754

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=100.00  E-value=2.9e-42  Score=291.04  Aligned_cols=176  Identities=16%  Similarity=0.230  Sum_probs=143.0

Q ss_pred             cEEEEeeEEEcCC---CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC---CCceEEEEcCe----------
Q 024529           55 IISFSDASFGYPG---GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ---PSSGTVFRSAK----------  118 (266)
Q Consensus        55 ~l~~~~l~~~y~~---~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~~~----------  118 (266)
                      .+.++|++|.|+.   ++.+|+++||+|++|++++|+||||||||||+++|+|+++   |++|+|.+++.          
T Consensus         3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~   82 (202)
T cd03233           3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP   82 (202)
T ss_pred             eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence            5889999999963   4579999999999999999999999999999999999999   89999988764          


Q ss_pred             eeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEE
Q 024529          119 VRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILL  198 (266)
Q Consensus       119 ~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllL  198 (266)
                      ..++|++|++.  +....+..+++....      .       ..     .++++..|||||+||++|||||+.+|++|||
T Consensus        83 ~~i~~~~q~~~--~~~~~tv~~~l~~~~------~-------~~-----~~~~~~~LS~Ge~qrl~laral~~~p~llll  142 (202)
T cd03233          83 GEIIYVSEEDV--HFPTLTVRETLDFAL------R-------CK-----GNEFVRGISGGERKRVSIAEALVSRASVLCW  142 (202)
T ss_pred             ceEEEEecccc--cCCCCcHHHHHhhhh------h-------hc-----cccchhhCCHHHHHHHHHHHHHhhCCCEEEE
Confidence            24889998753  222234444432110      0       00     3467789999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHhhc----CCEEEE-EecCHHHHHhhcCEEEEEeCCeEE
Q 024529          199 DEPSNHLDLDAVEALIQGLVLF----QGGILM-VSHDEHLISGSVEELWVVSEGKAT  250 (266)
Q Consensus       199 DEPt~~LD~~~~~~l~~~l~~~----~~tiii-vtHd~~~~~~~~d~i~~l~~G~i~  250 (266)
                      ||||++||+.++..+.+.+.+.    +.++|+ ++|+.+.+..+||++++|++|+++
T Consensus       143 DEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~  199 (202)
T cd03233         143 DNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQI  199 (202)
T ss_pred             cCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEE
Confidence            9999999999999988887653    346555 556678888899999999999986

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=100.00  E-value=9e-42  Score=301.42  Aligned_cols=198  Identities=25%  Similarity=0.395  Sum_probs=155.4

Q ss_pred             CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCC
Q 024529           53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGL  132 (266)
Q Consensus        53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~  132 (266)
                      .+.|+++|+++.  + +.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++  .++|++|++... 
T Consensus        37 ~~~l~i~nls~~--~-~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g--~i~yv~q~~~l~-  110 (282)
T cd03291          37 DNNLFFSNLCLV--G-APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG--RISFSSQFSWIM-  110 (282)
T ss_pred             CCeEEEEEEEEe--c-ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC--EEEEEeCccccc-
Confidence            457999999985  2 4589999999999999999999999999999999999999999999887  589999986421 


Q ss_pred             CCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcc----------cccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCC
Q 024529          133 DLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGN----------LALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS  202 (266)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt  202 (266)
                        ..+..+++.... .....++.+.++.+++.+.          ....++.+|||||+||++|||||+.+|++|||||||
T Consensus       111 --~~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt  187 (282)
T cd03291         111 --PGTIKENIIFGV-SYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF  187 (282)
T ss_pred             --ccCHHHHhhccc-ccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence              124555443211 1122233444444444321          112345799999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHH-hh--cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          203 NHLDLDAVEALIQGL-VL--FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       203 ~~LD~~~~~~l~~~l-~~--~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      ++||+.++..+.+.+ ..  .+.|||++|||++++. .||++++|++|+++ +.|+.+++.+
T Consensus       188 ~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~~~~  247 (282)
T cd03291         188 GYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSY-FYGTFSELQS  247 (282)
T ss_pred             ccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHH-hCCEEEEEECCEEE-EECCHHHHHh
Confidence            999999998887643 32  2579999999999985 79999999999986 5788777653

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=100.00  E-value=7.2e-42  Score=326.79  Aligned_cols=186  Identities=28%  Similarity=0.471  Sum_probs=158.4

Q ss_pred             cEEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEE
Q 024529           55 IISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA  122 (266)
Q Consensus        55 ~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~  122 (266)
                      .|+++||+|+|+++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.           ..++
T Consensus       320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~  399 (529)
T TIGR02857       320 SLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIA  399 (529)
T ss_pred             eEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheE
Confidence            59999999999754 36899999999999999999999999999999999999999999998874           2599


Q ss_pred             EEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc----------CCCCCCChHHHHHHHHHHHHccC
Q 024529          123 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKITFKK  192 (266)
Q Consensus       123 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqRv~lAral~~~  192 (266)
                      |++|++..   +..+..+++....+..+++++.++++..++.+....          ....+||||||||++|||||+++
T Consensus       400 ~v~Q~~~l---f~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~  476 (529)
T TIGR02857       400 WVPQHPFL---FAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRD  476 (529)
T ss_pred             EEcCCCcc---cCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcC
Confidence            99999742   345666666543344567788888888887643322          23568999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEE
Q 024529          193 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVV  244 (266)
Q Consensus       193 p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l  244 (266)
                      |++|||||||++||+.+.+.+.+.+.+.  +.|+|+|||+++.+. .||+|++|
T Consensus       477 ~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~i~~l  529 (529)
T TIGR02857       477 APLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAE-RADRIVVL  529 (529)
T ss_pred             CCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH-hCCEEEeC
Confidence            9999999999999999999999988875  579999999999986 69999875

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=100.00  E-value=2.8e-42  Score=295.34  Aligned_cols=181  Identities=30%  Similarity=0.454  Sum_probs=148.5

Q ss_pred             EEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------eeEEEEeccccCCCCCCCcHHHHHHHh-----
Q 024529           77 FGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------VRIAVFSQHHVDGLDLSSNPLLYMMRC-----  145 (266)
Q Consensus        77 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------~~i~~~~q~~~~~~~~~~~~~~~~~~~-----  145 (266)
                      |+|++||+++|+||||||||||+++|+|+++|++|+|.+++.      ..++|++|++........+...++...     
T Consensus         1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~   80 (223)
T TIGR03771         1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHI   80 (223)
T ss_pred             CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccc
Confidence            578999999999999999999999999999999999999875      359999998632222223444433211     


Q ss_pred             --C--C-CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc
Q 024529          146 --F--P-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF  220 (266)
Q Consensus       146 --~--~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~  220 (266)
                        .  . ....+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.+.+.+.
T Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~  159 (223)
T TIGR03771        81 GWLRRPCVADFAAVRDALRRVGLTE-LADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIEL  159 (223)
T ss_pred             ccccCCcHHHHHHHHHHHHHhCCch-hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence              0  0 112345788899999974 457788999999999999999999999999999999999999999998888653


Q ss_pred             ---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          221 ---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       221 ---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                         +.|||++|||++++..+||+++++ +|+++ ..|+.+++.
T Consensus       160 ~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~-~~~~~~~~~  200 (223)
T TIGR03771       160 AGAGTAILMTTHDLAQAMATCDRVVLL-NGRVI-ADGTPQQLQ  200 (223)
T ss_pred             HHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEE-eecCHHHhc
Confidence               569999999999999999999999 79996 678877763

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=100.00  E-value=4.5e-42  Score=317.76  Aligned_cols=194  Identities=22%  Similarity=0.324  Sum_probs=164.7

Q ss_pred             CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee------------e
Q 024529           53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV------------R  120 (266)
Q Consensus        53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~------------~  120 (266)
                      .++++++|++|+|+ +..+|++|||++.+||++||+|.||||||||+|+|+|.++|++|+|+++|+.            .
T Consensus         6 ~~ll~~~~i~K~Fg-gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G   84 (500)
T COG1129           6 PPLLELRGISKSFG-GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG   84 (500)
T ss_pred             cceeeeecceEEcC-CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence            45899999999995 5679999999999999999999999999999999999999999999998862            5


Q ss_pred             EEEEeccccCCCCCCCcHHHHHHHhC-C-----CC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 024529          121 IAVFSQHHVDGLDLSSNPLLYMMRCF-P-----GV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF  190 (266)
Q Consensus       121 i~~~~q~~~~~~~~~~~~~~~~~~~~-~-----~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~  190 (266)
                      |..++|+..  +....++.+++.... +     -.    ..+++.++|+.+++... .+.++.+||.||||.|+|||||.
T Consensus        85 I~~V~QEl~--L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~-~~~~v~~LsiaqrQ~VeIArAl~  161 (500)
T COG1129          85 IATVHQELS--LVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDID-PDTLVGDLSIAQRQMVEIARALS  161 (500)
T ss_pred             cEEEeechh--ccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCC-hhhhhhhCCHHHHHHHHHHHHHh
Confidence            899999864  233344555543211 0     11    23567888999998633 67899999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHh---hcCCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529          191 KKPHIILLDEPSNHLDLDAVEALIQGLV---LFQGGILMVSHDEHLISGSVEELWVVSEGKAT  250 (266)
Q Consensus       191 ~~p~lllLDEPt~~LD~~~~~~l~~~l~---~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~  250 (266)
                      .+++||||||||++|+....+.+++.++   +.+.+||+|||.++++..+||||.||.+|+.+
T Consensus       162 ~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v  224 (500)
T COG1129         162 FDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVV  224 (500)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEe
Confidence            9999999999999999998888777665   45679999999999999999999999999986

>PRK13409 putative ATPase RIL; Provisional

Probab=100.00  E-value=2.8e-42  Score=331.83  Aligned_cols=191  Identities=26%  Similarity=0.305  Sum_probs=160.8

Q ss_pred             CCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCC
Q 024529           52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDG  131 (266)
Q Consensus        52 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~  131 (266)
                      +.++++++|+++.|+ +. .|+++||+|.+||+++|+||||||||||+|+|+|+++|++|+|.++  ..++|++|+... 
T Consensus       337 ~~~~l~~~~ls~~~~-~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~--~~i~y~~Q~~~~-  411 (590)
T PRK13409        337 RETLVEYPDLTKKLG-DF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE--LKISYKPQYIKP-  411 (590)
T ss_pred             CceEEEEcceEEEEC-CE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe--eeEEEecccccC-
Confidence            356899999999995 33 5899999999999999999999999999999999999999999876  579999998642 


Q ss_pred             CCCCCcHHHHHHHhCCC-CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH
Q 024529          132 LDLSSNPLLYMMRCFPG-VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAV  210 (266)
Q Consensus       132 ~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~  210 (266)
                       ....++.+++...... .....+.++++.+++. ...++++.+|||||||||+|||||+.+|++|||||||+|||+.++
T Consensus       412 -~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~-~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~  489 (590)
T PRK13409        412 -DYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLE-RLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQR  489 (590)
T ss_pred             -CCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCH-HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence             2334455444321111 1234567899999997 457889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529          211 EALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKAT  250 (266)
Q Consensus       211 ~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~  250 (266)
                      ..+.+.|+++    +.|||+||||++++..+||++++|++ ++.
T Consensus       490 ~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~  532 (590)
T PRK13409        490 LAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPG  532 (590)
T ss_pred             HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cce
Confidence            9998888754    67999999999999999999999965 653

>PLN03232 ABC transporter C family member; Provisional

Probab=100.00  E-value=1.1e-41  Score=356.28  Aligned_cols=202  Identities=18%  Similarity=0.296  Sum_probs=171.3

Q ss_pred             CcEEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeE
Q 024529           54 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI  121 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i  121 (266)
                      ..|+++||+++|+++ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.           .++
T Consensus      1233 g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i 1312 (1495)
T PLN03232       1233 GSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVL 1312 (1495)
T ss_pred             CcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhc
Confidence            359999999999543 57999999999999999999999999999999999999999999999874           369


Q ss_pred             EEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc----------CCCCCCChHHHHHHHHHHHHcc
Q 024529          122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKITFK  191 (266)
Q Consensus       122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqRv~lAral~~  191 (266)
                      +++||++..   +..+..+++.. ....+++++.++++..++.+....          .....||||||||++|||||++
T Consensus      1313 ~iVpQdp~L---F~gTIr~NL~~-~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr 1388 (1495)
T PLN03232       1313 SIIPQSPVL---FSGTVRFNIDP-FSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLR 1388 (1495)
T ss_pred             EEECCCCee---eCccHHHHcCC-CCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHh
Confidence            999999753   23456665532 224567788889988887543322          2346899999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          192 KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      +|+|||||||||+||+++...+.+.+++.  +.|+|+|+|+++.+.. ||+|++|++|+++ ..|+++++.+
T Consensus      1389 ~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~DrIlVL~~G~iv-E~Gt~~eLl~ 1458 (1495)
T PLN03232       1389 RSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIID-CDKILVLSSGQVL-EYDSPQELLS 1458 (1495)
T ss_pred             CCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-CCEEEEEECCEEE-EECCHHHHHh
Confidence            99999999999999999999999988764  5799999999999986 9999999999997 4688888754

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=100.00  E-value=8.1e-42  Score=357.63  Aligned_cols=207  Identities=22%  Similarity=0.291  Sum_probs=174.1

Q ss_pred             CCcEEEEeeEEEcC-CCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe----------eeE
Q 024529           53 PPIISFSDASFGYP-GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRI  121 (266)
Q Consensus        53 ~~~l~~~~l~~~y~-~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~i  121 (266)
                      ...|+++||++.|+ +++.+++|+||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.          ..+
T Consensus       926 ~~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~I 1005 (2272)
T TIGR01257       926 VPGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSL 1005 (2272)
T ss_pred             CceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcE
Confidence            45799999999995 3467999999999999999999999999999999999999999999998774          258


Q ss_pred             EEEeccccCCCCCCCcHHHHHH--HhCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 024529          122 AVFSQHHVDGLDLSSNPLLYMM--RCFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI  195 (266)
Q Consensus       122 ~~~~q~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~l  195 (266)
                      ||++|++...  ...++.+.+.  ....+.    .++++.++++.+++.+ ..++++++|||||||||+||+||+.+|+|
T Consensus      1006 G~~pQ~~~L~--~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~-~~~~~~~~LSGGqKQRLsLArALi~~PkV 1082 (2272)
T TIGR01257      1006 GMCPQHNILF--HHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHH-KRNEEAQDLSGGMQRKLSVAIAFVGDAKV 1082 (2272)
T ss_pred             EEEecCCcCC--CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence            9999986422  2233433332  111122    2356788999999974 56788999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHHHH
Q 024529          196 ILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKML  263 (266)
Q Consensus       196 llLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~  263 (266)
                      |||||||+|||+.+++.+++.|++.  +.|||++|||++++..+|||+++|++|+++ ..|+.+++.+..
T Consensus      1083 LLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~-~~Gs~~~Lk~~~ 1151 (2272)
T TIGR01257      1083 VVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLY-CSGTPLFLKNCF 1151 (2272)
T ss_pred             EEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EecCHHHHHHhc
Confidence            9999999999999999999888765  569999999999999999999999999996 679988876543

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=100.00  E-value=1.1e-41  Score=354.20  Aligned_cols=203  Identities=23%  Similarity=0.339  Sum_probs=172.9

Q ss_pred             cEEEEeeEEEcCC--CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC------------------------
Q 024529           55 IISFSDASFGYPG--GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP------------------------  108 (266)
Q Consensus        55 ~l~~~~l~~~y~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p------------------------  108 (266)
                      .|+++||+|+|++  +.++|+|+||+|++|+++||+||||||||||+++|+|+++|                        
T Consensus      1165 ~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~ 1244 (1466)
T PTZ00265       1165 KIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQG 1244 (1466)
T ss_pred             eEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccc
Confidence            5999999999974  24699999999999999999999999999999999999998                        


Q ss_pred             ------------------------------CceEEEEcCe-----------eeEEEEeccccCCCCCCCcHHHHHHHhCC
Q 024529          109 ------------------------------SSGTVFRSAK-----------VRIAVFSQHHVDGLDLSSNPLLYMMRCFP  147 (266)
Q Consensus       109 ------------------------------~~G~i~~~~~-----------~~i~~~~q~~~~~~~~~~~~~~~~~~~~~  147 (266)
                                                    ++|+|.++|.           ..++|++|++..   +..+..+++....+
T Consensus      1245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~L---F~gTIreNI~~g~~ 1321 (1466)
T PTZ00265       1245 DEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPML---FNMSIYENIKFGKE 1321 (1466)
T ss_pred             ccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcc---ccccHHHHHhcCCC
Confidence                                          6999999874           359999999753   34567777765444


Q ss_pred             CCcHHHHHHHHHhcCCCccccc----------CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 024529          148 GVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL  217 (266)
Q Consensus       148 ~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l  217 (266)
                      ..+++++.++++..++++....          .....||||||||++|||||+++|+|||||||||+||+++.+.+.+.|
T Consensus      1322 ~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L 1401 (1466)
T PTZ00265       1322 DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTI 1401 (1466)
T ss_pred             CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHH
Confidence            5678889999988887543322          234679999999999999999999999999999999999999999988


Q ss_pred             hhc----CCEEEEEecCHHHHHhhcCEEEEEeC----CeEEecCCChhHHHH
Q 024529          218 VLF----QGGILMVSHDEHLISGSVEELWVVSE----GKATPFHGTFHDYKK  261 (266)
Q Consensus       218 ~~~----~~tiiivtHd~~~~~~~~d~i~~l~~----G~i~~~~g~~~~~~~  261 (266)
                      .+.    +.|+|+|||+++.+. .||+|++|++    |+++...|+.+++.+
T Consensus      1402 ~~~~~~~~~TvIiIaHRlsti~-~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265       1402 VDIKDKADKTIITIAHRIASIK-RSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred             HHHhccCCCEEEEEechHHHHH-hCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence            765    569999999999987 5999999999    896546799888764

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=100.00  E-value=8e-42  Score=357.69  Aligned_cols=207  Identities=23%  Similarity=0.310  Sum_probs=172.6

Q ss_pred             CCcEEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe----------eeE
Q 024529           53 PPIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRI  121 (266)
Q Consensus        53 ~~~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~i  121 (266)
                      ..+|+++|+++.|+++ +.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|.          ..+
T Consensus      1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~I 2014 (2272)
T TIGR01257      1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNM 2014 (2272)
T ss_pred             CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhE
Confidence            4579999999999642 57999999999999999999999999999999999999999999998773          249


Q ss_pred             EEEeccccCCCCCCCcHHHHHH--HhCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 024529          122 AVFSQHHVDGLDLSSNPLLYMM--RCFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI  195 (266)
Q Consensus       122 ~~~~q~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~l  195 (266)
                      ||++|.....  ...+..+.+.  ....+..    ++.+.++++.+++.+ ..++++++|||||||||+||+||+.+|+|
T Consensus      2015 Gy~pQ~~~L~--~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~-~~dk~~~~LSGGqKqRLslA~ALi~~P~V 2091 (2272)
T TIGR01257      2015 GYCPQFDAID--DLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSL-YADRLAGTYSGGNKRKLSTAIALIGCPPL 2091 (2272)
T ss_pred             EEEeccccCC--CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHH-HhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence            9999985322  2223333321  1111222    234667899999974 56789999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHHHH
Q 024529          196 ILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKML  263 (266)
Q Consensus       196 llLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~  263 (266)
                      |||||||+|||+.+++.+++.+.+.   +.|||++||++++++.+|||+++|++|+++ ..|+.+++....
T Consensus      2092 LLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~-~~Gs~q~Lk~~~ 2161 (2272)
T TIGR01257      2092 VLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQ-CLGTIQHLKSKF 2161 (2272)
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHHHHHh
Confidence            9999999999999999998877653   569999999999999999999999999997 679988876543

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=100.00  E-value=1.4e-41  Score=326.32  Aligned_cols=190  Identities=18%  Similarity=0.208  Sum_probs=155.6

Q ss_pred             CcEEEEeeEEEcCCC----CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------
Q 024529           54 PIISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------  118 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------  118 (266)
                      ..|+++||+|+|++.    +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.+++.           
T Consensus       336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~  415 (555)
T TIGR01194       336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYR  415 (555)
T ss_pred             ceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHH
Confidence            359999999999642    25899999999999999999999999999999999999999999998874           


Q ss_pred             eeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCC-----CCCCChHHHHHHHHHHHHccCC
Q 024529          119 VRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQP-----MYTLSGGQKSRVAFAKITFKKP  193 (266)
Q Consensus       119 ~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGqkqRv~lAral~~~p  193 (266)
                      ..++|++|++...   ..+...+.   .+...++++.++++.+++.+.....|     ...||||||||++||||++.+|
T Consensus       416 ~~i~~v~q~~~lf---~~ti~~n~---~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~  489 (555)
T TIGR01194       416 DLFSAIFADFHLF---DDLIGPDE---GEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDR  489 (555)
T ss_pred             hhCcEEccChhhh---hhhhhccc---ccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCC
Confidence            2488999986421   11111111   12345677888999999875433222     3579999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHh----hcCCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529          194 HIILLDEPSNHLDLDAVEALIQGLV----LFQGGILMVSHDEHLISGSVEELWVVSEGKAT  250 (266)
Q Consensus       194 ~lllLDEPt~~LD~~~~~~l~~~l~----~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~  250 (266)
                      ++|||||||++||+.+.+.+.+.+.    ..+.|+|+|||+++.+. .||+|++|++|+++
T Consensus       490 ~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~-~~d~i~~l~~G~i~  549 (555)
T TIGR01194       490 PILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFE-LADQIIKLAAGCIV  549 (555)
T ss_pred             CEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEE
Confidence            9999999999999999998876542    34679999999998775 79999999999986

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PLN03130 ABC transporter C family member; Provisional

Probab=100.00  E-value=2.2e-41  Score=354.69  Aligned_cols=202  Identities=18%  Similarity=0.282  Sum_probs=171.5

Q ss_pred             CcEEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeE
Q 024529           54 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI  121 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i  121 (266)
                      ..|+++||+++|+++ +++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.++|.           .++
T Consensus      1236 g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~I 1315 (1622)
T PLN03130       1236 GSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVL 1315 (1622)
T ss_pred             CcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhcc
Confidence            469999999999644 46999999999999999999999999999999999999999999999884           469


Q ss_pred             EEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc----------CCCCCCChHHHHHHHHHHHHcc
Q 024529          122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKITFK  191 (266)
Q Consensus       122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqRv~lAral~~  191 (266)
                      +++||++..   +..+..+++... ...+++++.++++..++.+....          .....||||||||++|||||++
T Consensus      1316 siVpQdp~L---F~GTIreNLd~~-~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr 1391 (1622)
T PLN03130       1316 GIIPQAPVL---FSGTVRFNLDPF-NEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLR 1391 (1622)
T ss_pred             EEECCCCcc---ccccHHHHhCcC-CCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHc
Confidence            999999752   234566665322 24567788899988877543322          2245899999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          192 KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      +|+|||||||||+||.++...+.+.|++.  ++|+|+|+|+++.+.. ||+|++|++|+++ ..|+++++.+
T Consensus      1392 ~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~-~DrIlVLd~G~Iv-E~Gt~~eLl~ 1461 (1622)
T PLN03130       1392 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILVLDAGRVV-EFDTPENLLS 1461 (1622)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHh-CCEEEEEECCEEE-EeCCHHHHHh
Confidence            99999999999999999999999998764  5799999999999985 9999999999997 4688888754

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.7e-42  Score=280.15  Aligned_cols=194  Identities=26%  Similarity=0.383  Sum_probs=160.1

Q ss_pred             CcEEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee------eEEEEec
Q 024529           54 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV------RIAVFSQ  126 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~------~i~~~~q  126 (266)
                      +++.+++++.+|++. ..+|+|+|++|.+||.++++|||||||||||++++|+.+|+.|+|..+++.      .-|.+||
T Consensus         2 ~~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ   81 (259)
T COG4525           2 CMLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQ   81 (259)
T ss_pred             ceeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEec
Confidence            467889999999643 248999999999999999999999999999999999999999999988863      5789999


Q ss_pred             cccCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 024529          127 HHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE  200 (266)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDE  200 (266)
                      +..  +....+..++....  ..+.    ..+.+.+.+..+|+.+ ..++.+-+||||||||+.|||||+.+|++|+|||
T Consensus        82 ~~~--LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~-~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDE  158 (259)
T COG4525          82 NEA--LLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEG-AEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDE  158 (259)
T ss_pred             cCc--cchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCccc-ccccceEeecchHHHHHHHHHHhhcCcceEeecC
Confidence            863  22333444443211  1122    2345677899999975 4578899999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHh----hcCCEEEEEecCHHHHHhhcCEEEEEeC--CeEE
Q 024529          201 PSNHLDLDAVEALIQGLV----LFQGGILMVSHDEHLISGSVEELWVVSE--GKAT  250 (266)
Q Consensus       201 Pt~~LD~~~~~~l~~~l~----~~~~tiiivtHd~~~~~~~~d~i~~l~~--G~i~  250 (266)
                      |+++||.-+++.+.+.|.    +.++.+++||||.+++.-+++++++|+.  |+++
T Consensus       159 PfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv  214 (259)
T COG4525         159 PFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVV  214 (259)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceee
Confidence            999999999887766553    4577899999999999999999999985  6775

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.2e-42  Score=292.78  Aligned_cols=200  Identities=29%  Similarity=0.450  Sum_probs=161.7

Q ss_pred             CCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------e
Q 024529           52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------V  119 (266)
Q Consensus        52 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~  119 (266)
                      .+++|+++|+++.| +++.+|+|+|++|++||..+|+|||||||||||++++|.++|++|.+...|+            .
T Consensus        28 ~~~li~l~~v~v~r-~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk  106 (257)
T COG1119          28 NEPLIELKNVSVRR-NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRK  106 (257)
T ss_pred             CcceEEecceEEEE-CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHH
Confidence            45689999999999 5678999999999999999999999999999999999999999999876553            3


Q ss_pred             eEEEEeccccCCCCCCCcHHHHHH-------HhCC-C---CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHH
Q 024529          120 RIAVFSQHHVDGLDLSSNPLLYMM-------RCFP-G---VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKI  188 (266)
Q Consensus       120 ~i~~~~q~~~~~~~~~~~~~~~~~-------~~~~-~---~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAra  188 (266)
                      +||++.......+....+..+.+.       ..+. .   ...+++..+++.+|+.. +.+++..+||-||||||.||||
T Consensus       107 ~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~-la~r~~~~LS~Ge~rrvLiaRA  185 (257)
T COG1119         107 RIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKH-LADRPFGSLSQGEQRRVLIARA  185 (257)
T ss_pred             HhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhh-hccCchhhcCHhHHHHHHHHHH
Confidence            577776432111111111111110       0111 1   23456788899999974 7889999999999999999999


Q ss_pred             HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC-----CEEEEEecCHHHHHhhcCEEEEEeCCeEEecCC
Q 024529          189 TFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQ-----GGILMVSHDEHLISGSVEELWVVSEGKATPFHG  254 (266)
Q Consensus       189 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-----~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g  254 (266)
                      |+.+|++|||||||+|||...++.+.+.|.+..     .++|+|||..+++..+.++++.+++|+++ +.|
T Consensus       186 Lv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~-~~g  255 (257)
T COG1119         186 LVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVV-AQG  255 (257)
T ss_pred             HhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCcee-ecc
Confidence            999999999999999999999999988887642     36999999999999999999999999996 444

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=100.00  E-value=3.2e-42  Score=287.89  Aligned_cols=165  Identities=34%  Similarity=0.518  Sum_probs=133.6

Q ss_pred             CCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-------------eeEEEEeccccCCCC
Q 024529           67 GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------VRIAVFSQHHVDGLD  133 (266)
Q Consensus        67 ~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------~~i~~~~q~~~~~~~  133 (266)
                      +++.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.             ..++|++|++...+.
T Consensus         3 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~   82 (190)
T TIGR01166         3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF   82 (190)
T ss_pred             CccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccc
Confidence            4556899999999999999999999999999999999999999999987663             148999998621111


Q ss_pred             CCCcHHHHHHHh--CCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCH
Q 024529          134 LSSNPLLYMMRC--FPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL  207 (266)
Q Consensus       134 ~~~~~~~~~~~~--~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~  207 (266)
                       ..+..+++...  .....    .+++.++++.+++.+ ..++++.+|||||+||++|||||+.+|++|||||||++||+
T Consensus        83 -~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~  160 (190)
T TIGR01166        83 -AADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASG-LRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDP  160 (190)
T ss_pred             -cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchh-hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence             22444443211  11111    245778899999974 56788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhc---CCEEEEEecCHHH
Q 024529          208 DAVEALIQGLVLF---QGGILMVSHDEHL  233 (266)
Q Consensus       208 ~~~~~l~~~l~~~---~~tiiivtHd~~~  233 (266)
                      .++..+.+.|.+.   +.|||+||||+++
T Consensus       161 ~~~~~~~~~l~~~~~~~~tili~sH~~~~  189 (190)
T TIGR01166       161 AGREQMLAILRRLRAEGMTVVISTHDVDL  189 (190)
T ss_pred             HHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence            9999988887654   5699999999875

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=100.00  E-value=2.5e-41  Score=329.83  Aligned_cols=188  Identities=23%  Similarity=0.339  Sum_probs=160.2

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCC
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD  133 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~  133 (266)
                      .+|+++|+++.|++++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|..+++..++|++|++...  
T Consensus       450 ~~i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~--  527 (659)
T TIGR00954       450 NGIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMT--  527 (659)
T ss_pred             CeEEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCC--
Confidence            469999999999655579999999999999999999999999999999999999999999988777899999987422  


Q ss_pred             CCCcHHHHHHHhC-------CCCcHHHHHHHHHhcCCCcccccCC---------CCCCChHHHHHHHHHHHHccCCCEEE
Q 024529          134 LSSNPLLYMMRCF-------PGVPEQKLRAHLGSFGVTGNLALQP---------MYTLSGGQKSRVAFAKITFKKPHIIL  197 (266)
Q Consensus       134 ~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~~---------~~~LSgGqkqRv~lAral~~~p~lll  197 (266)
                       ..+..+++....       .....+++.++++.+++.+. .+++         ..+||||||||++|||||+.+|+++|
T Consensus       528 -~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~-~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~ill  605 (659)
T TIGR00954       528 -LGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHI-LEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAI  605 (659)
T ss_pred             -CcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHH-HhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEE
Confidence             225555543211       12346678889999998653 3333         37899999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcCEEEEEeC
Q 024529          198 LDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSE  246 (266)
Q Consensus       198 LDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~  246 (266)
                      |||||++||+.+...+.+.+++.+.|+|+|||+++.+. +||++++|+.
T Consensus       606 LDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~~-~~d~il~l~~  653 (659)
T TIGR00954       606 LDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLWK-YHEYLLYMDG  653 (659)
T ss_pred             EeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCchHHHH-hCCEEEEEeC
Confidence            99999999999999999999888889999999999875 7999999963

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=8.7e-42  Score=286.50  Aligned_cols=181  Identities=26%  Similarity=0.327  Sum_probs=146.8

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-------eeEEEEecc
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------VRIAVFSQH  127 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------~~i~~~~q~  127 (266)
                      +|+++|++++|+ ++.+++ +||+|++||+++|+|+||||||||+++|+|+++|++|+|.+++.       ..++|++|.
T Consensus         1 ~l~~~~l~~~~~-~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~   78 (195)
T PRK13541          1 MLSLHQLQFNIE-QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHN   78 (195)
T ss_pred             CeEEEEeeEEEC-CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCC
Confidence            478999999995 455555 99999999999999999999999999999999999999998874       247888887


Q ss_pred             ccCCCCCCCcHHHHHHHhCC-CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q 024529          128 HVDGLDLSSNPLLYMMRCFP-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD  206 (266)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD  206 (266)
                      +.  +....+..+++..... ....+++.++++.+++.+ ..++++.+|||||+||++||||++.+|++|||||||++||
T Consensus        79 ~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD  155 (195)
T PRK13541         79 LG--LKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHD-LLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLS  155 (195)
T ss_pred             cC--CCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHh-hhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence            52  2233344444422110 113456778889999964 4578899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhh---cCCEEEEEecCHHHHHhhcCEE
Q 024529          207 LDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEEL  241 (266)
Q Consensus       207 ~~~~~~l~~~l~~---~~~tiiivtHd~~~~~~~~d~i  241 (266)
                      +.++..+.+.+.+   .+.|||++||+.+++.. +|-+
T Consensus       156 ~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~-~~~~  192 (195)
T PRK13541        156 KENRDLLNNLIVMKANSGGIVLLSSHLESSIKS-AQIL  192 (195)
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEEeCCccccch-hhee
Confidence            9999998887753   35799999999998875 6654

>PLN03073 ABC transporter F family; Provisional

Probab=100.00  E-value=1.8e-41  Score=331.96  Aligned_cols=208  Identities=23%  Similarity=0.382  Sum_probs=159.7

Q ss_pred             CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCC---CCCceEEEEcCeee---------
Q 024529           53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL---QPSSGTVFRSAKVR---------  120 (266)
Q Consensus        53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~~~~~---------  120 (266)
                      ..+|+++|++++|+ +..+|+|+||+|.+|+++||+||||||||||||+|+|..   .|++|+|.+..+..         
T Consensus       175 ~~~I~i~nls~~y~-~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~  253 (718)
T PLN03073        175 IKDIHMENFSISVG-GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQ  253 (718)
T ss_pred             ceeEEEceEEEEeC-CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHH
Confidence            45799999999995 456999999999999999999999999999999999964   46777764321100         


Q ss_pred             ----------------EEEEeccccCCC-CC------------CCcH----HHHHHH---hC-CCCcHHHHHHHHHhcCC
Q 024529          121 ----------------IAVFSQHHVDGL-DL------------SSNP----LLYMMR---CF-PGVPEQKLRAHLGSFGV  163 (266)
Q Consensus       121 ----------------i~~~~q~~~~~~-~~------------~~~~----~~~~~~---~~-~~~~~~~~~~~l~~~~l  163 (266)
                                      +++++|.+.... ..            ....    +.....   .. ....+.++.++|..+|+
T Consensus       254 ~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl  333 (718)
T PLN03073        254 CVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSF  333 (718)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCC
Confidence                            111111100000 00            0000    000000   00 00124566778888998


Q ss_pred             CcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcCEEEE
Q 024529          164 TGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWV  243 (266)
Q Consensus       164 ~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d~i~~  243 (266)
                      .+...++++.+|||||||||+||+||+.+|++|||||||+|||+.++.++.+.|++++.|||+||||++++..+||++++
T Consensus       334 ~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~l~~~~d~i~~  413 (718)
T PLN03073        334 TPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNTVVTDILH  413 (718)
T ss_pred             ChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEE
Confidence            65556788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCeEEecCCChhHHHH
Q 024529          244 VSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       244 l~~G~i~~~~g~~~~~~~  261 (266)
                      |++|++..+.|+++.|.+
T Consensus       414 l~~g~i~~~~g~~~~~~~  431 (718)
T PLN03073        414 LHGQKLVTYKGDYDTFER  431 (718)
T ss_pred             EECCEEEEeCCCHHHHHH
Confidence            999999778999988754

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=100.00  E-value=1.2e-41  Score=280.88  Aligned_cols=155  Identities=25%  Similarity=0.298  Sum_probs=132.3

Q ss_pred             EeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcH
Q 024529           59 SDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNP  138 (266)
Q Consensus        59 ~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~  138 (266)
                      .|+++.|+ +..++++ +|+|++||+++|+||||||||||+|+|+|+++|++|+|.+++. .++|++|...         
T Consensus         4 ~~l~~~~~-~~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~-~i~~~~q~~~---------   71 (177)
T cd03222           4 PDCVKRYG-VFFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI-TPVYKPQYID---------   71 (177)
T ss_pred             CCeEEEEC-CEEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCE-EEEEEcccCC---------
Confidence            58899995 4567888 4999999999999999999999999999999999999998764 4777776421         


Q ss_pred             HHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHh
Q 024529          139 LLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV  218 (266)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~  218 (266)
                                                          ||||||||++|||||+.+|+++||||||++||+.++..+.+.+.
T Consensus        72 ------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~  115 (177)
T cd03222          72 ------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIR  115 (177)
T ss_pred             ------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence                                                99999999999999999999999999999999999998888776


Q ss_pred             hc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEE-ecCCChhHHHH
Q 024529          219 LF----QGGILMVSHDEHLISGSVEELWVVSEGKAT-PFHGTFHDYKK  261 (266)
Q Consensus       219 ~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~-~~~g~~~~~~~  261 (266)
                      +.    +.|||+||||++++..+||++++|+++..+ ...|++..+++
T Consensus       116 ~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~~  163 (177)
T cd03222         116 RLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPKGTRE  163 (177)
T ss_pred             HHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCcchhH
Confidence            53    369999999999999999999999886543 22255544443

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=100.00  E-value=2.5e-41  Score=307.82  Aligned_cols=193  Identities=21%  Similarity=0.347  Sum_probs=166.2

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------eeE
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI  121 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~i  121 (266)
                      +.+++++++|.|+ +..++++|||+|++||+.||+|+||+|||||+++|.|+++|++|+|+++|+            ..|
T Consensus         3 ~~l~~~~itK~f~-~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GI   81 (501)
T COG3845           3 PALEMRGITKRFP-GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGI   81 (501)
T ss_pred             ceEEEeccEEEcC-CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCC
Confidence            4689999999996 677999999999999999999999999999999999999999999999986            359


Q ss_pred             EEEeccccCCCCCCCcHHHHHHHhCC-----C----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccC
Q 024529          122 AVFSQHHVDGLDLSSNPLLYMMRCFP-----G----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK  192 (266)
Q Consensus       122 ~~~~q~~~~~~~~~~~~~~~~~~~~~-----~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~  192 (266)
                      |+++|++...  .+.++.+++.....     .    ...+++.++.+++|++-+ .+.++.+||-||||||.|.+||.++
T Consensus        82 GMVhQHF~Lv--~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vd-p~~~V~dLsVG~qQRVEIlKaLyr~  158 (501)
T COG3845          82 GMVHQHFMLV--PTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVD-PDAKVADLSVGEQQRVEILKALYRG  158 (501)
T ss_pred             cEEeeccccc--cccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCC-ccceeecCCcchhHHHHHHHHHhcC
Confidence            9999997432  23344444432211     1    235678888999999744 5689999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529          193 PHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKAT  250 (266)
Q Consensus       193 p~lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~  250 (266)
                      |++|||||||+-|-|...+++++.+++   .++|||+|||.++++.++|||+.+|..|+++
T Consensus       159 a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvv  219 (501)
T COG3845         159 ARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVV  219 (501)
T ss_pred             CCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEE
Confidence            999999999999999999998887764   4789999999999999999999999999975

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=9.5e-43  Score=277.37  Aligned_cols=193  Identities=22%  Similarity=0.343  Sum_probs=158.5

Q ss_pred             EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEEEE
Q 024529           56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAVF  124 (266)
Q Consensus        56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~~  124 (266)
                      ++++++.+.- ++.++|+++||++.+||+++|+||||||||||+|+++-++.|++|++++.|.           ..++|+
T Consensus         4 le~kq~~y~a-~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~   82 (223)
T COG4619           4 LELKQVGYLA-GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYC   82 (223)
T ss_pred             hHHHHHHhhc-CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHH
Confidence            4556665444 3457999999999999999999999999999999999999999999999875           357888


Q ss_pred             eccccCC-CCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 024529          125 SQHHVDG-LDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN  203 (266)
Q Consensus       125 ~q~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~  203 (266)
                      .|.+... -++..|............+...+...++++++.+....+++.+||||||||++|+|-|..-|+|||||||||
T Consensus        83 ~Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~Ts  162 (223)
T COG4619          83 AQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITS  162 (223)
T ss_pred             HcCccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchh
Confidence            8886421 112222211111122245677788999999999888999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeE
Q 024529          204 HLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKA  249 (266)
Q Consensus       204 ~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i  249 (266)
                      +||+.+.+.+.+.+..+    ..+++.||||.+...+.+|+++.+..|++
T Consensus       163 ALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~  212 (223)
T COG4619         163 ALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA  212 (223)
T ss_pred             hcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence            99999988877766543    56899999999998889999999999876

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=100.00  E-value=6.9e-41  Score=350.62  Aligned_cols=202  Identities=18%  Similarity=0.279  Sum_probs=171.0

Q ss_pred             CcEEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeE
Q 024529           54 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI  121 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i  121 (266)
                      ..|+++||+++|+++ ..+|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.++|.           .++
T Consensus      1283 g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i 1362 (1522)
T TIGR00957      1283 GRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKI 1362 (1522)
T ss_pred             CcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcC
Confidence            469999999999654 46999999999999999999999999999999999999999999999884           369


Q ss_pred             EEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc----------CCCCCCChHHHHHHHHHHHHcc
Q 024529          122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKITFK  191 (266)
Q Consensus       122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqRv~lAral~~  191 (266)
                      +++||++..   +..+..+++.. +...+++++.++++.+++.+....          .....||||||||++|||||++
T Consensus      1363 ~iVpQdp~L---F~gTIr~NLdp-~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr 1438 (1522)
T TIGR00957      1363 TIIPQDPVL---FSGSLRMNLDP-FSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLR 1438 (1522)
T ss_pred             eEECCCCcc---cCccHHHHcCc-ccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHc
Confidence            999999752   23455555521 224567888899998887543221          2346799999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          192 KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      +|+|||||||||+||.++...+.+.|++.  +.|+|+|+|+++.+.. ||+|++|++|+++ ..|+++++.+
T Consensus      1439 ~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~-~DrIlVld~G~Iv-E~G~~~eLl~ 1508 (1522)
T TIGR00957      1439 KTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMD-YTRVIVLDKGEVA-EFGAPSNLLQ 1508 (1522)
T ss_pred             CCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh-CCEEEEEECCEEE-EECCHHHHHh
Confidence            99999999999999999999999998764  5799999999999985 8999999999997 4689888754

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=100.00  E-value=2.4e-41  Score=300.96  Aligned_cols=207  Identities=22%  Similarity=0.293  Sum_probs=175.5

Q ss_pred             CCCCcEEEEeeEEEcCCC----------CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe--
Q 024529           51 PGPPIISFSDASFGYPGG----------PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--  118 (266)
Q Consensus        51 ~~~~~l~~~~l~~~y~~~----------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~--  118 (266)
                      ..++.++.+++.+.|+-.          ..+++++||++.+|+.+||+|.||||||||-++|.++++++ |+|.+.|.  
T Consensus       272 ~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i  350 (534)
T COG4172         272 DAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDI  350 (534)
T ss_pred             CCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccc
Confidence            356789999999999621          24789999999999999999999999999999999999876 99998774  


Q ss_pred             ------------eeEEEEeccccCCCCCCCcHHHHHHHh---C-CC----CcHHHHHHHHHhcCCCcccccCCCCCCChH
Q 024529          119 ------------VRIAVFSQHHVDGLDLSSNPLLYMMRC---F-PG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGG  178 (266)
Q Consensus       119 ------------~~i~~~~q~~~~~~~~~~~~~~~~~~~---~-~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG  178 (266)
                                  .++-.+||+|+..++...++-.-+...   . +.    ...+++.++|+.+|++....+++++++|||
T Consensus       351 ~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGG  430 (534)
T COG4172         351 DGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGG  430 (534)
T ss_pred             cccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcc
Confidence                        358899999988777776654433221   1 11    235678899999999988889999999999


Q ss_pred             HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCC
Q 024529          179 QKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHG  254 (266)
Q Consensus       179 qkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g  254 (266)
                      ||||++||||++.+|++++||||||+||..-..++++.|++    ++-+-++||||+..+..+||+|+||++|+|+ ..|
T Consensus       431 QRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiV-E~G  509 (534)
T COG4172         431 QRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIV-EQG  509 (534)
T ss_pred             hhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEe-eeC
Confidence            99999999999999999999999999999988888887764    3568999999999999999999999999997 467


Q ss_pred             ChhHH
Q 024529          255 TFHDY  259 (266)
Q Consensus       255 ~~~~~  259 (266)
                      +.+++
T Consensus       510 ~~~~i  514 (534)
T COG4172         510 PTEAV  514 (534)
T ss_pred             CHHHH
Confidence            66554

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=100.00  E-value=3.8e-41  Score=286.50  Aligned_cols=186  Identities=15%  Similarity=0.184  Sum_probs=142.9

Q ss_pred             ceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEE-EcCeeeEEEEeccccCCCCCCCcHHHHHHH--hCC
Q 024529           71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF-RSAKVRIAVFSQHHVDGLDLSSNPLLYMMR--CFP  147 (266)
Q Consensus        71 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~-~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~  147 (266)
                      +|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|. +++.. + .+.+.+  .+....+..+++..  ...
T Consensus         2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~-~-~~~~~~--~l~~~ltv~enl~~~~~~~   77 (213)
T PRK15177          2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDA-L-PLGANS--FILPGLTGEENARMMASLY   77 (213)
T ss_pred             eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCce-e-cccccc--ccCCcCcHHHHHHHHHHHc
Confidence            68999999999999999999999999999999999999999996 55432 1 111221  11122233333321  111


Q ss_pred             CCcHHHH-HHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh-c-CCEE
Q 024529          148 GVPEQKL-RAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL-F-QGGI  224 (266)
Q Consensus       148 ~~~~~~~-~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~-~-~~ti  224 (266)
                      .....++ ..+.+.+++.. ..++++..||||||||++|||||+.+|+++||||||+++|+.+...+.+.+.+ . +.++
T Consensus        78 ~~~~~~~~~~~~~~~~l~~-~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~i  156 (213)
T PRK15177         78 GLDGDEFSHFCYQLTQLEQ-CYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQKGL  156 (213)
T ss_pred             CCCHHHHHHHHHHHhChhH-HhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcE
Confidence            2223332 33345567764 45788999999999999999999999999999999999999999888887643 2 4589


Q ss_pred             EEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHHH
Q 024529          225 LMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM  262 (266)
Q Consensus       225 iivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~  262 (266)
                      |++||+++++..+||++++|++|+++ +.++.++.++.
T Consensus       157 i~vsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~~~  193 (213)
T PRK15177        157 IVLTHNPRLIKEHCHAFGVLLHGKIT-MCEDLAQATAL  193 (213)
T ss_pred             EEEECCHHHHHHhcCeeEEEECCeEE-EeCCHHHHHHH
Confidence            99999999999999999999999997 77888776544

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=100.00  E-value=8.3e-41  Score=304.63  Aligned_cols=206  Identities=24%  Similarity=0.408  Sum_probs=173.2

Q ss_pred             CcEEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeE
Q 024529           54 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI  121 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i  121 (266)
                      ..|.++++++.-|+. +++++++||++.+||.+||+||||||||||.|+|.|..+|.+|.|+.++-           ..|
T Consensus       333 g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hi  412 (580)
T COG4618         333 GALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHI  412 (580)
T ss_pred             ceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhcccc
Confidence            469999999987664 57999999999999999999999999999999999999999999998873           369


Q ss_pred             EEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCC----------CCCCChHHHHHHHHHHHHcc
Q 024529          122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQP----------MYTLSGGQKSRVAFAKITFK  191 (266)
Q Consensus       122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----------~~~LSgGqkqRv~lAral~~  191 (266)
                      ||+||+..   -+..+..+++.+..++.+.+.+.++....+.++-....|          ...||||||||++|||||..
T Consensus       413 GYLPQdVe---LF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG  489 (580)
T COG4618         413 GYLPQDVE---LFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYG  489 (580)
T ss_pred             CcCcccce---ecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcC
Confidence            99999853   234567777776655667777777777666654332222          45799999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHh---hcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHHHHh
Q 024529          192 KPHIILLDEPSNHLDLDAVEALIQGLV---LFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQ  264 (266)
Q Consensus       192 ~p~lllLDEPt~~LD~~~~~~l~~~l~---~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~  264 (266)
                      +|.+++||||-++||.+....+.+.+.   ..++|+|+|||.+..+. .+|+|++|++|++. ..|+.++..+...
T Consensus       490 ~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~-~~Dkilvl~~G~~~-~FG~r~eVLa~~~  563 (580)
T COG4618         490 DPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALA-SVDKILVLQDGRIA-AFGPREEVLAKVL  563 (580)
T ss_pred             CCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHh-hcceeeeecCChHH-hcCCHHHHHHHhc
Confidence            999999999999999999999888765   45789999999999887 69999999999996 5699988876553

>PTZ00243 ABC transporter; Provisional

Probab=100.00  E-value=4.5e-40  Score=344.25  Aligned_cols=201  Identities=19%  Similarity=0.312  Sum_probs=171.2

Q ss_pred             cEEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEE
Q 024529           55 IISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA  122 (266)
Q Consensus        55 ~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~  122 (266)
                      .|+++||+|+|+++ +.+|+||||+|++||++||+|++|||||||+++|.|+++|++|+|.++|.           ..++
T Consensus      1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~ 1387 (1560)
T PTZ00243       1308 SLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFS 1387 (1560)
T ss_pred             eEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcce
Confidence            59999999999654 45999999999999999999999999999999999999999999999874           3699


Q ss_pred             EEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc----------CCCCCCChHHHHHHHHHHHHccC
Q 024529          123 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKITFKK  192 (266)
Q Consensus       123 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqRv~lAral~~~  192 (266)
                      ++||++..   +..+..+++.. ....+++++.++++.+++.+....          .....||||||||++|||||+++
T Consensus      1388 iVpQdp~L---F~gTIreNIdp-~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~ 1463 (1560)
T PTZ00243       1388 MIPQDPVL---FDGTVRQNVDP-FLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKK 1463 (1560)
T ss_pred             EECCCCcc---ccccHHHHhCc-ccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcC
Confidence            99999752   34466666532 234567889999999988653322          12467999999999999999995


Q ss_pred             -CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          193 -PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       193 -p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                       |+|||||||||+||+++...+.+.|.+.  +.|||+|+|+++.+.. ||+|++|++|+++ ..|+++++.+
T Consensus      1464 ~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~Vv-E~Gt~~eLl~ 1533 (1560)
T PTZ00243       1464 GSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQ-YDKIIVMDHGAVA-EMGSPRELVM 1533 (1560)
T ss_pred             CCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHh-CCEEEEEECCEEE-EECCHHHHHh
Confidence             8999999999999999999999988764  5799999999999974 9999999999997 4688888754

>PLN03211 ABC transporter G-25; Provisional

Probab=100.00  E-value=1.3e-40  Score=323.87  Aligned_cols=205  Identities=23%  Similarity=0.327  Sum_probs=164.3

Q ss_pred             EEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCC--ceEEEEcCe-------eeEEEEecc
Q 024529           57 SFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS--SGTVFRSAK-------VRIAVFSQH  127 (266)
Q Consensus        57 ~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~~~-------~~i~~~~q~  127 (266)
                      .++|+++.|+ ++.+|+|+|+++++||++||+|||||||||||++|+|..+|+  +|+|.+++.       ..++|++|+
T Consensus        70 ~~~~l~~~~~-~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~  148 (659)
T PLN03211         70 KISDETRQIQ-ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQD  148 (659)
T ss_pred             ccccccccCC-CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcc
Confidence            3566777784 457999999999999999999999999999999999999885  899998875       258999998


Q ss_pred             ccCCCCCCCcHHHHHH--HhC--C-CCc----HHHHHHHHHhcCCCccc----ccCCCCCCChHHHHHHHHHHHHccCCC
Q 024529          128 HVDGLDLSSNPLLYMM--RCF--P-GVP----EQKLRAHLGSFGVTGNL----ALQPMYTLSGGQKSRVAFAKITFKKPH  194 (266)
Q Consensus       128 ~~~~~~~~~~~~~~~~--~~~--~-~~~----~~~~~~~l~~~~l~~~~----~~~~~~~LSgGqkqRv~lAral~~~p~  194 (266)
                      ....  ...++.+.+.  ...  + ...    .+++.++++.+|+.+..    .++.++.||||||||++||++|+.+|+
T Consensus       149 ~~l~--~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~  226 (659)
T PLN03211        149 DILY--PHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS  226 (659)
T ss_pred             cccC--CcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCC
Confidence            6422  2223333332  111  1 111    23467889999996432    234578899999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHH-HHHhhcCEEEEEeCCeEEecCCChhHHHHHHhc
Q 024529          195 IILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEH-LISGSVEELWVVSEGKATPFHGTFHDYKKMLQS  265 (266)
Q Consensus       195 lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~-~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~~  265 (266)
                      ||+|||||+|||+.++..+.+.|++   .+.|||++||+++ .+..+||++++|++|+++ +.|+.++..+.+.+
T Consensus       227 iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv-~~G~~~~~~~~f~~  300 (659)
T PLN03211        227 LLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCL-FFGKGSDAMAYFES  300 (659)
T ss_pred             EEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEE-EECCHHHHHHHHHH
Confidence            9999999999999999998888765   3679999999998 578899999999999996 78999888776653

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=6.7e-41  Score=265.57  Aligned_cols=200  Identities=19%  Similarity=0.277  Sum_probs=164.2

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe----------------
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------------  118 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------------  118 (266)
                      .|.++++++.| |...+|-||+|+.+.||.+.++||+|+|||||+|.|.-+.-|.+|+..+.+.                
T Consensus         2 sirv~~in~~y-g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~l   80 (242)
T COG4161           2 SIQLNGINCFY-GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDL   80 (242)
T ss_pred             ceEEccccccc-ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHH
Confidence            37899999999 4567899999999999999999999999999999999999999999976542                


Q ss_pred             -eeEEEEeccccCCCCCCCcHHHHHHHh----C---CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHc
Q 024529          119 -VRIAVFSQHHVDGLDLSSNPLLYMMRC----F---PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF  190 (266)
Q Consensus       119 -~~i~~~~q~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~  190 (266)
                       ..+|+++|...  +....++..++...    .   ......++.++|+++.+.+ ..++.+-.|||||+|||+|||||+
T Consensus        81 r~~vgmvfqqy~--lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~-~adr~plhlsggqqqrvaiaralm  157 (242)
T COG4161          81 RRNVGMVFQQYN--LWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKP-YADRYPLHLSGGQQQRVAIARALM  157 (242)
T ss_pred             HHhhhhhhhhhc--cCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhcccc-ccccCceecccchhhhHHHHHHHh
Confidence             35899998753  22233444444321    1   1123456788999999975 577888999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529          191 KKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  259 (266)
Q Consensus       191 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  259 (266)
                      .+|++||+||||++|||+-..++.+.+++   .+.|-++|||..+.+.+++.+++.|++|+|+ ..|+.+.|
T Consensus       158 mkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~iv-e~g~a~~f  228 (242)
T COG4161         158 MEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIV-EQGDASCF  228 (242)
T ss_pred             cCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeE-eecchhhc
Confidence            99999999999999999977776666655   4668899999999999999999999999997 46776554

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=100.00  E-value=1.4e-40  Score=290.05  Aligned_cols=185  Identities=23%  Similarity=0.267  Sum_probs=144.9

Q ss_pred             EeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEE-----------EcCe---------
Q 024529           59 SDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF-----------RSAK---------  118 (266)
Q Consensus        59 ~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~-----------~~~~---------  118 (266)
                      .+++++|++...+++|+|+ +.+|++++|+|||||||||||++|+|+++|++|+|.           +++.         
T Consensus         4 ~~~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~   82 (255)
T cd03236           4 DEPVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL   82 (255)
T ss_pred             cCcceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHh
Confidence            4789999644468999995 999999999999999999999999999999999995           3332         


Q ss_pred             ----eeEEEEeccccCCCCCCCcHHHHHHHhCC-CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCC
Q 024529          119 ----VRIAVFSQHHVDGLDLSSNPLLYMMRCFP-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP  193 (266)
Q Consensus       119 ----~~i~~~~q~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p  193 (266)
                          ..++|++|..... .  ......+..... ......+.++++.+++.+ ..++++.+||||||||++|||||+.+|
T Consensus        83 ~~~~~~i~~~~~~~~~~-~--~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrv~laral~~~p  158 (255)
T cd03236          83 LEGDVKVIVKPQYVDLI-P--KAVKGKVGELLKKKDERGKLDELVDQLELRH-VLDRNIDQLSGGELQRVAIAAALARDA  158 (255)
T ss_pred             hhcccceeeecchhccC-c--hHHHHHHHHHhchhHHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence                1256666653211 1  111111111111 123456788999999975 456788999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHHhhcCEEEEEeCCeE
Q 024529          194 HIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKA  249 (266)
Q Consensus       194 ~lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~~~~~~d~i~~l~~G~i  249 (266)
                      +++||||||++||+.++..+.+.+++   .+.|||++|||++++..+||++++|+ |++
T Consensus       159 ~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~  216 (255)
T cd03236         159 DFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEP  216 (255)
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCC
Confidence            99999999999999998877777654   35799999999999999999999995 444

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=8.5e-41  Score=285.26  Aligned_cols=184  Identities=24%  Similarity=0.318  Sum_probs=152.7

Q ss_pred             eeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------------eeEEEEeccccCCCCCCCc
Q 024529           73 KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------VRIAVFSQHHVDGLDLSSN  137 (266)
Q Consensus        73 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------------~~i~~~~q~~~~~~~~~~~  137 (266)
                      =+++|+.+.-.++||.|+||||||||+|+|+|+.+|++|.|..+++               .++||+||+...+..  .+
T Consensus        15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH--~t   92 (352)
T COG4148          15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPH--YT   92 (352)
T ss_pred             EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccc--eE
Confidence            3789999886899999999999999999999999999999988774               369999998632222  22


Q ss_pred             HHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 024529          138 PLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL  217 (266)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l  217 (266)
                      +.-++.............++.+.+|+. ++.++.+.+|||||||||+|+|||+..|++||||||.+.||...+.+++-++
T Consensus        93 VrgNL~YG~~~~~~~~fd~iv~lLGI~-hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~Eilpyl  171 (352)
T COG4148          93 VRGNLRYGMWKSMRAQFDQLVALLGIE-HLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYL  171 (352)
T ss_pred             EecchhhhhcccchHhHHHHHHHhCcH-HHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHH
Confidence            222222111123456778889999997 5778899999999999999999999999999999999999999999988877


Q ss_pred             hhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          218 VLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       218 ~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      .+.    +..|++|||.++++.++||++++|++|++. ..|+.++..
T Consensus       172 ERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~-A~g~~e~v~  217 (352)
T COG4148         172 ERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVK-ASGPLEEVW  217 (352)
T ss_pred             HHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEE-ecCcHHHHh
Confidence            653    457999999999999999999999999997 568877764

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=6.8e-41  Score=285.07  Aligned_cols=193  Identities=25%  Similarity=0.374  Sum_probs=152.2

Q ss_pred             cceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee----------eEEEEe-ccccCCCCCCCcH
Q 024529           70 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV----------RIAVFS-QHHVDGLDLSSNP  138 (266)
Q Consensus        70 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~----------~i~~~~-q~~~~~~~~~~~~  138 (266)
                      .+++|+||+|++|++++++|||||||||+||+|+|++.|++|.|.+.|..          ++++++ |.....++.....
T Consensus        38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~d  117 (325)
T COG4586          38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALD  117 (325)
T ss_pred             hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhh
Confidence            47899999999999999999999999999999999999999999987641          233332 1111111111110


Q ss_pred             HHHHHHhCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHH
Q 024529          139 LLYMMRCFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALI  214 (266)
Q Consensus       139 ~~~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~  214 (266)
                      -..+......+    ..++...+-+.+++.+. .+.|++.||-|||.|+.||.+|+++|+||+|||||=|||...+..+.
T Consensus       118 s~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~-lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir  196 (325)
T COG4586         118 SLEVLKLIYEIPDDEFAERLDFLTEILDLEGF-LKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIR  196 (325)
T ss_pred             hHHHHHHHHhCCHHHHHHHHHHHHHHhcchhh-hhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHH
Confidence            00111111122    24556666777888754 56899999999999999999999999999999999999999999999


Q ss_pred             HHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHHHHh
Q 024529          215 QGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQ  264 (266)
Q Consensus       215 ~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~  264 (266)
                      +.++++    +.||+++||+++.+..+||||++|+.|+++ |+|+..++.++..
T Consensus       197 ~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv-~dg~l~~l~~~f~  249 (325)
T COG4586         197 EFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLV-FDGTLAQLQEQFG  249 (325)
T ss_pred             HHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEe-ecccHHHHHHHhC
Confidence            988765    579999999999999999999999999997 8999999877653

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=100.00  E-value=2.3e-40  Score=273.00  Aligned_cols=148  Identities=24%  Similarity=0.331  Sum_probs=124.9

Q ss_pred             CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee------eEEEEeccccCCCCCCCcHHHHH
Q 024529           69 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV------RIAVFSQHHVDGLDLSSNPLLYM  142 (266)
Q Consensus        69 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~------~i~~~~q~~~~~~~~~~~~~~~~  142 (266)
                      +.+|+|+||+|++|++++|+||||||||||||+|.    +++|++.+.+..      .++|++|                
T Consensus         8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~~~~~~~~~~~~q----------------   67 (176)
T cd03238           8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLPKFSRNKLIFIDQ----------------   67 (176)
T ss_pred             eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcccccccccEEEEhH----------------
Confidence            46899999999999999999999999999999996    368988765431      1112111                


Q ss_pred             HHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccC--CCEEEEeCCCCCCCHHHHHHHHHHHhh-
Q 024529          143 MRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK--PHIILLDEPSNHLDLDAVEALIQGLVL-  219 (266)
Q Consensus       143 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~--p~lllLDEPt~~LD~~~~~~l~~~l~~-  219 (266)
                                  .++++.+++.....++++.+||||||||++|||||+.+  |++|||||||++||+.+...+.+.+++ 
T Consensus        68 ------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~  135 (176)
T cd03238          68 ------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGL  135 (176)
T ss_pred             ------------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence                        45788899865335678899999999999999999999  999999999999999999988887765 


Q ss_pred             --cCCEEEEEecCHHHHHhhcCEEEEEeCCeE
Q 024529          220 --FQGGILMVSHDEHLISGSVEELWVVSEGKA  249 (266)
Q Consensus       220 --~~~tiiivtHd~~~~~~~~d~i~~l~~G~i  249 (266)
                        .+.|||+|||+++++. .||++++|++|+.
T Consensus       136 ~~~g~tvIivSH~~~~~~-~~d~i~~l~~g~~  166 (176)
T cd03238         136 IDLGNTVILIEHNLDVLS-SADWIIDFGPGSG  166 (176)
T ss_pred             HhCCCEEEEEeCCHHHHH-hCCEEEEECCCCC
Confidence              4679999999999985 7999999988665

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=100.00  E-value=1e-39  Score=339.48  Aligned_cols=189  Identities=25%  Similarity=0.365  Sum_probs=155.4

Q ss_pred             cEEEEeeEEEcCCC--CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEc-Ce-----------ee
Q 024529           55 IISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS-AK-----------VR  120 (266)
Q Consensus        55 ~l~~~~l~~~y~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~-~~-----------~~  120 (266)
                      .|+++||+|+|++.  .++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++ +.           ..
T Consensus       382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~  461 (1466)
T PTZ00265        382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSK  461 (1466)
T ss_pred             cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHh
Confidence            59999999999743  369999999999999999999999999999999999999999999984 32           25


Q ss_pred             EEEEeccccCCCCCCCcHHHHHHHhC------------------------------------------------------
Q 024529          121 IAVFSQHHVDGLDLSSNPLLYMMRCF------------------------------------------------------  146 (266)
Q Consensus       121 i~~~~q~~~~~~~~~~~~~~~~~~~~------------------------------------------------------  146 (266)
                      ++|++|++...   ..+..+++....                                                      
T Consensus       462 Ig~V~Q~~~LF---~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  538 (1466)
T PTZ00265        462 IGVVSQDPLLF---SNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMR  538 (1466)
T ss_pred             ccEecccccch---hccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcc
Confidence            89999986421   224444443210                                                      


Q ss_pred             ---CCCcHHHHHHHHHhcCCCccc----------ccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH
Q 024529          147 ---PGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL  213 (266)
Q Consensus       147 ---~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l  213 (266)
                         ....++++.++++.+++.+..          ....+..||||||||++|||||+.+|+||||||||++||+.+...+
T Consensus       539 ~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i  618 (1466)
T PTZ00265        539 KNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLV  618 (1466)
T ss_pred             cccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHH
Confidence               012346678888888775432          1345689999999999999999999999999999999999999999


Q ss_pred             HHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCC
Q 024529          214 IQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEG  247 (266)
Q Consensus       214 ~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G  247 (266)
                      .+.|.+.    +.|+|+|||+++.+. .||+|++|++|
T Consensus       619 ~~~L~~~~~~~g~TvIiIsHrls~i~-~aD~Iivl~~g  655 (1466)
T PTZ00265        619 QKTINNLKGNENRITIIIAHRLSTIR-YANTIFVLSNR  655 (1466)
T ss_pred             HHHHHHHhhcCCCEEEEEeCCHHHHH-hCCEEEEEeCC
Confidence            8888764    469999999999985 79999999986

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=3.9e-40  Score=326.77  Aligned_cols=202  Identities=26%  Similarity=0.384  Sum_probs=174.0

Q ss_pred             cEEEEeeEEEcCCC--CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeE
Q 024529           55 IISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI  121 (266)
Q Consensus        55 ~l~~~~l~~~y~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i  121 (266)
                      -|+++||+|.||..  .++|+|+||+|++|+.+||+|||||||||.+.+|-.+|+|++|.|.+++.           ..+
T Consensus       987 ~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i 1066 (1228)
T KOG0055|consen  987 DIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQI 1066 (1228)
T ss_pred             EEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhc
Confidence            59999999999853  46899999999999999999999999999999999999999999999874           369


Q ss_pred             EEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc----------CCCCCCChHHHHHHHHHHHHcc
Q 024529          122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKITFK  191 (266)
Q Consensus       122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqRv~lAral~~  191 (266)
                      +.+.|+|..   +..+..+++.......+++++.++++..+.++....          .+..+||||||||+|||||+++
T Consensus      1067 ~lVsQEP~L---F~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilR 1143 (1228)
T KOG0055|consen 1067 GLVSQEPVL---FNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILR 1143 (1228)
T ss_pred             ceeccCchh---hcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHc
Confidence            999999853   344666666554334688889888887766543322          2356899999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          192 KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      ||+||||||.||+||.++.+.+.+.|.+.  +.|.|+|+|++..+.+ ||.|+|+++|+++ ..|+.+++..
T Consensus      1144 nPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqn-aD~I~Vi~~G~Vv-E~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1144 NPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQN-ADVIAVLKNGKVV-EQGTHDELLA 1213 (1228)
T ss_pred             CCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhc-CCEEEEEECCEEE-ecccHHHHHh
Confidence            99999999999999999999999999764  6799999999999985 9999999999997 5899988765

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=100.00  E-value=2.5e-39  Score=315.47  Aligned_cols=201  Identities=22%  Similarity=0.328  Sum_probs=164.3

Q ss_pred             CcEEEEeeEEEcCCC---CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------
Q 024529           54 PIISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------  118 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------  118 (266)
                      ++|+++|+++.|+++   ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+++.            
T Consensus         3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~   82 (648)
T PRK10535          3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ   82 (648)
T ss_pred             cEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHH
Confidence            479999999999532   46899999999999999999999999999999999999999999998763            


Q ss_pred             ---eeEEEEeccccCCCCCCCcHHHHHHH--hCCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHH
Q 024529          119 ---VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT  189 (266)
Q Consensus       119 ---~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral  189 (266)
                         ..++|++|++..  ....+..+++..  ....    ...+++.++++.+++.+ ..++++.+|||||+||++|||||
T Consensus        83 ~~~~~i~~v~q~~~l--~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~-~~~~~~~~LS~Gq~qrv~LAraL  159 (648)
T PRK10535         83 LRREHFGFIFQRYHL--LSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLED-RVEYQPSQLSGGQQQRVSIARAL  159 (648)
T ss_pred             HHhccEEEEeCCccc--CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChh-hhcCCcccCCHHHHHHHHHHHHH
Confidence               248999998632  222233333321  1111    12345778899999974 56788999999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529          190 FKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  259 (266)
Q Consensus       190 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  259 (266)
                      +.+|++|||||||++||+.+++.+.+.+++.   +.|+|++||+.+.+. .||++++|++|+++ ..|+.++.
T Consensus       160 ~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~~  230 (648)
T PRK10535        160 MNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAA-QAERVIEIRDGEIV-RNPPAQEK  230 (648)
T ss_pred             hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHH-hCCEEEEEECCEEE-eecCcccc
Confidence            9999999999999999999999988877653   569999999999886 69999999999996 45665543

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=100.00  E-value=5.7e-39  Score=335.48  Aligned_cols=201  Identities=19%  Similarity=0.305  Sum_probs=169.6

Q ss_pred             CcEEEEeeEEEcCC-CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeE
Q 024529           54 PIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI  121 (266)
Q Consensus        54 ~~l~~~~l~~~y~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i  121 (266)
                      ..|+++||+++|++ .+.+|+|+||+|++||++||+|+||||||||+++|+|+++ .+|+|.++|.           .++
T Consensus      1216 g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~i 1294 (1490)
T TIGR01271      1216 GQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAF 1294 (1490)
T ss_pred             CeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhce
Confidence            46999999999964 3679999999999999999999999999999999999997 7999999874           369


Q ss_pred             EEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccC----------CCCCCChHHHHHHHHHHHHcc
Q 024529          122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQ----------PMYTLSGGQKSRVAFAKITFK  191 (266)
Q Consensus       122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~~LSgGqkqRv~lAral~~  191 (266)
                      +|+||++..   +..+...++.. ....+++++.++++.+++.+.....          ....||||||||++|||||++
T Consensus      1295 s~IpQdp~L---F~GTIR~NLdp-~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr 1370 (1490)
T TIGR01271      1295 GVIPQKVFI---FSGTFRKNLDP-YEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILS 1370 (1490)
T ss_pred             EEEeCCCcc---CccCHHHHhCc-ccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhC
Confidence            999999753   33456665522 2245678899999999886433222          234799999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          192 KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      +|+||||||||++||..+...+.+.|.+.  ++|||+|||+++.+.. ||+|++|++|++++ .|+++++.+
T Consensus      1371 ~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-~DrIlvL~~G~ivE-~g~p~~Ll~ 1440 (1490)
T TIGR01271      1371 KAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLE-CQQFLVIEGSSVKQ-YDSIQKLLN 1440 (1490)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh-CCEEEEEECCEEEE-eCCHHHHHc
Confidence            99999999999999999999999998764  5799999999999885 99999999999974 688887753

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.3e-39  Score=261.09  Aligned_cols=198  Identities=25%  Similarity=0.354  Sum_probs=163.9

Q ss_pred             CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe--------------
Q 024529           53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------  118 (266)
Q Consensus        53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------  118 (266)
                      .|.+++.++|+.|++ ..-.+||||++.|||+.+|+|+|||||||||+||++-+.|++|+|.+..+              
T Consensus         4 ~PLL~V~~lsk~Yg~-~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEae   82 (258)
T COG4107           4 KPLLSVSGLSKLYGP-GKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE   82 (258)
T ss_pred             CcceeehhhhhhhCC-CcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHH
Confidence            468999999999954 45789999999999999999999999999999999999999999976432              


Q ss_pred             ------eeEEEEeccccCCCCCCC----cHHHHHHH---hCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHH
Q 024529          119 ------VRIAVFSQHHVDGLDLSS----NPLLYMMR---CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAF  185 (266)
Q Consensus       119 ------~~i~~~~q~~~~~~~~~~----~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~l  185 (266)
                            ...|++.|+|.+++.+..    |.-+.++.   ...+.-...+.++|+.+.++....+-.+.++||||+||+.|
T Consensus        83 RR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQi  162 (258)
T COG4107          83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQI  162 (258)
T ss_pred             HHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHH
Confidence                  248999999876654332    22122211   11133456678899999987665566679999999999999


Q ss_pred             HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHh----hcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEe
Q 024529          186 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLV----LFQGGILMVSHDEHLISGSVEELWVVSEGKATP  251 (266)
Q Consensus       186 Aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~----~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~  251 (266)
                      ||-|+..|+++++||||.|||..-...+++.++    +.+.++++||||+..+.-.++|.++|++|++++
T Consensus       163 ARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve  232 (258)
T COG4107         163 ARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVE  232 (258)
T ss_pred             HHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEec
Confidence            999999999999999999999998888888765    456799999999999999999999999999864

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=100.00  E-value=1.9e-39  Score=263.14  Aligned_cols=153  Identities=35%  Similarity=0.571  Sum_probs=126.0

Q ss_pred             EEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCc
Q 024529           58 FSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSN  137 (266)
Q Consensus        58 ~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~  137 (266)
                      ++++++.|++ ..+|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|++++...              ...
T Consensus         2 ~~~~~~~~~~-~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~--------------~~~   66 (157)
T cd00267           2 IENLSFRYGG-RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDI--------------AKL   66 (157)
T ss_pred             eEEEEEEeCC-eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEc--------------ccC
Confidence            6899999954 4699999999999999999999999999999999999999999998765310              000


Q ss_pred             HHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 024529          138 PLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL  217 (266)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l  217 (266)
                      .            ..+   ....+++.        .+|||||+||++|||+++.+|++++|||||++||+.++..+.+.+
T Consensus        67 ~------------~~~---~~~~i~~~--------~qlS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l  123 (157)
T cd00267          67 P------------LEE---LRRRIGYV--------PQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELL  123 (157)
T ss_pred             C------------HHH---HHhceEEE--------eeCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHH
Confidence            0            000   00011110        019999999999999999999999999999999999999998888


Q ss_pred             hhc---CCEEEEEecCHHHHHhhcCEEEEEeCCe
Q 024529          218 VLF---QGGILMVSHDEHLISGSVEELWVVSEGK  248 (266)
Q Consensus       218 ~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~  248 (266)
                      .+.   +.|+|++||+++++..+||++++|++|+
T Consensus       124 ~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~  157 (157)
T cd00267         124 RELAEEGRTVIIVTHDPELAELAADRVIVLKDGK  157 (157)
T ss_pred             HHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence            654   3599999999999999999999999875

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=100.00  E-value=2.1e-39  Score=292.04  Aligned_cols=171  Identities=27%  Similarity=0.353  Sum_probs=140.4

Q ss_pred             EECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------eeEEEEeccccCCCCCCCcHHHHHHHh--CCCCc----H
Q 024529           87 MVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGVP----E  151 (266)
Q Consensus        87 l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~~----~  151 (266)
                      |+||||||||||+++|+|+++|++|+|.+++.         ..++|++|++..  ....+..+++...  .....    .
T Consensus         1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l--~~~~tv~enl~~~~~~~~~~~~~~~   78 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYAL--FPHMTVEENVAFGLKMRKVPRAEIK   78 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccc--cCCCcHHHHHHHHHhhcCCCHHHHH
Confidence            68999999999999999999999999998774         258999998632  2233444443211  11111    3


Q ss_pred             HHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEE
Q 024529          152 QKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMV  227 (266)
Q Consensus       152 ~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiiv  227 (266)
                      +++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|.+.    +.|||+|
T Consensus        79 ~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiiv  157 (325)
T TIGR01187        79 PRVLEALRLVQLEE-FADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFV  157 (325)
T ss_pred             HHHHHHHHHcCCcc-hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            45778999999974 567889999999999999999999999999999999999999999988877643    5799999


Q ss_pred             ecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          228 SHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       228 tHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      |||++++..+||++++|++|++. ..|+++++.+
T Consensus       158 THd~~e~~~~~d~i~vl~~G~i~-~~g~~~~~~~  190 (325)
T TIGR01187       158 THDQEEAMTMSDRIAIMRKGKIA-QIGTPEEIYE  190 (325)
T ss_pred             eCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence            99999999999999999999996 5788877643

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=8.5e-40  Score=293.48  Aligned_cols=219  Identities=44%  Similarity=0.854  Sum_probs=197.4

Q ss_pred             ccCCCCCCCCCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEE
Q 024529           43 EFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIA  122 (266)
Q Consensus        43 ~~~~~~~~~~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~  122 (266)
                      .||.+.. -.+|+|-+.+|+|.|++.+++|.+++|-|.--..++|+||||.||||||++|.|-+.|..|+.+-+.+.+||
T Consensus       575 ~FPep~~-L~PPvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG  653 (807)
T KOG0066|consen  575 QFPEPTK-LNPPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIG  653 (807)
T ss_pred             ecCCCCC-CCCCeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeee
Confidence            3444332 357899999999999988899999999999999999999999999999999999999999999988899999


Q ss_pred             EEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCC
Q 024529          123 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS  202 (266)
Q Consensus       123 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt  202 (266)
                      ++.|+....+....++..++.+.+ ..+.+.++..|..||+..+...-.+..|||||+-||++|-.-+..|+||||||||
T Consensus       654 ~FdQh~~E~L~~Eetp~EyLqr~F-Nlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPT  732 (807)
T KOG0066|consen  654 WFDQHANEALNGEETPVEYLQRKF-NLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPT  732 (807)
T ss_pred             chhhhhHHhhccccCHHHHHHHhc-CCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCC
Confidence            999987667777788888887766 6788999999999999876666678999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHHHH
Q 024529          203 NHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKML  263 (266)
Q Consensus       203 ~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~  263 (266)
                      |+||.+++.++.+.+.++.+.|||||||..++.......||+++..|-...|.+++|.+..
T Consensus       733 NNLDIESIDALaEAIney~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFeDYkkEV  793 (807)
T KOG0066|consen  733 NNLDIESIDALAEAINEYNGGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFEDYKKEV  793 (807)
T ss_pred             CCcchhhHHHHHHHHHhccCcEEEEecccceeeecCceEEEEccCChhhccccHHHHHHHH
Confidence            9999999999999999999999999999999988777899999888877889999997653

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=1.2e-39  Score=265.38  Aligned_cols=202  Identities=22%  Similarity=0.342  Sum_probs=168.6

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-------------ee
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------VR  120 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------~~  120 (266)
                      ++|+++|++++| ++..+++++||++.+||.-+|+||||+||||+|.+|+|..+|+.|++++.+.             ..
T Consensus         4 ~iL~~~~vsVsF-~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~G   82 (249)
T COG4674           4 IILYLDGVSVSF-GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAG   82 (249)
T ss_pred             ceEEEeceEEEE-cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhc
Confidence            579999999999 5667999999999999999999999999999999999999999999998873             24


Q ss_pred             EEEEeccccCCCCCCCcHHHHHH--------------HhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHH
Q 024529          121 IAVFSQHHVDGLDLSSNPLLYMM--------------RCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFA  186 (266)
Q Consensus       121 i~~~~q~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lA  186 (266)
                      ||--||.|.-+.  ..++++++.              .........++.++|+..|+.+ ..+.....||.||||++.|+
T Consensus        83 IGRKFQ~PtVfe--~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~-~~~~~A~~LSHGqKQwLEIG  159 (249)
T COG4674          83 IGRKFQKPTVFE--NLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGD-ERDRLAALLSHGQKQWLEIG  159 (249)
T ss_pred             cCccccCCeehh--hccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccch-hhhhhhhhhccchhhhhhhh
Confidence            777788763222  222333321              1111223568999999999975 56788899999999999999


Q ss_pred             HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          187 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       187 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      ..++++|++||||||++|+-.......-+.|+..  +.+|++|.||+.|+..++++|-+|+.|.+. .+|+.+++.
T Consensus       160 Mll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL-~EGsld~v~  234 (249)
T COG4674         160 MLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVL-AEGSLDEVQ  234 (249)
T ss_pred             eeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEecccee-ecccHHHhh
Confidence            9999999999999999999887777777766654  458999999999999999999999999996 789988874

>PLN03232 ABC transporter C family member; Provisional

Probab=100.00  E-value=1.9e-38  Score=331.82  Aligned_cols=201  Identities=21%  Similarity=0.358  Sum_probs=165.1

Q ss_pred             CcEEEEeeEEEcCC--CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCC
Q 024529           54 PIISFSDASFGYPG--GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDG  131 (266)
Q Consensus        54 ~~l~~~~l~~~y~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~  131 (266)
                      ..++++|++|+|++  .+++|+|+||+|++|+.++|+||+|||||||+++|+|+++|++|.+.. -+..++|++|++.. 
T Consensus       613 ~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~-~~~~Iayv~Q~p~L-  690 (1495)
T PLN03232        613 PAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVV-IRGSVAYVPQVSWI-  690 (1495)
T ss_pred             CcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEE-ecCcEEEEcCcccc-
Confidence            35999999999964  256899999999999999999999999999999999999999987642 23469999999752 


Q ss_pred             CCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc----------CCCCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 024529          132 LDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKITFKKPHIILLDEP  201 (266)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqRv~lAral~~~p~lllLDEP  201 (266)
                        +..+..+++.... ..+++++.++++.+++.++...          .....||||||||++||||++++|+|||||||
T Consensus       691 --f~gTIreNI~fg~-~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEp  767 (1495)
T PLN03232        691 --FNATVRENILFGS-DFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDP  767 (1495)
T ss_pred             --ccccHHHHhhcCC-ccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence              3456666665332 3567788888888887543322          23457999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHH-Hhh--cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          202 SNHLDLDAVEALIQG-LVL--FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       202 t~~LD~~~~~~l~~~-l~~--~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      ||+||+.+.+.+++. +..  .+.|+|+|||+++.+. .||+|++|++|+++ ..|+++++.+
T Consensus       768 tSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~-~aD~Ii~L~~G~i~-~~Gt~~eL~~  828 (1495)
T PLN03232        768 LSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLP-LMDRIILVSEGMIK-EEGTFAELSK  828 (1495)
T ss_pred             ccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHH-hCCEEEEEeCCEEE-EecCHHHHHh
Confidence            999999998888665 443  3579999999999876 59999999999997 6799888753

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=100.00  E-value=4.1e-38  Score=329.81  Aligned_cols=198  Identities=22%  Similarity=0.335  Sum_probs=162.1

Q ss_pred             cEEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCC
Q 024529           55 IISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD  133 (266)
Q Consensus        55 ~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~  133 (266)
                      .++++|+++.|++. +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++  .++|++|++..   
T Consensus       636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--~i~yv~Q~~~l---  710 (1522)
T TIGR00957       636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG--SVAYVPQQAWI---  710 (1522)
T ss_pred             cEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC--EEEEEcCCccc---
Confidence            69999999999643 5689999999999999999999999999999999999999999999886  59999998742   


Q ss_pred             CCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcc----------cccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 024529          134 LSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGN----------LALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN  203 (266)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~  203 (266)
                      ...+..+++.... ..++++..++++.+++.++          ....++.+||||||||++||||++.+|+++||||||+
T Consensus       711 ~~~Ti~eNI~~g~-~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~s  789 (1522)
T TIGR00957       711 QNDSLRENILFGK-ALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLS  789 (1522)
T ss_pred             cCCcHHHHhhcCC-ccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence            2345666654321 2334444555544443211          1234578999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHhh-----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          204 HLDLDAVEALIQGLVL-----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       204 ~LD~~~~~~l~~~l~~-----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      +||+.+.+.+++.+..     .+.|+|+|||+++.+.. ||+|++|++|++. ..|+++++.
T Consensus       790 aLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~-~D~ii~l~~G~i~-~~g~~~~l~  849 (1522)
T TIGR00957       790 AVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQ-VDVIIVMSGGKIS-EMGSYQELL  849 (1522)
T ss_pred             ccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhh-CCEEEEecCCeEE-eeCCHHHHH
Confidence            9999999999888742     24699999999999875 9999999999996 678887764

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PLN03130 ABC transporter C family member; Provisional

Probab=100.00  E-value=3.9e-38  Score=330.27  Aligned_cols=200  Identities=22%  Similarity=0.372  Sum_probs=166.2

Q ss_pred             CcEEEEeeEEEcCC--CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCc-eEEEEcCeeeEEEEeccccC
Q 024529           54 PIISFSDASFGYPG--GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSS-GTVFRSAKVRIAVFSQHHVD  130 (266)
Q Consensus        54 ~~l~~~~l~~~y~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~-G~i~~~~~~~i~~~~q~~~~  130 (266)
                      ..++++|++|+|++  .+++|+|+||+|++|++++|+||+|||||||+++|+|.++|++ |+|.+.  ..++|++|++..
T Consensus       613 ~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~--~~Iayv~Q~p~L  690 (1622)
T PLN03130        613 PAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIR--GTVAYVPQVSWI  690 (1622)
T ss_pred             CceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEc--CeEEEEcCcccc
Confidence            35999999999964  2568999999999999999999999999999999999999999 999864  469999999752


Q ss_pred             CCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc----------CCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 024529          131 GLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKITFKKPHIILLDE  200 (266)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqRv~lAral~~~p~lllLDE  200 (266)
                         +..+..+++.... ..+++++.++++.+++.++...          ....+||||||||++||||++++|+||||||
T Consensus       691 ---fngTIreNI~fg~-~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDE  766 (1622)
T PLN03130        691 ---FNATVRDNILFGS-PFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDD  766 (1622)
T ss_pred             ---CCCCHHHHHhCCC-cccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECC
Confidence               3456666665332 3467788888888887544322          2345799999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHH-Hhh--cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          201 PSNHLDLDAVEALIQG-LVL--FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       201 Pt~~LD~~~~~~l~~~-l~~--~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      |||+||+.+.+.+++. +..  .+.|+|+|||+++.+. .||+|++|++|++. ..|+++++.+
T Consensus       767 ptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~-~aD~Ii~L~~G~i~-e~Gt~~eL~~  828 (1622)
T PLN03130        767 PLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLS-QVDRIILVHEGMIK-EEGTYEELSN  828 (1622)
T ss_pred             CccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHH-hCCEEEEEeCCEEE-EeCCHHHHHh
Confidence            9999999988877653 443  3579999999999876 59999999999996 6799888753

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3e-39  Score=292.90  Aligned_cols=242  Identities=25%  Similarity=0.387  Sum_probs=183.6

Q ss_pred             hhhHHHHHHHHHHHHhccCcccccCCCCcccccCCCCC-CCCCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECC
Q 024529           12 AKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDD-RPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGP   90 (266)
Q Consensus        12 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~   90 (266)
                      ++-++..|...--+++|-++.+..++   -.+.|..++ .....-++++||+|.|..++++|+||||++.+|+.+||+||
T Consensus       496 GT~YR~iQ~nfiDmEnmfdllkee~e---Vvd~P~a~pl~~~~G~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~  572 (790)
T KOG0056|consen  496 GTYYRSIQKNFIDMENMFDLLKEEPE---VVDLPGAPPLKVTQGKIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGP  572 (790)
T ss_pred             HHHHHHHHHhhhhHHHHHHHhhcCch---hhcCCCCCCccccCCeEEEEEeEEecCCCCceeecceEEecCCcEEEEECC
Confidence            34455566655556665444332221   111121111 11234599999999998888999999999999999999999


Q ss_pred             CCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHH
Q 024529           91 NGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLG  159 (266)
Q Consensus        91 nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  159 (266)
                      ||+||||+||+|..+++..+|.|.++++           ..||.+||+...   +..+.+.++....+....+++.++.+
T Consensus       573 SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvL---FNdTI~yNIryak~~AsneevyaAAk  649 (790)
T KOG0056|consen  573 SGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVL---FNDTILYNIRYAKPSASNEEVYAAAK  649 (790)
T ss_pred             CCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCccee---ecceeeeheeecCCCCChHHHHHHHH
Confidence            9999999999999999999999999985           369999998642   23344444433334556667777766


Q ss_pred             hcCCCccccc----------CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEE
Q 024529          160 SFGVTGNLAL----------QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMV  227 (266)
Q Consensus       160 ~~~l~~~~~~----------~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiiv  227 (266)
                      ..++++....          .+.-.|||||||||+|||+++..|.+++|||.||+||..+.+++...|.+.  +.|-|+|
T Consensus       650 AA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVv  729 (790)
T KOG0056|consen  650 AAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVV  729 (790)
T ss_pred             HhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEE
Confidence            6665543221          123479999999999999999999999999999999999999999988875  5689999


Q ss_pred             ecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          228 SHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       228 tHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      .|++..+-+ ||.|+++++|+|+ ..|+.+++..
T Consensus       730 AHRLSTivn-AD~ILvi~~G~Iv-ErG~HeeLl~  761 (790)
T KOG0056|consen  730 AHRLSTIVN-ADLILVISNGRIV-ERGRHEELLK  761 (790)
T ss_pred             eeeehheec-ccEEEEEeCCeEe-ecCcHHHHHh
Confidence            999999985 9999999999997 5788777644

>PRK13409 putative ATPase RIL; Provisional

Probab=100.00  E-value=5.8e-39  Score=308.88  Aligned_cols=184  Identities=20%  Similarity=0.263  Sum_probs=148.5

Q ss_pred             EeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEE-----------EcCe---------
Q 024529           59 SDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF-----------RSAK---------  118 (266)
Q Consensus        59 ~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~-----------~~~~---------  118 (266)
                      ++++++|++...+|++++ .+++|+++||+||||||||||+|+|+|+++|++|+|.           +.|.         
T Consensus        77 ~~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~  155 (590)
T PRK13409         77 EEPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKL  155 (590)
T ss_pred             cCceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHH
Confidence            348999964446899999 9999999999999999999999999999999999996           4432         


Q ss_pred             ----eeEEEEeccccCCCC-CCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCC
Q 024529          119 ----VRIAVFSQHHVDGLD-LSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP  193 (266)
Q Consensus       119 ----~~i~~~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p  193 (266)
                          ..+++.+|....... +..+..+++..   ....+++.++++.+++.. ..++++.+|||||+|||+||+||+.+|
T Consensus       156 ~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~---~~~~~~~~~~l~~l~l~~-~~~~~~~~LSgGe~qrv~ia~al~~~p  231 (590)
T PRK13409        156 YNGEIKVVHKPQYVDLIPKVFKGKVRELLKK---VDERGKLDEVVERLGLEN-ILDRDISELSGGELQRVAIAAALLRDA  231 (590)
T ss_pred             hccCcceeecccchhhhhhhhcchHHHHHHh---hhHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence                235555664321111 11233333321   112456788999999964 567899999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCC
Q 024529          194 HIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEG  247 (266)
Q Consensus       194 ~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G  247 (266)
                      ++|||||||++||+.++.++.+.++++  +.|||+||||++++..+||++++|.++
T Consensus       232 ~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~  287 (590)
T PRK13409        232 DFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE  287 (590)
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence            999999999999999999988887765  789999999999999999999999763

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.2e-38  Score=261.09  Aligned_cols=207  Identities=21%  Similarity=0.358  Sum_probs=167.1

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCC--CCCCceEEEEcCe------------e
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE--LQPSSGTVFRSAK------------V  119 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~~~------------~  119 (266)
                      .+|+++||+.+..+.+.+|++|||+|++||+.+|+||||||||||.++|+|.  |.+++|+|.+++.            .
T Consensus         2 ~~L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~   81 (251)
T COG0396           2 MMLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARA   81 (251)
T ss_pred             ceeEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhc
Confidence            4799999999995434899999999999999999999999999999999997  5789999999875            2


Q ss_pred             eEEEEeccccCCCCCCCcHHHHHHHhCC----C-----CcHHHHHHHHHhcCCCcccccCCCC-CCChHHHHHHHHHHHH
Q 024529          120 RIAVFSQHHVDGLDLSSNPLLYMMRCFP----G-----VPEQKLRAHLGSFGVTGNLALQPMY-TLSGGQKSRVAFAKIT  189 (266)
Q Consensus       120 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~----~-----~~~~~~~~~l~~~~l~~~~~~~~~~-~LSgGqkqRv~lAral  189 (266)
                      .+...+|.|....-+  +...++.....    .     ....++.+.++.+++++...++.+. .+|||||+|..|+.++
T Consensus        82 GifLafQ~P~ei~GV--~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~  159 (251)
T COG0396          82 GIFLAFQYPVEIPGV--TNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLL  159 (251)
T ss_pred             CCEEeecCCccCCCe--eHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHH
Confidence            467778887533222  33333332111    1     2356778899999999877777764 6999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHh---hcCCEEEEEecCHHHHHhh-cCEEEEEeCCeEEecCCChhHHHHHHh
Q 024529          190 FKKPHIILLDEPSNHLDLDAVEALIQGLV---LFQGGILMVSHDEHLISGS-VEELWVVSEGKATPFHGTFHDYKKMLQ  264 (266)
Q Consensus       190 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~---~~~~tiiivtHd~~~~~~~-~d~i~~l~~G~i~~~~g~~~~~~~~~~  264 (266)
                      +.+|++.|||||-||||..+.+.+.+.+.   +.+.++++|||..+.+..+ .|++.+|-+|+|+ ..|++ ++.+.++
T Consensus       160 ~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv-~sG~~-el~~~le  236 (251)
T COG0396         160 LLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIV-KSGDP-ELAEELE  236 (251)
T ss_pred             hcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEE-ecCCH-HHHHHHH
Confidence            99999999999999999999887766554   4567899999999988754 3999999999997 67887 6665544

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=100.00  E-value=1.5e-38  Score=283.05  Aligned_cols=206  Identities=24%  Similarity=0.360  Sum_probs=168.3

Q ss_pred             CCcEEEEeeEEEcC---CCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC-----CceEEEEcCe------
Q 024529           53 PPIISFSDASFGYP---GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK------  118 (266)
Q Consensus        53 ~~~l~~~~l~~~y~---~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~------  118 (266)
                      .++|+++|+++.|.   +...++++|||+|.+||.+||+|+||||||-..+.|+|+++.     -+|+|.++|.      
T Consensus         4 ~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~s   83 (534)
T COG4172           4 MPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS   83 (534)
T ss_pred             CcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCC
Confidence            46899999999994   235689999999999999999999999999999999999864     3689988774      


Q ss_pred             ---------eeEEEEeccccCCCCCCCcHHHH---HHHhCCC----CcHHHHHHHHHhcCCCcc--cccCCCCCCChHHH
Q 024529          119 ---------VRIAVFSQHHVDGLDLSSNPLLY---MMRCFPG----VPEQKLRAHLGSFGVTGN--LALQPMYTLSGGQK  180 (266)
Q Consensus       119 ---------~~i~~~~q~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~~~~l~~~~l~~~--~~~~~~~~LSgGqk  180 (266)
                               .+|+++||+|...++...+.-..   ......+    ....++.++|+.+|+.+.  ..+.++++||||||
T Consensus        84 e~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqR  163 (534)
T COG4172          84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQR  163 (534)
T ss_pred             HHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchh
Confidence                     36999999987655544332111   1122222    345678889999999753  24567899999999


Q ss_pred             HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCCh
Q 024529          181 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTF  256 (266)
Q Consensus       181 qRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~  256 (266)
                      |||.||.||+.+|++||.||||.+||..-..+|++.|++    .+.++++||||+..+.++||||+||.+|+++ ..|+.
T Consensus       164 QRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~iv-E~~~t  242 (534)
T COG4172         164 QRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIV-ETGTT  242 (534)
T ss_pred             hHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEe-ecCcH
Confidence            999999999999999999999999999988888887764    4679999999999999999999999999997 45655


Q ss_pred             hHH
Q 024529          257 HDY  259 (266)
Q Consensus       257 ~~~  259 (266)
                      +++
T Consensus       243 ~~l  245 (534)
T COG4172         243 ETL  245 (534)
T ss_pred             HHH
Confidence            543

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=2.7e-38  Score=266.49  Aligned_cols=191  Identities=28%  Similarity=0.355  Sum_probs=150.2

Q ss_pred             CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHH--HHHhC
Q 024529           69 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLY--MMRCF  146 (266)
Q Consensus        69 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~--~~~~~  146 (266)
                      ..+|+||||++++||.+||+|+||||||||+|+|+|.++|++|+|...++..  .+..-. .++....+..++  +....
T Consensus        40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~--~li~lg-~Gf~pelTGreNi~l~~~~  116 (249)
T COG1134          40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVA--PLIELG-AGFDPELTGRENIYLRGLI  116 (249)
T ss_pred             EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEe--hhhhcc-cCCCcccchHHHHHHHHHH
Confidence            4689999999999999999999999999999999999999999999988743  111110 112222222222  22222


Q ss_pred             CCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--
Q 024529          147 PGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--  220 (266)
Q Consensus       147 ~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--  220 (266)
                      .+.    .++.+.++.+...|. +..++|++++|-||+-|+++|.|...+|+|||+||-.+..|+.-.+.-.+.+.++  
T Consensus       117 ~G~~~~ei~~~~~eIieFaELG-~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~  195 (249)
T COG1134         117 LGLTRKEIDEKVDEIIEFAELG-DFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVE  195 (249)
T ss_pred             hCccHHHHHHHHHHHHHHHHHH-HHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHH
Confidence            222    234556667767775 4578999999999999999999999999999999999999998777665555443  


Q ss_pred             -CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHHHHh
Q 024529          221 -QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQ  264 (266)
Q Consensus       221 -~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~  264 (266)
                       +.|||+||||++.+.++||++++|++|++. +.|++++..+..+
T Consensus       196 ~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~-~~G~~~~vi~~Y~  239 (249)
T COG1134         196 KNKTIVLVSHDLGAIKQYCDRAIWLEHGQIR-MEGSPEEVIPAYE  239 (249)
T ss_pred             cCCEEEEEECCHHHHHHhcCeeEEEeCCEEE-EcCCHHHHHHHHH
Confidence             579999999999999999999999999997 7899988766544

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=100.00  E-value=1.3e-37  Score=301.91  Aligned_cols=193  Identities=22%  Similarity=0.292  Sum_probs=157.1

Q ss_pred             CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCC---ceEEEEcCee--------eEEEEeccccCCCCCCC
Q 024529           68 GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS---SGTVFRSAKV--------RIAVFSQHHVDGLDLSS  136 (266)
Q Consensus        68 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~~~~--------~i~~~~q~~~~~~~~~~  136 (266)
                      ++.+|+|+|+++++||+++|+|||||||||||++|+|..+|.   +|+|.+++..        .++|++|++..  ....
T Consensus        37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~--~~~l  114 (617)
T TIGR00955        37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLF--IPTL  114 (617)
T ss_pred             ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeecccccc--CccC
Confidence            456999999999999999999999999999999999998885   7999998853        47999998642  2223


Q ss_pred             cHHHHHH--HhC--C-CC----cHHHHHHHHHhcCCCcccccCCCC------CCChHHHHHHHHHHHHccCCCEEEEeCC
Q 024529          137 NPLLYMM--RCF--P-GV----PEQKLRAHLGSFGVTGNLALQPMY------TLSGGQKSRVAFAKITFKKPHIILLDEP  201 (266)
Q Consensus       137 ~~~~~~~--~~~--~-~~----~~~~~~~~l~~~~l~~~~~~~~~~------~LSgGqkqRv~lAral~~~p~lllLDEP  201 (266)
                      ++.+++.  ...  + ..    ..+++.++++.+|+.+ ..+.+++      .||||||||++||++|+.+|++|+||||
T Consensus       115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEP  193 (617)
T TIGR00955       115 TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRK-CANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEP  193 (617)
T ss_pred             cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchh-cCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCC
Confidence            4443332  111  1 11    1345788999999975 3456655      5999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHhhc---CCEEEEEecCHH-HHHhhcCEEEEEeCCeEEecCCChhHHHHHHh
Q 024529          202 SNHLDLDAVEALIQGLVLF---QGGILMVSHDEH-LISGSVEELWVVSEGKATPFHGTFHDYKKMLQ  264 (266)
Q Consensus       202 t~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~-~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~  264 (266)
                      |+|||+.+...+++.+++.   +.|||+++|++. .+...||++++|++|+++ +.|++++..+...
T Consensus       194 tsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v-~~G~~~~~~~~f~  259 (617)
T TIGR00955       194 TSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVA-YLGSPDQAVPFFS  259 (617)
T ss_pred             CcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEE-EECCHHHHHHHHH
Confidence            9999999999988887654   579999999985 677899999999999996 7899988766554

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=100.00  E-value=2e-37  Score=321.89  Aligned_cols=200  Identities=17%  Similarity=0.281  Sum_probs=161.5

Q ss_pred             CCcEEEEeeEEEcC---CCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC---CCceEEEEcCe-------e
Q 024529           53 PPIISFSDASFGYP---GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ---PSSGTVFRSAK-------V  119 (266)
Q Consensus        53 ~~~l~~~~l~~~y~---~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~~~-------~  119 (266)
                      ..+++++||++.|+   +.+.+|+|||+++++|++++|+|||||||||||++|+|+.+   |++|+|.++|.       .
T Consensus       757 ~~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~  836 (1394)
T TIGR00956       757 EDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQR  836 (1394)
T ss_pred             CceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhc
Confidence            34689999999994   23579999999999999999999999999999999999987   78999999874       2


Q ss_pred             eEEEEeccccCCCCCCCcHHHHHHH--h--CC-CCc----HHHHHHHHHhcCCCcccccCCCC----CCChHHHHHHHHH
Q 024529          120 RIAVFSQHHVDGLDLSSNPLLYMMR--C--FP-GVP----EQKLRAHLGSFGVTGNLALQPMY----TLSGGQKSRVAFA  186 (266)
Q Consensus       120 ~i~~~~q~~~~~~~~~~~~~~~~~~--~--~~-~~~----~~~~~~~l~~~~l~~~~~~~~~~----~LSgGqkqRv~lA  186 (266)
                      .++|++|+...  ....++.+.+..  .  .+ ...    .+++.++++.+++.+ ..++.++    .||||||||++||
T Consensus       837 ~i~yv~Q~~~~--~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~-~~d~~v~~~~~~LSgGqrqRl~Ia  913 (1394)
T TIGR00956       837 SIGYVQQQDLH--LPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMES-YADAVVGVPGEGLNVEQRKRLTIG  913 (1394)
T ss_pred             ceeeecccccC--CCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh-hCCCeeCCCCCCCCHHHhhHHHHH
Confidence            58999998532  223344443321  1  11 111    245788999999974 4566665    7999999999999


Q ss_pred             HHHccCCC-EEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHH-HHhhcCEEEEEeCC-eEEecCCCh
Q 024529          187 KITFKKPH-IILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHL-ISGSVEELWVVSEG-KATPFHGTF  256 (266)
Q Consensus       187 ral~~~p~-lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~-~~~~~d~i~~l~~G-~i~~~~g~~  256 (266)
                      ++|+.+|+ ||+|||||+|||+.+...+++.|++.   +.|||++||+++. +...||++++|++| +++ +.|+.
T Consensus       914 ~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv-~~G~~  988 (1394)
T TIGR00956       914 VELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTV-YFGDL  988 (1394)
T ss_pred             HHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEE-EECCc
Confidence            99999997 99999999999999999988887654   5799999999986 44679999999997 886 67775

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.2e-38  Score=290.62  Aligned_cols=202  Identities=30%  Similarity=0.454  Sum_probs=158.5

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe--eeEE-EEeccccC
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--VRIA-VFSQHHVD  130 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~--~~i~-~~~q~~~~  130 (266)
                      .-|.+.+++..|+ ++.+|++-++++..|..+||+|+||+|||||||+|+-      |.|.....  ...+ +++.. ..
T Consensus        79 ~Di~~~~fdLa~G-~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~~~-~~  150 (582)
T KOG0062|consen   79 KDIHIDNFDLAYG-GKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTEAL-QS  150 (582)
T ss_pred             cceeeeeeeeeec-chhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchHHH-hh
Confidence            3589999999994 6789999999999999999999999999999999986      33321110  0001 11100 01


Q ss_pred             CCCCCCcHHHHHHHh---CCCCcHHHHHH-HHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q 024529          131 GLDLSSNPLLYMMRC---FPGVPEQKLRA-HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD  206 (266)
Q Consensus       131 ~~~~~~~~~~~~~~~---~~~~~~~~~~~-~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD  206 (266)
                      .+........++...   ......+++.. +|..+|+++++..+|.++||||.|.|++|||||..+|+|||||||||+||
T Consensus       151 ~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLD  230 (582)
T KOG0062|consen  151 VLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLD  230 (582)
T ss_pred             hhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccch
Confidence            111111112222111   11113344555 89999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHHHH
Q 024529          207 LDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKML  263 (266)
Q Consensus       207 ~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~  263 (266)
                      ..++.|+.++|..++.|+|+||||..|+..+|..|+.+++-++-.|.|++++|.+..
T Consensus       231 v~av~WLe~yL~t~~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk~k  287 (582)
T KOG0062|consen  231 VVAVAWLENYLQTWKITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVKTK  287 (582)
T ss_pred             hHHHHHHHHHHhhCCceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHHhh
Confidence            999999999999999999999999999999999999999999988999999997654

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=100.00  E-value=9.5e-37  Score=261.67  Aligned_cols=179  Identities=22%  Similarity=0.256  Sum_probs=125.8

Q ss_pred             CCcceeeceEEEeCCcEEEEECCCCchHHHHH-HHHhC--------------------CCCCCceEEEEcCeeeEEEEec
Q 024529           68 GPILFKNLNFGIDLDSRIAMVGPNGIGKSTIL-KLIAG--------------------ELQPSSGTVFRSAKVRIAVFSQ  126 (266)
Q Consensus        68 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl-~~l~G--------------------l~~p~~G~i~~~~~~~i~~~~q  126 (266)
                      +..+|+++||+|++||+++|+||||||||||+ .+|..                    +..|..+.+.  + ....+..+
T Consensus         7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~   83 (226)
T cd03270           7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDSIE--G-LSPAIAID   83 (226)
T ss_pred             hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCcccccccc--C-CCceEEec
Confidence            45689999999999999999999999999996 33321                    1112211110  0 11233333


Q ss_pred             cccCCCCCCCcHH------HHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCC--CEEEE
Q 024529          127 HHVDGLDLSSNPL------LYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP--HIILL  198 (266)
Q Consensus       127 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p--~lllL  198 (266)
                      ++........+..      ..+...+.........+.++.+++.+...++++.+|||||+||++|||||+.+|  ++|||
T Consensus        84 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llll  163 (226)
T cd03270          84 QKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVL  163 (226)
T ss_pred             CCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEE
Confidence            3322222221211      111111111112233578999999753467889999999999999999999998  59999


Q ss_pred             eCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHHhhcCEEEEE------eCCeEE
Q 024529          199 DEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVV------SEGKAT  250 (266)
Q Consensus       199 DEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~~~~~~d~i~~l------~~G~i~  250 (266)
                      ||||++||+.++..+.+.+.+   .+.|||+||||++++. +||++++|      ++|+++
T Consensus       164 DEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~-~~d~i~~l~~~~~~~~G~iv  223 (226)
T cd03270         164 DEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIR-AADHVIDIGPGAGVHGGEIV  223 (226)
T ss_pred             eCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHH-hCCEEEEeCCCccccCCEEE
Confidence            999999999999988887754   3679999999999985 89999999      889886

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=100.00  E-value=9.8e-37  Score=318.71  Aligned_cols=184  Identities=25%  Similarity=0.436  Sum_probs=147.2

Q ss_pred             cceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCC
Q 024529           70 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGV  149 (266)
Q Consensus        70 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~  149 (266)
                      ++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++  .++|++|++..   +..+..+++.... ..
T Consensus       440 ~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g--~iayv~Q~~~l---~~~Ti~eNI~~g~-~~  513 (1490)
T TIGR01271       440 PVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG--RISFSPQTSWI---MPGTIKDNIIFGL-SY  513 (1490)
T ss_pred             cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC--EEEEEeCCCcc---CCccHHHHHHhcc-cc
Confidence            589999999999999999999999999999999999999999999887  59999998753   2235666554221 12


Q ss_pred             cHHHHHHHHHhcCCCcc----------cccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH-Hh
Q 024529          150 PEQKLRAHLGSFGVTGN----------LALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQG-LV  218 (266)
Q Consensus       150 ~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~-l~  218 (266)
                      +..+..++++.+++.++          ....++.+||||||||++||||++.+|+++||||||++||+.+...+++. +.
T Consensus       514 ~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~  593 (1490)
T TIGR01271       514 DEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLC  593 (1490)
T ss_pred             chHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            23334444444333221          12345679999999999999999999999999999999999999998874 44


Q ss_pred             hc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          219 LF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       219 ~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      ..  +.|+|+|||+++.+. .||++++|++|+++ ..|+++++.+
T Consensus       594 ~~~~~~tvilvtH~~~~~~-~ad~ii~l~~g~i~-~~g~~~~l~~  636 (1490)
T TIGR01271       594 KLMSNKTRILVTSKLEHLK-KADKILLLHEGVCY-FYGTFSELQA  636 (1490)
T ss_pred             HHhcCCeEEEEeCChHHHH-hCCEEEEEECCEEE-EEcCHHHHHh
Confidence            32  579999999999987 49999999999996 6788887753

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=2.8e-37  Score=249.41  Aligned_cols=205  Identities=25%  Similarity=0.343  Sum_probs=166.5

Q ss_pred             CcEEEEeeEEEcCCC--------CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-------
Q 024529           54 PIISFSDASFGYPGG--------PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------  118 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~--------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------  118 (266)
                      +.++++|+++.|...        ..+++.|||++++|+.+||+|.||||||||.|+|+|.++|++|+|.++++       
T Consensus         3 ~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy   82 (267)
T COG4167           3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDY   82 (267)
T ss_pred             chhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccch
Confidence            468899999888421        24789999999999999999999999999999999999999999998874       


Q ss_pred             ----eeEEEEeccccCCCCCCCcH---HHHHHHhC----CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHH
Q 024529          119 ----VRIAVFSQHHVDGLDLSSNP---LLYMMRCF----PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAK  187 (266)
Q Consensus       119 ----~~i~~~~q~~~~~~~~~~~~---~~~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAr  187 (266)
                          ..|-++||++...++...+.   ++.-.+..    +....+++.+.|..+|+-++..+.++..||-||||||+|||
T Consensus        83 ~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLAR  162 (267)
T COG4167          83 SFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALAR  162 (267)
T ss_pred             HhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHH
Confidence                25778899875444332221   11111111    11234567888999999888888899999999999999999


Q ss_pred             HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529          188 ITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  259 (266)
Q Consensus       188 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  259 (266)
                      ||+.+|+|+|.||..++||...+.++++.+.+    .+.+-|.|+.++..+..++|.|+||++|++++ .|...++
T Consensus       163 ALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE-~G~t~~v  237 (267)
T COG4167         163 ALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVE-RGSTADV  237 (267)
T ss_pred             HHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceee-cCChhhh
Confidence            99999999999999999999998888876543    46689999999999999999999999999985 4665554

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=7.1e-37  Score=252.67  Aligned_cols=195  Identities=27%  Similarity=0.362  Sum_probs=154.6

Q ss_pred             cEEEEeeEEEcCCC----CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee-----------
Q 024529           55 IISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-----------  119 (266)
Q Consensus        55 ~l~~~~l~~~y~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-----------  119 (266)
                      |+.+.|+++.|..+    +++|+++|++|+.|+++.|+|.||||||||+++|+|-+.|++|+|.+++..           
T Consensus         1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~   80 (263)
T COG1101           1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRAN   80 (263)
T ss_pred             CcccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhh
Confidence            45677777776432    468999999999999999999999999999999999999999999988742           


Q ss_pred             eEEEEeccccCCCCCCCcHHHHHHHhC-----CCC----c---HHHHHHHHHhc--CCCcccccCCCCCCChHHHHHHHH
Q 024529          120 RIAVFSQHHVDGLDLSSNPLLYMMRCF-----PGV----P---EQKLRAHLGSF--GVTGNLALQPMYTLSGGQKSRVAF  185 (266)
Q Consensus       120 ~i~~~~q~~~~~~~~~~~~~~~~~~~~-----~~~----~---~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqRv~l  185 (266)
                      .++-++|+|..+.....+..+++..+.     .+.    .   ....++.++.+  |+. ...+.++.-|||||||-++|
T Consensus        81 ~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLe-nrL~~~iglLSGGQRQalsL  159 (263)
T COG1101          81 LLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLE-NRLSDRIGLLSGGQRQALSL  159 (263)
T ss_pred             HHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchh-hhhcChhhhccchHHHHHHH
Confidence            366789998655444445444443211     011    1   12234445544  444 34567889999999999999


Q ss_pred             HHHHccCCCEEEEeCCCCCCCHHHHHHHHHH----HhhcCCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529          186 AKITFKKPHIILLDEPSNHLDLDAVEALIQG----LVLFQGGILMVSHDEHLISGSVEELWVVSEGKAT  250 (266)
Q Consensus       186 Aral~~~p~lllLDEPt~~LD~~~~~~l~~~----l~~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~  250 (266)
                      +.|-+++|+||+|||-|++|||.+.+.+++.    +.+.+.|.+||||+++.+..|.+|.++|++|+|+
T Consensus       160 ~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~Iv  228 (263)
T COG1101         160 LMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIV  228 (263)
T ss_pred             HHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEE
Confidence            9999999999999999999999998888764    3455779999999999999999999999999986

>PLN03140 ABC transporter G family member; Provisional

Probab=100.00  E-value=2.2e-36  Score=313.82  Aligned_cols=198  Identities=19%  Similarity=0.261  Sum_probs=158.6

Q ss_pred             cEEEEeeEEEcC------------CCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC--CceEEEEcCe--
Q 024529           55 IISFSDASFGYP------------GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP--SSGTVFRSAK--  118 (266)
Q Consensus        55 ~l~~~~l~~~y~------------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~~~--  118 (266)
                      .++.+||++.++            +.+.+|+|+|+++++|++++|+|||||||||||++|+|..++  .+|+|.+++.  
T Consensus       867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~  946 (1470)
T PLN03140        867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK  946 (1470)
T ss_pred             eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence            589999998873            123689999999999999999999999999999999999763  7899998763  


Q ss_pred             ------eeEEEEeccccCCCCCCCcHHHHHHH----hCC-CCc----HHHHHHHHHhcCCCcccccCCC-----CCCChH
Q 024529          119 ------VRIAVFSQHHVDGLDLSSNPLLYMMR----CFP-GVP----EQKLRAHLGSFGVTGNLALQPM-----YTLSGG  178 (266)
Q Consensus       119 ------~~i~~~~q~~~~~~~~~~~~~~~~~~----~~~-~~~----~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG  178 (266)
                            ..++|++|+...  ....++.+.+..    ..+ ..+    .+.+.++++.+++.+ ..++.+     +.||||
T Consensus       947 ~~~~~~~~igyv~Q~d~~--~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~-~~~~~vg~~~~~~LSgG 1023 (1470)
T PLN03140        947 KQETFARISGYCEQNDIH--SPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDN-LKDAIVGLPGVTGLSTE 1023 (1470)
T ss_pred             ChHHhhhheEEEcccccc--CCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChh-HhCCccCCCCCCCcCHH
Confidence                  248999998532  223344443321    111 112    234778999999974 445554     589999


Q ss_pred             HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHH-HHHhhcCEEEEEeC-CeEEecC
Q 024529          179 QKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEH-LISGSVEELWVVSE-GKATPFH  253 (266)
Q Consensus       179 qkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~-~~~~~~d~i~~l~~-G~i~~~~  253 (266)
                      |||||+||++|+.+|+||+|||||+|||+.+...+++.|++.   +.|||++||+++ .+...||++++|++ |+++ +.
T Consensus      1024 erkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v-~~ 1102 (1470)
T PLN03140       1024 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVI-YS 1102 (1470)
T ss_pred             HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEE-EE
Confidence            999999999999999999999999999999999988887654   679999999998 46778999999996 8886 67


Q ss_pred             CCh
Q 024529          254 GTF  256 (266)
Q Consensus       254 g~~  256 (266)
                      |+.
T Consensus      1103 G~~ 1105 (1470)
T PLN03140       1103 GPL 1105 (1470)
T ss_pred             CCc
Confidence            875

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.5e-37  Score=249.70  Aligned_cols=177  Identities=27%  Similarity=0.459  Sum_probs=141.9

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeee----------EEEE
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR----------IAVF  124 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~----------i~~~  124 (266)
                      +++.+|++... +...+|.++||++.+||++.|.||||||||||||+|+|+.+|++|+|++.+...          .-|+
T Consensus         2 ~L~a~~L~~~R-~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yL   80 (209)
T COG4133           2 MLEAENLSCER-GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYL   80 (209)
T ss_pred             cchhhhhhhcc-CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHh
Confidence            57788999888 456799999999999999999999999999999999999999999999875421          1122


Q ss_pred             eccccCCCCCCCcHHHHHH--H-hCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 024529          125 SQHHVDGLDLSSNPLLYMM--R-CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP  201 (266)
Q Consensus       125 ~q~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEP  201 (266)
                      ...  ..+....+.++++.  . .+...+...+.++++.+|+.+ ..+.|+.+||-|||+||+|||.++..++++|||||
T Consensus        81 GH~--~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g-~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP  157 (209)
T COG4133          81 GHQ--PGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAG-LEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEP  157 (209)
T ss_pred             hcc--ccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCccc-ccccchhhcchhHHHHHHHHHHHcCCCCceeecCc
Confidence            221  22233334444432  2 222245678899999999985 56899999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHH
Q 024529          202 SNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLIS  235 (266)
Q Consensus       202 t~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~~~  235 (266)
                      |++||..+...+-..+..   .++.||.+||..-.+.
T Consensus       158 ~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~  194 (209)
T COG4133         158 FTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIA  194 (209)
T ss_pred             ccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCC
Confidence            999999999888777764   3567999999876554

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.6e-36  Score=271.40  Aligned_cols=204  Identities=25%  Similarity=0.381  Sum_probs=170.4

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEE
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA  122 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~  122 (266)
                      ..+.+.+++|.|.+.+++|+++||++++|+.++++||+|+||||++++|..++++.+|.|..+++           ..||
T Consensus       261 g~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg  340 (497)
T COG5265         261 GAVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIG  340 (497)
T ss_pred             ceEEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhC
Confidence            35899999999987889999999999999999999999999999999999999999999998875           2499


Q ss_pred             EEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccC----------CCCCCChHHHHHHHHHHHHccC
Q 024529          123 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQ----------PMYTLSGGQKSRVAFAKITFKK  192 (266)
Q Consensus       123 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~~LSgGqkqRv~lAral~~~  192 (266)
                      .+||+...   +..+...+.....+....+++..+++...+.+.....          ..-.|||||||||+|||+++.+
T Consensus       341 ~VPQDtvL---FNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~  417 (497)
T COG5265         341 IVPQDTVL---FNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKN  417 (497)
T ss_pred             cCccccee---hhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcC
Confidence            99998642   2334444444444456677777777766654333222          2346999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHHH
Q 024529          193 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM  262 (266)
Q Consensus       193 p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~  262 (266)
                      |+||+|||.||+||..+.+++...|.+.  +.|-+++.|.+..+.. ||.|++|++|+|+ ..|+.+++...
T Consensus       418 p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~-adeiivl~~g~i~-erg~h~~ll~~  487 (497)
T COG5265         418 PPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIID-ADEIIVLDNGRIV-ERGTHEELLAA  487 (497)
T ss_pred             CCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccC-CceEEEeeCCEEE-ecCcHHHHHHc
Confidence            9999999999999999999999988764  5699999999999985 9999999999997 58998887653

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=100.00  E-value=2e-36  Score=277.57  Aligned_cols=201  Identities=27%  Similarity=0.429  Sum_probs=159.9

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCC--
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGL--  132 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~--  132 (266)
                      -+.++|+++.|. +..+++|+.|++.+|+.+||+|+|||||||+|++|+|-..|..-.+.+      ..+.++.....  
T Consensus        75 dvk~~sls~s~~-g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~------y~ls~e~~ps~~~  147 (614)
T KOG0927|consen   75 DVKIESLSLSFH-GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDF------YLLSREIEPSEKQ  147 (614)
T ss_pred             cceeeeeeeccC-CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccch------hhhcccCCCchHH
Confidence            589999999995 567899999999999999999999999999999999998886544321      11111110000  


Q ss_pred             -----C-CCCc----------------------HHHHHHH----hCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHH
Q 024529          133 -----D-LSSN----------------------PLLYMMR----CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQK  180 (266)
Q Consensus       133 -----~-~~~~----------------------~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqk  180 (266)
                           . ....                      .......    ......+.++..+|..+|+...+.++++.+|||||+
T Consensus       148 av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwr  227 (614)
T KOG0927|consen  148 AVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWR  227 (614)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHH
Confidence                 0 0000                      0000000    001122445667788889888888899999999999


Q ss_pred             HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCC-EEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529          181 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQG-GILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  259 (266)
Q Consensus       181 qRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  259 (266)
                      .|++|||+|+.+|++|||||||||||++++.+|.++|.++.. ++++++|+.+++..+|++|+.+++++.+.|.||+++|
T Consensus       228 mR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnydqy  307 (614)
T KOG0927|consen  228 MRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYDQY  307 (614)
T ss_pred             HHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhhheecccceeeecCCHHHH
Confidence            999999999999999999999999999999999999999987 8999999999999999999999999988899999999


Q ss_pred             HHH
Q 024529          260 KKM  262 (266)
Q Consensus       260 ~~~  262 (266)
                      ...
T Consensus       308 ~~t  310 (614)
T KOG0927|consen  308 VKT  310 (614)
T ss_pred             hhH
Confidence            643

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=100.00  E-value=2e-35  Score=306.92  Aligned_cols=192  Identities=19%  Similarity=0.221  Sum_probs=152.6

Q ss_pred             CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCC----CCCceEEEEcCe----------eeEEEEeccccCCCCC
Q 024529           69 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL----QPSSGTVFRSAK----------VRIAVFSQHHVDGLDL  134 (266)
Q Consensus        69 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~~~----------~~i~~~~q~~~~~~~~  134 (266)
                      +.+|+|+|+++++||+++|+||||||||||||+|+|+.    +|++|+|.++|.          ..++|++|+....  .
T Consensus        74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~--~  151 (1394)
T TIGR00956        74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHF--P  151 (1394)
T ss_pred             ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccC--C
Confidence            56999999999999999999999999999999999986    579999998874          2389999985322  2


Q ss_pred             CCcHHHHHH---Hh-CC-----CCcH----HH-HHHHHHhcCCCcccccC-----CCCCCChHHHHHHHHHHHHccCCCE
Q 024529          135 SSNPLLYMM---RC-FP-----GVPE----QK-LRAHLGSFGVTGNLALQ-----PMYTLSGGQKSRVAFAKITFKKPHI  195 (266)
Q Consensus       135 ~~~~~~~~~---~~-~~-----~~~~----~~-~~~~l~~~~l~~~~~~~-----~~~~LSgGqkqRv~lAral~~~p~l  195 (266)
                      ..++.+.+.   .. .+     ....    ++ +..+++.+|+.+. .+.     .++.|||||||||+||++|+.+|+|
T Consensus       152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~v  230 (1394)
T TIGR00956       152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHT-RNTKVGNDFVRGVSGGERKRVSIAEASLGGAKI  230 (1394)
T ss_pred             CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccc-cCceeCCCcCCCCCcccchHHHHHHHHHhCCCE
Confidence            223333321   11 11     1111    12 3457899999743 333     4578999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCH-HHHHhhcCEEEEEeCCeEEecCCChhHHHHHHh
Q 024529          196 ILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDE-HLISGSVEELWVVSEGKATPFHGTFHDYKKMLQ  264 (266)
Q Consensus       196 llLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~-~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~  264 (266)
                      |+|||||+|||+.+...+++.|++.    +.|||+++|+. +.+..++|++++|++|+++ +.|+.++..+.++
T Consensus       231 lllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv-~~G~~~~~~~yF~  303 (1394)
T TIGR00956       231 QCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQI-YFGPADKAKQYFE  303 (1394)
T ss_pred             EEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEE-EECCHHHHHHHHH
Confidence            9999999999999999988887653    56899999996 7888899999999999996 7899888766654

>PTZ00243 ABC transporter; Provisional

Probab=100.00  E-value=2.8e-35  Score=308.35  Aligned_cols=184  Identities=21%  Similarity=0.359  Sum_probs=146.3

Q ss_pred             CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCC
Q 024529           69 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPG  148 (266)
Q Consensus        69 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~  148 (266)
                      +.+|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|...  ..++|++|++..   +..+..+++.... .
T Consensus       673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~--~~i~yv~Q~~~l---~~~Tv~enI~~~~-~  746 (1560)
T PTZ00243        673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE--RSIAYVPQQAWI---MNATVRGNILFFD-E  746 (1560)
T ss_pred             ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC--CeEEEEeCCCcc---CCCcHHHHHHcCC-h
Confidence            458999999999999999999999999999999999999999999875  469999998742   2345555553221 1


Q ss_pred             CcHHHHHHHHH---------hc--CCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 024529          149 VPEQKLRAHLG---------SF--GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL  217 (266)
Q Consensus       149 ~~~~~~~~~l~---------~~--~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l  217 (266)
                      .+.+++.++++         .+  |+.. ..+.++.+||||||||++|||||+.+|++|||||||++||+.+...+++.+
T Consensus       747 ~~~~~~~~~~~~~~l~~~l~~l~~g~~t-~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~  825 (1560)
T PTZ00243        747 EDAARLADAVRVSQLEADLAQLGGGLET-EIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEEC  825 (1560)
T ss_pred             hhHHHHHHHHHHhhhHHHHHHhhccchH-HhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHH
Confidence            22223333333         33  4432 235678899999999999999999999999999999999999888776643


Q ss_pred             -h-h-cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          218 -V-L-FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       218 -~-~-~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                       . . .+.|+|+|||+++++. .||+|++|++|++. +.|+++++.+
T Consensus       826 ~~~~~~~~TvIlvTH~~~~~~-~ad~ii~l~~G~i~-~~G~~~~l~~  870 (1560)
T PTZ00243        826 FLGALAGKTRVLATHQVHVVP-RADYVVALGDGRVE-FSGSSADFMR  870 (1560)
T ss_pred             HHHhhCCCEEEEEeCCHHHHH-hCCEEEEEECCEEE-EecCHHHHHh
Confidence             2 2 2579999999999986 69999999999996 7899888753

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=7.1e-37  Score=244.31  Aligned_cols=190  Identities=23%  Similarity=0.325  Sum_probs=153.1

Q ss_pred             cEEEEeeEEEcC----CC--CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe----------
Q 024529           55 IISFSDASFGYP----GG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------  118 (266)
Q Consensus        55 ~l~~~~l~~~y~----~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------  118 (266)
                      .|.++|++|+|-    ++  -++++++||+++.||++++-||||||||||||+|.|.|.|++|+|.+...          
T Consensus         4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~   83 (235)
T COG4778           4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE   83 (235)
T ss_pred             eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence            588899998883    22  35899999999999999999999999999999999999999999975421          


Q ss_pred             ---------eeEEEEeccccCCCCCCCcHH----HHHHHh-C-CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHH
Q 024529          119 ---------VRIAVFSQHHVDGLDLSSNPL----LYMMRC-F-PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRV  183 (266)
Q Consensus       119 ---------~~i~~~~q~~~~~~~~~~~~~----~~~~~~-~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv  183 (266)
                               ..+||+.|...  .......+    +.+... . ......++..+|.++++++.++..++.++||||+|||
T Consensus        84 pr~vl~vRr~TiGyVSQFLR--viPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRV  161 (235)
T COG4778          84 PREVLEVRRTTIGYVSQFLR--VIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRV  161 (235)
T ss_pred             hHHHHHHHHhhhHHHHHHHH--hccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheeh
Confidence                     24788888531  11111111    111111 1 1123456788999999999999999999999999999


Q ss_pred             HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHHhhcCEEEEEeC
Q 024529          184 AFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSE  246 (266)
Q Consensus       184 ~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~~~~~~d~i~~l~~  246 (266)
                      .|||.++.+-+||||||||+.||..++..+.+.+.+   .+.++|=|-||.+.-+.+|||++.+..
T Consensus       162 NIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~  227 (235)
T COG4778         162 NIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA  227 (235)
T ss_pred             hhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence            999999999999999999999999998888887764   356799999999999999999998754

>PLN03140 ABC transporter G family member; Provisional

Probab=100.00  E-value=1.2e-35  Score=308.43  Aligned_cols=194  Identities=22%  Similarity=0.272  Sum_probs=154.4

Q ss_pred             CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCC---ceEEEEcCe--------eeEEEEeccccCCCCCCCc
Q 024529           69 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS---SGTVFRSAK--------VRIAVFSQHHVDGLDLSSN  137 (266)
Q Consensus        69 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~~~--------~~i~~~~q~~~~~~~~~~~  137 (266)
                      +.+|+|+|+.|++|++++|+||||||||||||+|+|.++|+   +|+|.++|.        ..++|++|+.....  ..+
T Consensus       178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~--~lT  255 (1470)
T PLN03140        178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVG--VMT  255 (1470)
T ss_pred             ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCC--cCc
Confidence            46899999999999999999999999999999999999998   999998774        35899999853222  223


Q ss_pred             HHHHHH---HhC--C-------CCc-H---------------------------HHHHHHHHhcCCCccc----ccCCCC
Q 024529          138 PLLYMM---RCF--P-------GVP-E---------------------------QKLRAHLGSFGVTGNL----ALQPMY  173 (266)
Q Consensus       138 ~~~~~~---~~~--~-------~~~-~---------------------------~~~~~~l~~~~l~~~~----~~~~~~  173 (266)
                      +.+.+.   ...  .       ... .                           ..+..+++.+||.+..    .+..++
T Consensus       256 V~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~r  335 (1470)
T PLN03140        256 VKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIR  335 (1470)
T ss_pred             HHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcccc
Confidence            332221   110  0       000 0                           1135678899996432    245678


Q ss_pred             CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCH-HHHHhhcCEEEEEeCCe
Q 024529          174 TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDE-HLISGSVEELWVVSEGK  248 (266)
Q Consensus       174 ~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~-~~~~~~~d~i~~l~~G~  248 (266)
                      .|||||||||+||++|+.+|++|+|||||+|||+.+...+++.|++.    +.|+|+++|+. ..+..++|+|++|++|+
T Consensus       336 glSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~  415 (1470)
T PLN03140        336 GISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQ  415 (1470)
T ss_pred             CCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCce
Confidence            99999999999999999999999999999999999999998888654    56999999986 57888999999999999


Q ss_pred             EEecCCChhHHHHHHhc
Q 024529          249 ATPFHGTFHDYKKMLQS  265 (266)
Q Consensus       249 i~~~~g~~~~~~~~~~~  265 (266)
                      ++ +.|+.++..+..++
T Consensus       416 iv-y~G~~~~~~~yF~~  431 (1470)
T PLN03140        416 IV-YQGPRDHILEFFES  431 (1470)
T ss_pred             EE-EeCCHHHHHHHHHH
Confidence            96 78998887766543

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=1.2e-35  Score=233.03  Aligned_cols=187  Identities=26%  Similarity=0.415  Sum_probs=148.0

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCC---ceEEEEcCe---------eeEE
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS---SGTVFRSAK---------VRIA  122 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~~~---------~~i~  122 (266)
                      ++.++||+.+.++ .-+|.++||+|.+||++.|+||||||||||+..+.|.+.+.   +|+++.+++         ..+|
T Consensus         2 ~l~l~nvsl~l~g-~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~G   80 (213)
T COG4136           2 MLCLKNVSLRLPG-SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIG   80 (213)
T ss_pred             ceeeeeeeecCCC-ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhhee
Confidence            6889999998854 56899999999999999999999999999999999998874   799988764         3699


Q ss_pred             EEeccccC--CCCCCCcHHHHHHHhCC-CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 024529          123 VFSQHHVD--GLDLSSNPLLYMMRCFP-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD  199 (266)
Q Consensus       123 ~~~q~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLD  199 (266)
                      +++|+...  .+++..+....+..... ......+..+|++.|+++. .++.+.+||||||-||++-|+|+..|+.+|||
T Consensus        81 iLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~-f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLD  159 (213)
T COG4136          81 ILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGA-FHQDPATLSGGQRARVALLRALLAQPKALLLD  159 (213)
T ss_pred             eeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchh-hhcChhhcCcchHHHHHHHHHHHhCcceeeeC
Confidence            99999743  23333332211111111 1234457788999999864 56788999999999999999999999999999


Q ss_pred             CCCCCCCHHH----HHHHHHHHhhcCCEEEEEecCHHHHHhhcCEEEEE
Q 024529          200 EPSNHLDLDA----VEALIQGLVLFQGGILMVSHDEHLISGSVEELWVV  244 (266)
Q Consensus       200 EPt~~LD~~~----~~~l~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l  244 (266)
                      ||+|.||..-    +++++..++..+...|+||||.+.+. ...||+.+
T Consensus       160 EPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp-agsrVie~  207 (213)
T COG4136         160 EPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP-AGSRVIEM  207 (213)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC-CCCeeeee
Confidence            9999999865    45566666677778999999999887 46677655

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=8.2e-35  Score=294.41  Aligned_cols=205  Identities=19%  Similarity=0.340  Sum_probs=167.8

Q ss_pred             CCCCcEEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------
Q 024529           51 PGPPIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------  118 (266)
Q Consensus        51 ~~~~~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------  118 (266)
                      |....|+++|++.+|..+ +.+|+||||+|++||++||+|..|||||||+.+|..+..|.+|+|.+++.           
T Consensus      1134 P~~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLR 1213 (1381)
T KOG0054|consen 1134 PSKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLR 1213 (1381)
T ss_pred             CCCCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHH
Confidence            344579999999999644 67999999999999999999999999999999999999999999999874           


Q ss_pred             eeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccC----------CCCCCChHHHHHHHHHHH
Q 024529          119 VRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQ----------PMYTLSGGQKSRVAFAKI  188 (266)
Q Consensus       119 ~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~~LSgGqkqRv~lAra  188 (266)
                      .+++.+||+|...   ..+...++ .-+...+++++.++|+.+++.+.....          -..++|-||||.++||||
T Consensus      1214 srlsIIPQdPvLF---sGTvR~NL-DPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARA 1289 (1381)
T KOG0054|consen 1214 SRLSIIPQDPVLF---SGTVRFNL-DPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARA 1289 (1381)
T ss_pred             hcCeeeCCCCcee---cCcccccc-CcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHH
Confidence            4799999998532   22222111 011234577888888888775433222          246899999999999999


Q ss_pred             HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          189 TFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       189 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      |+++++||+|||+|+++|+++-..+.+.+++.  ++|||.|.|+++.+.. ||||+||++|++++| +++.++.+
T Consensus      1290 LLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd-~DrVlVld~G~v~Ef-dsP~~Ll~ 1362 (1381)
T KOG0054|consen 1290 LLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMD-SDRVLVLDAGRVVEF-DSPAELLS 1362 (1381)
T ss_pred             HhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhh-cCeEEEeeCCeEeec-CChHHHHh
Confidence            99999999999999999999988888888763  5799999999999996 999999999999865 66666653

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=6.7e-34  Score=287.84  Aligned_cols=202  Identities=24%  Similarity=0.400  Sum_probs=170.5

Q ss_pred             CCCcEEEEeeEEEcCC--CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEecccc
Q 024529           52 GPPIISFSDASFGYPG--GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHV  129 (266)
Q Consensus        52 ~~~~l~~~~l~~~y~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~  129 (266)
                      ....++++|.+++++.  ..+.|+||||+|++|+.+||+|+-|||||+||.+|.|..+..+|++.++|.  ++|++|.+.
T Consensus       515 ~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs--iaYv~Q~pW  592 (1381)
T KOG0054|consen  515 GENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS--VAYVPQQPW  592 (1381)
T ss_pred             CCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe--EEEeccccH
Confidence            4557999999999964  234899999999999999999999999999999999999999999999876  999999985


Q ss_pred             CCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccC----------CCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 024529          130 DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQ----------PMYTLSGGQKSRVAFAKITFKKPHIILLD  199 (266)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~~LSgGqkqRv~lAral~~~p~lllLD  199 (266)
                      .   ...+..+++.... ..++++.+++++.+.|..++.-.          +.-+||||||||++||||+.++++|+|||
T Consensus       593 I---~ngTvreNILFG~-~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLD  668 (1381)
T KOG0054|consen  593 I---QNGTVRENILFGS-PYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLD  668 (1381)
T ss_pred             h---hCCcHHHhhhcCc-cccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEc
Confidence            2   3445556554332 46788899999999887655433          34589999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHH-hhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          200 EPSNHLDLDAVEALIQGL-VLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       200 EPt~~LD~~~~~~l~~~l-~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      .|+|++|...-..+++.. ...  ++|+|+|||.++++. .||.|++|++|++. ..|+++++.+
T Consensus       669 DplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~-~ad~Iivl~~G~I~-~~Gty~el~~  731 (1381)
T KOG0054|consen  669 DPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLP-HADQIIVLKDGKIV-ESGTYEELLK  731 (1381)
T ss_pred             CcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhh-hCCEEEEecCCeEe-cccCHHHHHh
Confidence            999999999887776643 322  579999999999988 59999999999997 6899999874

>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]

Probab=100.00  E-value=6.9e-35  Score=292.03  Aligned_cols=207  Identities=25%  Similarity=0.356  Sum_probs=171.6

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------eeE
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI  121 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~i  121 (266)
                      ..+.++++++.|+....+++++||.|++||+.|++|+|||||||++++|.|..+|++|++++.+.            ..+
T Consensus       563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~i  642 (885)
T KOG0059|consen  563 SALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQL  642 (885)
T ss_pred             ceEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhc
Confidence            46899999999964433899999999999999999999999999999999999999999998553            249


Q ss_pred             EEEeccccCCCCCCCcHHHHHHHhCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEE
Q 024529          122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIIL  197 (266)
Q Consensus       122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll  197 (266)
                      ||+||.......++......+.....+..    .+.+...++.+++.+. .+++++.+|||+|+|+++|.|++.+|++++
T Consensus       643 GyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~-~~~~~~~ySgG~kRkLs~aialig~p~vi~  721 (885)
T KOG0059|consen  643 GYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPY-ANKQVRTYSGGNKRRLSFAIALIGDPSVIL  721 (885)
T ss_pred             ccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhh-hccchhhCCCcchhhHHHHHHHhcCCCEEE
Confidence            99999854333333333333322222322    3457888999999864 678899999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHHH
Q 024529          198 LDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM  262 (266)
Q Consensus       198 LDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~  262 (266)
                      |||||+|+||.+++.+++.+.+.   +++||++||.+++++..|||+.+|.+|++. .-|+.+++...
T Consensus       722 LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~-ciGs~q~LKsr  788 (885)
T KOG0059|consen  722 LDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLR-CIGSPQELKSR  788 (885)
T ss_pred             ecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeE-EecChHHHHhh
Confidence            99999999999999998887653   339999999999999999999999999996 56998888654

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=100.00  E-value=8.9e-34  Score=238.33  Aligned_cols=154  Identities=23%  Similarity=0.295  Sum_probs=123.5

Q ss_pred             eeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCce---------EEEEcC--------eeeEEEEeccccCCCCCC
Q 024529           73 KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG---------TVFRSA--------KVRIAVFSQHHVDGLDLS  135 (266)
Q Consensus        73 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G---------~i~~~~--------~~~i~~~~q~~~~~~~~~  135 (266)
                      ++++|++.+| +++|+||||||||||+++|+|+..|..|         ++.+.+        ...+++++|++...+  .
T Consensus        14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~--~   90 (197)
T cd03278          14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRY--S   90 (197)
T ss_pred             CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCce--e
Confidence            6789999999 9999999999999999999999876643         343322        246899999874321  0


Q ss_pred             CcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHH
Q 024529          136 SNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF----KKPHIILLDEPSNHLDLDAVE  211 (266)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~----~~p~lllLDEPt~~LD~~~~~  211 (266)
                                  ....+++.++++.   . ...++++.+||||||||++||++++    .+|+++||||||++||+....
T Consensus        91 ------------~~~~~~~~~~l~~---~-~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~  154 (197)
T cd03278          91 ------------IISQGDVSEIIEA---P-GKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVE  154 (197)
T ss_pred             ------------EEehhhHHHHHhC---C-CccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHH
Confidence                        0123456677776   2 3456788999999999999999986    567999999999999999999


Q ss_pred             HHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeC
Q 024529          212 ALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSE  246 (266)
Q Consensus       212 ~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~  246 (266)
                      .+.+.+.+.  +.+||+|||+++++. +||+++.+..
T Consensus       155 ~l~~~l~~~~~~~tiIiitH~~~~~~-~~d~v~~~~~  190 (197)
T cd03278         155 RFARLLKEFSKETQFIVITHRKGTME-AADRLYGVTM  190 (197)
T ss_pred             HHHHHHHHhccCCEEEEEECCHHHHh-hcceEEEEEe
Confidence            999888765  468999999999875 7999998864

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=4.6e-33  Score=268.79  Aligned_cols=207  Identities=21%  Similarity=0.324  Sum_probs=167.2

Q ss_pred             CcEEEEeeEEEcCCC----CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC---CceEEEEcCe--------
Q 024529           54 PIISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP---SSGTVFRSAK--------  118 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~~~--------  118 (266)
                      ..+.+++++...++.    +.+|++||.++++||+.||+||+||||||||++|+|....   .+|+|.++|+        
T Consensus        24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~  103 (613)
T KOG0061|consen   24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFR  103 (613)
T ss_pred             ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhh
Confidence            347888888887543    5799999999999999999999999999999999999864   7899999983        


Q ss_pred             eeEEEEeccccCCCCCCCcHHHHHH--H--hCCC-----CcHHHHHHHHHhcCCCcccccCCCC-----CCChHHHHHHH
Q 024529          119 VRIAVFSQHHVDGLDLSSNPLLYMM--R--CFPG-----VPEQKLRAHLGSFGVTGNLALQPMY-----TLSGGQKSRVA  184 (266)
Q Consensus       119 ~~i~~~~q~~~~~~~~~~~~~~~~~--~--~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGqkqRv~  184 (266)
                      ...||+.|+....  ...++.+.+.  .  ..+.     ...++++++++.+|+. ...+..++     .+|||||+||+
T Consensus       104 ~~s~yV~QdD~l~--~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~-~~~~t~ig~~~~rgiSGGErkRvs  180 (613)
T KOG0061|consen  104 KISGYVQQDDVLL--PTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLE-KCADTLIGNPGIRGLSGGERKRVS  180 (613)
T ss_pred             heeEEEccccccc--ccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCh-hhccceecCCCCCccccchhhHHH
Confidence            3589999986422  2334433332  1  1121     2346788999999997 45566664     59999999999


Q ss_pred             HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHH-HHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          185 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEH-LISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       185 lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~-~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      ||.-|+.+|.||+|||||+|||..+...+++.|+++   +.|||++=|.+. .+-...|++++|.+|+++ |.|++++..
T Consensus       181 ia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~v-y~G~~~~~~  259 (613)
T KOG0061|consen  181 IALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVV-YSGSPRELL  259 (613)
T ss_pred             HHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEE-EecCHHHHH
Confidence            999999999999999999999999998888877653   679999999984 466789999999999986 899988776


Q ss_pred             HHHh
Q 024529          261 KMLQ  264 (266)
Q Consensus       261 ~~~~  264 (266)
                      +.+.
T Consensus       260 ~ff~  263 (613)
T KOG0061|consen  260 EFFS  263 (613)
T ss_pred             HHHH
Confidence            6554

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=100.00  E-value=5.3e-32  Score=235.90  Aligned_cols=182  Identities=24%  Similarity=0.324  Sum_probs=129.9

Q ss_pred             ceeeceEEEeCCcEEEEECCCCchHHHHHHHHh--------CC--CCCCceEEEEcC--eeeEEEEeccccCCCCCCCcH
Q 024529           71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIA--------GE--LQPSSGTVFRSA--KVRIAVFSQHHVDGLDLSSNP  138 (266)
Q Consensus        71 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~--------Gl--~~p~~G~i~~~~--~~~i~~~~q~~~~~~~~~~~~  138 (266)
                      -|+|+|++|+.|.+++|+|+||||||||++.+.        +.  ..|..++.....  -..+-++.|.+... +...++
T Consensus        10 nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~-~~rs~~   88 (261)
T cd03271          10 NLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGR-TPRSNP   88 (261)
T ss_pred             cCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCC-CCCCcH
Confidence            489999999999999999999999999999662        11  123333322111  12345555654311 111111


Q ss_pred             HHH------HHHh------------------CC--------------------C-CcHHHHHHHHHhcCCCcccccCCCC
Q 024529          139 LLY------MMRC------------------FP--------------------G-VPEQKLRAHLGSFGVTGNLALQPMY  173 (266)
Q Consensus       139 ~~~------~~~~------------------~~--------------------~-~~~~~~~~~l~~~~l~~~~~~~~~~  173 (266)
                      ..+      ++..                  +.                    . ....++.++++.+|+.....++++.
T Consensus        89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~vgL~~l~l~~~~~  168 (261)
T cd03271          89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDVGLGYIKLGQPAT  168 (261)
T ss_pred             HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHcCCchhhhcCccc
Confidence            110      0000                  00                    0 0123456678889997534678899


Q ss_pred             CCChHHHHHHHHHHHHccC---CCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHHhhcCEEEEE---
Q 024529          174 TLSGGQKSRVAFAKITFKK---PHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVV---  244 (266)
Q Consensus       174 ~LSgGqkqRv~lAral~~~---p~lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~~~~~~d~i~~l---  244 (266)
                      +|||||+||++||++|+.+   |+++||||||+|||+..+..+.+.+.+   .+.|||+|||+++++. .||+++.|   
T Consensus       169 ~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~-~aD~ii~Lgp~  247 (261)
T cd03271         169 TLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIK-CADWIIDLGPE  247 (261)
T ss_pred             cCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEecCC
Confidence            9999999999999999996   799999999999999999988887765   3679999999999986 69999999   


Q ss_pred             ---eCCeEEecCCC
Q 024529          245 ---SEGKATPFHGT  255 (266)
Q Consensus       245 ---~~G~i~~~~g~  255 (266)
                         ++|+++ +.|+
T Consensus       248 ~g~~~G~iv-~~Gt  260 (261)
T cd03271         248 GGDGGGQVV-ASGT  260 (261)
T ss_pred             cCCCCCEEE-EeCC
Confidence               789986 5665

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.98  E-value=9.1e-32  Score=228.79  Aligned_cols=180  Identities=19%  Similarity=0.205  Sum_probs=128.9

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEe-CCcEEEEECCCCchHHHHHHHHhC-CCCCCceEEEEc----------CeeeEE
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGID-LDSRIAMVGPNGIGKSTILKLIAG-ELQPSSGTVFRS----------AKVRIA  122 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~-~Ge~~~l~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~----------~~~~i~  122 (266)
                      .|+++|+. .|.+.    .+++|+.. +|++++|+||||||||||+++|++ ++-+..+.....          ....++
T Consensus         5 ~i~l~nf~-~y~~~----~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~   79 (213)
T cd03279           5 KLELKNFG-PFREE----QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVS   79 (213)
T ss_pred             EEEEECCc-CcCCc----eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEE
Confidence            37888988 66432    56677654 589999999999999999999996 433433333211          123577


Q ss_pred             EEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHH--HHHhcCCCcccccCCCCCCChHHHHHHHHHHHHcc---------
Q 024529          123 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRA--HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK---------  191 (266)
Q Consensus       123 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~---------  191 (266)
                      +.+|.....+....         ..+.+.+...+  .+...++. ...++++.+|||||+||++|||||+.         
T Consensus        80 ~~f~~~~~~~~~~r---------~~gl~~~~~~~~~~l~~g~l~-~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~  149 (213)
T cd03279          80 FTFQLGGKKYRVER---------SRGLDYDQFTRIVLLPQGEFD-RFLARPVSTLSGGETFLASLSLALALSEVLQNRGG  149 (213)
T ss_pred             EEEEECCeEEEEEE---------ecCCCHHHHHHhhhhhhcchH-HHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccC
Confidence            77776521111000         01233333322  23334443 34567889999999999999999984         


Q ss_pred             -CCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeE
Q 024529          192 -KPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKA  249 (266)
Q Consensus       192 -~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i  249 (266)
                       +|+++||||||++||+.+...+.+.+.+.   +.|||+|||+++++..+||+++++++|.+
T Consensus       150 ~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~  211 (213)
T cd03279         150 ARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG  211 (213)
T ss_pred             CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence             57899999999999999999888777654   56999999999999999999999998853

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.97  E-value=3e-32  Score=215.48  Aligned_cols=122  Identities=36%  Similarity=0.553  Sum_probs=99.8

Q ss_pred             eeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEEEEeccccCCCCCCCcHHH
Q 024529           72 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAVFSQHHVDGLDLSSNPLL  140 (266)
Q Consensus        72 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~~~q~~~~~~~~~~~~~~  140 (266)
                      |+|+||+|++|++++|+|+||||||||+++|+|+++|++|.|.+++.           ..++|++|+...  ....+...
T Consensus         1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~tv~~   78 (137)
T PF00005_consen    1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQL--FPGLTVRE   78 (137)
T ss_dssp             EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCH--HTTSBHHH
T ss_pred             CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccccc--cccccccc
Confidence            68999999999999999999999999999999999999999998763           358999998432  12222333


Q ss_pred             HHHHhCCCCcHHHHHHHHHhcCCCcccccCC----CCCCChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 024529          141 YMMRCFPGVPEQKLRAHLGSFGVTGNLALQP----MYTLSGGQKSRVAFAKITFKKPHIILLDEPSN  203 (266)
Q Consensus       141 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----~~~LSgGqkqRv~lAral~~~p~lllLDEPt~  203 (266)
                      +       ....++.++++.+++.+ ..+..    +..||+|||||++||+||+.+|++||||||||
T Consensus        79 ~-------~~~~~~~~~l~~l~~~~-~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~  137 (137)
T PF00005_consen   79 N-------ESDERIEEVLKKLGLED-LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN  137 (137)
T ss_dssp             H-------HHHHHHHHHHHHTTHGG-GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred             c-------ccccccccccccccccc-ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence            2       23456778888888754 23344    49999999999999999999999999999997

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.97  E-value=1.8e-30  Score=245.08  Aligned_cols=188  Identities=26%  Similarity=0.340  Sum_probs=156.4

Q ss_pred             CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCC
Q 024529           53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGL  132 (266)
Q Consensus        53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~  132 (266)
                      +..|+++|++..-|++...++++||+|++||.+.|.||||||||||+|+|+|+-+--+|.|.......+-|+||.|+.. 
T Consensus       390 ~~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p-  468 (604)
T COG4178         390 DHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLP-  468 (604)
T ss_pred             cceeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCC-
Confidence            4679999999999887889999999999999999999999999999999999999999999888677799999997522 


Q ss_pred             CCCCcHHHHHHHh--CCCCcHHHHHHHHHhcCCCccccc------CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCC
Q 024529          133 DLSSNPLLYMMRC--FPGVPEQKLRAHLGSFGVTGNLAL------QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNH  204 (266)
Q Consensus       133 ~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~------~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~  204 (266)
                        ..+..+.+..-  ....+++++.++|.++|+.+ +..      +--..||+|||||+++||.|+++|++++|||.|++
T Consensus       469 --~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~-L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsA  545 (604)
T COG4178         469 --QGTLREALCYPNAAPDFSDAELVAVLHKVGLGD-LAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSA  545 (604)
T ss_pred             --CccHHHHHhCCCCCCCCChHHHHHHHHHcCcHH-HHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhc
Confidence              22433333211  11256788999999999863 221      12357999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhh--cCCEEEEEecCHHHHHhhcCEEEEEe
Q 024529          205 LDLDAVEALIQGLVL--FQGGILMVSHDEHLISGSVEELWVVS  245 (266)
Q Consensus       205 LD~~~~~~l~~~l~~--~~~tiiivtHd~~~~~~~~d~i~~l~  245 (266)
                      ||+.+...+.+.+++  .+.|||-|+|...... +.++.+.+.
T Consensus       546 LDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~-~h~~~l~l~  587 (604)
T COG4178         546 LDEETEDRLYQLLKEELPDATVISVGHRPTLWN-FHSRQLELL  587 (604)
T ss_pred             cChHHHHHHHHHHHhhCCCCEEEEeccchhhHH-HHhhheeec
Confidence            999999999999998  5779999999987765 566666554

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.97  E-value=1.2e-30  Score=225.92  Aligned_cols=180  Identities=20%  Similarity=0.228  Sum_probs=113.1

Q ss_pred             EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCC----------------CCCCceEEEEcCee
Q 024529           56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE----------------LQPSSGTVFRSAKV  119 (266)
Q Consensus        56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl----------------~~p~~G~i~~~~~~  119 (266)
                      |+++|.. +|+ +..++.+++     |++++|+||||||||||+++|+++                +.+.+|...  ...
T Consensus         4 i~~~nfk-sy~-~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~--~~~   74 (243)
T cd03272           4 VIIQGFK-SYK-DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSV--MSA   74 (243)
T ss_pred             EEEeCcc-Ccc-cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCC--ceE
Confidence            5566643 463 455777776     789999999999999999999844                333333100  001


Q ss_pred             eEEEEeccccCCCCCCCcH------HHHH---HHhCC-CCcHHHHHHHHHhcCCCc-------------------ccccC
Q 024529          120 RIAVFSQHHVDGLDLSSNP------LLYM---MRCFP-GVPEQKLRAHLGSFGVTG-------------------NLALQ  170 (266)
Q Consensus       120 ~i~~~~q~~~~~~~~~~~~------~~~~---~~~~~-~~~~~~~~~~l~~~~l~~-------------------~~~~~  170 (266)
                      .+.+.++++..........      ..+.   ...+. ....+++...+..+++..                   ...+.
T Consensus        75 ~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~  154 (243)
T cd03272          75 YVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQ  154 (243)
T ss_pred             EEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccc
Confidence            1222233211000000000      0000   00000 112233444444444421                   12346


Q ss_pred             CCCCCChHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEE
Q 024529          171 PMYTLSGGQKSRVAFAKITF----KKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVV  244 (266)
Q Consensus       171 ~~~~LSgGqkqRv~lAral~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l  244 (266)
                      ++.+||||||||++|||||+    .+|+++||||||++||+.+...+++.+.+.  +.+||++||+.+ +..+||++++|
T Consensus       155 ~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~-~~~~~d~i~~l  233 (243)
T cd03272         155 EMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPE-LLEVADKFYGV  233 (243)
T ss_pred             cccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHhhCCEEEEE
Confidence            78999999999999999996    368999999999999999999999988775  456888888865 56799999988


Q ss_pred             e
Q 024529          245 S  245 (266)
Q Consensus       245 ~  245 (266)
                      .
T Consensus       234 ~  234 (243)
T cd03272         234 K  234 (243)
T ss_pred             E
Confidence            5

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.97  E-value=3.1e-30  Score=232.89  Aligned_cols=185  Identities=24%  Similarity=0.325  Sum_probs=142.9

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCC
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD  133 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~  133 (266)
                      .+++-.++++.|+ + .-|+-=.=+|..||+++++||||-||||+.++|+|.++|++|.   ....+++|-||.....  
T Consensus       341 ~lv~y~~~~k~~g-~-F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~---~~~~~vSyKPQyI~~~--  413 (591)
T COG1245         341 TLVEYPDLKKTYG-D-FKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS---EEDLKVSYKPQYISPD--  413 (591)
T ss_pred             eeeecchheeecC-c-eEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC---CccceEeecceeecCC--
Confidence            4556666666663 2 2334344456778999999999999999999999999999998   5567899999975433  


Q ss_pred             CCCcHHHHHHHhCCC--CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH
Q 024529          134 LSSNPLLYMMRCFPG--VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVE  211 (266)
Q Consensus       134 ~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~  211 (266)
                      ...++...+......  .+..--.++++-+.+. .+.++++.+|||||.|||+||.||..+++++|||||+++||.+.+-
T Consensus       414 ~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~-~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~  492 (591)
T COG1245         414 YDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLE-DLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRI  492 (591)
T ss_pred             CCCcHHHHHHHhhhhhcccchhHHhhcCccchH-HHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHH
Confidence            344555554433221  1222345677888886 5678999999999999999999999999999999999999998766


Q ss_pred             HHHHHHh----hcCCEEEEEecCHHHHHhhcCEEEEEeC
Q 024529          212 ALIQGLV----LFQGGILMVSHDEHLISGSVEELWVVSE  246 (266)
Q Consensus       212 ~l~~~l~----~~~~tiiivtHd~~~~~~~~d~i~~l~~  246 (266)
                      .+.+.++    +...|.++|.||+.++.-++||+++++.
T Consensus       493 ~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~G  531 (591)
T COG1245         493 IVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEG  531 (591)
T ss_pred             HHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEec
Confidence            5555444    3467999999999999999999999963

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.97  E-value=2.7e-30  Score=229.86  Aligned_cols=191  Identities=23%  Similarity=0.316  Sum_probs=147.1

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCC
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD  133 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~  133 (266)
                      .-|+++|+.|.|+....-+..||++|++||++-|+|.||||||||++++.|+++|++|+|.++|+.         .+.-.
T Consensus       321 ~~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~p---------V~~e~  391 (546)
T COG4615         321 KTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKP---------VSAEQ  391 (546)
T ss_pred             cceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCcc---------CCCCC
Confidence            459999999999755456789999999999999999999999999999999999999999988752         11100


Q ss_pred             CCC------------cHHHHHHHhCCCCcHHHHHHHHHhcCCCccc--cc--CCCCCCChHHHHHHHHHHHHccCCCEEE
Q 024529          134 LSS------------NPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL--AL--QPMYTLSGGQKSRVAFAKITFKKPHIIL  197 (266)
Q Consensus       134 ~~~------------~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~--~~~~~LSgGqkqRv~lAral~~~p~lll  197 (266)
                      ...            ..+..+.......+.+.+..+|+++.+....  .+  -..-.||.|||+|+++.-||+-+.+|++
T Consensus       392 ledYR~LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv  471 (546)
T COG4615         392 LEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILV  471 (546)
T ss_pred             HHHHHHHHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEE
Confidence            000            0000011111114567777888877664211  11  2245799999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHH----HhhcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCC
Q 024529          198 LDEPSNHLDLDAVEALIQG----LVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHG  254 (266)
Q Consensus       198 LDEPt~~LD~~~~~~l~~~----l~~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g  254 (266)
                      +||=-+.-||.-++++.+.    +++.|+||+.||||-.... +|||++.+++|++.+..|
T Consensus       472 ~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~-~ADrll~~~~G~~~e~tg  531 (546)
T COG4615         472 LDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFI-HADRLLEMRNGQLSELTG  531 (546)
T ss_pred             eehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhh-hHHHHHHHhcCceeeccc
Confidence            9999999999999887664    5677999999999977655 799999999999976543

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=99.97  E-value=6.9e-31  Score=236.24  Aligned_cols=200  Identities=29%  Similarity=0.464  Sum_probs=160.1

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCC---CCCCceEEEEcCeeeEEEEeccccCC
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE---LQPSSGTVFRSAKVRIAVFSQHHVDG  131 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl---~~p~~G~i~~~~~~~i~~~~q~~~~~  131 (266)
                      -|.++|.+.+- .++.+|.|.||.|-.|..+|++||||-||||||+.|+.-   ++|.         ..+-++.|+....
T Consensus       264 DIKiEnF~ISA-~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpn---------IDvLlCEQEvvad  333 (807)
T KOG0066|consen  264 DIKIENFDISA-QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPN---------IDVLLCEQEVVAD  333 (807)
T ss_pred             cceeeeeeeec-ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCC---------CceEeeeeeeeec
Confidence            48899999887 456789999999999999999999999999999999753   3332         1233444432211


Q ss_pred             CCCCC-cH-----------------------------------HHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCC
Q 024529          132 LDLSS-NP-----------------------------------LLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTL  175 (266)
Q Consensus       132 ~~~~~-~~-----------------------------------~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L  175 (266)
                      -.... ++                                   +..+........+.+++.+|.-+|++..+.++|...+
T Consensus       334 ~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kF  413 (807)
T KOG0066|consen  334 STSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKF  413 (807)
T ss_pred             CcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCcccc
Confidence            00000 00                                   0001111112235678889999999999999999999


Q ss_pred             ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCC
Q 024529          176 SGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGT  255 (266)
Q Consensus       176 SgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~  255 (266)
                      |||.|.||+|||||...|.+|+|||||||||....-|+-++|..+..|++|||||..|+..+|+.|+.|++.++..|.|+
T Consensus       414 SGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFLD~VCtdIIHLD~qkLhyYrGN  493 (807)
T KOG0066|consen  414 SGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFLDSVCTDIIHLDNQKLHYYRGN  493 (807)
T ss_pred             CCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchHHHHHHHHhhhhhhhhhhhcch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999989999


Q ss_pred             hhHHHHHHh
Q 024529          256 FHDYKKMLQ  264 (266)
Q Consensus       256 ~~~~~~~~~  264 (266)
                      |.-|..+..
T Consensus       494 Y~~FKKmY~  502 (807)
T KOG0066|consen  494 YTLFKKMYA  502 (807)
T ss_pred             HHHHHHHHH
Confidence            988866543

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.97  E-value=2.4e-29  Score=233.22  Aligned_cols=195  Identities=22%  Similarity=0.353  Sum_probs=157.7

Q ss_pred             CCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------e
Q 024529           52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------V  119 (266)
Q Consensus        52 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~  119 (266)
                      +.+.+++++++..-     .++|+||++.+||++||.|--|||+|-|+++|.|..++.+|+|.++|+            .
T Consensus       260 ~~~~l~v~~l~~~~-----~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~  334 (500)
T COG1129         260 GEPVLEVRNLSGGG-----KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKA  334 (500)
T ss_pred             CCcEEEEecCCCCC-----ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHc
Confidence            45678999987532     479999999999999999999999999999999999999999999886            2


Q ss_pred             eEEEEecccc-CCCCCCCcHHHHH-----HHhCC--CC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHH
Q 024529          120 RIAVFSQHHV-DGLDLSSNPLLYM-----MRCFP--GV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAK  187 (266)
Q Consensus       120 ~i~~~~q~~~-~~~~~~~~~~~~~-----~~~~~--~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAr  187 (266)
                      .++|++.+.. .++....+...++     .....  -.    ..+.+.++.+.+++.-...+.++.+||||-+|||.|||
T Consensus       335 Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlar  414 (500)
T COG1129         335 GIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLAR  414 (500)
T ss_pred             CCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHH
Confidence            5899998753 3333333332222     11110  11    23346677888888765667899999999999999999


Q ss_pred             HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEe
Q 024529          188 ITFKKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATP  251 (266)
Q Consensus       188 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~  251 (266)
                      .|+.+|++|||||||.|+|..++.++.+.+.+   .+.+||++|-++.++..+||||++|++|+++.
T Consensus       415 wL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~  481 (500)
T COG1129         415 WLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVG  481 (500)
T ss_pred             HHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEE
Confidence            99999999999999999999988887776654   47899999999999999999999999999963

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.96  E-value=1.1e-29  Score=221.08  Aligned_cols=163  Identities=23%  Similarity=0.231  Sum_probs=119.2

Q ss_pred             CcEEEEECCCCchHHHHHHHHhCCCCCCc-eEEEEcC--------------eeeEEEEeccccCC-------CCCCCcHH
Q 024529           82 DSRIAMVGPNGIGKSTILKLIAGELQPSS-GTVFRSA--------------KVRIAVFSQHHVDG-------LDLSSNPL  139 (266)
Q Consensus        82 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~-G~i~~~~--------------~~~i~~~~q~~~~~-------~~~~~~~~  139 (266)
                      ..+++|+||||||||||+++|++++.+.. |++...+              ...+++++|++...       .....+..
T Consensus        25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~  104 (251)
T cd03273          25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT  104 (251)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence            56999999999999999999999988763 4554322              13678888874211       00010100


Q ss_pred             ----HHHHH-h-C--CCCcHHHHHHHHHhcCCCc-------------------ccccCCCCCCChHHHHHHHHHHHHc--
Q 024529          140 ----LYMMR-C-F--PGVPEQKLRAHLGSFGVTG-------------------NLALQPMYTLSGGQKSRVAFAKITF--  190 (266)
Q Consensus       140 ----~~~~~-~-~--~~~~~~~~~~~l~~~~l~~-------------------~~~~~~~~~LSgGqkqRv~lAral~--  190 (266)
                          ..... . .  .....+++.++|+.+++..                   ...+.++.+||||||||++||+||+  
T Consensus       105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~  184 (251)
T cd03273         105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALL  184 (251)
T ss_pred             EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHh
Confidence                00000 0 1  1123567888999999851                   2234678999999999999999997  


Q ss_pred             --cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEe
Q 024529          191 --KKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVS  245 (266)
Q Consensus       191 --~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~  245 (266)
                        .+|+++||||||++||+....++.+.+.+.  +.+||++||+.+... .||+++-+.
T Consensus       185 ~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~-~~d~v~~~~  242 (251)
T cd03273         185 LFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFN-NANVLFRTR  242 (251)
T ss_pred             hccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH-hCCEEEEEE
Confidence              578999999999999999999999988764  458999999976665 799998765

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.96  E-value=2.8e-29  Score=212.17  Aligned_cols=156  Identities=23%  Similarity=0.311  Sum_probs=114.8

Q ss_pred             ceEEEeCCcEEEEECCCCchHHHHHHHHh----CCCCCCceEEEEc--------CeeeEEEEeccc-cCCCCCCC--cHH
Q 024529           75 LNFGIDLDSRIAMVGPNGIGKSTILKLIA----GELQPSSGTVFRS--------AKVRIAVFSQHH-VDGLDLSS--NPL  139 (266)
Q Consensus        75 vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~----Gl~~p~~G~i~~~--------~~~~i~~~~q~~-~~~~~~~~--~~~  139 (266)
                      .++++.+| +++|+||||||||||+++|.    |...|+.|.+...        ....+++.+|++ ...+.+..  +.+
T Consensus        16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~   94 (204)
T cd03240          16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAIL   94 (204)
T ss_pred             eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHh
Confidence            35667777 99999999999999999994    9988888765311        124688888875 21111111  122


Q ss_pred             HHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHH------HHHHHHHccCCCEEEEeCCCCCCCHHHHH-H
Q 024529          140 LYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSR------VAFAKITFKKPHIILLDEPSNHLDLDAVE-A  212 (266)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqR------v~lAral~~~p~lllLDEPt~~LD~~~~~-~  212 (266)
                      .++.    .....++.+.+          ++++.+||+||+||      ++||||++.+|+++||||||++||+..+. .
T Consensus        95 ~~~~----~~~~~~~~~~~----------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~  160 (204)
T cd03240          95 ENVI----FCHQGESNWPL----------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEES  160 (204)
T ss_pred             hcee----eechHHHHHHH----------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHH
Confidence            2211    11222333222          56788999999996      78999999999999999999999999988 8


Q ss_pred             HHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeC
Q 024529          213 LIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSE  246 (266)
Q Consensus       213 l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~  246 (266)
                      +.+.+.+.    +.+||++||+++++. .||+++.|++
T Consensus       161 l~~~l~~~~~~~~~~iiiitH~~~~~~-~~d~i~~l~~  197 (204)
T cd03240         161 LAEIIEERKSQKNFQLIVITHDEELVD-AADHIYRVEK  197 (204)
T ss_pred             HHHHHHHHHhccCCEEEEEEecHHHHh-hCCEEEEEee
Confidence            88877653    458999999999876 6999999964

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.96  E-value=1e-30  Score=222.14  Aligned_cols=179  Identities=15%  Similarity=0.167  Sum_probs=118.9

Q ss_pred             EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCC
Q 024529           56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLS  135 (266)
Q Consensus        56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~  135 (266)
                      |+++|+. .|+ +..++++++|     ++++|+||||||||||+++|.-..-.+....   ....++++++........+
T Consensus         6 l~l~nfk-~~~-~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G~~~~~~---~~~~i~~~~~~~~~~~~~~   75 (212)
T cd03274           6 LVLENFK-SYA-GEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFGFRASKM---RQKKLSDLIHNSAGHPNLD   75 (212)
T ss_pred             EEEECcc-cCC-CCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHHhccCHHHh---hhhhHHHHhcCCCCCCCCc
Confidence            6778876 784 5568899987     8999999999999999999982211100000   0123445544431111111


Q ss_pred             CcH----------HHHHH-HhCCCCcHH---HHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHcc----CCCEEE
Q 024529          136 SNP----------LLYMM-RCFPGVPEQ---KLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK----KPHIIL  197 (266)
Q Consensus       136 ~~~----------~~~~~-~~~~~~~~~---~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~----~p~lll  197 (266)
                      ...          ...+. .........   ...++++.+++.+ ..++++..||+|||||++||+|++.    +|++++
T Consensus        76 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~-~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ili  154 (212)
T cd03274          76 SCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPK-KSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYV  154 (212)
T ss_pred             eEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeecccc-ccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEE
Confidence            000          00000 000000000   0134556677754 4566789999999999999999964    589999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeC
Q 024529          198 LDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSE  246 (266)
Q Consensus       198 LDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~  246 (266)
                      |||||++||+.++..+.+.+.+.  +.++|++||+. ++.++||++++|..
T Consensus       155 lDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~-~~~~~~d~v~~~~~  204 (212)
T cd03274         155 MDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRN-NMFELADRLVGIYK  204 (212)
T ss_pred             EcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcH-HHHHhCCEEEEEEe
Confidence            99999999999999999988876  35899999996 45679999999964

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.96  E-value=7.4e-30  Score=205.03  Aligned_cols=195  Identities=26%  Similarity=0.377  Sum_probs=150.1

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee-----------eEEE
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-----------RIAV  123 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-----------~i~~  123 (266)
                      ++.++||+..-     -|-.+|.++..||++-++|||||||||||-.++|+. |-+|+|.+.|..           .-+|
T Consensus         3 l~qln~v~~~t-----RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAY   76 (248)
T COG4138           3 LMQLNDVAEST-----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAY   76 (248)
T ss_pred             eeeeccccccc-----cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHH
Confidence            57788887543     267889999999999999999999999999999986 678999988752           2456


Q ss_pred             EeccccCCCCCCCcHHHHHHHhCCC-CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHcc-----C--CCE
Q 024529          124 FSQHHVDGLDLSSNPLLYMMRCFPG-VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK-----K--PHI  195 (266)
Q Consensus       124 ~~q~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~-----~--p~l  195 (266)
                      +.|+...  .+...++.++....+. .....+.++...+++++. ..+.+..|||||=|||-+|...++     |  .++
T Consensus        77 LsQqq~p--~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~DK-L~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~L  153 (248)
T COG4138          77 LSQQQTP--PFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDK-LGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQL  153 (248)
T ss_pred             HhhccCC--cchhhhhhhhhhcCchHHHHHHHHHHHhhhcccch-hhhhhhhcCcccceeeEEeEEEEEecCCCCcccee
Confidence            6665422  2233344444332222 123456677888999764 467889999999999999998764     3  469


Q ss_pred             EEEeCCCCCCCHHHHHHH---HHHHhhcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529          196 ILLDEPSNHLDLDAVEAL---IQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  259 (266)
Q Consensus       196 llLDEPt~~LD~~~~~~l---~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  259 (266)
                      ||+|||.|+||......+   +..+.+.+.+|||++||++--.+.+|++|.++.|++. ..|..++.
T Consensus       154 LllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~-~~G~~~eV  219 (248)
T COG4138         154 LLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLL-ASGRREEV  219 (248)
T ss_pred             EEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEE-eecchhhh
Confidence            999999999999866554   4555556789999999999999999999999999996 57877665

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.96  E-value=1.4e-28  Score=213.81  Aligned_cols=181  Identities=19%  Similarity=0.185  Sum_probs=121.0

Q ss_pred             EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcC----------------ee
Q 024529           56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA----------------KV  119 (266)
Q Consensus        56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~----------------~~  119 (266)
                      |+++|. +.|.+ ..     +|.+.++ +++|+||||||||||+.+|+++..+..|++....                ..
T Consensus         4 i~l~nf-~~~~~-~~-----~~~~~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~   75 (247)
T cd03275           4 LELENF-KSYKG-RH-----VIGPFDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSA   75 (247)
T ss_pred             EEEECc-cccCC-Ce-----eecCCCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceE
Confidence            677776 55632 21     2333344 9999999999999999999999887777664321                11


Q ss_pred             eE--EEEeccccCCC---CCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcc---------------------cccCCCC
Q 024529          120 RI--AVFSQHHVDGL---DLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGN---------------------LALQPMY  173 (266)
Q Consensus       120 ~i--~~~~q~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---------------------~~~~~~~  173 (266)
                      .+  .|..++.....   ........+. ..........+.++++.+++...                     ..++++.
T Consensus        76 ~v~~~f~~~~~~~~~~~~~~~~~~~~~~-ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~  154 (247)
T cd03275          76 YVTAVYEDDDGEEKTFRRIITGGSSSYR-INGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMD  154 (247)
T ss_pred             EEEEEEEcCCCcEEEEEEEEECCceEEE-ECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHH
Confidence            22  23222211000   0000000000 00112345566788888888421                     1123458


Q ss_pred             CCChHHHHHHHHHHHHccC----CCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeC
Q 024529          174 TLSGGQKSRVAFAKITFKK----PHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSE  246 (266)
Q Consensus       174 ~LSgGqkqRv~lAral~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~  246 (266)
                      +||+|||||++||++++.+    |+++||||||++||+.....+.+.+.+.   +.+||+|||+.+++ .+||++++|..
T Consensus       155 ~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~-~~~d~i~~~~~  233 (247)
T cd03275         155 NLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFF-SKADALVGVYR  233 (247)
T ss_pred             HcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHH-hhCCeEEEEEe
Confidence            9999999999999999864    8999999999999999999888888765   45899999998876 57999998863

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.96  E-value=1.8e-27  Score=237.35  Aligned_cols=106  Identities=25%  Similarity=0.357  Sum_probs=92.2

Q ss_pred             HHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEE
Q 024529          154 LRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP---HIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMV  227 (266)
Q Consensus       154 ~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p---~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiiv  227 (266)
                      ..+.++.+|+.....++++.+|||||+||+.||++|+.+|   +++||||||+|||+..+..+++.|.+.   +.|||+|
T Consensus       810 ~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIii  889 (943)
T PRK00349        810 KLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVI  889 (943)
T ss_pred             HHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence            4567888899743467889999999999999999999999   999999999999999999888877653   6799999


Q ss_pred             ecCHHHHHhhcCEEEEE------eCCeEEecCCChhHHHH
Q 024529          228 SHDEHLISGSVEELWVV------SEGKATPFHGTFHDYKK  261 (266)
Q Consensus       228 tHd~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~~  261 (266)
                      ||+++++. .||+++.|      ++|+++ +.|+++++.+
T Consensus       890 tH~~~~i~-~aD~ii~Lgp~~G~~~G~Iv-~~Gt~~el~~  927 (943)
T PRK00349        890 EHNLDVIK-TADWIIDLGPEGGDGGGEIV-ATGTPEEVAK  927 (943)
T ss_pred             ecCHHHHH-hCCEEEEecCCcCCCCCEEE-EeCCHHHHHh
Confidence            99999986 79999999      689986 6898888754

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.95  E-value=8.5e-28  Score=202.17  Aligned_cols=160  Identities=23%  Similarity=0.265  Sum_probs=116.3

Q ss_pred             eeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCc-----eE----EEEcC--eeeEEEEeccccCCCCCCCcHHH
Q 024529           72 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSS-----GT----VFRSA--KVRIAVFSQHHVDGLDLSSNPLL  140 (266)
Q Consensus        72 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~-----G~----i~~~~--~~~i~~~~q~~~~~~~~~~~~~~  140 (266)
                      ++++++++.+| +.+|+||||||||||+.+|........     |.    +...+  ...+.+.++....  ..  +.  
T Consensus        12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~--~~--~~--   84 (198)
T cd03276          12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGL--DA--NP--   84 (198)
T ss_pred             eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCc--cC--Cc--
Confidence            47778888887 889999999999999999974332221     11    00111  2345666655321  11  10  


Q ss_pred             HHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHH----ccCCCEEEEeCCCCCCCHHHHHHHHHH
Q 024529          141 YMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT----FKKPHIILLDEPSNHLDLDAVEALIQG  216 (266)
Q Consensus       141 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral----~~~p~lllLDEPt~~LD~~~~~~l~~~  216 (266)
                           ........+.++++.   . ...++++.+||+|||||++||+|+    +.+|+++||||||++||+.+...+.+.
T Consensus        85 -----~~~~~~~~~~~~l~~---~-~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~  155 (198)
T cd03276          85 -----LCVLSQDMARSFLTS---N-KAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDL  155 (198)
T ss_pred             -----CCHHHHHHHHHHhcc---c-cccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHH
Confidence                 111224566677766   2 345678899999999999999999    689999999999999999999888887


Q ss_pred             Hhhc-----C-CEEEEEecCHHHHHhhcCEEEEEeCCe
Q 024529          217 LVLF-----Q-GGILMVSHDEHLISGSVEELWVVSEGK  248 (266)
Q Consensus       217 l~~~-----~-~tiiivtHd~~~~~~~~d~i~~l~~G~  248 (266)
                      |.+.     + .+||++||+++.+..+ |+|.+|..++
T Consensus       156 l~~~~~~~~~~~~iii~th~~~~i~~~-d~v~~~~~~~  192 (198)
T cd03276         156 LVKEAKKQPGRQFIFITPQDISGLASS-DDVKVFRMKD  192 (198)
T ss_pred             HHHHHhcCCCcEEEEEECCcccccccc-cceeEEEecC
Confidence            7552     2 3799999999999875 9999998764

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.95  E-value=5.2e-27  Score=243.38  Aligned_cols=104  Identities=24%  Similarity=0.334  Sum_probs=90.1

Q ss_pred             HHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHc---cCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEec
Q 024529          156 AHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF---KKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSH  229 (266)
Q Consensus       156 ~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~---~~p~lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtH  229 (266)
                      ++++.+|+.+...++++.+|||||+||++||++|+   .+|++|||||||+|||+.++..+++.|.+   .+.|||+|||
T Consensus       791 ~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsH  870 (1809)
T PRK00635        791 HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEH  870 (1809)
T ss_pred             HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence            47888999643257899999999999999999997   69999999999999999999988887754   3679999999


Q ss_pred             CHHHHHhhcCEEEEEe------CCeEEecCCChhHHHH
Q 024529          230 DEHLISGSVEELWVVS------EGKATPFHGTFHDYKK  261 (266)
Q Consensus       230 d~~~~~~~~d~i~~l~------~G~i~~~~g~~~~~~~  261 (266)
                      +++++ .+||++++|.      +|+++ ..|+++++..
T Consensus       871 dl~~i-~~aDrVi~L~p~gg~~~G~iv-~~Gtpeel~~  906 (1809)
T PRK00635        871 NMHVV-KVADYVLELGPEGGNLGGYLL-ASCSPEELIH  906 (1809)
T ss_pred             CHHHH-HhCCEEEEEccCCCCCCCEEE-EeCCHHHHHh
Confidence            99999 6999999996      67886 6898888754

>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]

Probab=99.95  E-value=4.7e-27  Score=217.42  Aligned_cols=192  Identities=21%  Similarity=0.327  Sum_probs=153.3

Q ss_pred             CCCCcEEEEeeEEEcCC-CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee---eEEEEec
Q 024529           51 PGPPIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV---RIAVFSQ  126 (266)
Q Consensus        51 ~~~~~l~~~~l~~~y~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~---~i~~~~q  126 (266)
                      ++..+|++++|++.-|. +..+++|+||+|+.|+-+.|+||||||||+|||+|+|+-+..+|.+....+.   .+-|+||
T Consensus       429 ~~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQ  508 (659)
T KOG0060|consen  429 PADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQ  508 (659)
T ss_pred             cccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecC
Confidence            44578999999999887 6677899999999999999999999999999999999999999999765443   4899999


Q ss_pred             cccCCCCCCCcHHHHHHH-------hCCCCcHHHHHHHHHhcCCCccc----------ccCCCCCCChHHHHHHHHHHHH
Q 024529          127 HHVDGLDLSSNPLLYMMR-------CFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKIT  189 (266)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkqRv~lAral  189 (266)
                      .|+-  ... +..+.+..       .....+.+++...|+.+++.+-.          ...-...||+||+||+++||.+
T Consensus       509 rPYm--t~G-TLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLf  585 (659)
T KOG0060|consen  509 RPYM--TLG-TLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLF  585 (659)
T ss_pred             CCCc--ccc-chhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHH
Confidence            9852  221 22222110       01124456777777776654211          1112468999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcCEEEEEeC
Q 024529          190 FKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSE  246 (266)
Q Consensus       190 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~  246 (266)
                      .++|++-+|||.||++|.+...++.+.+++.+.|.|-|+|+..+.. +=|.++-|+.
T Consensus       586 y~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRkSL~k-fHd~~L~~~g  641 (659)
T KOG0060|consen  586 YHKPKFAILDECTSAVTEDVEGALYRKCREMGITFISVGHRKSLWK-FHDYVLRMDG  641 (659)
T ss_pred             hcCCceEEeechhhhccHHHHHHHHHHHHHcCCeEEEeccHHHHHh-hhhEEEEecC
Confidence            9999999999999999999999999999999999999999988765 6788888875

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.95  E-value=2e-26  Score=229.58  Aligned_cols=104  Identities=25%  Similarity=0.354  Sum_probs=89.8

Q ss_pred             HHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHcc---CCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEE
Q 024529          154 LRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK---KPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMV  227 (266)
Q Consensus       154 ~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~---~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiiv  227 (266)
                      ..++++.+||.....++++.+|||||+||+.||++|+.   +|+++||||||+|||+..+..+++.|.+.   +.|||++
T Consensus       808 ~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi  887 (924)
T TIGR00630       808 KLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVI  887 (924)
T ss_pred             HHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence            45677788986434578899999999999999999997   59999999999999999999888877654   6799999


Q ss_pred             ecCHHHHHhhcCEEEEE------eCCeEEecCCChhHH
Q 024529          228 SHDEHLISGSVEELWVV------SEGKATPFHGTFHDY  259 (266)
Q Consensus       228 tHd~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~  259 (266)
                      ||+++++. .||++++|      ++|+++ +.|+++++
T Consensus       888 ~H~~~~i~-~aD~ii~Lgp~~G~~gG~iv-~~G~~~~l  923 (924)
T TIGR00630       888 EHNLDVIK-TADYIIDLGPEGGDGGGTIV-ASGTPEEV  923 (924)
T ss_pred             eCCHHHHH-hCCEEEEecCCccCCCCEEE-EeCCHHHh
Confidence            99999986 69999999      689997 67888764

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.95  E-value=4.4e-26  Score=208.33  Aligned_cols=207  Identities=22%  Similarity=0.347  Sum_probs=165.7

Q ss_pred             CCCCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee----------
Q 024529           50 RPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV----------  119 (266)
Q Consensus        50 ~~~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~----------  119 (266)
                      .+++++|++++++..-..+...+++|||+|..||++||.|-.|-|-+.|+.+|+|+.+|.+|+|.++++.          
T Consensus       252 ~pg~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~  331 (501)
T COG3845         252 TPGEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRER  331 (501)
T ss_pred             CCCCeEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHH
Confidence            4567899999999876444467999999999999999999999999999999999999999999988753          


Q ss_pred             ---eEEEEecccc-CCCCCCCcHHHHHHH-hCC-------C-Cc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHH
Q 024529          120 ---RIAVFSQHHV-DGLDLSSNPLLYMMR-CFP-------G-VP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSR  182 (266)
Q Consensus       120 ---~i~~~~q~~~-~~~~~~~~~~~~~~~-~~~-------~-~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqR  182 (266)
                         .++|+|.+.. .++-+..+..+++.. .+.       . ..    ...+.++++.|++...-...++.+||||.+||
T Consensus       332 r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK  411 (501)
T COG3845         332 RRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQK  411 (501)
T ss_pred             HhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceeh
Confidence               4789998752 233333333333221 110       0 11    34456778888886444557789999999999


Q ss_pred             HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChh
Q 024529          183 VAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFH  257 (266)
Q Consensus       183 v~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~  257 (266)
                      +-+||-|..+|++||+.+||.|||..+.+.+.+.|.+   .+.+|+++|-|++++..+||||.+|.+|++. ...+++
T Consensus       412 ~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~-~~~~~~  488 (501)
T COG3845         412 LILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIV-GIVPPE  488 (501)
T ss_pred             hhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCcee-cccccc
Confidence            9999999999999999999999999999988887654   4678999999999999999999999999996 334433

>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]

Probab=99.94  E-value=2.4e-26  Score=189.09  Aligned_cols=196  Identities=22%  Similarity=0.250  Sum_probs=150.7

Q ss_pred             CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee-----------eE
Q 024529           53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-----------RI  121 (266)
Q Consensus        53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-----------~i  121 (266)
                      ...|++.+++|+|+...+++-|+|++++.|....++|.||||||||||+|+|-.-.-.|.|...++.           ..
T Consensus        11 ~~aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl   90 (291)
T KOG2355|consen   11 DFAIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDL   90 (291)
T ss_pred             cceEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCce
Confidence            3469999999999877789999999999999999999999999999999999766666888765541           13


Q ss_pred             EEEecccc-----C-CCCCCC-cHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 024529          122 AVFSQHHV-----D-GLDLSS-NPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH  194 (266)
Q Consensus       122 ~~~~q~~~-----~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~  194 (266)
                      .|+.-+-.     . ..++.. -....+.....+.+.++-+.+++.+.++-   .-+.+.+|-|||+||.||.-|++.-+
T Consensus        91 ~YLGgeW~~~~~~agevplq~D~sae~mifgV~g~dp~Rre~LI~iLDIdl---~WRmHkvSDGqrRRVQicMGLL~Pfk  167 (291)
T KOG2355|consen   91 SYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREKLIDILDIDL---RWRMHKVSDGQRRRVQICMGLLKPFK  167 (291)
T ss_pred             eEecccccccccccccccccccccHHHHHhhccCCChhHhhhhhhheeccc---eEEEeeccccchhhhHHHHhccccee
Confidence            33322100     0 000000 01112222222334456666777777742   23567899999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEe
Q 024529          195 IILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATP  251 (266)
Q Consensus       195 lllLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~  251 (266)
                      +|||||-|-.||...+..+++.+++    .+.||+..||-.+-++.+.++++.|+.|+++.
T Consensus       168 VLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~  228 (291)
T KOG2355|consen  168 VLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVD  228 (291)
T ss_pred             EEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeee
Confidence            9999999999999999999999975    36799999999999999999999999999963

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.94  E-value=6e-27  Score=193.46  Aligned_cols=203  Identities=20%  Similarity=0.290  Sum_probs=155.6

Q ss_pred             CcEEEEeeEEEcC---CCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEE-----EcC--------
Q 024529           54 PIISFSDASFGYP---GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF-----RSA--------  117 (266)
Q Consensus        54 ~~l~~~~l~~~y~---~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~-----~~~--------  117 (266)
                      +.+.++|++..+.   |...+++++|++++.||+-|++|.+|||||-..|.|+|..+-. =.|.     ++.        
T Consensus         2 ~LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdn-W~vTADR~Rf~~idLL~L~P   80 (330)
T COG4170           2 PLLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDN-WRVTADRMRFDDIDLLRLSP   80 (330)
T ss_pred             CcccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccc-eEEEhhhcccccchhhcCCh
Confidence            4578888888774   2235889999999999999999999999999999999987632 1121     111        


Q ss_pred             e-------eeEEEEeccccCCCCCCCcHHHHHHHhC------------CCCcHHHHHHHHHhcCCCcc--cccCCCCCCC
Q 024529          118 K-------VRIAVFSQHHVDGLDLSSNPLLYMMRCF------------PGVPEQKLRAHLGSFGVTGN--LALQPMYTLS  176 (266)
Q Consensus       118 ~-------~~i~~~~q~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~l~~~~l~~~--~~~~~~~~LS  176 (266)
                      +       ..++++||++..-++.+...-..+....            ......++.++|.++|+.++  ....++.+|-
T Consensus        81 r~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElT  160 (330)
T COG4170          81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELT  160 (330)
T ss_pred             HHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhc
Confidence            0       2478889988655554433222221111            12346778899999999653  3445789999


Q ss_pred             hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEec
Q 024529          177 GGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPF  252 (266)
Q Consensus       177 gGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~  252 (266)
                      -||-|+|.||.|++.+|++||.|||||.+|+.+..+++..|...    +.||+++|||+..+..+||++-||.-|+-+ .
T Consensus       161 eGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~-E  239 (330)
T COG4170         161 EGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTV-E  239 (330)
T ss_pred             cCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccc-c
Confidence            99999999999999999999999999999999999998888654    357999999999999999999999888764 3


Q ss_pred             CCChhH
Q 024529          253 HGTFHD  258 (266)
Q Consensus       253 ~g~~~~  258 (266)
                      .++.++
T Consensus       240 Sa~~e~  245 (330)
T COG4170         240 SAPSEE  245 (330)
T ss_pred             ccchhH
Confidence            444444

>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]

Probab=99.93  E-value=2.2e-25  Score=204.45  Aligned_cols=184  Identities=24%  Similarity=0.353  Sum_probs=148.1

Q ss_pred             EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCC-C
Q 024529           56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD-L  134 (266)
Q Consensus        56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~-~  134 (266)
                      |.++|+-.--|.+..++..++|.|++|-.+.|+||||||||+|+|+|.|+.+...|.........+.|+||.|.-... +
T Consensus       482 I~lenIpvItP~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gtl  561 (728)
T KOG0064|consen  482 IILENIPVITPAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGTL  561 (728)
T ss_pred             eEEecCceeccCcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCcc
Confidence            888999888887778899999999999999999999999999999999999999999888777889999999852211 1


Q ss_pred             ------CCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCC---------CCCCChHHHHHHHHHHHHccCCCEEEEe
Q 024529          135 ------SSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQP---------MYTLSGGQKSRVAFAKITFKKPHIILLD  199 (266)
Q Consensus       135 ------~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~~LSgGqkqRv~lAral~~~p~lllLD  199 (266)
                            ..+. +.+..  .+..+++...+|..+.++ .+..+.         -..||||||||+++||.+.++|+.-+||
T Consensus       562 RDQIIYPdS~-e~~~~--kg~~d~dL~~iL~~v~L~-~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLD  637 (728)
T KOG0064|consen  562 RDQIIYPDSS-EQMKR--KGYTDQDLEAILDIVHLE-HILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLD  637 (728)
T ss_pred             cceeecCCcH-HHHHh--cCCCHHHHHHHHHHhhHH-HHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhh
Confidence                  1111 22222  245566677777766653 222222         2479999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcCEEEEE
Q 024529          200 EPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVV  244 (266)
Q Consensus       200 EPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l  244 (266)
                      |.||++.++....+.+..+..+.+.|-|||.+.... +-+.++-+
T Consensus       638 EcTsAvsidvE~~i~~~ak~~gi~llsithrpslwk-~h~~ll~~  681 (728)
T KOG0064|consen  638 ECTSAVSIDVEGKIFQAAKDAGISLLSITHRPSLWK-YHTHLLEF  681 (728)
T ss_pred             hhhcccccchHHHHHHHHHhcCceEEEeecCccHHH-HHHHHHhc
Confidence            999999999999999999999999999999998876 44555544

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=99.93  E-value=1.4e-25  Score=188.89  Aligned_cols=140  Identities=19%  Similarity=0.220  Sum_probs=103.9

Q ss_pred             eeeceEEEeCCc-EEEEECCCCchHHHHHHHHh--------CCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHH
Q 024529           72 FKNLNFGIDLDS-RIAMVGPNGIGKSTILKLIA--------GELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYM  142 (266)
Q Consensus        72 l~~vsl~i~~Ge-~~~l~G~nGsGKSTLl~~l~--------Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~  142 (266)
                      +-++||++.+|+ +++|+||||||||||||+|+        |...|....+      .++|+.|.               
T Consensus        17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~------~~~~~~~~---------------   75 (200)
T cd03280          17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS------SLPVFENI---------------   75 (200)
T ss_pred             eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc------cCcCccEE---------------
Confidence            467899999996 79999999999999999998        5544432111      11222221               


Q ss_pred             HHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHH----HHHh
Q 024529          143 MRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALI----QGLV  218 (266)
Q Consensus       143 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~----~~l~  218 (266)
                                     +..++..+ ......+++|+||+|++.+++++ .+|+++|+||||++||+.....+.    +.+.
T Consensus        76 ---------------~~~lg~~~-~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~~l~  138 (200)
T cd03280          76 ---------------FADIGDEQ-SIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAILEELL  138 (200)
T ss_pred             ---------------EEecCchh-hhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHH
Confidence                           11222221 22345689999999999999884 899999999999999999876664    3344


Q ss_pred             hcCCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529          219 LFQGGILMVSHDEHLISGSVEELWVVSEGKAT  250 (266)
Q Consensus       219 ~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~  250 (266)
                      +.+.++|++||+.+ +..+||+++.|++|++.
T Consensus       139 ~~~~~vi~~tH~~~-l~~~~d~~~~l~~g~l~  169 (200)
T cd03280         139 ERGALVIATTHYGE-LKAYAYKREGVENASME  169 (200)
T ss_pred             hcCCEEEEECCHHH-HHHHHhcCCCeEEEEEE
Confidence            45679999999965 55789999999999985

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.92  E-value=7.2e-26  Score=225.81  Aligned_cols=202  Identities=23%  Similarity=0.321  Sum_probs=147.2

Q ss_pred             cEEEEeeEEEcC---CCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC--CCceEEEEcCe--------eeE
Q 024529           55 IISFSDASFGYP---GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ--PSSGTVFRSAK--------VRI  121 (266)
Q Consensus        55 ~l~~~~l~~~y~---~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~~~--------~~i  121 (266)
                      +..-.|+.+.-+   +.+.+|+||+=-++||-.+||+|+|||||||||++|+|-..  ..+|+|.++|.        ..+
T Consensus       787 V~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~  866 (1391)
T KOG0065|consen  787 VFYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVS  866 (1391)
T ss_pred             eEEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhcccc
Confidence            455566655442   34579999999999999999999999999999999999642  23567777774        358


Q ss_pred             EEEeccccCCCCCCCcHHHHHH---HhCCCCc----HHHHHHHHHhcCCCcccccC----CCCCCChHHHHHHHHHHHHc
Q 024529          122 AVFSQHHVDGLDLSSNPLLYMM---RCFPGVP----EQKLRAHLGSFGVTGNLALQ----PMYTLSGGQKSRVAFAKITF  190 (266)
Q Consensus       122 ~~~~q~~~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~~l~~~~l~~~~~~~----~~~~LSgGqkqRv~lAral~  190 (266)
                      ||+.|+......++..+-..+.   +.....+    .+.++++++.++|.+ ..+.    +...||..||+|+.||--|+
T Consensus       867 GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~-~~daiVG~~G~GLs~eQRKrLTIgVELv  945 (1391)
T KOG0065|consen  867 GYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKE-YADALVGLPGSGLSTEQRKRLTIGVELV  945 (1391)
T ss_pred             ceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchh-hhhhhccCCCCCCCHHHhceeeEEEEEe
Confidence            9999986433222222211111   1111221    245788899898863 3333    44559999999999999999


Q ss_pred             cCC-CEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHH-HHhhcCEEEEEeCCeEEecCCChh
Q 024529          191 KKP-HIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHL-ISGSVEELWVVSEGKATPFHGTFH  257 (266)
Q Consensus       191 ~~p-~lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~-~~~~~d~i~~l~~G~i~~~~g~~~  257 (266)
                      .+| .||+|||||||||..+...+++.+++   .|.||+++-|.+.. +-+..|+++.|+.|.-..|.|+..
T Consensus       946 A~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG 1017 (1391)
T KOG0065|consen  946 ANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLG 1017 (1391)
T ss_pred             cCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcc
Confidence            999 89999999999999998888777665   47799999998853 444689999998654334777643

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.91  E-value=2.6e-24  Score=182.91  Aligned_cols=171  Identities=16%  Similarity=0.131  Sum_probs=104.9

Q ss_pred             eeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceE---------EEEcCe--eeEEEEeccccCCCCCCCcHH-
Q 024529           72 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGT---------VFRSAK--VRIAVFSQHHVDGLDLSSNPL-  139 (266)
Q Consensus        72 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~---------i~~~~~--~~i~~~~q~~~~~~~~~~~~~-  139 (266)
                      ++++.+++.+| +.+|+|||||||||||.+|.-..-.....         ....+.  ..+-..+........+. ++. 
T Consensus        14 ~~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~-n~~~   91 (213)
T cd03277          14 YDETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDEGTIEIELYGNPGNIQVD-NLCQ   91 (213)
T ss_pred             cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCCcEEEEEEEEeCCCccccC-CceE
Confidence            45667777665 78999999999999999986654221110         111111  11222222111000100 000 


Q ss_pred             ----HHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHH----ccCCCEEEEeCCCCCCCHHHHH
Q 024529          140 ----LYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT----FKKPHIILLDEPSNHLDLDAVE  211 (266)
Q Consensus       140 ----~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral----~~~p~lllLDEPt~~LD~~~~~  211 (266)
                          ...... .....   .+.+..+.-.....+..+.+||+||||++.+|+++    +.+|+++|+||||++||+.+..
T Consensus        92 ~~~q~~~~~~-~~~~~---~e~l~~~~~~~~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~  167 (213)
T cd03277          92 FLPQDRVGEF-AKLSP---IELLVKFREGEQLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNER  167 (213)
T ss_pred             EEchHHHHHH-HhCCh---HhHheeeecCCCccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHH
Confidence                000000 01111   12233333222334567789999999998877554    5899999999999999999999


Q ss_pred             HHHHHHhhc----C-CEEEEEecCHHHHHhhcC--EEEEEeCCe
Q 024529          212 ALIQGLVLF----Q-GGILMVSHDEHLISGSVE--ELWVVSEGK  248 (266)
Q Consensus       212 ~l~~~l~~~----~-~tiiivtHd~~~~~~~~d--~i~~l~~G~  248 (266)
                      .+++.+.+.    + .++|++||++.....+||  ++++|.+|+
T Consensus       168 ~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~  211 (213)
T cd03277         168 KVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP  211 (213)
T ss_pred             HHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence            888877543    3 379999999887777776  778888886

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.91  E-value=2.7e-24  Score=194.57  Aligned_cols=180  Identities=22%  Similarity=0.281  Sum_probs=122.2

Q ss_pred             eeEEEcCCCCcceeeceE-EEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcC---------------------
Q 024529           60 DASFGYPGGPILFKNLNF-GIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA---------------------  117 (266)
Q Consensus        60 ~l~~~y~~~~~~l~~vsl-~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~---------------------  117 (266)
                      ++..+|+.+..-|  ..| ...+|.++||+|+||-||||-+|+|+|.+.|.=|.-.-..                     
T Consensus        79 e~vHRYg~NgFkL--~~LP~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l  156 (591)
T COG1245          79 EVVHRYGVNGFKL--YRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKL  156 (591)
T ss_pred             cceeeccCCceEE--ecCCCCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHH
Confidence            4667785332222  222 2478999999999999999999999999999877542100                     


Q ss_pred             ---eeeEEEEeccccC-CCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCC
Q 024529          118 ---KVRIAVFSQHHVD-GLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP  193 (266)
Q Consensus       118 ---~~~i~~~~q~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p  193 (266)
                         ..++..-+|.... .-.+..++-+.+...   .......++.+.++|. ...++.+++|||||.||++||.++++++
T Consensus       157 ~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~---de~g~~devve~l~L~-nvl~r~v~~LSGGELQr~aIaa~l~rdA  232 (591)
T COG1245         157 YEGELRAVHKPQYVDLIPKVVKGKVGELLKKV---DERGKFDEVVERLGLE-NVLDRDVSELSGGELQRVAIAAALLRDA  232 (591)
T ss_pred             HcCCcceecchHHHHHHHHHhcchHHHHHHhh---hhcCcHHHHHHHhcch-hhhhhhhhhcCchHHHHHHHHHHHhccC
Confidence               0111111111000 000000000000000   0112456778888996 4678999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHh---hcCCEEEEEecCHHHHHhhcCEEEEEe
Q 024529          194 HIILLDEPSNHLDLDAVEALIQGLV---LFQGGILMVSHDEHLISGSVEELWVVS  245 (266)
Q Consensus       194 ~lllLDEPt~~LD~~~~~~l~~~l~---~~~~tiiivtHd~~~~~~~~d~i~~l~  245 (266)
                      +++++|||||.||...+....+.++   +-+++||+|.||+..+.-++|-|.++-
T Consensus       233 DvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~Y  287 (591)
T COG1245         233 DVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILY  287 (591)
T ss_pred             CEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEe
Confidence            9999999999999987655444444   446799999999999999999988875

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=99.91  E-value=9.7e-24  Score=189.17  Aligned_cols=177  Identities=24%  Similarity=0.322  Sum_probs=138.2

Q ss_pred             cceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCC--------CCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHH
Q 024529           70 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE--------LQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLY  141 (266)
Q Consensus        70 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--------~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~  141 (266)
                      .+++|+||++++|++++|+|+|||||||||++|+|.        ++|++|.|.+....--+.+|......+. ..+.+..
T Consensus       397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~-~~tileh  475 (593)
T COG2401         397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFG-EVTILEH  475 (593)
T ss_pred             eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccC-chhHHHH
Confidence            479999999999999999999999999999999985        5789998876544423334443222222 2344444


Q ss_pred             HHHhCCCCcHHHHHHHHHhcCCCccc-ccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh-
Q 024529          142 MMRCFPGVPEQKLRAHLGSFGVTGNL-ALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL-  219 (266)
Q Consensus       142 ~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~-  219 (266)
                      +....  -+...+.++|...|+.+.. -.++.++||.|||.|+.||++++..|.+++.||--++||+.+...+...+.+ 
T Consensus       476 l~s~t--GD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkisel  553 (593)
T COG2401         476 LRSKT--GDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISEL  553 (593)
T ss_pred             Hhhcc--CchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHH
Confidence            44322  2334567889999997643 3456899999999999999999999999999999999999998888776654 


Q ss_pred             ---cCCEEEEEecCHHHHHhh-cCEEEEEeCCeE
Q 024529          220 ---FQGGILMVSHDEHLISGS-VEELWVVSEGKA  249 (266)
Q Consensus       220 ---~~~tiiivtHd~~~~~~~-~d~i~~l~~G~i  249 (266)
                         .+.|+++|||+.++...+ -|.++.+.-|+.
T Consensus       554 aRe~giTlivvThrpEv~~AL~PD~li~vgYg~v  587 (593)
T COG2401         554 AREAGITLIVVTHRPEVGNALRPDTLILVGYGKV  587 (593)
T ss_pred             HHHhCCeEEEEecCHHHHhccCCceeEEeecccc
Confidence               467999999999999988 688888876665

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=99.89  E-value=2.3e-22  Score=166.33  Aligned_cols=71  Identities=24%  Similarity=0.267  Sum_probs=63.5

Q ss_pred             CChHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeC
Q 024529          175 LSGGQKSRVAFAKITF----KKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSE  246 (266)
Q Consensus       175 LSgGqkqRv~lAral~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~  246 (266)
                      ||+||+||++|||+++    .+|+++++|||+++||+.....+.+.+.+.   +.++|++||+.+.+. .+|+++.+..
T Consensus        95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~-~adrvi~i~~  172 (178)
T cd03239          95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFE-NADKLIGVLF  172 (178)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHh-hCCeEEEEEE
Confidence            9999999999999996    699999999999999999998888877653   468999999998876 7999998864

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=99.89  E-value=5.7e-23  Score=167.54  Aligned_cols=137  Identities=24%  Similarity=0.292  Sum_probs=97.2

Q ss_pred             eeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHH
Q 024529           73 KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQ  152 (266)
Q Consensus        73 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (266)
                      ...++.+.++.++.|+|||||||||+++.+....-..+|.+......+.++         .......        ..   
T Consensus        12 ~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~---------~~~~~~~--------~~---   71 (162)
T cd03227          12 VPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGC---------IVAAVSA--------EL---   71 (162)
T ss_pred             eccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCC---------cceeeEE--------EE---
Confidence            445666666679999999999999999998776555544443211000000         0000000        00   


Q ss_pred             HHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEE
Q 024529          153 KLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK----KPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGIL  225 (266)
Q Consensus       153 ~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tii  225 (266)
                                +      .....||+||+||++||++|..    +|+++|+|||++++|+.....+.+.+.++   +.++|
T Consensus        72 ----------i------~~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vi  135 (162)
T cd03227          72 ----------I------FTRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVI  135 (162)
T ss_pred             ----------e------hheeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEE
Confidence                      0      0112399999999999999986    78999999999999999988877766543   46899


Q ss_pred             EEecCHHHHHhhcCEEEEEeC
Q 024529          226 MVSHDEHLISGSVEELWVVSE  246 (266)
Q Consensus       226 ivtHd~~~~~~~~d~i~~l~~  246 (266)
                      ++||+.++.. .+|+++.|..
T Consensus       136 i~TH~~~~~~-~~d~~~~l~~  155 (162)
T cd03227         136 VITHLPELAE-LADKLIHIKK  155 (162)
T ss_pred             EEcCCHHHHH-hhhhEEEEEE
Confidence            9999999987 5899999864

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=99.87  E-value=4.4e-22  Score=170.25  Aligned_cols=148  Identities=17%  Similarity=0.141  Sum_probs=109.3

Q ss_pred             CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEE-EEeccccCCCCCCCcHHHHHHHhC
Q 024529           68 GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIA-VFSQHHVDGLDLSSNPLLYMMRCF  146 (266)
Q Consensus        68 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~-~~~q~~~~~~~~~~~~~~~~~~~~  146 (266)
                      ...+.+|+++++.++++++|+||||+|||||+++++-.        .+  -..+| |+|....                 
T Consensus        16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~--------~~--la~~g~~vpa~~~-----------------   68 (222)
T cd03285          16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI--------VL--MAQIGCFVPCDSA-----------------   68 (222)
T ss_pred             CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH--------HH--HHHhCCCcCcccE-----------------
Confidence            34678999999999999999999999999999999721        00  00011 1111100                 


Q ss_pred             CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHH--ccCCCEEEEeCC---CCCCCHHHHHHHH-HHHhh-
Q 024529          147 PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT--FKKPHIILLDEP---SNHLDLDAVEALI-QGLVL-  219 (266)
Q Consensus       147 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral--~~~p~lllLDEP---t~~LD~~~~~~l~-~~l~~-  219 (266)
                         .-..+.+++..+++.+.    ....+|.|+++++.+++++  +.+|+++|||||   |+++|+.+..+.. +.+.+ 
T Consensus        69 ---~~~~~~~il~~~~l~d~----~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~  141 (222)
T cd03285          69 ---DIPIVDCILARVGASDS----QLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQ  141 (222)
T ss_pred             ---EEeccceeEeeeccccc----hhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhc
Confidence               00012334566776533    2578999999999999999  899999999999   9999998876543 66654 


Q ss_pred             cCCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529          220 FQGGILMVSHDEHLISGSVEELWVVSEGKAT  250 (266)
Q Consensus       220 ~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~  250 (266)
                      .+.++|++||+ ..+.++||++..+++|++.
T Consensus       142 ~~~~vlisTH~-~el~~~~~~~~~i~~g~~~  171 (222)
T cd03285         142 IKCFCLFATHF-HELTALADEVPNVKNLHVT  171 (222)
T ss_pred             CCCeEEEEech-HHHHHHhhcCCCeEEEEEE
Confidence            46789999996 5567799999999988874

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=99.87  E-value=1.6e-21  Score=172.19  Aligned_cols=74  Identities=18%  Similarity=0.252  Sum_probs=65.2

Q ss_pred             CCCChHHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeC
Q 024529          173 YTLSGGQKSRVAFAKITFK----KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSE  246 (266)
Q Consensus       173 ~~LSgGqkqRv~lAral~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~  246 (266)
                      ..|||||+||++||++++.    +|+++||||||++||+.....+.+.+.+.  +.++|++||+++.. .+||++++|.+
T Consensus       169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~-~~~d~~~~l~~  247 (276)
T cd03241         169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVA-AMADNHFLVEK  247 (276)
T ss_pred             hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHH-HhcCcEEEEEE
Confidence            3599999999999987653    99999999999999999999998888765  45899999999965 58999999987


Q ss_pred             C
Q 024529          247 G  247 (266)
Q Consensus       247 G  247 (266)
                      |
T Consensus       248 ~  248 (276)
T cd03241         248 E  248 (276)
T ss_pred             e
Confidence            5

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.87  E-value=7.1e-21  Score=198.11  Aligned_cols=106  Identities=26%  Similarity=0.301  Sum_probs=91.9

Q ss_pred             HHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccC---CCEEEEeCCCCCCCHHHHHHHHHHH---hhcCCEEEEE
Q 024529          154 LRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK---PHIILLDEPSNHLDLDAVEALIQGL---VLFQGGILMV  227 (266)
Q Consensus       154 ~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~---p~lllLDEPt~~LD~~~~~~l~~~l---~~~~~tiiiv  227 (266)
                      ..+.|..+||..-...++..+|||||.||+-||.-|..+   +.+++|||||.||++.....+++.|   .+.+.|||+|
T Consensus      1679 ~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivi 1758 (1809)
T PRK00635       1679 PLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYI 1758 (1809)
T ss_pred             HHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEE
Confidence            345677889976667889999999999999999999865   7899999999999999999888775   4568899999


Q ss_pred             ecCHHHHHhhcCEEEEEe------CCeEEecCCChhHHHH
Q 024529          228 SHDEHLISGSVEELWVVS------EGKATPFHGTFHDYKK  261 (266)
Q Consensus       228 tHd~~~~~~~~d~i~~l~------~G~i~~~~g~~~~~~~  261 (266)
                      .||++.+.. ||.|+-|-      .|+|+ +.|+++++.+
T Consensus      1759 eH~~~~i~~-aD~iidlgp~gG~~GG~iv-a~Gtp~~i~~ 1796 (1809)
T PRK00635       1759 DHDPALLKQ-ADYLIEMGPGSGKTGGKIL-FSGPPKDISA 1796 (1809)
T ss_pred             eCCHHHHHh-CCEEEEcCCCcccCCCEEE-EEeCHHHHhh
Confidence            999999986 99999994      46776 8999999865

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=99.86  E-value=3.7e-22  Score=168.32  Aligned_cols=145  Identities=17%  Similarity=0.123  Sum_probs=96.9

Q ss_pred             eeceEEEeCCcEEEEECCCCchHHHHHHHHhCC-CCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcH
Q 024529           73 KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE-LQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPE  151 (266)
Q Consensus        73 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~  151 (266)
                      -..++++.+|++++|+|||||||||||++|++. +.+..|.........++++.|                         
T Consensus        20 ~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dq-------------------------   74 (202)
T cd03243          20 VPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDR-------------------------   74 (202)
T ss_pred             EeeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCE-------------------------
Confidence            455777779999999999999999999999953 223333222111111111111                         


Q ss_pred             HHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH----HHHHhhcCCEEEEE
Q 024529          152 QKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL----IQGLVLFQGGILMV  227 (266)
Q Consensus       152 ~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l----~~~l~~~~~tiiiv  227 (266)
                           .+..++..+. .....+.+|++++| +..+.+++.+|+++|+||||+|+|+.....+    ++.+.+.+.++|++
T Consensus        75 -----i~~~~~~~d~-i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~  147 (202)
T cd03243          75 -----IFTRIGAEDS-ISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFA  147 (202)
T ss_pred             -----EEEEecCccc-ccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence                 1111222211 12344677777765 6666788899999999999999999876554    34444557799999


Q ss_pred             ecCHHHHHhhcCEEEEEeCCeEE
Q 024529          228 SHDEHLISGSVEELWVVSEGKAT  250 (266)
Q Consensus       228 tHd~~~~~~~~d~i~~l~~G~i~  250 (266)
                      ||+.+++. .|+++..++.+++.
T Consensus       148 tH~~~~~~-~~~~~~~l~~~~~~  169 (202)
T cd03243         148 THFHELAD-LPEQVPGVKNLHME  169 (202)
T ss_pred             CChHHHHH-HhhcCCCeEEEEEE
Confidence            99998877 57788788777764

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.86  E-value=1.7e-20  Score=179.74  Aligned_cols=105  Identities=27%  Similarity=0.362  Sum_probs=89.2

Q ss_pred             HHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEe
Q 024529          155 RAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP---HIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVS  228 (266)
Q Consensus       155 ~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p---~lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivt  228 (266)
                      .+.|..+||..-...++..+|||||.|||-||.-|....   .++||||||.||-...+..+++.|.+   .+.|||+|.
T Consensus       803 LqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIE  882 (935)
T COG0178         803 LQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIE  882 (935)
T ss_pred             HHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence            344556788765677899999999999999999998876   99999999999999998888777654   477999999


Q ss_pred             cCHHHHHhhcCEEEEEe------CCeEEecCCChhHHHH
Q 024529          229 HDEHLISGSVEELWVVS------EGKATPFHGTFHDYKK  261 (266)
Q Consensus       229 Hd~~~~~~~~d~i~~l~------~G~i~~~~g~~~~~~~  261 (266)
                      |+++.+. .||.|+-|-      .|+|+ +.|+++++.+
T Consensus       883 HNLdVIk-~AD~IIDLGPeGG~~GG~iv-a~GTPeeva~  919 (935)
T COG0178         883 HNLDVIK-TADWIIDLGPEGGDGGGEIV-ASGTPEEVAK  919 (935)
T ss_pred             cccceEe-ecCEEEEcCCCCCCCCceEE-EecCHHHHHh
Confidence            9999987 699999883      46675 7899999875

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=99.84  E-value=1.1e-20  Score=170.16  Aligned_cols=179  Identities=22%  Similarity=0.290  Sum_probs=135.2

Q ss_pred             EEcCCCCcceeeceEEEeCCc-----EEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCc
Q 024529           63 FGYPGGPILFKNLNFGIDLDS-----RIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSN  137 (266)
Q Consensus        63 ~~y~~~~~~l~~vsl~i~~Ge-----~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~  137 (266)
                      ++|++-+..+.+..|.|..|+     ++..+|.||.|||||+++++|.++|++|.=.  ....++|-||.......  .+
T Consensus       343 y~Yp~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~--p~lnVSykpqkispK~~--~t  418 (592)
T KOG0063|consen  343 YSYPKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEI--PVLNVSYKPQKISPKRE--GT  418 (592)
T ss_pred             eccCcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcc--cccceeccccccCcccc--ch
Confidence            557665667789999999885     6899999999999999999999999886311  23467888887543222  22


Q ss_pred             HHHHHHHh--CCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHH-
Q 024529          138 PLLYMMRC--FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALI-  214 (266)
Q Consensus       138 ~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~-  214 (266)
                      +...+...  ......+-+.++++-+.+. +..++.+.+|||||.||+++|.+|=..+++++.|||.+.||.+.+...- 
T Consensus       419 vR~ll~~kIr~ay~~pqF~~dvmkpL~ie-~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~Ask  497 (592)
T KOG0063|consen  419 VRQLLHTKIRDAYMHPQFVNDVMKPLQIE-NIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASK  497 (592)
T ss_pred             HHHHHHHHhHhhhcCHHHHHhhhhhhhHH-HHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHH
Confidence            22211111  1123345567778877775 5677889999999999999999999999999999999999998765433 


Q ss_pred             ---HHHhhcCCEEEEEecCHHHHHhhcCEEEEEeC
Q 024529          215 ---QGLVLFQGGILMVSHDEHLISGSVEELWVVSE  246 (266)
Q Consensus       215 ---~~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~  246 (266)
                         +.+...+.|-.+|.||.-.+.-.+||+++.+.
T Consensus       498 vikRfilhakktafvVEhdfImaTYladrvivf~G  532 (592)
T KOG0063|consen  498 VIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEG  532 (592)
T ss_pred             HHHHHHHhccchhhhhhhHHHHHHhhcceeEEEec
Confidence               33344467889999999888888999999864

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=99.83  E-value=3e-20  Score=156.87  Aligned_cols=140  Identities=15%  Similarity=0.113  Sum_probs=99.5

Q ss_pred             CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEE-EeccccCCCCCCCcHHHHHHHhC
Q 024529           68 GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAV-FSQHHVDGLDLSSNPLLYMMRCF  146 (266)
Q Consensus        68 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~-~~q~~~~~~~~~~~~~~~~~~~~  146 (266)
                      ...+.+|++|+++.|++++|+||||+|||||+++++++.--          ..+|+ +|-.     .....         
T Consensus        15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l----------a~~G~~vpa~-----~~~l~---------   70 (204)
T cd03282          15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIM----------AQIGCFVPAE-----YATLP---------   70 (204)
T ss_pred             CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHH----------HHcCCCcchh-----hcCcc---------
Confidence            34688999999999999999999999999999999886310          00111 0100     00000         


Q ss_pred             CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH----HHHHHHHhhcCC
Q 024529          147 PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAV----EALIQGLVLFQG  222 (266)
Q Consensus       147 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~----~~l~~~l~~~~~  222 (266)
                            ....++..++..+. ..+..+++|+|++|+ ..+.+++.+|+++|||||++|+|+...    ..+++.+.+.+.
T Consensus        71 ------~~d~I~~~~~~~d~-~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~  142 (204)
T cd03282          71 ------IFNRLLSRLSNDDS-MERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKES  142 (204)
T ss_pred             ------ChhheeEecCCccc-cchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCC
Confidence                  11223445555433 346778999999975 455668899999999999999999653    345666666678


Q ss_pred             EEEEEecCHHHHHhhcC
Q 024529          223 GILMVSHDEHLISGSVE  239 (266)
Q Consensus       223 tiiivtHd~~~~~~~~d  239 (266)
                      ++|++||+.+++...++
T Consensus       143 ~~i~~TH~~~l~~~~~~  159 (204)
T cd03282         143 TVFFATHFRDIAAILGN  159 (204)
T ss_pred             EEEEECChHHHHHHhhc
Confidence            99999999999987653

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=99.82  E-value=2.7e-20  Score=156.65  Aligned_cols=134  Identities=17%  Similarity=0.087  Sum_probs=77.5

Q ss_pred             CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC-CceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCC
Q 024529           69 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-SSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP  147 (266)
Q Consensus        69 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~  147 (266)
                      +.+++|++|+.  |++++|+||||||||||+|+|+|.... ..|.-. ..   ..+.+|..  .+....+..+.+.....
T Consensus        14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v-~a---~~~~~q~~--~l~~~~~~~d~l~~~~s   85 (199)
T cd03283          14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVILAQAGAPV-CA---SSFELPPV--KIFTSIRVSDDLRDGIS   85 (199)
T ss_pred             CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEE-ec---CccCcccc--eEEEeccchhccccccC
Confidence            34677776665  799999999999999999999985421 122110 00   01222210  01001111111100000


Q ss_pred             --CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH----HHHHhhcC
Q 024529          148 --GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL----IQGLVLFQ  221 (266)
Q Consensus       148 --~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l----~~~l~~~~  221 (266)
                        .....++.++++.++.                           .+|+++|+||||+++|+.....+    ++.+.+.+
T Consensus        86 ~~~~e~~~~~~iL~~~~~---------------------------~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~  138 (199)
T cd03283          86 YFYAELRRLKEIVEKAKK---------------------------GEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKN  138 (199)
T ss_pred             hHHHHHHHHHHHHHhccC---------------------------CCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCC
Confidence              0001223333333321                           59999999999999999876544    34444556


Q ss_pred             CEEEEEecCHHHHHhh
Q 024529          222 GGILMVSHDEHLISGS  237 (266)
Q Consensus       222 ~tiiivtHd~~~~~~~  237 (266)
                      .++|++||+++++...
T Consensus       139 ~tiiivTH~~~~~~~~  154 (199)
T cd03283         139 TIGIISTHDLELADLL  154 (199)
T ss_pred             CEEEEEcCcHHHHHhh
Confidence            7999999999998765

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.81  E-value=1.2e-19  Score=181.70  Aligned_cols=195  Identities=23%  Similarity=0.336  Sum_probs=146.8

Q ss_pred             CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC---CceEEEEcCe--------eeEEEEeccccCCCCCCC-
Q 024529           69 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP---SSGTVFRSAK--------VRIAVFSQHHVDGLDLSS-  136 (266)
Q Consensus        69 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~~~--------~~i~~~~q~~~~~~~~~~-  136 (266)
                      ..+++|+|.-+++|+++.++||.||||||||++++|-..-   ..|+|.++|.        ..++|.+|+......++. 
T Consensus       128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr  207 (1391)
T KOG0065|consen  128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR  207 (1391)
T ss_pred             ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence            3689999999999999999999999999999999997643   2468887764        357888887543222222 


Q ss_pred             cHHHHHHHh------CCCCcHHH-----HHHHHHhcCCCcccc----cCCCCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 024529          137 NPLLYMMRC------FPGVPEQK-----LRAHLGSFGVTGNLA----LQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP  201 (266)
Q Consensus       137 ~~~~~~~~~------~~~~~~~~-----~~~~l~~~~l~~~~~----~~~~~~LSgGqkqRv~lAral~~~p~lllLDEP  201 (266)
                      ..+++..+.      +++.++.+     ...+++.+|++....    +.-++..|||||+||.+|-+++.+++++.+||+
T Consensus       208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~  287 (1391)
T KOG0065|consen  208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEI  287 (1391)
T ss_pred             ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecc
Confidence            123333322      11222222     346788999974322    233567999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHhhc----CCEEEEEecCH-HHHHhhcCEEEEEeCCeEEecCCChhHHHHHHh
Q 024529          202 SNHLDLDAVEALIQGLVLF----QGGILMVSHDE-HLISGSVEELWVVSEGKATPFHGTFHDYKKMLQ  264 (266)
Q Consensus       202 t~~LD~~~~~~l~~~l~~~----~~tiiivtHd~-~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~  264 (266)
                      |.|||..+.-++++.+++.    +.|++++-|.. ..+-...|.|++|.+|+++ |.|+.++.....+
T Consensus       288 t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~i-y~Gp~d~~~~yFe  354 (1391)
T KOG0065|consen  288 TRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQI-YQGPRDEVLPYFE  354 (1391)
T ss_pred             cccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceE-EeccHHHHHHHHH
Confidence            9999999999999888764    45666666654 4466678999999999997 8999988776654

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.81  E-value=2.2e-19  Score=179.76  Aligned_cols=102  Identities=25%  Similarity=0.298  Sum_probs=89.6

Q ss_pred             HHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCH
Q 024529          157 HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP--HIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDE  231 (266)
Q Consensus       157 ~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p--~lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~  231 (266)
                      .|+.+||.....++++.+|||||+|||+||++|+.+|  ++|||||||+|||+.....+++.|++   .+.|||+||||+
T Consensus       472 ~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~  551 (943)
T PRK00349        472 FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDE  551 (943)
T ss_pred             HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            5778888643368899999999999999999999997  99999999999999999988887654   467999999999


Q ss_pred             HHHHhhcCEEEEE------eCCeEEecCCChhHHH
Q 024529          232 HLISGSVEELWVV------SEGKATPFHGTFHDYK  260 (266)
Q Consensus       232 ~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~  260 (266)
                      +++. .||+|++|      ++|+++ +.|+++++.
T Consensus       552 ~~i~-~aD~vi~LgpgaG~~~G~iv-~~g~~~e~~  584 (943)
T PRK00349        552 DTIR-AADYIVDIGPGAGVHGGEVV-ASGTPEEIM  584 (943)
T ss_pred             HHHH-hCCEEEEeccccCCCCCEEe-eccCHHHHh
Confidence            9987 69999999      889986 789988874

>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage

Probab=99.80  E-value=6.7e-19  Score=154.94  Aligned_cols=77  Identities=21%  Similarity=0.183  Sum_probs=67.5

Q ss_pred             CCCCChHHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhc---C
Q 024529          172 MYTLSGGQKSRVAFAKITF---------KKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSV---E  239 (266)
Q Consensus       172 ~~~LSgGqkqRv~lAral~---------~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~---d  239 (266)
                      ...+|+||+|+++||++|+         .+|+++||||||++||+..+..+.+.+.+.+ .+++++|+.+.+..+|   +
T Consensus       181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~-q~ii~~~~~~~~~~~~~~~~  259 (270)
T cd03242         181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV-QTFVTTTDLADFDALWLRRA  259 (270)
T ss_pred             HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC-CEEEEeCCchhccchhccCc
Confidence            4568999999999999985         7999999999999999999999999998776 5677777777777787   7


Q ss_pred             EEEEEeCCeE
Q 024529          240 ELWVVSEGKA  249 (266)
Q Consensus       240 ~i~~l~~G~i  249 (266)
                      +++.+++|++
T Consensus       260 ~i~~l~~g~i  269 (270)
T cd03242         260 QIFRVDAGTL  269 (270)
T ss_pred             cEEEEeCcEE
Confidence            8999999986

When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.80  E-value=2.9e-19  Score=178.59  Aligned_cols=102  Identities=26%  Similarity=0.291  Sum_probs=88.4

Q ss_pred             HHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCH
Q 024529          157 HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP--HIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDE  231 (266)
Q Consensus       157 ~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p--~lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~  231 (266)
                      .+..+|+.....++++.+|||||+|||.||++|+.+|  .+|||||||+|||+.....+++.|++   .+.|||+|+||+
T Consensus       470 ~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~  549 (924)
T TIGR00630       470 FLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDE  549 (924)
T ss_pred             hHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence            4667788643257899999999999999999999986  89999999999999999988887754   367999999999


Q ss_pred             HHHHhhcCEEEEE------eCCeEEecCCChhHHH
Q 024529          232 HLISGSVEELWVV------SEGKATPFHGTFHDYK  260 (266)
Q Consensus       232 ~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~  260 (266)
                      +++. .||++++|      ++|+++ +.|+++++.
T Consensus       550 ~~i~-~aD~vi~LgpgaG~~~G~Iv-~~g~~~el~  582 (924)
T TIGR00630       550 ETIR-AADYVIDIGPGAGIHGGEVV-ASGTPEEIL  582 (924)
T ss_pred             HHHh-hCCEEEEecccccCCCCEEe-eccCHHHHh
Confidence            9987 89999999      899986 788888763

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=99.79  E-value=2e-19  Score=153.23  Aligned_cols=141  Identities=23%  Similarity=0.268  Sum_probs=91.8

Q ss_pred             CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC-CCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCC
Q 024529           69 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-PSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP  147 (266)
Q Consensus        69 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~  147 (266)
                      ..+.+|++|+..+ ++++|+||||||||||||++++..- ...|.........++++.+-                    
T Consensus        18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~~i--------------------   76 (216)
T cd03284          18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDRI--------------------   76 (216)
T ss_pred             ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhccCCeeccccceecceeeE--------------------
Confidence            3578999999887 9999999999999999999987431 11222111111122222110                    


Q ss_pred             CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHH----HHHHHHHH--ccCCCEEEEeCC---CCCCCHHHH-HHHHHHH
Q 024529          148 GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKS----RVAFAKIT--FKKPHIILLDEP---SNHLDLDAV-EALIQGL  217 (266)
Q Consensus       148 ~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkq----Rv~lAral--~~~p~lllLDEP---t~~LD~~~~-~~l~~~l  217 (266)
                                ...++.        ..++|.|+.+    +..+++++  +.+|+++|||||   |+++|.... ..+++.+
T Consensus        77 ----------~~~~~~--------~~~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l  138 (216)
T cd03284          77 ----------FTRIGA--------SDDLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYL  138 (216)
T ss_pred             ----------eccCCc--------hhhhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHH
Confidence                      001111        1234444443    33455555  579999999999   999998764 5677888


Q ss_pred             hhc-CCEEEEEecCHHHHHhhcCEEEEEeCCeE
Q 024529          218 VLF-QGGILMVSHDEHLISGSVEELWVVSEGKA  249 (266)
Q Consensus       218 ~~~-~~tiiivtHd~~~~~~~~d~i~~l~~G~i  249 (266)
                      .+. +.++|++||+.++. .++|++..+.+|++
T Consensus       139 ~~~~~~~vi~~TH~~~l~-~l~~~~~~v~~~~~  170 (216)
T cd03284         139 HEKIGAKTLFATHYHELT-ELEGKLPRVKNFHV  170 (216)
T ss_pred             HhccCCcEEEEeCcHHHH-HHhhcCCCeEEEEE
Confidence            776 78999999997654 47887666666655

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=99.76  E-value=7.1e-19  Score=146.41  Aligned_cols=124  Identities=21%  Similarity=0.256  Sum_probs=79.5

Q ss_pred             EEEEECCCCchHHHHHHHHh-CCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcC
Q 024529           84 RIAMVGPNGIGKSTILKLIA-GELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFG  162 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~-Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  162 (266)
                      +++|+||||+|||||+|.++ ..+.+..|.........++++                              .+++..++
T Consensus         1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~------------------------------d~il~~~~   50 (185)
T smart00534        1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVF------------------------------DRIFTRIG   50 (185)
T ss_pred             CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEeccc------------------------------ceEEEEeC
Confidence            36899999999999999998 333334443221111111111                              11233444


Q ss_pred             CCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH----HHHHhh-cCCEEEEEecCHHHHHhh
Q 024529          163 VTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL----IQGLVL-FQGGILMVSHDEHLISGS  237 (266)
Q Consensus       163 l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l----~~~l~~-~~~tiiivtHd~~~~~~~  237 (266)
                      ..+. ..+..+++|+|++|...++. .+.+|+++|+|||++|+|+.....+    ++.+.+ .+.++|++||+.+. .++
T Consensus        51 ~~d~-~~~~~s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l-~~~  127 (185)
T smart00534       51 ASDS-LAQGLSTFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHEL-TKL  127 (185)
T ss_pred             CCCc-hhccccHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHH-HHH
Confidence            4433 34567899998887433333 2459999999999999999865554    344444 36789999999975 457


Q ss_pred             cCE
Q 024529          238 VEE  240 (266)
Q Consensus       238 ~d~  240 (266)
                      |++
T Consensus       128 ~~~  130 (185)
T smart00534      128 ADE  130 (185)
T ss_pred             hhc
Confidence            764

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=99.75  E-value=1.8e-17  Score=140.91  Aligned_cols=128  Identities=21%  Similarity=0.195  Sum_probs=89.6

Q ss_pred             eEEEeCC--cEEEEECCCCchHHHHHHHHhC--CCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcH
Q 024529           76 NFGIDLD--SRIAMVGPNGIGKSTILKLIAG--ELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPE  151 (266)
Q Consensus        76 sl~i~~G--e~~~l~G~nGsGKSTLl~~l~G--l~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~  151 (266)
                      ++.+..+  .+++|+||||+|||||||.|+.  .+ +..|.........++|+.|... .+....+.             
T Consensus        21 d~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~~~~~~~~d~i~~-~l~~~~si-------------   85 (213)
T cd03281          21 DTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPADSATIGLVDKIFT-RMSSRESV-------------   85 (213)
T ss_pred             eEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcCCcEEeeeeeeee-eeCCccCh-------------
Confidence            4444444  7899999999999999999984  33 5677776666667777776531 11111100             


Q ss_pred             HHHHHHHHhcCCCcccccCCCCCCC--hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH----HHHHHHhhcC---C
Q 024529          152 QKLRAHLGSFGVTGNLALQPMYTLS--GGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVE----ALIQGLVLFQ---G  222 (266)
Q Consensus       152 ~~~~~~l~~~~l~~~~~~~~~~~LS--gGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~----~l~~~l~~~~---~  222 (266)
                                          ...+|  .-+.||++++++++.+|.++|||||++|+|+....    .+++.+.+.+   .
T Consensus        86 --------------------~~~~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~  145 (213)
T cd03281          86 --------------------SSGQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECP  145 (213)
T ss_pred             --------------------hhccchHHHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCc
Confidence                                01112  35779999999999999999999999999986432    3444454432   3


Q ss_pred             EEEEEecCHHHHHhhc
Q 024529          223 GILMVSHDEHLISGSV  238 (266)
Q Consensus       223 tiiivtHd~~~~~~~~  238 (266)
                      ++|++||+.+++....
T Consensus       146 ~vli~TH~~~l~~~~~  161 (213)
T cd03281         146 RVIVSTHFHELFNRSL  161 (213)
T ss_pred             EEEEEcChHHHHHhhh
Confidence            7999999999987653

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR01069 mutS2 MutS2 family protein

Probab=99.72  E-value=1.9e-17  Score=163.73  Aligned_cols=148  Identities=24%  Similarity=0.310  Sum_probs=98.1

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCC-cEEEEECCCCchHHHHHHHHhCC-CCCCceE-EEEcCeeeEEEEeccccCC
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLD-SRIAMVGPNGIGKSTILKLIAGE-LQPSSGT-VFRSAKVRIAVFSQHHVDG  131 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl-~~p~~G~-i~~~~~~~i~~~~q~~~~~  131 (266)
                      .+.++++..-+-... -+-.+|+++..+ ++++|+||||+|||||||+|+|. +.+..|. |.......++|+.|.    
T Consensus       295 ~i~l~~~rhPll~~~-~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~~~~d~i----  369 (771)
T TIGR01069       295 KIILENARHPLLKEP-KVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFEEI----  369 (771)
T ss_pred             CEEEccccCceecCC-ceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccccccchhhe----
Confidence            577777654221111 123479999887 89999999999999999999997 4555552 111100111111110    


Q ss_pred             CCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH
Q 024529          132 LDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVE  211 (266)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~  211 (266)
                                    +            ..++.... .....+++|+|+++++.+++++ .+|+++|||||++|+|+....
T Consensus       370 --------------~------------~~i~~~~s-i~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~  421 (771)
T TIGR01069       370 --------------F------------ADIGDEQS-IEQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGS  421 (771)
T ss_pred             --------------e------------eecChHhH-HhhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHH
Confidence                          0            01111111 1234678999999999998876 789999999999999998766


Q ss_pred             HH----HHHHhhcCCEEEEEecCHHHHH
Q 024529          212 AL----IQGLVLFQGGILMVSHDEHLIS  235 (266)
Q Consensus       212 ~l----~~~l~~~~~tiiivtHd~~~~~  235 (266)
                      .+    ++.+.+.+.++|++||+.++..
T Consensus       422 ala~aiLe~l~~~g~~viitTH~~eL~~  449 (771)
T TIGR01069       422 ALAISILEYLLKQNAQVLITTHYKELKA  449 (771)
T ss_pred             HHHHHHHHHHHhcCCEEEEECChHHHHH
Confidence            55    4445555778999999988754

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []

Probab=99.71  E-value=6.6e-17  Score=137.81  Aligned_cols=164  Identities=24%  Similarity=0.303  Sum_probs=96.8

Q ss_pred             eeceEEEeCCcEEEEECCCCchHHHHHHHHh-CCC--CCCc-------eEEEE-c-----CeeeEEEEeccccCCCCCCC
Q 024529           73 KNLNFGIDLDSRIAMVGPNGIGKSTILKLIA-GEL--QPSS-------GTVFR-S-----AKVRIAVFSQHHVDGLDLSS  136 (266)
Q Consensus        73 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~-Gl~--~p~~-------G~i~~-~-----~~~~i~~~~q~~~~~~~~~~  136 (266)
                      +...+.+.+ .+++|+|||||||||++.+|. .+-  ...+       .-|.. .     ....+...++..........
T Consensus        16 ~~~~~~~~~-~~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r~~~~~~lI~~~~~~~~~~~a~V~~~~~~~~~~~~~~~   94 (220)
T PF02463_consen   16 KNAELSFSP-GLNVIVGPNGSGKSNILEAIEFVLGGRPSKSFRGSKLKDLINKSGSDQDSKSAEVELIFDNSDEEFELDK   94 (220)
T ss_dssp             CEEEEETTS-SEEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT-SSGGTCB--BTTB---SEEEEEEEEECTTEESSSSS
T ss_pred             CeEEEecCC-CCEEEEcCCCCCHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccc
Confidence            455666654 599999999999999999993 222  1111       11111 0     01223333222111100000


Q ss_pred             cHH------HH-----HHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHc----cCCCEEEEeCC
Q 024529          137 NPL------LY-----MMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF----KKPHIILLDEP  201 (266)
Q Consensus       137 ~~~------~~-----~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~----~~p~lllLDEP  201 (266)
                      ...      ..     ............+.+.+....+...       .||||||.+++||-.|+    .+.+++|||||
T Consensus        95 ~~~~i~r~~~~~~~~~~~in~~~~~~~~~~~~l~~~~i~~~-------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEv  167 (220)
T PF02463_consen   95 KEIEISRRIDRKGRSEYKINGKKVRLKDLEELLPEVGISPE-------FLSGGEKSLVALALLLALQRYKPSPFLILDEV  167 (220)
T ss_dssp             SEEEEEEEEETTS-EEEEETTEEE-HHHHHHHHHCTTTTTT-------GS-HHHHHHHHHHHHHHHHTCS--SEEEEEST
T ss_pred             ccccccccccccccccccccccccccccccccccccccccc-------cccccccccccccccccccccccccccccccc
Confidence            000      00     0000001234566677777666432       89999999999997663    57899999999


Q ss_pred             CCCCCHHHHHHHHHHHhhcC--CEEEEEecCHHHHHhhcCEEEEEe
Q 024529          202 SNHLDLDAVEALIQGLVLFQ--GGILMVSHDEHLISGSVEELWVVS  245 (266)
Q Consensus       202 t~~LD~~~~~~l~~~l~~~~--~tiiivtHd~~~~~~~~d~i~~l~  245 (266)
                      .++||...+..+.+.|.+..  .-+|++||+..+.. .||+.+.+.
T Consensus       168 d~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~-~a~~~~~v~  212 (220)
T PF02463_consen  168 DAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFE-DADKLIGVT  212 (220)
T ss_dssp             TTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHT-T-SEEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence            99999999999999998875  57999999998877 578887653

The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....

>PRK00064 recF recombination protein F; Reviewed

Probab=99.70  E-value=7.5e-16  Score=140.85  Aligned_cols=78  Identities=22%  Similarity=0.259  Sum_probs=69.3

Q ss_pred             CCCCChHHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhc--CE
Q 024529          172 MYTLSGGQKSRVAFAKITF---------KKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSV--EE  240 (266)
Q Consensus       172 ~~~LSgGqkqRv~lAral~---------~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~--d~  240 (266)
                      ...+|.||+++++||++|+         .+|+|||||||+++||+..+..+.+.+.+.+..++++||+.+.+...+  ++
T Consensus       271 ~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~~~qv~it~~~~~~~~~~~~~~~  350 (361)
T PRK00064        271 ADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGLGAQVFITTTDLEDLADLLENAK  350 (361)
T ss_pred             HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhccCCEEEEEcCChhhhhhhhccCc
Confidence            3579999999999999986         799999999999999999999999999876668999999988877664  57


Q ss_pred             EEEEeCCeE
Q 024529          241 LWVVSEGKA  249 (266)
Q Consensus       241 i~~l~~G~i  249 (266)
                      ++.+++|++
T Consensus       351 i~~v~~G~i  359 (361)
T PRK00064        351 IFHVEQGKI  359 (361)
T ss_pred             EEEEeCCEE
Confidence            999999986

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=99.69  E-value=6.8e-16  Score=135.33  Aligned_cols=143  Identities=24%  Similarity=0.340  Sum_probs=86.9

Q ss_pred             cEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcC
Q 024529           83 SRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFG  162 (266)
Q Consensus        83 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  162 (266)
                      .-++|+||||||||||+++|+|++.|++|+|.++++. +..+          .  ....+........+..+       +
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~-v~~~----------d--~~~ei~~~~~~~~q~~~-------~  171 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKK-VGIV----------D--ERSEIAGCVNGVPQHDV-------G  171 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEE-eecc----------h--hHHHHHHHhcccccccc-------c
Confidence            5689999999999999999999999999999877642 1100          0  00011111111111100       0


Q ss_pred             CCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHH--H------
Q 024529          163 VTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHL--I------  234 (266)
Q Consensus       163 l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~--~------  234 (266)
                             ....-|.+=.|.......+.+.+|+++|+|||++.   +....+++.+. .+.++|++||+.+.  +      
T Consensus       172 -------~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~---e~~~~l~~~~~-~G~~vI~ttH~~~~~~~~~r~~~  240 (270)
T TIGR02858       172 -------IRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGRE---EDVEALLEALH-AGVSIIATAHGRDVEDLYKRPVF  240 (270)
T ss_pred             -------ccccccccchHHHHHHHHHHhCCCCEEEEeCCCcH---HHHHHHHHHHh-CCCEEEEEechhHHHHHHhChHH
Confidence                   01111222222222333444479999999999853   33455555554 47799999998766  4      


Q ss_pred             -----HhhcCEEEEEeCCeEEecCCChhHH
Q 024529          235 -----SGSVEELWVVSEGKATPFHGTFHDY  259 (266)
Q Consensus       235 -----~~~~d~i~~l~~G~i~~~~g~~~~~  259 (266)
                           ..+++|+++|++|+   ..|+++++
T Consensus       241 ~~l~~~~~~~r~i~L~~~~---~~g~~~~i  267 (270)
T TIGR02858       241 KELIENEAFERYVVLSRRK---GPGTVEAV  267 (270)
T ss_pred             HHHHhcCceEEEEEEecCC---CCCceeec
Confidence                 25689999999875   35655443

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=99.67  E-value=4.5e-16  Score=132.94  Aligned_cols=133  Identities=17%  Similarity=0.215  Sum_probs=91.2

Q ss_pred             CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhC-CCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCC
Q 024529           69 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG-ELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP  147 (266)
Q Consensus        69 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~  147 (266)
                      ..+.+|++|.+.+|++++|+||||+||||+++++++ .+.+..|...+.....++++.|-..                  
T Consensus        18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~------------------   79 (222)
T cd03287          18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLT------------------   79 (222)
T ss_pred             CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEE------------------
Confidence            457899999999999999999999999999999999 6788888876655555555443211                  


Q ss_pred             CCcHHHHHHHHHhcCCCcccccCCCCCCCh--HHHHHHHHHHHHccCCCEEEEeCCCCCCCHH---H-HHHHHHHHhhc-
Q 024529          148 GVPEQKLRAHLGSFGVTGNLALQPMYTLSG--GQKSRVAFAKITFKKPHIILLDEPSNHLDLD---A-VEALIQGLVLF-  220 (266)
Q Consensus       148 ~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg--GqkqRv~lAral~~~p~lllLDEPt~~LD~~---~-~~~l~~~l~~~-  220 (266)
                                  .++-.+..    ...+|-  .|-+++.-+.-.+.+|.++|||||.+|.|+.   + ...+++.+.+. 
T Consensus        80 ------------~~~~~d~~----~~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~  143 (222)
T cd03287          80 ------------RMGASDSI----QHGMSTFMVELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEK  143 (222)
T ss_pred             ------------EecCcccc----ccccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhcc
Confidence                        01100000    011221  2334443333446789999999997777653   3 23566777766 


Q ss_pred             CCEEEEEecCHHHHH
Q 024529          221 QGGILMVSHDEHLIS  235 (266)
Q Consensus       221 ~~tiiivtHd~~~~~  235 (266)
                      +.++|++||+.++..
T Consensus       144 ~~~~i~~TH~~~l~~  158 (222)
T cd03287         144 KCLVLFVTHYPSLGE  158 (222)
T ss_pred             CCeEEEEcccHHHHH
Confidence            668999999999865

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK13695 putative NTPase; Provisional

Probab=99.65  E-value=7.1e-17  Score=132.93  Aligned_cols=152  Identities=17%  Similarity=0.218  Sum_probs=100.9

Q ss_pred             EEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGV  163 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l  163 (266)
                      .++|+|+||||||||++.|++.+.+ .|. .     ..+|+.|+....  .....+. +.....+     ....+...+.
T Consensus         2 ~i~ltG~~G~GKTTll~~i~~~l~~-~G~-~-----~~g~~~~~~~~~--~~~~~~~-~~~~~~~-----~~~~l~~~~~   66 (174)
T PRK13695          2 KIGITGPPGVGKTTLVLKIAELLKE-EGY-K-----VGGFYTEEVREG--GKRIGFK-IIDLDTG-----EEGILARVGF   66 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH-CCC-e-----EEEEEcHHHHhc--CCccceE-EEEcCCC-----CeEEccccCC
Confidence            5899999999999999999886654 342 1     234555432110  0000000 0000000     0112233333


Q ss_pred             -CcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC--CCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcCE
Q 024529          164 -TGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE--PSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEE  240 (266)
Q Consensus       164 -~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDE--Pt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d~  240 (266)
                       ......+....+||+++-+..+++..+.+|+++++||  |+.++|....+.+.+.+ +.+.++|+|+|+. .+..++|+
T Consensus        67 ~~~~~~~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~-~~~~~~i~v~h~~-~~~~~~~~  144 (174)
T PRK13695         67 PSRPRVGKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL-DSEKPVIATLHRR-SVHPFVQE  144 (174)
T ss_pred             CCCCceeeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH-hCCCeEEEEECch-hhHHHHHH
Confidence             2222234556899999999999999999999999999  77788877766666666 6788999999995 55568999


Q ss_pred             EEEEeCCeEEec
Q 024529          241 LWVVSEGKATPF  252 (266)
Q Consensus       241 i~~l~~G~i~~~  252 (266)
                      +..+.+|++...
T Consensus       145 i~~~~~~~i~~~  156 (174)
T PRK13695        145 IKSRPGGRVYEL  156 (174)
T ss_pred             HhccCCcEEEEE
Confidence            999999998644

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=99.59  E-value=1.2e-15  Score=137.92  Aligned_cols=165  Identities=24%  Similarity=0.317  Sum_probs=111.0

Q ss_pred             eCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcC--eeeEEEEe----cc----cc-CCCCCC--CcHHHHHHHhC
Q 024529           80 DLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA--KVRIAVFS----QH----HV-DGLDLS--SNPLLYMMRCF  146 (266)
Q Consensus        80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~--~~~i~~~~----q~----~~-~~~~~~--~~~~~~~~~~~  146 (266)
                      .+|++.+++|-||.||||-+++++|-.+|.-|.--...  ...++|+.    |+    .. +.+...  ....+.+.+..
T Consensus        98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~  177 (592)
T KOG0063|consen   98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAV  177 (592)
T ss_pred             CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHH
Confidence            58999999999999999999999999999877542111  11122221    11    00 000000  00011111100


Q ss_pred             C---------CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 024529          147 P---------GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL  217 (266)
Q Consensus       147 ~---------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l  217 (266)
                      .         ....+...++++.+.+. ...++.+..|||||.||.+||.+.++++++.++|||.+.||...+......+
T Consensus       178 k~~v~~~l~~~~~r~~~~~~~~~~~L~-~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~I  256 (592)
T KOG0063|consen  178 KGTVGSLLDRKDERDNKEEVCDQLDLN-NLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITI  256 (592)
T ss_pred             HHHHHHHHHHHhhcccHHHHHHHHHHh-hHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHH
Confidence            0         01112344556666665 3566788999999999999999999999999999999999998766544444


Q ss_pred             hh---cCCEEEEEecCHHHHHhhcCEEEEEe
Q 024529          218 VL---FQGGILMVSHDEHLISGSVEELWVVS  245 (266)
Q Consensus       218 ~~---~~~tiiivtHd~~~~~~~~d~i~~l~  245 (266)
                      +.   -..-||+|.||++.+.-..|-+.++-
T Consensus       257 Rsl~~p~~YiIVVEHDLsVLDylSDFiCcLY  287 (592)
T KOG0063|consen  257 RSLINPDRYIIVVEHDLSVLDYLSDFICCLY  287 (592)
T ss_pred             HHhhCCCCeEEEEEeechHHHhhhcceeEEe
Confidence            43   34569999999999998889888875

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=99.59  E-value=2.2e-15  Score=149.37  Aligned_cols=140  Identities=21%  Similarity=0.238  Sum_probs=91.7

Q ss_pred             eceEEEeC-CcEEEEECCCCchHHHHHHHHhCC-CCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcH
Q 024529           74 NLNFGIDL-DSRIAMVGPNGIGKSTILKLIAGE-LQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPE  151 (266)
Q Consensus        74 ~vsl~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl-~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~  151 (266)
                      ..++.+.. +.++.|+|||++||||+||.++.. +-+..|.          ++|-.....+    ..+            
T Consensus       318 pndi~l~~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~----------~vpa~~~~~i----~~~------------  371 (782)
T PRK00409        318 PKDISLGFDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGL----------PIPANEPSEI----PVF------------  371 (782)
T ss_pred             CceeEECCCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCC----------CcccCCCccc----ccc------------
Confidence            44555643 467999999999999999999643 1112220          1111100000    000            


Q ss_pred             HHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH----HHHHhhcCCEEEEE
Q 024529          152 QKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL----IQGLVLFQGGILMV  227 (266)
Q Consensus       152 ~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l----~~~l~~~~~tiiiv  227 (266)
                         ..++..+|-.+. ..+..+++|+||++++.|++++ .+|.++|||||++|+|+.....+    ++.+.+.+.++|++
T Consensus       372 ---~~i~~~ig~~~s-i~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIit  446 (782)
T PRK00409        372 ---KEIFADIGDEQS-IEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIAT  446 (782)
T ss_pred             ---ceEEEecCCccc-hhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence               011112333222 2356689999999999999988 89999999999999999865554    44455557799999


Q ss_pred             ecCHHHHHhhcCEEEEE
Q 024529          228 SHDEHLISGSVEELWVV  244 (266)
Q Consensus       228 tHd~~~~~~~~d~i~~l  244 (266)
                      ||+.++....+++..++
T Consensus       447 TH~~el~~~~~~~~~v~  463 (782)
T PRK00409        447 THYKELKALMYNREGVE  463 (782)
T ss_pred             CChHHHHHHHhcCCCeE
Confidence            99999888766655443

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=99.54  E-value=3.8e-14  Score=122.96  Aligned_cols=161  Identities=15%  Similarity=0.135  Sum_probs=102.1

Q ss_pred             eEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCC--------------CCCCCcHHHH
Q 024529           76 NFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDG--------------LDLSSNPLLY  141 (266)
Q Consensus        76 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~--------------~~~~~~~~~~  141 (266)
                      =+.+..|++++|+||+|+|||||++.|++......+.+.     .+.++.++....              -.........
T Consensus        10 ~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~-----~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~   84 (249)
T cd01128          10 FAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVY-----LIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERH   84 (249)
T ss_pred             ecccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeE-----EEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHH
Confidence            357889999999999999999999999998776533222     111211111000              0000011110


Q ss_pred             HHHh-----------CCCC-------cHHHHHHHHHhcCCCcccccCCCCCCChHH--------HHHHHHHHHHccCCCE
Q 024529          142 MMRC-----------FPGV-------PEQKLRAHLGSFGVTGNLALQPMYTLSGGQ--------KSRVAFAKITFKKPHI  195 (266)
Q Consensus       142 ~~~~-----------~~~~-------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq--------kqRv~lAral~~~p~l  195 (266)
                      ....           ..+.       +-.+.......+.      ......+|||+        +||+++||++..+++|
T Consensus        85 ~~~~~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~------~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsI  158 (249)
T cd01128          85 VQVAEMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVV------PPSGKILSGGVDANALHKPKRFFGAARNIEEGGSL  158 (249)
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhcc------ccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCce
Confidence            0000           0000       0111111122111      12345689999        9999999999999999


Q ss_pred             EEEeCCCCCCCHHHH-H-HHHHHHhhcCCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529          196 ILLDEPSNHLDLDAV-E-ALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKAT  250 (266)
Q Consensus       196 llLDEPt~~LD~~~~-~-~l~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~  250 (266)
                      ++|  ||+.+|..+. . -+.+.++....|.|++||++.... ..|.|.+|+.|++.
T Consensus       159 t~l--~T~~~d~~~~~~~~i~~~~~~~~~~~ivls~~la~~~-~~paI~vl~s~sr~  212 (249)
T cd01128         159 TII--ATALVDTGSRMDDVIFEEFKGTGNMELVLDRRLAERR-IFPAIDILKSGTRK  212 (249)
T ss_pred             EEe--eeheecCCCcccchHHHHHhcCCCcEEEEchHHhhCC-CCCeEEEcCCCCcc
Confidence            999  9999996432 2 345666655679999999999876 68999999999974

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>TIGR00618 sbcc exonuclease SbcC

Probab=99.53  E-value=3.1e-14  Score=146.20  Aligned_cols=80  Identities=21%  Similarity=0.181  Sum_probs=71.6

Q ss_pred             ccCCCCCCChHHHHHHHHHHHHcc----------CCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHH
Q 024529          168 ALQPMYTLSGGQKSRVAFAKITFK----------KPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLI  234 (266)
Q Consensus       168 ~~~~~~~LSgGqkqRv~lAral~~----------~p~lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~~  234 (266)
                      ..+++.+|||||++||+||+||+.          +|++|||||||++||+.+...+++.|..   .+.+|+||||++++.
T Consensus       944 ~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~ 1023 (1042)
T TIGR00618       944 SVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFR 1023 (1042)
T ss_pred             CcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH
Confidence            456889999999999999999985          7999999999999999998888777754   456899999999999


Q ss_pred             HhhcCEEEEEeCC
Q 024529          235 SGSVEELWVVSEG  247 (266)
Q Consensus       235 ~~~~d~i~~l~~G  247 (266)
                      ..+||+|+|++.+
T Consensus      1024 ~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618      1024 ERIPHRILVKKTN 1036 (1042)
T ss_pred             HhhCCEEEEEECC
Confidence            9999999999754

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR00634 recN DNA repair protein RecN

Probab=99.52  E-value=3.5e-14  Score=136.95  Aligned_cols=74  Identities=20%  Similarity=0.280  Sum_probs=66.3

Q ss_pred             CCCChHHHHHHHHHHHHccC----CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeC
Q 024529          173 YTLSGGQKSRVAFAKITFKK----PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSE  246 (266)
Q Consensus       173 ~~LSgGqkqRv~lAral~~~----p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~  246 (266)
                      ..|||||+||++||++++..    |++|||||||+|||+.+...+.+.|.+.  +.+||+|||++..+. +||++++|++
T Consensus       439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~-~ad~~~~l~k  517 (563)
T TIGR00634       439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAA-HADAHFKVEK  517 (563)
T ss_pred             hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHH-hcCeEEEEEE
Confidence            46899999999999999875    6999999999999999999888887764  568999999999886 8999999986


Q ss_pred             C
Q 024529          247 G  247 (266)
Q Consensus       247 G  247 (266)
                      |
T Consensus       518 ~  518 (563)
T TIGR00634       518 E  518 (563)
T ss_pred             c
Confidence            4

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PHA02562 46 endonuclease subunit; Provisional

Probab=99.52  E-value=3.6e-14  Score=136.87  Aligned_cols=78  Identities=22%  Similarity=0.373  Sum_probs=68.2

Q ss_pred             CCCCCChHHHHHHHHHHHHc----------cCCCEEEEeCCC-CCCCHHHHHHHHHHHhhc-CCEEEEEecCHHHHHhhc
Q 024529          171 PMYTLSGGQKSRVAFAKITF----------KKPHIILLDEPS-NHLDLDAVEALIQGLVLF-QGGILMVSHDEHLISGSV  238 (266)
Q Consensus       171 ~~~~LSgGqkqRv~lAral~----------~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~-~~tiiivtHd~~~~~~~~  238 (266)
                      ++.+|||||+||++||++|+          .+|++||||||| ++||+.+...+.+.|.+. +.+||+|||+.+... .|
T Consensus       465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~~~~~iiiish~~~~~~-~~  543 (562)
T PHA02562        465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSLKDTNVFVISHKDHDPQ-KF  543 (562)
T ss_pred             ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhCCCCeEEEEECchhchh-hh
Confidence            56899999999999999987          599999999998 789999999999988876 458999999987765 68


Q ss_pred             CEEEEEeC-CeE
Q 024529          239 EELWVVSE-GKA  249 (266)
Q Consensus       239 d~i~~l~~-G~i  249 (266)
                      |++++|.+ |+.
T Consensus       544 d~~~~l~~~~~~  555 (562)
T PHA02562        544 DRHLKMEKVGRF  555 (562)
T ss_pred             hcEEEEEEECCe
Confidence            99999986 554

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=99.50  E-value=9e-14  Score=118.46  Aligned_cols=136  Identities=18%  Similarity=0.190  Sum_probs=85.1

Q ss_pred             CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC-CceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCC
Q 024529           69 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-SSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP  147 (266)
Q Consensus        69 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~  147 (266)
                      ..+-+|++|+.++|++++|+||||+|||||++++++..-. ..|.-.......++++.                      
T Consensus        17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~~~i~~~~----------------------   74 (218)
T cd03286          17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKSMRLSLVD----------------------   74 (218)
T ss_pred             CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccccEecccc----------------------
Confidence            4678999999999999999999999999999999875321 11210000000011000                      


Q ss_pred             CCcHHHHHHHHHhcCCCcccccCCCCCCCh--HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH----HHHHhhc-
Q 024529          148 GVPEQKLRAHLGSFGVTGNLALQPMYTLSG--GQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL----IQGLVLF-  220 (266)
Q Consensus       148 ~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg--GqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l----~~~l~~~-  220 (266)
                              .++..++-.+..    ...+|.  .|.+++.-....+.+|.++|||||++|+|+.....+    ++.|.+. 
T Consensus        75 --------~i~~~~~~~d~~----~~~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~  142 (218)
T cd03286          75 --------RIFTRIGARDDI----MKGESTFMVELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKV  142 (218)
T ss_pred             --------EEEEecCccccc----ccCcchHHHHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhc
Confidence                    001111111111    112222  345555444445678999999999999998764433    4555554 


Q ss_pred             CCEEEEEecCHHHHHhhc
Q 024529          221 QGGILMVSHDEHLISGSV  238 (266)
Q Consensus       221 ~~tiiivtHd~~~~~~~~  238 (266)
                      +.++|++||+.+++...+
T Consensus       143 ~~~~i~~TH~~el~~~~~  160 (218)
T cd03286         143 KCLTLFSTHYHSLCDEFH  160 (218)
T ss_pred             CCcEEEEeccHHHHHHhh
Confidence            678999999999988765

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=99.50  E-value=7.1e-14  Score=120.23  Aligned_cols=157  Identities=21%  Similarity=0.211  Sum_probs=89.8

Q ss_pred             EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHH-HHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCC
Q 024529           56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTI-LKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDL  134 (266)
Q Consensus        56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~  134 (266)
                      +.++++.+.++++          +++|+++.|+|+|||||||| +++++++.++....+         |+..+.    +.
T Consensus         8 ~~~~~ld~~l~gg----------i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~---------yi~~e~----~~   64 (230)
T PRK08533          8 LSRDELHKRLGGG----------IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVS---------YVSTQL----TT   64 (230)
T ss_pred             EEEeeeehhhCCC----------CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEE---------EEeCCC----CH
Confidence            4566666666432          68999999999999999999 799998766533322         222110    00


Q ss_pred             CCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHcc----CCCEEEEeCCCCCC----C
Q 024529          135 SSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK----KPHIILLDEPSNHL----D  206 (266)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~----~p~lllLDEPt~~L----D  206 (266)
                       ......+.. . +.+.+   +.... +.-.. .+.. ..+|+++.++-.+.+.+..    +|+++++||||+++    |
T Consensus        65 -~~~~~~~~~-~-g~~~~---~~~~~-~~l~~-~~~~-~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d  135 (230)
T PRK08533         65 -TEFIKQMMS-L-GYDIN---KKLIS-GKLLY-IPVY-PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDAS  135 (230)
T ss_pred             -HHHHHHHHH-h-CCchH---HHhhc-CcEEE-EEec-ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcc
Confidence             011111111 1 11111   11111 10000 1111 2467776666555554433    69999999999999    7


Q ss_pred             HHHHHHHHHHHhh---cCCEEEEEecCHHHH--------HhhcCEEEEEe
Q 024529          207 LDAVEALIQGLVL---FQGGILMVSHDEHLI--------SGSVEELWVVS  245 (266)
Q Consensus       207 ~~~~~~l~~~l~~---~~~tiiivtHd~~~~--------~~~~d~i~~l~  245 (266)
                      +.....+.+.++.   .+. ++++||+....        ..+||-|+.|+
T Consensus       136 ~~~~~~l~~~l~~l~~~g~-tvi~t~~~~~~~~~~~~~~~~~~DgvI~L~  184 (230)
T PRK08533        136 EVAVNDLMAFFKRISSLNK-VIILTANPKELDESVLTILRTAATMLIRLE  184 (230)
T ss_pred             hHHHHHHHHHHHHHHhCCC-EEEEEecccccccccceeEEEeeeEEEEEE
Confidence            7777777776653   344 44556665432        34568888776

>PRK10869 recombination and repair protein; Provisional

Probab=99.47  E-value=1.8e-13  Score=131.45  Aligned_cols=73  Identities=21%  Similarity=0.271  Sum_probs=65.3

Q ss_pred             CCChHHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCC
Q 024529          174 TLSGGQKSRVAFAKITFK----KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEG  247 (266)
Q Consensus       174 ~LSgGqkqRv~lAral~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G  247 (266)
                      .|||||+||++||++++.    +|+++|||||++|||..+...+.+.+++.  +.+||+|||++..+ .+||+++.+.++
T Consensus       430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~-~~ad~~~~v~k~  508 (553)
T PRK10869        430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVA-GCGHQHFFVSKE  508 (553)
T ss_pred             hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEecc
Confidence            489999999999999996    68999999999999999999988888765  36899999999877 589999999763

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=99.47  E-value=8.4e-13  Score=122.92  Aligned_cols=161  Identities=14%  Similarity=0.226  Sum_probs=94.5

Q ss_pred             CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeee-------------------EEEEecccc
Q 024529           69 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR-------------------IAVFSQHHV  129 (266)
Q Consensus        69 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~-------------------i~~~~q~~~  129 (266)
                      ..+++++ |.+.+|++++|+|+||+|||||+++|+|+.+|+.|.|...|...                   +.++.+.  
T Consensus       146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~--  222 (438)
T PRK07721        146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATS--  222 (438)
T ss_pred             hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECC--
Confidence            4578999 99999999999999999999999999999999999876432110                   1111100  


Q ss_pred             CCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCCh-HHHHHHHHHHHHccCCCEEEEeCC--CCCCC
Q 024529          130 DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSG-GQKSRVAFAKITFKKPHIILLDEP--SNHLD  206 (266)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg-GqkqRv~lAral~~~p~lllLDEP--t~~LD  206 (266)
                           ...+...+...+   .--.+.+++..-|-+- +  --..+|+- -|-+| .|+         +.+.||  |+|+|
T Consensus       223 -----~~~~~~r~~~~~---~a~~iAEyfr~~g~~V-l--l~~Dsltr~A~A~r-Eis---------l~~ge~P~~~G~d  281 (438)
T PRK07721        223 -----DQPALMRIKGAY---TATAIAEYFRDQGLNV-M--LMMDSVTRVAMAQR-EIG---------LAVGEPPTTKGYT  281 (438)
T ss_pred             -----CCCHHHHHHHHH---HHHHHHHHHHHCCCcE-E--EEEeChHHHHHHHH-HHH---------HhcCCCCccccCC
Confidence                 000111000000   0011112221112110 0  01122221 11111 000         112365  78999


Q ss_pred             HHHHHHHHHHHhhcC----C------EEEEEecCHHHHHhhcCEEEEEeCCeEEecCCCh
Q 024529          207 LDAVEALIQGLVLFQ----G------GILMVSHDEHLISGSVEELWVVSEGKATPFHGTF  256 (266)
Q Consensus       207 ~~~~~~l~~~l~~~~----~------tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~  256 (266)
                      +.....+.+.+.+.+    +      ||++.+||++.  .+||++..+.+|+++ ..+..
T Consensus       282 p~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e--~i~d~v~~i~dG~Iv-ls~~l  338 (438)
T PRK07721        282 PSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE--PIADTVRGILDGHFV-LDRQL  338 (438)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc--hhhhhEEEecCEEEE-EeccH
Confidence            998887777665432    3      79999999985  789999999999996 45543

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=99.46  E-value=8.2e-13  Score=122.28  Aligned_cols=162  Identities=17%  Similarity=0.212  Sum_probs=110.5

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCC
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDL  134 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~  134 (266)
                      .++-+.++..|..+..+++.+ |.+.+|++++|+|+||+|||||+++|+|..+|+.|.|...+        +..      
T Consensus       130 ~~~r~~i~~~l~TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iG--------erg------  194 (432)
T PRK06793        130 AFEREEITDVFETGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVG--------ERG------  194 (432)
T ss_pred             chheechhhccCCCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCC--------CCc------
Confidence            467777887786555677775 99999999999999999999999999999999888664321        111      


Q ss_pred             CCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHc-------cCCCEEEEeCCCCCCCH
Q 024529          135 SSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF-------KKPHIILLDEPSNHLDL  207 (266)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~-------~~p~lllLDEPt~~LD~  207 (266)
                       .+..+++            ...+..-++.....-....+.|.|+|.|++.+.+.+       .++-++++|+||++.|+
T Consensus       195 -~ev~e~~------------~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A  261 (432)
T PRK06793        195 -REVKDFI------------RKELGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADA  261 (432)
T ss_pred             -ccHHHHH------------HHHhhhcccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHH
Confidence             1111211            111222222211111345789999999999999887       78999999999999999


Q ss_pred             HHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529          208 DAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKAT  250 (266)
Q Consensus       208 ~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~  250 (266)
                      .  .++-..+.+.   +.+..+.||-..++++.+    ....|.+.
T Consensus       262 ~--reisl~~~e~p~~G~~~~~~s~l~~L~ERag----~~~~GSiT  301 (432)
T PRK06793        262 R--RSVDIAVKELPIGGKTLLMESYMKKLLERSG----KTQKGSIT  301 (432)
T ss_pred             H--HHHHHHhcCCCCCCeeeeeeccchhHHHHhc----cCCCcceE
Confidence            6  4443344332   346777788655555533    24677764

>PRK01156 chromosome segregation protein; Provisional

Probab=99.45  E-value=6e-13  Score=134.95  Aligned_cols=75  Identities=29%  Similarity=0.455  Sum_probs=65.0

Q ss_pred             CCCCCCChHHHHHHHH------HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHh----hcC--CEEEEEecCHHHHHhh
Q 024529          170 QPMYTLSGGQKSRVAF------AKITFKKPHIILLDEPSNHLDLDAVEALIQGLV----LFQ--GGILMVSHDEHLISGS  237 (266)
Q Consensus       170 ~~~~~LSgGqkqRv~l------Aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~----~~~--~tiiivtHd~~~~~~~  237 (266)
                      .++..|||||++|++|      |++++.+|++++|||||++||+.....+.+.+.    ..+  .+||+||||.+++. +
T Consensus       797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~-~  875 (895)
T PRK01156        797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLS-V  875 (895)
T ss_pred             CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHH-h
Confidence            4678999999999975      589999999999999999999999888877664    222  37999999999885 8


Q ss_pred             cCEEEEEe
Q 024529          238 VEELWVVS  245 (266)
Q Consensus       238 ~d~i~~l~  245 (266)
                      ||+++.+.
T Consensus       876 ~d~ii~~~  883 (895)
T PRK01156        876 ADVAYEVK  883 (895)
T ss_pred             cCeEEEEE
Confidence            99999997

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.44  E-value=9e-13  Score=111.89  Aligned_cols=49  Identities=16%  Similarity=0.219  Sum_probs=43.1

Q ss_pred             CCCCChH--HHHHHHHHHHHccCCCEEEEeCCC-----CCCCHHHHHHHHHHHhhc
Q 024529          172 MYTLSGG--QKSRVAFAKITFKKPHIILLDEPS-----NHLDLDAVEALIQGLVLF  220 (266)
Q Consensus       172 ~~~LSgG--qkqRv~lAral~~~p~lllLDEPt-----~~LD~~~~~~l~~~l~~~  220 (266)
                      .+..||+  |++++.||++++.+|+++++||||     ++||+..++.+.+.+.+.
T Consensus       148 ~Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~  203 (215)
T PTZ00132        148 ISAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAA  203 (215)
T ss_pred             EeCCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHH
Confidence            3445555  999999999999999999999999     999999999999888764

>PRK03918 chromosome segregation protein; Provisional

Probab=99.44  E-value=3.3e-13  Score=136.53  Aligned_cols=76  Identities=29%  Similarity=0.447  Sum_probs=65.3

Q ss_pred             cCCCCCCChHHHH------HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcC
Q 024529          169 LQPMYTLSGGQKS------RVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVE  239 (266)
Q Consensus       169 ~~~~~~LSgGqkq------Rv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d  239 (266)
                      +.++..|||||++      |++||++++.+|+++||||||++||+.++..+.+.|..+   +.+||+||||.++. .+||
T Consensus       783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~-~~~d  861 (880)
T PRK03918        783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELK-DAAD  861 (880)
T ss_pred             cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH-HhCC
Confidence            3577899999999      555666888999999999999999999999888877653   45899999999865 5899


Q ss_pred             EEEEEe
Q 024529          240 ELWVVS  245 (266)
Q Consensus       240 ~i~~l~  245 (266)
                      ++++|.
T Consensus       862 ~~~~l~  867 (880)
T PRK03918        862 YVIRVS  867 (880)
T ss_pred             eEEEEE
Confidence            999997

>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A

Probab=99.42  E-value=1.7e-13  Score=116.74  Aligned_cols=64  Identities=27%  Similarity=0.482  Sum_probs=51.2

Q ss_pred             CCCCCChHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHH
Q 024529          171 PMYTLSGGQKSRVAFAKITFKKP---HIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLI  234 (266)
Q Consensus       171 ~~~~LSgGqkqRv~lAral~~~p---~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~  234 (266)
                      +...+|.|+++.+.|+.++...+   .++++|||-++|+|..+..+++.|...   +..||++||++.++
T Consensus       233 ~~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il  302 (303)
T PF13304_consen  233 PLSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL  302 (303)
T ss_dssp             GGS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred             eeccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence            35678999999999888887766   899999999999999999999988754   35799999998765

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=99.40  E-value=1.4e-12  Score=107.97  Aligned_cols=78  Identities=17%  Similarity=0.069  Sum_probs=60.5

Q ss_pred             ccCCCCCCChHHHH------HHHHHHHHccCCCEEEEeCCCCCCC---HHHHHHH---HHHHhhcCCEEEEEecCHHH--
Q 024529          168 ALQPMYTLSGGQKS------RVAFAKITFKKPHIILLDEPSNHLD---LDAVEAL---IQGLVLFQGGILMVSHDEHL--  233 (266)
Q Consensus       168 ~~~~~~~LSgGqkq------Rv~lAral~~~p~lllLDEPt~~LD---~~~~~~l---~~~l~~~~~tiiivtHd~~~--  233 (266)
                      .+.++..+|+|++|      ....+.+...+|+++++|||++.+|   ......+   +..+++.+.|+|+++|+...  
T Consensus        65 ~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~  144 (187)
T cd01124          65 VDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEG  144 (187)
T ss_pred             EecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCC
Confidence            45667889999998      5555555678999999999999999   5554444   44555567899999998765  


Q ss_pred             -------HHhhcCEEEEEe
Q 024529          234 -------ISGSVEELWVVS  245 (266)
Q Consensus       234 -------~~~~~d~i~~l~  245 (266)
                             +..+||.++.|+
T Consensus       145 ~~~~~~~~~~~aD~ii~l~  163 (187)
T cd01124         145 TGFGGGDVEYLVDGVIRLR  163 (187)
T ss_pred             cccCcCceeEeeeEEEEEE
Confidence                   677899999886

A related protein is found in archaea.

>TIGR00606 rad50 rad50

Probab=99.39  E-value=6.8e-13  Score=138.98  Aligned_cols=75  Identities=32%  Similarity=0.424  Sum_probs=64.2

Q ss_pred             CCCCCChHHHH------HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--------CCEEEEEecCHHHHHh
Q 024529          171 PMYTLSGGQKS------RVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--------QGGILMVSHDEHLISG  236 (266)
Q Consensus       171 ~~~~LSgGqkq------Rv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--------~~tiiivtHd~~~~~~  236 (266)
                      ..+.|||||+|      |++||++++.+|++|+|||||++||+.+...+...|...        +.+||+||||++++..
T Consensus      1196 ~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~ 1275 (1311)
T TIGR00606      1196 MRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVEL 1275 (1311)
T ss_pred             CCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHH
Confidence            44789999999      999999999999999999999999999988877666442        4689999999999998


Q ss_pred             hc-----CEEEEEe
Q 024529          237 SV-----EELWVVS  245 (266)
Q Consensus       237 ~~-----d~i~~l~  245 (266)
                      +|     +++|-+.
T Consensus      1276 ~~~~~~~~~~~~~~ 1289 (1311)
T TIGR00606      1276 LGRSEYVEKFYRLK 1289 (1311)
T ss_pred             Hhhccccceeeeee
Confidence            75     5556553

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=99.38  E-value=1.7e-12  Score=133.12  Aligned_cols=78  Identities=23%  Similarity=0.213  Sum_probs=70.0

Q ss_pred             cCCCCCCChHHHHHHHHHHHHcc--------CCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHHhh
Q 024529          169 LQPMYTLSGGQKSRVAFAKITFK--------KPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGS  237 (266)
Q Consensus       169 ~~~~~~LSgGqkqRv~lAral~~--------~p~lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~~~~~  237 (266)
                      .+++.+|||||+++++||+||+.        +|++||+||||++||+.+...+++.|..   .+.+|+||||..++..++
T Consensus       944 ~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i 1023 (1047)
T PRK10246        944 VRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERI 1023 (1047)
T ss_pred             CCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhc
Confidence            47889999999999999999995        8999999999999999999888877654   467999999999999999


Q ss_pred             cCEEEEEeC
Q 024529          238 VEELWVVSE  246 (266)
Q Consensus       238 ~d~i~~l~~  246 (266)
                      ..+|.|-..
T Consensus      1024 ~~qi~V~k~ 1032 (1047)
T PRK10246       1024 PVQIKVKKI 1032 (1047)
T ss_pred             cceEEEEEC
Confidence            999888865

>COG3910 Predicted ATPase [General function prediction only]

Probab=99.36  E-value=2.3e-11  Score=99.46  Aligned_cols=79  Identities=22%  Similarity=0.250  Sum_probs=61.1

Q ss_pred             CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHHhhcCEEEEEeC
Q 024529          170 QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSE  246 (266)
Q Consensus       170 ~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~~~~~~d~i~~l~~  246 (266)
                      +.....|.||----.+.+.+ .+.-++|||||-++|.|.-+-+++..|.+   .+..+||+||.+=++.----+|+.++.
T Consensus       125 ~sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~~  203 (233)
T COG3910         125 RSLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEISE  203 (233)
T ss_pred             cchhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEec
Confidence            34567899998665555554 46789999999999999887777766654   466799999999776644568888988


Q ss_pred             CeE
Q 024529          247 GKA  249 (266)
Q Consensus       247 G~i  249 (266)
                      +.+
T Consensus       204 ~g~  206 (233)
T COG3910         204 SGI  206 (233)
T ss_pred             CCc
Confidence            766

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.35  E-value=8.1e-12  Score=120.78  Aligned_cols=103  Identities=26%  Similarity=0.297  Sum_probs=85.8

Q ss_pred             HHhcCCCcccccCCCCCCChHHHHHHHHHHHHccC--CCEEEEeCCCCCCCHHHHHHHHHHHh---hcCCEEEEEecCHH
Q 024529          158 LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK--PHIILLDEPSNHLDLDAVEALIQGLV---LFQGGILMVSHDEH  232 (266)
Q Consensus       158 l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~--p~lllLDEPt~~LD~~~~~~l~~~l~---~~~~tiiivtHd~~  232 (266)
                      |-.+||...-.++...+|||||.||+-||.-+=++  -=+++||||+-||-+..-+.+++.|+   +.+.|+|+|.||.+
T Consensus       465 L~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDed  544 (935)
T COG0178         465 LVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDED  544 (935)
T ss_pred             HHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHH
Confidence            44567776557788999999999999999999765  34889999999999988888777664   56789999999999


Q ss_pred             HHHhhcCEEEEEe------CCeEEecCCChhHHHHH
Q 024529          233 LISGSVEELWVVS------EGKATPFHGTFHDYKKM  262 (266)
Q Consensus       233 ~~~~~~d~i~~l~------~G~i~~~~g~~~~~~~~  262 (266)
                      .+. .||+|+-|-      .|+|+ +.|+++++.+.
T Consensus       545 ti~-~AD~iIDiGPgAG~~GGeIv-~~Gtp~~i~~~  578 (935)
T COG0178         545 TIR-AADHIIDIGPGAGEHGGEIV-AEGTPEELLAN  578 (935)
T ss_pred             HHh-hcCEEEeeCCCCCcCCCEEE-EccCHHHHHhC
Confidence            987 599999883      56775 89999998754

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.34  E-value=2.3e-12  Score=133.45  Aligned_cols=76  Identities=28%  Similarity=0.371  Sum_probs=65.9

Q ss_pred             cCCCCCCChHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEE
Q 024529          169 LQPMYTLSGGQKSRVAFAKITF----KKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELW  242 (266)
Q Consensus       169 ~~~~~~LSgGqkqRv~lAral~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~  242 (266)
                      +.++..|||||++|++||++++    .+|+++||||||++||+.+...+.+.+...  +.+||||||++.++. +||+++
T Consensus      1084 ~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~~-~~d~~~ 1162 (1179)
T TIGR02168      1084 NQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTME-VADQLY 1162 (1179)
T ss_pred             cccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHHH-HhhhHe
Confidence            4567899999999999999984    678999999999999999999988888664  358999999999875 799997


Q ss_pred             EEe
Q 024529          243 VVS  245 (266)
Q Consensus       243 ~l~  245 (266)
                      .+.
T Consensus      1163 ~~~ 1165 (1179)
T TIGR02168      1163 GVT 1165 (1179)
T ss_pred             eee
Confidence            653

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=99.27  E-value=9.6e-12  Score=93.80  Aligned_cols=44  Identities=11%  Similarity=0.133  Sum_probs=39.2

Q ss_pred             CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe
Q 024529           69 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK  118 (266)
Q Consensus        69 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~  118 (266)
                      ..+|++++|++++|++++|+||||||||||++++.      +|++.+.+.
T Consensus         2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~   45 (107)
T cd00820           2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGD   45 (107)
T ss_pred             ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeE
Confidence            35899999999999999999999999999999986      788876653

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=99.27  E-value=9.3e-12  Score=111.60  Aligned_cols=143  Identities=17%  Similarity=0.176  Sum_probs=89.4

Q ss_pred             ceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHH
Q 024529           75 LNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKL  154 (266)
Q Consensus        75 vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (266)
                      +++.+..|+.++|+||+|||||||+++|++++++..|.+.+..          .. .+....          +.      
T Consensus       137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied----------~~-El~~~~----------~~------  189 (308)
T TIGR02788       137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIED----------TR-EIFLPH----------PN------  189 (308)
T ss_pred             HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcC----------cc-ccCCCC----------CC------
Confidence            5577889999999999999999999999999998887654321          10 011110          00      


Q ss_pred             HHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCC-EEEEEecCHHH
Q 024529          155 RAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQG-GILMVSHDEHL  233 (266)
Q Consensus       155 ~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-tiiivtHd~~~  233 (266)
                           .+.+............|-    .-.++.+|..+|+++++|||.+   .+ ...+++.+. .+. +++.++|..+.
T Consensus       190 -----~~~l~~~~~~~~~~~~~~----~~~l~~~Lr~~pd~ii~gE~r~---~e-~~~~l~a~~-~g~~~~i~T~Ha~~~  255 (308)
T TIGR02788       190 -----YVHLFYSKGGQGLAKVTP----KDLLQSCLRMRPDRIILGELRG---DE-AFDFIRAVN-TGHPGSITTLHAGSP  255 (308)
T ss_pred             -----EEEEEecCCCCCcCccCH----HHHHHHHhcCCCCeEEEeccCC---HH-HHHHHHHHh-cCCCeEEEEEeCCCH
Confidence                 000000000000111222    2257778899999999999996   22 233444444 343 57999999985


Q ss_pred             HHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          234 ISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       234 ~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      .. ..+|+..|..|++. ..|...++.
T Consensus       256 ~~-~~~Rl~~l~~~~~~-~~g~~~~~~  280 (308)
T TIGR02788       256 EE-AFEQLALMVKSSQA-GLGLDFAYI  280 (308)
T ss_pred             HH-HHHHHHHHhhcccc-ccCCCHHHH
Confidence            54 58999888888775 345555443

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>PRK13830 conjugal transfer protein TrbE; Provisional

Probab=99.24  E-value=1.4e-10  Score=116.43  Aligned_cols=61  Identities=16%  Similarity=0.126  Sum_probs=51.3

Q ss_pred             ccCCCEEEEeCCCCCC-CHHHHHHHHHHHh---hcCCEEEEEecCHHHHH---------hhcCEEEEEeCCeEE
Q 024529          190 FKKPHIILLDEPSNHL-DLDAVEALIQGLV---LFQGGILMVSHDEHLIS---------GSVEELWVVSEGKAT  250 (266)
Q Consensus       190 ~~~p~lllLDEPt~~L-D~~~~~~l~~~l~---~~~~tiiivtHd~~~~~---------~~~d~i~~l~~G~i~  250 (266)
                      ..+|.++++|||+.+| |+...+.+.+.++   +.++++|++||+++.+.         ..|+..++|.+|++.
T Consensus       650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~  723 (818)
T PRK13830        650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAR  723 (818)
T ss_pred             CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCcccc
Confidence            5799999999999999 6887777766654   45779999999999875         479999999999874

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.24  E-value=2e-11  Score=126.64  Aligned_cols=76  Identities=24%  Similarity=0.190  Sum_probs=66.3

Q ss_pred             CCCCCCChHHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEE
Q 024529          170 QPMYTLSGGQKSRVAFAKITFK----KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWV  243 (266)
Q Consensus       170 ~~~~~LSgGqkqRv~lAral~~----~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~  243 (266)
                      +++..||||||++++||++|+.    +|+++|||||+++||+..+..+.+.|...  +..+|+|||+...+ .+||+++.
T Consensus      1070 ~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~~~~-~~~d~~~~ 1148 (1164)
T TIGR02169      1070 QRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSPMI-EYADRAIG 1148 (1164)
T ss_pred             CcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcHHHH-HhcceeEe
Confidence            4567899999999999999984    78999999999999999999999988765  35799999999876 58999987


Q ss_pred             EeC
Q 024529          244 VSE  246 (266)
Q Consensus       244 l~~  246 (266)
                      +..
T Consensus      1149 ~~~ 1151 (1164)
T TIGR02169      1149 VTM 1151 (1164)
T ss_pred             EEE
Confidence            753

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=99.23  E-value=3.6e-11  Score=96.30  Aligned_cols=127  Identities=16%  Similarity=0.079  Sum_probs=74.3

Q ss_pred             EEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGV  163 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l  163 (266)
                      +++|.||||+|||||++.+++...+..|.+.        |+..+..      ...........      ......+.+. 
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~--------~~~~e~~------~~~~~~~~~~~------~~~~~~~~~~-   59 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIATKGGKVV--------YVDIEEE------IEELTERLIGE------SLKGALDNLI-   59 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEE--------EEECCcc------hHHHHHHHhhh------hhccccccEE-
Confidence            4789999999999999999998766555543        3332211      01111000000      0000011111 


Q ss_pred             CcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCC----------CHHHHHHHH---HHHhhcCCEEEEEecC
Q 024529          164 TGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHL----------DLDAVEALI---QGLVLFQGGILMVSHD  230 (266)
Q Consensus       164 ~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~L----------D~~~~~~l~---~~l~~~~~tiiivtHd  230 (266)
                         .........+.++.++++.+++...+|+++++|||++-+          |......+.   +.+++.+.++|+++|.
T Consensus        60 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~  136 (165)
T cd01120          60 ---IVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQV  136 (165)
T ss_pred             ---EEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEec
Confidence               111122345566677888999999999999999999554          333334333   3334456799999997


Q ss_pred             HHHH
Q 024529          231 EHLI  234 (266)
Q Consensus       231 ~~~~  234 (266)
                      ....
T Consensus       137 ~~~~  140 (165)
T cd01120         137 PSGD  140 (165)
T ss_pred             CCcc
Confidence            7544

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PRK02224 chromosome segregation protein; Provisional

Probab=99.20  E-value=3.9e-11  Score=121.64  Aligned_cols=76  Identities=30%  Similarity=0.475  Sum_probs=64.2

Q ss_pred             CCCCCChHHHH------HHHHHHHHccC-----C-CEEEEeCCCCCCCHHHHHHHHHHHhhc---CC-EEEEEecCHHHH
Q 024529          171 PMYTLSGGQKS------RVAFAKITFKK-----P-HIILLDEPSNHLDLDAVEALIQGLVLF---QG-GILMVSHDEHLI  234 (266)
Q Consensus       171 ~~~~LSgGqkq------Rv~lAral~~~-----p-~lllLDEPt~~LD~~~~~~l~~~l~~~---~~-tiiivtHd~~~~  234 (266)
                      ++..|||||++      |+++|++++.+     | +++||||||++||+..+..+.+.|...   +. +||+||||.+++
T Consensus       778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~  857 (880)
T PRK02224        778 EPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELV  857 (880)
T ss_pred             ChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHH
Confidence            46799999999      89999998863     2 679999999999999988888776553   33 799999999998


Q ss_pred             HhhcCEEEEEeCC
Q 024529          235 SGSVEELWVVSEG  247 (266)
Q Consensus       235 ~~~~d~i~~l~~G  247 (266)
                      . .||+++.|...
T Consensus       858 ~-~ad~~~~~~~~  869 (880)
T PRK02224        858 G-AADDLVRVEKD  869 (880)
T ss_pred             H-hcCeeEEeecC
Confidence            6 69999999643

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=99.17  E-value=1.8e-10  Score=99.15  Aligned_cols=148  Identities=17%  Similarity=0.182  Sum_probs=86.5

Q ss_pred             EEeCCcEEEEECCCCchHHHHHHHHh-CCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHH
Q 024529           78 GIDLDSRIAMVGPNGIGKSTILKLIA-GELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRA  156 (266)
Q Consensus        78 ~i~~Ge~~~l~G~nGsGKSTLl~~l~-Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (266)
                      -+++|.++.|.|++|||||||...++ +..+ ..+.        +.|+..+..    . ......+. .+ +.+-.   +
T Consensus        21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~~--------~~y~~~e~~----~-~~~~~~~~-~~-g~~~~---~   81 (234)
T PRK06067         21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALK-QGKK--------VYVITTENT----S-KSYLKQME-SV-KIDIS---D   81 (234)
T ss_pred             CCcCCcEEEEECCCCCChHHHHHHHHHHHHh-CCCE--------EEEEEcCCC----H-HHHHHHHH-HC-CCChh---H
Confidence            47899999999999999999998874 3222 1222        223322110    0 01111111 11 11111   1


Q ss_pred             HHH--hcCCCcccccCCCCCCChHHHHHHHHHHHHcc--CCCEEEEeCCCCC---CCHHHHHHHHHHH---hhcCCEEEE
Q 024529          157 HLG--SFGVTGNLALQPMYTLSGGQKSRVAFAKITFK--KPHIILLDEPSNH---LDLDAVEALIQGL---VLFQGGILM  226 (266)
Q Consensus       157 ~l~--~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~--~p~lllLDEPt~~---LD~~~~~~l~~~l---~~~~~tiii  226 (266)
                      .+.  .+.+.+ ..-......|.++.+.+..+..++.  +|+++++||||+.   .|......+++.+   ++.+.|+++
T Consensus        82 ~~~~g~l~i~~-~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvll  160 (234)
T PRK06067         82 FFLWGYLRIFP-LNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILI  160 (234)
T ss_pred             HHhCCCceEEe-ccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence            111  111110 0011234567888999999999887  9999999999964   4455555554444   445679999


Q ss_pred             EecCHHH-------HHhhcCEEEEEe
Q 024529          227 VSHDEHL-------ISGSVEELWVVS  245 (266)
Q Consensus       227 vtHd~~~-------~~~~~d~i~~l~  245 (266)
                      ++|+..+       +..++|-++.|+
T Consensus       161 t~~~~~~~~~~~~~~~~l~DgvI~L~  186 (234)
T PRK06067        161 TLHPYAFSEELLSRIRSICDVYLKLR  186 (234)
T ss_pred             EecCCcCCHHHHHHHHhheEEEEEEE
Confidence            9997654       455678888776

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=99.14  E-value=3.9e-11  Score=111.48  Aligned_cols=47  Identities=28%  Similarity=0.364  Sum_probs=43.0

Q ss_pred             cceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCce-EEEEcCe
Q 024529           70 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG-TVFRSAK  118 (266)
Q Consensus        70 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~~~  118 (266)
                      .+|++|||++++||+++|+|||||||||||+  +|+..|++| +|.+++.
T Consensus        20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~   67 (504)
T TIGR03238        20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDAT   67 (504)
T ss_pred             HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCE
Confidence            4799999999999999999999999999999  788888888 7988774

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>TIGR00611 recf recF protein

Probab=99.07  E-value=3.4e-10  Score=103.74  Aligned_cols=62  Identities=21%  Similarity=0.166  Sum_probs=57.6

Q ss_pred             CCChHHHHHHHHHHHHcc---------CCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHH
Q 024529          174 TLSGGQKSRVAFAKITFK---------KPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLIS  235 (266)
Q Consensus       174 ~LSgGqkqRv~lAral~~---------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~  235 (266)
                      .+|.||+++++||.+|+.         +|+|||||||+++||+..+..+++.+...+.+|+++||+.+.+.
T Consensus       275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~~~qv~it~~~~~~~~  345 (365)
T TIGR00611       275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSLGVQVFVTAISLDHLK  345 (365)
T ss_pred             hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhcCCEEEEEecChhhcc
Confidence            699999999999999999         99999999999999999999999999766679999999987765

All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=99.05  E-value=4.4e-09  Score=81.14  Aligned_cols=115  Identities=25%  Similarity=0.301  Sum_probs=75.0

Q ss_pred             CCcEEEEECCCCchHHHHHHHHhCCCCCCc-eEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHH
Q 024529           81 LDSRIAMVGPNGIGKSTILKLIAGELQPSS-GTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLG  159 (266)
Q Consensus        81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~-G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  159 (266)
                      .+..+.|+||+||||||+++.|+....... +.++....         .    .........            .     
T Consensus         1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~---------~----~~~~~~~~~------------~-----   50 (148)
T smart00382        1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGE---------D----ILEEVLDQL------------L-----   50 (148)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCE---------E----ccccCHHHH------------H-----
Confidence            367899999999999999999999876554 22222110         0    000000000            0     


Q ss_pred             hcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH---------HHhhcCCEEEEEecC
Q 024529          160 SFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ---------GLVLFQGGILMVSHD  230 (266)
Q Consensus       160 ~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~---------~l~~~~~tiiivtHd  230 (266)
                        .   ..........++++..+..++++-..+|.++++||+..-.+.........         ........+|+++|.
T Consensus        51 --~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  125 (148)
T smart00382       51 --L---IIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND  125 (148)
T ss_pred             --h---hhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence              0   11122335788889999999999988899999999999999887654432         112224578888884

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=99.05  E-value=5.6e-10  Score=93.85  Aligned_cols=118  Identities=15%  Similarity=0.248  Sum_probs=71.0

Q ss_pred             EEEEECCCCchHHHHHHHHhCCCCCC-ceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGELQPS-SGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFG  162 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  162 (266)
                      ++.|.||+||||||+++.|++.+.+. .|.|....         ++....             .... .    .......
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e---------~~~E~~-------------~~~~-~----~~i~q~~   55 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIE---------DPIEFV-------------HESK-R----SLINQRE   55 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEc---------CCcccc-------------ccCc-c----ceeeecc
Confidence            78999999999999999998877643 45553211         111000             0000 0    0000000


Q ss_pred             CCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcCEEE
Q 024529          163 VTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELW  242 (266)
Q Consensus       163 l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d~i~  242 (266)
                      +.     .....++.      +++++|..+|+++++|||.   |.+....+++.. ..+..++.++|..+... ..+|++
T Consensus        56 vg-----~~~~~~~~------~i~~aLr~~pd~ii~gEir---d~e~~~~~l~~a-~~G~~v~~t~Ha~~~~~-~~~Rl~  119 (198)
T cd01131          56 VG-----LDTLSFEN------ALKAALRQDPDVILVGEMR---DLETIRLALTAA-ETGHLVMSTLHTNSAAK-TIDRII  119 (198)
T ss_pred             cC-----CCccCHHH------HHHHHhcCCcCEEEEcCCC---CHHHHHHHHHHH-HcCCEEEEEecCCcHHH-HHhHHH
Confidence            00     00112222      5889999999999999996   777766666544 45778999999887554 456654


Q ss_pred             EE
Q 024529          243 VV  244 (266)
Q Consensus       243 ~l  244 (266)
                      .+
T Consensus       120 ~l  121 (198)
T cd01131         120 DV  121 (198)
T ss_pred             hh
Confidence            43

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK05399 DNA mismatch repair protein MutS; Provisional

Probab=99.00  E-value=1.6e-09  Score=108.95  Aligned_cols=135  Identities=18%  Similarity=0.165  Sum_probs=87.6

Q ss_pred             cceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCC-CCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCC
Q 024529           70 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL-QPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPG  148 (266)
Q Consensus        70 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~  148 (266)
                      .+-+|+++. ..+.++.|+|||++||||+||.++-.. -..-|.          |+|-... .+.    .          
T Consensus       596 ~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G~----------~VPa~~a-~i~----~----------  649 (854)
T PRK05399        596 FVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLAQIGS----------FVPAESA-RIG----I----------  649 (854)
T ss_pred             eEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcCC----------ceeccce-Eec----c----------
Confidence            455777777 667899999999999999999986431 111221          1111100 000    0          


Q ss_pred             CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHcc--CCCEEEEeCC---CCCCCHHHH-HHHHHHHhhc-C
Q 024529          149 VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK--KPHIILLDEP---SNHLDLDAV-EALIQGLVLF-Q  221 (266)
Q Consensus       149 ~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~--~p~lllLDEP---t~~LD~~~~-~~l~~~l~~~-~  221 (266)
                           +..++.++|-.++    -...+|-=+.....++.+|-.  ++.++|+|||   |+.+|..+. ..+++.|.+. +
T Consensus       650 -----~d~I~triga~d~----i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~~~  720 (854)
T PRK05399        650 -----VDRIFTRIGASDD----LASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDKIG  720 (854)
T ss_pred             -----cCeeeeccCcccc----cccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhcCC
Confidence                 0112223443332    234678777777788887755  8999999999   999997764 4578888776 4


Q ss_pred             CEEEEEecCHHHHHhhcCE
Q 024529          222 GGILMVSHDEHLISGSVEE  240 (266)
Q Consensus       222 ~tiiivtHd~~~~~~~~d~  240 (266)
                      .++|++||+.++.. ++++
T Consensus       721 ~~~l~aTH~~el~~-l~~~  738 (854)
T PRK05399        721 AKTLFATHYHELTE-LEEK  738 (854)
T ss_pred             ceEEEEechHHHHH-Hhhh
Confidence            68999999966544 5553

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=98.99  E-value=1.6e-09  Score=110.20  Aligned_cols=76  Identities=29%  Similarity=0.386  Sum_probs=64.4

Q ss_pred             CCCCCCChHHHHHHHHHHHHc------cC--CCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhc
Q 024529          170 QPMYTLSGGQKSRVAFAKITF------KK--PHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSV  238 (266)
Q Consensus       170 ~~~~~LSgGqkqRv~lAral~------~~--p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~  238 (266)
                      +++.+|||||+-.++||-+|+      .+  -++|+|||||.+||+.++..+++.|...   +.+|+||||+.++.. .+
T Consensus       811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e-~~  889 (908)
T COG0419         811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKE-RA  889 (908)
T ss_pred             cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHH-hC
Confidence            688999999999888877664      45  6999999999999999999888877653   468999999999987 58


Q ss_pred             CEEEEEeC
Q 024529          239 EELWVVSE  246 (266)
Q Consensus       239 d~i~~l~~  246 (266)
                      |.++.++.
T Consensus       890 ~~~i~V~k  897 (908)
T COG0419         890 DVRIRVKK  897 (908)
T ss_pred             CeEEEEEe
Confidence            88887753

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=98.98  E-value=2e-09  Score=90.29  Aligned_cols=110  Identities=23%  Similarity=0.261  Sum_probs=67.9

Q ss_pred             EEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHH---hCC-CCcHHHHHHHHH
Q 024529           84 RIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMR---CFP-GVPEQKLRAHLG  159 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~l~  159 (266)
                      ++||+||||||||||.++|++++  ..|.+        .+++.+.+. .............   ..+ ..+.+...+.+.
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~--------~v~~~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   69 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKV--------VIISQDSYY-KDLSHEELEERKNNNYDHPDAFDFDLLISHLQ   69 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh--CCCCe--------EEEEecccc-cccccccHHHhccCCCCCCCcccHHHHHHHHH
Confidence            58999999999999999999987  22333        233332211 0011101100000   011 122344556666


Q ss_pred             hcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH
Q 024529          160 SFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLD  208 (266)
Q Consensus       160 ~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~  208 (266)
                      .+...+ ..+.|..++|.|++++..+   .+.+++++|+|+|+.+.++.
T Consensus        70 ~l~~~~-~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~~  114 (198)
T cd02023          70 DLKNGK-SVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDKE  114 (198)
T ss_pred             HHHCCC-CEeccccccccCcccCCce---ecCCCCEEEEechhhccchh
Confidence            666543 3457788999999876655   57889999999999999863

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>TIGR01026 fliI_yscN ATPase FliI/YscN family

Probab=98.97  E-value=7.4e-09  Score=96.74  Aligned_cols=49  Identities=24%  Similarity=0.408  Sum_probs=42.6

Q ss_pred             cCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEE
Q 024529           65 YPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF  114 (266)
Q Consensus        65 y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~  114 (266)
                      |..+..+++++ |.+.+|++++|+|+||+|||||+++|+|..+++.|.+.
T Consensus       147 l~TGi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~  195 (440)
T TIGR01026       147 LSTGVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIA  195 (440)
T ss_pred             ccceeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEE
Confidence            33345688999 99999999999999999999999999999999877553

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.

>PRK14079 recF recombination protein F; Provisional

Probab=98.93  E-value=2.4e-09  Score=97.58  Aligned_cols=74  Identities=19%  Similarity=0.143  Sum_probs=62.1

Q ss_pred             CCCChHHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcCEEEE
Q 024529          173 YTLSGGQKSRVAFAKITF---------KKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWV  243 (266)
Q Consensus       173 ~~LSgGqkqRv~lAral~---------~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d~i~~  243 (266)
                      ..+|+||++++++|..|+         .+|+++|||||+++||...+.++.+.+.....++|-.|+    ....|++++.
T Consensus       262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~q~~it~t~----~~~~~~~~~~  337 (349)
T PRK14079        262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLPQAIVAGTE----APPGAALTLR  337 (349)
T ss_pred             HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCCcEEEEcCC----CCCCCceEEE
Confidence            358999999999999998         899999999999999999999999988655444444443    3457999999


Q ss_pred             EeCCeEE
Q 024529          244 VSEGKAT  250 (266)
Q Consensus       244 l~~G~i~  250 (266)
                      +.+|++.
T Consensus       338 ~~~~~~~  344 (349)
T PRK14079        338 IEAGVFT  344 (349)
T ss_pred             EeccEec
Confidence            9999875

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=98.90  E-value=2.5e-09  Score=112.37  Aligned_cols=66  Identities=27%  Similarity=0.269  Sum_probs=57.8

Q ss_pred             cCCCCCCChHHHHHHH----HHHH--------HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHH
Q 024529          169 LQPMYTLSGGQKSRVA----FAKI--------TFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLI  234 (266)
Q Consensus       169 ~~~~~~LSgGqkqRv~----lAra--------l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~  234 (266)
                      ++.++.|||||||+++    +|++        +..+|+++||||||++||+.+...+++.+.+++.++||+||+++-.
T Consensus      1242 ~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l~~~~i~~s~~~Wg~ 1319 (1353)
T TIGR02680      1242 THRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRALDLDFVMTSEREWGC 1319 (1353)
T ss_pred             hccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHhCCCEEEEccchhcc
Confidence            3456899999999996    5655        5589999999999999999999999999999999999999987643

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=98.90  E-value=4.8e-09  Score=90.62  Aligned_cols=121  Identities=24%  Similarity=0.348  Sum_probs=70.5

Q ss_pred             CcEEEEECCCCchHHHHHHHHhC------------CCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCC
Q 024529           82 DSRIAMVGPNGIGKSTILKLIAG------------ELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGV  149 (266)
Q Consensus        82 Ge~~~l~G~nGsGKSTLl~~l~G------------l~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~  149 (266)
                      |....|+||.|+|||||+-.++=            ...+..|.|        .|+.-+        . ....        
T Consensus         1 g~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~V--------lyi~~E--------d-~~~~--------   55 (239)
T cd01125           1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRV--------VYLSAE--------D-PREE--------   55 (239)
T ss_pred             CceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceE--------EEEECC--------C-CHHH--------
Confidence            67889999999999999887752            111122222        222211        0 0011        


Q ss_pred             cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHH----------------HHccCCCEEEEeCCCCC------CCH
Q 024529          150 PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAK----------------ITFKKPHIILLDEPSNH------LDL  207 (266)
Q Consensus       150 ~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAr----------------al~~~p~lllLDEPt~~------LD~  207 (266)
                      -.+++..+...+++.+ ..++..  ..+|+.|++.+++                +...+|+++++| |++.      +|+
T Consensus        56 i~~Rl~~i~~~~~~~~-~~~rl~--~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~~~~~~~d~  131 (239)
T cd01125          56 IHRRLEAILQHLEPDD-AGDRLF--IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSFHGVSENDN  131 (239)
T ss_pred             HHHHHHHHHhhcCCcC-cccceE--EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHhCCCCcCCH
Confidence            1234444555454322 111211  1245555555443                345799999999 7754      688


Q ss_pred             HHHHHHHHHHh----hcCCEEEEEecCH
Q 024529          208 DAVEALIQGLV----LFQGGILMVSHDE  231 (266)
Q Consensus       208 ~~~~~l~~~l~----~~~~tiiivtHd~  231 (266)
                      .....+++.|.    +.+.+||+++|..
T Consensus       132 ~~~~~~~~~L~~~a~~~g~avl~v~H~~  159 (239)
T cd01125         132 GAMDAVIKALRRIAAQTGAAILLVHHVR  159 (239)
T ss_pred             HHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence            87777766654    3467999999976

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=98.88  E-value=4.9e-09  Score=97.52  Aligned_cols=63  Identities=21%  Similarity=0.312  Sum_probs=56.3

Q ss_pred             CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEc
Q 024529           53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS  116 (266)
Q Consensus        53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~  116 (266)
                      +..++.++++..|..+..+++.++ .|.+|++++|+||||||||||+++|+++.+|+.|.|...
T Consensus       137 p~~~~r~~v~~~l~TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~li  199 (450)
T PRK06002        137 PPAMTRARVETGLRTGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALV  199 (450)
T ss_pred             CCCeEeecceEEcCCCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeec
Confidence            456899999999976667888885 999999999999999999999999999999999987653

>COG4637 Predicted ATPase [General function prediction only]

Probab=98.88  E-value=3.5e-08  Score=86.85  Aligned_cols=72  Identities=25%  Similarity=0.345  Sum_probs=61.3

Q ss_pred             CCCChHHHHHHHHHHHHcc--CCCEEEEeCCCCCCCHHHHHHHHHHHhhcCC--EEEEEecCHHHHHhhcCEEEEE
Q 024529          173 YTLSGGQKSRVAFAKITFK--KPHIILLDEPSNHLDLDAVEALIQGLVLFQG--GILMVSHDEHLISGSVEELWVV  244 (266)
Q Consensus       173 ~~LSgGqkqRv~lAral~~--~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--tiiivtHd~~~~~~~~d~i~~l  244 (266)
                      ..||-|+.+-+++|.+|++  .|.+++||||-.+|-|.....+...+....+  -||++||..+++..+--+-++.
T Consensus       269 ~eLSDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~~~~sAak~sQv~VsTHS~rLl~~~e~~~v~~  344 (373)
T COG4637         269 RELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRSQVIVSTHSPRLLNAVEEHSVFW  344 (373)
T ss_pred             hhccccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHHHHHHhhccceEEEEeCCHHHHhhccccceEE
Confidence            4899999999999999986  6899999999999999999888888876543  7999999999998765444433

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.84  E-value=9.5e-09  Score=96.71  Aligned_cols=164  Identities=16%  Similarity=0.205  Sum_probs=88.9

Q ss_pred             ceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHH---HHhC-
Q 024529           71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYM---MRCF-  146 (266)
Q Consensus        71 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~---~~~~-  146 (266)
                      ++++.++.+..|.+++++||||+||||++..|++.+.+..|..      +++++.++.+   ..  ...+.+   .... 
T Consensus       245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~------kV~LI~~Dt~---Ri--gA~EQLr~~AeilG  313 (484)
T PRK06995        245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGAS------KVALLTTDSY---RI--GGHEQLRIYGKILG  313 (484)
T ss_pred             hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCC------eEEEEeCCcc---ch--hHHHHHHHHHHHhC
Confidence            4566777788999999999999999999999999887766642      4567766542   11  122221   1111 


Q ss_pred             -C-CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHH-HHHHHHHccCC-----CEEEEeCCCCCCCHHHHHHHHHHHh
Q 024529          147 -P-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSR-VAFAKITFKKP-----HIILLDEPSNHLDLDAVEALIQGLV  218 (266)
Q Consensus       147 -~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqR-v~lAral~~~p-----~lllLDEPt~~LD~~~~~~l~~~l~  218 (266)
                       + ..............++.+. ....+.+...+++.. +.-..+++.++     .+|+||.++.+-+   ..++.+.+.
T Consensus       314 Vpv~~~~~~~Dl~~aL~~L~d~-d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~---l~~i~~~f~  389 (484)
T PRK06995        314 VPVHAVKDAADLRLALSELRNK-HIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDT---LNEVVQAYR  389 (484)
T ss_pred             CCeeccCCchhHHHHHHhccCC-CeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHH---HHHHHHHhc
Confidence             1 0011122223333444332 234556644444322 22333344443     6899999987733   334444444


Q ss_pred             hcCCEEEEEec-C--------HHHHHhhcCEEEEEeCCeE
Q 024529          219 LFQGGILMVSH-D--------EHLISGSVEELWVVSEGKA  249 (266)
Q Consensus       219 ~~~~tiiivtH-d--------~~~~~~~~d~i~~l~~G~i  249 (266)
                      ..+.+-+|.|+ |        ++.+....=-|..+..|+-
T Consensus       390 ~~~~~g~IlTKlDet~~~G~~l~i~~~~~lPI~yvt~GQ~  429 (484)
T PRK06995        390 GPGLAGCILTKLDEAASLGGALDVVIRYKLPLHYVSNGQR  429 (484)
T ss_pred             cCCCCEEEEeCCCCcccchHHHHHHHHHCCCeEEEecCCC
Confidence            44444444565 2        1122222334677777764

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=98.79  E-value=3e-09  Score=88.51  Aligned_cols=45  Identities=20%  Similarity=0.331  Sum_probs=39.7

Q ss_pred             eeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEc
Q 024529           72 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS  116 (266)
Q Consensus        72 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~  116 (266)
                      .+=+.+.+++|+.++|+||||||||||+++|+|+++|+.|.|.+.
T Consensus        15 ~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ie   59 (186)
T cd01130          15 AAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIE   59 (186)
T ss_pred             HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEC
Confidence            445677889999999999999999999999999999998887653

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=98.78  E-value=7e-10  Score=105.35  Aligned_cols=148  Identities=14%  Similarity=0.182  Sum_probs=83.1

Q ss_pred             EEeCCcEEEEECCCCchHHHHHHHH--hCCCCCCceEEEEcCee----------eEEEEeccccCCCCCCCcHHHHHHHh
Q 024529           78 GIDLDSRIAMVGPNGIGKSTILKLI--AGELQPSSGTVFRSAKV----------RIAVFSQHHVDGLDLSSNPLLYMMRC  145 (266)
Q Consensus        78 ~i~~Ge~~~l~G~nGsGKSTLl~~l--~Gl~~p~~G~i~~~~~~----------~i~~~~q~~~~~~~~~~~~~~~~~~~  145 (266)
                      -+++|..+.|.|++|||||||...+  .|..++.+..+++....          .+|+-.+.....    .    .+ ..
T Consensus        17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~----g----~l-~~   87 (484)
T TIGR02655        17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSFGWDLQKLVDE----G----KL-FI   87 (484)
T ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHcCCCHHHHhhc----C----ce-EE
Confidence            4679999999999999999998876  45554333334322100          011111100000    0    00 00


Q ss_pred             CCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHH--HHHccCCCEEEEeCCCCCCCHHHHHHH---HHHHhhc
Q 024529          146 FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFA--KITFKKPHIILLDEPSNHLDLDAVEAL---IQGLVLF  220 (266)
Q Consensus       146 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lA--ral~~~p~lllLDEPt~~LD~~~~~~l---~~~l~~~  220 (266)
                      ....+......+++.+++.+ ..++....+|+|++|||.|+  .+|...|+.+          ...+..+   ++.+++.
T Consensus        88 ~~~~~~~~~~~~~~~~~l~~-~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~~~  156 (484)
T TIGR02655        88 LDASPDPEGQDVVGGFDLSA-LIERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLKQI  156 (484)
T ss_pred             EecCchhccccccccCCHHH-HHHHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHHHC
Confidence            00000001111233445432 34456678999999999999  5555555443          3344444   4555666


Q ss_pred             CCEEEEEecCHHH---------HHhhcCEEEEEe
Q 024529          221 QGGILMVSHDEHL---------ISGSVEELWVVS  245 (266)
Q Consensus       221 ~~tiiivtHd~~~---------~~~~~d~i~~l~  245 (266)
                      +.|+|++||+.+.         .+.+||.|+.|+
T Consensus       157 g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~  190 (484)
T TIGR02655       157 GVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR  190 (484)
T ss_pred             CCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence            7899999998764         255789999886

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PLN03210 Resistant to P

Probab=98.77  E-value=5.5e-08  Score=101.37  Aligned_cols=143  Identities=20%  Similarity=0.337  Sum_probs=78.8

Q ss_pred             eceEEEeCCcEEEEECCCCchHHHHHHHHhCCC-CCCceEEEEcCeeeEEEEeccc--cCCCCCCC-cHHHHHHHhCCCC
Q 024529           74 NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL-QPSSGTVFRSAKVRIAVFSQHH--VDGLDLSS-NPLLYMMRCFPGV  149 (266)
Q Consensus        74 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~~~~~i~~~~q~~--~~~~~~~~-~~~~~~~~~~~~~  149 (266)
                      =+++..+.+++++|+|++|+|||||++.+++.+ ...+|.++++..    ++.+..  ........ .....       .
T Consensus       199 lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~----~v~~~~~~~~~~~~~~~~~~~~-------l  267 (1153)
T PLN03210        199 LLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRA----FISKSMEIYSSANPDDYNMKLH-------L  267 (1153)
T ss_pred             HHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecc----ccccchhhcccccccccchhHH-------H
Confidence            356778889999999999999999999996544 445787775431    111100  00000000 00000       0


Q ss_pred             cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEE
Q 024529          150 PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILM  226 (266)
Q Consensus       150 ~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiii  226 (266)
                      ..+.+.+++...++       .+..+ ++.++|      |..++-+|+||+-    |.......+.....   .+.+||+
T Consensus       268 ~~~~l~~il~~~~~-------~~~~~-~~~~~~------L~~krvLLVLDdv----~~~~~l~~L~~~~~~~~~GsrIIi  329 (1153)
T PLN03210        268 QRAFLSEILDKKDI-------KIYHL-GAMEER------LKHRKVLIFIDDL----DDQDVLDALAGQTQWFGSGSRIIV  329 (1153)
T ss_pred             HHHHHHHHhCCCCc-------ccCCH-HHHHHH------HhCCeEEEEEeCC----CCHHHHHHHHhhCccCCCCcEEEE
Confidence            11223333433333       12222 555555      3466778889984    33322222222222   2457999


Q ss_pred             EecCHHHHHhh-cCEEEEEe
Q 024529          227 VSHDEHLISGS-VEELWVVS  245 (266)
Q Consensus       227 vtHd~~~~~~~-~d~i~~l~  245 (266)
                      +|||...+... +++++.+.
T Consensus       330 TTrd~~vl~~~~~~~~~~v~  349 (1153)
T PLN03210        330 ITKDKHFLRAHGIDHIYEVC  349 (1153)
T ss_pred             EeCcHHHHHhcCCCeEEEec
Confidence            99999998754 68887764

syringae 6; Provisional

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=98.71  E-value=5.4e-08  Score=94.92  Aligned_cols=117  Identities=21%  Similarity=0.255  Sum_probs=70.2

Q ss_pred             CCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHH-HHHHhCCCCcHHHHHHHHH
Q 024529           81 LDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLL-YMMRCFPGVPEQKLRAHLG  159 (266)
Q Consensus        81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~  159 (266)
                      ..+.++|+||||||||||+++|.+..++..|+-....   ..++..+.. .+........ .+.........+.+...++
T Consensus       174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~---~~fv~i~~~-~l~~d~~~i~~~llg~~~~~~~~~a~~~l~  249 (615)
T TIGR02903       174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAED---APFVEVDGT-TLRWDPREVTNPLLGSVHDPIYQGARRDLA  249 (615)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCC---CCeEEEech-hccCCHHHHhHHhcCCccHHHHHHHHHHHH
Confidence            4467999999999999999999998876555311000   011111100 0000000000 0100000111223455677


Q ss_pred             hcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q 024529          160 SFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL  219 (266)
Q Consensus       160 ~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  219 (266)
                      .+|+.. .....+..+|||                +|+||| +..||+..+..+.+.+.+
T Consensus       250 ~~gl~~-~~~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~Le~  291 (615)
T TIGR02903       250 ETGVPE-PKTGLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLKVLED  291 (615)
T ss_pred             HcCCCc-hhcCchhhcCCC----------------eEEEec-cccCCHHHHHHHHHHHhh
Confidence            788864 445677899999                999999 799999999999888864

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>TIGR00767 rho transcription termination factor Rho

Probab=98.70  E-value=2.5e-08  Score=91.37  Aligned_cols=55  Identities=24%  Similarity=0.326  Sum_probs=49.6

Q ss_pred             CcEEEEeeEEEcCCCCccee-----------eceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC
Q 024529           54 PIISFSDASFGYPGGPILFK-----------NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP  108 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~-----------~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p  108 (266)
                      .-+.++||++.||+.+.+|+           |+++.|.+|+.++|+||.|||||||++.|+..+..
T Consensus       129 ~ri~Fe~LTf~YP~er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~  194 (415)
T TIGR00767       129 NRVLFENLTPLYPNERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITR  194 (415)
T ss_pred             CCeEEEEeeecCCCccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhcc
Confidence            35899999999987767887           99999999999999999999999999999987643

Members of this family differ in the specificity of RNA binding.

>PF00488 MutS_V: MutS domain V C-terminus

Probab=98.69  E-value=7.7e-07  Score=76.82  Aligned_cols=46  Identities=15%  Similarity=0.182  Sum_probs=33.2

Q ss_pred             ccCCCEEEEeCCCCCCCHHHHH----HHHHHHhh-cCCEEEEEecCHHHHH
Q 024529          190 FKKPHIILLDEPSNHLDLDAVE----ALIQGLVL-FQGGILMVSHDEHLIS  235 (266)
Q Consensus       190 ~~~p~lllLDEPt~~LD~~~~~----~l~~~l~~-~~~tiiivtHd~~~~~  235 (266)
                      +.+..++|+||+..|=++....    .+++.|.+ .+..+|++||+.++..
T Consensus       120 ~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~~  170 (235)
T PF00488_consen  120 ATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELAE  170 (235)
T ss_dssp             --TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGGG
T ss_pred             cccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhHH
Confidence            4567899999999999987543    45666766 4667999999998754

; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....

>PRK13891 conjugal transfer protein TrbE; Provisional

Probab=98.68  E-value=1.4e-07  Score=95.25  Aligned_cols=52  Identities=17%  Similarity=0.104  Sum_probs=43.3

Q ss_pred             HHHHHccCCCEEEEeCCCCCC-CHHHHHHHHHHH---hhcCCEEEEEecCHHHHHh
Q 024529          185 FAKITFKKPHIILLDEPSNHL-DLDAVEALIQGL---VLFQGGILMVSHDEHLISG  236 (266)
Q Consensus       185 lAral~~~p~lllLDEPt~~L-D~~~~~~l~~~l---~~~~~tiiivtHd~~~~~~  236 (266)
                      |++++..+|+++++|||+.+| |+.....+.+.+   ++.+++++++||+++.+..
T Consensus       680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~  735 (852)
T PRK13891        680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAAN  735 (852)
T ss_pred             HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence            577888999999999999999 687777666655   4557799999999998875

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=98.66  E-value=1.1e-07  Score=86.50  Aligned_cols=112  Identities=22%  Similarity=0.310  Sum_probs=68.2

Q ss_pred             EeCCcEEEEECCCCchHHHHHHHHhCCCC-CCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHH
Q 024529           79 IDLDSRIAMVGPNGIGKSTILKLIAGELQ-PSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAH  157 (266)
Q Consensus        79 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (266)
                      ..++..+.|.||+||||||+++.|.+.+. +..|.|...         .++..          ..   .+... ..+.  
T Consensus       119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~ti---------Edp~E----------~~---~~~~~-~~i~--  173 (343)
T TIGR01420       119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITI---------EDPIE----------YV---HRNKR-SLIN--  173 (343)
T ss_pred             hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEE---------cCChh----------hh---ccCcc-ceEE--
Confidence            45688999999999999999999998665 345555421         11110          00   00000 0000  


Q ss_pred             HHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHH
Q 024529          158 LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEH  232 (266)
Q Consensus       158 l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~  232 (266)
                      -...+..         ..+    ---+++++|-.+|+++++||+.   |+++....++.. ..|..|+.+.|-.+
T Consensus       174 q~evg~~---------~~~----~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~aa-~tGh~v~~T~Ha~~  231 (343)
T TIGR01420       174 QREVGLD---------TLS----FANALRAALREDPDVILIGEMR---DLETVELALTAA-ETGHLVFGTLHTNS  231 (343)
T ss_pred             ccccCCC---------CcC----HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHHHH-HcCCcEEEEEcCCC
Confidence            0001110         111    1225778999999999999997   888877666643 44678899999743

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>PRK07594 type III secretion system ATPase SsaN; Validated

Probab=98.65  E-value=3.4e-08  Score=91.78  Aligned_cols=61  Identities=16%  Similarity=0.246  Sum_probs=53.5

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEE
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR  115 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~  115 (266)
                      +.++.+.++..|..+..+++++ |.+.+|++++|+|+||+|||||+++|+|...++.|.+..
T Consensus       128 ~~~~r~~v~~~l~tGi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~  188 (433)
T PRK07594        128 PAMVRQPITQPLMTGIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVL  188 (433)
T ss_pred             CceeccCHhheeCCCceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEE
Confidence            3577788888886566789999 999999999999999999999999999999998876643

>TIGR00152 dephospho-CoA kinase

Probab=98.63  E-value=3.4e-08  Score=82.20  Aligned_cols=129  Identities=19%  Similarity=0.185  Sum_probs=87.9

Q ss_pred             EEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGV  163 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l  163 (266)
                      +++|+|..||||||+.+.+.-..    |-..                 ++. ......+..    ....-..++.+.||-
T Consensus         1 ~i~itG~~gsGKst~~~~l~~~~----~~~~-----------------i~~-D~~~~~~~~----~~~~~~~~i~~~fg~   54 (188)
T TIGR00152         1 IIGLTGGIGSGKSTVANYLADKY----HFPV-----------------IDA-DKIAHQVVE----KGSPAYEKIVDHFGA   54 (188)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhc----CCeE-----------------EeC-CHHHHHHHh----cCChHHHHHHHHHCH
Confidence            48999999999999999997542    1000                 011 111111111    111223345556662


Q ss_pred             CcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHH--HHhhc
Q 024529          164 TGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHL--ISGSV  238 (266)
Q Consensus       164 ~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~--~~~~~  238 (266)
                        ...+      .-|+-+|..||.++..+|+.+..+|  +.+||.....+.+.+.+.   +.+||+.+|.+..  +...|
T Consensus        55 --~i~~------~~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~  124 (188)
T TIGR00152        55 --QILN------EDGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLC  124 (188)
T ss_pred             --HHhC------CCCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhC
Confidence              2211      1388999999999999999988877  789999998888877654   3489999998855  67789


Q ss_pred             CEEEEEeCCe
Q 024529          239 EELWVVSEGK  248 (266)
Q Consensus       239 d~i~~l~~G~  248 (266)
                      |.+++++.+.
T Consensus       125 D~vv~V~~~~  134 (188)
T TIGR00152       125 DRVIVVDVSP  134 (188)
T ss_pred             CEEEEEECCH
Confidence            9999998654

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=98.62  E-value=2e-07  Score=74.46  Aligned_cols=63  Identities=14%  Similarity=0.085  Sum_probs=41.8

Q ss_pred             HHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHH-----ccCCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q 024529          153 KLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT-----FKKPHIILLDEPSNHLDLDAVEALIQGLVL  219 (266)
Q Consensus       153 ~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral-----~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  219 (266)
                      ++...+..++..-.....+...+|+++.++.......     ...++++    |+|++|..+..++.+.+.+
T Consensus       101 ~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~  168 (170)
T cd01876         101 EMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEK  168 (170)
T ss_pred             HHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHH
Confidence            3455666665432222334567889988877655542     3455655    9999999999999888765

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=98.62  E-value=4.8e-08  Score=66.21  Aligned_cols=38  Identities=34%  Similarity=0.485  Sum_probs=30.2

Q ss_pred             eeeceEEEeC-CcEEEEECCCCchHHHHHHHHhCCCCCC
Q 024529           72 FKNLNFGIDL-DSRIAMVGPNGIGKSTILKLIAGELQPS  109 (266)
Q Consensus        72 l~~vsl~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~  109 (266)
                      +++-++++.+ |+++.|+|||||||||||.+|.=++-+.
T Consensus        12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~   50 (62)
T PF13555_consen   12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGN   50 (62)
T ss_pred             cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence            4556777775 5699999999999999999987655443

>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein

Probab=98.59  E-value=9.7e-08  Score=85.86  Aligned_cols=54  Identities=22%  Similarity=0.342  Sum_probs=45.9

Q ss_pred             eeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEE
Q 024529           60 DASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF  114 (266)
Q Consensus        60 ~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~  114 (266)
                      .++..|..+..+++++ |.+.+|++++|+|+||+|||||+++|+|...|+.|.+.
T Consensus        48 ~~~~~l~tGi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~  101 (326)
T cd01136          48 PIDEVLPTGVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIA  101 (326)
T ss_pred             cceeEcCCCcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEE
Confidence            3444554456689999 99999999999999999999999999999999877654

This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.

>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A

Probab=98.57  E-value=1.1e-07  Score=69.86  Aligned_cols=50  Identities=32%  Similarity=0.438  Sum_probs=37.8

Q ss_pred             CCCCCCChHHHHH-HHHHHHH------cc------CCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q 024529          170 QPMYTLSGGQKSR-VAFAKIT------FK------KPHIILLDEPSNHLDLDAVEALIQGLVL  219 (266)
Q Consensus       170 ~~~~~LSgGqkqR-v~lAral------~~------~p~lllLDEPt~~LD~~~~~~l~~~l~~  219 (266)
                      ++.+.+||||+|. +.+|.++      ..      .|.+++|||||++||+..+..+++.+++
T Consensus        28 ~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~   90 (90)
T PF13558_consen   28 RSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ   90 (90)
T ss_dssp             EEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred             ccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence            5678999999954 3333332      22      3799999999999999999999988763

>PRK09862 putative ATP-dependent protease; Provisional

Probab=98.54  E-value=7.1e-08  Score=91.47  Aligned_cols=59  Identities=22%  Similarity=0.202  Sum_probs=52.7

Q ss_pred             EEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcC
Q 024529           58 FSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA  117 (266)
Q Consensus        58 ~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~  117 (266)
                      +.|++..| +...+++++++.+..|+.++|+||||||||||++.|.|+++|.+|++....
T Consensus       187 ~~d~~~v~-Gq~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~  245 (506)
T PRK09862        187 QHDLSDVI-GQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALES  245 (506)
T ss_pred             ccCeEEEE-CcHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEec
Confidence            45888888 455688999999999999999999999999999999999999999887554

>PRK13898 type IV secretion system ATPase VirB4; Provisional

Probab=98.54  E-value=3.6e-06  Score=84.82  Aligned_cols=42  Identities=21%  Similarity=0.450  Sum_probs=36.0

Q ss_pred             eceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEE
Q 024529           74 NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR  115 (266)
Q Consensus        74 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~  115 (266)
                      -+||.+..+..++|+|++|||||||++.|++......+.|.+
T Consensus       438 ~~n~~~~~~~~~~i~G~tGsGKS~l~~~l~~~~~~~~~~i~~  479 (800)
T PRK13898        438 YFNFHVRDVGHTLIIGPTGAGKTVLMNFLCAQAMKFSPRMFF  479 (800)
T ss_pred             EEEEEEcCCCEEEEECCCCCcHHHHHHHHHhhcccCCCeEEE
Confidence            357788888899999999999999999999987777777754

>TIGR01070 mutS1 DNA mismatch repair protein MutS

Probab=98.53  E-value=4.4e-07  Score=91.28  Aligned_cols=130  Identities=21%  Similarity=0.177  Sum_probs=71.9

Q ss_pred             ceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCC-CCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCC
Q 024529           71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL-QPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGV  149 (266)
Q Consensus        71 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~  149 (266)
                      +=+|+++. ....++.|+|||.+||||+||.++=.. -...|.          |+|-... .+.    .           
T Consensus       582 VpNdi~l~-~~~~~~iITGPNmgGKSt~lrqvali~imAq~G~----------~VPA~~a-~i~----~-----------  634 (840)
T TIGR01070       582 VPNDLEMA-HNRRMLLITGPNMGGKSTYMRQTALIALLAQIGS----------FVPAESA-ELP----L-----------  634 (840)
T ss_pred             EeeeeecC-CCccEEEEECCCCCCchHHHHHHHHHHHHHhcCC----------Cccchhe-Eec----c-----------
Confidence            33555554 334589999999999999999885221 011111          1111000 000    0           


Q ss_pred             cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHH--ccCCCEEEEeCC---CCCCCHHH-HHHHHHHHhh-cCC
Q 024529          150 PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT--FKKPHIILLDEP---SNHLDLDA-VEALIQGLVL-FQG  222 (266)
Q Consensus       150 ~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral--~~~p~lllLDEP---t~~LD~~~-~~~l~~~l~~-~~~  222 (266)
                          +..++.++|-.+.+.    ..+|.=+.....+|..|  +.++.++|+||+   |+.+|-.+ ...+++.|.+ .+.
T Consensus       635 ----~D~Iftrig~~d~i~----~g~STF~~Em~e~a~IL~~at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~  706 (840)
T TIGR01070       635 ----FDRIFTRIGASDDLA----SGRSTFMVEMTEAANILHNATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRA  706 (840)
T ss_pred             ----ccEEEEecCcccchh----cCcchHHHHHHHHHHHHhhCCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCC
Confidence                001122333332221    23333233333344443  578999999999   56666555 4457788877 566


Q ss_pred             EEEEEecCHHHHH
Q 024529          223 GILMVSHDEHLIS  235 (266)
Q Consensus       223 tiiivtHd~~~~~  235 (266)
                      .++++||..++..
T Consensus       707 ~~~~~TH~~eL~~  719 (840)
T TIGR01070       707 KTLFATHYFELTA  719 (840)
T ss_pred             EEEEEcCchHHHH
Confidence            7999999987654

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=98.53  E-value=8e-08  Score=89.39  Aligned_cols=43  Identities=26%  Similarity=0.402  Sum_probs=39.2

Q ss_pred             CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCce
Q 024529           68 GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG  111 (266)
Q Consensus        68 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G  111 (266)
                      +..+++++ |++.+|++++|+|+||||||||+++|+|+.+++.+
T Consensus       142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~  184 (434)
T PRK07196        142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVV  184 (434)
T ss_pred             ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeE
Confidence            34589999 99999999999999999999999999999988743

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.49  E-value=1.5e-06  Score=67.47  Aligned_cols=106  Identities=22%  Similarity=0.337  Sum_probs=62.9

Q ss_pred             CCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHh
Q 024529           81 LDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGS  160 (266)
Q Consensus        81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  160 (266)
                      .+..+.|+||.|+|||||++.++.........+.        ++.....     . .....             ......
T Consensus        18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~--------~~~~~~~-----~-~~~~~-------------~~~~~~   70 (151)
T cd00009          18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFL--------YLNASDL-----L-EGLVV-------------AELFGH   70 (151)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeE--------EEehhhh-----h-hhhHH-------------HHHhhh
Confidence            5778999999999999999999987653222221        1111000     0 00000             000000


Q ss_pred             cCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--------CCEEEEEecCHH
Q 024529          161 FGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--------QGGILMVSHDEH  232 (266)
Q Consensus       161 ~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--------~~tiiivtHd~~  232 (266)
                      .                  .+......+...++.++++||.-.. ++.....+.+.+...        +..+|+++++..
T Consensus        71 ~------------------~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~  131 (151)
T cd00009          71 F------------------LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL  131 (151)
T ss_pred             h------------------hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence            0                  5556666777889999999998654 444555555555432        346888888654

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=98.48  E-value=1e-06  Score=73.11  Aligned_cols=63  Identities=14%  Similarity=0.208  Sum_probs=43.5

Q ss_pred             HHHHHHHhcCCCcccccCCCCCCChHHHHHHH--HHHHHcc-CCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q 024529          153 KLRAHLGSFGVTGNLALQPMYTLSGGQKSRVA--FAKITFK-KPHIILLDEPSNHLDLDAVEALIQGLVL  219 (266)
Q Consensus       153 ~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~--lAral~~-~p~lllLDEPt~~LD~~~~~~l~~~l~~  219 (266)
                      ++.+.++..++.-.....++..+|+|+++++.  +++.+-. +++++    |+|++|..+.+++.+.+.+
T Consensus       126 ~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~  191 (196)
T PRK00454        126 QMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAK  191 (196)
T ss_pred             HHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHH
Confidence            34555666665423333466789999999977  5565543 34443    9999999999998888765

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=98.47  E-value=3.6e-08  Score=84.42  Aligned_cols=26  Identities=31%  Similarity=0.382  Sum_probs=23.3

Q ss_pred             EEeCCcEEEEECCCCchHHHHHHHHh
Q 024529           78 GIDLDSRIAMVGPNGIGKSTILKLIA  103 (266)
Q Consensus        78 ~i~~Ge~~~l~G~nGsGKSTLl~~l~  103 (266)
                      -+++|+.++|.|++|||||||...++
T Consensus        16 Gi~~G~~~~i~G~~G~GKT~l~~~~~   41 (229)
T TIGR03881        16 GIPRGFFVAVTGEPGTGKTIFCLHFA   41 (229)
T ss_pred             CCcCCeEEEEECCCCCChHHHHHHHH
Confidence            47899999999999999999988654

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>PRK08149 ATP synthase SpaL; Validated

Probab=98.46  E-value=2.7e-07  Score=85.77  Aligned_cols=48  Identities=15%  Similarity=0.356  Sum_probs=41.9

Q ss_pred             CCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCc---eEEEE
Q 024529           67 GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSS---GTVFR  115 (266)
Q Consensus        67 ~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~  115 (266)
                      .+..+++++ +++.+|++++|+|+||+|||||+++|++...++.   |.|..
T Consensus       137 tGi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~  187 (428)
T PRK08149        137 TGVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGE  187 (428)
T ss_pred             CCcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEee
Confidence            345689999 9999999999999999999999999999988875   55543

>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase

Probab=98.44  E-value=2.4e-07  Score=86.38  Aligned_cols=53  Identities=25%  Similarity=0.342  Sum_probs=45.3

Q ss_pred             eEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEE
Q 024529           61 ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF  114 (266)
Q Consensus        61 l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~  114 (266)
                      ++..+..+..+++++ |.+.+|++++|+|+||+|||||+++|+|...|+.|.+.
T Consensus       125 i~~~l~tG~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~  177 (422)
T TIGR02546       125 IDQPLPTGVRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIA  177 (422)
T ss_pred             cccccCCCceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEE
Confidence            333443455689999 99999999999999999999999999999999887764

>PRK09099 type III secretion system ATPase; Provisional

Probab=98.41  E-value=3.6e-07  Score=85.27  Aligned_cols=49  Identities=22%  Similarity=0.384  Sum_probs=43.4

Q ss_pred             CCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEc
Q 024529           67 GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS  116 (266)
Q Consensus        67 ~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~  116 (266)
                      .+..+++++ |.+.+|++++|+|+||+|||||+++|++...++.|.|...
T Consensus       149 TGi~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~i  197 (441)
T PRK09099        149 TGVRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALI  197 (441)
T ss_pred             CCceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEE
Confidence            345689999 9999999999999999999999999999999988876543

>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI

Probab=98.41  E-value=3.6e-07  Score=84.79  Aligned_cols=58  Identities=19%  Similarity=0.241  Sum_probs=47.9

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEE
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV  113 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i  113 (266)
                      .++-..++..|..+..+++.+ |.+.+|++++|+|+||+|||||+++|++...|+.+.+
T Consensus       111 ~~~R~~~~~~~~tGi~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~~~~~vi  168 (411)
T TIGR03496       111 PLKRAPIDEPLDVGVRAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTEADVVVV  168 (411)
T ss_pred             HHhccCcceEeeeeEEeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCCCCEEEE
Confidence            345555666665455688888 9999999999999999999999999999999886654

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PRK00300 gmk guanylate kinase; Provisional

Probab=98.40  E-value=2e-07  Score=78.35  Aligned_cols=28  Identities=32%  Similarity=0.456  Sum_probs=26.2

Q ss_pred             eCCcEEEEECCCCchHHHHHHHHhCCCC
Q 024529           80 DLDSRIAMVGPNGIGKSTILKLIAGELQ  107 (266)
Q Consensus        80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~  107 (266)
                      ++|++++|+||+|||||||+++|++.++
T Consensus         3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~   30 (205)
T PRK00300          3 RRGLLIVLSGPSGAGKSTLVKALLERDP   30 (205)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            5899999999999999999999999874

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.40  E-value=2e-06  Score=78.73  Aligned_cols=37  Identities=22%  Similarity=0.389  Sum_probs=33.3

Q ss_pred             cceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCC
Q 024529           70 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        70 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .++++.++.++.|.+++++||||+||||++..|++.+
T Consensus       125 ~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~  161 (374)
T PRK14722        125 PVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARC  161 (374)
T ss_pred             hhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            3567788899999999999999999999999999865

>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI

Probab=98.39  E-value=3.7e-07  Score=84.79  Aligned_cols=59  Identities=17%  Similarity=0.222  Sum_probs=47.1

Q ss_pred             EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEE
Q 024529           56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR  115 (266)
Q Consensus        56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~  115 (266)
                      ++-..++.-+..+..+++ .+|.+.+|++++|+|+||+|||||+++|++..+|+.|.|..
T Consensus       115 ~~R~~i~~~l~tGi~aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~  173 (418)
T TIGR03498       115 MSRARVGEPLDTGVRVID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADVVVIAL  173 (418)
T ss_pred             hhccCcccccCCccEEEe-eeccccCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEE
Confidence            334444544544545665 69999999999999999999999999999999999887653

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases

Probab=98.39  E-value=7.4e-06  Score=71.82  Aligned_cols=36  Identities=28%  Similarity=0.459  Sum_probs=31.1

Q ss_pred             ceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCC
Q 024529           71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        71 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .|+.+.--+.+|+++.|.|++|+|||||+..++-..
T Consensus        19 ~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~   54 (271)
T cd01122          19 VLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDL   54 (271)
T ss_pred             eeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            577777789999999999999999999998876543

Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.38  E-value=2.6e-07  Score=76.72  Aligned_cols=28  Identities=29%  Similarity=0.526  Sum_probs=25.8

Q ss_pred             CCcEEEEECCCCchHHHHHHHHhCCCCC
Q 024529           81 LDSRIAMVGPNGIGKSTILKLIAGELQP  108 (266)
Q Consensus        81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p  108 (266)
                      .|++++|+||||||||||+++|++...|
T Consensus         1 ~g~~i~l~G~sGsGKsTl~~~l~~~~~~   28 (186)
T PRK10078          1 MGKLIWLMGPSGSGKDSLLAALRQREQT   28 (186)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccCCC
Confidence            3789999999999999999999998765

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=98.38  E-value=2.4e-07  Score=76.46  Aligned_cols=28  Identities=29%  Similarity=0.325  Sum_probs=26.6

Q ss_pred             CCcEEEEECCCCchHHHHHHHHhCCCCC
Q 024529           81 LDSRIAMVGPNGIGKSTILKLIAGELQP  108 (266)
Q Consensus        81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p  108 (266)
                      +|++++|+|+||||||||+++|+|++.+
T Consensus         2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~   29 (176)
T PRK09825          2 AGESYILMGVSGSGKSLIGSKIAALFSA   29 (176)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            5999999999999999999999999876

>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI

Probab=98.38  E-value=4.5e-07  Score=84.17  Aligned_cols=53  Identities=23%  Similarity=0.324  Sum_probs=45.2

Q ss_pred             eEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEE
Q 024529           61 ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF  114 (266)
Q Consensus        61 l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~  114 (266)
                      ++..|..+..+++++ |.+.+|++++|+|+||+|||||+++|++..+++.|.|.
T Consensus       117 ~~~~~~tGi~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~  169 (413)
T TIGR03497       117 IRDPLETGIKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIA  169 (413)
T ss_pred             hhhhccccceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEE
Confidence            334454455689999 99999999999999999999999999999999888664

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PRK06315 type III secretion system ATPase; Provisional

Probab=98.37  E-value=6.6e-07  Score=83.49  Aligned_cols=46  Identities=20%  Similarity=0.347  Sum_probs=38.7

Q ss_pred             CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC-CceEEEE
Q 024529           69 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-SSGTVFR  115 (266)
Q Consensus        69 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~  115 (266)
                      ..+++++ |.+.+|++++|+|+||||||||+++|+|+.++ +.|.|..
T Consensus       152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~l  198 (442)
T PRK06315        152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIAL  198 (442)
T ss_pred             EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEE
Confidence            3478887 99999999999999999999999999998854 3355543

>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=98.37  E-value=2.9e-06  Score=78.19  Aligned_cols=167  Identities=15%  Similarity=0.172  Sum_probs=98.2

Q ss_pred             eEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHH-hCCCCCCceEEEEcCeeeEEEEeccc----cCCCCCC
Q 024529           61 ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLI-AGELQPSSGTVFRSAKVRIAVFSQHH----VDGLDLS  135 (266)
Q Consensus        61 l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l-~Gl~~p~~G~i~~~~~~~i~~~~q~~----~~~~~~~  135 (266)
                      +++..+++.. +.  =+-|++| ++.|+|.+=-||||||++| .|.|.---|    +|+..+...+.-.    .++-.+.
T Consensus       227 ve~~LP~~g~-v~--GMGIp~G-vTlIvGGGyHGKSTLL~Ale~GVYnHipG----DGRE~VVT~~~avkirAEDGR~V~  298 (448)
T PF09818_consen  227 VEIELPNGGT-VT--GMGIPKG-VTLIVGGGYHGKSTLLEALERGVYNHIPG----DGREFVVTDPDAVKIRAEDGRSVE  298 (448)
T ss_pred             EEEECCCCCE-EE--EEeeCCc-EEEEECCCCccHHHHHHHHHhcccCCCCC----CCceEEEECCCceEEEecCCceEe
Confidence            5666654332 23  3678999 9999999999999999999 577653222    1221111000000    0111111


Q ss_pred             CcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH
Q 024529          136 SNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ  215 (266)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~  215 (266)
                      ...+..+....+             .|.+.  .+-.-.+=||-.-|=..|..||=..+++||+||=|++--..-+...++
T Consensus       299 ~vDISpFI~~LP-------------~g~dT--~~FsT~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq  363 (448)
T PF09818_consen  299 GVDISPFINNLP-------------GGKDT--TCFSTENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQ  363 (448)
T ss_pred             CccchHHHhhCC-------------CCCCC--CcccccCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHH
Confidence            100111111111             12211  122345789999999999999999999999999999876543222222


Q ss_pred             -------------------HHhhcCCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529          216 -------------------GLVLFQGGILMVSHDEHLISGSVEELWVVSEGKAT  250 (266)
Q Consensus       216 -------------------~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~  250 (266)
                                         ...+.+.+.|+|+--......+||+|+.|++-+..
T Consensus       364 ~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsgdy~~vAD~Vi~Md~Y~~~  417 (448)
T PF09818_consen  364 ALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSGDYFDVADRVIMMDEYRPK  417 (448)
T ss_pred             HhhccCCCCcchHHHHHHHHHHHcCceEEEEeccchhhHhhCCEEEEecCccch
Confidence                               22344666666666666666689999999987653

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	266
2iwh_A	986	Structure Of Yeast Elongation Factor 3 In Complex W		6e-17
2iwh_A	986	Structure Of Yeast Elongation Factor 3 In Complex W		7e-16
2bbs_A	290	Human Deltaf508 Nbd1 With Three Solubilizing Mutati		1e-16
1xmi_A	291	Crystal Structure Of Human F508a Nbd1 Domain With A		1e-16
2iw3_A	986	Elongation Factor 3 In Complex With Adp Length = 98		3e-16
2ix8_A	976	Model For Eef3 Bound To An 80s Ribosome Length = 97		3e-16
2bbt_A	290	Human Deltaf508 Nbd1 With Two Solublizing Mutations		4e-16
2pzf_A	228	Minimal Human Cftr First Nucleotide Binding Domain		5e-16
2pzg_A	241	Minimal Human Cftr First Nucleotide Binding Domain		9e-16
2pze_A	229	Minimal Human Cftr First Nucleotide Binding Domain		1e-15
1xf9_A	283	Structure Of Nbd1 From Murine Cftr- F508s Mutant Le		4e-14
1xmj_A	290	Crystal Structure Of Human Deltaf508 Human Nbd1 Dom		4e-14
1xfa_A	283	Structure Of Nbd1 From Murine Cftr- F508r Mutant Le		5e-14
3si7_A	285	The Crystal Structure Of The Nbd1 Domain Of The Mou		5e-14
1q3h_A	286	Mouse Cftr Nbd1 With Amp.Pnp Length = 286		8e-14
1r0z_A	286	Phosphorylated Cystic Fibrosis Transmembrane Conduc		8e-14
3gfo_A	275	Structure Of Cbio1 From Clostridium Perfringens: Pa		9e-14
2bbo_A	291	Human Nbd1 With Phe508 Length = 291		9e-14
1z47_A	355	Structure Of The Atpase Subunit Cysa Of The Putativ		1e-12
2it1_A	362	Structure Of Ph0203 Protein From Pyrococcus Horikos		3e-11
1oxs_C	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		1e-10
3g5u_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		2e-10
3g60_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		2e-10
1jj7_A	260	Crystal Structure Of The C-Terminal Atpase Domain O		3e-10
1oxx_K	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		4e-10
4ayt_A	595	Structure Of The Human Mitochondrial Abc Transporte		5e-10
4ayw_A	619	Structure Of The Human Mitochondrial Abc Transporte		6e-10
2ixf_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		7e-10
2ixe_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		1e-09
4f4c_A	1321	The Crystal Structure Of The Multi-Drug Transporter		1e-09
1g29_1	372	Malk Length = 372		2e-09
3j15_B	593	Model Of Ribosome-Bound Archaeal Pelota And Abce1 L		2e-09
3nh6_A	306	Nucleotide Binding Domain Of Human Abcb6 (Apo Struc		2e-09
3bk7_A	607	Structure Of The Complete Abce1RNAASE-L Inhibitor P		2e-09
1f3o_A	235	Crystal Structure Of Mj0796 Atp-Binding Cassette Le		3e-09
1l2t_A	235	Dimeric Structure Of Mj0796, A Bacterial Abc Transp		3e-09
2yyz_A	359	Crystal Structure Of Sugar Abc Transporter, Atp-Bin		4e-09
2yz2_A	266	Crystal Structure Of The Abc Transporter In The Cob		6e-09
4hlu_A	268	Structure Of The Ecfa-a' Heterodimer Bound To Adp L		7e-09
3tif_A	235	Dimeric Structure Of A Post-Hydrolysis State Of The		7e-09
4hlu_D	268	Structure Of The Ecfa-a' Heterodimer Bound To Adp L		7e-09
4g1u_C	266	X-Ray Structure Of The Bacterial Heme Transporter H		1e-08
2d62_A	375	Crystal Structure Of Multiple Sugar Binding Transpo		1e-08
2pmk_A	243	Crystal Structures Of An Isolated Abc-Atpase In Com		2e-08
1mt0_A	241	Atp-Binding Domain Of Haemolysin B From Escherichia		3e-08
2ff7_A	247	The Abc-Atpase Of The Abc-Transporter Hlyb In The A		3e-08
2nq2_C	253	An Inward-Facing Conformation Of A Putative Metal-C		3e-08
2ixg_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		3e-08
1yqt_A	538	Rnase-L Inhibitor Length = 538		3e-08
3b5j_A	243	Crystal Structures Of The S504a Mutant Of An Isolat		4e-08
3b5w_A	582	Crystal Structure Of Eschericia Coli Msba Length =		5e-08
3d31_A	348	Modbc From Methanosarcina Acetivorans Length = 348		5e-08
1xef_A	241	Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI		5e-08
1mv5_A	243	Crystal Structure Of Lmra Atp-Binding Domain Length		5e-08
2ffa_A	247	Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr		5e-08
2pcj_A	224	Crystal Structure Of Abc Transporter (Aq_297) From		6e-08
2ffb_A	247	The Crystal Structure Of The Hlyb-Nbd E631q Mutant		7e-08
2ghi_A	260	Crystal Structure Of Plasmodium Yoelii Multidrug Re		7e-08
3b5y_A	582	Crystal Structure Of Msba From Salmonella Typhimuri		2e-07
1q12_A	381	Crystal Structure Of The Atp-bound E. Coli Malk Len		3e-07
2pjz_A	263	The Crystal Structure Of Putative Cobalt Transport		3e-07
1q1b_A	381	Crystal Structure Of E. Coli Malk In The Nucleotide		3e-07
2onk_A	240	Abc Transporter Modbc In Complex With Its Binding P		4e-07
1v43_A	372	Crystal Structure Of Atpase Subunit Of Abc Sugar Tr		7e-07
1vci_A	373	Crystal Structure Of The Atp-binding Cassette Of Mu		7e-07
2r6g_A	381	The Crystal Structure Of The E. Coli Maltose Transp		7e-07
3b5x_A	582	Crystal Structure Of Msba From Vibrio Cholerae Leng		9e-07
1sgw_A	214	Putative Abc Transporter (Atp-Binding Protein) From		6e-06
3fvq_A	359	Crystal Structure Of The Nucleotide Binding Domain		1e-05
3qf4_A	587	Crystal Structure Of A Heterodimeric Abc Transporte		1e-05
2hyd_A	578	Multidrug Abc Transporter Sav1866 Length = 578		2e-05
4fwi_B	334	Crystal Structure Of The Nucleotide-binding Domain		2e-05
3j16_B	608	Models Of Ribosome-Bound Dom34p And Rli1p And Their		2e-05
3ozx_A	538	Crystal Structure Of Abce1 Of Sulfolubus Solfataric		4e-05
3dhw_C	343	Crystal Structure Of Methionine Importer Metni Leng		5e-05
1l7v_C	249	Bacterial Abc Transporter Involved In B12 Uptake Le		6e-05
2qi9_C	249	Abc-Transporter Btucd In Complex With Its Periplasm		9e-05
2cbz_A	237	Structure Of The Human Multidrug Resistance Protein		9e-05
4dbl_C	249	Crystal Structure Of E159q Mutant Of Btucdf Length		9e-05
3tuj_C	366	Inward Facing Conformations Of The Metni Methionine		1e-04
3tui_C	366	Inward Facing Conformations Of The Metni Methionine		1e-04
3gd7_A	390	Crystal Structure Of Human Nbd2 Complexed With N6-		1e-04
2ihy_A	279	Structure Of The Staphylococcus Aureus Putative Atp		1e-04
1vpl_A	256	Crystal Structure Of Abc Transporter Atp-binding Pr		5e-04
3qf4_B	598	Crystal Structure Of A Heterodimeric Abc Transporte		5e-04
2d2e_A	250	Crystal Structure Of Atypical Cytoplasmic Abc-Atpas		5e-04
3c41_J	242	Abc Protein Artp In Complex With Amp-PnpMG2+ Length		8e-04
2olj_A	263	Abc Protein Artp In Complex With AdpMG2+ Length = 2		8e-04
4fi3_C	249	Structure Of Vitamin B12 Transporter Btucd-F In A N		9e-04

>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986

Iteration: 1
 Score = 84.3 bits (207), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 92/202 (45%), Gaps = 10/202 (4%)
Query: 62  SFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV--FRSAKV 119
           S  Y G  IL       +    R  + GPNG GKST+++ IA      +G V  F + + 
Sbjct: 442 SLAY-GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIA------NGQVDGFPTQEE 494
Query: 120 RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQ 179
              V+ +H +DG    ++ L ++     G  E  ++  L  FG T  +   P+  LSGG 
Sbjct: 495 CRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEA-IKDKLIEFGFTDEMIAMPISALSGGW 553
Query: 180 KSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVE 239
           K ++A A+   +   I+LLDEP+NHLD   V  L+  L       + +SHD   +    E
Sbjct: 554 KMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCE 613
Query: 240 ELWVVSEGKATPFHGTFHDYKK 261
            +      K   + G F ++ K
Sbjct: 614 YIINYEGLKLRKYKGNFTEFVK 635

>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986

Iteration: 1
 Score = 80.9 bits (198), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 54/77 (70%)
Query: 175 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLI 234
           LSGGQK ++  A  T+++PH+I+LDEP+N+LD D++ AL + L  F+GG+++++H     
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFT 961
Query: 235 SGSVEELWVVSEGKATP 251
               EE+W V +G+ TP
Sbjct: 962 KNLTEEVWAVKDGRMTP 978

>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 116/226 (51%), Gaps = 29/226 (12%)
Query: 52  GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 111
           G   +SFS+  F   G P+L K++NF I+    +A+ G  G GK+++L +I GEL+PS G
Sbjct: 37  GDDSLSFSN--FSLLGTPVL-KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG 93
Query: 112 TVFRSAKVRIAVFSQH----------HVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSF 161
            +  S   RI+  SQ+          ++ G+        Y  R    +   +L   +  F
Sbjct: 94  KIKHSG--RISFCSQNSWIMPGTIKENIIGVSYDE----YRYRSV--IKACQLEEDISKF 145
Query: 162 GVTGNLAL-QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL----DAVEALIQG 216
               N+ L +   TLSGGQ++R++ A+  +K   + LLD P  +LD+    +  E+ +  
Sbjct: 146 AEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK 205
Query: 217 LVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM 262
           L+  +  IL+ S  EHL     +++ ++ EG ++ F+GTF + + +
Sbjct: 206 LMANKTRILVTSKMEHL--KKADKILILHEG-SSYFYGTFSELQNL 248

>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 113/225 (50%), Gaps = 26/225 (11%)
Query: 52  GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 111
           G   +SFS+  F   G P+L K++NF I+    +A+ G  G GK+++L +I GEL+PS G
Sbjct: 37  GDDSLSFSN--FSLLGTPVL-KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG 93
Query: 112 TVFRSAKVRIA---------VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFG 162
            +  S ++               ++ + G+        Y  R    +   +L   +  F 
Sbjct: 94  KIKHSGRISFCSQFSWIMPGTIKENIIAGVSYDE----YRYRSV--IKACQLEEDISKFA 147
Query: 163 VTGNLAL-QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL----DAVEALIQGL 217
              N+ L +   TLSGGQ++R++ A+  +K   + LLD P  +LD+    +  E+ +  L
Sbjct: 148 EKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL 207
Query: 218 VLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM 262
           +  +  IL+ S  EHL     +++ ++ EG ++ F+GTF + + +
Sbjct: 208 MANKTRILVTSKMEHL--KKADKILILHEG-SSYFYGTFSELQNL 249

>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986

Iteration: 1
 Score = 78.2 bits (191), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 59/202 (29%), Positives = 90/202 (44%), Gaps = 10/202 (4%)
Query: 62  SFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV--FRSAKV 119
           S  Y G  IL       +    R  + GPNG GKST+ + IA      +G V  F + + 
Sbjct: 442 SLAY-GAKILLNKTQLRLKRARRYGICGPNGCGKSTLXRAIA------NGQVDGFPTQEE 494
Query: 120 RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQ 179
              V+ +H +DG    ++ L ++     G  E  ++  L  FG T      P+  LSGG 
Sbjct: 495 CRTVYVEHDIDGTHSDTSVLDFVFESGVGTKE-AIKDKLIEFGFTDEXIAXPISALSGGW 553
Query: 180 KSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVE 239
           K ++A A+   +   I+LLDEP+NHLD   V  L+  L       + +SHD   +    E
Sbjct: 554 KXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCE 613
Query: 240 ELWVVSEGKATPFHGTFHDYKK 261
            +      K   + G F ++ K
Sbjct: 614 YIINYEGLKLRKYKGNFTEFVK 635

>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976

Iteration: 1
 Score = 77.8 bits (190), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 59/202 (29%), Positives = 90/202 (44%), Gaps = 10/202 (4%)
Query: 62  SFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV--FRSAKV 119
           S  Y G  IL       +    R  + GPNG GKST+ + IA      +G V  F + + 
Sbjct: 436 SLAY-GAKILLNKTQLRLKRARRYGICGPNGCGKSTLXRAIA------NGQVDGFPTQEE 488
Query: 120 RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQ 179
              V+ +H +DG    ++ L ++     G  E  ++  L  FG T      P+  LSGG 
Sbjct: 489 CRTVYVEHDIDGTHSDTSVLDFVFESGVGTKE-AIKDKLIEFGFTDEXIAXPISALSGGW 547
Query: 180 KSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVE 239
           K ++A A+   +   I+LLDEP+NHLD   V  L+  L       + +SHD   +    E
Sbjct: 548 KXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCE 607
Query: 240 ELWVVSEGKATPFHGTFHDYKK 261
            +      K   + G F ++ K
Sbjct: 608 YIINYEGLKLRKYKGNFTEFVK 629

>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290

Iteration: 1
 Score = 81.6 bits (200), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 112/217 (51%), Gaps = 27/217 (12%)
Query: 61  ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR 120
           ++F   G P+L K++NF I+    +A+ G  G GK+++L +I GEL+PS G +  S   R
Sbjct: 44  SNFSLLGTPVL-KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--R 100
Query: 121 IAVFSQH----------HVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL- 169
           I+  SQ+          ++ G+        Y  R    +   +L   +  F    N+ L 
Sbjct: 101 ISFCSQNSWIMPGTIKENIIGVSYDE----YRYRSV--IKACQLEEDISKFAEKDNIVLG 154
Query: 170 QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL----DAVEALIQGLVLFQGGIL 225
           +   TLSGGQ++R++ A+  +K   + LLD P  +LD+    +  E+ +  L+  +  IL
Sbjct: 155 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 214
Query: 226 MVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM 262
           + S  EHL     +++ ++ EG ++ F+GTF + + +
Sbjct: 215 VTSKMEHL--KKADKILILHEG-SSYFYGTFSELQNL 248

>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228

Iteration: 1
 Score = 81.3 bits (199), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 109/217 (50%), Gaps = 26/217 (11%)
Query: 61  ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR 120
            +F   GG  + K++NF I+    +A+ G  G GK+++L +I GEL+PS G +  S   R
Sbjct: 13  TAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--R 70
Query: 121 IAVFSQ----------HHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL- 169
           I+  SQ           ++ G+        Y  R    +   +L   +  F    N+ L 
Sbjct: 71  ISFCSQFSWIMPGTIKENIIGVSYDE----YRYRSV--IKACQLEEDISKFAEKDNIVLG 124
Query: 170 QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL----DAVEALIQGLVLFQGGIL 225
           +   TLSGGQ++R++ A+  +K   + LLD P  +LD+    +  E+ +  L+  +  IL
Sbjct: 125 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 184
Query: 226 MVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM 262
           + S  EHL     +++ ++ EG ++ F+GTF + + +
Sbjct: 185 VTSKMEHL--KKADKILILHEG-SSYFYGTFSELQNL 218

>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241

Iteration: 1
 Score = 80.5 bits (197), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 108/212 (50%), Gaps = 15/212 (7%)
Query: 61  ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR 120
            +F   GG  + K++NF I+    +A+ G  G GK+++L +I GEL+PS G +  S   R
Sbjct: 25  TAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--R 82
Query: 121 IAVFSQHHVDGLDLSSNPLLYMM-----RCFPGVPEQKLRAHLGSFGVTGNLAL-QPMYT 174
           I+  SQ            +++ +     R    +   +L   +  F    N+ L +   T
Sbjct: 83  ISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGIT 142
Query: 175 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL----DAVEALIQGLVLFQGGILMVSHD 230
           LSGGQ++R++ A+  +K   + LLD P  +LD+    +  E+ +  L+  +  IL+ S  
Sbjct: 143 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM 202
Query: 231 EHLISGSVEELWVVSEGKATPFHGTFHDYKKM 262
           EHL     +++ ++ EG ++ F+GTF + + +
Sbjct: 203 EHL--KKADKILILHEG-SSYFYGTFSELQNL 231

>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 108/212 (50%), Gaps = 15/212 (7%)
Query: 61  ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR 120
            +F   GG  + K++NF I+    +A+ G  G GK+++L +I GEL+PS G +  S   R
Sbjct: 13  TAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--R 70
Query: 121 IAVFSQHHVDGLDLSSNPLLYMM-----RCFPGVPEQKLRAHLGSFGVTGNLAL-QPMYT 174
           I+  SQ            +++ +     R    +   +L   +  F    N+ L +   T
Sbjct: 71  ISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGIT 130
Query: 175 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL----DAVEALIQGLVLFQGGILMVSHD 230
           LSGGQ++R++ A+  +K   + LLD P  +LD+    +  E+ +  L+  +  IL+ S  
Sbjct: 131 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM 190
Query: 231 EHLISGSVEELWVVSEGKATPFHGTFHDYKKM 262
           EHL     +++ ++ EG ++ F+GTF + + +
Sbjct: 191 EHL--KKADKILILHEG-SSYFYGTFSELQNL 219

>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283

Iteration: 1
 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 102/210 (48%), Gaps = 24/210 (11%)
Query: 67  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIA---- 122
           G P+L KN+N  I+    +A+ G  G GK+++L LI GEL+ S G +  S +V       
Sbjct: 50  GNPVL-KNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFS 108
Query: 123 -----VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL-QPMYTLS 176
                   ++ + G+           R    V   +L+  +  F    N  L +   TLS
Sbjct: 109 WIMPGTIKENIISGVSYDE------YRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLS 162
Query: 177 GGQKSRVAFAKITFKKPHIILLDEPSNHLDL----DAVEALIQGLVLFQGGILMVSHDEH 232
           GGQ++R++ A+  +K   + LLD P  +LD+       E+ +  L+  +  IL+ S  EH
Sbjct: 163 GGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEH 222
Query: 233 LISGSVEELWVVSEGKATPFHGTFHDYKKM 262
           L     +++ ++ +G ++ F+GTF + + +
Sbjct: 223 L--RKADKILILHQG-SSYFYGTFSELQSL 249

>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290

Iteration: 1
 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 107/211 (50%), Gaps = 27/211 (12%)
Query: 67  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQ 126
           G P+L K++NF I+    +A+ G  G GK+++L +I GEL+PS G +  S   RI+  SQ
Sbjct: 50  GTPVL-KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--RISFCSQ 106
Query: 127 ----------HHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL-QPMYTL 175
                      ++ G+        Y  R    +   +L   +  F    N+ L +   TL
Sbjct: 107 FSWIMPGTIKENIIGVSYDE----YRYRSV--IKACQLEEDISKFAEKDNIVLGEGGITL 160
Query: 176 SGGQKSRVAFAKITFKKPHIILLDEPSNHLDL----DAVEALIQGLVLFQGGILMVSHDE 231
           S GQ+++++ A+  +K   + LLD P  +LD+    +  E+ +  L+  +  IL+ S  E
Sbjct: 161 SEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKME 220
Query: 232 HLISGSVEELWVVSEGKATPFHGTFHDYKKM 262
           HL     +++ ++ EG ++ F+GTF + + +
Sbjct: 221 HL--KKADKILILHEG-SSYFYGTFSELQNL 248

>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283

Iteration: 1
 Score = 74.7 bits (182), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 102/210 (48%), Gaps = 24/210 (11%)
Query: 67  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIA---- 122
           G P+L KN+N  I+    +A+ G  G GK+++L LI GEL+ S G +  S +V       
Sbjct: 50  GNPVL-KNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFS 108
Query: 123 -----VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL-QPMYTLS 176
                   ++ + G+           R    V   +L+  +  F    N  L +   TLS
Sbjct: 109 WIMPGTIKENIIRGVSYDE------YRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLS 162
Query: 177 GGQKSRVAFAKITFKKPHIILLDEPSNHLDL----DAVEALIQGLVLFQGGILMVSHDEH 232
           GGQ++R++ A+  +K   + LLD P  +LD+       E+ +  L+  +  IL+ S  EH
Sbjct: 163 GGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEH 222
Query: 233 LISGSVEELWVVSEGKATPFHGTFHDYKKM 262
           L     +++ ++ +G ++ F+GTF + + +
Sbjct: 223 L--RKADKILILHQG-SSYFYGTFSELQSL 249

>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285

Iteration: 1
 Score = 74.7 bits (182), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 105/209 (50%), Gaps = 23/209 (11%)
Query: 67  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR-IAVFS 125
           G P+L KN+N  I+    +A+ G  G GK+++L LI GEL+ S G +  S +V   + FS
Sbjct: 50  GNPVL-KNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFS 108
Query: 126 -------QHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL-QPMYTLSG 177
                  + ++ G+           R    V   +L+  +  F    N  L +   TLSG
Sbjct: 109 WIMPGTIKENIIGVSYDE------YRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSG 162
Query: 178 GQKSRVAFAKITFKKPHIILLDEPSNHLDL----DAVEALIQGLVLFQGGILMVSHDEHL 233
           GQ++R++ A+  +K   + LLD P  +LD+       E+ +  L+  +  IL+ S  EHL
Sbjct: 163 GQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHL 222
Query: 234 ISGSVEELWVVSEGKATPFHGTFHDYKKM 262
                +++ ++ +G ++ F+GTF + + +
Sbjct: 223 --RKADKILILHQG-SSYFYGTFSELQSL 248

>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286

Iteration: 1
 Score = 73.9 bits (180), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 103/205 (50%), Gaps = 14/205 (6%)
Query: 67  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQ 126
           G P+L KN+N  I+    +A+ G  G GK+++L LI GEL+ S G +  S +V       
Sbjct: 50  GNPVL-KNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFS 108
Query: 127 HHVDGLDLSSNPLLYM----MRCFPGVPEQKLRAHLGSFGVTGNLAL-QPMYTLSGGQKS 181
             + G  +  N +  +     R    V   +L+  +  F    N  L +   TLSGGQ++
Sbjct: 109 WIMPG-TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRA 167
Query: 182 RVAFAKITFKKPHIILLDEPSNHLDL----DAVEALIQGLVLFQGGILMVSHDEHLISGS 237
           R++ A+  +K   + LLD P  +LD+       E+ +  L+  +  IL+ S  EHL    
Sbjct: 168 RISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHL--RK 225
Query: 238 VEELWVVSEGKATPFHGTFHDYKKM 262
            +++ ++ +G ++ F+GTF + + +
Sbjct: 226 ADKILILHQG-SSYFYGTFSELQSL 249

>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286

Iteration: 1
 Score = 73.9 bits (180), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 103/205 (50%), Gaps = 14/205 (6%)
Query: 67  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQ 126
           G P+L KN+N  I+    +A+ G  G GK+++L LI GEL+ S G +  S +V       
Sbjct: 50  GNPVL-KNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFS 108
Query: 127 HHVDGLDLSSNPLLYM----MRCFPGVPEQKLRAHLGSFGVTGNLAL-QPMYTLSGGQKS 181
             + G  +  N +  +     R    V   +L+  +  F    N  L +   TLSGGQ++
Sbjct: 109 WIMPG-TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRA 167
Query: 182 RVAFAKITFKKPHIILLDEPSNHLDL----DAVEALIQGLVLFQGGILMVSHDEHLISGS 237
           R++ A+  +K   + LLD P  +LD+       E+ +  L+  +  IL+ S  EHL    
Sbjct: 168 RISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHL--RK 225
Query: 238 VEELWVVSEGKATPFHGTFHDYKKM 262
            +++ ++ +G ++ F+GTF + + +
Sbjct: 226 ADKILILHQG-SSYFYGTFSELQSL 249

>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275

Iteration: 1
 Score = 73.9 bits (180), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 102/216 (47%), Gaps = 21/216 (9%)
Query: 55  IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
           I+   + ++ Y  G    K +N  I      A++G NG+GKST+ +   G L+PSSG + 
Sbjct: 7   ILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRIL 66
Query: 115 RSAK----VRIAVFSQHHVDGLDLSS--NPL----LYMMRCFPGV----PEQKLRAHL-G 159
              K     R  +       G+      N L    +Y    F  V    PE ++R  +  
Sbjct: 67  FDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDN 126
Query: 160 SFGVTG--NLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL 217
           +   TG  +L  +P + LS GQK RVA A +   +P +++LDEP+  LD   V  +++ L
Sbjct: 127 ALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLL 186
Query: 218 VLFQG----GILMVSHDEHLISGSVEELWVVSEGKA 249
           V  Q      I++ +HD  ++    + ++V+ EG+ 
Sbjct: 187 VEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRV 222

>pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291

Iteration: 1
 Score = 73.9 bits (180), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 106/208 (50%), Gaps = 20/208 (9%)
Query: 67  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQ 126
           G P+L K++NF I+    +A+ G  G GK+++L +I GEL+PS G +  S   RI+  SQ
Sbjct: 50  GTPVL-KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--RISFCSQ 106
Query: 127 HHV-------DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL-QPMYTLSGG 178
                     + +    +   Y  R    +   +L   +  F    N+ L +   TLS G
Sbjct: 107 FSWIMPGTIKENIIFGVSYDEYRYRSV--IKACQLEEDISKFAEKDNIVLGEGGITLSEG 164
Query: 179 QKSRVAFAKITFKKPHIILLDEPSNHLDL----DAVEALIQGLVLFQGGILMVSHDEHLI 234
           Q+++++ A+  +K   + LLD P  +LD+    +  E+ +  L+  +  IL+ S  EHL 
Sbjct: 165 QQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHL- 223
Query: 235 SGSVEELWVVSEGKATPFHGTFHDYKKM 262
               +++ ++ EG ++ F+GTF + + +
Sbjct: 224 -KKADKILILHEG-SSYFYGTFSELQNL 249

>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 100/226 (44%), Gaps = 16/226 (7%)
Query: 52  GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 111
           G   I F      YPGG    + ++F I     + ++GP+G GK+TIL+LIAG  +P+ G
Sbjct: 11  GSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKG 70
Query: 112 TVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPG---------VPEQKLRA---HLG 159
            V+   K    +  Q    GL   +  L   M  +           VP+ ++ A    L 
Sbjct: 71  DVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELL 130
Query: 160 SFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL-- 217
            F    + A +  + LSGGQ+ RVA A+    +P ++L DEP   +D      L   +  
Sbjct: 131 RFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQ 190
Query: 218 VLFQGGI--LMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 261
           V  + G+  + V+HD+       + + V+ EG    F      Y+K
Sbjct: 191 VHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEK 236

>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 72  FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDG 131
             N+N  I     +A++GP+G GKST+L  IAG  +P+SG ++   K    +  +    G
Sbjct: 19  LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVG 78
Query: 132 LDLSSNPLLYMMRCFPGVP-------------EQKLRAHLGSFGVTGNLALQPMYTLSGG 178
           L   +  L   M  +  +              ++K+R       +   L   P + LSGG
Sbjct: 79  LVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYP-WQLSGG 137
Query: 179 QKSRVAFAKITFKKPHIILLDEPSNHLDL---DAVEALIQGLVLFQG-GILMVSHDEHLI 234
           Q+ RVA A+   K+P ++LLDEP ++LD      V A ++ L    G   + V+HD+   
Sbjct: 138 QQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEA 197
Query: 235 SGSVEELWVVSEGK 248
               + + V+ EG+
Sbjct: 198 LAMADRIAVIREGE 211

>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 100/205 (48%), Gaps = 25/205 (12%)
Query: 67  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-----RI 121
           G  +   N+N  I+   R  ++GP+G GK+T +++IAG   PS+G ++   ++     ++
Sbjct: 16  GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKL 75
Query: 122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVP---------EQKLRAHLGSFGVTGNLALQPM 172
            V  +    G+   +  L   +  F  +          ++++R  +    V   L +  +
Sbjct: 76  IVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEE--VAKILDIHHV 133
Query: 173 YT-----LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL---DAVEALIQGLVLFQG-G 223
                  LSGGQ+ RVA A+   K P ++LLDEP ++LD    D+  AL++ +    G  
Sbjct: 134 LNHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVT 193
Query: 224 ILMVSHDEHLISGSVEELWVVSEGK 248
           +L+VSHD   I    + + V+ +GK
Sbjct: 194 LLVVSHDPADIFAIADRVGVLVKGK 218

>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 104/228 (45%), Gaps = 34/228 (14%)
Query: 56   ISFSDASFGYPGGPIL--FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
            + FS   F YP  P +   + L+  +     +A+VG +G GKST+++L+     P +G+V
Sbjct: 1031 VQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSV 1090
Query: 114  FRSAKVRIAVFSQHHVDGLD-----LSSNPLLYMMRCFPGVP----------EQKLRA-- 156
            F   K       Q +V  L      +S  P+L+       +           E+ +RA  
Sbjct: 1091 FLDGKE----IKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAK 1146
Query: 157  ------HLGSFGVTGNLALQPMYT-LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA 209
                   + S     N  +    T LSGGQK R+A A+   ++PHI+LLDE ++ LD ++
Sbjct: 1147 EANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTES 1206
Query: 210  VEALIQGLVLFQGG--ILMVSHDEHLISGSVEELWVVSEGKATPFHGT 255
             + + + L   + G   ++++H    I  +  +L VV +      HGT
Sbjct: 1207 EKVVQEALDKAREGRTCIVIAHRLSTIQNA--DLIVVIQNGKVKEHGT 1252

>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 104/228 (45%), Gaps = 34/228 (14%)
Query: 56   ISFSDASFGYPGGPIL--FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
            + FS   F YP  P +   + L+  +     +A+VG +G GKST+++L+     P +G+V
Sbjct: 1031 VQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSV 1090
Query: 114  FRSAKVRIAVFSQHHVDGLD-----LSSNPLLYMMRCFPGVP----------EQKLRA-- 156
            F   K       Q +V  L      +S  P+L+       +           E+ +RA  
Sbjct: 1091 FLDGKE----IKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAK 1146
Query: 157  ------HLGSFGVTGNLALQPMYT-LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA 209
                   + S     N  +    T LSGGQK R+A A+   ++PHI+LLDE ++ LD ++
Sbjct: 1147 EANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTES 1206
Query: 210  VEALIQGLVLFQGG--ILMVSHDEHLISGSVEELWVVSEGKATPFHGT 255
             + + + L   + G   ++++H    I  +  +L VV +      HGT
Sbjct: 1207 EKVVQEALDKAREGRTCIVIAHRLSTIQNA--DLIVVIQNGKVKEHGT 1252

>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 83/185 (44%), Gaps = 26/185 (14%)
Query: 55  IISFSDASFGYPGGP--ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGT 112
           ++ F D SF YP  P  ++ + L F +      A+VGPNG GKST+  L+    QP+ G 
Sbjct: 14  LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQ 73
Query: 113 VFRSAK-----------VRIAVFSQH-HVDGLDLSSNPLLYMMRCFPGVPEQKLRA-HLG 159
           +    K            ++A   Q   V G  L  N + Y +   P + E    A   G
Sbjct: 74  LLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQEN-IAYGLTQKPTMEEITAAAVKSG 132
Query: 160 SFGVTGNLAL-------QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA--- 209
           +      L         +    LSGGQ+  VA A+   +KP +++LD+ ++ LD ++   
Sbjct: 133 AHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQ 192
Query: 210 VEALI 214
           VE L+
Sbjct: 193 VEQLL 197

>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 99/205 (48%), Gaps = 25/205 (12%)
Query: 67  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-----RI 121
           G  +   N+N  I+   R  ++GP+G GK+T +++IAG   PS+G ++   ++     ++
Sbjct: 16  GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKL 75
Query: 122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVP---------EQKLRAHLGSFGVTGNLALQPM 172
            V  +    G+   +  L   +  F  +          ++++R  +    V   L +  +
Sbjct: 76  IVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEE--VAKILDIHHV 133
Query: 173 YT-----LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL---DAVEALIQGLVLFQG-G 223
                  LSG Q+ RVA A+   K P ++LLDEP ++LD    D+  AL++ +    G  
Sbjct: 134 LNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVT 193
Query: 224 ILMVSHDEHLISGSVEELWVVSEGK 248
           +L+VSHD   I    + + V+ +GK
Sbjct: 194 LLVVSHDPADIFAIADRVGVLVKGK 218

>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 102/238 (42%), Gaps = 58/238 (24%)
Query: 56  ISFSDASFGYPGGPI--LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
           + F +  F YP  P   +F++ +  I   S  A+VGP+G GKST+L L+     P+SGT+
Sbjct: 342 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTI 401
Query: 114 FRSA-----------KVRIAVFSQ-------------------------HHVDGLDLSSN 137
                          + +I   SQ                           +  +   +N
Sbjct: 402 SLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVAN 461
Query: 138 PLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIIL 197
            + + +R FP    Q     +G  GV           LSGGQK R+A A+   K P I+L
Sbjct: 462 AVAF-IRNFP----QGFNTVVGEKGV----------LLSGGQKQRIAIARALLKNPKILL 506
Query: 198 LDEPSNHLDLDAVEALIQGLV--LFQG-GILMVSHDEHLISGSVEELWVVSEGKATPF 252
           LDE ++ LD +  E L+Q  +  L  G  +L+++H    I  +   + V+ +GK T +
Sbjct: 507 LDEATSALDAEN-EYLVQEALDRLMDGRTVLVIAHRLSTIKNA-NMVAVLDQGKITEY 562

>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619

Iteration: 1
 Score = 61.2 bits (147), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 103/237 (43%), Gaps = 56/237 (23%)
Query: 56  ISFSDASFGYPGGPI--LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
           + F +  F YP  P   +F++ +  I   S  A+VGP+G GKST+L L+     P+SGT+
Sbjct: 373 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTI 432
Query: 114 FRSA-----------KVRIAVFSQHHV---------------DGLDLSSNPL-------- 139
                          + +I   SQ  +               D   +++  +        
Sbjct: 433 SLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVAN 492
Query: 140 -LYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILL 198
            +  +R FP    Q     +G  GV           LSGGQK R+A A+   K P I+LL
Sbjct: 493 AVAFIRNFP----QGFNTVVGEKGV----------LLSGGQKQRIAIARALLKNPKILLL 538
Query: 199 DEPSNHLDLDAVEALIQGLV--LFQG-GILMVSHDEHLISGSVEELWVVSEGKATPF 252
           DE ++ LD +  E L+Q  +  L  G  +L+++H    I  +   + V+ +GK T +
Sbjct: 539 DEATSALDAEN-EYLVQEALDRLMDGRTVLVIAHHLSTIKNA-NMVAVLDQGKITEY 593

>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271

Iteration: 1
 Score = 60.8 bits (146), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 76/181 (41%), Gaps = 37/181 (20%)
Query: 55  IISFSDASFGYPGGP--ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGT 112
           ++ F D SF YP  P   + + L F +      A+VGPNG GKST+  L+    QP+ G 
Sbjct: 16  LVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGK 75
Query: 113 VFRSAKVRIAVFSQH--HVDGLDLSSNPLL----------YMMRCFPGVPEQKLRA---- 156
           V    +  +  +  H  H     +   PLL          Y +   P + E    A    
Sbjct: 76  VLLDGEPLVQ-YDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESG 134
Query: 157 -----------HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHL 205
                      +    G TGN        LSGGQ+  VA A+   +KP +++LD+ ++ L
Sbjct: 135 AHDFISGFPQGYDTEVGETGN-------QLSGGQRQAVALARALIRKPRLLILDQATSAL 187
Query: 206 D 206
           D
Sbjct: 188 D 188

>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 75/181 (41%), Gaps = 37/181 (20%)
Query: 55  IISFSDASFGYPGGP--ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGT 112
           ++ F D SF YP  P   + + L F +      A+VGPNG GKST+  L+    QP+ G 
Sbjct: 16  LVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGK 75
Query: 113 VFRSAKVRIAVFSQH--HVDGLDLSSNPLL----------YMMRCFPGVPEQKLRA---- 156
           V    +  +  +  H  H     +   PLL          Y +   P + E    A    
Sbjct: 76  VLLDGEPLVQ-YDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESG 134
Query: 157 -----------HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHL 205
                      +    G TGN        LSGGQ+  VA A+   +KP +++LD  ++ L
Sbjct: 135 AHDFISGFPQGYDTEVGETGN-------QLSGGQRQAVALARALIRKPRLLILDNATSAL 187
Query: 206 D 206
           D
Sbjct: 188 D 188

>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 84/188 (44%), Gaps = 30/188 (15%)
Query: 56   ISFSDASFGYPGGPIL--FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
            + F +  F YP  P +   K L+F ++    +A+VGP+G GKST++ L+        G +
Sbjct: 1077 VIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEI 1136
Query: 114  F-----------RSAKVRIAVFSQ-----------HHVDGLDLSSNPLLYMMRCFPGVPE 151
            F              + +IA+ SQ           + + GLD SS  +  +         
Sbjct: 1137 FIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANI 1196
Query: 152  QKLRAHL--GSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA 209
                A L  G     G+   Q    LSGGQK R+A A+   + P I+LLDE ++ LD ++
Sbjct: 1197 HNFIAELPEGFETRVGDRGTQ----LSGGQKQRIAIARALVRNPKILLLDEATSALDTES 1252
Query: 210  VEALIQGL 217
             + + + L
Sbjct: 1253 EKVVQEAL 1260

>pdb|1G29|1 Chain 1, Malk Length = 372

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 71/143 (49%), Gaps = 28/143 (19%)
Query: 87  MVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV---------------RIAVFSQHHVDG 131
           ++GP+G GK+T L++IAG  +PS G ++   K+                IA+  Q +   
Sbjct: 34  LLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYA-- 91
Query: 132 LDLSSNPLLYMMRCFP----GVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRV 183
             L  +  +Y    FP     VP    +Q++R      G+T  L  +P   LSGGQ+ RV
Sbjct: 92  --LYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP-RELSGGQRQRV 148
Query: 184 AFAKITFKKPHIILLDEPSNHLD 206
           A  +   +KP + L+DEP ++LD
Sbjct: 149 ALGRAIVRKPQVFLMDEPLSNLD 171

>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 89/195 (45%), Gaps = 22/195 (11%)
Query: 85  IAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMR 144
           I +VGPNGIGK+T +K++AG  +P+ G V     + +A   Q+    +       +Y + 
Sbjct: 371 IGIVGPNGIGKTTFVKMLAGVEEPTEGKV--EWDLTVAYKPQY----IKAEYEGTVYEL- 423
Query: 145 CFPGVPEQKLRAHLGSFGVTGNLALQPMYT-----LSGGQKSRVAFAKITFKKPHIILLD 199
               +   KL ++     +   L +  +Y      LSGG+  RVA A    +   I LLD
Sbjct: 424 -LSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLD 482
Query: 200 EPSNHLDLD---AVEALIQGLV-LFQGGILMVSHDEHLISGSVEELWVVS-----EGKAT 250
           EPS +LD++   AV   I+ L+   +   L+V HD  +I    + L V        G+A 
Sbjct: 483 EPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRAL 542
Query: 251 PFHGTFHDYKKMLQS 265
           P  G      + L S
Sbjct: 543 PPMGMREGMNRFLAS 557

>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 96/215 (44%), Gaps = 27/215 (12%)
Query: 56  ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV-- 113
           I F +  F Y  G    ++++F +     +A+VGP+G GKSTIL+L+      SSG +  
Sbjct: 54  IEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRI 113
Query: 114 -------FRSAKVR--IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVT 164
                     A +R  I V  Q  V   D  ++ + Y  R   G  E +  A   + G+ 
Sbjct: 114 DGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRY-GRVTAGNDEVEAAAQ--AAGIH 170
Query: 165 GNLALQPM----------YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALI 214
             +   P             LSGG+K RVA A+   K P IILLDE ++ LD     A+ 
Sbjct: 171 DAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQ 230
Query: 215 QGL--VLFQGGILMVSHDEHLISGSVEELWVVSEG 247
             L  V      ++V+H    +  + +++ V+ +G
Sbjct: 231 ASLAKVCANRTTIVVAHRLSTVV-NADQILVIKDG 264

>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 89/195 (45%), Gaps = 22/195 (11%)
Query: 85  IAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMR 144
           I +VGPNGIGK+T +K++AG  +P+ G V     + +A   Q+    +       +Y + 
Sbjct: 385 IGIVGPNGIGKTTFVKMLAGVEEPTEGKV--EWDLTVAYKPQY----IKAEYEGTVYEL- 437
Query: 145 CFPGVPEQKLRAHLGSFGVTGNLALQPMYT-----LSGGQKSRVAFAKITFKKPHIILLD 199
               +   KL ++     +   L +  +Y      LSGG+  RVA A    +   I LLD
Sbjct: 438 -LSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLD 496
Query: 200 EPSNHLDLD---AVEALIQGLV-LFQGGILMVSHDEHLISGSVEELWVVS-----EGKAT 250
           EPS +LD++   AV   I+ L+   +   L+V HD  +I    + L V        G+A 
Sbjct: 497 EPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRAL 556
Query: 251 PFHGTFHDYKKMLQS 265
           P  G      + L S
Sbjct: 557 PPMGMREGMNRFLAS 571

>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 86/204 (42%), Gaps = 29/204 (14%)
Query: 56  ISFSDASFGYPGGPIL---FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGT 112
           I   + +  Y  G  +    KN+N  I     +++ GP+G GKST L +I    +P+ G 
Sbjct: 2   IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
Query: 113 VF------------RSAKVRIA----VFSQHHV----DGLDLSSNPLLYMMRCFPGVPEQ 152
           V+               K+R      VF Q ++      L+    PL++  R      E+
Sbjct: 62  VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEER 121
Query: 153 KLRA--HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAV 210
           + RA   L    +    A      LSGGQ+ RVA A+     P IIL DEP+  LD    
Sbjct: 122 RKRALECLKXAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTG 181
Query: 211 EALIQGLVLFQ----GGILMVSHD 230
           E + Q L          +++V+HD
Sbjct: 182 EKIXQLLKKLNEEDGKTVVVVTHD 205

>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 92/205 (44%), Gaps = 29/205 (14%)
Query: 55  IISFSDASFGYP-GGPILF--KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 111
           +I   + +  Y  G  I++  KN+N  I     ++++GP+G GKST+L +I    +P+ G
Sbjct: 1   MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG 60
Query: 112 TVF------------RSAKVRIA----VFSQHHV----DGLDLSSNPLLYMMRCFPGVPE 151
            V+               K+R      VF Q ++      L+    PL++  R      E
Sbjct: 61  EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEE 120
Query: 152 QKLRA--HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA 209
           ++ RA   L    +    A      LSGGQ+ RVA A+     P IIL D+P+  LD   
Sbjct: 121 RRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKT 180
Query: 210 VEALIQGLVLFQ----GGILMVSHD 230
            E ++Q L          +++V+HD
Sbjct: 181 GEKIMQLLKKLNEEDGKTVVVVTHD 205

>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 84/184 (45%), Gaps = 16/184 (8%)
Query: 85  IAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMR 144
           +A++GP+G GK+T L ++AG  +P+SG ++    +   +  ++   G+   +  L   M 
Sbjct: 32  VALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMT 91
Query: 145 CFPGVP------------EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK 192
            F  +              +K    +    +  NL  +    LSGGQ+ RVA A+   K+
Sbjct: 92  VFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQ 151
Query: 193 PHIILLDEPSNHLDLDAVEALIQGLVLFQGGI----LMVSHDEHLISGSVEELWVVSEGK 248
           P ++L DEP ++LD +    +   +   Q  +    + V+HD+         + V ++GK
Sbjct: 152 PKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGK 211
Query: 249 ATPF 252
              +
Sbjct: 212 LVQY 215

>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266

Iteration: 1
 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 99/213 (46%), Gaps = 19/213 (8%)
Query: 64  GYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR--- 120
           G P      +N++  I+    + + G  G GKST+L+++AG ++P+SG V    + +   
Sbjct: 15  GTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY 74
Query: 121 -----IAVFSQHHVDGL--DLSSNPLLYMMRCF----PGVPEQKLRAHLGSFGVTGNLAL 169
                I +  Q+  D    +   + + + ++ F      VP  K                
Sbjct: 75  EIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDR 134
Query: 170 QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQG---GILM 226
            P + LSGG+K RVA A +   +P I++LDEP   LD +    L++ +  ++     +++
Sbjct: 135 VPFF-LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVIL 193
Query: 227 VSHDEHLISGSVEELWVVSEGKATPFHGTFHDY 259
           +SHD   +   V+ + V+ +GK   F GT  ++
Sbjct: 194 ISHDIETVINHVDRVVVLEKGKKV-FDGTRMEF 225

>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268

Iteration: 1
 Score = 57.8 bits (138), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 98/212 (46%), Gaps = 17/212 (8%)
Query: 64  GYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAV 123
           G P      +N++  I+    + + G  G GKST+L+++AG ++P+SG V    + +   
Sbjct: 17  GTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY 76
Query: 124 FSQHHVDGLDLSSNPLLYMMRCFPGV------------PEQKLRAHLGSFGVT-GNLALQ 170
             + ++           +  R F  V            P   ++  +   G+   +   +
Sbjct: 77  EIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDR 136
Query: 171 PMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQG---GILMV 227
             + LSGG+K RVA A +   +P I++LDEP   LD +    L++ +  ++     ++++
Sbjct: 137 VPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILI 196
Query: 228 SHDEHLISGSVEELWVVSEGKATPFHGTFHDY 259
           SHD   +   V+ + V+ +GK   F GT  ++
Sbjct: 197 SHDIETVINHVDRVVVLEKGKKV-FDGTRMEF 227

>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235

Iteration: 1
 Score = 57.8 bits (138), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 83/185 (44%), Gaps = 26/185 (14%)
Query: 72  FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF------------RSAKV 119
            KN+N  I     ++++GP+G GKST+L +I    +P+ G V+               K+
Sbjct: 21  LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 120 RIA----VFSQHHV----DGLDLSSNPLLYMMRCFPGVPEQKLRA--HLGSFGVTGNLAL 169
           R      VF Q ++      L+    PL++  R      E++ RA   L    +    A 
Sbjct: 81  RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFAN 140
Query: 170 QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQ----GGIL 225
                LSGGQ+ RVA A+     P IIL D+P+  LD    E ++Q L          ++
Sbjct: 141 HKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVV 200
Query: 226 MVSHD 230
           +V+HD
Sbjct: 201 VVTHD 205

>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268

Iteration: 1
 Score = 57.4 bits (137), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 92/203 (45%), Gaps = 43/203 (21%)
Query: 56  ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL--------- 106
           I  +  SF Y G  +L K++N   +      +VG NG GK+T+LK++AG L         
Sbjct: 12  IELNSVSFRYNGDYVL-KDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAAAGEIFLD 70
Query: 107 ---------QPSSGTVFRS-------AKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVP 150
                    + + G VF++       A V   V     + GLD S       MR      
Sbjct: 71  GSPADPFLLRKNVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDESE------MR------ 118
Query: 151 EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAV 210
            ++++  L   G++G  A  P+  LSGGQK R+A A +  +    + LDEP + LD  + 
Sbjct: 119 -KRIKKVLELVGLSGLAAADPL-NLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQ 176
Query: 211 EALIQGLVLFQG---GILMVSHD 230
             + Q L   +    GI++V+H+
Sbjct: 177 REIFQVLESLKNEGKGIILVTHE 199

>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 91/202 (45%), Gaps = 26/202 (12%)
Query: 71  LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF------------RSAK 118
           L  +++  I     +A++GPNG GKST+L+L+ G L PS G                 A+
Sbjct: 26  LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALAR 85
Query: 119 VRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL--QPMYTLS 176
            R AV  Q+       S + ++ M R  P    Q  +A       T  LAL  +    LS
Sbjct: 86  TR-AVMRQYSELAFPFSVSEVIQMGRA-PYGGSQDRQALQQVMAQTDCLALAQRDYRVLS 143
Query: 177 GGQKSRVAFAKITFK------KPHIILLDEPSNHLDLDAVEALIQGLVLFQG----GILM 226
           GG++ RV  A++  +       P  + LDEP++ LDL   +  ++ L          +  
Sbjct: 144 GGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCC 203
Query: 227 VSHDEHLISGSVEELWVVSEGK 248
           V HD +L +   + + ++++GK
Sbjct: 204 VLHDLNLAALYADRIMLLAQGK 225

>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 74/157 (47%), Gaps = 28/157 (17%)
Query: 73  KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGT--------------VFRSAK 118
           K+L+  I     + ++GP+G GK+T L+ IAG  +P+ G               VF   K
Sbjct: 23  KDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPPK 82
Query: 119 VR-IAVFSQHHVDGLDLSSNPLLYMMRCFP----GVPEQ----KLRAHLGSFGVTGNLAL 169
            R +A   Q +     L  +  +Y    FP     VP+Q    ++R      G+T  L  
Sbjct: 83  ERDVAXVFQSYA----LYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTELLNR 138
Query: 170 QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 206
           +P   LSGGQ+ RVA  +   ++P + L DEP ++LD
Sbjct: 139 KPR-ELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLD 174

>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 99/217 (45%), Gaps = 28/217 (12%)
Query: 56  ISFSDASFGY-PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
           I+F +  F Y P  P++  N+N  I     I +VG +G GKST+ KLI     P +G V 
Sbjct: 4   ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 63
Query: 115 RSA-----------KVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGV 163
                         + ++ V  Q   D + L+ + +  +    PG+  +K+       G 
Sbjct: 64  IDGHDLALADPNWLRRQVGVVLQ---DNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 120
Query: 164 TGNLA-LQPMYT---------LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL 213
              ++ L+  Y          LSGGQ+ R+A A+     P I++ DE ++ LD ++   +
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 214 IQGLVLFQGG--ILMVSHDEHLISGSVEELWVVSEGK 248
           ++ +     G  +++++H    +  + + + V+ +GK
Sbjct: 181 MRNMHKICKGRTVIIIAHRLSTVKNA-DRIIVMEKGK 216

>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 99/217 (45%), Gaps = 28/217 (12%)
Query: 56  ISFSDASFGY-PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
           I+F +  F Y P  P++  N+N  I     I +VG +G GKST+ KLI     P +G V 
Sbjct: 2   ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 115 RSA-----------KVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGV 163
                         + ++ V  Q   D + L+ + +  +    PG+  +K+       G 
Sbjct: 62  IDGHDLALADPNWLRRQVGVVLQ---DNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 118
Query: 164 TGNLA-LQPMYT---------LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL 213
              ++ L+  Y          LSGGQ+ R+A A+     P I++ DE ++ LD ++   +
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 214 IQGLVLFQGG--ILMVSHDEHLISGSVEELWVVSEGK 248
           ++ +     G  +++++H    +  + + + V+ +GK
Sbjct: 179 MRNMHKICKGRTVIIIAHRLSTVKNA-DRIIVMEKGK 214

>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 99/217 (45%), Gaps = 28/217 (12%)
Query: 56  ISFSDASFGY-PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
           I+F +  F Y P  P++  N+N  I     I +VG +G GKST+ KLI     P +G V 
Sbjct: 8   ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 115 RSA-----------KVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGV 163
                         + ++ V  Q   D + L+ + +  +    PG+  +K+       G 
Sbjct: 68  IDGHDLALADPNWLRRQVGVVLQ---DNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 164 TGNLA-LQPMYT---------LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL 213
              ++ L+  Y          LSGGQ+ R+A A+     P I++ DE ++ LD ++   +
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 214 IQGLVLFQGG--ILMVSHDEHLISGSVEELWVVSEGK 248
           ++ +     G  +++++H    +  + + + V+ +GK
Sbjct: 185 MRNMHKICKGRTVIIIAHRLSTVKNA-DRIIVMEKGK 220

>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 74/160 (46%), Gaps = 11/160 (6%)
Query: 56  ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115
           +S  +  F Y     LF+ LNF ++    +A++G NG GKST+L L+ G  +P  G +  
Sbjct: 5   LSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI-- 62
Query: 116 SAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAH--------LGSFGVTGNL 167
                I    Q        S   ++ M R        K ++H        L    +T +L
Sbjct: 63  EVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLT-HL 121
Query: 168 ALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 207
           A +   +LSGGQ+  +  A+    +  +ILLDEP++ LDL
Sbjct: 122 AKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDL 161

>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 74/181 (40%), Gaps = 37/181 (20%)
Query: 55  IISFSDASFGYPGGP--ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGT 112
           ++ F D SF YP  P   + + L F +      A+VGPNG GKST+  L+    QP+ G 
Sbjct: 16  LVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGK 75
Query: 113 VFRSAKVRIAVFSQH--HVDGLDLSSNPLL----------YMMRCFPGVPEQKLRA---- 156
           V    +  +  +  H  H     +   PLL          Y +   P + E    A    
Sbjct: 76  VLLDGEPLVQ-YDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESG 134
Query: 157 -----------HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHL 205
                      +    G TGN        L+ GQ+  VA A+   +KP +++LD  ++ L
Sbjct: 135 AHDFISGFPQGYDTEVGETGN-------QLAVGQRQAVALARALIRKPRLLILDNATSAL 187
Query: 206 D 206
           D
Sbjct: 188 D 188

>pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 86/195 (44%), Gaps = 22/195 (11%)
Query: 85  IAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMR 144
           I +VGPNGIGK+T +K +AG  +P+ G +     + +A   Q+      + ++    +  
Sbjct: 315 IGIVGPNGIGKTTFVKXLAGVEEPTEGKI--EWDLTVAYKPQY------IKADYEGTVYE 366
Query: 145 CFPGVPEQKLRAHLGSFGVTGNLALQPMY-----TLSGGQKSRVAFAKITFKKPHIILLD 199
               +   KL ++     +   L +  +Y      LSGG+  RVA A    +   I LLD
Sbjct: 367 LLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLD 426
Query: 200 EPSNHLDLD---AVEALIQGLV-LFQGGILMVSHDEHLISGSVEELWVVS-----EGKAT 250
           EPS +LD++   AV   I+ L    +   L+V HD   I    + L V        G+A 
Sbjct: 427 EPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEHDVLXIDYVSDRLXVFEGEPGKYGRAL 486
Query: 251 PFHGTFHDYKKMLQS 265
           P  G      + L S
Sbjct: 487 PPXGXREGXNRFLAS 501

>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 98/217 (45%), Gaps = 28/217 (12%)
Query: 56  ISFSDASFGY-PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
           I+F +  F Y P  P++  N+N  I     I +VG  G GKST+ KLI     P +G V 
Sbjct: 4   ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVL 63
Query: 115 RSA-----------KVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGV 163
                         + ++ V  Q   D + L+ + +  +    PG+  +K+       G 
Sbjct: 64  IDGHDLALADPNWLRRQVGVVLQ---DNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 120
Query: 164 TGNLA-LQPMYT---------LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL 213
              ++ L+  Y          LSGGQ+ R+A A+     P I++ DE ++ LD ++   +
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 214 IQGLVLFQGG--ILMVSHDEHLISGSVEELWVVSEGK 248
           ++ +     G  +++++H    +  + + + V+ +GK
Sbjct: 181 MRNMHKICKGRTVIIIAHRLSTVKNA-DRIIVMEKGK 216

>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 98/225 (43%), Gaps = 24/225 (10%)
Query: 56  ISFSDASFGYPGGPI-LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV- 113
           + F + +F YPG  +   +N+N  I     +A+VG +G GKSTI  LI        G + 
Sbjct: 342 VEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEIL 401
Query: 114 ----------FRSAKVRIAVFSQHHVDGLDLSSNPLLYMMR---CFPGVPEQKLRAHLGS 160
                       S + ++A+ SQ+     D  +N + Y          + E    A+   
Sbjct: 402 MDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMD 461
Query: 161 FGVTGNLALQPM-----YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ 215
           F    +  L  +       LSGGQ+ R+A A+   +   I++LDE ++ LD ++  A+  
Sbjct: 462 FINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQA 521
Query: 216 GLVLFQGG--ILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHD 258
            L   Q     L+++H    I  + +E+ VV +G      GT +D
Sbjct: 522 ALDELQKNRTSLVIAHRLSTIEKA-DEIVVVEDGVIVE-RGTHND 564

>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 82/188 (43%), Gaps = 13/188 (6%)
Query: 74  NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD 133
           NL+  ++      ++GP G GK+  L+LIAG   P SG +    K    +  + H     
Sbjct: 18  NLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFV 77
Query: 134 LSSNPLLYMMRCFP----GVPEQKLRAHLGSFGVTGNLALQPMY-----TLSGGQKSRVA 184
             +  L   M        G+  +K++          +L ++ +      TLSGG++ RVA
Sbjct: 78  YQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVA 137
Query: 185 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQG----GILMVSHDEHLISGSVEE 240
            A+     P I+LLDEP + LD    E   + L +        +L ++HD+       + 
Sbjct: 138 LARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADR 197
Query: 241 LWVVSEGK 248
           + VV +GK
Sbjct: 198 IAVVMDGK 205

>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 83/184 (45%), Gaps = 25/184 (13%)
Query: 56  ISFSDASFGY-PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
           I+F +  F Y P  P++  N+N  I     I +VG +G GKST+ KLI     P +G V 
Sbjct: 2   ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 115 RSA-----------KVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGV 163
                         + ++ V  Q   D + L+ + +  +    PG+  +K+       G 
Sbjct: 62  IDGHDLALADPNWLRRQVGVVLQ---DNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 118
Query: 164 TGNLA-LQPMYT---------LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL 213
              ++ L+  Y          LSGGQ+ R+A A+     P I++ DE ++ LD ++   +
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 214 IQGL 217
           ++ +
Sbjct: 179 MRNM 182

>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 106/230 (46%), Gaps = 48/230 (20%)
Query: 55  IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV- 113
           ++S     F Y     + ++++F    +S IA  GP+G GKSTI  L+    QP++G + 
Sbjct: 1   MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 114 ----------FRSAKVRIAVFSQ--------------HHVDGLDLSSNPL-----LYMMR 144
                       + + +I   SQ              + ++G D +   L     L   R
Sbjct: 61  IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEG-DYTDEDLWQVLDLAFAR 119
Query: 145 CF-PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN 203
            F   +P+Q L   +G  GV           +SGGQ+ R+A A+   + P I++LDE + 
Sbjct: 120 SFVENMPDQ-LNTEVGERGVK----------ISGGQRQRLAIARAFLRNPKILMLDEATA 168
Query: 204 HLDLDAVEALIQGLV--LFQG-GILMVSHDEHLISGSVEELWVVSEGKAT 250
            LD ++ E+++Q  +  L +G   L+++H    I  + ++++ + +G+ T
Sbjct: 169 SLDSES-ESMVQKALDSLMKGRTTLVIAHRLSTIVDA-DKIYFIEKGQIT 216

>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 83/184 (45%), Gaps = 25/184 (13%)
Query: 56  ISFSDASFGY-PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
           I+F +  F Y P  P++  N+N  I     I +VG +G GKST+ KLI     P +G V 
Sbjct: 8   ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 115 RSA-----------KVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGV 163
                         + ++ V  Q   D + L+ + +  +    PG+  +K+       G 
Sbjct: 68  IDGHDLALADPNWLRRQVGVVLQ---DNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 164 TGNLA-LQPMYT---------LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL 213
              ++ L+  Y          LSGGQ+ R+A A+     P I++ DE ++ LD ++   +
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 214 IQGL 217
           ++ +
Sbjct: 185 MRNM 188

>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 25/186 (13%)
Query: 71  LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF---------------- 114
           + K ++  +     ++++G +G GKST+L ++     P+ G VF                
Sbjct: 19  ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 115 -RSAKVRIAVFSQHH-VDGLDLSSNPLLYMMRCFPGVPEQKLRAH--LGSFGVTGNLALQ 170
            R+ K+   VF  H+ +  L    N ++ M++      E K R    L   G+   L+ +
Sbjct: 79  LRNRKLGF-VFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRK 137
Query: 171 PMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ-GLVLFQGG--ILMV 227
           P Y LSGG++ RVA A+    +P ++  DEP+ +LD    + ++   L + +GG  I+MV
Sbjct: 138 P-YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMV 196
Query: 228 SHDEHL 233
           +H+  L
Sbjct: 197 THEREL 202

>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247

Iteration: 1
 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 99/217 (45%), Gaps = 28/217 (12%)
Query: 56  ISFSDASFGY-PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
           I+F +  F Y P  P++  N+N  I     I +VG +G GKST+ KLI     P +G V 
Sbjct: 8   ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 115 RSA-----------KVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGV 163
                         + ++ V  Q   D + L+ + +  +    PG+  +K+       G 
Sbjct: 68  IDGHDLALADPNWLRRQVGVVLQ---DNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 164 TGNLA-LQPMYT---------LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL 213
              ++ L+  Y          LSGGQ+ R+A A+     P I++ D+ ++ LD ++   +
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVI 184
Query: 214 IQGLVLFQGG--ILMVSHDEHLISGSVEELWVVSEGK 248
           ++ +     G  +++++H    +  + + + V+ +GK
Sbjct: 185 MRNMHKICKGRTVIIIAHRLSTVKNA-DRIIVMEKGK 220

>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260

Iteration: 1
 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 103/233 (44%), Gaps = 33/233 (14%)
Query: 56  ISFSDASFGYPGGP--ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLI------AGELQ 107
           I FSD +F YP        K++NF I   +  A+VG  G GKSTI KL+       G+++
Sbjct: 18  IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIK 77
Query: 108 PSSGTVFR----SAKVRIAVFSQHHVDGLDLSSNPLLY--MMRCFPGVPEQKLRAHLGSF 161
                V +    S +  I +  Q  +   +     +LY  +      V +    A L  F
Sbjct: 78  IGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDF 137
Query: 162 ---------GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEA 212
                     + GN  ++    LSGG++ R+A A+   K P I++ DE ++ LD    E 
Sbjct: 138 IEALPKKWDTIVGNKGMK----LSGGERQRIAIARCLLKDPKIVIFDEATSSLD-SKTEY 192
Query: 213 LIQGLV---LFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM 262
           L Q  V        +++++H    IS S E + ++++GK     GT  D  K+
Sbjct: 193 LFQKAVEDLRKNRTLIIIAHRLSTIS-SAESIILLNKGKIVE-KGTHKDLLKL 243

>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 99/237 (41%), Gaps = 30/237 (12%)
Query: 56  ISFSDASFGYPGGPI-LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV- 113
           + F + +F YPG  +   +N+N  I     +A+VG +G GKSTI  LI        G + 
Sbjct: 342 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL 401
Query: 114 ----------FRSAKVRIAVFSQHHVDGLDLSSNPLLYMMR---CFPGVPEQKLRAHLGS 160
                       S + ++A+ SQ+     D  +N + Y          + E    A+   
Sbjct: 402 MDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMD 461
Query: 161 FGVTGNLALQPM-----YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ 215
           F    +  L  +       LSGGQ+ R+A A+   +   I++LDE ++ LD ++  A+  
Sbjct: 462 FINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQA 521
Query: 216 GLVLFQGG--ILMVSHDEHLISGS-----VEELWVVSEGKATPF---HGTFHDYKKM 262
            L   Q     L+++H    I  +     VE+  +V  G  +     HG +    KM
Sbjct: 522 ALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHKM 578

>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 69/153 (45%), Gaps = 14/153 (9%)
Query: 67  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR------ 120
           G  ++ K++N  I     +  VGP+G GKST+L++IAG    +SG +F   K        
Sbjct: 14  GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA 73
Query: 121 ---IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----LQPMY 173
              + +  Q +     LS    +       G  ++ +   +        LA     +P  
Sbjct: 74  ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-K 132
Query: 174 TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 206
            LSGGQ+ RVA  +    +P + LLDEP ++LD
Sbjct: 133 ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165

>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 73/142 (51%), Gaps = 9/142 (6%)
Query: 72  FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA----KVRIAV-FSQ 126
            +N+N  ++   ++ ++GPNG GK+T+L+ I+G L P SG +F +     K+R  + +S 
Sbjct: 21  LENINLEVN-GEKVIILGPNGSGKTTLLRAISG-LLPYSGNIFINGMEVRKIRNYIRYST 78
Query: 127 HHVDGLDL--SSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVA 184
           +  +  ++  + N ++Y+     G+        L +  +   +  + +Y LS GQ   V 
Sbjct: 79  NLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVR 138
Query: 185 FAKITFKKPHIILLDEPSNHLD 206
            +     +P I+ LDEP  ++D
Sbjct: 139 TSLALASQPEIVGLDEPFENVD 160

>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 69/153 (45%), Gaps = 14/153 (9%)
Query: 67  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR------ 120
           G  ++ K++N  I     +  VGP+G GKST+L++IAG    +SG +F   K        
Sbjct: 14  GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA 73
Query: 121 ---IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----LQPMY 173
              + +  Q +     LS    +       G  ++ +   +        LA     +P  
Sbjct: 74  ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-K 132
Query: 174 TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 206
            LSGGQ+ RVA  +    +P + LLDEP ++LD
Sbjct: 133 ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165

>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 90/209 (43%), Gaps = 53/209 (25%)
Query: 76  NFGIDLDSRI-----AMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVD 130
           NF +++D  +      ++GP G GKS  L+LIAG ++P  G V               ++
Sbjct: 13  NFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEV--------------RLN 58
Query: 131 GLDLSSNPLLYMMRCFPGVPEQ-KLRAHLGSF--------------------------GV 163
           G D++  PL    R    VP+   L  HL  +                          G+
Sbjct: 59  GADIT--PLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGI 116
Query: 164 TGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGG 223
              L  +P   LSGG++ RVA A+    +P ++LLDEP + +DL     L++ L   Q  
Sbjct: 117 AHLLDRKPA-RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQRE 175
Query: 224 ----ILMVSHDEHLISGSVEELWVVSEGK 248
               IL V+HD    +   +E+ V+  G+
Sbjct: 176 FDVPILHVTHDLIEAAMLADEVAVMLNGR 204

>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 74/149 (49%), Gaps = 20/149 (13%)
Query: 74  NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF-----------RSAKVRIA 122
            LN  I     + ++GP+G GK+T L++IAG  +P+ G ++           +   + + 
Sbjct: 29  KLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISM- 87
Query: 123 VFSQH----HVDGLDLSSNPLLYMMRCFPGVP-EQKLRAHLGSFGVTGNLALQPMYTLSG 177
           VF  +    H+   +  + PL   ++ FP    ++++R       +   L   P   LSG
Sbjct: 88  VFQSYAVWPHMTVYENIAFPL--KIKKFPKDEIDKRVRWAAELLQIEELLNRYPA-QLSG 144
Query: 178 GQKSRVAFAKITFKKPHIILLDEPSNHLD 206
           GQ+ RVA A+    +P ++L+DEP ++LD
Sbjct: 145 GQRQRVAVARAIVVEPDVLLMDEPLSNLD 173

>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 74/149 (49%), Gaps = 20/149 (13%)
Query: 74  NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF-----------RSAKVRIA 122
            LN  I     + ++GP+G GK+T L++IAG  +P+ G ++           +   + + 
Sbjct: 30  KLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISM- 88
Query: 123 VFSQH----HVDGLDLSSNPLLYMMRCFPGVP-EQKLRAHLGSFGVTGNLALQPMYTLSG 177
           VF  +    H+   +  + PL   ++ FP    ++++R       +   L   P   LSG
Sbjct: 89  VFQSYAVWPHMTVYENIAFPL--KIKKFPKDEIDKRVRWAAELLQIEELLNRYPA-QLSG 145
Query: 178 GQKSRVAFAKITFKKPHIILLDEPSNHLD 206
           GQ+ RVA A+    +P ++L+DEP ++LD
Sbjct: 146 GQRQRVAVARAIVVEPDVLLMDEPLSNLD 174

>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 14/153 (9%)
Query: 67  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR------ 120
           G  ++ K++N  I     +  VGP+G GKST+L++IAG    +SG +F   K        
Sbjct: 14  GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA 73
Query: 121 ---IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----LQPMY 173
              + +  Q +     LS    +       G  ++ +   +        LA     +P  
Sbjct: 74  ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-K 132
Query: 174 TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 206
            LSGGQ+ RVA  +    +P + LLD+P ++LD
Sbjct: 133 ALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLD 165

>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582

Iteration: 1
 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 95/233 (40%), Gaps = 59/233 (25%)
Query: 56  ISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
           +   D +F Y G   P L  +++F I     +A+VG +G GKSTI  L        SG++
Sbjct: 342 VDVKDVTFTYQGKEKPAL-SHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSI 400
Query: 114 FRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL--QP 171
                          +DG D+    L  + R F  V +     HL +  +  N+A   + 
Sbjct: 401 C--------------LDGHDVRDYKLTNLRRHFALVSQN---VHLFNDTIANNIAYAAEG 443
Query: 172 MYT----------------------------------LSGGQKSRVAFAKITFKKPHIIL 197
            YT                                  LSGGQ+ RVA A+   +   +++
Sbjct: 444 EYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLI 503
Query: 198 LDEPSNHLDLDAVEALIQGLVLFQGG--ILMVSHDEHLISGSVEELWVVSEGK 248
           LDE ++ LD ++  A+   L   Q    +L+++H    I  + +E+ VV EG+
Sbjct: 504 LDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQA-DEILVVDEGE 555

>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 87/194 (44%), Gaps = 12/194 (6%)
Query: 56  ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 115
           +   D S GY   P+L + +   I+  + +   GPNGIGK+T+LK I+  L+P  G +  
Sbjct: 11  LEIRDLSVGY-DKPVL-ERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIY 68
Query: 116 S----AKVRIAVF--SQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL 169
           +     KV+  +F   +  +    +S    L  +    GV   K    + +      L L
Sbjct: 69  NGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNK-NEIMDALESVEVLDL 127
Query: 170 -QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL--VLFQGGILM 226
            + +  LS G   RV  A        I +LD+P   +D D+   +++ +  +L + GI++
Sbjct: 128 KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVI 187
Query: 227 VSHDEHLISGSVEE 240
           +S  E L    V E
Sbjct: 188 ISSREELSYCDVNE 201

>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 93/204 (45%), Gaps = 32/204 (15%)
Query: 71  LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVD 130
           +  +++  +D    + ++G +G GK+T+L+ +AG  QP SG +  S K    +FS++   
Sbjct: 19  VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKT---IFSKN--T 73
Query: 131 GLDLSSNPLLYMMR---CFPGVP-------------------EQKLRAHLGSFGVTGNLA 168
            L +    L Y+++    FP +                     Q++ A L   G++  LA
Sbjct: 74  NLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGIS-ELA 132
Query: 169 LQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD----LDAVEALIQGLVLFQGGI 224
            +  + LSGGQ+ R A A+     P +ILLDEP + LD        E +I  L       
Sbjct: 133 GRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSA 192
Query: 225 LMVSHDEHLISGSVEELWVVSEGK 248
           + VSHD        + + V+ +G+
Sbjct: 193 VFVSHDREEALQYADRIAVMKQGR 216

>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 103/244 (42%), Gaps = 54/244 (22%)
Query: 56  ISFSDASFGY--PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
           +SF +  F Y     P+L   +NF +   S +A++G  G GKST++ LI   + P  G V
Sbjct: 342 VSFENVEFRYFENTDPVL-SGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRV 400
Query: 114 FRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQ--------KLRAHLGSFGVTG 165
                          VD LD+ +  L  +      VP++        K     G    T 
Sbjct: 401 --------------EVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATD 446
Query: 166 N---------------LALQPMY---------TLSGGQKSRVAFAKITFKKPHIILLDEP 201
           +               ++L   Y           SGGQK R++ A+   KKP +++LD+ 
Sbjct: 447 DEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDC 506
Query: 202 SNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSV-EELWVVSEGKATPFHGTFHDYK 260
           ++ +D    + ++ GL  +  G       + + +  + +++ V+ EGK   F GT   +K
Sbjct: 507 TSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGF-GT---HK 562
Query: 261 KMLQ 264
           ++L+
Sbjct: 563 ELLE 566

>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 85/193 (44%), Gaps = 48/193 (24%)
Query: 56  ISFSDASFGYPG--GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
           I     SF Y     PIL K++N  I+    +A VG +G GKST++ LI      +SG +
Sbjct: 340 IDIDHVSFQYNDNEAPIL-KDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQI 398
Query: 114 ---------FRSAKVR--IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKL-------R 155
                    F +  +R  I +  Q   D +  S      ++   P   ++++        
Sbjct: 399 LIDGHNIKDFLTGSLRNQIGLVQQ---DNILFSDTVKENILLGRPTATDEEVVEAAKMAN 455
Query: 156 AH-------------LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS 202
           AH             +G  GV           LSGGQK R++ A+I    P I++LDE +
Sbjct: 456 AHDFIMNLPQGYDTEVGERGVK----------LSGGQKQRLSIARIFLNNPPILILDEAT 505
Query: 203 NHLDLDAVEALIQ 215
           + LDL++ E++IQ
Sbjct: 506 SALDLES-ESIIQ 517

>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 96/231 (41%), Gaps = 52/231 (22%)
Query: 78  GIDLD----SRIAMVGPNGIGKSTILKLIAGELQPS----SGTVF---------RSAKVR 120
           GI LD    S  A+VG +  GKSTI++ +   L P+    SG V          R  ++R
Sbjct: 26  GISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELR 85
Query: 121 ------IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPE----------------QKLR-AH 157
                 IA+  Q     L    NP + ++  F    E                +KLR   
Sbjct: 86  KIRWKEIALVPQAAQQSL----NPTMKVIEHFKDTVEAHGVRWSHSELIEKASEKLRMVR 141
Query: 158 LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL 217
           L    V  +  LQ    LSGG K RV  A      P +++LDEP++ LD+     +IQ L
Sbjct: 142 LNPEAVLNSYPLQ----LSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLL 197
Query: 218 VLFQG----GILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQ 264
              +      ++ V+HD  + +   +++ V+  G    ++ TF  +K  L 
Sbjct: 198 KELKKMLKITLIFVTHDIAVAAELADKVAVIYGGNLVEYNSTFQIFKNPLH 248

>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 77/183 (42%), Gaps = 33/183 (18%)
Query: 82  DSRI-AMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLL 140
           DS I  M+G NG GK+T++KL+AG L+P  G                 +  L++S  P  
Sbjct: 377 DSEILVMMGENGTGKTTLIKLLAGALKPDEG---------------QDIPKLNVSMKPQK 421
Query: 141 YMMRCFPGVPEQ----KLRAHLGSFGVTGNLAL---------QPMYTLSGGQKSRVAFAK 187
              + FPG   Q    K+R    +     ++           Q +  LSGG+  RVA   
Sbjct: 422 IAPK-FPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVL 480
Query: 188 ITFKKPHIILLDEPSNHLDLDA---VEALIQGLVLFQGGILMVSHDEHLISGSVEELWVV 244
                  I L+DEPS +LD +       +I+  +L       +   + +++  + +  +V
Sbjct: 481 ALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIV 540
Query: 245 SEG 247
            EG
Sbjct: 541 FEG 543

>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 19/133 (14%)
Query: 85  IAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHV----DG-----LDLS 135
           I ++GPNGIGK+T  +++ GE+    G+V  + + +I  +    +    DG     L+ +
Sbjct: 297 IGILGPNGIGKTTFARILVGEITADEGSV--TPEKQILSYKPQRIFPNYDGTVQQYLENA 354
Query: 136 SNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI 195
           S   L     F     ++L  H         L    +  LSGG+  ++  A    K+  +
Sbjct: 355 SKDALSTSSWFFEEVTKRLNLH--------RLLESNVNDLSGGELQKLYIAATLAKEADL 406
Query: 196 ILLDEPSNHLDLD 208
            +LD+PS++LD++
Sbjct: 407 YVLDQPSSYLDVE 419

>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/219 (22%), Positives = 94/219 (42%), Gaps = 43/219 (19%)
Query: 55  IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
           I + ++ S   P G I      +G+        +G +G GKST+++ +    +P+ G+V 
Sbjct: 18  IQALNNVSLHVPAGQI------YGV--------IGASGAGKSTLIRCVNLLERPTEGSVL 63
Query: 115 --------------RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP----GVPEQKLR- 155
                           A+ +I +  QH     +L S+  ++     P      P+ +++ 
Sbjct: 64  VDGQELTTLSESELTKARRQIGMIFQH----FNLLSSRTVFGNVALPLELDNTPKDEVKR 119
Query: 156 --AHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL 213
               L S    G+        LSGGQK RVA A+     P ++L DE ++ LD     ++
Sbjct: 120 RVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSI 179
Query: 214 IQGLVLFQG----GILMVSHDEHLISGSVEELWVVSEGK 248
           ++ L          IL+++H+  ++    + + V+S G+
Sbjct: 180 LELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGE 218

>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 75/187 (40%), Gaps = 32/187 (17%)
Query: 87  MVGPNGIGKSTILKLIAGEL----------QPSSGTVFRSAKVRIAVFSQHHVDGLDLSS 136
           +VGPNG GKST+L   AG            QP          +  A  SQ         +
Sbjct: 31  LVGPNGAGKSTLLARXAGXTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPF---A 87
Query: 137 NPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL-----QPMYTLSGGQKSRVAFAKITFK 191
            P+ + +         K R  L +  V G LAL     +    LSGG+  RV  A +  +
Sbjct: 88  TPVWHYLTLHQ---HDKTRTELLN-DVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQ 143
Query: 192 -------KPHIILLDEPSNHLDLDAVEALIQGL-VLFQGGILMV--SHDEHLISGSVEEL 241
                     ++LLDEP N LD+    AL + L  L Q G+ +V  SHD +         
Sbjct: 144 ITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQQGLAIVXSSHDLNHTLRHAHRA 203
Query: 242 WVVSEGK 248
           W++  GK
Sbjct: 204 WLLKGGK 210

>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 75/187 (40%), Gaps = 32/187 (17%)
Query: 87  MVGPNGIGKSTILKLIAGEL----------QPSSGTVFRSAKVRIAVFSQHHVDGLDLSS 136
           +VGPNG GKST+L   AG            QP          +  A  SQ         +
Sbjct: 31  LVGPNGAGKSTLLARXAGXTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPF---A 87
Query: 137 NPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL-----QPMYTLSGGQKSRVAFAKITFK 191
            P+ + +         K R  L +  V G LAL     +    LSGG+  RV  A +  +
Sbjct: 88  TPVWHYLTLHQ---HDKTRTELLN-DVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQ 143
Query: 192 -------KPHIILLDEPSNHLDLDAVEALIQGL-VLFQGGILMV--SHDEHLISGSVEEL 241
                     ++LLDEP N LD+    AL + L  L Q G+ +V  SHD +         
Sbjct: 144 ITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALSQQGLAIVXSSHDLNHTLRHAHRA 203
Query: 242 WVVSEGK 248
           W++  GK
Sbjct: 204 WLLKGGK 210

>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 71/166 (42%), Gaps = 25/166 (15%)
Query: 56  ISFSDASFGYP-GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
           I+  +A+F +    P     + F I   + +A+VG  G GKS++L  +  E+    G V 
Sbjct: 4   ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVA 63
Query: 115 ---------RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKL-----RAHLGS 160
                    + A ++     ++ + G  L       +++    +P+ ++     R  +G 
Sbjct: 64  IKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGE 123
Query: 161 FGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 206
            GV           LSGGQK RV+ A+  +    I L D+P + +D
Sbjct: 124 KGVN----------LSGGQKQRVSLARAVYSNADIYLFDDPLSAVD 159

>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 76/187 (40%), Gaps = 32/187 (17%)
Query: 87  MVGPNGIGKSTILKLIAGEL----------QPSSGTVFRSAKVRIAVFSQHHVDGLDLSS 136
           +VGPNG GKST+L  +AG            QP          +  A  SQ         +
Sbjct: 31  LVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPF---A 87
Query: 137 NPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL-----QPMYTLSGGQKSRVAFAKITFK 191
            P+ + +         K R  L +  V G LAL     +    LSGG+  RV  A +  +
Sbjct: 88  TPVWHYLTLHQ---HDKTRTELLN-DVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQ 143
Query: 192 -------KPHIILLDEPSNHLDLDAVEALIQGL-VLFQGG--ILMVSHDEHLISGSVEEL 241
                     ++LLD+P N LD+    AL + L  L Q G  I+M SHD +         
Sbjct: 144 ITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRA 203
Query: 242 WVVSEGK 248
           W++  GK
Sbjct: 204 WLLKGGK 210

>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/219 (21%), Positives = 93/219 (42%), Gaps = 43/219 (19%)
Query: 55  IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
           I + ++ S   P G I      +G+        +G +G GKST+++ +    +P+ G+V 
Sbjct: 41  IQALNNVSLHVPAGQI------YGV--------IGASGAGKSTLIRCVNLLERPTEGSVL 86
Query: 115 --------------RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP----GVPEQKLR- 155
                           A+ +I    QH     +L S+  ++     P      P+ +++ 
Sbjct: 87  VDGQELTTLSESELTKARRQIGXIFQH----FNLLSSRTVFGNVALPLELDNTPKDEVKR 142
Query: 156 --AHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL 213
               L S    G+        LSGGQK RVA A+     P ++L D+ ++ LD     ++
Sbjct: 143 RVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSI 202
Query: 214 IQGLVLFQG----GILMVSHDEHLISGSVEELWVVSEGK 248
           ++ L          IL+++H+  ++    + + V+S G+
Sbjct: 203 LELLKDINRRLGLTILLITHEXDVVKRICDCVAVISNGE 241

>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/219 (21%), Positives = 94/219 (42%), Gaps = 43/219 (19%)
Query: 55  IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
           I + ++ S   P G I      +G+        +G +G GKST+++ +    +P+ G+V 
Sbjct: 41  IQALNNVSLHVPAGQI------YGV--------IGASGAGKSTLIRCVNLLERPTEGSVL 86
Query: 115 --------------RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP----GVPEQKLR- 155
                           A+ +I +  QH     +L S+  ++     P      P+ +++ 
Sbjct: 87  VDGQELTTLSESELTKARRQIGMIFQH----FNLLSSRTVFGNVALPLELDNTPKDEVKR 142
Query: 156 --AHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL 213
               L S    G+        LSGGQK RVA A+     P ++L D+ ++ LD     ++
Sbjct: 143 RVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSI 202
Query: 214 IQGLVLFQG----GILMVSHDEHLISGSVEELWVVSEGK 248
           ++ L          IL+++H+  ++    + + V+S G+
Sbjct: 203 LELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGE 241

>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 72/170 (42%), Gaps = 21/170 (12%)
Query: 56  ISFSDASFGYP-GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKL------IAGELQ- 107
           ++  D +  Y  GG  + +N++F I    R+ ++G  G GKST+L          GE+Q 
Sbjct: 20  MTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQI 79
Query: 108 ----PSSGTVFRSAKV------RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAH 157
                 S T+ +  K       ++ +FS      LD   N        +    E  LR+ 
Sbjct: 80  DGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLD--PNAAHSDQEIWKVADEVGLRSV 137
Query: 158 LGSF-GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 206
           +  F G    + +     LS G K  +  A+    K  I+LLDEPS HLD
Sbjct: 138 IEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLD 187

>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 70/166 (42%), Gaps = 22/166 (13%)
Query: 68  GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV--FRSAKVRIAVFS 125
           G  + K +++ I    +  + G NG GK+T+L ++      +SGTV  F     ++   +
Sbjct: 33  GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYSA 92
Query: 126 QHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL------------------ 167
           +     +   S+ LL   +    V +  +     S GV  ++                  
Sbjct: 93  ETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGXS 152
Query: 168 --ALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVE 211
             A Q +  LS G+K RV  A+    +P +++LDEP+  LD  A E
Sbjct: 153 AKAQQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARE 198

>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 71/165 (43%), Gaps = 35/165 (21%)
Query: 67  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQ 126
           G   + K ++F I+      ++GPNG GK+T L++I+  ++PSSG V         VF +
Sbjct: 26  GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV--------TVFGK 77
Query: 127 HHVDGLDLSSNPLLYM------MRCFPGVPEQKLRAHLGSFGVTGNLALQPMY------- 173
           + V+        + Y+       R   G+  + LR  +  F  + +  ++ M        
Sbjct: 78  NVVEEPHEVRKLISYLPEEAGAYRNMQGI--EYLR-FVAGFYASSSSEIEEMVERATEIA 134
Query: 174 -----------TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 207
                      T S G   ++  A+     P + +LDEP++ LD+
Sbjct: 135 GLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDV 179

>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/215 (21%), Positives = 89/215 (41%), Gaps = 33/215 (15%)
Query: 16  SLVQSRIKALERMGHV---DEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILF 72
           +++Q  + + ER+  +   +E  +DPD        + R     I F +  F Y     + 
Sbjct: 318 NMIQMALASAERIFEILDLEEEKDDPD------AVELREVRGEIEFKNVWFSYDKKKPVL 371
Query: 73  KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF-----------RSAKVRI 121
           K++ F I    ++A+VGP G GK+TI+ L+        G +             S +  I
Sbjct: 372 KDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSI 431
Query: 122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLR-----AHLGSFGVTGNLALQPMYT-- 174
            +  Q   D +  S+     +    PG  +++++      H   F        + + T  
Sbjct: 432 GIVLQ---DTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDN 488
Query: 175 ---LSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 206
              LS GQ+  +A  +     P I++LDE ++++D
Sbjct: 489 GEDLSQGQRQLLAITRAFLANPKILILDEATSNVD 523

>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 86/197 (43%), Gaps = 33/197 (16%)
Query: 68  GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG--ELQPSSGTVFRSAKVRIAVFS 125
           G  + K +N  +      A++GPNG GKST+ K++AG  E     G +    +  + +  
Sbjct: 15  GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSP 74
Query: 126 QHHV-DGLDLSSNPLLYMMRCFPGVP-----EQKLRAHLG------SFGVTGNLALQPM- 172
                 GL L+     Y +   PGV         L+A LG       F      AL+ + 
Sbjct: 75  DERARKGLFLAFQ---YPVEV-PGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLD 130
Query: 173 -----------YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQ 221
                         SGG+K R    ++   +P   +LDE  + LD+DA++ + +G+   +
Sbjct: 131 WDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMR 190
Query: 222 G---GILMVSHDEHLIS 235
           G   G L+++H + +++
Sbjct: 191 GPNFGALVITHYQRILN 207

>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 70/160 (43%), Gaps = 23/160 (14%)
Query: 71  LFKNLNFGIDLDSRIAMVGPNGIGKSTILK-------------LIAGELQPSSGTVFRSA 117
           + K +N  I     + ++GP+G GKST L+             +I G    +  T     
Sbjct: 18  VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 77
Query: 118 KVRIAVFSQH-----HVDGLD-LSSNPLLYMMRCFP-GVPEQKLRAHLGSFGVTGNLALQ 170
           +  + +  Q      H+  L+ ++  P+   +R +P    E K    L   G+       
Sbjct: 78  REEVGMVFQRFNLFPHMTVLNNITLAPM--KVRKWPREKAEAKAMELLDKVGLKDKAHAY 135
Query: 171 PMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAV 210
           P  +LSGGQ  RVA A+    +P I+L DEP++ LD + V
Sbjct: 136 P-DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMV 174

>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 70/160 (43%), Gaps = 23/160 (14%)
Query: 71  LFKNLNFGIDLDSRIAMVGPNGIGKSTILK-------------LIAGELQPSSGTVFRSA 117
           + K +N  I     + ++GP+G GKST L+             +I G    +  T     
Sbjct: 39  VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 118 KVRIAVFSQH-----HVDGLD-LSSNPLLYMMRCFP-GVPEQKLRAHLGSFGVTGNLALQ 170
           +  + +  Q      H+  L+ ++  P+   +R +P    E K    L   G+       
Sbjct: 99  REEVGMVFQRFNLFPHMTVLNNITLAPM--KVRKWPREKAEAKAMELLDKVGLKDKAHAY 156
Query: 171 PMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAV 210
           P  +LSGGQ  RVA A+    +P I+L DEP++ LD + V
Sbjct: 157 P-DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMV 195

>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 75/187 (40%), Gaps = 32/187 (17%)
Query: 87  MVGPNGIGKSTILKLIAGEL----------QPSSGTVFRSAKVRIAVFSQHHVDGLDLSS 136
           +VGPNG GKST+L  +AG            QP          +  A  SQ         +
Sbjct: 31  LVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPF---A 87
Query: 137 NPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL-----QPMYTLSGGQKSRVAFAKITFK 191
            P+ + +         K R  L +  V G LAL     +    LSGG+  RV  A +  +
Sbjct: 88  TPVWHYLTLH---QHDKTRTELLN-DVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQ 143
Query: 192 -------KPHIILLDEPSNHLDLDAVEALIQGL-VLFQGG--ILMVSHDEHLISGSVEEL 241
                     ++LLD+P   LD+    AL + L  L Q G  I+M SHD +         
Sbjct: 144 ITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRA 203
Query: 242 WVVSEGK 248
           W++  GK
Sbjct: 204 WLLKGGK 210

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	266
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	7e-44
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	1e-40
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	1e-32
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	7e-33
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	8e-32
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	7e-27
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	3e-26
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	4e-26
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	9e-25
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	2e-24
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	2e-17
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	4e-23
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	4e-19
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	6e-22
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	1e-14
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	8e-22
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	8e-21
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	7e-18
1sgw_A	214	Putative ABC transporter; structural genomics, P p	4e-17
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	3e-16
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	3e-15
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	3e-15
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	5e-14
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	1e-14
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	2e-13
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	5e-13
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	1e-12
1g6h_A	257	High-affinity branched-chain amino acid transport	2e-12
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	5e-11
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	7e-10
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	7e-07
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	7e-10
1ji0_A	240	ABC transporter; ATP binding protein, structural g	8e-10
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	1e-09
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	7e-05
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	2e-09
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	2e-09
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	3e-09
2ghi_A	260	Transport protein; multidrug resistance protein, M	5e-09
2ghi_A	260	Transport protein; multidrug resistance protein, M	1e-06
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	6e-09
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	9e-05
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	6e-09
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	3e-05
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	6e-09
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	1e-08
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	8e-05
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	1e-08
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	2e-08
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	5e-05
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	7e-08
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	7e-08
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	2e-07
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	1e-04
1b0u_A	262	Histidine permease; ABC transporter, transport pro	2e-07
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	5e-07
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	8e-06
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	3e-05
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	1e-04
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	3e-04
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	6e-04
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	3e-04
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	4e-04
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	5e-04
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	9e-04

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score =  157 bits (399), Expect = 7e-44
 Identities = 38/141 (26%), Positives = 70/141 (49%), Gaps = 1/141 (0%)

Query: 115 RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQ-PMY 173
            +A +      + H   +             F  +  +++  H    G+   +     + 
Sbjct: 841 DNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIR 900

Query: 174 TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHL 233
            LSGGQK ++  A  T+++PH+I+LDEP+N+LD D++ AL + L  F+GG+++++H    
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEF 960

Query: 234 ISGSVEELWVVSEGKATPFHG 254
                EE+W V +G+ TP   
Sbjct: 961 TKNLTEEVWAVKDGRMTPSGH 981

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score =  148 bits (374), Expect = 1e-40
 Identities = 57/241 (23%), Positives = 97/241 (40%), Gaps = 6/241 (2%)

Query: 26  ERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRI 85
           + +          +        D+      +   + S  Y G  IL       +    R 
Sbjct: 406 KDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAY-GAKILLNKTQLRLKRARRY 464

Query: 86  AMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRC 145
            + GPNG GKST+++ IA        T     + R  V+ +H +DG    ++ L ++   
Sbjct: 465 GICGPNGCGKSTLMRAIANGQVDGFPT---QEECRT-VYVEHDIDGTHSDTSVLDFVFES 520

Query: 146 FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHL 205
                ++ ++  L  FG T  +   P+  LSGG K ++A A+   +   I+LLDEP+NHL
Sbjct: 521 -GVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHL 579

Query: 206 DLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQS 265
           D   V  L+  L       + +SHD   +    E +      K   + G F ++ K   +
Sbjct: 580 DTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKKCPA 639

Query: 266 R 266
            
Sbjct: 640 A 640

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score =  125 bits (315), Expect = 1e-32
 Identities = 40/221 (18%), Positives = 76/221 (34%), Gaps = 34/221 (15%)

Query: 1   MQSFIDKFRYNAKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSD 60
             + ++           V+++ KA+ ++                              ++
Sbjct: 647 SNTDLEFKFPEPGYLEGVKTKQKAIVKV------------------------------TN 676

Query: 61  ASFGYPGGP-ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV 119
             F YPG       ++NF   L SRIA++GPNG GKST++ ++ GEL P+SG V+     
Sbjct: 677 MEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENC 736

Query: 120 RIAVFSQHHVDGLDLSSN--PLLYMMRCFPGVPEQKLRAH-LGSFGVTGNLALQPMYTLS 176
           RIA   QH    ++   +  P  Y+   F    +++               A+  ++ + 
Sbjct: 737 RIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIE 796

Query: 177 GGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL 217
           G  +           K             ++         +
Sbjct: 797 GTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPM 837

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279

 Score =  120 bits (303), Expect = 7e-33
 Identities = 50/227 (22%), Positives = 90/227 (39%), Gaps = 30/227 (13%)

Query: 50  RPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS 109
           R    +I          G  IL K +++ I    +  + G NG GK+T+L ++      +
Sbjct: 16  RGSHMLIQLDQIGRMKQGKTIL-KKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT 74

Query: 110 SGTVF-------------RSAKVRIAVFSQHHVDGLDLSSNPL------LYMMRCFPGVP 150
           SGTV               + +  I   S   ++        +       +         
Sbjct: 75  SGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDI 134

Query: 151 --EQKLRAH--LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 206
             E +  AH  L   G+    A Q +  LS G+K RV  A+    +P +++LDEP+  LD
Sbjct: 135 DDEIRNEAHQLLKLVGM-SAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLD 193

Query: 207 LDAVEALIQGL-VLFQGG----ILMVSHDEHLISGSVEELWVVSEGK 248
             A E+L+  L  L        ++ V+H    I+ +  ++ ++ +G+
Sbjct: 194 FIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQ 240

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253

 Score =  116 bits (294), Expect = 8e-32
 Identities = 51/198 (25%), Positives = 83/198 (41%), Gaps = 33/198 (16%)

Query: 54  PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
             +S  +  F Y     LF+ LNF ++    +A++G NG GKST+L L+ G  +P  G +
Sbjct: 3   KALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62

Query: 114 FRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGV---------- 163
               +  I    Q        S   ++ M R            H+ +F            
Sbjct: 63  -EVYQ-SIGFVPQFFSSPFAYSVLDIVLMGR----------STHINTFAKPKSHDYQVAM 110

Query: 164 -------TGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL---DAVEAL 213
                    +LA +   +LSGGQ+  +  A+    +  +ILLDEP++ LDL   D V +L
Sbjct: 111 QALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSL 170

Query: 214 IQGLVLFQG-GILMVSHD 230
           +  L   Q   ++  +H 
Sbjct: 171 LIDLAQSQNMTVVFTTHQ 188

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275

 Score =  104 bits (261), Expect = 7e-27
 Identities = 56/253 (22%), Positives = 102/253 (40%), Gaps = 56/253 (22%)

Query: 54  PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
            I+   + ++ Y  G    K +N  I      A++G NG+GKST+ +   G L+PSSG +
Sbjct: 6   YILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65

Query: 114 FRSAKVRIAVFSQHHVDGLDLSSNPL-LYMMR-----------------------CF-P- 147
                           D   +  +   +  +R                        F   
Sbjct: 66  L--------------FDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAV 111

Query: 148 --GVPEQKLRAH----LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP 201
              +PE ++R      L   G+   L  +P + LS GQK RVA A +   +P +++LDEP
Sbjct: 112 NMKLPEDEIRKRVDNALKRTGIEH-LKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEP 170

Query: 202 SNHLD---LDAVEALIQGLVLFQG-GILMVSHDEHLISGSVEELWVVSEGKATPFHGT-- 255
           +  LD   +  +  L+  +    G  I++ +HD  ++    + ++V+ EG+     G   
Sbjct: 171 TAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVI-LQGNPK 229

Query: 256 --FHDYKKMLQSR 266
             F + + + +  
Sbjct: 230 EVFAEKEVIRKVN 242

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score =  106 bits (266), Expect = 3e-26
 Identities = 59/238 (24%), Positives = 90/238 (37%), Gaps = 26/238 (10%)

Query: 43  EFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLI 102
           +     D     ++ +      Y  G    +     I     I +VGPNGIGK+T +K++
Sbjct: 345 KLSERVDVERETLVEYPRLVKDY--GSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKML 402

Query: 103 AGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNP------LLYMMRCFPGVPEQKLRA 156
           AG  +P+ G V     V    +   +     + +        LL  +             
Sbjct: 403 AGVEEPTEGKVEWDLTV---AYKPQY-----IKAEYEGTVYELLSKIDSSKLNSNFYKTE 454

Query: 157 HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLD---AVEAL 213
            L   G+           LSGG+  RVA A    +   I LLDEPS +LD++   AV   
Sbjct: 455 LLKPLGIIDLYDRNVE-DLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRA 513

Query: 214 IQGLVL-FQGGILMVSHDEHLISGSVEELWV-----VSEGKATPFHGTFHDYKKMLQS 265
           I+ L+   +   L+V HD  +I    + L V        G+A P  G      + L S
Sbjct: 514 IRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMREGMNRFLAS 571

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score =  105 bits (265), Expect = 4e-26
 Identities = 45/194 (23%), Positives = 76/194 (39%), Gaps = 25/194 (12%)

Query: 60  DASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV 119
           D    Y G           +     + +VGPNG GK+T +K++AG+L P+      S   
Sbjct: 96  DCVHRY-GVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDN 154

Query: 120 RIAVFSQH-------HVDGLDLSSNPLLYM----MRCFPGVPEQKLRAH---------LG 159
            I  F  +        +   ++             +   G   + L+           + 
Sbjct: 155 VIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVK 214

Query: 160 SFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA---VEALIQG 216
              +  N+  + ++ LSGG+  RVA A    +K H    DEPS++LD+     V  +I+ 
Sbjct: 215 ELELE-NVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRR 273

Query: 217 LVLFQGGILMVSHD 230
           L      +L+V HD
Sbjct: 274 LANEGKAVLVVEHD 287

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249

 Score = 98.0 bits (245), Expect = 9e-25
 Identities = 43/185 (23%), Positives = 70/185 (37%), Gaps = 24/185 (12%)

Query: 67  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV---------FRSA 117
                   L+  +     + +VGPNG GKST+L  +AG +    G++         + + 
Sbjct: 11  AESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPLEAWSAT 69

Query: 118 KV--RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTL 175
           K+    A  SQ             L + +       + L    G+  +      +    L
Sbjct: 70  KLALHRAYLSQQQTPPFATPVWHYLTLHQ-HDKTRTELLNDVAGALALDD-KLGRSTNQL 127

Query: 176 SGGQKSRVAFA-------KITFKKPHIILLDEPSNHLDLD---AVEALIQGLVLFQGGIL 225
           SGG+  RV  A               ++LLDEP N LD+    A++ ++  L      I+
Sbjct: 128 SGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIV 187

Query: 226 MVSHD 230
           M SHD
Sbjct: 188 MSSHD 192

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score =  101 bits (253), Expect = 2e-24
 Identities = 47/199 (23%), Positives = 73/199 (36%), Gaps = 17/199 (8%)

Query: 45  PTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG 104
            T D +      +FS  S     G  +             + M+G NG GK+T++KL+AG
Sbjct: 341 ATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAG 400

Query: 105 ELQPSSGTVFRSAKV-----RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLG 159
            L+P  G       V     +IA      V    L    +            Q     + 
Sbjct: 401 ALKPDEGQDIPKLNVSMKPQKIAPKFPGTV--RQLFFKKIRGQFL-----NPQFQTDVVK 453

Query: 160 SFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLD---AVEALIQG 216
              +  ++  Q +  LSGG+  RVA          I L+DEPS +LD +       +I+ 
Sbjct: 454 PLRID-DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRR 512

Query: 217 LVLFQG-GILMVSHDEHLI 234
            +L       +V HD  + 
Sbjct: 513 FILHNKKTAFIVEHDFIMA 531

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 80.8 bits (200), Expect = 2e-17
 Identities = 40/207 (19%), Positives = 80/207 (38%), Gaps = 32/207 (15%)

Query: 54  PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
           P    +  +  Y        +          + +VG NGIGKST LK++AG+ +P+ G  
Sbjct: 76  PTNLEAHVTHRYSANSFK-LHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF 134

Query: 114 FRSAKVRI-----------------------AVFSQHHVDGLDLSS-NPLLYMMRCFPGV 149
               + +                        A+    +VD +  +   P+  +       
Sbjct: 135 DDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLR 194

Query: 150 PE---QKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 206
            E   + ++ ++    +  N+  + +  LSGG+  R A      ++  + + DEPS++LD
Sbjct: 195 MEKSPEDVKRYIKILQLE-NVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLD 253

Query: 207 LDA---VEALIQGLVLFQGGILMVSHD 230
           +        +I+ L+     ++ V HD
Sbjct: 254 VKQRLNAAQIIRSLLAPTKYVICVEHD 280

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 97.0 bits (242), Expect = 4e-23
 Identities = 36/206 (17%), Positives = 72/206 (34%), Gaps = 11/206 (5%)

Query: 38  PDYKFEFPTPDDRP----GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGI 93
              + +F   +                       G       N        I ++GPNGI
Sbjct: 246 RPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGEAKEGEIIGILGPNGI 305

Query: 94  GKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYM-MRCFPGVPEQ 152
           GK+T  +++ GE+    G+V    ++ ++   Q      D +    L    +        
Sbjct: 306 GKTTFARILVGEITADEGSVTPEKQI-LSYKPQRIFPNYDGTVQQYLENASKDALSTSSW 364

Query: 153 KLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLD---A 209
                     +   L    +  LSGG+  ++  A    K+  + +LD+PS++LD++    
Sbjct: 365 FFEEVTKRLNLH-RLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYI 423

Query: 210 VEALIQGLVL-FQGGILMVSHDEHLI 234
           V   I+ +    +    ++ HD  + 
Sbjct: 424 VAKAIKRVTRERKAVTFIIDHDLSIH 449

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 85.5 bits (212), Expect = 4e-19
 Identities = 41/206 (19%), Positives = 79/206 (38%), Gaps = 46/206 (22%)

Query: 59  SDASFGYPGGPILFKNLNFGIDLD-SRIAMVGPNGIGKSTILKLIAGELQPSSGTV---- 113
            +    Y      FK        + + + ++G NG+GK+T+LK++AGE+ P+ G      
Sbjct: 3   GEVIHRY--KVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKV 60

Query: 114 --------FRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFG--- 162
                   FR     I  + +      +L SN L  + +      E   +   G+     
Sbjct: 61  GKDEVLKRFRGK--EIYNYFK------ELYSNELKIVHK--IQYVEYASKFLKGTVNEIL 110

Query: 163 -----------VTGNLALQPMY-----TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 206
                      V   L +  ++      LSGG   R+  A    ++  + + D+PS++LD
Sbjct: 111 TKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLD 170

Query: 207 LDAVEALIQGLVLFQGG--ILMVSHD 230
           +     + + +        +++V HD
Sbjct: 171 VRERMNMAKAIRELLKNKYVIVVDHD 196

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 93.5 bits (233), Expect = 6e-22
 Identities = 57/225 (25%), Positives = 87/225 (38%), Gaps = 22/225 (9%)

Query: 18  VQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRP---GPPIISFSDASFGYPGGPILFKN 74
            ++ I    R    DE V    Y+ +F    +R       ++++      Y  G    + 
Sbjct: 247 TRNGINEFLRGYLKDENVRFRPYEIKFTKTGERVEIERETLVTYPRLVKDY--GSFRLEV 304

Query: 75  LNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-----RIAVFSQHHV 129
               I     I +VGPNGIGK+T +K++AG  +P+ G +     V      I    +  V
Sbjct: 305 EPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTV 364

Query: 130 DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT 189
             L    +                    L   G+      +    LSGG+  RVA A   
Sbjct: 365 YELLSKIDASKLN-------SNFYKTELLKPLGIIDLYDREVN-ELSGGELQRVAIAATL 416

Query: 190 FKKPHIILLDEPSNHLDLD---AVEALIQGLVLFQG-GILMVSHD 230
            +   I LLDEPS +LD++   AV   I+ L+       L+V HD
Sbjct: 417 LRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD 461

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 72.3 bits (178), Expect = 1e-14
 Identities = 48/210 (22%), Positives = 73/210 (34%), Gaps = 41/210 (19%)

Query: 54  PIISFS----DASFGYPGGPILFK-NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP 108
           P         D    Y  G   F       +     + +VGPNG GKST +K++AG+L P
Sbjct: 16  PRSHMEQLEEDCVHRY--GVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIP 73

Query: 109 SSGTVFRSAKVRIAVFSQHHVDGLDL---------------------SSNPLLYMMRCFP 147
           +      S    I  F      G +L                        P     +   
Sbjct: 74  NLCGDNDSWDGVIRAF-----RGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIE 128

Query: 148 GVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN 203
            +       KL   + +  +  N+  + +  LSGG+  RVA A    +       DEPS+
Sbjct: 129 LLKKADETGKLEEVVKALELE-NVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSS 187

Query: 204 HLDLDA---VEALIQGLVLFQGGILMVSHD 230
           +LD+         I+ L      +L+V HD
Sbjct: 188 YLDIRQRLNAARAIRRLSEEGKSVLVVEHD 217

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263

 Score = 90.5 bits (225), Expect = 8e-22
 Identities = 39/200 (19%), Positives = 79/200 (39%), Gaps = 40/200 (20%)

Query: 55  IISFSDASFGYPGGPILF---KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 111
           +I   +      G        +N+N  ++   ++ ++GPNG GK+T+L+ I+G L P SG
Sbjct: 1   MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISG-LLPYSG 58

Query: 112 TVFRSAKVRIAVFSQHHVDGLDLSS----------NPLLYMMR-------CFP----GVP 150
            +F              ++G+++             P  Y +               G+ 
Sbjct: 59  NIF--------------INGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLD 104

Query: 151 EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAV 210
                  L +  +   +  + +Y LS GQ   V  +     +P I+ LDEP  ++D    
Sbjct: 105 RDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARR 164

Query: 211 EALIQGLVLFQGGILMVSHD 230
             + + +  +    ++V+H+
Sbjct: 165 HVISRYIKEYGKEGILVTHE 184

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266

 Score = 88.0 bits (219), Expect = 8e-21
 Identities = 49/231 (21%), Positives = 90/231 (38%), Gaps = 56/231 (24%)

Query: 56  ISFSDASFGYPGGPIL----FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 111
           I   + S  +  G  L     +N++  I+    + + G  G GKST+L+++AG ++P+SG
Sbjct: 3   IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62

Query: 112 TVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMR-----------------------CF-P 147
            V                DG         Y +R                        F  
Sbjct: 63  DVL--------------YDGERKK----GYEIRRNIGIAFQYPEDQFFAERVFDEVAFAV 104

Query: 148 ---GVPE---QKLRAHLGSFGVTG-NLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE 200
                       ++  +   G+   +   +  + LSGG+K RVA A +   +P I++LDE
Sbjct: 105 KNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDE 164

Query: 201 PSNHLD---LDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGK 248
           P   LD      +  +++        ++++SHD   +   V+ + V+ +GK
Sbjct: 165 PLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGK 215

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243

 Score = 79.4 bits (197), Expect = 7e-18
 Identities = 41/206 (19%), Positives = 79/206 (38%), Gaps = 72/206 (34%)

Query: 55  IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
           ++S     F Y     + ++++F    +S IA  GP+G GKSTI  L+    QP++G + 
Sbjct: 1   MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60

Query: 115 RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLG--------------- 159
                         +DG  + +            +  +  R+ +G               
Sbjct: 61  --------------IDGQPIDN------------ISLENWRSQIGFVSQDSAIMAGTIRE 94

Query: 160 --SFGVTGN-------------------LALQPMY---------TLSGGQKSRVAFAKIT 189
             ++G+ G+                     +              +SGGQ+ R+A A+  
Sbjct: 95  NLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAF 154

Query: 190 FKKPHIILLDEPSNHLDLDAVEALIQ 215
            + P I++LDE +  LD ++ E+++Q
Sbjct: 155 LRNPKILMLDEATASLDSES-ESMVQ 179

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214

 Score = 76.4 bits (189), Expect = 4e-17
 Identities = 36/142 (25%), Positives = 56/142 (39%), Gaps = 10/142 (7%)

Query: 73  KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF------RSAKVRIAVFSQ 126
           + +   I+  + +   GPNGIGK+T+LK I+  L+P  G +          K +I    +
Sbjct: 26  ERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPE 85

Query: 127 HHVDGLDLSSNPLLYMMRCFPGVPEQKLRAH--LGSFGVTGNLALQPMYTLSGGQKSRVA 184
             +    +S    L  +    GV   K      L S  V      + +  LS G   RV 
Sbjct: 86  EIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD--LKKKLGELSQGTIRRVQ 143

Query: 185 FAKITFKKPHIILLDEPSNHLD 206
            A        I +LD+P   +D
Sbjct: 144 LASTLLVNAEIYVLDDPVVAID 165

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247

 Score = 75.2 bits (186), Expect = 3e-16
 Identities = 48/205 (23%), Positives = 75/205 (36%), Gaps = 72/205 (35%)

Query: 56  ISFSDASFGY-PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
           I+F +  F Y P  P++  N+N  I     I +VG +G GKST+ KLI     P +G V 
Sbjct: 8   ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67

Query: 115 RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGS-------FGVT--G 165
                         +DG DL+                  LR  +G           +   
Sbjct: 68  --------------IDGHDLAL------------ADPNWLRRQVGVVLQDNVLLNRSIID 101

Query: 166 NLAL-QPMYTL----------------------------------SGGQKSRVAFAKITF 190
           N++L  P  ++                                  SGGQ+ R+A A+   
Sbjct: 102 NISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALV 161

Query: 191 KKPHIILLDEPSNHLDLDAVEALIQ 215
             P I++ DE ++ LD ++ E +I 
Sbjct: 162 NNPKILIFDEATSALDYES-EHVIM 185

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224

 Score = 71.8 bits (177), Expect = 3e-15
 Identities = 56/208 (26%), Positives = 92/208 (44%), Gaps = 36/208 (17%)

Query: 54  PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL-QPSSGT 112
            I+   +      G  IL K ++  +     ++++G +G GKST+L ++ G L  P+ G 
Sbjct: 3   EILRAENIKKVIRGYEIL-KGISLSVKKGEFVSIIGASGSGKSTLLYIL-GLLDAPTEGK 60

Query: 113 VF------------RSAKVR---IA-VFSQHH-VDGLDLSSN---PLLYMMRCFPGVP-- 150
           VF              + +R   +  VF  H+ +  L    N   P+L M     G P  
Sbjct: 61  VFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM-----GKPKK 115

Query: 151 EQKLRAH--LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL- 207
           E K R    L   G+   L+ +P   LSGG++ RVA A+    +P ++  DEP+ +LD  
Sbjct: 116 EAKERGEYLLSELGLGDKLSRKPY-ELSGGEQQRVAIARALANEPILLFADEPTGNLDSA 174

Query: 208 --DAVEALIQGLVLFQGGILMVSHDEHL 233
               V  +   +      I+MV+H+  L
Sbjct: 175 NTKRVMDIFLKINEGGTSIVMVTHEREL 202

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 74.3 bits (183), Expect = 3e-15
 Identities = 48/206 (23%), Positives = 82/206 (39%), Gaps = 71/206 (34%)

Query: 56   ISFSDASFGYPGGP--ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
            + FS   F YP  P   + + L+  +     +A+VG +G GKST+++L+     P +G+V
Sbjct: 1031 VQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSV 1090

Query: 114  FRSAKVRIAVFSQHHVDGLDLSS---------------NPLLYMM---------RCFPGV 149
            F              +DG ++                  P+L+                V
Sbjct: 1091 F--------------LDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVV 1136

Query: 150  PEQKLR-------AH-------------LGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT 189
              +++         H             +G  G            LSGGQK R+A A+  
Sbjct: 1137 SYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQ----------LSGGQKQRIAIARAL 1186

Query: 190  FKKPHIILLDEPSNHLDLDAVEALIQ 215
             ++PHI+LLDE ++ LD ++ E ++Q
Sbjct: 1187 VRQPHILLLDEATSALDTES-EKVVQ 1211

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 70.8 bits (174), Expect = 5e-14
 Identities = 48/204 (23%), Positives = 77/204 (37%), Gaps = 69/204 (33%)

Query: 56  ISFSDASFGYPGGP--ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
           + F +  F YP      + K LN  +     +A+VG +G GKST ++L+     P  G V
Sbjct: 388 LEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMV 447

Query: 114 FRSAKVRIAVFSQHHVDGLDLSS---------------NPLLYMMRCF-------PGVPE 151
                          +DG D+ +                P+L+              V  
Sbjct: 448 S--------------IDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTM 493

Query: 152 QKLR-------AH-------------LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK 191
            ++        A+             +G  G            LSGGQK R+A A+   +
Sbjct: 494 DEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQ----------LSGGQKQRIAIARALVR 543

Query: 192 KPHIILLDEPSNHLDLDAVEALIQ 215
            P I+LLDE ++ LD ++ EA++Q
Sbjct: 544 NPKILLLDEATSALDTES-EAVVQ 566

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271

 Score = 70.6 bits (174), Expect = 1e-14
 Identities = 46/207 (22%), Positives = 72/207 (34%), Gaps = 74/207 (35%)

Query: 56  ISFSDASFGYPGGP--ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
           + F D SF YP  P   + + L F +      A+VGPNG GKST+  L+    QP+ G V
Sbjct: 17  VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV 76

Query: 114 FRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLG-------------- 159
                          +DG  L      Y            L   +               
Sbjct: 77  L--------------LDGEPLVQYDHHY------------LHTQVAAVGQEPLLFGRSFR 110

Query: 160 ---SFGVTGNLALQPMY----------------------------TLSGGQKSRVAFAKI 188
              ++G+T    ++ +                              LSGGQ+  VA A+ 
Sbjct: 111 ENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARA 170

Query: 189 TFKKPHIILLDEPSNHLDLDAVEALIQ 215
             +KP +++LD  ++ LD    +  +Q
Sbjct: 171 LIRKPRLLILDNATSALDAGN-QLRVQ 196

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256

 Score = 66.8 bits (164), Expect = 2e-13
 Identities = 32/149 (21%), Positives = 60/149 (40%), Gaps = 17/149 (11%)

Query: 73  KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF----------RSAKVRIA 122
           K ++F I+      ++GPNG GK+T L++I+  ++PSSG V              +  I+
Sbjct: 32  KGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLIS 91

Query: 123 VFSQH-HVDGLDLSSNPLLYMMRCFPGVPEQKLRAH----LGSFGVTGNLALQPMYTLSG 177
              +       ++     L  +  F      ++           G+        + T S 
Sbjct: 92  YLPEEAGAYR-NMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEK-IKDRVSTYSK 149

Query: 178 GQKSRVAFAKITFKKPHIILLDEPSNHLD 206
           G   ++  A+     P + +LDEP++ LD
Sbjct: 150 GMVRKLLIARALMVNPRLAILDEPTSGLD 178

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235

 Score = 65.6 bits (161), Expect = 5e-13
 Identities = 56/212 (26%), Positives = 99/212 (46%), Gaps = 37/212 (17%)

Query: 55  IISFSDASFGYPGGPILFKNLNFGIDLDSR----IAMVGPNGIGKSTILKLIAGEL-QPS 109
           ++   + +  Y  G  +   L   ++L+ +    ++++GP+G GKST+L +I G L +P+
Sbjct: 1   MVKLKNVTKTYKMGEEIIYALK-NVNLNIKEGEFVSIMGPSGSGKSTMLNII-GCLDKPT 58

Query: 110 SGTVF------------RSAKVR---IA-VFSQHH-VDGLDLSSN---PLLYMMRCFPGV 149
            G V+               K+R   I  VF Q + +  L    N   PL++  +    +
Sbjct: 59  EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIF--KYRGAM 116

Query: 150 P--EQKLRAH--LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHL 205
              E++ RA   L    +    A      LSGGQ+ RVA A+     P IIL D+P+  L
Sbjct: 117 SGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWAL 176

Query: 206 DL---DAVEALIQGLVLFQGG-ILMVSHDEHL 233
           D    + +  L++ L    G  +++V+HD ++
Sbjct: 177 DSKTGEKIMQLLKKLNEEDGKTVVVVTHDINV 208

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257

 Score = 64.5 bits (158), Expect = 2e-12
 Identities = 38/211 (18%), Positives = 75/211 (35%), Gaps = 41/211 (19%)

Query: 74  NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF---------RSAKV----- 119
            ++  ++      ++GPNG GKST++ +I G L+   G V+           A++     
Sbjct: 25  GVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 84

Query: 120 -R----IAVFSQ----------HHVDGLDLSSNPLLYMMRCFPGVPEQKLRAH----LGS 160
            R         +              G     +PL  +        E+++       L  
Sbjct: 85  VRTFQTPQPLKEMTVLENLLIGEICPG----ESPLNSLFYKKWIPKEEEMVEKAFKILEF 140

Query: 161 FGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS---NHLDLDAVEALIQGL 217
             +  +L  +    LSGGQ   V   +     P +I++DEP           +   +  L
Sbjct: 141 LKL-SHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLEL 199

Query: 218 VLFQGGILMVSHDEHLISGSVEELWVVSEGK 248
                  L++ H   ++   ++ L+V+  G+
Sbjct: 200 KAKGITFLIIEHRLDIVLNYIDHLYVMFNGQ 230

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240

 Score = 60.3 bits (147), Expect = 5e-11
 Identities = 50/197 (25%), Positives = 79/197 (40%), Gaps = 59/197 (29%)

Query: 72  FKNLNFGIDLDSR---IAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHH 128
             N    +D +       ++GP G GKS  L+LIAG ++P  G V               
Sbjct: 11  LGNFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVR-------------- 56

Query: 129 VDGLDLSSNP--------------LLYMMRCFP-------------GVP----EQKLRAH 157
           ++G D++  P              L      FP              V     ++++R  
Sbjct: 57  LNGADITPLPPERRGIGFVPQDYAL------FPHLSVYRNIAYGLRNVERVERDRRVREM 110

Query: 158 LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL 217
               G+   L  +P   LSGG++ RVA A+    +P ++LLDEP + +DL     L++ L
Sbjct: 111 AEKLGIAHLLDRKP-ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEEL 169

Query: 218 VLFQG--GI--LMVSHD 230
              Q    +  L V+HD
Sbjct: 170 RFVQREFDVPILHVTHD 186

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306

 Score = 57.2 bits (139), Expect = 7e-10
 Identities = 35/123 (28%), Positives = 53/123 (43%), Gaps = 35/123 (28%)

Query: 45  PTPDDRPG-PPI------ISFSDASFGY-PGGPILFKNLNFGIDLDSRIAMVGPNGIGKS 96
               D PG  P+      I F +  F Y  G   L ++++F +     +A+VGP+G GKS
Sbjct: 36  TEVKDLPGAGPLRFQKGRIEFENVHFSYADGRETL-QDVSFTVMPGQTLALVGPSGAGKS 94

Query: 97  TILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRA 156
           TIL+L+      SSG +               +DG D+S             V +  LR+
Sbjct: 95  TILRLLFRFYDISSGCIR--------------IDGQDISQ------------VTQASLRS 128

Query: 157 HLG 159
           H+G
Sbjct: 129 HIG 131

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306

 Score = 48.4 bits (116), Expect = 7e-07
 Identities = 22/41 (53%), Positives = 26/41 (63%), Gaps = 1/41 (2%)

Query: 175 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ 215
           LSGG+K RVA A+   K P IILLDE ++ LD    E  IQ
Sbjct: 191 LSGGEKQRVAIARTILKAPGIILLDEATSALDTSN-ERAIQ 230

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598

 Score = 58.0 bits (141), Expect = 7e-10
 Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 9/94 (9%)

Query: 12  AKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPI---ISFSDASFGYPGG 68
           + + +++Q  + + ER   + E+++  +   E   PD      +   I F +  F Y   
Sbjct: 314 SNQFNMIQMALASAER---IFEILDLEE---EKDDPDAVELREVRGEIEFKNVWFSYDKK 367

Query: 69  PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLI 102
             + K++ F I    ++A+VGP G GK+TI+ L+
Sbjct: 368 KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLL 401

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240

 Score = 56.7 bits (138), Expect = 8e-10
 Identities = 36/184 (19%), Positives = 70/184 (38%), Gaps = 52/184 (28%)

Query: 52  GPPIISFSDASFGYPGGPIL-FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSS 110
              ++        Y  G I   K ++  +     + ++G NG GK+T L  IAG ++   
Sbjct: 3   SDIVLEVQSLHVYY--GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQK 60

Query: 111 GTVFRSAKVRIAVFSQHHVDGLDLSSNP--------LLYMM---RCFPG--VPEQKLRAH 157
           G +                +G D+++ P        +  +    R FP   V  + L   
Sbjct: 61  GKI--------------IFNGQDITNKPAHVINRMGIALVPEGRRIFPELTV-YENLM-- 103

Query: 158 LGSFGVTGNLA----LQPMY---------------TLSGGQKSRVAFAKITFKKPHIILL 198
           +G++           L+ ++               TLSGG++  +A  +    +P ++++
Sbjct: 104 MGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMM 163

Query: 199 DEPS 202
           DEPS
Sbjct: 164 DEPS 167

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290

 Score = 56.6 bits (137), Expect = 1e-09
 Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 37  DPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKS 96
               K          G   +SFS+ S      P+L K++NF I+    +A+ G  G GK+
Sbjct: 22  FEKAKQNNNNRKTSNGDDSLSFSNFSLLGT--PVL-KDINFKIERGQLLAVAGSTGAGKT 78

Query: 97  TILKLIAGELQPSSGTVFRSAKVRIAVFSQ 126
           ++L +I GEL+PS G +  S   RI+  SQ
Sbjct: 79  SLLMMIMGELEPSEGKIKHSG--RISFCSQ 106

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290

 Score = 42.3 bits (100), Expect = 7e-05
 Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 17/94 (18%)

Query: 174 TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQ---GGIL----- 225
           TLSGGQ++R++ A+  +K   + LLD P        ++ L     +F+     ++     
Sbjct: 159 TLSGGQRARISLARAVYKDADLYLLDSP-----FGYLDVLT-EKEIFESCVCKLMANKTR 212

Query: 226 -MVSHDEHLISGSVEELWVVSEGKATPFHGTFHD 258
            +V+     +    +++ ++ EG +  F+GTF +
Sbjct: 213 ILVTSKMEHLK-KADKILILHEGSSY-FYGTFSE 244

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 47/214 (21%), Positives = 73/214 (34%), Gaps = 52/214 (24%)

Query: 34  VVNDPDYKFEFPTPDDRPGPPIISFSDASFGY-PGGPILFKNLNFGIDLDSRIAMVGPNG 92
           ++ +   K      D  P    ++  D +  Y  GG  + +N++F I    R+ ++G  G
Sbjct: 2   LIENSHVK---K-DDIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTG 57

Query: 93  IGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMR-------- 144
            GKST+L      L  + G +               +DG+   S  L    +        
Sbjct: 58  SGKSTLLSAFLR-LLNTEGEIQ--------------IDGVSWDSITLEQWRKAFGVIPQK 102

Query: 145 --CFPGVPEQKL----------------RAHLGSFGVTGNLALQPMYT-----LSGGQKS 181
              F G   + L                   L S        L  +       LS G K 
Sbjct: 103 VFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQ 162

Query: 182 RVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ 215
            +  A+    K  I+LLDEPS HLD      +I+
Sbjct: 163 LMCLARSVLSKAKILLLDEPSAHLDP-VTYQIIR 195

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263

 Score = 55.7 bits (135), Expect = 2e-09
 Identities = 44/203 (21%), Positives = 67/203 (33%), Gaps = 66/203 (32%)

Query: 45  PTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG 104
             P       +I        +    +L K +N  I     + ++GP+G GKST L+ +  
Sbjct: 14  LVPRGSHMLQMIDVHQLKKSFGSLEVL-KGINVHIREGEVVVVIGPSGSGKSTFLRCLNL 72

Query: 105 ELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLG----S 160
                 G +               +DG++L +                K+R  +G     
Sbjct: 73  LEDFDEGEII--------------IDGINLKA----------KDTNLNKVREEVGMVFQR 108

Query: 161 FG------VTGNLALQPMYT-------------------------------LSGGQKSRV 183
           F       V  N+ L PM                                 LSGGQ  RV
Sbjct: 109 FNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRV 168

Query: 184 AFAKITFKKPHIILLDEPSNHLD 206
           A A+    +P I+L DEP++ LD
Sbjct: 169 AIARALAMEPKIMLFDEPTSALD 191

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339

 Score = 55.8 bits (134), Expect = 3e-09
 Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 9/87 (10%)

Query: 157 HLGSFGVTGNLALQPMYTLSGGQKSRVAFA------KITFKKPHIILLDEPSNHLDLDAV 210
           +     V      +P+  LSGG++  +  A           +  +++LDEP+ +LD +  
Sbjct: 231 NKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERR 290

Query: 211 EALIQGL-VLFQGG--ILMVSHDEHLI 234
             LI  +    +    +++VSHDE L 
Sbjct: 291 RKLITIMERYLKKIPQVILVSHDEELK 317

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260

 Score = 54.5 bits (132), Expect = 5e-09
 Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 4/50 (8%)

Query: 56  ISFSDASFGY---PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLI 102
           I FSD +F Y        L K++NF I   +  A+VG  G GKSTI KL+
Sbjct: 18  IEFSDVNFSYPKQTNHRTL-KSINFFIPSGTTCALVGHTGSGKSTIAKLL 66

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260

 Score = 47.9 bits (115), Expect = 1e-06
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 175 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ 215
           LSGG++ R+A A+   K P I++ DE ++ LD    E L Q
Sbjct: 156 LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKT-EYLFQ 195

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229

 Score = 54.1 bits (131), Expect = 6e-09
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 3/72 (4%)

Query: 56  ISFSDASFGY-PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
           +   + +  +  GG  + K++NF I+    +A+ G  G GK+++L +I GEL+PS G + 
Sbjct: 7   VVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK 66

Query: 115 RSAKVRIAVFSQ 126
            S   RI+  SQ
Sbjct: 67  HSG--RISFCSQ 76

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229

 Score = 41.8 bits (99), Expect = 9e-05
 Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 17/94 (18%)

Query: 174 TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQ---GGIL----- 225
           TLSGGQ++R++ A+  +K   + LLD P        ++ L     +F+     ++     
Sbjct: 130 TLSGGQRARISLARAVYKDADLYLLDSP-----FGYLDVLT-EKEIFESCVCKLMANKTR 183

Query: 226 -MVSHDEHLISGSVEELWVVSEGKATPFHGTFHD 258
            +V+     +    +++ ++ EG +  F+GTF +
Sbjct: 184 ILVTSKMEHLK-KADKILILHEGSSY-FYGTFSE 215

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578

 Score = 55.3 bits (134), Expect = 6e-09
 Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 13/97 (13%)

Query: 12  AKRASLVQSRIKALERMGHV-DEVVNDPDYKFEFPTPDDRPGPPI---ISFSDASFGYPG 67
               + +     +++R+  + DE  +  +          +P       I     SF Y  
Sbjct: 298 VASFTTLTQSFASMDRVFQLIDEDYDIKN------GVGAQPIEIKQGRIDIDHVSFQYND 351

Query: 68  G--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLI 102
              PIL K++N  I+    +A VG +G GKST++ LI
Sbjct: 352 NEAPIL-KDINLSIEKGETVAFVGMSGGGKSTLINLI 387

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578

 Score = 43.7 bits (104), Expect = 3e-05
 Identities = 20/42 (47%), Positives = 31/42 (73%), Gaps = 1/42 (2%)

Query: 174 TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ 215
            LSGGQK R++ A+I    P I++LDE ++ LDL++ E++IQ
Sbjct: 477 KLSGGQKQRLSIARIFLNNPPILILDEATSALDLES-ESIIQ 517

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348

 Score = 54.9 bits (133), Expect = 6e-09
 Identities = 42/166 (25%), Positives = 62/166 (37%), Gaps = 53/166 (31%)

Query: 73  KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGL 132
            NL+  ++      ++GP G GK+  L+LIAG   P SG +               +DG 
Sbjct: 17  DNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL--------------LDGK 62

Query: 133 DLSSNP--------------LLYMMRCFP---------------GVP-EQKLRAHLGSFG 162
           D++                 L      FP                +   +++        
Sbjct: 63  DVTDLSPEKHDIAFVYQNYSL------FPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLK 116

Query: 163 VTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP-SNHLDL 207
           +   L   P  TLSGG++ RVA A+     P I+LLDEP S  LD 
Sbjct: 117 IEHLLDRNP-LTLSGGEQQRVALARALVTNPKILLLDEPLSA-LDP 160

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582

 Score = 54.1 bits (131), Expect = 1e-08
 Identities = 30/137 (21%), Positives = 51/137 (37%), Gaps = 23/137 (16%)

Query: 1   MQSFIDKFRYNAKRASLVQSRIKALERMGHV-DEVVNDPDYKFEFPTPDDRPGPPIISFS 59
           M   +   +      S  Q  + A + +  + D      + K+E    +       +   
Sbjct: 291 MFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNGKYEAERVNGE-----VDVK 345

Query: 60  DASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA 117
           D +F Y G   P L  +++F I     +A+VG +G GKSTI  L        SG++    
Sbjct: 346 DVTFTYQGKEKPAL-SHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSIC--- 401

Query: 118 KVRIAVFSQHHVDGLDL 134
                      +DG D+
Sbjct: 402 -----------LDGHDV 407

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582

 Score = 42.6 bits (101), Expect = 8e-05
 Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 1/42 (2%)

Query: 174 TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ 215
           +LSGGQ+ RVA A+   +   +++LDE ++ LD ++ E  IQ
Sbjct: 480 SLSGGQRQRVAIARALLRDAPVLILDEATSALDTES-ERAIQ 520

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237

 Score = 52.9 bits (128), Expect = 1e-08
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 3/72 (4%)

Query: 56  ISFSDASFGY-PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
           I+  +A+F +    P     + F I   + +A+VG  G GKS++L  +  E+    G V 
Sbjct: 4   ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVA 63

Query: 115 RSAKVRIAVFSQ 126
                 +A   Q
Sbjct: 64  IKG--SVAYVPQ 73

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582

 Score = 53.4 bits (129), Expect = 2e-08
 Identities = 29/130 (22%), Positives = 47/130 (36%), Gaps = 31/130 (23%)

Query: 12  AKRASLVQSRIKALERMGHVDEVVNDPDYKFEFPTPDDRPGPPI-----ISFSDASFGYP 66
               +  Q  + A +    +  +++           D+           + F + +F YP
Sbjct: 302 TNVNAQFQRGMAACQT---LFAILDSE------QEKDEGKRVIDRATGDLEFRNVTFTYP 352

Query: 67  GG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVF 124
           G   P L +N+N  I     +A+VG +G GKSTI  LI        G +           
Sbjct: 353 GREVPAL-RNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL---------- 401

Query: 125 SQHHVDGLDL 134
               +DG DL
Sbjct: 402 ----MDGHDL 407

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582

 Score = 43.3 bits (103), Expect = 5e-05
 Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 174 TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ 215
            LSGGQ+ R+A A+   +   I++LDE ++ LD ++ E  IQ
Sbjct: 480 LLSGGQRQRIAIARALLRDSPILILDEATSALDTES-ERAIQ 520

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366

 Score = 51.5 bits (124), Expect = 7e-08
 Identities = 45/216 (20%), Positives = 75/216 (34%), Gaps = 74/216 (34%)

Query: 38  PDYKFEFPTPDDRPGPPIISFSDAS--FGYPGGPIL-FKNLNFGIDLDSRIAMVGPNGIG 94
             +        D     +I  S+ +  F      I    N++  +       ++G +G G
Sbjct: 7   HHHHHHSSGHIDDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAG 66

Query: 95  KSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKL 154
           KST+++ +    +P+ G+V               VDG +L++            + E +L
Sbjct: 67  KSTLIRCVNLLERPTEGSVL--------------VDGQELTT------------LSESEL 100

Query: 155 RAH-------------LGSFGVTGNLALQPM----------------------------- 172
                           L S  V GN+AL P+                             
Sbjct: 101 TKARRQIGMIFQHFNLLSSRTVFGNVAL-PLELDNTPKDEVKRRVTELLSLVGLGDKHDS 159

Query: 173 Y--TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 206
           Y   LSGGQK RVA A+     P ++L D+ ++ LD
Sbjct: 160 YPSNLSGGQKQRVAIARALASNPKVLLCDQATSALD 195

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587

 Score = 51.8 bits (125), Expect = 7e-08
 Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 4/86 (4%)

Query: 31  VDEVVN-DPDYKFEFPTPDDRPGPPIISFSDASFGYPGG--PILFKNLNFGIDLDSRIAM 87
           V EV+N  P  +              +SF +  F Y     P+L   +NF +   S +A+
Sbjct: 316 VLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFENTDPVL-SGVNFSVKPGSLVAV 374

Query: 88  VGPNGIGKSTILKLIAGELQPSSGTV 113
           +G  G GKST++ LI   + P  G V
Sbjct: 375 LGETGSGKSTLMNLIPRLIDPERGRV 400

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 24/69 (34%), Positives = 36/69 (52%)

Query: 46  TPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE 105
                 G   I F      YPGG    + ++F I     + ++GP+G GK+TIL+LIAG 
Sbjct: 5   HHHHHHGSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGL 64

Query: 106 LQPSSGTVF 114
            +P+ G V+
Sbjct: 65  ERPTKGDVW 73

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 15/33 (45%), Positives = 21/33 (63%)

Query: 175 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 207
           LSGGQ+ RVA A+    +P ++L DEP   +D 
Sbjct: 146 LSGGQQQRVALARALAPRPQVLLFDEPFAAIDT 178

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262

 Score = 49.9 bits (120), Expect = 2e-07
 Identities = 39/176 (22%), Positives = 64/176 (36%), Gaps = 61/176 (34%)

Query: 78  GIDLDSR----IAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD 133
           G+ L +R    I+++G +G GKST L+ I    +PS G +               V+G +
Sbjct: 24  GVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII--------------VNGQN 69

Query: 134 LSSNPLLYMMRCFPGVPE-QKLRAHLG----SFG------VTGNLALQPMY--------- 173
           ++               + + LR  L      F       V  N+   P+          
Sbjct: 70  INLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDA 129

Query: 174 -----------------------TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 206
                                   LSGGQ+ RV+ A+    +P ++L DEP++ LD
Sbjct: 130 RERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALD 185

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148

 Score = 47.4 bits (113), Expect = 5e-07
 Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 9/74 (12%)

Query: 170 QPMYTLSGGQKSRVAFA------KITFKKPHIILLDEPSNHLDLDAVEALIQGLV-LFQG 222
           +P+  LSGG++  +  A           +  +++LDEP+ +LD +    LI  +    + 
Sbjct: 53  RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK 112

Query: 223 G--ILMVSHDEHLI 234
              +++VSHDE L 
Sbjct: 113 IPQVILVSHDEELK 126

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353

 Score = 45.3 bits (108), Expect = 8e-06
 Identities = 47/186 (25%), Positives = 73/186 (39%), Gaps = 48/186 (25%)

Query: 56  ISFSDASFGYPGGPIL-FKNLNFGIDLDSRIAMVGPNGIGKSTILK-------------L 101
           I   + S  +  G ++   N+N  I+   R  ++GP+G GK+T ++              
Sbjct: 4   IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63

Query: 102 IAGELQPSSGTVFRSAKVR-IA-VFSQHHVDGLDLSSNPLLY--M-----MRCFP----G 148
               L  S+G +    + R I  VF Q             LY  +     +  FP     
Sbjct: 64  FDDRLVASNGKLIVPPEDRKIGMVF-Q----------TWALYPNLTAFENIA-FPLTNMK 111

Query: 149 VP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP-SN 203
           +      +++        +   L   P   LSG Q+ RVA A+   K P ++LLDEP SN
Sbjct: 112 MSKEEIRKRVEEVAKILDIHHVLNHFP-RELSGAQQQRVALARALVKDPSLLLLDEPFSN 170

Query: 204 HLDLDA 209
              LDA
Sbjct: 171 ---LDA 173

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359

 Score = 43.3 bits (103), Expect = 3e-05
 Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 6/61 (9%)

Query: 175 LSGGQKSRVAFAKITFKKPHIILLDEP-SNHLDLDAVEALIQGL--VLFQGGI--LMVSH 229
           LSGGQ+ R A A+     P +ILLDEP S  LD      + + +   L   G   + VSH
Sbjct: 139 LSGGQQQRAALARALAPDPELILLDEPFSA-LDEQLRRQIREDMIAALRANGKSAVFVSH 197

Query: 230 D 230
           D
Sbjct: 198 D 198

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 54  PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
             +     S  +   P+L  +++  +D    + ++G +G GK+T+L+ +AG  QP SG +
Sbjct: 3   AALHIGHLSKSFQNTPVL-NDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI 61

Query: 114 F 114
            
Sbjct: 62  S 62

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371

 Score = 42.9 bits (101), Expect = 5e-05
 Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 9/72 (12%)

Query: 171 PMYTLSGGQKSRVAFA-------KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGG 223
            +  LSGG++  VA +        +   +   I+LDEP+ +LD +    L +     +  
Sbjct: 277 TIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSI 336

Query: 224 --ILMVSHDEHL 233
             +++++H   L
Sbjct: 337 PQMIIITHHREL 348

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 2e-04
 Identities = 36/276 (13%), Positives = 83/276 (30%), Gaps = 63/276 (22%)

Query: 17  LVQSRIKALERMGHVDEVVNDPDYKF---EFPTPDDRPGPPIISFSDASFGYPGGPILFK 73
           L+  + + +++   V+EV+   +YKF      T   +P      + +          +F 
Sbjct: 71  LLSKQEEMVQKF--VEEVL-RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127

Query: 74  NLN--------------FGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV 119
             N                +     + + G  G GK+    +           V  S KV
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW---VAL--------DVCLSYKV 176

Query: 120 RIAVFSQHH-VD-GLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSG 177
           +  +  +   ++     S   +L M+        QKL   +     + +     +     
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEML--------QKLLYQIDPNWTSRSDHSSNIKLRIH 228

Query: 178 GQKSRVAFAKITFKKPH---IILLDEPSNHLDLDAVEALIQGLVLFQGG--ILMVSHDEH 232
             ++     ++   KP+   +++L    N    +A          F     IL+ +  + 
Sbjct: 229 SIQAE--LRRLLKSKPYENCLLVLLNVQNAKAWNA----------FNLSCKILLTTRFKQ 276

Query: 233 LIS--GSVEELWVVSEGKATPFHGTFHDYKKMLQSR 266
           +     +     +  +  +        D  K L  +
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLT---PDEVKSLLLK 309

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 56  ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
           I   +    +     L  N+N  I     +A++GP+G GKST+L  IAG  +P+SG ++
Sbjct: 4   IKLENIVKKFGNFTAL-NNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIY 61

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362

 Score = 39.5 bits (93), Expect = 6e-04
 Identities = 21/36 (58%), Positives = 26/36 (72%), Gaps = 4/36 (11%)

Query: 175 LSGGQKSRVAFAKITFKKPHIILLDEP-SNHLDLDA 209
           LSGGQ+ RVA A+   K+P ++LLDEP SN   LDA
Sbjct: 134 LSGGQQQRVAIARALVKEPEVLLLDEPLSN---LDA 166

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 16/50 (32%), Positives = 30/50 (60%)

Query: 65  YPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
           Y G       ++F +     +A++GP+G GK+T L ++AG  +P+SG ++
Sbjct: 12  YFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIY 61

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372

 Score = 39.9 bits (94), Expect = 4e-04
 Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 56  ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
           +   D    +     + + ++  +     + ++GP+G GK+T L++IAG  +PS G ++
Sbjct: 4   VRLVDVWKVFGEVTAV-REMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIY 61

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372

 Score = 39.9 bits (94), Expect = 5e-04
 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 56  ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
           +   + +  +     +   LN  I     + ++GP+G GK+T L++IAG  +P+ G ++
Sbjct: 12  VKLENLTKRFGNFTAV-NKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 69

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381

 Score = 39.1 bits (92), Expect = 9e-04
 Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 4/41 (9%)

Query: 78  GIDLDSR----IAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
            I+LD      +  VGP+G GKST+L++IAG    +SG +F
Sbjct: 21  DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 61

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	266
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	100.0
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	100.0
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	100.0
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	100.0
1b0u_A	262	Histidine permease; ABC transporter, transport pro	100.0
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	100.0
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	100.0
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	100.0
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	100.0
1ji0_A	240	ABC transporter; ATP binding protein, structural g	100.0
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	100.0
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	100.0
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	100.0
1g6h_A	257	High-affinity branched-chain amino acid transport	100.0
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	100.0
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	100.0
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	100.0
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	100.0
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	100.0
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	100.0
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	100.0
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	100.0
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	100.0
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	100.0
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	100.0
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	100.0
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	100.0
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	100.0
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	100.0
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	100.0
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	100.0
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	100.0
2ghi_A	260	Transport protein; multidrug resistance protein, M	100.0
1sgw_A	214	Putative ABC transporter; structural genomics, P p	100.0
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	100.0
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	100.0
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	100.0
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	100.0
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	100.0
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	100.0
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	100.0
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	100.0
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	100.0
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	100.0
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	100.0
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	100.0
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	100.0
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	100.0
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	100.0
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	100.0
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	100.0
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	100.0
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	100.0
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	100.0
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	100.0
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	100.0
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	100.0
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	100.0
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	100.0
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	100.0
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	100.0
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	100.0
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	100.0
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	100.0
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.97
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.96
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.96
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.95
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.95
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.93
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	99.93
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.92
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	99.91
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.91
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	99.91
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	99.9
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.9
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	99.9
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	99.9
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.9
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.89
2og2_A	359	Putative signal recognition particle receptor; nuc	99.89
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.89
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	99.88
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	99.88
2eyu_A	261	Twitching motility protein PILT; pilus retraction	99.87
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.87
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.87
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.86
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	99.86
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	99.86
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	99.86
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.85
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	99.85
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	99.85
4a74_A	231	DNA repair and recombination protein RADA; hydrola	99.84
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.84
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.83
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	99.82
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.82
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	99.8
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.79
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	99.79
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.79
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	99.78
3kta_B	173	Chromosome segregation protein SMC; structural mai	99.78
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	99.77
2cvh_A	220	DNA repair and recombination protein RADB; filamen	99.74
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.72
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	99.72
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	99.72
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	99.7
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	99.7
2ewv_A	372	Twitching motility protein PILT; pilus retraction	99.7
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	99.68
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	99.68
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	99.65
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	99.64
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	99.61
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	99.59
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	99.59
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	99.54
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.54
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	99.54
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.53
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	99.52
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.5
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	99.5
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	99.49
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	99.48
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	99.46
1p9r_A	418	General secretion pathway protein E; bacterial typ	99.45
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	99.45
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	99.44
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	99.43
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	99.42
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	99.41
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	99.4
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	99.39
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	99.38
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	99.37
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	99.34
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.33
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	99.33
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.32
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	99.31
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	99.29
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	99.27
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	99.26
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	99.2
2r6a_A	454	DNAB helicase, replicative helicase; replication,	99.16
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	99.16
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.14
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	99.09
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	99.05
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.05
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	99.04
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	99.0
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	98.98
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	98.98
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	98.96
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.91
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	98.9
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	98.87
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	98.85
3kta_A	182	Chromosome segregation protein SMC; structural mai	98.85
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	98.83
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	98.82
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.78
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	98.77
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.76
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.69
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	98.67
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	98.66
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.61
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.58
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	98.56
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.55
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	98.55
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.53
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	98.51
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	98.48
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	98.47
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	98.46
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.44
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	98.44
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	98.42
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	98.41
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.4
2z43_A	324	DNA repair and recombination protein RADA; archaea	98.38
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.38
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	98.37
3ice_A	422	Transcription termination factor RHO; transcriptio	98.35
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.34
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	98.32
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.31
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	98.31
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	98.3
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.29
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	98.28
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	98.27
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	98.26
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.25
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	98.25
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	98.2
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	98.2
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	98.13
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	98.09
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	98.06
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.99
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	97.98
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.96
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	97.96
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	97.94
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	97.93
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	97.9
1u94_A	356	RECA protein, recombinase A; homologous recombinat	97.9
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	97.83
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.82
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.81
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.81
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.79
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	97.76
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	97.76
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.75
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.74
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	97.74
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.73
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.73
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.73
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.7
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	97.7
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	97.69
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	97.67
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	97.67
2wji_A	165	Ferrous iron transport protein B homolog; membrane	97.66
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	97.62
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.57
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.57
1xp8_A	366	RECA protein, recombinase A; recombination, radior	97.56
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.56
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.53
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	97.5
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.48
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.45
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.43
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.42
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.39
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.37
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	97.35
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	97.35
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.33
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	97.33
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.31
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.25
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.25
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.22
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.22
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	97.22
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.21
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.21
1via_A	175	Shikimate kinase; structural genomics, transferase	97.2
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.2
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.17
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.17
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.16
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	97.16
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.15
3io5_A	333	Recombination and repair protein; storage dimer, i	97.15
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.14
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.1
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	97.09
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.08
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	97.08
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.08
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.06
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.05
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.04
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.03
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.03
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	97.02
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.0
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.0
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.99
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.98
2ged_A	193	SR-beta, signal recognition particle receptor beta	96.96
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	96.96
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	96.95
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.95
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	96.95
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	96.91
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.91
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	96.9
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	96.9
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	96.9
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	96.89
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	96.88
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	96.88
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	96.87
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.87
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.87
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	96.85
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	96.84
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.84
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.84
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.83
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	96.83
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	96.81
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	96.81
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	96.81
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	96.8
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.8
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.8
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	96.8
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.8
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	96.79
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	96.79
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	96.78
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	96.77
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	96.77
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	96.76
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.76
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	96.75
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.75
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	96.75
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.75
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	96.75
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	96.75
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	96.74
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.74
3bos_A	242	Putative DNA replication factor; P-loop containing	96.74
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.73
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	96.72
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	96.72
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.7
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	96.69
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	96.69
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	96.69
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.69
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	96.69
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.68
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	96.67
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	96.67
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	96.67
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	96.66
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	96.66
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.66
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	96.65
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.62
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	96.62
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	96.62
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	96.62
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	96.61
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	96.6
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	96.6
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	96.59
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.58
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.58
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	96.58
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	96.58
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.57
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	96.56
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	96.56
1nrj_B	218	SR-beta, signal recognition particle receptor beta	96.56
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	96.55
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	96.55
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	96.54
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	96.53
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	96.53
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	96.53
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	96.53
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	96.53
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.52
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	96.52
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	96.51
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	96.51
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	96.51
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	96.5
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	96.5
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	96.49
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	96.49
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	96.49
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.49
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	96.48
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	96.48
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	96.48
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	96.47
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	96.47
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	96.46
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	96.46
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	96.45
3llu_A	196	RAS-related GTP-binding protein C; structural geno	96.45
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	96.45
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	96.45
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	96.44
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	96.44
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	96.44
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.44
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	96.42
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	96.42
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	96.42
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	96.41
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	96.41
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	96.41
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	96.41
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	96.4
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	96.39
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.38
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	96.38
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	96.38
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	96.38
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	96.37
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	96.37
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	96.37
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	96.36
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.36
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	96.35
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	96.35
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	96.34
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	96.34
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.34
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.34
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	96.32
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	96.32
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.32
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	96.32
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	96.31
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	96.3
2fh5_B	214	SR-beta, signal recognition particle receptor beta	96.29
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.29
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.28
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	96.28
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	96.28
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	96.28
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	96.26
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	96.25
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.22
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	96.22
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	96.22
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	96.22
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.21
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.2
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	96.19
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	96.19
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	96.19
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	96.18
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	96.17
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.16
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.15
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	96.12
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	96.12
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.11
2hf9_A	226	Probable hydrogenase nickel incorporation protein	96.08
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.07
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.05
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	96.05
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	96.04
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	96.03
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	96.03
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	96.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	96.0
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	95.99
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	95.97
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	95.91
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	95.9
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	95.88
2orv_A	234	Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2	95.88
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	95.87
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	95.86
2chg_A	226	Replication factor C small subunit; DNA-binding pr	95.76
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	95.71
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	95.63
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	95.62
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	95.62
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	95.6
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	95.57
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	95.54
1wxq_A	397	GTP-binding protein; structural genomics, riken st	95.53
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	95.5
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	95.49
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	94.47
3pvs_A	447	Replication-associated recombination protein A; ma	95.48
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	95.45
2qgz_A	308	Helicase loader, putative primosome component; str	95.44
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	95.44
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	95.41
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	95.38
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	95.37
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.32
3l0o_A	427	Transcription termination factor RHO; helicase, RH	95.31
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	95.3
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	95.27
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	95.26
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	95.25
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	95.22
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	95.22
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	95.2
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	95.2
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	95.19

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=100.00  E-value=1.2e-53  Score=374.83  Aligned_cols=204  Identities=27%  Similarity=0.430  Sum_probs=172.8

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee-------------e
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-------------R  120 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-------------~  120 (266)
                      ++|+++||+++|+++..+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++..             .
T Consensus         6 ~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~   85 (275)
T 3gfo_A            6 YILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRES   85 (275)
T ss_dssp             EEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHS
T ss_pred             cEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCc
Confidence            479999999999655569999999999999999999999999999999999999999999988742             4


Q ss_pred             EEEEeccccCCCCCCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 024529          121 IAVFSQHHVDGLDLSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH  194 (266)
Q Consensus       121 i~~~~q~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~  194 (266)
                      ++|++|++...+. ..++.+++..  ......    .+++.++++.+++. ...++++.+|||||||||+|||||+.+|+
T Consensus        86 ig~v~Q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~iAraL~~~P~  163 (275)
T 3gfo_A           86 IGIVFQDPDNQLF-SASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIE-HLKDKPTHCLSFGQKKRVAIAGVLVMEPK  163 (275)
T ss_dssp             EEEECSSGGGTCC-SSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred             EEEEEcCcccccc-cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence            9999998632222 3455554432  111222    34678899999997 46788999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          195 IILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       195 lllLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      +|||||||+|||+.++..+++.+++    .+.|||+||||++++..+||++++|++|+++ +.|+++++.
T Consensus       164 lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~-~~g~~~~~~  232 (275)
T 3gfo_A          164 VLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVI-LQGNPKEVF  232 (275)
T ss_dssp             EEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEE-EEECHHHHT
T ss_pred             EEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EECCHHHHh
Confidence            9999999999999999988877754    3679999999999999999999999999997 678888764

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=100.00  E-value=5.4e-53  Score=363.17  Aligned_cols=202  Identities=24%  Similarity=0.334  Sum_probs=165.6

Q ss_pred             cEEEEeeEEEcCCC---CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-------------
Q 024529           55 IISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------  118 (266)
Q Consensus        55 ~l~~~~l~~~y~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------  118 (266)
                      +|+++||+++|+++   ..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.             
T Consensus         1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~   80 (235)
T 3tif_A            1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI   80 (235)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred             CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence            58999999999632   35899999999999999999999999999999999999999999998874             


Q ss_pred             --eeEEEEeccccCCCCCCCcHHHHHHH--hCC---CC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHH
Q 024529          119 --VRIAVFSQHHVDGLDLSSNPLLYMMR--CFP---GV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAK  187 (266)
Q Consensus       119 --~~i~~~~q~~~~~~~~~~~~~~~~~~--~~~---~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAr  187 (266)
                        ..++|++|++..  ....++.+++..  ...   ..    ..+++.++++.+++.+...++++.+|||||||||+|||
T Consensus        81 ~~~~i~~v~Q~~~l--~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAr  158 (235)
T 3tif_A           81 RRDKIGFVFQQFNL--IPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIAR  158 (235)
T ss_dssp             HHHHEEEECTTCCC--CTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred             hhccEEEEecCCcc--CCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHH
Confidence              149999998642  223345554422  111   11    13457788999999754457899999999999999999


Q ss_pred             HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          188 ITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       188 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      ||+.+|++|||||||++||+.++..+++.+++.    +.|||+||||++.+ .+||++++|++|+++ ..++.+++.
T Consensus       159 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~G~i~-~~~~~~~~~  233 (235)
T 3tif_A          159 ALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVE-REEKLRGFD  233 (235)
T ss_dssp             HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEEETTEEE-EEEECC---
T ss_pred             HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEEECCEEE-EEcChhhhc
Confidence            999999999999999999999999988877643    67999999999965 689999999999996 466666653

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=100.00  E-value=9e-53  Score=380.90  Aligned_cols=205  Identities=21%  Similarity=0.296  Sum_probs=172.2

Q ss_pred             CCCcEEEEeeEEEcCCC---CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe----------
Q 024529           52 GPPIISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------  118 (266)
Q Consensus        52 ~~~~l~~~~l~~~y~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------  118 (266)
                      ..++|+++||++.|+++   ..+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.+++.          
T Consensus        21 ~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~  100 (366)
T 3tui_C           21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL  100 (366)
T ss_dssp             --CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHH
T ss_pred             CCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence            45689999999999532   35899999999999999999999999999999999999999999998874          


Q ss_pred             ----eeEEEEeccccCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHH
Q 024529          119 ----VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKI  188 (266)
Q Consensus       119 ----~~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAra  188 (266)
                          ..+||+||++.  +....++.+++...  ....    ..+++.++|+.+|+.+ ..++++.+|||||||||+||||
T Consensus       101 ~~~r~~Ig~v~Q~~~--l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~-~~~~~~~~LSGGqkQRVaIArA  177 (366)
T 3tui_C          101 TKARRQIGMIFQHFN--LLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD-KHDSYPSNLSGGQKQRVAIARA  177 (366)
T ss_dssp             HHHHTTEEEECSSCC--CCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGG-GTTCCTTTSCHHHHHHHHHHHH
T ss_pred             HHHhCcEEEEeCCCc--cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-HhcCChhhCCHHHHHHHHHHHH
Confidence                24999999864  23334555444221  1122    2356788999999975 5678999999999999999999


Q ss_pred             HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          189 TFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       189 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      |+.+|++|||||||++||+.+...+++.|++.    +.|||+||||++++..+||+|++|++|+++ ..|+++++.
T Consensus       178 L~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv-~~g~~~ev~  252 (366)
T 3tui_C          178 LASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELI-EQDTVSEVF  252 (366)
T ss_dssp             TTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEE-ECCBHHHHH
T ss_pred             HhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence            99999999999999999999999888877643    679999999999999999999999999997 678887753

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=100.00  E-value=2.1e-52  Score=364.83  Aligned_cols=202  Identities=22%  Similarity=0.260  Sum_probs=170.5

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee-------------e
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-------------R  120 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-------------~  120 (266)
                      ++|+++||+++|+ +..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++..             .
T Consensus        23 ~~l~i~~l~~~y~-~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~  101 (263)
T 2olj_A           23 QMIDVHQLKKSFG-SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREE  101 (263)
T ss_dssp             CSEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHH
T ss_pred             heEEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCc
Confidence            4799999999994 4579999999999999999999999999999999999999999999987731             3


Q ss_pred             EEEEeccccCCCCCCCcHHHHHHH---hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCC
Q 024529          121 IAVFSQHHVDGLDLSSNPLLYMMR---CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP  193 (266)
Q Consensus       121 i~~~~q~~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p  193 (266)
                      ++|++|++..  ....++.+++..   ......    .+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|
T Consensus       102 i~~v~Q~~~l--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGqkQRv~lAraL~~~p  178 (263)
T 2olj_A          102 VGMVFQRFNL--FPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKD-KAHAYPDSLSGGQAQRVAIARALAMEP  178 (263)
T ss_dssp             EEEECSSCCC--CTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGG-GTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred             EEEEeCCCcC--CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch-HhcCChhhCCHHHHHHHHHHHHHHCCC
Confidence            8999998632  223344444322   111222    346788999999974 567889999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          194 HIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       194 ~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      ++|||||||++||+.++..+++.|++.   +.|||+||||++++..+||++++|++|+++ ..|+++++.
T Consensus       179 ~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~  247 (263)
T 2olj_A          179 KIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYII-EEGKPEDLF  247 (263)
T ss_dssp             SEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEE-EECCHHHHH
Confidence            999999999999999999988877653   679999999999999999999999999996 568887764

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=100.00  E-value=3.4e-52  Score=363.63  Aligned_cols=202  Identities=22%  Similarity=0.310  Sum_probs=169.8

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee--------------
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV--------------  119 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~--------------  119 (266)
                      ++|+++||+++|+ +..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++..              
T Consensus         5 ~~l~i~~l~~~y~-~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~   83 (262)
T 1b0u_A            5 NKLHVIDLHKRYG-GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA   83 (262)
T ss_dssp             CCEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred             ceEEEeeEEEEEC-CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccccccc
Confidence            4799999999994 5579999999999999999999999999999999999999999999987631              


Q ss_pred             ----------eEEEEeccccCCCCCCCcHHHHHHH---hCCCCc----HHHHHHHHHhcCCCccc-ccCCCCCCChHHHH
Q 024529          120 ----------RIAVFSQHHVDGLDLSSNPLLYMMR---CFPGVP----EQKLRAHLGSFGVTGNL-ALQPMYTLSGGQKS  181 (266)
Q Consensus       120 ----------~i~~~~q~~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~l~~~~l~~~~-~~~~~~~LSgGqkq  181 (266)
                                .++|++|++..  ....++.+++..   ......    .+++.++++.+++.+ . .++++.+|||||||
T Consensus        84 ~~~~~~~~~~~i~~v~Q~~~l--~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~~LSgGq~q  160 (262)
T 1b0u_A           84 DKNQLRLLRTRLTMVFQHFNL--WSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDE-RAQGKYPVHLSGGQQQ  160 (262)
T ss_dssp             CHHHHHHHHHHEEEECSSCCC--CTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCH-HHHTSCGGGSCHHHHH
T ss_pred             ChhhHHHHhcceEEEecCccc--CCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCc-hhhcCCcccCCHHHHH
Confidence                      38999998532  223345444322   111222    346788999999974 4 67889999999999


Q ss_pred             HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhH
Q 024529          182 RVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHD  258 (266)
Q Consensus       182 Rv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~  258 (266)
                      ||+|||||+.+|++|||||||+|||+.++..+++.|++.   +.|||+||||++++..+||++++|++|+++ ..|++++
T Consensus       161 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~  239 (262)
T 1b0u_A          161 RVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE-EEGDPEQ  239 (262)
T ss_dssp             HHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE-EEECHHH
T ss_pred             HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHH
Confidence            999999999999999999999999999999988877643   679999999999999999999999999996 5688777


Q ss_pred             HH
Q 024529          259 YK  260 (266)
Q Consensus       259 ~~  260 (266)
                      +.
T Consensus       240 ~~  241 (262)
T 1b0u_A          240 VF  241 (262)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=100.00  E-value=3.8e-52  Score=376.48  Aligned_cols=203  Identities=25%  Similarity=0.346  Sum_probs=173.0

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-------------ee
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------VR  120 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------~~  120 (266)
                      ++|+++||+++|+ +..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++++             ..
T Consensus         3 ~~l~i~~ls~~y~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~   81 (359)
T 3fvq_A            3 AALHIGHLSKSFQ-NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERR   81 (359)
T ss_dssp             CCEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSC
T ss_pred             cEEEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCC
Confidence            3699999999994 567999999999999999999999999999999999999999999998764             24


Q ss_pred             EEEEeccccCCCCCCCcHHHHHHHhCC--C----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 024529          121 IAVFSQHHVDGLDLSSNPLLYMMRCFP--G----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH  194 (266)
Q Consensus       121 i~~~~q~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~  194 (266)
                      +||++|++.  +....++.+++.....  .    ...+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|+
T Consensus        82 ig~vfQ~~~--l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~-~~~r~~~~LSGGq~QRValArAL~~~P~  158 (359)
T 3fvq_A           82 LGYLVQEGV--LFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISE-LAGRYPHELSGGQQQRAALARALAPDPE  158 (359)
T ss_dssp             CEEECTTCC--CCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGG-GTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred             EEEEeCCCc--CCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCch-HhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence            899999864  3334566666543211  1    12456888999999974 6788999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHh----hcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          195 IILLDEPSNHLDLDAVEALIQGLV----LFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       195 lllLDEPt~~LD~~~~~~l~~~l~----~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      +|||||||++||+..+..+++.+.    +.+.|+|+||||++++..+||||++|++|+++ ..|+++++..
T Consensus       159 lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~-~~g~~~el~~  228 (359)
T 3fvq_A          159 LILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRIL-QTASPHELYR  228 (359)
T ss_dssp             EEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEE-EEeCHHHHHh
Confidence            999999999999999888876543    34779999999999999999999999999997 6788887643

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=100.00  E-value=2.2e-52  Score=365.49  Aligned_cols=202  Identities=25%  Similarity=0.354  Sum_probs=173.1

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee-----------eEE
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-----------RIA  122 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-----------~i~  122 (266)
                      ++|+++|+++.|+ +..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++..           .++
T Consensus        10 ~~l~~~~l~~~~~-~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~   88 (266)
T 4g1u_C           10 ALLEASHLHYHVQ-QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRA   88 (266)
T ss_dssp             CEEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEE
T ss_pred             ceEEEEeEEEEeC-CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEE
Confidence            5899999999994 5679999999999999999999999999999999999999999999998752           489


Q ss_pred             EEeccccCCCCCCCcHHHHHHHh---C-CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHcc------C
Q 024529          123 VFSQHHVDGLDLSSNPLLYMMRC---F-PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK------K  192 (266)
Q Consensus       123 ~~~q~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~------~  192 (266)
                      |++|++..  ....++.+++...   . .....+++.++++.+++.+ ..++++.+|||||||||+|||||+.      +
T Consensus        89 ~v~q~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~  165 (266)
T 4g1u_C           89 VMRQYSEL--AFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLA-LAQRDYRVLSGGEQQRVQLARVLAQLWQPQPT  165 (266)
T ss_dssp             EECSCCCC--CSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCST-TTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCC
T ss_pred             EEecCCcc--CCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChh-HhcCCcccCCHHHHHHHHHHHHHhcccccCCC
Confidence            99998643  2334555555322   1 1234567889999999974 5678899999999999999999999      9


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhhc---C-CEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          193 PHIILLDEPSNHLDLDAVEALIQGLVLF---Q-GGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       193 p~lllLDEPt~~LD~~~~~~l~~~l~~~---~-~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      |++|||||||+|||+.++..+++.|++.   + .|||+||||++++..+||++++|++|+++ +.|+++++.
T Consensus       166 p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~-~~g~~~~~~  236 (266)
T 4g1u_C          166 PRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLV-ACGTPEEVL  236 (266)
T ss_dssp             CEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEE-EEECHHHHC
T ss_pred             CCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEE-EEcCHHHHh
Confidence            9999999999999999999988877653   3 49999999999999999999999999997 678887763

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=100.00  E-value=4.9e-52  Score=354.79  Aligned_cols=196  Identities=22%  Similarity=0.320  Sum_probs=163.9

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------------
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------  118 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------------  118 (266)
                      ++|+++|++++|+ +..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.               
T Consensus         3 ~~l~~~~l~~~y~-~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~   81 (224)
T 2pcj_A            3 EILRAENIKKVIR-GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRN   81 (224)
T ss_dssp             EEEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHH
T ss_pred             cEEEEEeEEEEEC-CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHh
Confidence            4799999999995 467999999999999999999999999999999999999999999998763               


Q ss_pred             eeEEEEeccccCCCCCCCcHHHHHHH---hCCC---CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccC
Q 024529          119 VRIAVFSQHHVDGLDLSSNPLLYMMR---CFPG---VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK  192 (266)
Q Consensus       119 ~~i~~~~q~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~  192 (266)
                      ..++|++|++..  ....++.+++..   ....   ...+++.++++.+++.+ ..++++.+|||||||||+|||||+.+
T Consensus        82 ~~i~~v~q~~~l--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~laral~~~  158 (224)
T 2pcj_A           82 RKLGFVFQFHYL--IPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGD-KLSRKPYELSGGEQQRVAIARALANE  158 (224)
T ss_dssp             HHEEEECSSCCC--CTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTT-CTTCCGGGSCHHHHHHHHHHHHTTTC
T ss_pred             CcEEEEecCccc--CCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCch-hhhCChhhCCHHHHHHHHHHHHHHcC
Confidence            249999998632  223344444321   1111   12356788999999974 56788999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCC
Q 024529          193 PHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGT  255 (266)
Q Consensus       193 p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~  255 (266)
                      |++|||||||++||+.++..+++.+++.   +.|||+||||++++ .+||++++|++|+++ +.|+
T Consensus       159 p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~-~~g~  222 (224)
T 2pcj_A          159 PILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-ELTHRTLEMKDGKVV-GEIT  222 (224)
T ss_dssp             CSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TTSSEEEEEETTEEE-EEEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCCEEEEEECCEEE-EEee
Confidence            9999999999999999999888877643   67999999999998 799999999999996 4553

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=4.4e-52  Score=361.59  Aligned_cols=205  Identities=21%  Similarity=0.274  Sum_probs=171.1

Q ss_pred             CCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee----------eE
Q 024529           52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV----------RI  121 (266)
Q Consensus        52 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~----------~i  121 (266)
                      ..++|+++||+++|+ +..+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++..          .+
T Consensus        12 ~~~~l~i~~l~~~y~-~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i   90 (256)
T 1vpl_A           12 HMGAVVVKDLRKRIG-KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI   90 (256)
T ss_dssp             --CCEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTE
T ss_pred             cCCeEEEEEEEEEEC-CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcE
Confidence            356899999999994 5679999999999999999999999999999999999999999999988742          49


Q ss_pred             EEEeccccCCCCCCCcHHHHHHHh--CCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 024529          122 AVFSQHHVDGLDLSSNPLLYMMRC--FPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI  195 (266)
Q Consensus       122 ~~~~q~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~l  195 (266)
                      +|++|++..  ....++.+++...  .....    .+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++
T Consensus        91 ~~v~q~~~l--~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~LSgGq~qRv~lAraL~~~p~l  167 (256)
T 1vpl_A           91 SYLPEEAGA--YRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGE-KIKDRVSTYSKGMVRKLLIARALMVNPRL  167 (256)
T ss_dssp             EEECTTCCC--CTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGG-GGGSBGGGCCHHHHHHHHHHHHHTTCCSE
T ss_pred             EEEcCCCCC--CCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCch-HhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence            999998642  2233444443211  11111    246788999999974 56788999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          196 ILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       196 llLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      |||||||++||+.++..+++.|.+.   +.|||+||||++++..+||++++|++|+++ +.|+++++.+
T Consensus       168 llLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~  235 (256)
T 1vpl_A          168 AILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIV-ETGTVEELKE  235 (256)
T ss_dssp             EEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEE-EEEEHHHHHH
T ss_pred             EEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEE-EecCHHHHHH
Confidence            9999999999999999988877653   579999999999999999999999999996 5688777654

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=7.4e-52  Score=357.15  Aligned_cols=202  Identities=19%  Similarity=0.247  Sum_probs=169.1

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee------------eE
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV------------RI  121 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~------------~i  121 (266)
                      ++|+++||+++|+ +..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++..            .+
T Consensus         5 ~~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i   83 (240)
T 1ji0_A            5 IVLEVQSLHVYYG-AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI   83 (240)
T ss_dssp             EEEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred             ceEEEEeEEEEEC-CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCE
Confidence            4799999999995 4579999999999999999999999999999999999999999999987741            39


Q ss_pred             EEEeccccCCCCCCCcHHHHHHHhC-C--CC--cHHHHHHHHHhcC-CCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 024529          122 AVFSQHHVDGLDLSSNPLLYMMRCF-P--GV--PEQKLRAHLGSFG-VTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI  195 (266)
Q Consensus       122 ~~~~q~~~~~~~~~~~~~~~~~~~~-~--~~--~~~~~~~~l~~~~-l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~l  195 (266)
                      +|++|++.  +....+..+++.... .  ..  ..+.+.++++.++ +.+ ..++++.+|||||||||+|||||+.+|++
T Consensus        84 ~~v~q~~~--l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~~~~LSgGq~qrv~lAraL~~~p~l  160 (240)
T 1ji0_A           84 ALVPEGRR--IFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKE-RLKQLGGTLSGGEQQMLAIGRALMSRPKL  160 (240)
T ss_dssp             EEECSSCC--CCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHT-TTTSBSSSSCHHHHHHHHHHHHHTTCCSE
T ss_pred             EEEecCCc--cCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhh-HhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence            99999863  222335555553211 1  11  1345677888884 854 56788999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          196 ILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       196 llLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      |||||||++||+.++..+++.|++.   +.|||+||||++++..+||++++|++|+++ ..|+++++.
T Consensus       161 llLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~  227 (240)
T 1ji0_A          161 LMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIV-LEGKASELL  227 (240)
T ss_dssp             EEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEE-EEEEHHHHH
T ss_pred             EEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EEcCHHHHh
Confidence            9999999999999999988887653   579999999999999999999999999996 567777653

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=100.00  E-value=7.2e-52  Score=377.08  Aligned_cols=201  Identities=23%  Similarity=0.331  Sum_probs=171.6

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------eeEEEEe
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS  125 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~i~~~~  125 (266)
                      +|+++||+++|+ +..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++++         ..++|++
T Consensus         3 ~l~~~~l~~~yg-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~Vf   81 (381)
T 3rlf_A            3 SVQLQNVTKAWG-EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVF   81 (381)
T ss_dssp             CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEEC
T ss_pred             EEEEEeEEEEEC-CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEe
Confidence            599999999994 567999999999999999999999999999999999999999999998875         3599999


Q ss_pred             ccccCCCCCCCcHHHHHHHh--CCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 024529          126 QHHVDGLDLSSNPLLYMMRC--FPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD  199 (266)
Q Consensus       126 q~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLD  199 (266)
                      |++.  +....++.+++...  .....    .+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++||||
T Consensus        82 Q~~~--l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLD  158 (381)
T 3rlf_A           82 QSYA--LYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH-LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLD  158 (381)
T ss_dssp             TTCC--CCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGG-GTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred             cCCc--CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-hhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence            9874  33334555544221  11222    356888999999974 577899999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          200 EPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       200 EPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      |||++||+..+..+.+.|++    .+.|+|+||||++++..+||+|++|++|+++ ..|+++++.
T Consensus       159 EPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~-~~g~~~~l~  222 (381)
T 3rlf_A          159 EPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVA-QVGKPLELY  222 (381)
T ss_dssp             STTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EEeCHHHHH
Confidence            99999999999888877754    3779999999999999999999999999997 578887764

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=100.00  E-value=1.4e-51  Score=372.64  Aligned_cols=206  Identities=27%  Similarity=0.363  Sum_probs=173.0

Q ss_pred             CCCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------eeE
Q 024529           51 PGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRI  121 (266)
Q Consensus        51 ~~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~i  121 (266)
                      .+.++|+++|++++|+++..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++++         ..+
T Consensus        10 ~~~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~i   89 (355)
T 1z47_A           10 HGSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNV   89 (355)
T ss_dssp             -CCEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSE
T ss_pred             CCCceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcE
Confidence            35678999999999933456899999999999999999999999999999999999999999998874         259


Q ss_pred             EEEeccccCCCCCCCcHHHHHHHh--CCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCE
Q 024529          122 AVFSQHHVDGLDLSSNPLLYMMRC--FPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI  195 (266)
Q Consensus       122 ~~~~q~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~l  195 (266)
                      +|++|++..  ....++.+++...  .....    .+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++
T Consensus        90 g~v~Q~~~l--~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~-~~~r~~~~LSGGq~QRvalArAL~~~P~l  166 (355)
T 1z47_A           90 GLVFQNYAL--FQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLES-YANRFPHELSGGQQQRVALARALAPRPQV  166 (355)
T ss_dssp             EEECGGGCC--CTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGG-GTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred             EEEecCccc--CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-HhcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence            999998642  2333454443211  11222    356888999999974 56789999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          196 ILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       196 llLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      |||||||++||+..+..+.+.|++    .+.|+|+||||++++..+||++++|++|+++ ..|+++++.
T Consensus       167 LLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~-~~g~~~~l~  234 (355)
T 1z47_A          167 LLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVE-QFGTPEEVY  234 (355)
T ss_dssp             EEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence            999999999999999988887754    3679999999999999999999999999996 568887764

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=100.00  E-value=2.1e-52  Score=367.85  Aligned_cols=205  Identities=22%  Similarity=0.329  Sum_probs=170.9

Q ss_pred             CCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-------------
Q 024529           52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------  118 (266)
Q Consensus        52 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------  118 (266)
                      ..++|+++||+++|+ +..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.             
T Consensus        18 ~~~~l~~~~l~~~y~-~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~   96 (279)
T 2ihy_A           18 SHMLIQLDQIGRMKQ-GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVR   96 (279)
T ss_dssp             -CEEEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHH
T ss_pred             CCceEEEEeEEEEEC-CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHc
Confidence            345899999999995 457999999999999999999999999999999999999999999998763             


Q ss_pred             eeEEEEeccccCCCCCCCcHHHHHHHhC-------CCC---cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHH
Q 024529          119 VRIAVFSQHHVDGLDLSSNPLLYMMRCF-------PGV---PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKI  188 (266)
Q Consensus       119 ~~i~~~~q~~~~~~~~~~~~~~~~~~~~-------~~~---~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAra  188 (266)
                      ..++|++|++...+....++.+++....       ...   ..+++.++++.+++.+ ..++++.+|||||||||+||||
T Consensus        97 ~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqkqRv~lAra  175 (279)
T 2ihy_A           97 QHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSA-KAQQYIGYLSTGEKQRVMIARA  175 (279)
T ss_dssp             TTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGG-GTTSBGGGSCHHHHHHHHHHHH
T ss_pred             CcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChh-HhcCChhhCCHHHHHHHHHHHH
Confidence            2489999986322222335555543211       011   1346788999999964 5678999999999999999999


Q ss_pred             HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEE--EEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529          189 TFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGI--LMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  259 (266)
Q Consensus       189 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~ti--iivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  259 (266)
                      |+.+|++|||||||+|||+.++..+++.|++.   +.||  |+||||++++..+||++++|++|+++ +.|+++++
T Consensus       176 L~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~  250 (279)
T 2ihy_A          176 LMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSI-QQGAVEDI  250 (279)
T ss_dssp             HHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEE-EEEEHHHH
T ss_pred             HhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEE-EECCHHHH
Confidence            99999999999999999999999988887654   6789  99999999999999999999999996 56877765

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=100.00  E-value=2.6e-52  Score=363.44  Aligned_cols=200  Identities=19%  Similarity=0.253  Sum_probs=169.2

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee------------eE
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV------------RI  121 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~------------~i  121 (266)
                      ++|+++|++++|+ +..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++..            .+
T Consensus         6 ~~l~i~~l~~~y~-~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i   84 (257)
T 1g6h_A            6 EILRTENIVKYFG-EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI   84 (257)
T ss_dssp             EEEEEEEEEEEET-TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred             cEEEEeeeEEEEC-CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence            4799999999995 4579999999999999999999999999999999999999999999987731            49


Q ss_pred             EEEeccccCCCCCCCcHHHHHHHh--C--CC-----------C----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHH
Q 024529          122 AVFSQHHVDGLDLSSNPLLYMMRC--F--PG-----------V----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSR  182 (266)
Q Consensus       122 ~~~~q~~~~~~~~~~~~~~~~~~~--~--~~-----------~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqR  182 (266)
                      +|++|++..  ....++.+++...  .  ..           .    ..+++.++++.+++.+ ..++++.+||||||||
T Consensus        85 ~~v~q~~~l--~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkQr  161 (257)
T 1g6h_A           85 VRTFQTPQP--LKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSH-LYDRKAGELSGGQMKL  161 (257)
T ss_dssp             EECCCCCGG--GGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGG-GTTSBGGGSCHHHHHH
T ss_pred             EEEccCCcc--CCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCch-hhCCCchhCCHHHHHH
Confidence            999998632  2223455544321  1  01           1    1346788999999974 5678999999999999


Q ss_pred             HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhH
Q 024529          183 VAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHD  258 (266)
Q Consensus       183 v~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~  258 (266)
                      |+|||||+.+|++|||||||+|||+.++..+++.|++.   +.|||+||||++++..+||++++|++|+++ +.|++++
T Consensus       162 v~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~  239 (257)
T 1g6h_A          162 VEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQII-AEGRGEE  239 (257)
T ss_dssp             HHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEE-EEEESHH
T ss_pred             HHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EEeCHHH
Confidence            99999999999999999999999999999988887653   679999999999999999999999999996 5677777

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=100.00  E-value=5.6e-51  Score=369.51  Aligned_cols=201  Identities=21%  Similarity=0.281  Sum_probs=172.1

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------eeEEEEe
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS  125 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~i~~~~  125 (266)
                      +|+++|++++|+ +..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.+++.         ..++|++
T Consensus         3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~   81 (359)
T 2yyz_A            3 SIRVVNLKKYFG-KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVF   81 (359)
T ss_dssp             CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEEC
T ss_pred             EEEEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEe
Confidence            589999999994 557899999999999999999999999999999999999999999998874         2599999


Q ss_pred             ccccCCCCCCCcHHHHHHHhC--CCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 024529          126 QHHVDGLDLSSNPLLYMMRCF--PGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD  199 (266)
Q Consensus       126 q~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLD  199 (266)
                      |++..  ....++.+++....  ....    .+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++||||
T Consensus        82 Q~~~l--~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLD  158 (359)
T 2yyz_A           82 QNYAL--YPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDN-LLDRKPTQLSGGQQQRVALARALVKQPKVLLFD  158 (359)
T ss_dssp             SSCCC--CTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGG-GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             cCccc--CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence            98642  33445666654321  1222    246888999999974 567899999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          200 EPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       200 EPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      |||++||+..+..+.+.|++.    +.|+|+||||++++..+||++++|++|+++ ..|+++++.
T Consensus       159 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~-~~g~~~~l~  222 (359)
T 2yyz_A          159 EPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLV-QYGTPDEVY  222 (359)
T ss_dssp             STTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence            999999999999888877543    679999999999999999999999999996 568887764

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=100.00  E-value=3.8e-51  Score=357.72  Aligned_cols=205  Identities=25%  Similarity=0.411  Sum_probs=171.8

Q ss_pred             cEEEEeeEEEcC-CC---CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee--------eEE
Q 024529           55 IISFSDASFGYP-GG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV--------RIA  122 (266)
Q Consensus        55 ~l~~~~l~~~y~-~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~--------~i~  122 (266)
                      +|+++|++++|+ ++   +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++..        .++
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~   81 (266)
T 2yz2_A            2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG   81 (266)
T ss_dssp             CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE
T ss_pred             EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE
Confidence            689999999995 23   468999999999999999999999999999999999999999999998742        499


Q ss_pred             EEeccccCCCCCCCcHHHHHHHhC----C-CCcHHHHHHHHHhcCCCc-ccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 024529          123 VFSQHHVDGLDLSSNPLLYMMRCF----P-GVPEQKLRAHLGSFGVTG-NLALQPMYTLSGGQKSRVAFAKITFKKPHII  196 (266)
Q Consensus       123 ~~~q~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGqkqRv~lAral~~~p~ll  196 (266)
                      |++|++...+ ...+..+++....    . ....+++.++++.+++.. ...++++.+|||||||||+|||||+.+|++|
T Consensus        82 ~v~q~~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ll  160 (266)
T 2yz2_A           82 IAFQYPEDQF-FAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDIL  160 (266)
T ss_dssp             EECSSGGGGC-CCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred             EEeccchhhc-CCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence            9999852111 2345555543321    1 123567889999999971 3467889999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          197 LLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       197 lLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      ||||||++||+.++..+++.|++.   +.|||+||||++++..+||++++|++|+++ ..|+.+++..
T Consensus       161 lLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~  227 (266)
T 2yz2_A          161 ILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKV-FDGTRMEFLE  227 (266)
T ss_dssp             EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEE-EEEEHHHHHH
T ss_pred             EEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHhc
Confidence            999999999999999988887653   579999999999999999999999999996 5788777643

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=100.00  E-value=5.6e-51  Score=354.18  Aligned_cols=198  Identities=24%  Similarity=0.350  Sum_probs=167.3

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCC
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDL  134 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~  134 (266)
                      +|+++|++++|+++..+|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|...  ..++|++|++...  .
T Consensus         4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~--~~i~~v~q~~~~~--~   79 (253)
T 2nq2_C            4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVY--QSIGFVPQFFSSP--F   79 (253)
T ss_dssp             EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEEC--SCEEEECSCCCCS--S
T ss_pred             eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEe--ccEEEEcCCCccC--C
Confidence            69999999999525679999999999999999999999999999999999999999999843  4699999986422  2


Q ss_pred             CCcHHHHHHHhC----C-----C-CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCC
Q 024529          135 SSNPLLYMMRCF----P-----G-VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNH  204 (266)
Q Consensus       135 ~~~~~~~~~~~~----~-----~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~  204 (266)
                      ..++.+++....    .     . ...+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++|||||||+|
T Consensus        80 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~  158 (253)
T 2nq2_C           80 AYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTH-LAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSA  158 (253)
T ss_dssp             CCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGG-GTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTT
T ss_pred             CCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChH-HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence            345555543211    0     1 12356788999999974 56788999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529          205 LDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  259 (266)
Q Consensus       205 LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  259 (266)
                      ||+.++..+++.|.+.    +.|||+||||++++..+||++++|++|+ + +.|+++++
T Consensus       159 LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~-~~g~~~~~  215 (253)
T 2nq2_C          159 LDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-F-KFGETRNI  215 (253)
T ss_dssp             SCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-E-EEEEHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-E-ecCCHHHH
Confidence            9999999988887653    6799999999999999999999999999 5 56777665

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=100.00  E-value=8.4e-51  Score=368.72  Aligned_cols=201  Identities=25%  Similarity=0.315  Sum_probs=170.8

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------eeEEEEe
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS  125 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~i~~~~  125 (266)
                      +|+++|++++|+ +..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++++         ..++|++
T Consensus         3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~   81 (362)
T 2it1_A            3 EIKLENIVKKFG-NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVF   81 (362)
T ss_dssp             CEEEEEEEEESS-SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEEC
T ss_pred             EEEEEeEEEEEC-CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEe
Confidence            599999999994 567999999999999999999999999999999999999999999998874         2599999


Q ss_pred             ccccCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 024529          126 QHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD  199 (266)
Q Consensus       126 q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLD  199 (266)
                      |++..  ....++.+++...  ....    ..+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++||||
T Consensus        82 Q~~~l--~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLD  158 (362)
T 2it1_A           82 QNWAL--YPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDK-LLNRYPWQLSGGQQQRVAIARALVKEPEVLLLD  158 (362)
T ss_dssp             TTCCC--CTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTT-CTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             cCccc--CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-HhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence            98642  2333454444221  1112    1356788999999974 567899999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          200 EPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       200 EPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      |||++||+..+..+.+.|++.    +.|+|+||||++++..+||++++|++|+++ ..|+++++.
T Consensus       159 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~-~~g~~~~~~  222 (362)
T 2it1_A          159 EPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEIL-QVGTPDEVY  222 (362)
T ss_dssp             SGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred             CccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence            999999999999888877543    679999999999999999999999999996 568887764

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=100.00  E-value=5.3e-51  Score=368.45  Aligned_cols=200  Identities=26%  Similarity=0.300  Sum_probs=169.6

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee---------eEEEEe
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV---------RIAVFS  125 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~---------~i~~~~  125 (266)
                      ||+++|++++|+ +. +|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++++.         .++|++
T Consensus         1 ml~~~~l~~~y~-~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~   78 (348)
T 3d31_A            1 MIEIESLSRKWK-NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVY   78 (348)
T ss_dssp             CEEEEEEEEECS-SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEEC
T ss_pred             CEEEEEEEEEEC-CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEe
Confidence            589999999995 45 9999999999999999999999999999999999999999999998742         489999


Q ss_pred             ccccCCCCCCCcHHHHHHH---hCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCC
Q 024529          126 QHHVDGLDLSSNPLLYMMR---CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS  202 (266)
Q Consensus       126 q~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt  202 (266)
                      |++..  ....++.+++..   .......+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++|||||||
T Consensus        79 Q~~~l--~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~  155 (348)
T 3d31_A           79 QNYSL--FPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEH-LLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPL  155 (348)
T ss_dssp             TTCCC--CTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTT-TTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSS
T ss_pred             cCccc--CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCch-HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence            98642  223344444321   111112277889999999974 567899999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          203 NHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       203 ~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      ++||+..+..+.+.|++.    +.|+|+||||++++..+||++++|++|+++ ..|+++++.
T Consensus       156 s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~-~~g~~~~~~  216 (348)
T 3d31_A          156 SALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLI-QVGKPEEIF  216 (348)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEE-EEECHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHHH
Confidence            999999999888877543    679999999999999999999999999996 568877764

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=100.00  E-value=8.2e-51  Score=350.49  Aligned_cols=198  Identities=25%  Similarity=0.346  Sum_probs=167.5

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------eeEEEEe
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS  125 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~i~~~~  125 (266)
                      ||+++|++++|+ +  +|+|+||+|++ |+++|+||||||||||+|+|+|+++|++|+|.+++.         ..++|++
T Consensus         1 ml~~~~l~~~y~-~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~   76 (240)
T 2onk_A            1 MFLKVRAEKRLG-N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVP   76 (240)
T ss_dssp             CCEEEEEEEEET-T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCC
T ss_pred             CEEEEEEEEEeC-C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEc
Confidence            478999999994 3  49999999999 999999999999999999999999999999998874         2589999


Q ss_pred             ccccCCCCCCCcHHHHHHHhCC--C--CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 024529          126 QHHVDGLDLSSNPLLYMMRCFP--G--VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP  201 (266)
Q Consensus       126 q~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEP  201 (266)
                      |++.  +....+..+++.....  .  ...+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++||||||
T Consensus        77 q~~~--l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEP  153 (240)
T 2onk_A           77 QDYA--LFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAH-LLDRKPARLSGGERQRVALARALVIQPRLLLLDEP  153 (240)
T ss_dssp             SSCC--CCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTT-TTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEEST
T ss_pred             CCCc--cCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHH-HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            9863  2223355555533211  1  12456788999999974 56788999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          202 SNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       202 t~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      |+|||+.++..+++.+.+.    +.|||+||||++++..+||++++|++|+++ ..|+++++.
T Consensus       154 ts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~  215 (240)
T 2onk_A          154 LSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIV-EKGKLKELF  215 (240)
T ss_dssp             TSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred             cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHHH
Confidence            9999999999988877643    679999999999999999999999999996 578887764

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=100.00  E-value=6.9e-51  Score=368.69  Aligned_cols=201  Identities=24%  Similarity=0.322  Sum_probs=171.2

Q ss_pred             cEEEEeeEEEcCCCCc--ceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe--------------
Q 024529           55 IISFSDASFGYPGGPI--LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------  118 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~--~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------  118 (266)
                      +|+++|++++|+ +..  +|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++++              
T Consensus         3 ~l~i~~l~~~y~-~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~   81 (353)
T 1oxx_K            3 RIIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED   81 (353)
T ss_dssp             CEEEEEEEEEEG-GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred             EEEEEeEEEEEC-CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhh
Confidence            699999999994 456  899999999999999999999999999999999999999999988763              


Q ss_pred             eeEEEEeccccCCCCCCCcHHHHHHHhC--CCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccC
Q 024529          119 VRIAVFSQHHVDGLDLSSNPLLYMMRCF--PGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK  192 (266)
Q Consensus       119 ~~i~~~~q~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~  192 (266)
                      ..++|++|++.  +....++.+++....  ....    .+++.++++.+++.+ ..++++.+|||||||||+|||||+.+
T Consensus        82 r~ig~v~Q~~~--l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~~~~LSGGq~QRvalAraL~~~  158 (353)
T 1oxx_K           82 RKIGMVFQTWA--LYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHH-VLNHFPRELSGAQQQRVALARALVKD  158 (353)
T ss_dssp             SCEEEEETTSC--CCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGG-GTTSCGGGSCHHHHHHHHHHHHHTTC
T ss_pred             CCEEEEeCCCc--cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-HhcCChhhCCHHHHHHHHHHHHHHhC
Confidence            24899999864  233445666554321  1222    356788999999974 56789999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          193 PHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       193 p~lllLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      |++|||||||++||+..+..+.+.|++    .+.|+|+||||++++..+||++++|++|+++ ..|+++++.
T Consensus       159 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~-~~g~~~~l~  229 (353)
T 1oxx_K          159 PSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLV-QVGKPEDLY  229 (353)
T ss_dssp             CSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred             CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence            999999999999999999988887754    3679999999999999999999999999996 568887764

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=100.00  E-value=1.8e-50  Score=368.12  Aligned_cols=201  Identities=24%  Similarity=0.317  Sum_probs=169.9

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------------e
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------V  119 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------------~  119 (266)
                      +|+++|++++|+ +..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++++               .
T Consensus         3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r   81 (372)
T 1g29_1            3 GVRLVDVWKVFG-EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDR   81 (372)
T ss_dssp             EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGS
T ss_pred             EEEEEeEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHC
Confidence            589999999994 557999999999999999999999999999999999999999999998763               2


Q ss_pred             eEEEEeccccCCCCCCCcHHHHHHHh--CCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCC
Q 024529          120 RIAVFSQHHVDGLDLSSNPLLYMMRC--FPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP  193 (266)
Q Consensus       120 ~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p  193 (266)
                      .++|++|++..  ....++.+++...  .....    .+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|
T Consensus        82 ~ig~v~Q~~~l--~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~r~~~~LSGGq~QRvalArAL~~~P  158 (372)
T 1g29_1           82 DIAMVFQSYAL--YPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTE-LLNRKPRELSGGQRQRVALGRAIVRKP  158 (372)
T ss_dssp             SEEEECSCCCC--CTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGG-GTTCCGGGSCHHHHHHHHHHHHHHTCC
T ss_pred             CEEEEeCCCcc--CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch-HhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence            48999998642  2334454443221  11222    356788999999974 567899999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          194 HIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       194 ~lllLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      ++|||||||++||+..+..+.+.|++    .+.|+|+||||++++..+||++++|++|+++ ..|+++++.
T Consensus       159 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~-~~g~~~~l~  228 (372)
T 1g29_1          159 QVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQ-QVGSPDEVY  228 (372)
T ss_dssp             SEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred             CEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEE-EeCCHHHHH
Confidence            99999999999999999988887754    3679999999999999999999999999996 568887764

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=100.00  E-value=1.7e-50  Score=359.40  Aligned_cols=203  Identities=26%  Similarity=0.375  Sum_probs=171.4

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEE
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA  122 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~  122 (266)
                      ..|+++||+|+|+++..+|+||||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.           ..++
T Consensus        52 ~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~  131 (306)
T 3nh6_A           52 GRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIG  131 (306)
T ss_dssp             CCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEE
T ss_pred             CeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceE
Confidence            46999999999975667999999999999999999999999999999999999999999999875           2599


Q ss_pred             EEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccc----------ccCCCCCCChHHHHHHHHHHHHccC
Q 024529          123 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKITFKK  192 (266)
Q Consensus       123 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkqRv~lAral~~~  192 (266)
                      |++|++..   +..+..+++.........+++.++++.+++.+..          ...++.+|||||||||+|||||+.+
T Consensus       132 ~v~Q~~~l---f~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~  208 (306)
T 3nh6_A          132 VVPQDTVL---FNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKA  208 (306)
T ss_dssp             EECSSCCC---CSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHC
T ss_pred             EEecCCcc---CcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhC
Confidence            99998742   2346777765433334566677777776664322          2345679999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          193 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       193 p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      |+||||||||++||+.+...+.+.|.+.  +.|+|+||||++.+.. ||+|++|++|+++ ..|+++++.+
T Consensus       209 p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv-~~G~~~el~~  277 (306)
T 3nh6_A          209 PGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN-ADQILVIKDGCIV-ERGRHEALLS  277 (306)
T ss_dssp             CSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT-CSEEEEEETTEEE-EEECHHHHHH
T ss_pred             CCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc-CCEEEEEECCEEE-EECCHHHHHh
Confidence            9999999999999999999998888764  5799999999999986 9999999999997 6788887654

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=100.00  E-value=2.8e-50  Score=348.65  Aligned_cols=201  Identities=24%  Similarity=0.423  Sum_probs=166.9

Q ss_pred             cEEEEeeEEEcC-CCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEE
Q 024529           55 IISFSDASFGYP-GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA  122 (266)
Q Consensus        55 ~l~~~~l~~~y~-~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~  122 (266)
                      -++++||+++|+ ++..+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.           ..++
T Consensus         7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~   86 (247)
T 2ff7_A            7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG   86 (247)
T ss_dssp             EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred             ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEE
Confidence            489999999994 3457999999999999999999999999999999999999999999998874           2499


Q ss_pred             EEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccc----------ccCCCCCCChHHHHHHHHHHHHccC
Q 024529          123 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKITFKK  192 (266)
Q Consensus       123 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkqRv~lAral~~~  192 (266)
                      |++|++.. +  ..++.+++.........+++.++++.+++.+..          .++++.+|||||||||+|||||+.+
T Consensus        87 ~v~Q~~~l-~--~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~  163 (247)
T 2ff7_A           87 VVLQDNVL-L--NRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNN  163 (247)
T ss_dssp             EECSSCCC-T--TSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTC
T ss_pred             EEeCCCcc-c--cccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcC
Confidence            99998642 2  236666664322233456677778877775322          2345689999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          193 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       193 p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      |++|||||||++||+.++..+++.|.+.  +.|||+||||++.+. .||++++|++|+++ ..|+++++.
T Consensus       164 p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~l~  231 (247)
T 2ff7_A          164 PKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK-NADRIIVMEKGKIV-EQGKHKELL  231 (247)
T ss_dssp             CSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT-TSSEEEEEETTEEE-EEECHHHHH
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH-hCCEEEEEECCEEE-EECCHHHHH
Confidence            9999999999999999999998888754  679999999999987 49999999999997 567776653

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=100.00  E-value=1.6e-50  Score=368.09  Aligned_cols=201  Identities=21%  Similarity=0.298  Sum_probs=169.4

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------eeEEEEe
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS  125 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~i~~~~  125 (266)
                      +|+++||+++|+ +..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++++         ..++|++
T Consensus        11 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~   89 (372)
T 1v43_A           11 EVKLENLTKRFG-NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF   89 (372)
T ss_dssp             CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEE
T ss_pred             eEEEEEEEEEEC-CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEe
Confidence            599999999994 556899999999999999999999999999999999999999999998874         2599999


Q ss_pred             ccccCCCCCCCcHHHHHHHhCC--CCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 024529          126 QHHVDGLDLSSNPLLYMMRCFP--GVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD  199 (266)
Q Consensus       126 q~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLD  199 (266)
                      |++..  ....++.+++.....  ...    .+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++||||
T Consensus        90 Q~~~l--~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLD  166 (372)
T 1v43_A           90 QSYAV--WPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEE-LLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMD  166 (372)
T ss_dssp             C--------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGG-GTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEE
T ss_pred             cCccc--CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            98642  334456666543211  122    346788999999974 567899999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          200 EPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       200 EPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      |||++||+..+..+.+.|++.    +.|+|+||||++++..+||++++|++|+++ ..|+++++.
T Consensus       167 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~-~~g~~~~l~  230 (372)
T 1v43_A          167 EPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLL-QIGSPTEVY  230 (372)
T ss_dssp             STTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred             CCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence            999999999999888877543    679999999999999999999999999996 568887764

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=100.00  E-value=1.4e-50  Score=353.24  Aligned_cols=199  Identities=19%  Similarity=0.324  Sum_probs=171.2

Q ss_pred             cEEEEeeEEEcCCC---CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe--------eeEE-
Q 024529           55 IISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------VRIA-  122 (266)
Q Consensus        55 ~l~~~~l~~~y~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------~~i~-  122 (266)
                      ||+++|++++|++.   +.+|+++||+|+ |++++|+||||||||||+|+|+|++ |++|+|.+++.        ..++ 
T Consensus         1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~   78 (263)
T 2pjz_A            1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYST   78 (263)
T ss_dssp             CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEE
T ss_pred             CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEE
Confidence            58999999999531   569999999999 9999999999999999999999999 99999998874        2589 


Q ss_pred             EEeccccCCCCCCCcHHHHHHHh--CCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 024529          123 VFSQHHVDGLDLSSNPLLYMMRC--FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE  200 (266)
Q Consensus       123 ~~~q~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDE  200 (266)
                      |++|++..    ..+..+++...  ......+++.++++.+++.....++++.+||||||||++|||||+.+|++|||||
T Consensus        79 ~v~Q~~~l----~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDE  154 (263)
T 2pjz_A           79 NLPEAYEI----GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDE  154 (263)
T ss_dssp             CCGGGSCT----TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred             EeCCCCcc----CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence            99998642    34554444221  1134567789999999997235678899999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcC-EEEEEeCCeEEecCCChhHHH
Q 024529          201 PSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVE-ELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       201 Pt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d-~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      ||++||+.++..+++.|++...|||+||||++++..+|| ++++|++|+++ ..|+++++.
T Consensus       155 Pts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d~~i~~l~~G~i~-~~g~~~~l~  214 (263)
T 2pjz_A          155 PFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKEYKAYFLVGNRLQ-GPISVSELL  214 (263)
T ss_dssp             TTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCTTSEEEEEETTEEE-EEEEHHHHH
T ss_pred             CccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcCceEEEEECCEEE-EecCHHHHH
Confidence            999999999999999998875599999999999999999 99999999996 678888764

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=100.00  E-value=1.4e-50  Score=349.69  Aligned_cols=202  Identities=22%  Similarity=0.355  Sum_probs=167.2

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEEE
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV  123 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~  123 (266)
                      ||+++|++++|+++..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.           ..++|
T Consensus         1 ml~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~   80 (243)
T 1mv5_A            1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF   80 (243)
T ss_dssp             CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred             CEEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence            4899999999954457999999999999999999999999999999999999999999998763           24899


Q ss_pred             EeccccCCCCCCCcHHHHHHHh-CCCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHHccC
Q 024529          124 FSQHHVDGLDLSSNPLLYMMRC-FPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFKK  192 (266)
Q Consensus       124 ~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqRv~lAral~~~  192 (266)
                      ++|++.. +  ..+..+++... ......+++.++++.+++.+...          ++++.+|||||||||+|||||+.+
T Consensus        81 v~q~~~l-~--~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~  157 (243)
T 1mv5_A           81 VSQDSAI-M--AGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRN  157 (243)
T ss_dssp             ECCSSCC-C--CEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHC
T ss_pred             EcCCCcc-c--cccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcC
Confidence            9998642 2  23566655322 12344567888888888864322          235679999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          193 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       193 p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      |++|||||||++||+.++..+++.|.+.  +.|||+||||++++. .||++++|++|+++ ..|+++++..
T Consensus       158 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~~~  226 (243)
T 1mv5_A          158 PKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV-DADKIYFIEKGQIT-GSGKHNELVA  226 (243)
T ss_dssp             CSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH-HCSEEEEEETTEEC-CCSCHHHHHH
T ss_pred             CCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHH-hCCEEEEEECCEEE-EeCCHHHHHh
Confidence            9999999999999999888888777653  679999999999886 59999999999996 6788877643

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=100.00  E-value=3e-50  Score=352.17  Aligned_cols=204  Identities=21%  Similarity=0.353  Sum_probs=166.5

Q ss_pred             CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCC--CCCCceEEEEcCee-----------
Q 024529           53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE--LQPSSGTVFRSAKV-----------  119 (266)
Q Consensus        53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~~~~-----------  119 (266)
                      .++|+++||+++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+  ++|++|+|.+++..           
T Consensus        18 ~~~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~   96 (267)
T 2zu0_C           18 SHMLSIKDLHVSVE-DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG   96 (267)
T ss_dssp             --CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred             CceEEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence            45799999999994 56799999999999999999999999999999999999  47899999988742           


Q ss_pred             -eEEEEeccccCCCCCCCcHHHHHHH---------hCCCCc----HHHHHHHHHhcCCCcccccCCCC-CCChHHHHHHH
Q 024529          120 -RIAVFSQHHVDGLDLSSNPLLYMMR---------CFPGVP----EQKLRAHLGSFGVTGNLALQPMY-TLSGGQKSRVA  184 (266)
Q Consensus       120 -~i~~~~q~~~~~~~~~~~~~~~~~~---------~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~-~LSgGqkqRv~  184 (266)
                       .++|++|++...  ...+..+++..         ......    .+++.++++.+++.....++++. +|||||||||+
T Consensus        97 ~~i~~v~Q~~~l~--~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~  174 (267)
T 2zu0_C           97 EGIFMAFQYPVEI--PGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRND  174 (267)
T ss_dssp             HTEEEECSSCCCC--TTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHH
T ss_pred             CCEEEEccCcccc--ccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHH
Confidence             389999986422  22233332211         111111    24678899999996445667776 59999999999


Q ss_pred             HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhh-cCEEEEEeCCeEEecCCChhHHH
Q 024529          185 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGS-VEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       185 lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~-~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      |||||+.+|+||||||||++||+.++..+++.|++.   +.|||+||||++++..+ ||++++|++|+++ ..|+++++.
T Consensus       175 iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~  253 (267)
T 2zu0_C          175 ILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIV-KSGDFTLVK  253 (267)
T ss_dssp             HHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEE-EEECTTHHH
T ss_pred             HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEE-EEcCHHHHh
Confidence            999999999999999999999999999999998765   46999999999999876 9999999999996 578877764

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=100.00  E-value=2.3e-49  Score=347.27  Aligned_cols=202  Identities=24%  Similarity=0.388  Sum_probs=165.8

Q ss_pred             CCcEEEEeeEEEcCC--CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee-----------
Q 024529           53 PPIISFSDASFGYPG--GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-----------  119 (266)
Q Consensus        53 ~~~l~~~~l~~~y~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-----------  119 (266)
                      ..+|+++||++.|++  ...+|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++..           
T Consensus        14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~   93 (271)
T 2ixe_A           14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT   93 (271)
T ss_dssp             CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred             CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence            357999999999964  2569999999999999999999999999999999999999999999998742           


Q ss_pred             eEEEEeccccCCCCCCCcHHHHHHHhCCCCcH-H---------HHHHHHHhc--CCCcccccCCCCCCChHHHHHHHHHH
Q 024529          120 RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPE-Q---------KLRAHLGSF--GVTGNLALQPMYTLSGGQKSRVAFAK  187 (266)
Q Consensus       120 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-~---------~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqRv~lAr  187 (266)
                      .++|++|++.. +  ..++.+++......... .         .+.++++.+  ++.. ..++++.+|||||||||+|||
T Consensus        94 ~i~~v~Q~~~l-~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~-~~~~~~~~LSgGq~QRv~lAr  169 (271)
T 2ixe_A           94 QVAAVGQEPLL-F--GRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDT-EVGETGNQLSGGQRQAVALAR  169 (271)
T ss_dssp             HEEEECSSCCC-C--SSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGS-BCCGGGTTSCHHHHHHHHHHH
T ss_pred             cEEEEecCCcc-c--cccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhh-hhcCCcCCCCHHHHHHHHHHH
Confidence            49999998642 2  23666666432211111 1         123456666  5643 456788999999999999999


Q ss_pred             HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          188 ITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       188 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      ||+.+|+||||||||++||+.++..+++.|.+.    +.|||+||||++++.. ||++++|++|+++ ..|+++++.
T Consensus       170 aL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~l~~G~i~-~~g~~~~l~  244 (271)
T 2ixe_A          170 ALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHILFLKEGSVC-EQGTHLQLM  244 (271)
T ss_dssp             HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEEEETTEEE-EEECHHHHH
T ss_pred             HHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEEEECCEEE-EECCHHHHH
Confidence            999999999999999999999999999988764    4699999999999875 9999999999996 568877764

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=100.00  E-value=4.5e-49  Score=337.51  Aligned_cols=199  Identities=24%  Similarity=0.418  Sum_probs=161.4

Q ss_pred             CcEEEEeeEEEcCC-CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCC
Q 024529           54 PIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGL  132 (266)
Q Consensus        54 ~~l~~~~l~~~y~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~  132 (266)
                      .+|+++|++++|++ ++.+|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++  .++|++|++.. +
T Consensus         5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g--~i~~v~q~~~~-~   81 (229)
T 2pze_A            5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--RISFCSQFSWI-M   81 (229)
T ss_dssp             EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS--CEEEECSSCCC-C
T ss_pred             ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC--EEEEEecCCcc-c
Confidence            37999999999963 46799999999999999999999999999999999999999999999987  58999998642 2


Q ss_pred             CCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccc----------ccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCC
Q 024529          133 DLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS  202 (266)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt  202 (266)
                        ..+..+++.... ........+.++.+++.+..          .++++.+|||||||||+|||||+.+|++|||||||
T Consensus        82 --~~tv~enl~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPt  158 (229)
T 2pze_A           82 --PGTIKENIIFGV-SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF  158 (229)
T ss_dssp             --SBCHHHHHHTTS-CCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred             --CCCHHHHhhccC-CcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcc
Confidence              236666654321 12233344455555553211          12346899999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHH-hhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          203 NHLDLDAVEALIQGL-VLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       203 ~~LD~~~~~~l~~~l-~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      ++||+.++..+++.+ .+.  +.|||+||||++++. .||++++|++|+++ ..|+++++.
T Consensus       159 s~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~~  217 (229)
T 2pze_A          159 GYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSY-FYGTFSELQ  217 (229)
T ss_dssp             TTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HCSEEEEEETTEEE-EEECHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH-hCCEEEEEECCEEE-EECCHHHHH
Confidence            999999999999864 333  569999999999986 59999999999996 578877764

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=100.00  E-value=3.2e-50  Score=348.91  Aligned_cols=199  Identities=21%  Similarity=0.307  Sum_probs=160.5

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCC--CCCCceEEEEcCee------------e
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE--LQPSSGTVFRSAKV------------R  120 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--~~p~~G~i~~~~~~------------~  120 (266)
                      +|+++||+++|+ +..+|+|+||+|++||+++|+||||||||||+|+|+|+  ++|++|+|.+++..            .
T Consensus         3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~   81 (250)
T 2d2e_A            3 QLEIRDLWASID-GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKG   81 (250)
T ss_dssp             EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTT
T ss_pred             eEEEEeEEEEEC-CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCc
Confidence            699999999995 46799999999999999999999999999999999998  78999999988742            2


Q ss_pred             EEEEeccccCCCCCCCcHHHHHHH-----hCCCC----cHHHHHHHHHhcCCCcccccCCCCC-CChHHHHHHHHHHHHc
Q 024529          121 IAVFSQHHVDGLDLSSNPLLYMMR-----CFPGV----PEQKLRAHLGSFGVTGNLALQPMYT-LSGGQKSRVAFAKITF  190 (266)
Q Consensus       121 i~~~~q~~~~~~~~~~~~~~~~~~-----~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~-LSgGqkqRv~lAral~  190 (266)
                      ++|++|++...  ...+..+++..     .....    ..+++.++++.+++.....++++.+ |||||||||+|||||+
T Consensus        82 i~~v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~  159 (250)
T 2d2e_A           82 LFLAFQYPVEV--PGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLV  159 (250)
T ss_dssp             BCCCCCCCC-C--CSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHH
T ss_pred             EEEeccCCccc--cCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHH
Confidence            78899986422  22233333211     11011    1346778999999953456788898 9999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhh-cCEEEEEeCCeEEecCCChh
Q 024529          191 KKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGS-VEELWVVSEGKATPFHGTFH  257 (266)
Q Consensus       191 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~-~d~i~~l~~G~i~~~~g~~~  257 (266)
                      .+|++|||||||++||+.++..+++.|++.   +.|||+||||++++..+ ||++++|++|+++ ..|+++
T Consensus       160 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~-~~g~~~  229 (250)
T 2d2e_A          160 LEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVV-ATGGPE  229 (250)
T ss_dssp             HCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEE-EEESHH
T ss_pred             cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEE-EEeCHH
Confidence            999999999999999999999999888764   46999999999999888 5999999999997 567766

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=100.00  E-value=4.3e-49  Score=341.43  Aligned_cols=195  Identities=25%  Similarity=0.337  Sum_probs=167.3

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee-----------eEEE
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-----------RIAV  123 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-----------~i~~  123 (266)
                      +|+++|++++     .+|+|+||+|++||+++|+||||||||||+|+|+|+++|+ |+|.+++..           .++|
T Consensus         4 ~l~~~~l~~~-----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~   77 (249)
T 2qi9_C            4 VMQLQDVAES-----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAY   77 (249)
T ss_dssp             EEEEEEEEET-----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEE
T ss_pred             EEEEEceEEE-----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEE
Confidence            6999999986     4899999999999999999999999999999999999999 999998742           4999


Q ss_pred             EeccccCCCCCCCcHHHHHHHhC-CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCC-------E
Q 024529          124 FSQHHVDGLDLSSNPLLYMMRCF-PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH-------I  195 (266)
Q Consensus       124 ~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~-------l  195 (266)
                      ++|++..  ....++.+++.... .....+++.++++.+++.+ ..++++.+||||||||++|||||+.+|+       +
T Consensus        78 v~q~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~l  154 (249)
T 2qi9_C           78 LSQQQTP--PFATPVWHYLTLHQHDKTRTELLNDVAGALALDD-KLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQL  154 (249)
T ss_dssp             ECSCCCC--CTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGG-GTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCE
T ss_pred             ECCCCcc--CCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChh-HhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeE
Confidence            9998642  23345666654321 1123667889999999974 5678899999999999999999999999       9


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529          196 ILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  259 (266)
Q Consensus       196 llLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  259 (266)
                      |||||||+|||+.++..+.+.|++.   +.|||+||||++++..+||++++|++|+++ +.|+++++
T Consensus       155 llLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~  220 (249)
T 2qi9_C          155 LLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKML-ASGRREEV  220 (249)
T ss_dssp             EEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEE-EEEEHHHH
T ss_pred             EEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence            9999999999999999988887654   579999999999999999999999999996 56777765

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=100.00  E-value=1.8e-49  Score=341.57  Aligned_cols=198  Identities=22%  Similarity=0.350  Sum_probs=160.6

Q ss_pred             cEEEEeeEEEcCC-CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCC
Q 024529           55 IISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD  133 (266)
Q Consensus        55 ~l~~~~l~~~y~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~  133 (266)
                      +|+++|++++|++ +..+|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++  .++|++|++.  + 
T Consensus         3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g--~i~~v~Q~~~--~-   77 (237)
T 2cbz_A            3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG--SVAYVPQQAW--I-   77 (237)
T ss_dssp             CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS--CEEEECSSCC--C-
T ss_pred             eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC--EEEEEcCCCc--C-
Confidence            5899999999953 45799999999999999999999999999999999999999999999988  5999999863  2 


Q ss_pred             CCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCc----------ccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 024529          134 LSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTG----------NLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN  203 (266)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~  203 (266)
                      ...+..+++.... ....+...++++.+++.+          ...++++.+|||||||||+|||||+.+|++|||||||+
T Consensus        78 ~~~tv~enl~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts  156 (237)
T 2cbz_A           78 QNDSLRENILFGC-QLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLS  156 (237)
T ss_dssp             CSEEHHHHHHTTS-CCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTT
T ss_pred             CCcCHHHHhhCcc-ccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence            2445666654321 111222333333333311          12357789999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHh---h--cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          204 HLDLDAVEALIQGLV---L--FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       204 ~LD~~~~~~l~~~l~---~--~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      +||+.++..+++.+.   +  .+.|||+||||++++. .||++++|++|+++ ..|+++++.
T Consensus       157 ~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~~  216 (237)
T 2cbz_A          157 AVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP-QVDVIIVMSGGKIS-EMGSYQELL  216 (237)
T ss_dssp             TSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG-GSSEEEEEETTEEE-EEECHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH-hCCEEEEEeCCEEE-EeCCHHHHh
Confidence            999999999999883   2  2569999999999986 69999999999996 578887764

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=100.00  E-value=1e-48  Score=341.26  Aligned_cols=201  Identities=25%  Similarity=0.356  Sum_probs=166.0

Q ss_pred             CcEEEEeeEEEcCCC--CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------ee
Q 024529           54 PIISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR  120 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~  120 (266)
                      .+|+++||+++|++.  ..+|+|+||+|++|++++|+||||||||||+|+|+|+++| +|+|.+++.           ..
T Consensus        16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~   94 (260)
T 2ghi_A           16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI   94 (260)
T ss_dssp             CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred             CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence            469999999999643  4689999999999999999999999999999999999987 899998874           24


Q ss_pred             EEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccc----------ccCCCCCCChHHHHHHHHHHHHc
Q 024529          121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKITF  190 (266)
Q Consensus       121 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkqRv~lAral~  190 (266)
                      ++|++|++.. +  ..+..+++.........+++.++++.+++.+..          .++++.+|||||||||+|||||+
T Consensus        95 i~~v~Q~~~l-~--~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~  171 (260)
T 2ghi_A           95 IGIVPQDTIL-F--NETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLL  171 (260)
T ss_dssp             EEEECSSCCC-C--SEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHH
T ss_pred             EEEEcCCCcc-c--ccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHH
Confidence            9999998642 2  236666654322223455677778777764321          23567899999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          191 KKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       191 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      .+|+||||||||++||+.++..+++.|.+.  +.|||+||||++++. .||++++|++|+++ ..|+++++.
T Consensus       172 ~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~  241 (260)
T 2ghi_A          172 KDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTIS-SAESIILLNKGKIV-EKGTHKDLL  241 (260)
T ss_dssp             HCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGST-TCSEEEEEETTEEE-EEECHHHHH
T ss_pred             cCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH-hCCEEEEEECCEEE-EECCHHHHH
Confidence            999999999999999999999998888754  569999999999986 59999999999996 568877764

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=100.00  E-value=1.9e-49  Score=336.32  Aligned_cols=190  Identities=23%  Similarity=0.350  Sum_probs=158.4

Q ss_pred             CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee------eEEEEec
Q 024529           53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV------RIAVFSQ  126 (266)
Q Consensus        53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~------~i~~~~q  126 (266)
                      ..+|+++|++++|+ + .+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.+++..      .++|++|
T Consensus         8 ~~~l~~~~ls~~y~-~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q   85 (214)
T 1sgw_A            8 GSKLEIRDLSVGYD-K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPE   85 (214)
T ss_dssp             -CEEEEEEEEEESS-S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECS
T ss_pred             CceEEEEEEEEEeC-C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeC
Confidence            45899999999995 4 79999999999999999999999999999999999999999999998853      5999999


Q ss_pred             cccCCCCCCCcHHHHHHH---hCC-CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCC
Q 024529          127 HHVDGLDLSSNPLLYMMR---CFP-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS  202 (266)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt  202 (266)
                      ++..  ....++.+++..   ... ....+++.++++.+++.. . ++++.+||||||||++|||||+.+|++|||||||
T Consensus        86 ~~~~--~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~-~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPt  161 (214)
T 1sgw_A           86 EIIV--PRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD-L-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPV  161 (214)
T ss_dssp             SCCC--CTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC-T-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTT
T ss_pred             CCcC--CCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCc-C-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence            8642  223345444321   111 223667889999999975 4 7889999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCeE
Q 024529          203 NHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKA  249 (266)
Q Consensus       203 ~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~i  249 (266)
                      ++||+.++..+++.|.+.   +.|||+||||++++..+||+++++ .|++
T Consensus       162 s~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~-~~~~  210 (214)
T 1sgw_A          162 VAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKY-STKI  210 (214)
T ss_dssp             TTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred             cCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence            999999999888877653   579999999999999999988754 4554

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=100.00  E-value=9.9e-47  Score=362.65  Aligned_cols=202  Identities=23%  Similarity=0.333  Sum_probs=170.6

Q ss_pred             CcEEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeE
Q 024529           54 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI  121 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i  121 (266)
                      .+|+++|++|+|+++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.           ..+
T Consensus       340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i  419 (582)
T 3b5x_A          340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHF  419 (582)
T ss_pred             CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCe
Confidence            469999999999643 57999999999999999999999999999999999999999999998874           259


Q ss_pred             EEEeccccCCCCCCCcHHHHHHHhC-CCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHHc
Q 024529          122 AVFSQHHVDGLDLSSNPLLYMMRCF-PGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITF  190 (266)
Q Consensus       122 ~~~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqRv~lAral~  190 (266)
                      +|++|++.. +  ..+..+++.... +..+++++.++++.+++.+...          ..++.+||||||||++|||||+
T Consensus       420 ~~v~Q~~~l-~--~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~  496 (582)
T 3b5x_A          420 ALVSQNVHL-F--NDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALL  496 (582)
T ss_pred             EEEcCCCcc-c--cccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHH
Confidence            999998742 2  235666654322 2445677888888888754322          2345799999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          191 KKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       191 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      .+|++|||||||++||+.+...+.+.+.+.  +.|+|+||||++.+. .||++++|++|+++ ..|+++++.
T Consensus       497 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~  566 (582)
T 3b5x_A          497 RDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE-QADEILVVDEGEII-ERGRHADLL  566 (582)
T ss_pred             cCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEE-EECCHHHHH
Confidence            999999999999999999999998888764  579999999999987 69999999999997 578887764

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=100.00  E-value=8.3e-48  Score=352.24  Aligned_cols=201  Identities=21%  Similarity=0.286  Sum_probs=170.9

Q ss_pred             CCcEEEEeeEEEcC-CCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------ee
Q 024529           53 PPIISFSDASFGYP-GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR  120 (266)
Q Consensus        53 ~~~l~~~~l~~~y~-~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~  120 (266)
                      ...|+++||+|+|+ ++..+|+|+||+|++||+++|+||||||||||||+|+|+++ ++|+|.++++           ..
T Consensus        17 ~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~   95 (390)
T 3gd7_A           17 GGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKA   95 (390)
T ss_dssp             SCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHT
T ss_pred             CCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCC
Confidence            34699999999995 34579999999999999999999999999999999999998 9999999874           35


Q ss_pred             EEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCC-----------CChHHHHHHHHHHHH
Q 024529          121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYT-----------LSGGQKSRVAFAKIT  189 (266)
Q Consensus       121 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----------LSgGqkqRv~lAral  189 (266)
                      ++|++|++...   ..+..+++.. ......+++.++++.+++.+ ..++++.+           |||||||||+|||||
T Consensus        96 ig~v~Q~~~lf---~~tv~enl~~-~~~~~~~~v~~~l~~~~L~~-~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL  170 (390)
T 3gd7_A           96 FGVIPQKVFIF---SGTFRKNLDP-NAAHSDQEIWKVADEVGLRS-VIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSV  170 (390)
T ss_dssp             EEEESCCCCCC---SEEHHHHHCT-TCCSCHHHHHHHHHHTTCHH-HHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHH
T ss_pred             EEEEcCCcccC---ccCHHHHhhh-ccccCHHHHHHHHHHhCCHH-HHhhcccccccccccccccCCHHHHHHHHHHHHH
Confidence            99999987422   2366666532 22345678889999999974 45677777           999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          190 FKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       190 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      +.+|++|||||||++||+..+..+.+.|++.  +.|+|+||||++.+. .||+|++|++|+++ ..|+++++.+
T Consensus       171 ~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~-~aDri~vl~~G~i~-~~g~~~el~~  242 (390)
T 3gd7_A          171 LSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAML-ECDQFLVIEENKVR-QYDSILELYH  242 (390)
T ss_dssp             HTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGT-TCSEEEEEETTEEE-EESSHHHHHH
T ss_pred             hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHH-hCCEEEEEECCEEE-EECCHHHHHh
Confidence            9999999999999999999999999998764  469999999998765 69999999999997 5788887643

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=100.00  E-value=1.1e-46  Score=362.39  Aligned_cols=203  Identities=24%  Similarity=0.335  Sum_probs=172.1

Q ss_pred             CcEEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeE
Q 024529           54 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI  121 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i  121 (266)
                      .+|+++|++++|+++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.           ..+
T Consensus       340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i  419 (582)
T 3b60_A          340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQV  419 (582)
T ss_dssp             CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTE
T ss_pred             CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhC
Confidence            469999999999643 67999999999999999999999999999999999999999999999874           259


Q ss_pred             EEEeccccCCCCCCCcHHHHHHHhC-CCCcHHHHHHHHHhcCCCccc----------ccCCCCCCChHHHHHHHHHHHHc
Q 024529          122 AVFSQHHVDGLDLSSNPLLYMMRCF-PGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKITF  190 (266)
Q Consensus       122 ~~~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkqRv~lAral~  190 (266)
                      +|++|++..   +..+..+++.... +..+++++.++++.+++.+..          ...++.+||||||||++|||||+
T Consensus       420 ~~v~Q~~~l---~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~  496 (582)
T 3b60_A          420 ALVSQNVHL---FNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALL  496 (582)
T ss_dssp             EEECSSCCC---CSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHH
T ss_pred             eEEccCCcC---CCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHH
Confidence            999998742   2346777665432 345677888899988875432          22356899999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          191 KKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       191 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      .+|++|||||||++||+.+...+.+.+.+.  +.|+|+||||++.+. .||++++|++|+++ ..|+++++.+
T Consensus       497 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~~  567 (582)
T 3b60_A          497 RDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGIIV-ERGTHSELLA  567 (582)
T ss_dssp             HCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEETTEEE-EEECHHHHHH
T ss_pred             hCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEE-EecCHHHHHH
Confidence            999999999999999999999998888654  679999999999986 69999999999997 5788887653

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=4.1e-47  Score=366.27  Aligned_cols=203  Identities=20%  Similarity=0.340  Sum_probs=171.3

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEE
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA  122 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~  122 (266)
                      ..|+++|++|+|++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.           ..++
T Consensus       353 ~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~  432 (598)
T 3qf4_B          353 GEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIG  432 (598)
T ss_dssp             CCEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEE
T ss_pred             CeEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceE
Confidence            45999999999976667999999999999999999999999999999999999999999999884           2599


Q ss_pred             EEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCC----------CCCCChHHHHHHHHHHHHccC
Q 024529          123 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQP----------MYTLSGGQKSRVAFAKITFKK  192 (266)
Q Consensus       123 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----------~~~LSgGqkqRv~lAral~~~  192 (266)
                      |++|++..   +..+..+++....+..+++++.++++.+++.+.....|          +.+||||||||++|||||+.+
T Consensus       433 ~v~Q~~~l---f~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~  509 (598)
T 3qf4_B          433 IVLQDTIL---FSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLAN  509 (598)
T ss_dssp             EECTTCCC---CSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTC
T ss_pred             EEeCCCcc---ccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence            99998742   23467777654333345566778888777754332222          368999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          193 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       193 p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      |++|||||||++||+.+...+.+.+.+.  +.|+|+||||++.+.. ||+|++|++|+++ ..|+++++.+
T Consensus       510 p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~-~~g~~~~l~~  578 (598)
T 3qf4_B          510 PKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN-ADLIIVLRDGEIV-EMGKHDELIQ  578 (598)
T ss_dssp             CSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH-CSEEEEECSSSEE-ECSCHHHHHH
T ss_pred             CCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEE-EECCHHHHHh
Confidence            9999999999999999999998888654  6799999999999875 9999999999997 6899888753

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=100.00  E-value=9.2e-47  Score=362.58  Aligned_cols=203  Identities=24%  Similarity=0.380  Sum_probs=171.1

Q ss_pred             CcEEEEeeEEEcCC-CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeE
Q 024529           54 PIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI  121 (266)
Q Consensus        54 ~~l~~~~l~~~y~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i  121 (266)
                      ..++++|++|+|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.           ..+
T Consensus       338 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i  417 (578)
T 4a82_A          338 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQI  417 (578)
T ss_dssp             CCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTE
T ss_pred             CeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence            46999999999975 357999999999999999999999999999999999999999999999884           259


Q ss_pred             EEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHHcc
Q 024529          122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFK  191 (266)
Q Consensus       122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqRv~lAral~~  191 (266)
                      +|++|++..   +..+..+++....+...++++.++++..++.+...          ..++.+||||||||++|||||+.
T Consensus       418 ~~v~Q~~~l---~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~  494 (578)
T 4a82_A          418 GLVQQDNIL---FSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN  494 (578)
T ss_dssp             EEECSSCCC---CSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEeCCCcc---CcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHc
Confidence            999998742   23467777654444455677888888777643322          23346899999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          192 KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      +|++|||||||++||+.+...+.+.+.+.  +.|+|+||||++.+.. ||+|++|++|+++ ..|+++++.+
T Consensus       495 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~-~~g~~~el~~  564 (578)
T 4a82_A          495 NPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH-ADKIVVIENGHIV-ETGTHRELIA  564 (578)
T ss_dssp             CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTT-CSEEEEEETTEEE-EEECHHHHHH
T ss_pred             CCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEE-EECCHHHHHh
Confidence            99999999999999999999998888654  5699999999999874 9999999999997 6799887653

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=2e-46  Score=360.70  Aligned_cols=203  Identities=22%  Similarity=0.317  Sum_probs=170.6

Q ss_pred             CcEEEEeeEEEcCC-CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeE
Q 024529           54 PIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI  121 (266)
Q Consensus        54 ~~l~~~~l~~~y~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i  121 (266)
                      ..|+++|++|+|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.           ..+
T Consensus       340 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i  419 (587)
T 3qf4_A          340 GSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHI  419 (587)
T ss_dssp             CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHE
T ss_pred             CcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhhe
Confidence            46999999999964 457999999999999999999999999999999999999999999999874           359


Q ss_pred             EEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcc----------cccCCCCCCChHHHHHHHHHHHHcc
Q 024529          122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGN----------LALQPMYTLSGGQKSRVAFAKITFK  191 (266)
Q Consensus       122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkqRv~lAral~~  191 (266)
                      +|++|++..   +..+..+++....+....+++.++++..++.+.          ...+++.+||||||||++|||||+.
T Consensus       420 ~~v~Q~~~l---f~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~  496 (587)
T 3qf4_A          420 SAVPQETVL---FSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVK  496 (587)
T ss_dssp             EEECSSCCC---CSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHT
T ss_pred             EEECCCCcC---cCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHc
Confidence            999998742   234666766433333456666666666655321          2345678999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          192 KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      +|++|||||||++||+.+...+.+.+++.  +.|+|+||||++.+. .||+|++|++|+++ ..|+++++.+
T Consensus       497 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~~G~i~-~~g~~~el~~  566 (587)
T 3qf4_A          497 KPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL-LADKILVLHEGKVA-GFGTHKELLE  566 (587)
T ss_dssp             CCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHT-TSSEEEEEETTEEE-EEECHHHHHH
T ss_pred             CCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHH-hCCEEEEEECCEEE-EECCHHHHHh
Confidence            99999999999999999999999988764  579999999999986 79999999999997 6799888754

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=100.00  E-value=2.9e-46  Score=330.25  Aligned_cols=195  Identities=26%  Similarity=0.433  Sum_probs=148.1

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCC
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD  133 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~  133 (266)
                      ++|+++|+++.+   ..+|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++  .++|++|++.. +.
T Consensus        39 ~~l~~~~l~~~~---~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g--~i~~v~Q~~~l-~~  112 (290)
T 2bbs_A           39 DSLSFSNFSLLG---TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--RISFCSQNSWI-MP  112 (290)
T ss_dssp             -----------C---CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS--CEEEECSSCCC-CS
T ss_pred             ceEEEEEEEEcC---ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC--EEEEEeCCCcc-Cc
Confidence            469999999864   4689999999999999999999999999999999999999999999987  58999998642 22


Q ss_pred             CCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccc----------ccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 024529          134 LSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN  203 (266)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~  203 (266)
                        .+..+++. .. ......+.+.++.+++.+..          .++++.+||||||||++|||||+.+|++|||||||+
T Consensus       113 --~tv~enl~-~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts  188 (290)
T 2bbs_A          113 --GTIKENII-GV-SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFG  188 (290)
T ss_dssp             --SBHHHHHH-TT-CCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTT
T ss_pred             --ccHHHHhh-Cc-ccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcc
Confidence              36666665 22 22233444555555653221          123457999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHH-hhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          204 HLDLDAVEALIQGL-VLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       204 ~LD~~~~~~l~~~l-~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      +||+.++..+++.+ .+.  +.|||+||||++++. .||++++|++|+++ ..|+++++.
T Consensus       189 ~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~  246 (290)
T 2bbs_A          189 YLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSY-FYGTFSELQ  246 (290)
T ss_dssp             TCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HSSEEEEEETTEEE-EEECHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH-cCCEEEEEECCeEE-EeCCHHHHh
Confidence            99999999999864 332  569999999999986 59999999999996 578887764

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=100.00  E-value=2.8e-44  Score=358.09  Aligned_cols=202  Identities=35%  Similarity=0.665  Sum_probs=166.1

Q ss_pred             CCCcEEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccC
Q 024529           52 GPPIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVD  130 (266)
Q Consensus        52 ~~~~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~  130 (266)
                      +.++|+++|++++|++. +.+|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|++.+..+++|++|+...
T Consensus       668 ~~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~~~I~yv~Q~~~~  747 (986)
T 2iw3_A          668 QKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFA  747 (986)
T ss_dssp             TSEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTTCCEEEECHHHHH
T ss_pred             CCceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCccceEeeccchhh
Confidence            34689999999999642 57899999999999999999999999999999999999999999999887789999986420


Q ss_pred             C--CCCCCcHHHHH------------------------------------------------------------------
Q 024529          131 G--LDLSSNPLLYM------------------------------------------------------------------  142 (266)
Q Consensus       131 ~--~~~~~~~~~~~------------------------------------------------------------------  142 (266)
                      .  .....++..++                                                                  
T Consensus       748 ~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi  827 (986)
T 2iw3_A          748 HIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENI  827 (986)
T ss_dssp             HGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEST
T ss_pred             hhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhhhhh
Confidence            0  00000000000                                                                  


Q ss_pred             ----------------------------------------H-HhCCCCcHHHHHHHHHhcCCCccc-ccCCCCCCChHHH
Q 024529          143 ----------------------------------------M-RCFPGVPEQKLRAHLGSFGVTGNL-ALQPMYTLSGGQK  180 (266)
Q Consensus       143 ----------------------------------------~-~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~LSgGqk  180 (266)
                                                              . ........+++.++++.+|+.... .++++.+||||||
T Consensus       828 ~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~~~LSGGQk  907 (986)
T 2iw3_A          828 GMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQK  907 (986)
T ss_dssp             TSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCGGGCCHHHH
T ss_pred             hcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCccccCHHHH
Confidence                                                    0 001122356788899999997543 5678999999999


Q ss_pred             HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCC
Q 024529          181 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHG  254 (266)
Q Consensus       181 qRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g  254 (266)
                      |||+|||||+.+|+||||||||+|||+.+...+.+.|+++++|||+||||++++..+||++++|++|+++ ..|
T Consensus       908 QRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~v~~l~DrVivL~~G~Iv-~~G  980 (986)
T 2iw3_A          908 VKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGRMT-PSG  980 (986)
T ss_dssp             HHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHHHTTTCCEEECCBTTBCC-C--
T ss_pred             HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EeC
Confidence            9999999999999999999999999999999999999998889999999999999999999999999986 344

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=100.00  E-value=6.3e-44  Score=369.28  Aligned_cols=203  Identities=25%  Similarity=0.385  Sum_probs=173.8

Q ss_pred             CcEEEEeeEEEcCCC--CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------ee
Q 024529           54 PIISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR  120 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~  120 (266)
                      ..|+++||+|+|+++  .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.           .+
T Consensus      1075 g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~ 1154 (1321)
T 4f4c_A         1075 GKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQ 1154 (1321)
T ss_dssp             CCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTT
T ss_pred             CeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhh
Confidence            359999999999743  36999999999999999999999999999999999999999999999884           36


Q ss_pred             EEEEeccccCCCCCCCcHHHHHHHhC--CCCcHHHHHHHHHhcCCCccccc----------CCCCCCChHHHHHHHHHHH
Q 024529          121 IAVFSQHHVDGLDLSSNPLLYMMRCF--PGVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKI  188 (266)
Q Consensus       121 i~~~~q~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqRv~lAra  188 (266)
                      ++++||++..   +..+..+++....  +..+++++.++++..++.+....          .....||||||||++||||
T Consensus      1155 i~~V~Qdp~L---F~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARA 1231 (1321)
T 4f4c_A         1155 IAIVSQEPTL---FDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARA 1231 (1321)
T ss_dssp             EEEECSSCCC---CSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHH
T ss_pred             eEEECCCCEe---eCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHH
Confidence            9999999752   3456777764321  24567889999999888543322          2346799999999999999


Q ss_pred             HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          189 TFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       189 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      |+++|+|||||||||+||+++...+.+.|.+.  ++|+|+|+|+++.+.. ||+|+||++|+++ ..|+++++.+
T Consensus      1232 llr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~-aD~I~Vld~G~Iv-E~Gth~eLl~ 1304 (1321)
T 4f4c_A         1232 LVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMN-ADCIAVVSNGTII-EKGTHTQLMS 1304 (1321)
T ss_dssp             HHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTT-CSEEEEESSSSEE-EEECHHHHHH
T ss_pred             HHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHh-CCEEEEEECCEEE-EECCHHHHHh
Confidence            99999999999999999999999999999874  5799999999999874 9999999999997 4799988764

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=100.00  E-value=2.4e-43  Score=364.92  Aligned_cols=202  Identities=22%  Similarity=0.316  Sum_probs=174.7

Q ss_pred             CcEEEEeeEEEcCC--CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------ee
Q 024529           54 PIISFSDASFGYPG--GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR  120 (266)
Q Consensus        54 ~~l~~~~l~~~y~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~  120 (266)
                      ..|+++||+|+|++  +.++|+|+||+|++|+.++|+||||||||||+++|.|+++|++|+|.++|.           ..
T Consensus       414 g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~  493 (1321)
T 4f4c_A          414 GDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKN  493 (1321)
T ss_dssp             CCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred             CcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhc
Confidence            35999999999974  357999999999999999999999999999999999999999999999884           36


Q ss_pred             EEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc----------CCCCCCChHHHHHHHHHHHHc
Q 024529          121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKITF  190 (266)
Q Consensus       121 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqRv~lAral~  190 (266)
                      ++|++|++.   -+..+..+++....+..+++++.++++..+++++...          .....||||||||++||||++
T Consensus       494 i~~v~Q~~~---Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~  570 (1321)
T 4f4c_A          494 VAVVSQEPA---LFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALV  570 (1321)
T ss_dssp             EEEECSSCC---CCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHT
T ss_pred             ccccCCcce---eeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHc
Confidence            999999975   2456777777655455678889999998887543322          235689999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          191 KKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       191 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      ++|+|||||||||+||+++...+.+.|.+.  ++|+|+|||++..+. .||+|++|++|+++ ..|+++++.
T Consensus       571 ~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~-~aD~Iivl~~G~iv-e~Gth~eL~  640 (1321)
T 4f4c_A          571 RNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIR-NADLIISCKNGQVV-EVGDHRALM  640 (1321)
T ss_dssp             TCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTT-TCSEEEEEETTEEE-EEECHHHHH
T ss_pred             cCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHH-hCCEEEEeeCCeee-ccCCHHHHH
Confidence            999999999999999999988888888764  679999999999987 59999999999997 579988864

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=100.00  E-value=3.3e-44  Score=341.69  Aligned_cols=202  Identities=24%  Similarity=0.296  Sum_probs=166.6

Q ss_pred             CCCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCC
Q 024529           52 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDG  131 (266)
Q Consensus        52 ~~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~  131 (266)
                      +.++++++|+++.|+ + ..|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.+  ...++|++|++...
T Consensus       284 ~~~~l~~~~l~~~~~-~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~--~~~i~~v~Q~~~~~  359 (538)
T 1yqt_A          284 RETLVTYPRLVKDYG-S-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW--DLTVAYKPQYIKAD  359 (538)
T ss_dssp             CCEEEEECCEEEEET-T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC--CCCEEEECSSCCCC
T ss_pred             CCeEEEEeeEEEEEC-C-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE--CceEEEEecCCcCC
Confidence            346899999999994 3 4689999999999999999999999999999999999999999986  34699999986432


Q ss_pred             CCCCCcHHHHHHHh--CCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH
Q 024529          132 LDLSSNPLLYMMRC--FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA  209 (266)
Q Consensus       132 ~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~  209 (266)
                        ...++.+.+...  ......+.+.++++.+++. ...++++.+|||||||||+|||||+.+|++|||||||+|||+.+
T Consensus       360 --~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~  436 (538)
T 1yqt_A          360 --YEGTVYELLSKIDASKLNSNFYKTELLKPLGII-DLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQ  436 (538)
T ss_dssp             --CSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCG-GGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHH
T ss_pred             --CCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHH
Confidence              233443332211  0001345678899999996 46788999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeC--CeEEecCCChhHHHH
Q 024529          210 VEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSE--GKATPFHGTFHDYKK  261 (266)
Q Consensus       210 ~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~--G~i~~~~g~~~~~~~  261 (266)
                      +..+++.|.+    .+.|||+||||++++..+||++++|++  |++. ..|+++++..
T Consensus       437 ~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~-~~g~~~~~~~  493 (538)
T 1yqt_A          437 RLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYG-RALPPMGMRE  493 (538)
T ss_dssp             HHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEE-EECCCEEHHH
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEe-ecCCHHHHHh
Confidence            9998888764    377999999999999999999999986  6664 4677766543

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=100.00  E-value=6.5e-44  Score=343.40  Aligned_cols=201  Identities=24%  Similarity=0.308  Sum_probs=166.1

Q ss_pred             CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCC
Q 024529           53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGL  132 (266)
Q Consensus        53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~  132 (266)
                      .++++++|+++.|+ + ..|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+  ...++|++|++... 
T Consensus       355 ~~~l~~~~l~~~~~-~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~--~~~i~~v~Q~~~~~-  429 (607)
T 3bk7_A          355 ETLVEYPRLVKDYG-S-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW--DLTVAYKPQYIKAE-  429 (607)
T ss_dssp             CEEEEECCEEEECS-S-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC--CCCEEEECSSCCCC-
T ss_pred             ceEEEEeceEEEec-c-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE--eeEEEEEecCccCC-
Confidence            46899999999994 3 4689999999999999999999999999999999999999999976  34699999986432 


Q ss_pred             CCCCcHHHHHHHh-CCC-CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH
Q 024529          133 DLSSNPLLYMMRC-FPG-VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAV  210 (266)
Q Consensus       133 ~~~~~~~~~~~~~-~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~  210 (266)
                       ...++.+.+... ... ...+.+.++++.+++. ...++++.+|||||||||+|||||+.+|++|||||||+|||+.++
T Consensus       430 -~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~  507 (607)
T 3bk7_A          430 -YEGTVYELLSKIDSSKLNSNFYKTELLKPLGII-DLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQR  507 (607)
T ss_dssp             -CSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCT-TTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHH
T ss_pred             -CCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHH
Confidence             233443333211 000 1245678899999997 467889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeC--CeEEecCCChhHHHH
Q 024529          211 EALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSE--GKATPFHGTFHDYKK  261 (266)
Q Consensus       211 ~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~--G~i~~~~g~~~~~~~  261 (266)
                      ..+++.|+++    +.|||+||||++++..+||++++|++  |++. ..|+++++..
T Consensus       508 ~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~-~~g~p~~~~~  563 (607)
T 3bk7_A          508 LAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHG-RALPPMGMRE  563 (607)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEE-EECCCEEHHH
T ss_pred             HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEE-ecCCHHHHHh
Confidence            9988887653    67999999999999999999999985  6654 4677776654

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=100.00  E-value=6.8e-43  Score=360.79  Aligned_cols=203  Identities=23%  Similarity=0.318  Sum_probs=170.0

Q ss_pred             CcEEEEeeEEEcCCC--CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------ee
Q 024529           54 PIISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR  120 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~  120 (266)
                      ..|+++||+|+|+++  .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.           ..
T Consensus       386 g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~  465 (1284)
T 3g5u_A          386 GNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREI  465 (1284)
T ss_dssp             CCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHH
T ss_pred             CeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhh
Confidence            459999999999643  46999999999999999999999999999999999999999999999885           25


Q ss_pred             EEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccc----------ccCCCCCCChHHHHHHHHHHHHc
Q 024529          121 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKITF  190 (266)
Q Consensus       121 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkqRv~lAral~  190 (266)
                      ++|++|++..   +..+..+++.........+++.++++..++.+..          ....+.+||||||||++|||||+
T Consensus       466 i~~v~Q~~~l---~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~  542 (1284)
T 3g5u_A          466 IGVVSQEPVL---FATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALV  542 (1284)
T ss_dssp             EEEECSSCCC---CSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHH
T ss_pred             eEEEcCCCcc---CCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHh
Confidence            9999999742   2346777765444445666777777666553211          22456789999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHhh--cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          191 KKPHIILLDEPSNHLDLDAVEALIQGLVL--FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       191 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      .+|+|||||||||+||+.+...+.+.+..  .+.|+|+|||+++.+.. ||+|++|++|+++ ..|+++++.+
T Consensus       543 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~-~d~i~vl~~G~i~-~~g~~~~l~~  613 (1284)
T 3g5u_A          543 RNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRN-ADVIAGFDGGVIV-EQGNHDELMR  613 (1284)
T ss_dssp             HCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTT-CSEEEECSSSCCC-CEECHHHHHH
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEE-EECCHHHHHh
Confidence            99999999999999999999888887764  36799999999999976 9999999999996 6799888754

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=100.00  E-value=1.1e-42  Score=330.81  Aligned_cols=188  Identities=17%  Similarity=0.232  Sum_probs=158.2

Q ss_pred             CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCC
Q 024529           53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGL  132 (266)
Q Consensus        53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~  132 (266)
                      .++++++++++.|+ + ..|.++||+|++||++||+||||||||||+|+|+|+++|++|+|...+ ..++|++|..... 
T Consensus       267 ~~~l~~~~l~~~~~-~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~-~~i~~~~q~~~~~-  342 (538)
T 3ozx_A          267 KTKMKWTKIIKKLG-D-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK-QILSYKPQRIFPN-  342 (538)
T ss_dssp             CEEEEECCEEEEET-T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC-CCEEEECSSCCCC-
T ss_pred             cceEEEcceEEEEC-C-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-eeeEeechhcccc-
Confidence            45799999999995 3 468889999999999999999999999999999999999999998754 4689999986432 


Q ss_pred             CCCCcHHHHHHHhCC---CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH
Q 024529          133 DLSSNPLLYMMRCFP---GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA  209 (266)
Q Consensus       133 ~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~  209 (266)
                       ...++.+++.....   ......+.++++.+++.+ ..++++.+|||||||||+|||||+.+|+||||||||+|||+.+
T Consensus       343 -~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~  420 (538)
T 3ozx_A          343 -YDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHR-LLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEE  420 (538)
T ss_dssp             -CSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGG-CTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHH
T ss_pred             -cCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHH-HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHH
Confidence             23445444432211   122345778899999974 5778999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeC
Q 024529          210 VEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSE  246 (266)
Q Consensus       210 ~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~  246 (266)
                      +..+++.|++    .+.|||+||||++++..+||||++|++
T Consensus       421 ~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~  461 (538)
T 3ozx_A          421 RYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKG  461 (538)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence            9988887764    367999999999999999999999986

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=100.00  E-value=3.6e-42  Score=355.36  Aligned_cols=203  Identities=25%  Similarity=0.380  Sum_probs=168.1

Q ss_pred             CcEEEEeeEEEcCCC--CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------ee
Q 024529           54 PIISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR  120 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~  120 (266)
                      ..++++||+++|++.  .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.           ..
T Consensus      1029 g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 1108 (1284)
T 3g5u_A         1029 GNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQ 1108 (1284)
T ss_dssp             CCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTS
T ss_pred             CcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhc
Confidence            459999999999643  36899999999999999999999999999999999999999999998874           35


Q ss_pred             EEEEeccccCCCCCCCcHHHHHHHhCC--CCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHH
Q 024529          121 IAVFSQHHVDGLDLSSNPLLYMMRCFP--GVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKI  188 (266)
Q Consensus       121 i~~~~q~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqRv~lAra  188 (266)
                      ++|++|++..   +..+..+++.....  ....+++.+.++..++.+...          ...+.+|||||||||+||||
T Consensus      1109 i~~v~Q~~~l---~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARa 1185 (1284)
T 3g5u_A         1109 LGIVSQEPIL---FDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARA 1185 (1284)
T ss_dssp             CEEEESSCCC---CSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHH
T ss_pred             eEEECCCCcc---ccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHH
Confidence            9999999742   34566666643221  245666777777666543221          12356899999999999999


Q ss_pred             HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          189 TFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       189 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      |+.+|+||||||||++||+.+...+.+.+.+.  +.|+|+||||++++.. ||+|++|++|+++ ..|+++++.+
T Consensus      1186 l~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~-~dri~vl~~G~i~-~~g~~~~l~~ 1258 (1284)
T 3g5u_A         1186 LVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQN-ADLIVVIQNGKVK-EHGTHQQLLA 1258 (1284)
T ss_dssp             HHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGS-CSEEEEEETBEEE-EEECHHHHHH
T ss_pred             HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHc-CCEEEEEECCEEE-EECCHHHHHh
Confidence            99999999999999999999999999888764  5699999999999865 9999999999997 5788888653

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.8e-42  Score=330.77  Aligned_cols=198  Identities=21%  Similarity=0.260  Sum_probs=161.7

Q ss_pred             EeeEEEcCCCCcceeeceEEEeCC-----cEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCC
Q 024529           59 SDASFGYPGGPILFKNLNFGIDLD-----SRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD  133 (266)
Q Consensus        59 ~~l~~~y~~~~~~l~~vsl~i~~G-----e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~  133 (266)
                      .++++.|++...+++++||++.+|     |+++|+||||||||||+++|+|+++|++|+..  ....++|++|+....  
T Consensus       350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~--~~~~i~~~~q~~~~~--  425 (608)
T 3j16_B          350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDI--PKLNVSMKPQKIAPK--  425 (608)
T ss_dssp             SSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCC--CSCCEEEECSSCCCC--
T ss_pred             cceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCc--cCCcEEEeccccccc--
Confidence            677888965455789999999999     78999999999999999999999999999742  245689999985432  


Q ss_pred             CCCcHHHHHHHhCC--CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH
Q 024529          134 LSSNPLLYMMRCFP--GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVE  211 (266)
Q Consensus       134 ~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~  211 (266)
                      +..+....+.....  ......+.++++.+++.+ ..++++.+|||||||||+|||||+.+|+||||||||+|||+.++.
T Consensus       426 ~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~  504 (608)
T 3j16_B          426 FPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDD-IIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRI  504 (608)
T ss_dssp             CCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTT-TSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHH
T ss_pred             CCccHHHHHHHHhhcccccHHHHHHHHHHcCChh-hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHH
Confidence            23344444332221  124556778899999974 678899999999999999999999999999999999999999998


Q ss_pred             HHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeC--CeEEecCCChhHHHHH
Q 024529          212 ALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSE--GKATPFHGTFHDYKKM  262 (266)
Q Consensus       212 ~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~--G~i~~~~g~~~~~~~~  262 (266)
                      .+.+.|++    .+.|||+||||++++..+|||+++|++  |++. ..|+++++...
T Consensus       505 ~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~-~~g~p~~~~~~  560 (608)
T 3j16_B          505 ICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNA-HARAPESLLTG  560 (608)
T ss_dssp             HHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEE-ECCCCEEHHHH
T ss_pred             HHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEE-ecCChHHHhhh
Confidence            88777654    367999999999999999999999986  7775 67887766543

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=100.00  E-value=3e-41  Score=336.32  Aligned_cols=200  Identities=27%  Similarity=0.426  Sum_probs=162.6

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhC-CCCCCceEEEEcCeeeEEEEeccccCCCC
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG-ELQPSSGTVFRSAKVRIAVFSQHHVDGLD  133 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~~~~~i~~~~q~~~~~~~  133 (266)
                      .|...|+++.|+ ++.+|+|+||+|++|++++|+||||||||||||+|+| .+   .|. ......+++|++|+.. ...
T Consensus       435 ~L~~~~ls~~yg-~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i---~g~-~~~~~~~~~~v~q~~~-~~~  508 (986)
T 2iw3_A          435 DLCNCEFSLAYG-AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQV---DGF-PTQEECRTVYVEHDID-GTH  508 (986)
T ss_dssp             EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCS---TTC-CCTTTSCEEETTCCCC-CCC
T ss_pred             eeEEeeEEEEEC-CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCC-ccccceeEEEEccccc-ccc
Confidence            477779999995 5679999999999999999999999999999999994 22   110 0011234678887642 122


Q ss_pred             CCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH
Q 024529          134 LSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL  213 (266)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l  213 (266)
                      ...+..+++....... .+++.++++.+|+.....++++.+||||||||++|||||+.+|+||||||||+|||+.++.++
T Consensus       509 ~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l  587 (986)
T 2iw3_A          509 SDTSVLDFVFESGVGT-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWL  587 (986)
T ss_dssp             TTSBHHHHHHTTCSSC-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHH
T ss_pred             cCCcHHHHHHHhhcCH-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHH
Confidence            3345555554211122 677889999999964556789999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          214 IQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       214 ~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      .+.|++.+.|||+||||++++..+||++++|++|+++.+.|+++++.+
T Consensus       588 ~~~L~~~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~  635 (986)
T 2iw3_A          588 VNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK  635 (986)
T ss_dssp             HHHHHHSCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred             HHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence            999988777999999999999999999999999999657899998864

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=100.00  E-value=8.2e-42  Score=325.21  Aligned_cols=187  Identities=22%  Similarity=0.285  Sum_probs=147.0

Q ss_pred             EEE-EeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEE---------EEcCe-------
Q 024529           56 ISF-SDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV---------FRSAK-------  118 (266)
Q Consensus        56 l~~-~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i---------~~~~~-------  118 (266)
                      .++ +||+++|++...+++++| +|++||+++|+||||||||||+|+|+|+++|++|++         .+.+.       
T Consensus        21 ~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~   99 (538)
T 1yqt_A           21 EQLEEDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFE   99 (538)
T ss_dssp             ---CCCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHH
T ss_pred             hhHhcCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHH
Confidence            455 699999954334899999 999999999999999999999999999999999985         12221       


Q ss_pred             ------eeEEEEeccccCCCC-CCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHcc
Q 024529          119 ------VRIAVFSQHHVDGLD-LSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK  191 (266)
Q Consensus       119 ------~~i~~~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~  191 (266)
                            ..+++++|....... ...+....+....   ..+++.++++.+|+.. ..++++.+|||||||||+|||||+.
T Consensus       100 ~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~---~~~~~~~~l~~lgl~~-~~~~~~~~LSgGekQRv~iAraL~~  175 (538)
T 1yqt_A          100 KLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD---ETGKLEEVVKALELEN-VLEREIQHLSGGELQRVAIAAALLR  175 (538)
T ss_dssp             HHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC---SSSCHHHHHHHTTCTT-TTTSBGGGCCHHHHHHHHHHHHHHS
T ss_pred             HHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh---HHHHHHHHHHHcCCCh-hhhCChhhCCHHHHHHHHHHHHHhc
Confidence                  246777775321111 1113333332111   1235778999999974 5678999999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCC
Q 024529          192 KPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEG  247 (266)
Q Consensus       192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G  247 (266)
                      +|+|||||||||+||+.++.++++.|+++   +.|||+||||++++..+||+|++|++|
T Consensus       176 ~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~  234 (538)
T 1yqt_A          176 NATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE  234 (538)
T ss_dssp             CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred             CCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence            99999999999999999999888877654   779999999999999999999999864

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=100.00  E-value=2.2e-41  Score=325.82  Aligned_cols=188  Identities=23%  Similarity=0.289  Sum_probs=151.0

Q ss_pred             cEEE--------EeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEE---------EEcC
Q 024529           55 IISF--------SDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV---------FRSA  117 (266)
Q Consensus        55 ~l~~--------~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i---------~~~~  117 (266)
                      +|++        +|++++|++...+|+++| +|++||+++|+||||||||||||+|+|+++|++|++         .+.+
T Consensus        83 ~i~i~~l~~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G  161 (607)
T 3bk7_A           83 AISIVNLPEQLDEDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRG  161 (607)
T ss_dssp             CCEEEEECTTGGGSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTT
T ss_pred             eEEEecCCccccCCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCC
Confidence            4888        899999954334899999 999999999999999999999999999999999985         1222


Q ss_pred             -------------eeeEEEEeccccCCC-CCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHH
Q 024529          118 -------------KVRIAVFSQHHVDGL-DLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRV  183 (266)
Q Consensus       118 -------------~~~i~~~~q~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv  183 (266)
                                   ...+++++|...... ....+..+.+...   ...+++.++++.+|+.+ ..++++.+|||||||||
T Consensus       162 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~---~~~~~~~~~L~~lgL~~-~~~~~~~~LSGGekQRv  237 (607)
T 3bk7_A          162 NELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV---DEVGKFEEVVKELELEN-VLDRELHQLSGGELQRV  237 (607)
T ss_dssp             STHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT---CCSSCHHHHHHHTTCTT-GGGSBGGGCCHHHHHHH
T ss_pred             EehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhh---HHHHHHHHHHHHcCCCc-hhCCChhhCCHHHHHHH
Confidence                         123667777532111 1112444433221   11245778999999974 56789999999999999


Q ss_pred             HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCC
Q 024529          184 AFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEG  247 (266)
Q Consensus       184 ~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G  247 (266)
                      +|||||+.+|++|||||||++||+.++..+++.|+++   +.|||+||||++++..+||+|++|+++
T Consensus       238 aIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~  304 (607)
T 3bk7_A          238 AIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE  304 (607)
T ss_dssp             HHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred             HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence            9999999999999999999999999999888877654   679999999999999999999999865

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.3e-39  Score=308.42  Aligned_cols=186  Identities=18%  Similarity=0.223  Sum_probs=141.1

Q ss_pred             eeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEE-----------cCee---------
Q 024529           60 DASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR-----------SAKV---------  119 (266)
Q Consensus        60 ~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~-----------~~~~---------  119 (266)
                      |++++|++....+++++ ++++||++||+||||||||||||+|+|+++|++|+|..           .+..         
T Consensus        82 ~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~  160 (608)
T 3j16_B           82 HVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML  160 (608)
T ss_dssp             TEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHH
T ss_pred             CeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHH
Confidence            56888865555677777 68999999999999999999999999999999999831           1110         


Q ss_pred             ----eEEEEeccccC----CCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHcc
Q 024529          120 ----RIAVFSQHHVD----GLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK  191 (266)
Q Consensus       120 ----~i~~~~q~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~  191 (266)
                          ...+.+|....    ......+....+... .....+++.++++.+++.. ..++++.+|||||||||+|||||+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~-~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGe~Qrv~iAraL~~  238 (608)
T 3j16_B          161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLR-MEKSPEDVKRYIKILQLEN-VLKRDIEKLSGGELQRFAIGMSCVQ  238 (608)
T ss_dssp             HTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHH-CCSCHHHHHHHHHHHTCTG-GGGSCTTTCCHHHHHHHHHHHHHHS
T ss_pred             HHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhh-hhhHHHHHHHHHHHcCCcc-hhCCChHHCCHHHHHHHHHHHHHHh
Confidence                01111121100    000000111111111 1234577889999999974 5678999999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEEEeCCe
Q 024529          192 KPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGK  248 (266)
Q Consensus       192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~l~~G~  248 (266)
                      +|++|||||||++||+.++..+.+.+++.   +.|||+||||++++..+||++++|.+|.
T Consensus       239 ~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~  298 (608)
T 3j16_B          239 EADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVP  298 (608)
T ss_dssp             CCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCT
T ss_pred             CCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence            99999999999999999999888887654   5799999999999999999999998765

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=100.00  E-value=7.5e-38  Score=305.38  Aligned_cols=190  Identities=19%  Similarity=0.205  Sum_probs=129.5

Q ss_pred             CcceeeceEEEeCCcEEEEECCCCchHHHHH---------------------HHHhCCCCCCceEEE-------EcCe--
Q 024529           69 PILFKNLNFGIDLDSRIAMVGPNGIGKSTIL---------------------KLIAGELQPSSGTVF-------RSAK--  118 (266)
Q Consensus        69 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl---------------------~~l~Gl~~p~~G~i~-------~~~~--  118 (266)
                      ..+|+||||+|++||++||+||||||||||+                     +++.|+..|+.|.|.       +.+.  
T Consensus        31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~  110 (670)
T 3ux8_A           31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT  110 (670)
T ss_dssp             STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred             ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence            4589999999999999999999999999998                     999999999966553       2221  


Q ss_pred             -----eeEEEEeccccCC-----------------CCCCCcHHHHHHH--hC--CCC----cH------HHHHHHHHhcC
Q 024529          119 -----VRIAVFSQHHVDG-----------------LDLSSNPLLYMMR--CF--PGV----PE------QKLRAHLGSFG  162 (266)
Q Consensus       119 -----~~i~~~~q~~~~~-----------------~~~~~~~~~~~~~--~~--~~~----~~------~~~~~~l~~~~  162 (266)
                           ..+++++|.....                 .....+..+++..  ..  ...    ..      .+...+++.+|
T Consensus       111 ~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  190 (670)
T 3ux8_A          111 SRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVG  190 (670)
T ss_dssp             ----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHTT
T ss_pred             hccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHcC
Confidence                 1233333321100                 0000011111100  00  000    00      01123588899


Q ss_pred             CCcccccCCCCCCChHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHHhh
Q 024529          163 VTGNLALQPMYTLSGGQKSRVAFAKITFKKPH--IILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGS  237 (266)
Q Consensus       163 l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~--lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~~~~~  237 (266)
                      +.+...++++.+|||||||||+|||||+.+|+  +|||||||+|||+.++.++++.|++   .+.|||+||||++++. .
T Consensus       191 L~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~-~  269 (670)
T 3ux8_A          191 LDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML-A  269 (670)
T ss_dssp             CTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHH-H
T ss_pred             CchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHh-h
Confidence            97655678999999999999999999999998  9999999999999999888877754   4679999999999876 5


Q ss_pred             cCEEEEE------eCCeEEecCCChhHHH
Q 024529          238 VEELWVV------SEGKATPFHGTFHDYK  260 (266)
Q Consensus       238 ~d~i~~l------~~G~i~~~~g~~~~~~  260 (266)
                      ||++++|      ++|+++ +.|+++++.
T Consensus       270 ~d~ii~l~~g~~~~~G~i~-~~g~~~~~~  297 (670)
T 3ux8_A          270 ADYLIDIGPGAGIHGGEVV-AAGTPEEVM  297 (670)
T ss_dssp             CSEEEEECSSSGGGCCSEE-EEECHHHHH
T ss_pred             CCEEEEecccccccCCEEE-EecCHHHHh
Confidence            9999999      889986 678888764

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=100.00  E-value=1e-37  Score=296.65  Aligned_cols=183  Identities=20%  Similarity=0.259  Sum_probs=138.1

Q ss_pred             eeEEEcCCCCcceeeceEEE-eCCcEEEEECCCCchHHHHHHHHhCCCCCCceEE-----------EEcCe---------
Q 024529           60 DASFGYPGGPILFKNLNFGI-DLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV-----------FRSAK---------  118 (266)
Q Consensus        60 ~l~~~y~~~~~~l~~vsl~i-~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i-----------~~~~~---------  118 (266)
                      +.+.+|+.+  -|+-..|.+ ++||++||+||||||||||+|+|+|+++|++|+|           .+.+.         
T Consensus         4 ~~~~~~~~~--~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~   81 (538)
T 3ozx_A            4 EVIHRYKVN--GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKEL   81 (538)
T ss_dssp             CEEEESSTT--SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHH
T ss_pred             CCceecCCC--ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHH
Confidence            567889543  355555655 4999999999999999999999999999999988           22221         


Q ss_pred             ----eeEEEEeccccCCC-CCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCC
Q 024529          119 ----VRIAVFSQHHVDGL-DLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP  193 (266)
Q Consensus       119 ----~~i~~~~q~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p  193 (266)
                          ..+....|...... ....+....+....   ..+++.++++.+++.. ..++++.+|||||||||+|||||+.+|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~---~~~~~~~~l~~l~l~~-~~~~~~~~LSgGe~Qrv~iA~aL~~~p  157 (538)
T 3ozx_A           82 YSNELKIVHKIQYVEYASKFLKGTVNEILTKID---ERGKKDEVKELLNMTN-LWNKDANILSGGGLQRLLVAASLLREA  157 (538)
T ss_dssp             HTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHC---CSSCHHHHHHHTTCGG-GTTSBGGGCCHHHHHHHHHHHHHHSCC
T ss_pred             hhcccchhhccchhhhhhhhccCcHHHHhhcch---hHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence                12233333211000 01112222222111   1234678899999974 568899999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCe
Q 024529          194 HIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGK  248 (266)
Q Consensus       194 ~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~  248 (266)
                      +|||||||||+||+.++.++.+.|+++  +.|||+||||++++..+||+|++|++|.
T Consensus       158 ~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~  214 (538)
T 3ozx_A          158 DVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGES  214 (538)
T ss_dssp             SEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred             CEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence            999999999999999999888887665  6799999999999999999999998653

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=100.00  E-value=5.6e-36  Score=292.14  Aligned_cols=107  Identities=24%  Similarity=0.342  Sum_probs=92.1

Q ss_pred             HHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEE
Q 024529          152 QKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP---HIILLDEPSNHLDLDAVEALIQGLVL---FQGGIL  225 (266)
Q Consensus       152 ~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p---~lllLDEPt~~LD~~~~~~l~~~l~~---~~~tii  225 (266)
                      .+..+.+..+++.....++++.+|||||||||+|||||+.+|   +||||||||+|||+.+...+++.+++   .+.|||
T Consensus       521 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi  600 (670)
T 3ux8_A          521 KRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVL  600 (670)
T ss_dssp             HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence            455677888998655567889999999999999999999887   49999999999999999888877654   367999


Q ss_pred             EEecCHHHHHhhcCEEEEE------eCCeEEecCCChhHHH
Q 024529          226 MVSHDEHLISGSVEELWVV------SEGKATPFHGTFHDYK  260 (266)
Q Consensus       226 ivtHd~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~  260 (266)
                      +||||++++. .||+|++|      ++|+++ +.|+++++.
T Consensus       601 ~vtHd~~~~~-~~d~i~~l~~~~g~~~G~i~-~~g~~~~~~  639 (670)
T 3ux8_A          601 VIEHNLDVIK-TADYIIDLGPEGGDRGGQIV-AVGTPEEVA  639 (670)
T ss_dssp             EECCCHHHHT-TCSEEEEEESSSGGGCCEEE-EEECHHHHH
T ss_pred             EEeCCHHHHH-hCCEEEEecCCcCCCCCEEE-EecCHHHHH
Confidence            9999999885 69999999      899997 678888764

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=100.00  E-value=3.2e-34  Score=283.15  Aligned_cols=107  Identities=23%  Similarity=0.296  Sum_probs=93.2

Q ss_pred             HHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccC---CCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEE
Q 024529          152 QKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK---PHIILLDEPSNHLDLDAVEALIQGLVL---FQGGIL  225 (266)
Q Consensus       152 ~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~---p~lllLDEPt~~LD~~~~~~l~~~l~~---~~~tii  225 (266)
                      .++.++++.+++.....++++.+|||||||||+||++|+.+   |+||||||||+|||+.++..+++.|.+   .+.|||
T Consensus       708 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVI  787 (842)
T 2vf7_A          708 FRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVI  787 (842)
T ss_dssp             HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence            35678899999975445788999999999999999999996   799999999999999999888777654   478999


Q ss_pred             EEecCHHHHHhhcCEEEEE------eCCeEEecCCChhHHH
Q 024529          226 MVSHDEHLISGSVEELWVV------SEGKATPFHGTFHDYK  260 (266)
Q Consensus       226 ivtHd~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~  260 (266)
                      +||||++++ .+||+|++|      ++|+++ +.|+++++.
T Consensus       788 visHdl~~i-~~aDrii~L~p~~g~~~G~Iv-~~g~~~el~  826 (842)
T 2vf7_A          788 AVEHKMQVV-AASDWVLDIGPGAGEDGGRLV-AQGTPAEVA  826 (842)
T ss_dssp             EECCCHHHH-TTCSEEEEECSSSGGGCCSEE-EEECHHHHT
T ss_pred             EEcCCHHHH-HhCCEEEEECCCCCCCCCEEE-EEcCHHHHH
Confidence            999999999 689999999      689996 678888764

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.9e-38  Score=294.23  Aligned_cols=193  Identities=11%  Similarity=0.069  Sum_probs=151.5

Q ss_pred             CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCce-E-EEEcCe--eeEEEEeccc
Q 024529           53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG-T-VFRSAK--VRIAVFSQHH  128 (266)
Q Consensus        53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G-~-i~~~~~--~~i~~~~q~~  128 (266)
                      .++++++|+++.|+       ++||++++|++++|+||||||||||+|+|+|+++|++| + |++++.  ..++|++|+.
T Consensus       116 ~~mi~~~nl~~~y~-------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~  188 (460)
T 2npi_A          116 HTMKYIYNLHFMLE-------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCI  188 (460)
T ss_dssp             CTHHHHHHHHHHHH-------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCC
T ss_pred             cchhhhhhhhehhh-------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccch
Confidence            45788888888883       68999999999999999999999999999999999999 8 988763  4578888875


Q ss_pred             cC-----CCCCCCcHHHHHHHh-CCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHH--HccCCCE----E
Q 024529          129 VD-----GLDLSSNPLLYMMRC-FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKI--TFKKPHI----I  196 (266)
Q Consensus       129 ~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAra--l~~~p~l----l  196 (266)
                      ..     .++...+.  +.... ......+++.++++.+|+... .+  +.+|||||||||+||||  |+.+|++    |
T Consensus       189 ~l~~~~~~~tv~eni--~~~~~~~~~~~~~~~~~ll~~~gl~~~-~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGL  263 (460)
T 2npi_A          189 SATPISDILDAQLPT--WGQSLTSGATLLHNKQPMVKNFGLERI-NE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGC  263 (460)
T ss_dssp             EEEECCSCCCTTCTT--CSCBCBSSCCSSCCBCCEECCCCSSSG-GG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCE
T ss_pred             hhcccccccchhhhh--cccccccCcchHHHHHHHHHHhCCCcc-cc--hhhhhHHHHHHHHHHHHHHhccCcccCcceE
Confidence            21     11111111  10000 001112334567788888653 33  78999999999999999  9999999    9


Q ss_pred             EEeC-CCCCCCHHHHHHHHHHHhhcCCEEEEEecCHH------HHHhhcCE-----EEEEe-CCeEEecCCChhHHH
Q 024529          197 LLDE-PSNHLDLDAVEALIQGLVLFQGGILMVSHDEH------LISGSVEE-----LWVVS-EGKATPFHGTFHDYK  260 (266)
Q Consensus       197 lLDE-Pt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~------~~~~~~d~-----i~~l~-~G~i~~~~g~~~~~~  260 (266)
                      |||| ||++||+. ...+.+.+++++.|+|+||||.+      ++..+||+     |++|+ +|+++  .|+.+++.
T Consensus       264 lLDEpPts~LD~~-~~~l~~l~~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv--~g~~~~~~  337 (460)
T 2npi_A          264 IVDTPSISQLDEN-LAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS--AVDDVYKR  337 (460)
T ss_dssp             EEECCCGGGSCSS-CHHHHHHHHHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC--CCCHHHHH
T ss_pred             EEeCCcccccChh-HHHHHHHHHHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE--ECCHHHHh
Confidence            9999 99999999 77777777788889999999988      78889999     99999 99985  68877663

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=6.9e-33  Score=275.72  Aligned_cols=107  Identities=23%  Similarity=0.328  Sum_probs=93.7

Q ss_pred             HHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEE
Q 024529          152 QKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP---HIILLDEPSNHLDLDAVEALIQGLVL---FQGGIL  225 (266)
Q Consensus       152 ~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p---~lllLDEPt~~LD~~~~~~l~~~l~~---~~~tii  225 (266)
                      .++.++|+.+|+.....++++.+|||||+|||+|||||+.+|   +||||||||+|||+.++..+++.|.+   .+.|||
T Consensus       783 ~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVI  862 (916)
T 3pih_A          783 KRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVI  862 (916)
T ss_dssp             HHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEE
Confidence            456778999999755567899999999999999999999875   79999999999999999988887764   477999


Q ss_pred             EEecCHHHHHhhcCEEEEE------eCCeEEecCCChhHHH
Q 024529          226 MVSHDEHLISGSVEELWVV------SEGKATPFHGTFHDYK  260 (266)
Q Consensus       226 ivtHd~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~  260 (266)
                      +||||++++.. ||+|++|      ++|+++ +.|+++++.
T Consensus       863 vI~HdL~~i~~-ADrIivLgp~gg~~~G~Iv-~~Gtpeel~  901 (916)
T 3pih_A          863 VIEHNLDVIKN-ADHIIDLGPEGGKEGGYIV-ATGTPEEIA  901 (916)
T ss_dssp             EECCCHHHHTT-CSEEEEEESSSGGGCCEEE-EEESHHHHH
T ss_pred             EEeCCHHHHHh-CCEEEEecCCCCCCCCEEE-EEcCHHHHH
Confidence            99999999875 9999999      889997 689988875

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=100.00  E-value=1.1e-32  Score=254.00  Aligned_cols=75  Identities=24%  Similarity=0.328  Sum_probs=70.2

Q ss_pred             CChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEE----eC
Q 024529          175 LSGGQKSRVAFAKITFKKP--HIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVV----SE  246 (266)
Q Consensus       175 LSgGqkqRv~lAral~~~p--~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l----~~  246 (266)
                      ||||||||++||++|+.+|  ++|||||||+|||+.++.++.+.|+++  +.+||+||||++++. +||++++|    ++
T Consensus       296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~-~~d~i~~l~k~~~~  374 (415)
T 4aby_A          296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHHYKVEKQVED  374 (415)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHT-TCSEEEEEEEEEET
T ss_pred             cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHh-hcCeEEEEEEeccC
Confidence            5999999999999999999  999999999999999999999999876  479999999998875 79999999    99


Q ss_pred             CeEE
Q 024529          247 GKAT  250 (266)
Q Consensus       247 G~i~  250 (266)
                      |+++
T Consensus       375 G~~~  378 (415)
T 4aby_A          375 GRTV  378 (415)
T ss_dssp             TEEE
T ss_pred             CceE
Confidence            9875

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=100.00  E-value=3.9e-33  Score=276.43  Aligned_cols=106  Identities=25%  Similarity=0.341  Sum_probs=91.8

Q ss_pred             HHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEE
Q 024529          153 KLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP---HIILLDEPSNHLDLDAVEALIQGLVL---FQGGILM  226 (266)
Q Consensus       153 ~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p---~lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiii  226 (266)
                      +..++++.+++.....++++.+|||||||||+||++|+.+|   +||||||||+|||+.++..+++.|.+   .+.|||+
T Consensus       824 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIv  903 (972)
T 2r6f_A          824 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLV  903 (972)
T ss_dssp             HHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence            45678999999753567899999999999999999999865   99999999999999999988887754   4679999


Q ss_pred             EecCHHHHHhhcCEEEEE------eCCeEEecCCChhHHH
Q 024529          227 VSHDEHLISGSVEELWVV------SEGKATPFHGTFHDYK  260 (266)
Q Consensus       227 vtHd~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~  260 (266)
                      ||||++++. .||+|++|      ++|+++ +.|+++++.
T Consensus       904 isHdl~~i~-~aDrIivL~p~gG~~~G~Iv-~~g~~~el~  941 (972)
T 2r6f_A          904 IEHNLDVIK-TADYIIDLGPEGGDRGGQIV-AVGTPEEVA  941 (972)
T ss_dssp             ECCCHHHHT-TCSEEEEECSSSTTSCCSEE-EEESHHHHH
T ss_pred             EcCCHHHHH-hCCEEEEEcCCCCCCCCEEE-EecCHHHHH
Confidence            999999985 79999999      689996 678877764

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.97  E-value=2.8e-30  Score=235.05  Aligned_cols=81  Identities=19%  Similarity=0.306  Sum_probs=73.7

Q ss_pred             cCCCCCCChHHHHHHHHHHHHc------cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcC
Q 024529          169 LQPMYTLSGGQKSRVAFAKITF------KKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVE  239 (266)
Q Consensus       169 ~~~~~~LSgGqkqRv~lAral~------~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d  239 (266)
                      ++++.+|||||+|||+||+||+      .+|++|||||||++||+.+...+++.|.+.   +.|||+||||++++ ..||
T Consensus       274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~-~~~d  352 (365)
T 3qf7_A          274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFS-EAFD  352 (365)
T ss_dssp             EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHH-TTCS
T ss_pred             CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHH-HhCC
Confidence            4678899999999999999999      799999999999999999999998888754   57999999999984 5799


Q ss_pred             EEEEEeCCeEE
Q 024529          240 ELWVVSEGKAT  250 (266)
Q Consensus       240 ~i~~l~~G~i~  250 (266)
                      ++++|++|+++
T Consensus       353 ~~~~l~~G~i~  363 (365)
T 3qf7_A          353 RKLRITGGVVV  363 (365)
T ss_dssp             CEEEEETTEEC
T ss_pred             EEEEEECCEEE
Confidence            99999999985

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.96  E-value=3e-33  Score=235.87  Aligned_cols=150  Identities=15%  Similarity=0.116  Sum_probs=97.0

Q ss_pred             CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEc--------CeeeEEEEeccccCCC-CCCCcH
Q 024529           68 GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS--------AKVRIAVFSQHHVDGL-DLSSNP  138 (266)
Q Consensus        68 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~--------~~~~i~~~~q~~~~~~-~~~~~~  138 (266)
                      ++.+|+++    ++|++++|+||||||||||+++|+|+ +|++|+|...        .+..++|++|++...+ .+....
T Consensus        12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~~~~   86 (208)
T 3b85_A           12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYLRPL   86 (208)
T ss_dssp             HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC------CTTTHHH
T ss_pred             HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCHHHHHHHHHHHH
Confidence            45688986    89999999999999999999999999 9999998431        1234778887652222 111000


Q ss_pred             HHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHh
Q 024529          139 LLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV  218 (266)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~  218 (266)
                      ...+   ........+.++++. ++              |||||++|||||+.+|++|||||||++    ++..+.+.|.
T Consensus        87 ~~~~---~~~~~~~~~~~~l~~-gl--------------Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~  144 (208)
T 3b85_A           87 HDAL---RDMVEPEVIPKLMEA-GI--------------VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLT  144 (208)
T ss_dssp             HHHH---TTTSCTTHHHHHHHT-TS--------------EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHT
T ss_pred             HHHH---HHhccHHHHHHHHHh-CC--------------chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHH
Confidence            1111   111123345555554 32              999999999999999999999999999    7777777777


Q ss_pred             hc--CCEEEEEecCHHHHHhhcCEEEEEeCCeE
Q 024529          219 LF--QGGILMVSHDEHLISGSVEELWVVSEGKA  249 (266)
Q Consensus       219 ~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i  249 (266)
                      +.  +.||| ||||++++..    ...+++|..
T Consensus       145 ~l~~g~tii-vtHd~~~~~~----~~~~~~G~~  172 (208)
T 3b85_A          145 RLGFGSKMV-VTGDITQVDL----PGGQKSGLR  172 (208)
T ss_dssp             TBCTTCEEE-EEEC----------------CCH
T ss_pred             HhcCCCEEE-EECCHHHHhC----cCCCCCcHH
Confidence            65  45888 9999987664    334556643

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.96  E-value=1.3e-30  Score=213.00  Aligned_cols=145  Identities=12%  Similarity=0.093  Sum_probs=95.6

Q ss_pred             eceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHH
Q 024529           74 NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQK  153 (266)
Q Consensus        74 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (266)
                      |+||++++||+++|+||||||||||++++.+-...      .......++++|++... .+........        ...
T Consensus         1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~------~~~d~~~g~~~~~~~~~-~~~~~~~~~~--------~~~   65 (171)
T 4gp7_A            1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEV------ISSDFCRGLMSDDENDQ-TVTGAAFDVL--------HYI   65 (171)
T ss_dssp             CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGE------EEHHHHHHHHCSSTTCG-GGHHHHHHHH--------HHH
T ss_pred             CccccCCCCEEEEEECCCCCCHHHHHHHHccCCeE------EccHHHHHHhcCcccch-hhHHHHHHHH--------HHH
Confidence            68999999999999999999999999986532211      11111113344432100 0000000000        011


Q ss_pred             HHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH----------------HHHHHHHHH
Q 024529          154 LRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLD----------------AVEALIQGL  217 (266)
Q Consensus       154 ~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~----------------~~~~l~~~l  217 (266)
                      .. .....+.... .+ .....|||||||++||||++.+|++|+|||||++||+.                ....+.+.+
T Consensus        66 ~~-~~~~~g~~~~-~~-~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l  142 (171)
T 4gp7_A           66 VS-KRLQLGKLTV-VD-ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSI  142 (171)
T ss_dssp             HH-HHHHTTCCEE-EE-SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHS
T ss_pred             HH-HHHhCCCeEE-EE-CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhh
Confidence            11 2223454422 22 33567999999999999999999999999999999999                556777664


Q ss_pred             h---hcCCEEEEEecCHHHHHh
Q 024529          218 V---LFQGGILMVSHDEHLISG  236 (266)
Q Consensus       218 ~---~~~~tiiivtHd~~~~~~  236 (266)
                      +   +.+.|+|+||||++++..
T Consensus       143 ~~l~~~g~tvi~vtH~~~~~~~  164 (171)
T 4gp7_A          143 KGLQREGFRYVYILNSPEEVEE  164 (171)
T ss_dssp             TTHHHHTCSEEEEECSHHHHHH
T ss_pred             hhHHhcCCcEEEEeCCHHHhhh
Confidence            3   347799999999999875

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.95  E-value=1.2e-28  Score=202.81  Aligned_cols=151  Identities=13%  Similarity=0.045  Sum_probs=106.8

Q ss_pred             EEEEECCCCchHHHHHHHHhCCCCCC-ceEEEE-----cCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHH
Q 024529           84 RIAMVGPNGIGKSTILKLIAGELQPS-SGTVFR-----SAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAH  157 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~-----~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (266)
                      +++|+||||||||||+++|+|++... .|....     .....++|++|+..    ...+.                   
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~----~~~~~-------------------   58 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTE----GKKKI-------------------   58 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETT----CCEEE-------------------
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCc----HHHHH-------------------
Confidence            68999999999999999999997532 232211     11235678877641    11111                   


Q ss_pred             HHhcCCCc-ccccCCCCCCChHHHHHHHHHHH-----HccCCCEEEEeC--CCCCCCHHHHHHHHHHHhhcCCEEEEEe-
Q 024529          158 LGSFGVTG-NLALQPMYTLSGGQKSRVAFAKI-----TFKKPHIILLDE--PSNHLDLDAVEALIQGLVLFQGGILMVS-  228 (266)
Q Consensus       158 l~~~~l~~-~~~~~~~~~LSgGqkqRv~lAra-----l~~~p~lllLDE--Pt~~LD~~~~~~l~~~l~~~~~tiiivt-  228 (266)
                      +..++... ...++++.+||||||||++||+|     ++.+|++|||||  ||++||+.....+.+.+.+.+.++|++| 
T Consensus        59 ~~~~~~~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H  138 (178)
T 1ye8_A           59 FSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIP  138 (178)
T ss_dssp             EEETTCCCSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECC
T ss_pred             HHhhcCCccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEc
Confidence            00111111 23456788999999999999996     999999999999  9999999999999999988767788888 


Q ss_pred             --cCHHHHHhhcCEEEEEeCCeEEec-CCChhHHHH
Q 024529          229 --HDEHLISGSVEELWVVSEGKATPF-HGTFHDYKK  261 (266)
Q Consensus       229 --Hd~~~~~~~~d~i~~l~~G~i~~~-~g~~~~~~~  261 (266)
                        ||.+++..+|++    .+|+++.+ ..+.+++.+
T Consensus       139 ~~h~~~~~~~i~~r----~~~~i~~~~~~~r~~~~~  170 (178)
T 1ye8_A          139 IRDVHPLVKEIRRL----PGAVLIELTPENRDVILE  170 (178)
T ss_dssp             SSCCSHHHHHHHTC----TTCEEEECCTTTTTTHHH
T ss_pred             cCCCchHHHHHHhc----CCcEEEEecCcCHHHHHH
Confidence              599999999997    34555432 244444433

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.95  E-value=4.2e-28  Score=217.08  Aligned_cols=90  Identities=21%  Similarity=0.217  Sum_probs=74.0

Q ss_pred             ccCCCCCCChHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEE
Q 024529          168 ALQPMYTLSGGQKSRVAFAKITF----KKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEEL  241 (266)
Q Consensus       168 ~~~~~~~LSgGqkqRv~lAral~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i  241 (266)
                      .+.++..||||||||++||++|+    .+|++|||||||++||+.....+.+.+.+.  +.+||+|||+.+. ..+||++
T Consensus       213 ~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~-~~~~d~~  291 (322)
T 1e69_A          213 RDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIV-MEAADLL  291 (322)
T ss_dssp             CCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTG-GGGCSEE
T ss_pred             ccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHH-HhhCceE
Confidence            34567899999999999999997    689999999999999999999999888765  5689999999764 5589987


Q ss_pred             --EEEeCCeEEecCCChhH
Q 024529          242 --WVVSEGKATPFHGTFHD  258 (266)
Q Consensus       242 --~~l~~G~i~~~~g~~~~  258 (266)
                        ++|.+|.......+.++
T Consensus       292 ~~v~~~~g~s~~~~~~~~~  310 (322)
T 1e69_A          292 HGVTMVNGVSAIVPVEVEK  310 (322)
T ss_dssp             EEEEESSSCEEEEECCC--
T ss_pred             EEEEEeCCEEEEEEEEcch
Confidence              88888876544444444

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.93  E-value=7.7e-30  Score=234.78  Aligned_cols=170  Identities=14%  Similarity=0.069  Sum_probs=127.1

Q ss_pred             CcceeeceEEEeCCc--------------------EEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee--eEEEEec
Q 024529           69 PILFKNLNFGIDLDS--------------------RIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV--RIAVFSQ  126 (266)
Q Consensus        69 ~~~l~~vsl~i~~Ge--------------------~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~--~i~~~~q  126 (266)
                      +.+++++||+|++|+                    +++|+||||||||||+|+|+|+++|++|+|..++..  +.++++|
T Consensus        36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q  115 (413)
T 1tq4_A           36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK  115 (413)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE
T ss_pred             HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc
Confidence            358999999999999                    999999999999999999999999999999876532  2267777


Q ss_pred             cccC-CCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChH--HHHHHHHHHHHcc----------CC
Q 024529          127 HHVD-GLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGG--QKSRVAFAKITFK----------KP  193 (266)
Q Consensus       127 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG--qkqRv~lAral~~----------~p  193 (266)
                      .+.. .+.+..++    ....   ....+.++++.+++.+. . ..+. ||+|  |+||++||++|+.          +|
T Consensus       116 ~~~~~~ltv~D~~----g~~~---~~~~~~~~L~~~~L~~~-~-~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkp  185 (413)
T 1tq4_A          116 HPNIPNVVFWDLP----GIGS---TNFPPDTYLEKMKFYEY-D-FFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKV  185 (413)
T ss_dssp             CSSCTTEEEEECC----CGGG---SSCCHHHHHHHTTGGGC-S-EEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCH
T ss_pred             ccccCCeeehHhh----cccc---hHHHHHHHHHHcCCCcc-C-CeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecC
Confidence            6421 11111111    0001   12346788888988643 2 2333 9999  9999999999999          99


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHhhc------------CCEEEEEecCHHH--HHhhcCEEE-EEeCCe
Q 024529          194 HIILLDEPSNHLDLDAVEALIQGLVLF------------QGGILMVSHDEHL--ISGSVEELW-VVSEGK  248 (266)
Q Consensus       194 ~lllLDEPt~~LD~~~~~~l~~~l~~~------------~~tiiivtHd~~~--~~~~~d~i~-~l~~G~  248 (266)
                      ++++|||||++||+.++..+++.+++.            ..+|+++||+++.  ++.+||++. .|..|.
T Consensus       186 dlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~  255 (413)
T 1tq4_A          186 DSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK  255 (413)
T ss_dssp             HHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred             cccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence            999999999999998877776655432            1358899999887  888898875 455554

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=99.93  E-value=4.6e-31  Score=233.95  Aligned_cols=163  Identities=15%  Similarity=0.176  Sum_probs=120.5

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCC
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDL  134 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~  134 (266)
                      +|+++||+|.|+  ..+|+++||+|++|++++|+||||||||||+++|+|++   +|+|.       +|++|.+...   
T Consensus       101 ~i~~~~vs~~y~--~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~-------~~v~q~~~lf---  165 (305)
T 2v9p_A          101 FFNYQNIELITF--INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVL-------SFANHKSHFW---  165 (305)
T ss_dssp             HHHHTTCCHHHH--HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEE-------CGGGTTSGGG---
T ss_pred             eEEEEEEEEEcC--hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEE-------EEecCccccc---
Confidence            588999999995  56899999999999999999999999999999999998   89884       4556654211   


Q ss_pred             CCcHHH-HHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH
Q 024529          135 SSNPLL-YMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL  213 (266)
Q Consensus       135 ~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l  213 (266)
                      ..+... ++.. ..... ..+.+.++.+ +... .+  +..||||||||   ||||+.+|+|||    |++||+.+...+
T Consensus       166 ~~ti~~~ni~~-~~~~~-~~~~~~i~~~-L~~g-ld--g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i  232 (305)
T 2v9p_A          166 LASLADTRAAL-VDDAT-HACWRYFDTY-LRNA-LD--GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRY  232 (305)
T ss_dssp             GGGGTTCSCEE-EEEEC-HHHHHHHHHT-TTGG-GG--TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGG
T ss_pred             cccHHHHhhcc-Ccccc-HHHHHHHHHH-hHcc-CC--ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHH
Confidence            011110 0000 00111 2455666654 4332 22  67999999999   999999999999    999999887776


Q ss_pred             HHHHhhcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529          214 IQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  259 (266)
Q Consensus       214 ~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  259 (266)
                      ..           +||++..+. .||+| +|++|+++ ..|+.+++
T Consensus       233 ~~-----------ltH~~~~~~-~aD~i-vl~~G~iv-~~g~~~el  264 (305)
T 2v9p_A          233 LY-----------LHSRVQTFR-FEQPC-TDESGEQP-FNITDADW  264 (305)
T ss_dssp             GG-----------GTTTEEEEE-CCCCC-CCC---CC-CCCCHHHH
T ss_pred             HH-----------HhCCHHHHH-hCCEE-EEeCCEEE-EeCCHHHH
Confidence            52           299988764 79999 99999996 78998876

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.92  E-value=2.5e-27  Score=212.83  Aligned_cols=145  Identities=16%  Similarity=0.159  Sum_probs=105.2

Q ss_pred             ceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCc
Q 024529           71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVP  150 (266)
Q Consensus        71 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~  150 (266)
                      +++++||.+++|++++|+||||||||||+++|+|+++|++|.|.+++...           +....         ...  
T Consensus       160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e-----------~~~~~---------~~~--  217 (330)
T 2pt7_A          160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEE-----------IVFKH---------HKN--  217 (330)
T ss_dssp             HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCC-----------CCCSS---------CSS--
T ss_pred             HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeec-----------ccccc---------chh--
Confidence            78999999999999999999999999999999999999999998765310           00000         000  


Q ss_pred             HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecC
Q 024529          151 EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHD  230 (266)
Q Consensus       151 ~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd  230 (266)
                               .+++   ..     .  |||+||++||+||..+|++|||||||+.   +. ..+++.+..-+.|+|++||+
T Consensus       218 ---------~i~~---~~-----g--gg~~~r~~la~aL~~~p~ilildE~~~~---e~-~~~l~~~~~g~~tvi~t~H~  274 (330)
T 2pt7_A          218 ---------YTQL---FF-----G--GNITSADCLKSCLRMRPDRIILGELRSS---EA-YDFYNVLCSGHKGTLTTLHA  274 (330)
T ss_dssp             ---------EEEE---EC-----B--TTBCHHHHHHHHTTSCCSEEEECCCCST---HH-HHHHHHHHTTCCCEEEEEEC
T ss_pred             ---------EEEE---Ee-----C--CChhHHHHHHHHhhhCCCEEEEcCCChH---HH-HHHHHHHhcCCCEEEEEEcc
Confidence                     0000   00     0  8999999999999999999999999982   22 23444444323479999999


Q ss_pred             HHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          231 EHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       231 ~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      .+ +...|||+++|.+|......-+.+...+
T Consensus       275 ~~-~~~~~dri~~l~~g~~~~~~~~~~~i~~  304 (330)
T 2pt7_A          275 GS-SEEAFIRLANMSSSNSAARNIKFESLIE  304 (330)
T ss_dssp             SS-HHHHHHHHHHHHHTSGGGTTSCHHHHHH
T ss_pred             cH-HHHHhhhheehhcCCcccCCCCHHHHHH
Confidence            99 5668999999988864212234444433

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=99.91  E-value=7.8e-24  Score=190.64  Aligned_cols=80  Identities=29%  Similarity=0.478  Sum_probs=68.4

Q ss_pred             cCCCCCCChHHHH------HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcC
Q 024529          169 LQPMYTLSGGQKS------RVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVE  239 (266)
Q Consensus       169 ~~~~~~LSgGqkq------Rv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d  239 (266)
                      ++++..|||||||      |+++|++|+.+|++|||||||+|||+..+..+.+.|.++   +.+||+||||.++ ..+||
T Consensus       243 ~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~-~~~~d  321 (339)
T 3qkt_A          243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEEL-KDAAD  321 (339)
T ss_dssp             EECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGG-GGGCS
T ss_pred             cCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHH-HHhCC
Confidence            4678899999999      678888899999999999999999999999998888653   4589999999765 56899


Q ss_pred             EEEEEe--CCeE
Q 024529          240 ELWVVS--EGKA  249 (266)
Q Consensus       240 ~i~~l~--~G~i  249 (266)
                      ++++|+  +|..
T Consensus       322 ~~~~l~~~~g~s  333 (339)
T 3qkt_A          322 HVIRISLENGSS  333 (339)
T ss_dssp             EEEEEEEETTEE
T ss_pred             EEEEEEecCCcc
Confidence            999885  4543

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.91  E-value=2.3e-26  Score=204.08  Aligned_cols=178  Identities=17%  Similarity=0.124  Sum_probs=126.3

Q ss_pred             eeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------------eeEEEEeccccCCCCC
Q 024529           72 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------------VRIAVFSQHHVDGLDL  134 (266)
Q Consensus        72 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------------~~i~~~~q~~~~~~~~  134 (266)
                      +.++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.                 ..++|++|++. ....
T Consensus        90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~-~~~~  168 (302)
T 3b9q_A           90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGD-KAKA  168 (302)
T ss_dssp             CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC---CCCH
T ss_pred             ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCC-ccCH
Confidence            46789999999999999999999999999999999999999987542                 13788887642 0111


Q ss_pred             CCcHHHHHHHh-CCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHH
Q 024529          135 SSNPLLYMMRC-FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH--IILLDEPSNHLDLDAVE  211 (266)
Q Consensus       135 ~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~--lllLDEPt~~LD~~~~~  211 (266)
                      ..+..+.+... ....+    ..+++.+|+.+ ..++++.+||   +||++|||||+.+|+  +|+|| ||+|||+....
T Consensus       169 ~~~v~e~l~~~~~~~~d----~~lldt~gl~~-~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~  239 (302)
T 3b9q_A          169 ATVLSKAVKRGKEEGYD----VVLCDTSGRLH-TNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA  239 (302)
T ss_dssp             HHHHHHHHHHHHHTTCS----EEEECCCCCSS-CCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH
T ss_pred             HHHHHHHHHHHHHcCCc----chHHhcCCCCc-chhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH
Confidence            11222222110 00111    12455667753 3456678899   999999999999999  99999 99999998643


Q ss_pred             HHHHHHh-hcCCEEEEEec---------CHHHHHhhcCEEEEEeCCeEEe--cCCChhHHHHH
Q 024529          212 ALIQGLV-LFQGGILMVSH---------DEHLISGSVEELWVVSEGKATP--FHGTFHDYKKM  262 (266)
Q Consensus       212 ~l~~~l~-~~~~tiiivtH---------d~~~~~~~~d~i~~l~~G~i~~--~~g~~~~~~~~  262 (266)
                         ..+. ..+.|+|++||         .++.+...+..|.++..|+...  ..-+++.+.+.
T Consensus       240 ---~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~~dl~~f~~~~~~~~  299 (302)
T 3b9q_A          240 ---REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVNA  299 (302)
T ss_dssp             ---HHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHH
T ss_pred             ---HHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCChhhcccCCHHHHHHH
Confidence               3343 45789999999         5667777888999999997521  12355555443

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=99.91  E-value=6.7e-24  Score=192.19  Aligned_cols=85  Identities=18%  Similarity=0.072  Sum_probs=75.6

Q ss_pred             CCCC-CCChHHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcC
Q 024529          170 QPMY-TLSGGQKSRVAFAKITF---------KKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVE  239 (266)
Q Consensus       170 ~~~~-~LSgGqkqRv~lAral~---------~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d  239 (266)
                      +++. .|||||+||++||++|+         .+|+||||||||++||+..+..+++.+.+...|+|++||. +.   .||
T Consensus       260 ~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~-~~---~~~  335 (359)
T 2o5v_A          260 FPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL-AP---GAA  335 (359)
T ss_dssp             EEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC-CT---TCS
T ss_pred             cchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec-cc---cCC
Confidence            3456 79999999999999999         8999999999999999999999999998877789999995 43   799


Q ss_pred             EEEEEeCCeEEecCCChhHH
Q 024529          240 ELWVVSEGKATPFHGTFHDY  259 (266)
Q Consensus       240 ~i~~l~~G~i~~~~g~~~~~  259 (266)
                      ++++|++|++. ..|+++++
T Consensus       336 ~i~~l~~G~i~-~~g~~~~~  354 (359)
T 2o5v_A          336 LTLRAQAGRFT-PVADEEMQ  354 (359)
T ss_dssp             EEEEEETTEEE-ECCCTTTS
T ss_pred             EEEEEECCEEE-ecCCHHHH
Confidence            99999999996 56877654

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=99.90  E-value=6.1e-25  Score=221.69  Aligned_cols=165  Identities=16%  Similarity=0.211  Sum_probs=116.1

Q ss_pred             CCcEEEEe-----eEEEcCCCCcceeeceEEEeC-------CcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeee
Q 024529           53 PPIISFSD-----ASFGYPGGPILFKNLNFGIDL-------DSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR  120 (266)
Q Consensus        53 ~~~l~~~~-----l~~~y~~~~~~l~~vsl~i~~-------Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~  120 (266)
                      .++|++++     |++.|+++..+++|++|++++       |++++|+||||||||||||+| |++.+-         ..
T Consensus       748 ~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~---------aq  817 (1022)
T 2o8b_B          748 PPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM---------AQ  817 (1022)
T ss_dssp             CCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH---------HT
T ss_pred             CceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH---------hh
Confidence            45799999     999995456799999999987       999999999999999999999 987642         12


Q ss_pred             EE-EEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 024529          121 IA-VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD  199 (266)
Q Consensus       121 i~-~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLD  199 (266)
                      +| |+||+.. .+.+....                   +..+|+.+.. ....+++|+++++ +++|++++.+|+++|||
T Consensus       818 iG~~Vpq~~~-~l~v~d~I-------------------~~rig~~d~~-~~~~stf~~em~~-~a~al~la~~~sLlLLD  875 (1022)
T 2o8b_B          818 MGCYVPAEVC-RLTPIDRV-------------------FTRLGASDRI-MSGESTFFVELSE-TASILMHATAHSLVLVD  875 (1022)
T ss_dssp             TTCCEESSEE-EECCCSBE-------------------EEECC----------CHHHHHHHH-HHHHHHHCCTTCEEEEE
T ss_pred             eeEEeccCcC-CCCHHHHH-------------------HHHcCCHHHH-hhchhhhHHHHHH-HHHHHHhCCCCcEEEEE
Confidence            44 7777642 11221111                   1234443322 2345678887775 99999999999999999


Q ss_pred             CCCCCCCHHHH----HHHHHHHhhc-CCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529          200 EPSNHLDLDAV----EALIQGLVLF-QGGILMVSHDEHLISGSVEELWVVSEGKAT  250 (266)
Q Consensus       200 EPt~~LD~~~~----~~l~~~l~~~-~~tiiivtHd~~~~~~~~d~i~~l~~G~i~  250 (266)
                      |||+|+|+...    ..+++.+.+. +.++|++||+.+++..+||++.++ +|++.
T Consensus       876 Ep~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~  930 (1022)
T 2o8b_B          876 ELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMA  930 (1022)
T ss_dssp             CTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEE
T ss_pred             CCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEE
Confidence            99999998763    2445556554 779999999999999999998876 47764

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.90  E-value=2.5e-27  Score=200.79  Aligned_cols=157  Identities=13%  Similarity=0.133  Sum_probs=103.9

Q ss_pred             cceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------------eeEEEEeccccCCCCCCCc
Q 024529           70 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRIAVFSQHHVDGLDLSSN  137 (266)
Q Consensus        70 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~i~~~~q~~~~~~~~~~~  137 (266)
                      .-|+||||+|++|++++|+||||||||||+++|+|++ |  |+|.+ +.            ..++|++|++..       
T Consensus        11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~-------   79 (218)
T 1z6g_A           11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTI-------   79 (218)
T ss_dssp             -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHH-------
T ss_pred             ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHH-------
Confidence            3589999999999999999999999999999999998 6  88876 31            134555554310       


Q ss_pred             HHHHHH------------HhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHH-----HHHHccCCCEEEEeC
Q 024529          138 PLLYMM------------RCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAF-----AKITFKKPHIILLDE  200 (266)
Q Consensus       138 ~~~~~~------------~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~l-----Aral~~~p~lllLDE  200 (266)
                       +..+.            ....+.....+.++++...+.  ..+   .+|||||+||++|     |++|+.+|++++|||
T Consensus        80 -~~~~~~~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~--il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde  153 (218)
T 1z6g_A           80 -FEDKLKNEDFLEYDNYANNFYGTLKSEYDKAKEQNKIC--LFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLS  153 (218)
T ss_dssp             -HHHHHHTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEE--EEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHH
T ss_pred             -HHHhhhccchhhhhhcccccCCCcHHHHHHHHhCCCcE--EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHH
Confidence             00000            000112345567777764432  222   5799999999999     899999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHhh----------cCCEEEEEecCHHHHHhhcCEEEE
Q 024529          201 PSNHLDLDAVEALIQGLVL----------FQGGILMVSHDEHLISGSVEELWV  243 (266)
Q Consensus       201 Pt~~LD~~~~~~l~~~l~~----------~~~tiiivtHd~~~~~~~~d~i~~  243 (266)
                      ||+++|..+...+.+.+..          ...+.|+++||.+.+...+++++.
T Consensus       154 ~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~ii~  206 (218)
T 1z6g_A          154 RLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNYLL  206 (218)
T ss_dssp             HHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHHHH
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHHHH
Confidence            9999998776666665542          234678899999888777766553

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=99.90  E-value=7.3e-26  Score=210.23  Aligned_cols=180  Identities=13%  Similarity=0.136  Sum_probs=130.9

Q ss_pred             CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe--------------
Q 024529           53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------  118 (266)
Q Consensus        53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------  118 (266)
                      +++++++++++.|+.+..+|+++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|...|.              
T Consensus       129 ~~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~  207 (438)
T 2dpy_A          129 FNPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILG  207 (438)
T ss_dssp             CCTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTH
T ss_pred             CCceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhcc
Confidence            35789999999996356799999 999999999999999999999999999999999999987664              


Q ss_pred             -----eeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCC-cccccCCCCCCChHHHHHHHHHHHHccC
Q 024529          119 -----VRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVT-GNLALQPMYTLSGGQKSRVAFAKITFKK  192 (266)
Q Consensus       119 -----~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~LSgGqkqRv~lAral~~~  192 (266)
                           ..++|++|.... .....+...+...         ..+.....+-. ..+.+ .+..||+|| ||++||   +.+
T Consensus       208 ~~~l~r~i~~v~q~~~~-~~~~~~v~~~~~~---------~ae~~~~~~~~v~~~ld-~l~~lS~g~-qrvslA---l~~  272 (438)
T 2dpy_A          208 PDGRARSVVIAAPADVS-PLLRMQGAAYATR---------IAEDFRDRGQHVLLIMD-SLTRYAMAQ-REIALA---IGE  272 (438)
T ss_dssp             HHHHHTEEEEEECTTSC-HHHHHHHHHHHHH---------HHHHHHTTTCEEEEEEE-CHHHHHHHH-HHHHHH---TTC
T ss_pred             ccccCceEEEEECCCCC-HHHHHHHHHHHHH---------HHHHHHhCCCCHHHHHH-hHHHHHHHH-HHHHHH---hCC
Confidence                 147888885211 0000011111100         01111111100 01111 357899999 999999   888


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhhcC------C------EEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChh
Q 024529          193 PHIILLDEPSNHLDLDAVEALIQGLVLFQ------G------GILMVSHDEHLISGSVEELWVVSEGKATPFHGTFH  257 (266)
Q Consensus       193 p~lllLDEPt~~LD~~~~~~l~~~l~~~~------~------tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~  257 (266)
                      |++      |+|||+.....+.+.+.+..      +      ||+++|||++  ..+||++++|.+|+++ ..++..
T Consensus       273 p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~dG~Iv-l~~~~~  340 (438)
T 2dpy_A          273 PPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSARAILDGHIV-LSRRLA  340 (438)
T ss_dssp             CCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHHHHSSEEEE-ECHHHH
T ss_pred             Ccc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEEEEeCcEEE-EeCCHH
Confidence            888      99999999999998886541      3      7999999998  5689999999999986 455443

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=99.90  E-value=3.6e-26  Score=206.38  Aligned_cols=181  Identities=15%  Similarity=0.169  Sum_probs=125.6

Q ss_pred             CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee-------------
Q 024529           53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-------------  119 (266)
Q Consensus        53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-------------  119 (266)
                      +++++++++++.|+.+..+++++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|...+..             
T Consensus        43 ~~~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~  121 (347)
T 2obl_A           43 PDPLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ  121 (347)
T ss_dssp             SCSTTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred             CCCeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh
Confidence            35789999999996456789999 9999999999999999999999999999999999988765421             


Q ss_pred             -----eEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 024529          120 -----RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH  194 (266)
Q Consensus       120 -----~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~  194 (266)
                           .+.+++|...       .....+....   ....+.+.+...+-.-...-..+..||+|| ||+++|   +.+|+
T Consensus       122 ~~~~~~v~~~~~~~~-------~~~~r~~~~~---~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~  187 (347)
T 2obl_A          122 STLSKCVLVVTTSDR-------PALERMKAAF---TATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEPD  187 (347)
T ss_dssp             HHHTTEEEEEECTTS-------CHHHHHHHHH---HHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCCC
T ss_pred             hhhhceEEEEECCCC-------CHHHHHHHHH---HHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCCCC
Confidence                 1222222110       0110000000   000011111111110000013567899999 899999   57887


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhc-----CC-----EEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChh
Q 024529          195 IILLDEPSNHLDLDAVEALIQGLVLF-----QG-----GILMVSHDEHLISGSVEELWVVSEGKATPFHGTFH  257 (266)
Q Consensus       195 lllLDEPt~~LD~~~~~~l~~~l~~~-----~~-----tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~  257 (266)
                      +      |+|||+.....+.+.+.+.     +.     ||+++|||++  ..+||++++|.+|+++ ..++..
T Consensus       188 ~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~dG~Iv-l~~~l~  251 (347)
T 2obl_A          188 V------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSILDGHIV-LTRELA  251 (347)
T ss_dssp             C------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHCSEEEE-BCHHHH
T ss_pred             c------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEeeCcEEE-EeCCHH
Confidence            7      9999999999999888754     23     7899999998  6789999999999996 555443

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.90  E-value=2.1e-27  Score=211.66  Aligned_cols=175  Identities=14%  Similarity=0.056  Sum_probs=126.6

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEE-----------------------EeCCcEEEEECCCCchHHHHHHHHhCCCCCCc
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFG-----------------------IDLDSRIAMVGPNGIGKSTILKLIAGELQPSS  110 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~-----------------------i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~  110 (266)
                      ..|++++|++.|.   ++++++++.                       +++|+++||+||||||||||+++|+|+++|+.
T Consensus        42 ~~i~~~~v~~~y~---p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~  118 (312)
T 3aez_A           42 EQIDLLEVEEVYL---PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWD  118 (312)
T ss_dssp             CCCCHHHHHHTHH---HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTST
T ss_pred             CeEEeeehhhhhh---hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccC
Confidence            3589999999993   466777764                       89999999999999999999999999999986


Q ss_pred             eEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHh--C--C-CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHH
Q 024529          111 GTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRC--F--P-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAF  185 (266)
Q Consensus       111 G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~--~--~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~l  185 (266)
                      |.      ..+++++|+....   ..+...+....  .  + ..+.+.+.+.++.++ .+ ..+.++..|||||+||+++
T Consensus       119 G~------~~v~~v~qd~~~~---~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~-~~-~~~~~~~~lS~G~~qRv~~  187 (312)
T 3aez_A          119 HH------PRVDLVTTDGFLY---PNAELQRRNLMHRKGFPESYNRRALMRFVTSVK-SG-SDYACAPVYSHLHYDIIPG  187 (312)
T ss_dssp             TC------CCEEEEEGGGGBC---CHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH-TT-CSCEEEEEEETTTTEEEEE
T ss_pred             CC------CeEEEEecCccCC---cccHHHHHHHHHhcCCChHHHHHHHHHHHHHhC-CC-cccCCcccCChhhhhhhhh
Confidence            64      4589999986421   11333332111  0  1 123456778888887 33 2345677999999999999


Q ss_pred             HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHH-HhhcCEEEEEeCC
Q 024529          186 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLI-SGSVEELWVVSEG  247 (266)
Q Consensus       186 Aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~-~~~~d~i~~l~~G  247 (266)
                      |++++.+|+|||||||+..+|+..     ..+.+.-..+|+|+|+.+.. ...++|.+.+.++
T Consensus       188 a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd~  245 (312)
T 3aez_A          188 AEQVVRHPDILILEGLNVLQTGPT-----LMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTT  245 (312)
T ss_dssp             EEEEECSCSEEEEECTTTTCCCSS-----CCGGGGCSEEEEEEECHHHHHHHHHHHHHHHTTT
T ss_pred             HHHhccCCCEEEECCccccCCcch-----HHHHHhcCcEEEEECCHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999998521     12333334678888988764 3345555545444

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.89  E-value=1.3e-24  Score=206.40  Aligned_cols=169  Identities=14%  Similarity=0.057  Sum_probs=121.1

Q ss_pred             cEEEEeeEEEcCCCCcceeec-eEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCC
Q 024529           55 IISFSDASFGYPGGPILFKNL-NFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD  133 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~v-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~  133 (266)
                      .++++++++.|++    |+.+ +..|.+|++++|+||||||||||+++++|+..|. |+      ..+.+.+|+...   
T Consensus       257 ~~~~~~l~~g~~~----ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~------~vi~~~~ee~~~---  322 (525)
T 1tf7_A          257 RSSNVRVSSGVVR----LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE------RAILFAYEESRA---  322 (525)
T ss_dssp             CCCCCEECCSCHH----HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC------CEEEEESSSCHH---
T ss_pred             ccccceeecChHH----HHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC------CEEEEEEeCCHH---
Confidence            3556666655521    2322 5589999999999999999999999999998875 43      113445554310   


Q ss_pred             CCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH-----
Q 024529          134 LSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLD-----  208 (266)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~-----  208 (266)
                         ...... ..+ +.+.+   + +...|+. ...+.++.+|||||+||+++|+++..+|++||+| ||++||..     
T Consensus       323 ---~l~~~~-~~~-g~~~~---~-~~~~g~~-~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~  391 (525)
T 1tf7_A          323 ---QLLRNA-YSW-GMDFE---E-MERQNLL-KIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNA  391 (525)
T ss_dssp             ---HHHHHH-HTT-SCCHH---H-HHHTTSE-EECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHH
T ss_pred             ---HHHHHH-HHc-CCCHH---H-HHhCCCE-EEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHH
Confidence               111111 111 22222   2 2234554 3445677899999999999999999999999999 99999998     


Q ss_pred             HHHHHHH---HHhhcCCEEEEEecCH----------HHHHhhcCEEEEEeCCe
Q 024529          209 AVEALIQ---GLVLFQGGILMVSHDE----------HLISGSVEELWVVSEGK  248 (266)
Q Consensus       209 ~~~~l~~---~l~~~~~tiiivtHd~----------~~~~~~~d~i~~l~~G~  248 (266)
                      .+..+.+   .+++.+.|||+|||+.          ..+..+||+|++|++|+
T Consensus       392 ~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge  444 (525)
T 1tf7_A          392 FRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE  444 (525)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence            7666544   4455678999999999          77888999999998876

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.89  E-value=4.9e-25  Score=199.49  Aligned_cols=177  Identities=17%  Similarity=0.134  Sum_probs=125.5

Q ss_pred             eeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------------eeEEEEeccccCCCCCC
Q 024529           73 KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------------VRIAVFSQHHVDGLDLS  135 (266)
Q Consensus        73 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------------~~i~~~~q~~~~~~~~~  135 (266)
                      .++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.                 ..++|++|++.. ....
T Consensus       148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~-~~p~  226 (359)
T 2og2_A          148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDK-AKAA  226 (359)
T ss_dssp             CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSS-CCHH
T ss_pred             CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccc-cChh
Confidence            4689999999999999999999999999999999999999987542                 137888876420 1111


Q ss_pred             CcHHHHHHHh-CCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHH
Q 024529          136 SNPLLYMMRC-FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH--IILLDEPSNHLDLDAVEA  212 (266)
Q Consensus       136 ~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~--lllLDEPt~~LD~~~~~~  212 (266)
                      .+....+... ....+    ..+++.+|+.. ..++.+.+||   +||++|||+|+.+|+  +|+|| ||+|||+.... 
T Consensus       227 ~tv~e~l~~~~~~~~d----~~lldt~Gl~~-~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~-  296 (359)
T 2og2_A          227 TVLSKAVKRGKEEGYD----VVLCDTSGRLH-TNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA-  296 (359)
T ss_dssp             HHHHHHHHHHHHTTCS----EEEEECCCCSS-CCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH-
T ss_pred             hhHHHHHHHHHhCCCH----HHHHHhcCCCh-hhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH-
Confidence            1222222110 00111    12455667753 3455678899   999999999999999  99999 99999998653 


Q ss_pred             HHHHHh-hcCCEEEEEec---------CHHHHHhhcCEEEEEeCCeEEe--cCCChhHHHHH
Q 024529          213 LIQGLV-LFQGGILMVSH---------DEHLISGSVEELWVVSEGKATP--FHGTFHDYKKM  262 (266)
Q Consensus       213 l~~~l~-~~~~tiiivtH---------d~~~~~~~~d~i~~l~~G~i~~--~~g~~~~~~~~  262 (266)
                        ..+. ..+.|+|++||         .+..+...+..|.++..|+...  ..-+++.|...
T Consensus       297 --~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~~~Dl~~f~~~~~~~~  356 (359)
T 2og2_A          297 --REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVNA  356 (359)
T ss_dssp             --HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHH
T ss_pred             --HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCChHhccCCCHHHHHHH
Confidence              2343 45789999999         4667777788999999997421  12355555443

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.89  E-value=2.7e-27  Score=198.68  Aligned_cols=163  Identities=12%  Similarity=0.021  Sum_probs=95.0

Q ss_pred             CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcC-------eeeEEEEeccccCCC--CCCCcHH
Q 024529           69 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA-------KVRIAVFSQHHVDGL--DLSSNPL  139 (266)
Q Consensus        69 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~-------~~~i~~~~q~~~~~~--~~~~~~~  139 (266)
                      ..+++|  .+|++|++++|+||||||||||+|+|+|+++...+.+....       ...++|++|++....  ....+..
T Consensus         9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~   86 (207)
T 1znw_A            9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELL   86 (207)
T ss_dssp             ------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEE
T ss_pred             CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCce
Confidence            346777  79999999999999999999999999999863322211110       123667776532100  0000000


Q ss_pred             HH--HHH--hCCCCcHHHHHHH----------HHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCC
Q 024529          140 LY--MMR--CFPGVPEQKLRAH----------LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHL  205 (266)
Q Consensus       140 ~~--~~~--~~~~~~~~~~~~~----------l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~L  205 (266)
                      ..  ...  ...+.....+.+.          ++.+++. ...++++..||           +|+.+|++++|||||+++
T Consensus        87 ~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~lS-----------~l~~~p~~~~LDep~~~l  154 (207)
T 1znw_A           87 EWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGAR-AIKKTMPEAVT-----------VFLAPPSWQDLQARLIGR  154 (207)
T ss_dssp             EEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHH-HHHHHCTTSEE-----------EEEECSCHHHHHHHHHTT
T ss_pred             eehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHH-HHHHhcCCcEE-----------EEEECCCHHHHHHHHHhc
Confidence            00  000  0001122222222          3333442 23345566677           899999999999999998


Q ss_pred             ----CHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEe
Q 024529          206 ----DLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVS  245 (266)
Q Consensus       206 ----D~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~  245 (266)
                          |+..+..+.+.+.+    .+.|+|+||||++++..+||++++|.
T Consensus       155 ~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~  202 (207)
T 1znw_A          155 GTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT  202 (207)
T ss_dssp             SCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred             CCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence                67777777666543    35699999999999999999999884

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=99.88  E-value=7.8e-23  Score=204.35  Aligned_cols=155  Identities=17%  Similarity=0.144  Sum_probs=109.6

Q ss_pred             CcEEEEeeEEEcC----CCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHH--------hCCCCCCceEEEEcCeeeE
Q 024529           54 PIISFSDASFGYP----GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLI--------AGELQPSSGTVFRSAKVRI  121 (266)
Q Consensus        54 ~~l~~~~l~~~y~----~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l--------~Gl~~p~~G~i~~~~~~~i  121 (266)
                      ..+.+++...-+-    +...+++|++|++++|++++|+||||||||||||++        .|.+.|.++...       
T Consensus       630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~-------  702 (934)
T 3thx_A          630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEV-------  702 (934)
T ss_dssp             CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEE-------
T ss_pred             cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccc-------
Confidence            3577777654431    234688999999999999999999999999999999        666555443211       


Q ss_pred             EEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHH--ccCCCEEEEe
Q 024529          122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT--FKKPHIILLD  199 (266)
Q Consensus       122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral--~~~p~lllLD  199 (266)
                      +.+.                              .++..+|+.+    .....+|+|+.++..+|+++  +.+|+++|||
T Consensus       703 ~~~d------------------------------~i~~~ig~~d----~l~~~lStf~~e~~~~a~il~~a~~~sLlLLD  748 (934)
T 3thx_A          703 SIVD------------------------------CILARVGAGD----SQLKGVSTFMAEMLETASILRSATKDSLIIID  748 (934)
T ss_dssp             ECCS------------------------------EEEEECC-------------CHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             hHHH------------------------------HHHHhcCchh----hHHHhHhhhHHHHHHHHHHHHhccCCcEEEEe
Confidence            1000                              1122334332    12356888888888888888  9999999999


Q ss_pred             CCCCCCCHHHHHHH----HHHHhh-cCCEEEEEecCHHHHHhhcCEEEEEeCCeEE
Q 024529          200 EPSNHLDLDAVEAL----IQGLVL-FQGGILMVSHDEHLISGSVEELWVVSEGKAT  250 (266)
Q Consensus       200 EPt~~LD~~~~~~l----~~~l~~-~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~  250 (266)
                      |||+|+|+.....+    ++.+.+ .+.++|++||+.++. .+||++..+.+|++.
T Consensus       749 Ep~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~-~lad~~~~v~ng~v~  803 (934)
T 3thx_A          749 ELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT-ALANQIPTVNNLHVT  803 (934)
T ss_dssp             SCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG-GGGGTCTTEEEEEEE
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH-HHhcccceeEeeEEE
Confidence            99999999865544    455554 478999999998766 589998888888874

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=99.88  E-value=7.3e-23  Score=180.47  Aligned_cols=172  Identities=15%  Similarity=0.107  Sum_probs=105.9

Q ss_pred             cceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCce-EEEE-cCee-------eEEEEeccccCCCCCCCcHHH
Q 024529           70 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG-TVFR-SAKV-------RIAVFSQHHVDGLDLSSNPLL  140 (266)
Q Consensus        70 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~-~~~~-------~i~~~~q~~~~~~~~~~~~~~  140 (266)
                      .+|+++++.+++|++++|+||||||||||+++|+|...|++| .|.+ ....       ++..+.+.    .........
T Consensus        23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~----~~~~~~~~l   98 (296)
T 1cr0_A           23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNR----VRLRQSDSL   98 (296)
T ss_dssp             TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTT----CCGGGCHHH
T ss_pred             HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcC----CChhhcccc
Confidence            478999999999999999999999999999999999998877 5532 2110       00000000    000000000


Q ss_pred             HHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHH-HHHHHHHHHHccCCCEEEEeCCCC---C---CCH-HHHHH
Q 024529          141 YMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQ-KSRVAFAKITFKKPHIILLDEPSN---H---LDL-DAVEA  212 (266)
Q Consensus       141 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq-kqRv~lAral~~~p~lllLDEPt~---~---LD~-~~~~~  212 (266)
                      ...........+.+.++++...+.  +. ..+..+|.+| +||+. |+++..+|++||+||||+   +   +|. .....
T Consensus        99 ~~~~~~~~~~~~~~~~~l~~~~l~--i~-~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~  174 (296)
T 1cr0_A           99 KREIIENGKFDQWFDELFGNDTFH--LY-DSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDN  174 (296)
T ss_dssp             HHHHHHHTHHHHHHHHHHSSSCEE--EE-CCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHH
T ss_pred             ccCCCCHHHHHHHHHHHhccCCEE--EE-CCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHH
Confidence            000000000011223333333331  22 2336789999 56666 999999999999999999   5   454 55556


Q ss_pred             HHHHHh----hcCCEEEEEecCH--H--------------------HHHhhcCEEEEEeCCeE
Q 024529          213 LIQGLV----LFQGGILMVSHDE--H--------------------LISGSVEELWVVSEGKA  249 (266)
Q Consensus       213 l~~~l~----~~~~tiiivtHd~--~--------------------~~~~~~d~i~~l~~G~i  249 (266)
                      +.+.|+    +.+.+||++||+.  +                    .+..+||+|++|++|+.
T Consensus       175 i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~  237 (296)
T 1cr0_A          175 LMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ  237 (296)
T ss_dssp             HHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred             HHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence            666553    3478999999995  4                    77889999999988764

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=99.87  E-value=9.8e-25  Score=189.84  Aligned_cols=140  Identities=18%  Similarity=0.206  Sum_probs=100.7

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCC-ceEEEEcCeeeEEEEeccccCCCC
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS-SGTVFRSAKVRIAVFSQHHVDGLD  133 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~~~~~i~~~~q~~~~~~~  133 (266)
                      +++++++++.     .+|+++|  +++|++++|+||||||||||+++|+|+++|+ +|+|...+.. +.|++|....   
T Consensus         5 ~~~l~~l~~~-----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~-i~~~~~~~~~---   73 (261)
T 2eyu_A            5 IPEFKKLGLP-----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP-IEYVFKHKKS---   73 (261)
T ss_dssp             -CCGGGSSCC-----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS-CCSCCCCSSS---
T ss_pred             CCChHHCCCH-----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc-ceeecCCcce---
Confidence            3556777642     4889999  8999999999999999999999999999998 9999765431 2222221100   


Q ss_pred             CCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH
Q 024529          134 LSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL  213 (266)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l  213 (266)
                                 .   ..+       ..+++..       ..|      |++||++|..+|++|++||||   |+.+...+
T Consensus        74 -----------~---v~q-------~~~gl~~-------~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~  116 (261)
T 2eyu_A           74 -----------I---VNQ-------REVGEDT-------KSF------ADALRAALREDPDVIFVGEMR---DLETVETA  116 (261)
T ss_dssp             -----------E---EEE-------EEBTTTB-------SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHH
T ss_pred             -----------e---eeH-------HHhCCCH-------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHH
Confidence                       0   000       1233321       122      899999999999999999999   99988776


Q ss_pred             HHHHhhcCCEEEEEecCHHHHHhhcCEEEEE
Q 024529          214 IQGLVLFQGGILMVSHDEHLISGSVEELWVV  244 (266)
Q Consensus       214 ~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l  244 (266)
                      ++.. ..+.+|+++||+.+ +...||+++.|
T Consensus       117 l~~~-~~g~~vl~t~H~~~-~~~~~dri~~l  145 (261)
T 2eyu_A          117 LRAA-ETGHLVFGTLHTNT-AIDTIHRIVDI  145 (261)
T ss_dssp             HHHH-HTTCEEEEEECCSS-HHHHHHHHHHT
T ss_pred             HHHH-ccCCEEEEEeCcch-HHHHHHHHhhh
Confidence            6654 44779999999987 44567776544

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.87  E-value=1.2e-25  Score=213.46  Aligned_cols=166  Identities=9%  Similarity=-0.002  Sum_probs=108.7

Q ss_pred             cEEEEeeEEEcCCCCcceeeceE-EEeCCcEEEEECCCCchHHHHHHH--HhCCCCCCceEEEEcCee----------eE
Q 024529           55 IISFSDASFGYPGGPILFKNLNF-GIDLDSRIAMVGPNGIGKSTILKL--IAGELQPSSGTVFRSAKV----------RI  121 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl-~i~~Ge~~~l~G~nGsGKSTLl~~--l~Gl~~p~~G~i~~~~~~----------~i  121 (266)
                      +++.+++.+.+ ++..+|++++| .|++|++++|+||||||||||+++  ++|+++|++|.|++.+..          .+
T Consensus        12 ~~~~~~~~~~~-~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~   90 (525)
T 1tf7_A           12 NSEHQAIAKMR-TMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSF   90 (525)
T ss_dssp             --CCSSCCEEC-CCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGG
T ss_pred             Ccccccccccc-CCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHc
Confidence            35555665544 56679999999 999999999999999999999999  789999999999876531          23


Q ss_pred             EEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCc-ccccCCCCCCChHHHHHHHHHHHHc-cCCCEEEEe
Q 024529          122 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTG-NLALQPMYTLSGGQKSRVAFAKITF-KKPHIILLD  199 (266)
Q Consensus       122 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGqkqRv~lAral~-~~p~lllLD  199 (266)
                      ||++|++.....                        +..+.... .....-...+.-++ +.-.++.+|. .+|++++||
T Consensus        91 g~~~q~~~~~~~------------------------l~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~g~~~~lilD  145 (525)
T 1tf7_A           91 GWDLAKLVDEGK------------------------LFILDASPDPEGQEVVGGFDLSA-LIERINYAIQKYRARRVSID  145 (525)
T ss_dssp             TCCHHHHHHTTS------------------------EEEEECCCCSSCCSCCSSHHHHH-HHHHHHHHHHHHTCSEEEEE
T ss_pred             CCChHHhhccCc------------------------EEEEecCcccchhhhhcccCHHH-HHHHHHHHHHHcCCCEEEEC
Confidence            333333210000                        00000000 00000111222222 2333444442 578999999


Q ss_pred             CCCCC-----CCHHHHHHHHHHHh---hcCCEEEEEecCHHHH---------HhhcCEEEEEeC
Q 024529          200 EPSNH-----LDLDAVEALIQGLV---LFQGGILMVSHDEHLI---------SGSVEELWVVSE  246 (266)
Q Consensus       200 EPt~~-----LD~~~~~~l~~~l~---~~~~tiiivtHd~~~~---------~~~~d~i~~l~~  246 (266)
                      |||+.     ||+..+..+.+.++   +.+.|||++||+++++         ..+||+|++|++
T Consensus       146 e~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~  209 (525)
T 1tf7_A          146 SVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN  209 (525)
T ss_dssp             CSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred             CHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence            99984     68888777766554   4578999999999884         556999999988

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.87  E-value=1.9e-24  Score=188.88  Aligned_cols=139  Identities=12%  Similarity=0.098  Sum_probs=86.3

Q ss_pred             EEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe--------eeEEEEeccccCCC--CCCCcHHHHHHHhCCCCcHHH
Q 024529           84 RIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------VRIAVFSQHHVDGL--DLSSNPLLYMMRCFPGVPEQK  153 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------~~i~~~~q~~~~~~--~~~~~~~~~~~~~~~~~~~~~  153 (266)
                      .++|+||||||||||+|+|+|+..|++|+|.+.+.        ..+++++|+.....  ++..++... .........+.
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g-~~~~~~~~~~~   82 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFG-DQINNENCWEP   82 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC---CCSBCTTCSHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhh-hhcccHHHHHH
Confidence            48999999999999999999999999999987653        36899998753211  111121110 00001111233


Q ss_pred             HHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHH
Q 024529          154 LRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHL  233 (266)
Q Consensus       154 ~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~  233 (266)
                      +.+++.     ....+..+.+|||||+||+++|||++.   +++||||+++||+.. ..+++.+.+. .+||+|.|..+.
T Consensus        83 i~~~~~-----~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD-~~~l~~L~~~-~~vI~Vi~K~D~  152 (270)
T 3sop_A           83 IEKYIN-----EQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD-LEFMKHLSKV-VNIIPVIAKADT  152 (270)
T ss_dssp             HHHHHH-----HHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH-HHHHHHHHTT-SEEEEEETTGGG
T ss_pred             HHHHHH-----HHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH-HHHHHHHHhc-CcEEEEEecccc
Confidence            444433     123345667999999999999999886   999999999999987 4556666665 788888887653

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.86  E-value=1e-21  Score=195.62  Aligned_cols=106  Identities=27%  Similarity=0.379  Sum_probs=93.0

Q ss_pred             HHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEe
Q 024529          154 LRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH--IILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVS  228 (266)
Q Consensus       154 ~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~--lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivt  228 (266)
                      ..+.|..+|+.....++++.+|||||+|||+|||||+++|+  +|||||||+|||+....++++.|++.   +.|||+||
T Consensus       444 ~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVt  523 (916)
T 3pih_A          444 RLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVE  523 (916)
T ss_dssp             HHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEEC
T ss_pred             HHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence            45678889997544678999999999999999999999887  99999999999999999988888754   56999999


Q ss_pred             cCHHHHHhhcCEEEEE------eCCeEEecCCChhHHHH
Q 024529          229 HDEHLISGSVEELWVV------SEGKATPFHGTFHDYKK  261 (266)
Q Consensus       229 Hd~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~~  261 (266)
                      ||++++.. ||+|++|      ++|+++ +.|+++++.+
T Consensus       524 Hd~~~~~~-aD~ii~lgpgag~~~G~iv-~~G~~~e~~~  560 (916)
T 3pih_A          524 HDEEVIRN-ADHIIDIGPGGGTNGGRVV-FQGTVDELLK  560 (916)
T ss_dssp             CCHHHHHT-CSEEEEEESSSGGGCSEEE-EEECHHHHHH
T ss_pred             CCHHHHHh-CCEEEEEcCCcccCCCEEE-Eeechhhhhc
Confidence            99999875 9999999      889986 7899998754

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=99.86  E-value=1.8e-22  Score=198.32  Aligned_cols=145  Identities=20%  Similarity=0.198  Sum_probs=107.6

Q ss_pred             CcEEEEeeEEEcC--CCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC-CCceEEEEcCeeeEEEEeccccC
Q 024529           54 PIISFSDASFGYP--GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-PSSGTVFRSAKVRIAVFSQHHVD  130 (266)
Q Consensus        54 ~~l~~~~l~~~y~--~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~~~~~i~~~~q~~~~  130 (266)
                      ..|.+++...-.-  ++..+++|+||+   |++++|+||||||||||||+|+|+.. ++.|.+.......+++++|-.  
T Consensus       549 ~~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~i~--  623 (765)
T 1ewq_A          549 DRLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIY--  623 (765)
T ss_dssp             SSEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSEEE--
T ss_pred             CcEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeehhccceeeHHHhh--
Confidence            3577887743220  235689999999   99999999999999999999999864 677865433333444444311  


Q ss_pred             CCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHH--ccCCCEEEEeCC---CCCC
Q 024529          131 GLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT--FKKPHIILLDEP---SNHL  205 (266)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral--~~~p~lllLDEP---t~~L  205 (266)
                                                  ..++..+.+    ...+|+|+++++.+|+++  +.+|+++|||||   |++|
T Consensus       624 ----------------------------~~~~~~d~l----~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~l  671 (765)
T 1ewq_A          624 ----------------------------TRIGASDDL----AGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSL  671 (765)
T ss_dssp             ----------------------------EECCC----------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHH
T ss_pred             ----------------------------ccCCHHHHH----HhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCc
Confidence                                        111111111    124799999999999999  999999999999   9999


Q ss_pred             CHHHH-HHHHHHHhhcCCEEEEEecCHHHHH
Q 024529          206 DLDAV-EALIQGLVLFQGGILMVSHDEHLIS  235 (266)
Q Consensus       206 D~~~~-~~l~~~l~~~~~tiiivtHd~~~~~  235 (266)
                      |+.+. ..+++.+.+.+.++|++||+.++..
T Consensus       672 D~~~~~~~i~~~L~~~g~~vl~~TH~~~l~~  702 (765)
T 1ewq_A          672 DGVAIATAVAEALHERRAYTLFATHYFELTA  702 (765)
T ss_dssp             HHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred             CHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence            99876 5788888877789999999998865

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=99.86  E-value=1.2e-21  Score=156.24  Aligned_cols=80  Identities=25%  Similarity=0.442  Sum_probs=70.3

Q ss_pred             cCCCCCCChHHHHHHHHH------HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcC
Q 024529          169 LQPMYTLSGGQKSRVAFA------KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVE  239 (266)
Q Consensus       169 ~~~~~~LSgGqkqRv~lA------ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d  239 (266)
                      ++++.+||||||||++||      |||+.+|++|||||||+|||+.++..+.+.+.+.   +.|||+||||.+ +..+||
T Consensus        52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~d  130 (148)
T 1f2t_B           52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAAD  130 (148)
T ss_dssp             EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGCS
T ss_pred             cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH-HHHhCC
Confidence            567899999999999876      8999999999999999999999999998888764   469999999995 567999


Q ss_pred             EEEEE--eCCeE
Q 024529          240 ELWVV--SEGKA  249 (266)
Q Consensus       240 ~i~~l--~~G~i  249 (266)
                      ++++|  .+|..
T Consensus       131 ~ii~l~~~~g~s  142 (148)
T 1f2t_B          131 HVIRISLENGSS  142 (148)
T ss_dssp             EEEEEEEETTEE
T ss_pred             EEEEEEcCCCeE
Confidence            99999  45654

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=99.86  E-value=8.1e-23  Score=203.74  Aligned_cols=152  Identities=15%  Similarity=0.158  Sum_probs=99.5

Q ss_pred             cEEEEeeEEEc-----C-CCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC-CceEEEEcCeeeEEEEecc
Q 024529           55 IISFSDASFGY-----P-GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-SSGTVFRSAKVRIAVFSQH  127 (266)
Q Consensus        55 ~l~~~~l~~~y-----~-~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~~~~~i~~~~q~  127 (266)
                      .|.+++...-.     + ++..+++|+||++++|++++|+||||||||||||+++++.-. ..|.........++++   
T Consensus       640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~---  716 (918)
T 3thx_B          640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIV---  716 (918)
T ss_dssp             EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECC---
T ss_pred             cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHH---
Confidence            57777654322     1 245789999999999999999999999999999999764211 1110000000001100   


Q ss_pred             ccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCH
Q 024529          128 HVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL  207 (266)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~  207 (266)
                                                 ..++..+++.+. ..+..+++|+||+|++.++++ +.+|+++||||||+|||+
T Consensus       717 ---------------------------d~i~~~ig~~d~-l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~  767 (918)
T 3thx_B          717 ---------------------------DGIFTRMGAADN-IYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTST  767 (918)
T ss_dssp             ---------------------------SEEEEEC-----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCH
T ss_pred             ---------------------------HHHHHhCChHHH-HHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCH
Confidence                                       012233444332 235568899999999999999 899999999999999999


Q ss_pred             HHHHHHH----HHHhh-cCCEEEEEecCHHHHHhhcC
Q 024529          208 DAVEALI----QGLVL-FQGGILMVSHDEHLISGSVE  239 (266)
Q Consensus       208 ~~~~~l~----~~l~~-~~~tiiivtHd~~~~~~~~d  239 (266)
                      .....+.    +.+.+ .+.++|++||+.+++. +||
T Consensus       768 ~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~-l~~  803 (918)
T 3thx_B          768 HDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCE-LEK  803 (918)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG-HHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHH-HHh
Confidence            8766554    44433 4779999999988764 454

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.85  E-value=3.9e-23  Score=177.73  Aligned_cols=161  Identities=14%  Similarity=0.114  Sum_probs=95.4

Q ss_pred             CCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEc-CeeeEEEEeccccCCCCCCCcHHHHHHH-
Q 024529           67 GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS-AKVRIAVFSQHHVDGLDLSSNPLLYMMR-  144 (266)
Q Consensus        67 ~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~-~~~~i~~~~q~~~~~~~~~~~~~~~~~~-  144 (266)
                      ++..+|+|+||++++|+++||+||||||||||+++|+|++    |.+.++ ....++|++|+.+. .  ..+....... 
T Consensus        10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~~~~~~i~~v~~d~~~-~--~l~~~~~~~~~   82 (245)
T 2jeo_A           10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVEQRQRKVVILSQDRFY-K--VLTAEQKAKAL   82 (245)
T ss_dssp             -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSCGGGCSEEEEEGGGGB-C--CCCHHHHHHHH
T ss_pred             CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhcccccCCceEEEeCCcCc-c--ccCHhHhhhhh
Confidence            3456899999999999999999999999999999999975    333221 12357889987531 1  1223222211 


Q ss_pred             -h-CC-----CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 024529          145 -C-FP-----GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL  217 (266)
Q Consensus       145 -~-~~-----~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l  217 (266)
                       . +.     ....+.+.+.++.+.   .....++..||+||+||+++ ++++.+|+++|||||....|..-    .+  
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~L~~l~---~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~l----~~--  152 (245)
T 2jeo_A           83 KGQYNFDHPDAFDNDLMHRTLKNIV---EGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQEI----RD--  152 (245)
T ss_dssp             TTCCCTTSGGGBCHHHHHHHHHHHH---TTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHHH----HT--
T ss_pred             ccCCCCCCcccccHHHHHHHHHHHH---CCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHHH----HH--
Confidence             1 10     012334455555431   22345678999999999988 68889999999999988887641    11  


Q ss_pred             hhcCCEEEEEecC-HHHHHhhcCEEEEEeCCe
Q 024529          218 VLFQGGILMVSHD-EHLISGSVEELWVVSEGK  248 (266)
Q Consensus       218 ~~~~~tiiivtHd-~~~~~~~~d~i~~l~~G~  248 (266)
                       ..+.+|+++||+ ......+++++   ++|+
T Consensus       153 -~~~~~i~v~th~~~~~~r~~~r~~---~~G~  180 (245)
T 2jeo_A          153 -MFHLRLFVDTDSDVRLSRRVLRDV---RRGR  180 (245)
T ss_dssp             -TCSEEEEEECCHHHHHHHHHHHHT---C---
T ss_pred             -hcCeEEEEECCHHHHHHHHHHHHH---HcCC
Confidence             135689999997 44444455444   5554

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=99.85  E-value=1.7e-23  Score=173.53  Aligned_cols=140  Identities=21%  Similarity=0.208  Sum_probs=98.3

Q ss_pred             CcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcC---------eeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHH
Q 024529           82 DSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA---------KVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQ  152 (266)
Q Consensus        82 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~---------~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (266)
                      |++++|+||||||||||+++|+|+++ ++| |.+++         ...++|++|... ..   ...              
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~~-g~---~~~--------------   60 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTLS-GT---RGP--------------   60 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEETT-SC---EEE--------------
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEecc-cc---eeh--------------
Confidence            78999999999999999999999998 888 76543         235778877641 10   000              


Q ss_pred             HHHHHHHhcCCCc------ccccCCCCCCChHHHHHH-HHHH---HHccCCCEEEEeC--CCCCCCHHHHHHHHHHHhhc
Q 024529          153 KLRAHLGSFGVTG------NLALQPMYTLSGGQKSRV-AFAK---ITFKKPHIILLDE--PSNHLDLDAVEALIQGLVLF  220 (266)
Q Consensus       153 ~~~~~l~~~~l~~------~~~~~~~~~LSgGqkqRv-~lAr---al~~~p~lllLDE--Pt~~LD~~~~~~l~~~l~~~  220 (266)
                           +..+++..      ....++...+|+|||+++ ++++   |++.+|++|||||  |++.+|+...+.+.+.+...
T Consensus        61 -----l~~~~~~~~~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~  135 (189)
T 2i3b_A           61 -----LSRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTP  135 (189)
T ss_dssp             -----EEECCCCCCSSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCS
T ss_pred             -----hhcccccCCccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCC
Confidence                 00111110      122345567999999988 4454   5899999999999  99999999988888888865


Q ss_pred             CCEEE---EEecCH--HHHHhhcCEEEEEeCCeEE
Q 024529          221 QGGIL---MVSHDE--HLISGSVEELWVVSEGKAT  250 (266)
Q Consensus       221 ~~tii---ivtHd~--~~~~~~~d~i~~l~~G~i~  250 (266)
                      ..+||   .||||.  .+++++++    +.+|+++
T Consensus       136 ~~~ilgti~vsh~~~~~~vd~i~~----~~~~~i~  166 (189)
T 2i3b_A          136 GTIILGTIPVPKGKPLALVEEIRN----RKDVKVF  166 (189)
T ss_dssp             SCCEEEECCCCCSSCCTTHHHHHT----TCCSEEE
T ss_pred             CcEEEEEeecCCCCchHHHHHHee----cCCcEEE
Confidence            44443   455987  56666654    4566664

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=99.84  E-value=5.8e-21  Score=161.18  Aligned_cols=153  Identities=15%  Similarity=0.220  Sum_probs=85.8

Q ss_pred             EEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHH
Q 024529           78 GIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAH  157 (266)
Q Consensus        78 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (266)
                      -|++|++++|+||||||||||+++|+|+..+..|.....+  ...|+....    .........+.... ....+   .+
T Consensus        21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~--~~i~~~~~~----~~~~~~i~~~~~~~-~~~~~---~~   90 (231)
T 4a74_A           21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNG--SVIWIDTEN----TFRPERIREIAQNR-GLDPD---EV   90 (231)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSC--EEEEEESSS----CCCHHHHHHHHHHT-TSCHH---HH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCC--EEEEEECCC----CCCHHHHHHHHHHc-CCCHH---HH
Confidence            6899999999999999999999999996655322211111  111222211    01111111222211 12222   22


Q ss_pred             HHhcCCCcccccCCCCCCChHHH-HHHHHHHHHcc-------CCCEEEEeCCCCCCCHH-------H-----HHHHHHHH
Q 024529          158 LGSFGVTGNLALQPMYTLSGGQK-SRVAFAKITFK-------KPHIILLDEPSNHLDLD-------A-----VEALIQGL  217 (266)
Q Consensus       158 l~~~~l~~~~~~~~~~~LSgGqk-qRv~lAral~~-------~p~lllLDEPt~~LD~~-------~-----~~~l~~~l  217 (266)
                      .+.+.+        ...++++++ +.+..++.++.       +|+++++||||+++|+.       .     ...+++.|
T Consensus        91 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l  162 (231)
T 4a74_A           91 LKHIYV--------ARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADL  162 (231)
T ss_dssp             HHTEEE--------EECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHH
T ss_pred             hhcEEE--------EecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHH
Confidence            222211        123444443 33555565555       99999999999999983       1     12344333


Q ss_pred             ----hhcCCEEEEEec----CHHHHHhhcCEEEEEeCCe
Q 024529          218 ----VLFQGGILMVSH----DEHLISGSVEELWVVSEGK  248 (266)
Q Consensus       218 ----~~~~~tiiivtH----d~~~~~~~~d~i~~l~~G~  248 (266)
                          ++.+.|||+|||    +-..+..+||++++|++|+
T Consensus       163 ~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~  201 (231)
T 4a74_A          163 HRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK  201 (231)
T ss_dssp             HHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred             HHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence                345789999999    5555888999999998753

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.83  E-value=6.7e-21  Score=189.19  Aligned_cols=102  Identities=25%  Similarity=0.299  Sum_probs=88.5

Q ss_pred             HHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHh---hcCCEEEEEecCH
Q 024529          157 HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP--HIILLDEPSNHLDLDAVEALIQGLV---LFQGGILMVSHDE  231 (266)
Q Consensus       157 ~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p--~lllLDEPt~~LD~~~~~~l~~~l~---~~~~tiiivtHd~  231 (266)
                      .|..+|+.....++++.+|||||+|||+||++|..+|  ++|||||||++||+...+++++.|+   +.+.|||+||||+
T Consensus       487 ~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl  566 (972)
T 2r6f_A          487 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE  566 (972)
T ss_dssp             HHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred             HhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence            4778898643467899999999999999999999985  9999999999999999888877665   4578999999999


Q ss_pred             HHHHhhcCEEEEE------eCCeEEecCCChhHHH
Q 024529          232 HLISGSVEELWVV------SEGKATPFHGTFHDYK  260 (266)
Q Consensus       232 ~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~  260 (266)
                      +++. .||+|++|      ++|+++ +.|+++++.
T Consensus       567 ~~i~-~ADrIi~LgpgaG~~gG~iv-~~G~~~e~~  599 (972)
T 2r6f_A          567 DTML-AADYLIDIGPGAGIHGGEVV-AAGTPEEVM  599 (972)
T ss_dssp             HHHH-SCSEEEEECSSSGGGCCSEE-EEECTTTTT
T ss_pred             HHHH-hCCEEEEeCCCccCCCCEEE-EecCHHHHH
Confidence            9986 69999999      688886 788887764

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=99.82  E-value=2e-20  Score=157.82  Aligned_cols=164  Identities=12%  Similarity=0.039  Sum_probs=103.0

Q ss_pred             CcceeeceE-EEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCC
Q 024529           69 PILFKNLNF-GIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP  147 (266)
Q Consensus        69 ~~~l~~vsl-~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~  147 (266)
                      ...|+++.+ .+++|++++|+||||||||||++.|++...+.+|.+.+        +..+.      ............ 
T Consensus         9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~--------~~~~~------~~~~~~~~~~~~-   73 (235)
T 2w0m_A            9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIY--------VTTEE------SRDSIIRQAKQF-   73 (235)
T ss_dssp             CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEE--------EESSS------CHHHHHHHHHHT-
T ss_pred             chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEE--------EEccc------CHHHHHHHHHHh-
Confidence            456888887 89999999999999999999999999887777776643        11110      000110000000 


Q ss_pred             CCcHHHHH-HHHHhcCC-Cccc-ccCCCCCCChHHHHHHHHHHHHccCCC--EEEEeCCCCCC--CHHHHHHHHHHHh--
Q 024529          148 GVPEQKLR-AHLGSFGV-TGNL-ALQPMYTLSGGQKSRVAFAKITFKKPH--IILLDEPSNHL--DLDAVEALIQGLV--  218 (266)
Q Consensus       148 ~~~~~~~~-~~l~~~~l-~~~~-~~~~~~~LSgGqkqRv~lAral~~~p~--lllLDEPt~~L--D~~~~~~l~~~l~--  218 (266)
                      ....+... ..+..+.. .... ........|.++.++...+.+...+|+  ++++||||+.+  |+.....+++.|+  
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~  153 (235)
T 2w0m_A           74 NWDFEEYIEKKLIIIDALMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRV  153 (235)
T ss_dssp             TCCCGGGBTTTEEEEECCC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHH
T ss_pred             cchHHHHhhCCEEEEeccccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHH
Confidence            00000000 00000000 0000 000113459999998888888888999  99999999888  9877666666654  


Q ss_pred             --hcCCEEEEEecCH--------HHHHhhcCEEEEEeCC
Q 024529          219 --LFQGGILMVSHDE--------HLISGSVEELWVVSEG  247 (266)
Q Consensus       219 --~~~~tiiivtHd~--------~~~~~~~d~i~~l~~G  247 (266)
                        +.+.+||++||+.        ..+..+||++++|+..
T Consensus       154 ~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~  192 (235)
T 2w0m_A          154 LNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM  192 (235)
T ss_dssp             HHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred             HHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence              3467999999999        4588899999999753

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.82  E-value=1.6e-20  Score=185.57  Aligned_cols=103  Identities=26%  Similarity=0.281  Sum_probs=88.9

Q ss_pred             HHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHH---hhcCCEEEEEecCH
Q 024529          157 HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP--HIILLDEPSNHLDLDAVEALIQGL---VLFQGGILMVSHDE  231 (266)
Q Consensus       157 ~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p--~lllLDEPt~~LD~~~~~~l~~~l---~~~~~tiiivtHd~  231 (266)
                      .+..+|+.....++++.+|||||+|||+||++|+.+|  .+|||||||++||+...+++++.+   ++.+.|||+||||+
T Consensus       362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl  441 (842)
T 2vf7_A          362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDL  441 (842)
T ss_dssp             HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred             HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence            5778999744367899999999999999999999999  599999999999999888887755   45578999999999


Q ss_pred             HHHHhhcCEEEEE------eCCeEEecCCChhHHHH
Q 024529          232 HLISGSVEELWVV------SEGKATPFHGTFHDYKK  261 (266)
Q Consensus       232 ~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~~  261 (266)
                      +++. .||+|++|      ++|+++ +.|+++++.+
T Consensus       442 ~~l~-~aD~ii~lgpgaG~~~G~iv-~~g~~~~~~~  475 (842)
T 2vf7_A          442 DVIR-RADWLVDVGPEAGEKGGEIL-YSGPPEGLKH  475 (842)
T ss_dssp             HHHT-TCSEEEEECSSSGGGCCSEE-EEECGGGGGG
T ss_pred             HHHH-hCCEEEEeCCCcccCCCEEE-EecCHHHHHh
Confidence            9876 69999999      688886 7899887743

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=99.80  E-value=5e-23  Score=172.48  Aligned_cols=141  Identities=16%  Similarity=0.089  Sum_probs=103.4

Q ss_pred             EeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCC---CCcHHHHH
Q 024529           79 IDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP---GVPEQKLR  155 (266)
Q Consensus        79 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  155 (266)
                      .++|++++|+||||||||||+++|+|++.|           .++|++|+.........+........+.   ....+.+.
T Consensus         3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~-----------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (211)
T 3asz_A            3 APKPFVIGIAGGTASGKTTLAQALARTLGE-----------RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYL   71 (211)
T ss_dssp             --CCEEEEEEESTTSSHHHHHHHHHHHHGG-----------GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHH
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHhCC-----------CeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHH
Confidence            578999999999999999999999998765           4788888764221111223222211111   12356677


Q ss_pred             HHHHhcCCCcccccCCCCCCChHH----HHHHHHHHHHccCCCEEEEeCCCCC-------CCHHHHHHHHHHHhh----c
Q 024529          156 AHLGSFGVTGNLALQPMYTLSGGQ----KSRVAFAKITFKKPHIILLDEPSNH-------LDLDAVEALIQGLVL----F  220 (266)
Q Consensus       156 ~~l~~~~l~~~~~~~~~~~LSgGq----kqRv~lAral~~~p~lllLDEPt~~-------LD~~~~~~l~~~l~~----~  220 (266)
                      ++++.+++.+. ...++..+|+||    +||+++|++++.+|.++++||||++       ||+.....+.+.+.+    .
T Consensus        72 ~~l~~~~~~~~-~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~  150 (211)
T 3asz_A           72 EHAQALLRGLP-VEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLER  150 (211)
T ss_dssp             HHHHHHHTTCC-EEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHcCCC-cCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHh
Confidence            88888887654 346788999996    4788999999999999999999999       898877777666654    3


Q ss_pred             CCEEEEEecCH
Q 024529          221 QGGILMVSHDE  231 (266)
Q Consensus       221 ~~tiiivtHd~  231 (266)
                      +.|+++++|+.
T Consensus       151 g~t~~~~~~~~  161 (211)
T 3asz_A          151 GRSLEGVVAQY  161 (211)
T ss_dssp             CCCHHHHHHHH
T ss_pred             CCCHHHHHHHH
Confidence            67888899974

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.79  E-value=2.9e-22  Score=177.61  Aligned_cols=154  Identities=16%  Similarity=0.132  Sum_probs=76.2

Q ss_pred             EeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCC-CCCCceEEEEcC--------eeeEEEEecccc
Q 024529           59 SDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE-LQPSSGTVFRSA--------KVRIAVFSQHHV  129 (266)
Q Consensus        59 ~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-~~p~~G~i~~~~--------~~~i~~~~q~~~  129 (266)
                      .||++.| +++.++++++|+|      +|+||||||||||+++|+|. ..|++| +...+        ...+++++|...
T Consensus         2 ~~l~~~~-~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~   73 (301)
T 2qnr_A            2 SNLPNQV-HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEERG   73 (301)
T ss_dssp             -----------------CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC---
T ss_pred             CCCcceE-CCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCCC
Confidence            4789999 4567899999998      99999999999999999998 888888 54322        123566666431


Q ss_pred             CC--CCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCC-CC
Q 024529          130 DG--LDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNH-LD  206 (266)
Q Consensus       130 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~-LD  206 (266)
                      ..  +.+..++-...  ...  ..+....+.+.  +. ...++++.++|||||||+.+|||++    ++++||||++ ||
T Consensus        74 ~~~~ltv~Dt~g~~~--~~~--~~e~~~~l~~~--l~-~~~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld  142 (301)
T 2qnr_A           74 VKLRLTVVDTPGYGD--AIN--CRDCFKTIISY--ID-EQFERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLK  142 (301)
T ss_dssp             CCEEEEEEEEC---------------CTTHHHH--HH-HHHHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCC
T ss_pred             cccCcchhhhhhhhh--hcC--cHHHHHHHHHH--HH-HHHHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCC
Confidence            11  11111111000  000  00011111111  11 1123566789999999999999986    9999999985 99


Q ss_pred             HHHHHHHHHHHhh-cCCEEEEEecCHH
Q 024529          207 LDAVEALIQGLVL-FQGGILMVSHDEH  232 (266)
Q Consensus       207 ~~~~~~l~~~l~~-~~~tiiivtHd~~  232 (266)
                      +... .++..+.. .+.++|+++||+.
T Consensus       143 ~~~~-~~l~~l~~~~~iilV~~K~Dl~  168 (301)
T 2qnr_A          143 PLDV-AFMKAIHNKVNIVPVIAKADTL  168 (301)
T ss_dssp             HHHH-HHHHHHTTTSCEEEEECCGGGS
T ss_pred             HHHH-HHHHHHHhcCCEEEEEEeCCCC
Confidence            9875 45555543 2457899999973

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=99.79  E-value=1.6e-20  Score=185.37  Aligned_cols=161  Identities=19%  Similarity=0.135  Sum_probs=98.6

Q ss_pred             cEEEEeeEEEcC----CCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC-CCceEEEEcCeeeEEEEecccc
Q 024529           55 IISFSDASFGYP----GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-PSSGTVFRSAKVRIAVFSQHHV  129 (266)
Q Consensus        55 ~l~~~~l~~~y~----~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~~~~~i~~~~q~~~  129 (266)
                      .+.+++...-.-    ++..+++|++|+ ++|++++|+||||||||||||+|+|+.. ...|.........+++++|-  
T Consensus       577 ~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~vpa~~~~i~~~~~i--  653 (800)
T 1wb9_A          577 GIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRI--  653 (800)
T ss_dssp             CEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCEE--
T ss_pred             CEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcccchhcccceeHHHH--
Confidence            466666532110    235689999999 9999999999999999999999999742 22232111111122222220  


Q ss_pred             CCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH
Q 024529          130 DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA  209 (266)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~  209 (266)
                                                  +..++..+.. ....+++|+++++ ++.+..++.+|+++||||||+|+|+..
T Consensus       654 ----------------------------~~~~~~~d~l-~~~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d  703 (800)
T 1wb9_A          654 ----------------------------FTRVGAADDL-ASGRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYD  703 (800)
T ss_dssp             ----------------------------EEEEC------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSH
T ss_pred             ----------------------------HhhCCHHHHH-HhhhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhH
Confidence                                        1112221111 1233567777765 444455689999999999988888754


Q ss_pred             H----HHHHHHHhh-cCCEEEEEecCHHHHHhhcCEEEEEeCCeE
Q 024529          210 V----EALIQGLVL-FQGGILMVSHDEHLISGSVEELWVVSEGKA  249 (266)
Q Consensus       210 ~----~~l~~~l~~-~~~tiiivtHd~~~~~~~~d~i~~l~~G~i  249 (266)
                      .    ..+++.+.+ .+.++|++||+.++.. +||++..+.+|++
T Consensus       704 ~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~-l~d~~~~v~n~~~  747 (800)
T 1wb9_A          704 GLSLAWACAENLANKIKALTLFATHYFELTQ-LPEKMEGVANVHL  747 (800)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEECSCGGGGG-HHHHSTTEEEEEE
T ss_pred             HHHHHHHHHHHHHhccCCeEEEEeCCHHHHH-HhhhhhceEEEEE
Confidence            3    345666666 4789999999998765 7876544444443

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.79  E-value=1.9e-20  Score=155.85  Aligned_cols=158  Identities=13%  Similarity=0.103  Sum_probs=95.9

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCC-----CCCceEEEEcCee----eEEEEe
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL-----QPSSGTVFRSAKV----RIAVFS  125 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-----~p~~G~i~~~~~~----~i~~~~  125 (266)
                      +|+++|+++.|+ . .++++  |.+.+|.+++|+|+||||||||++.|+|..     .|+.|.+...+..    .+.++ 
T Consensus         3 ~l~~~~~~~~~~-~-~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~-   77 (210)
T 1pui_A            3 NLNYQQTHFVMS-A-PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV-   77 (210)
T ss_dssp             --------CEEE-E-SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE-
T ss_pred             chhhhhhhheee-c-CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE-
Confidence            588999999994 3 56777  889999999999999999999999999998     7888876532111    01111 


Q ss_pred             ccccCCCC-----CCC-cH----HHHHHHhC-------------CCCc--HHHHHHHHHhcCCCcccccCCCCCCChHHH
Q 024529          126 QHHVDGLD-----LSS-NP----LLYMMRCF-------------PGVP--EQKLRAHLGSFGVTGNLALQPMYTLSGGQK  180 (266)
Q Consensus       126 q~~~~~~~-----~~~-~~----~~~~~~~~-------------~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgGqk  180 (266)
                      ..+  +..     ... ..    ...+....             ....  ..++..++...++.......++..+|+||+
T Consensus        78 Dt~--G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~  155 (210)
T 1pui_A           78 DLP--GYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGAR  155 (210)
T ss_dssp             ECC--CCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHH
T ss_pred             ECc--CCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhH
Confidence            100  110     000 00    11111100             0111  234556667777764333456788999999


Q ss_pred             HH-HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q 024529          181 SR-VAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL  219 (266)
Q Consensus       181 qR-v~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  219 (266)
                      || +..+++++.+|+++++|||||++|..+...+++.+.+
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~  195 (210)
T 1pui_A          156 KAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDT  195 (210)
T ss_dssp             HHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHH
Confidence            99 8999999999999999999999999999998888765

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=99.78  E-value=1.5e-20  Score=170.07  Aligned_cols=144  Identities=18%  Similarity=0.156  Sum_probs=93.6

Q ss_pred             eeEEEcC-CCCcceeeceE-------EEeCCcEEEEECCCCchHHHHHHHHhCCCCCC-ceEEEEcCeeeEEEEeccccC
Q 024529           60 DASFGYP-GGPILFKNLNF-------GIDLDSRIAMVGPNGIGKSTILKLIAGELQPS-SGTVFRSAKVRIAVFSQHHVD  130 (266)
Q Consensus        60 ~l~~~y~-~~~~~l~~vsl-------~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~~~~~i~~~~q~~~~  130 (266)
                      .++++|. .....|+++.+       .+.+|++++|+|||||||||||++|+|+++|+ .|.|...         .++..
T Consensus        93 ~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~---------ed~~e  163 (356)
T 3jvv_A           93 GAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTI---------EDPIE  163 (356)
T ss_dssp             EEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEE---------ESSCC
T ss_pred             EEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEc---------cCcHH
Confidence            4444442 22344566665       67889999999999999999999999999887 5655321         11111


Q ss_pred             CCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH
Q 024529          131 GLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAV  210 (266)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~  210 (266)
                      . .....         ..             .+....  .....++-.+    +||+||..+|++|++||||   |.++.
T Consensus       164 ~-~~~~~---------~~-------------~v~q~~--~~~~~~~~~~----~La~aL~~~PdvillDEp~---d~e~~  211 (356)
T 3jvv_A          164 F-VHESK---------KC-------------LVNQRE--VHRDTLGFSE----ALRSALREDPDIILVGEMR---DLETI  211 (356)
T ss_dssp             S-CCCCS---------SS-------------EEEEEE--BTTTBSCHHH----HHHHHTTSCCSEEEESCCC---SHHHH
T ss_pred             h-hhhcc---------cc-------------ceeeee--eccccCCHHH----HHHHHhhhCcCEEecCCCC---CHHHH
Confidence            0 00000         00             000000  0001223322    9999999999999999999   78876


Q ss_pred             HHHHHHHhhcCCEEEEEecCHHHHHhhcCEEEEEeC
Q 024529          211 EALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSE  246 (266)
Q Consensus       211 ~~l~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~  246 (266)
                      ..+.+.. ..+.+||+++|+.+.+ ..|||++.|..
T Consensus       212 ~~~~~~~-~~G~~vl~t~H~~~~~-~~~dRli~l~~  245 (356)
T 3jvv_A          212 RLALTAA-ETGHLVFGTLHTTSAA-KTIDRVVDVFP  245 (356)
T ss_dssp             HHHHHHH-HTTCEEEEEESCSSHH-HHHHHHHHTSC
T ss_pred             HHHHHHH-hcCCEEEEEEccChHH-HHHHHHhhhcC
Confidence            6666653 4478999999999988 57888876643

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=99.78  E-value=2.3e-18  Score=140.57  Aligned_cols=92  Identities=18%  Similarity=0.276  Sum_probs=75.7

Q ss_pred             cCCCCCCChHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEE
Q 024529          169 LQPMYTLSGGQKSRVAFAKITF----KKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELW  242 (266)
Q Consensus       169 ~~~~~~LSgGqkqRv~lAral~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~  242 (266)
                      .+++..||||||||++||++|+    .+|+++||||||++||+.+...+.+.+++.  +.++|+|||+.... .+||+++
T Consensus        59 ~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~-~~ad~i~  137 (173)
T 3kta_B           59 VKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMM-ANADKII  137 (173)
T ss_dssp             CCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEEE
T ss_pred             ccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHH-HhCCEEE
Confidence            4567899999999999999997    457999999999999999999999988765  35899999998765 5899998


Q ss_pred             EE--eCCeEEecCCChhHHHH
Q 024529          243 VV--SEGKATPFHGTFHDYKK  261 (266)
Q Consensus       243 ~l--~~G~i~~~~g~~~~~~~  261 (266)
                      .+  .+|.......+.+++.+
T Consensus       138 ~v~~~~g~s~~~~~~~~~~~~  158 (173)
T 3kta_B          138 GVSMRDGVSKVVSLSLEKAMK  158 (173)
T ss_dssp             EEEEETTEEEEEECCHHHHHH
T ss_pred             EEEecCCEEEEEEEEcHHHHH
Confidence            55  57876555666666544

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=99.77  E-value=5.1e-19  Score=154.69  Aligned_cols=147  Identities=12%  Similarity=0.082  Sum_probs=94.5

Q ss_pred             EEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcC----eeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHH
Q 024529           78 GIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA----KVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQK  153 (266)
Q Consensus        78 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~----~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (266)
                      .+++|++++|+||||||||||++.|++...  .|.++...    ...+.|+..+..    . ......+...........
T Consensus        26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~~g~~~~~~~~v~~~~~e~~----~-~~~~~r~~~~g~~~~~~~   98 (279)
T 1nlf_A           26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLLEVGELPTGPVIYLPAEDP----P-TAIHHRLHALGAHLSAEE   98 (279)
T ss_dssp             TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTTCCCCCCCCCEEEEESSSC----H-HHHHHHHHHHHTTSCHHH
T ss_pred             CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCcCCCccCCCccEEEEECCCC----H-HHHHHHHHHHHhhcChhh
Confidence            378999999999999999999999998654  34432210    123445443211    0 001111111111234455


Q ss_pred             HHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC--CCCHHH---HHHHHHHHh----hcCCEE
Q 024529          154 LRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN--HLDLDA---VEALIQGLV----LFQGGI  224 (266)
Q Consensus       154 ~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~--~LD~~~---~~~l~~~l~----~~~~ti  224 (266)
                      ...+++.+.+.+ ..++++..||+||++++   ++++.+|+++++||||+  ++|...   ...+++.|.    +.+.||
T Consensus        99 ~~~~~~~l~l~~-~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tv  174 (279)
T 1nlf_A           99 RQAVADGLLIQP-LIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSI  174 (279)
T ss_dssp             HHHHHHHEEECC-CTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEE
T ss_pred             hhhccCceEEee-cCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEE
Confidence            666778887764 45678899999997765   68888999999999999  999732   245544443    457899


Q ss_pred             EEEecCHHHHH
Q 024529          225 LMVSHDEHLIS  235 (266)
Q Consensus       225 iivtHd~~~~~  235 (266)
                      |+++|+.....
T Consensus       175 i~i~H~~~~~~  185 (279)
T 1nlf_A          175 VFLHHASKGAA  185 (279)
T ss_dssp             EEEEEC-----
T ss_pred             EEEecCCCccc
Confidence            99999987653

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=99.74  E-value=7.1e-18  Score=141.21  Aligned_cols=150  Identities=15%  Similarity=0.177  Sum_probs=94.4

Q ss_pred             cceeeceE-EEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCC
Q 024529           70 ILFKNLNF-GIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPG  148 (266)
Q Consensus        70 ~~l~~vsl-~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~  148 (266)
                      ..|+.+.. .+++|++++|+||||||||||++.|++  .+. +.+        .|+..+.    ......+....... .
T Consensus         7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~-~~v--------~~i~~~~----~~~~~~~~~~~~~~-~   70 (220)
T 2cvh_A            7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSG-KKV--------AYVDTEG----GFSPERLVQMAETR-G   70 (220)
T ss_dssp             HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHC-SEE--------EEEESSC----CCCHHHHHHHHHTT-T
T ss_pred             HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcC-CcE--------EEEECCC----CCCHHHHHHHHHhc-C
Confidence            34666655 689999999999999999999999999  222 222        2332211    01111111111111 1


Q ss_pred             CcHHHHHHHHHhcCCCcccccCCCCCCChHH--HHHHHHHHHHccC-CCEEEEeCCCCCCCHH--------HHHHHHHHH
Q 024529          149 VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQ--KSRVAFAKITFKK-PHIILLDEPSNHLDLD--------AVEALIQGL  217 (266)
Q Consensus       149 ~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq--kqRv~lAral~~~-p~lllLDEPt~~LD~~--------~~~~l~~~l  217 (266)
                      ...+.   +++.+         .+..+|+++  +++++.+++++.+ |+++++||||+.+|+.        ....+++.|
T Consensus        71 ~~~~~---~~~~~---------~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L  138 (220)
T 2cvh_A           71 LNPEE---ALSRF---------ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVL  138 (220)
T ss_dssp             CCHHH---HHHHE---------EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHH
T ss_pred             CChHH---HhhcE---------EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHH
Confidence            11111   22211         223455554  5688888999986 9999999999999973        223333333


Q ss_pred             ----hhcCCEEEEEecCHH-------------HHHhhcCEEEEEeCC
Q 024529          218 ----VLFQGGILMVSHDEH-------------LISGSVEELWVVSEG  247 (266)
Q Consensus       218 ----~~~~~tiiivtHd~~-------------~~~~~~d~i~~l~~G  247 (266)
                          ++.+.+||+++|...             .+..+||.+++|+..
T Consensus       139 ~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~  185 (220)
T 2cvh_A          139 LWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL  185 (220)
T ss_dssp             HHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred             HHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence                345789999999865             577899999999753

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.72  E-value=1.5e-19  Score=166.68  Aligned_cols=156  Identities=12%  Similarity=0.075  Sum_probs=88.4

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCce--EEEEc-----CeeeEEEEec
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG--TVFRS-----AKVRIAVFSQ  126 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G--~i~~~-----~~~~i~~~~q  126 (266)
                      .+|.++||++.|+ +..+++++||+|      +|+|+||||||||+++|+|...|..|  .+...     ....+++++|
T Consensus        10 ~~l~~~~l~~~y~-~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q   82 (418)
T 2qag_C           10 GYVGFANLPNQVY-RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIK   82 (418)
T ss_dssp             -----CCCCCCTT-TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC--
T ss_pred             CcEEEEecceeEC-CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEe
Confidence            4699999999994 567899999998      99999999999999999999875444  11111     1123566666


Q ss_pred             cccCC--CCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCC---EEEEeCC
Q 024529          127 HHVDG--LDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH---IILLDEP  201 (266)
Q Consensus       127 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~---lllLDEP  201 (266)
                      .....  +.+..++..... .........+.+.++             ..++.+++||++|||+++.+|+   +|++|||
T Consensus        83 ~~~~~~~Ltv~Dt~g~~~~-~~~~~~~~~i~~~i~-------------~~~~~~l~qr~~IaRal~~d~~~~vlL~ldeP  148 (418)
T 2qag_C           83 EGGVQLLLTIVDTPGFGDA-VDNSNCWQPVIDYID-------------SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAP  148 (418)
T ss_dssp             ----CEEEEEEECC------------CHHHHHHHH-------------HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC
T ss_pred             cCCcccceeeeechhhhhh-ccchhhHHHHHHHHH-------------HHHHHHHHHHHHHHHHhccCCCeeEEEEEecC
Confidence            43211  111111111000 000000011111111             1355677789999999999999   9999999


Q ss_pred             C-CCCCHHHHHHHHHHHhhcCCEEEEEecCHH
Q 024529          202 S-NHLDLDAVEALIQGLVLFQGGILMVSHDEH  232 (266)
Q Consensus       202 t-~~LD~~~~~~l~~~l~~~~~tiiivtHd~~  232 (266)
                      | ++||+... .+++.+.. +..||+|.|..+
T Consensus       149 t~~~L~~~d~-~~lk~L~~-~v~iIlVinK~D  178 (418)
T 2qag_C          149 SGHGLKPLDI-EFMKRLHE-KVNIIPLIAKAD  178 (418)
T ss_dssp             -CCSCCHHHH-HHHHHHTT-TSEEEEEEESTT
T ss_pred             cccCCCHHHH-HHHHHHhc-cCcEEEEEEccc
Confidence            9 69999874 44555654 567777777544

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=99.72  E-value=1.9e-20  Score=180.54  Aligned_cols=170  Identities=14%  Similarity=0.197  Sum_probs=90.1

Q ss_pred             CcEEEEeeEEEcCCC-Ccceeec----------eEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC-CceEEEEcCe---
Q 024529           54 PIISFSDASFGYPGG-PILFKNL----------NFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-SSGTVFRSAK---  118 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~-~~~l~~v----------sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~~~---  118 (266)
                      +.+.++|+++.|++. +++++.+          +|+++.   ++|+|||||||||||++|+|+..| ++|.|.+.+.   
T Consensus         9 ~~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~   85 (608)
T 3szr_A            9 GSVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK   85 (608)
T ss_dssp             -----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred             chhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence            358899999999532 2344444          366654   999999999999999999999988 7999976653   


Q ss_pred             -----------eeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHH
Q 024529          119 -----------VRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAK  187 (266)
Q Consensus       119 -----------~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAr  187 (266)
                                 ..++|++|+..  +....+..            +.+......++...       ..+|   ++++.++.
T Consensus        86 ~~~~~~~~~~~~~i~~v~Q~~~--l~~~~tv~------------e~i~~~~~~~~~~~-------~~~s---~~~i~l~i  141 (608)
T 3szr_A           86 LKKLVNEDKWRGKVSYQDYEIE--ISDASEVE------------KEINKAQNAIAGEG-------MGIS---HELITLEI  141 (608)
T ss_dssp             EEECSSSSCCEEEESCC---CC--CCCHHHHH------------TTHHHHHHHHHCSS-------SCCC---SCCEEEEE
T ss_pred             EecCCccccceeEEeeeccccc--CCCHHHHH------------HHHHHHHHHhcCCc-------cccc---hHHHHHHh
Confidence                       23566666532  11000110            01111111111110       0111   12233334


Q ss_pred             HHccCCCEEEEeCC------CCCCCHHHHHHHHHHHhhc-----CCEEEEEecCHHHH--------Hhh----cCEEEEE
Q 024529          188 ITFKKPHIILLDEP------SNHLDLDAVEALIQGLVLF-----QGGILMVSHDEHLI--------SGS----VEELWVV  244 (266)
Q Consensus       188 al~~~p~lllLDEP------t~~LD~~~~~~l~~~l~~~-----~~tiiivtHd~~~~--------~~~----~d~i~~l  244 (266)
                      +....|+++|+|||      |++||+.....+.+.+.++     ..+++++|||.+.+        ..+    +..|+++
T Consensus       142 ~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~Vl  221 (608)
T 3szr_A          142 SSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGIL  221 (608)
T ss_dssp             EESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEE
T ss_pred             cCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEe
Confidence            44568999999999      9999999888888777664     24689999997633        222    3457888


Q ss_pred             eCCeEE
Q 024529          245 SEGKAT  250 (266)
Q Consensus       245 ~~G~i~  250 (266)
                      .++.++
T Consensus       222 TK~Dlv  227 (608)
T 3szr_A          222 TKPDLV  227 (608)
T ss_dssp             ECGGGS
T ss_pred             cchhhc
Confidence            877654

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=99.72  E-value=8.4e-18  Score=159.27  Aligned_cols=77  Identities=23%  Similarity=0.311  Sum_probs=68.8

Q ss_pred             CCCCCC-ChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEE
Q 024529          170 QPMYTL-SGGQKSRVAFAKITFKKP--HIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVV  244 (266)
Q Consensus       170 ~~~~~L-SgGqkqRv~lAral~~~p--~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l  244 (266)
                      +++..| ||||+|||+||++|+.+|  ++|||||||+|||+.+...+.+.|.+.  +.+||+||||++++. .||++++|
T Consensus       392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~-~~d~~~~~  470 (517)
T 4ad8_A          392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHHYKV  470 (517)
T ss_dssp             CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHH-HSSEEEEE
T ss_pred             ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEE
Confidence            456778 999999999999999999  999999999999999999888877654  679999999999886 69999999


Q ss_pred             eCC
Q 024529          245 SEG  247 (266)
Q Consensus       245 ~~G  247 (266)
                      .++
T Consensus       471 ~~~  473 (517)
T 4ad8_A          471 EKQ  473 (517)
T ss_dssp             ECC
T ss_pred             ecc
Confidence            554

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=99.70  E-value=5.7e-19  Score=156.59  Aligned_cols=155  Identities=16%  Similarity=0.076  Sum_probs=91.5

Q ss_pred             CCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------------eeEEEEeccccCCCCCCCcHHHHHH
Q 024529           81 LDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------------VRIAVFSQHHVDGLDLSSNPLLYMM  143 (266)
Q Consensus        81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------------~~i~~~~q~~~~~~~~~~~~~~~~~  143 (266)
                      +|++++|+||||||||||+++|+|+++|++|+|.+.+.                 ..++|++|.+.  .....+....+.
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~--~~p~~~v~~~v~  178 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEG--TDSAALAYDAVQ  178 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTT--CCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCC--CCHHHHHHHHHH
Confidence            68999999999999999999999999999999987542                 12556666431  110001111111


Q ss_pred             HhC-CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHhhc
Q 024529          144 RCF-PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH--IILLDEPSNHLDLDAVEALIQGLVLF  220 (266)
Q Consensus       144 ~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~--lllLDEPt~~LD~~~~~~l~~~l~~~  220 (266)
                      ... ...+    ..+++..|...    .....++..++||++||||++.+|+  +|.|| |+++.+...  .+...-...
T Consensus       179 ~~~~~~~d----~~llDt~G~~~----~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~~~~--~~~~~~~~~  247 (304)
T 1rj9_A          179 AMKARGYD----LLFVDTAGRLH----TKHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQNGLE--QAKKFHEAV  247 (304)
T ss_dssp             HHHHHTCS----EEEECCCCCCT----TCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHHHH--HHHHHHHHH
T ss_pred             HHHhCCCC----EEEecCCCCCC----chHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHHHH--HHHHHHHHc
Confidence            000 0000    00112222211    1112345566999999999999999  66777 666655332  222222344


Q ss_pred             CCEEEEEecCHHHHH---------hhcCEEEEEeCCe
Q 024529          221 QGGILMVSHDEHLIS---------GSVEELWVVSEGK  248 (266)
Q Consensus       221 ~~tiiivtHd~~~~~---------~~~d~i~~l~~G~  248 (266)
                      +.|+|++||+.....         ...-.|..+..|+
T Consensus       248 ~~t~iivTh~d~~a~gg~~l~i~~~~~~pi~~ig~Ge  284 (304)
T 1rj9_A          248 GLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGE  284 (304)
T ss_dssp             CCSEEEEECTTSSCCCTTHHHHHHHHCCCEEEEECSS
T ss_pred             CCcEEEEECCcccccccHHHHHHHHHCCCeEEEeCCC
Confidence            789999999854221         1123566666665

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=99.70  E-value=1.7e-17  Score=149.91  Aligned_cols=154  Identities=14%  Similarity=0.202  Sum_probs=91.3

Q ss_pred             ceeec-eEEEeCCcEEEEECCCCchHHHHHHHHhCCC--CCCc----eE-EEEcCeeeEEEEeccccCCCCCCCcHHHHH
Q 024529           71 LFKNL-NFGIDLDSRIAMVGPNGIGKSTILKLIAGEL--QPSS----GT-VFRSAKVRIAVFSQHHVDGLDLSSNPLLYM  142 (266)
Q Consensus        71 ~l~~v-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--~p~~----G~-i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~  142 (266)
                      .|+.+ ++.|++|++++|+||||||||||++.|++..  +|++    |. |++++.         ..    +....+..+
T Consensus       119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e---------~~----~~~~~i~~i  185 (349)
T 1pzn_A          119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE---------NT----FRPERIREI  185 (349)
T ss_dssp             HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESS---------SC----CCHHHHHHH
T ss_pred             HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCC---------CC----CCHHHHHHH
Confidence            45665 6899999999999999999999999999988  6776    45 443321         10    010111112


Q ss_pred             HHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHc-------cCCCEEEEeCCCCCCCHHH------
Q 024529          143 MRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF-------KKPHIILLDEPSNHLDLDA------  209 (266)
Q Consensus       143 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~-------~~p~lllLDEPt~~LD~~~------  209 (266)
                      .... .....   .+++.+-+.     ..  .-|.+++|++.++++++       .+|++||+||||+++|+..      
T Consensus       186 ~q~~-~~~~~---~v~~ni~~~-----~~--~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~  254 (349)
T 1pzn_A          186 AQNR-GLDPD---EVLKHIYVA-----RA--FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGAL  254 (349)
T ss_dssp             HHTT-TCCHH---HHGGGEEEE-----EC--CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTH
T ss_pred             HHHc-CCCHH---HHhhCEEEE-----ec--CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccH
Confidence            2211 22222   223222111     11  12678999999999998       6899999999999999852      


Q ss_pred             ------HHHHHHHHh----hcCCEEEEEecCHHHHHhhcCEEEEEeCCe
Q 024529          210 ------VEALIQGLV----LFQGGILMVSHDEHLISGSVEELWVVSEGK  248 (266)
Q Consensus       210 ------~~~l~~~l~----~~~~tiiivtHd~~~~~~~~d~i~~l~~G~  248 (266)
                            ...++..|.    +.+.|||+++|........++.......|+
T Consensus       255 ~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~  303 (349)
T 1pzn_A          255 AERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGH  303 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CC
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcc
Confidence                  234444443    357899999998875543333333334444

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=99.70  E-value=1.6e-18  Score=157.90  Aligned_cols=126  Identities=17%  Similarity=0.204  Sum_probs=85.5

Q ss_pred             ceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCC-ceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCC
Q 024529           71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS-SGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGV  149 (266)
Q Consensus        71 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~  149 (266)
                      +|++++  +++|++++|+||||||||||+++|+|+++|+ +|.|...+.         +.. +.....        ..-.
T Consensus       127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~---------~~e-~~~~~~--------~~~v  186 (372)
T 2ewv_A          127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED---------PIE-YVFKHK--------KSIV  186 (372)
T ss_dssp             SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEES---------SCC-SCCCCS--------SSEE
T ss_pred             HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecc---------cHh-hhhccC--------ceEE
Confidence            566665  7899999999999999999999999999997 898854221         110 000000        0000


Q ss_pred             cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEec
Q 024529          150 PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSH  229 (266)
Q Consensus       150 ~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtH  229 (266)
                      .+       ..+++.       +..|      +.+|+++|..+|+++++|||+   |+++...+++.. ..+.+|+.++|
T Consensus       187 ~Q-------~~~g~~-------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~~~l~~~-~~g~~vi~t~H  242 (372)
T 2ewv_A          187 NQ-------REVGED-------TKSF------ADALRAALREDPDVIFVGEMR---DLETVETALRAA-ETGHLVFGTLH  242 (372)
T ss_dssp             EE-------EEBTTT-------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHHHHHHHHHH-TTTCEEEECCC
T ss_pred             Ee-------eecCCC-------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHHHHHHHHHH-hcCCEEEEEEC
Confidence            00       012221       2344      469999999999999999999   888766655554 34678999999


Q ss_pred             CHHHHHhhcCEE
Q 024529          230 DEHLISGSVEEL  241 (266)
Q Consensus       230 d~~~~~~~~d~i  241 (266)
                      +.+ +...|||+
T Consensus       243 ~~~-~~~~~~rl  253 (372)
T 2ewv_A          243 TNT-AIDTIHRI  253 (372)
T ss_dssp             CCS-HHHHHHHH
T ss_pred             cch-HHHHHHHH
Confidence            866 44456654

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=99.68  E-value=9.8e-19  Score=148.12  Aligned_cols=144  Identities=11%  Similarity=0.173  Sum_probs=86.1

Q ss_pred             eEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC--CceEEEEcCee-------eEEEEeccccCCCCCCCcHHHHHHHhC
Q 024529           76 NFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP--SSGTVFRSAKV-------RIAVFSQHHVDGLDLSSNPLLYMMRCF  146 (266)
Q Consensus        76 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~~~~-------~i~~~~q~~~~~~~~~~~~~~~~~~~~  146 (266)
                      .-..++|++++|+||||||||||+++|+|+++|  ..|.|.+.++.       .++|++|+                   
T Consensus        10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~-------------------   70 (219)
T 1s96_A           10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVN-------------------   70 (219)
T ss_dssp             -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECC-------------------
T ss_pred             cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECC-------------------
Confidence            446789999999999999999999999999986  67777654321       12222221                   


Q ss_pred             CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEE
Q 024529          147 PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILM  226 (266)
Q Consensus       147 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiii  226 (266)
                          ..........-.+.+...  ....+.|-.+++   +..++..++++|||     ||+.+...+.+.+. .+.+|++
T Consensus        71 ----~~~f~~~~~~~~f~E~~~--~~~~~yg~~~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~-~~~tI~i  135 (219)
T 1s96_A           71 ----HDEFKEMISRDAFLEHAE--VFGNYYGTSREA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP-HARSIFI  135 (219)
T ss_dssp             ----HHHHHHHHHTTCEEEEEE--ETTEEEEEEHHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT-TCEEEEE
T ss_pred             ----HHHHHHHHhcCHHHHHHH--HHhccCCCCHHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc-CCEEEEE
Confidence                111111111000011110  001111111222   34556678999999     99999999999887 3668999


Q ss_pred             EecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHHHH
Q 024529          227 VSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKML  263 (266)
Q Consensus       227 vtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~  263 (266)
                      +||+++.+..   |+  +.+|     .++.+++.+.+
T Consensus       136 ~th~~~~l~~---Rl--~~rG-----~~~~e~i~~rl  162 (219)
T 1s96_A          136 LPPSKIELDR---RL--RGRG-----QDSEEVIAKRM  162 (219)
T ss_dssp             ECSSHHHHHH---HH--HTTS-----CSCHHHHHHHH
T ss_pred             ECCCHHHHHH---HH--HHcC-----CCCHHHHHHHH
Confidence            9999998875   32  4555     35666665443

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=99.68  E-value=1.8e-18  Score=156.95  Aligned_cols=154  Identities=18%  Similarity=0.151  Sum_probs=100.8

Q ss_pred             EEEeeEEE---cCC-CCcce---------eeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEE
Q 024529           57 SFSDASFG---YPG-GPILF---------KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAV  123 (266)
Q Consensus        57 ~~~~l~~~---y~~-~~~~l---------~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~  123 (266)
                      ++++++|+   |++ ...+|         +++||.+++|++++|+||||||||||+++|+|+++|++|.|.+++...   
T Consensus       137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e---  213 (361)
T 2gza_A          137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPE---  213 (361)
T ss_dssp             TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSC---
T ss_pred             CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccc---
Confidence            66777877   742 12344         999999999999999999999999999999999999999998754210   


Q ss_pred             EeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 024529          124 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN  203 (266)
Q Consensus       124 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~  203 (266)
                              +.....         ..           .+++-  ........++++..++-.|+.++..+|+.+++|||..
T Consensus       214 --------~~~~~~---------~~-----------~v~~v--~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~  263 (361)
T 2gza_A          214 --------LFLPDH---------PN-----------HVHLF--YPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRG  263 (361)
T ss_dssp             --------CCCTTC---------SS-----------EEEEE--CC----------CCHHHHHHHHTTSCCSEEEESCCCS
T ss_pred             --------cCcccc---------CC-----------EEEEe--ecCccccccccccCHHHHHHHHHhcCCCEEEEcCchH
Confidence                    000000         00           00000  0000000124555688899999999999999999985


Q ss_pred             CCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcCEEEEEeCCe
Q 024529          204 HLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGK  248 (266)
Q Consensus       204 ~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~G~  248 (266)
                      .    ....+++.+..-..+++.++|+.+ +...++|+..+..+.
T Consensus       264 ~----~~~~~l~~l~~g~~~~l~t~H~~~-~~~~~~Rl~~l~~~~  303 (361)
T 2gza_A          264 G----EAYDFINVAASGHGGSITSCHAGS-CELTFERLALMVLQN  303 (361)
T ss_dssp             T----HHHHHHHHHHTTCCSCEEEEECSS-HHHHHHHHHHHHTTS
T ss_pred             H----HHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHHHHhcc
Confidence            2    223344444432347889999965 566788887776654

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=99.65  E-value=1.4e-15  Score=129.00  Aligned_cols=145  Identities=14%  Similarity=0.266  Sum_probs=80.5

Q ss_pred             EEeCCcEEEEECCCCchHHHHHHHHhC--CCCC-----CceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCc
Q 024529           78 GIDLDSRIAMVGPNGIGKSTILKLIAG--ELQP-----SSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVP  150 (266)
Q Consensus        78 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G--l~~p-----~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~  150 (266)
                      -|++|++++|+||||||||||++.|++  +.+|     ..|.+++++.         .    ......+....... ...
T Consensus        20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~---------~----~~~~~~~~~~~~~~-g~~   85 (243)
T 1n0w_A           20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTE---------G----TFRPERLLAVAERY-GLS   85 (243)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS---------S----CCCHHHHHHHHHHT-TCC
T ss_pred             CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECC---------C----CcCHHHHHHHHHHc-CCC
Confidence            488999999999999999999999999  5655     3455543221         0    00101111111111 122


Q ss_pred             HHHHHHHHHhcCCCcccccCCCCCCChHHHHH-HHHHHHHc--cCCCEEEEeCCCCCCCHH-------H-----HHHHHH
Q 024529          151 EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSR-VAFAKITF--KKPHIILLDEPSNHLDLD-------A-----VEALIQ  215 (266)
Q Consensus       151 ~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqR-v~lAral~--~~p~lllLDEPt~~LD~~-------~-----~~~l~~  215 (266)
                      .+.   +++.+.+        ....+..+... +.-+..++  .+|+++++|||++.+|+.       +     ...++.
T Consensus        86 ~~~---~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~  154 (243)
T 1n0w_A           86 GSD---VLDNVAY--------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLR  154 (243)
T ss_dssp             HHH---HHHTEEE--------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHH
T ss_pred             HHH---HhhCeEE--------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHH
Confidence            221   2222111        12355555433 22233333  589999999999999975       2     233433


Q ss_pred             HHh----hcCCEEEEEecCHHHHHh-------------------hcCEEEEEeCC
Q 024529          216 GLV----LFQGGILMVSHDEHLISG-------------------SVEELWVVSEG  247 (266)
Q Consensus       216 ~l~----~~~~tiiivtHd~~~~~~-------------------~~d~i~~l~~G  247 (266)
                      .|.    +.+.|||+++|.......                   +||.+++|+.+
T Consensus       155 ~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~  209 (243)
T 1n0w_A          155 MLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG  209 (243)
T ss_dssp             HHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred             HHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence            333    357899999997665433                   79999999864

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=99.64  E-value=8.7e-16  Score=139.64  Aligned_cols=75  Identities=23%  Similarity=0.340  Sum_probs=66.7

Q ss_pred             CCCCCCChHHHHHH------HHHHHHccC-CCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CEEEEEecCHHHHHhhcCE
Q 024529          170 QPMYTLSGGQKSRV------AFAKITFKK-PHIILLDEPSNHLDLDAVEALIQGLVLFQ--GGILMVSHDEHLISGSVEE  240 (266)
Q Consensus       170 ~~~~~LSgGqkqRv------~lAral~~~-p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~tiiivtHd~~~~~~~~d~  240 (266)
                      +++..|||||+||+      ++|++|+.+ |++|||||||++||+..+..+.+.+.+..  .+||+|||+.+ +..+||+
T Consensus       276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~-~~~~~d~  354 (371)
T 3auy_A          276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE-LEDVADV  354 (371)
T ss_dssp             ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG-GGGGCSE
T ss_pred             cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH-HHhhCCE
Confidence            46679999999988      567899999 99999999999999999999999998753  48999999987 4678999


Q ss_pred             EEEEe
Q 024529          241 LWVVS  245 (266)
Q Consensus       241 i~~l~  245 (266)
                      +++|+
T Consensus       355 ~~~l~  359 (371)
T 3auy_A          355 IINVK  359 (371)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99997

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=99.61  E-value=1.7e-18  Score=157.10  Aligned_cols=164  Identities=12%  Similarity=0.075  Sum_probs=95.7

Q ss_pred             eeeceEEEeC--CcEEEEECCCCchHHHHHHHHhCCCCCCc----eEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHh
Q 024529           72 FKNLNFGIDL--DSRIAMVGPNGIGKSTILKLIAGELQPSS----GTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRC  145 (266)
Q Consensus        72 l~~vsl~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~----G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~  145 (266)
                      .+.|+++|.+  |++++|+||||||||||+++|+|+++|++    |++++.+..     ..... .....  .+..+...
T Consensus       158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~-----~~~~~-~~~~~--~~~~I~~~  229 (365)
T 1lw7_A          158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKL-----GGDEQ-AMQYS--DYPQMALG  229 (365)
T ss_dssp             GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSS-----SSCTT-SSCTT--THHHHHHH
T ss_pred             hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhc-----CCCcc-cCChh--HHHHHHHH
Confidence            5679999999  99999999999999999999999999998    766432100     00000 01111  11111111


Q ss_pred             CCCCcHHHHHHHHHhcCC-CcccccCCCCCCChHHHHHHHHHHHHc-cCCCEEEEeC---CC------CCCCHHHHHHHH
Q 024529          146 FPGVPEQKLRAHLGSFGV-TGNLALQPMYTLSGGQKSRVAFAKITF-KKPHIILLDE---PS------NHLDLDAVEALI  214 (266)
Q Consensus       146 ~~~~~~~~~~~~l~~~~l-~~~~~~~~~~~LSgGqkqRv~lAral~-~~p~lllLDE---Pt------~~LD~~~~~~l~  214 (266)
                      ... .........+.+.+ .....+..+..+|+|++|+..+++++. .+|++++|||   |+      .++|+..+..+.
T Consensus       230 ~q~-~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~  308 (365)
T 1lw7_A          230 HQR-YIDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQ  308 (365)
T ss_dssp             HHH-HHHHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHH
T ss_pred             HHH-HHHHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHH
Confidence            000 00000011111111 001111223456778888888888774 6999999999   65      588988888877


Q ss_pred             HHHh----hcCCEEEEEecCHHHHHhhcCEEEEEe
Q 024529          215 QGLV----LFQGGILMVSHDEHLISGSVEELWVVS  245 (266)
Q Consensus       215 ~~l~----~~~~tiiivtHd~~~~~~~~d~i~~l~  245 (266)
                      +.+.    +.+.+||+++|. ....++++++.+++
T Consensus       309 ~~l~~l~~~~~~~ililde~-~~~~r~~~~i~~i~  342 (365)
T 1lw7_A          309 QLLKKLLDKYKVPYIEIESP-SYLDRYNQVKAVIE  342 (365)
T ss_dssp             HHHHHHHHGGGCCCEEEECS-SHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHH
Confidence            7763    336789999986 34556666665553

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=99.59  E-value=1.1e-18  Score=143.40  Aligned_cols=136  Identities=14%  Similarity=0.036  Sum_probs=78.9

Q ss_pred             EEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeee---------EEEEeccccCCCCCCCcHHHHHHHhC--
Q 024529           78 GIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR---------IAVFSQHHVDGLDLSSNPLLYMMRCF--  146 (266)
Q Consensus        78 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~---------i~~~~q~~~~~~~~~~~~~~~~~~~~--  146 (266)
                      .+++|++++|+||||||||||+++|+|.  |..|.|.+++...         ++|++|....    ..+....+....  
T Consensus         5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~~----~~~v~~~l~~~~~~   78 (191)
T 1zp6_A            5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQ----NRMIMQIAADVAGR   78 (191)
T ss_dssp             -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHHH----HHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhhh----hHHHHHHHHHHHHH
Confidence            4779999999999999999999999997  7889888765321         1222221100    000111110000  


Q ss_pred             ---CCCcHHHHHHHHHhcCCCcccc--cCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC
Q 024529          147 ---PGVPEQKLRAHLGSFGVTGNLA--LQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQ  221 (266)
Q Consensus       147 ---~~~~~~~~~~~l~~~~l~~~~~--~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~  221 (266)
                         .+.. ..+..++..+++. ...  +.++..+|+|++|+++++|++..+|+++        +|+.....+.+.+....
T Consensus        79 ~~~~~~~-~~~~~~~~~~~l~-~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~  148 (191)
T 1zp6_A           79 YAKEGYF-VILDGVVRPDWLP-AFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLG  148 (191)
T ss_dssp             HHHTSCE-EEECSCCCTTTTH-HHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCG
T ss_pred             HhccCCe-EEEeccCcHHHHH-HHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccC
Confidence               0000 0000000011111 111  3355689999999999999999999876        68888888777775432


Q ss_pred             --CEEEEEec
Q 024529          222 --GGILMVSH  229 (266)
Q Consensus       222 --~tiiivtH  229 (266)
                        ..+++.|+
T Consensus       149 ~~~~~~i~t~  158 (191)
T 1zp6_A          149 AFEHHVLPVS  158 (191)
T ss_dssp             GGGGGEEECT
T ss_pred             cccccEEECC
Confidence              23445554

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=99.59  E-value=2.8e-15  Score=138.79  Aligned_cols=74  Identities=23%  Similarity=0.284  Sum_probs=65.5

Q ss_pred             CCCCCChHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEE
Q 024529          171 PMYTLSGGQKSRVAFAKITF----KKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWV  243 (266)
Q Consensus       171 ~~~~LSgGqkqRv~lAral~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~  243 (266)
                      ++..||||||||++||++|+    .+|+++||||||++||+..+..+.+.+.+.   +.++|+|||+..++. .||+++.
T Consensus       330 ~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~-~~d~~~~  408 (430)
T 1w1w_A          330 DMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFE-KSDALVG  408 (430)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHT-TCSEEEE
T ss_pred             ccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHH-hCCEEEE
Confidence            34569999999999999999    589999999999999999999999998775   358999999987654 7999998


Q ss_pred             Ee
Q 024529          244 VS  245 (266)
Q Consensus       244 l~  245 (266)
                      |.
T Consensus       409 ~~  410 (430)
T 1w1w_A          409 VY  410 (430)
T ss_dssp             EE
T ss_pred             EE
Confidence            85

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=99.54  E-value=3.8e-17  Score=140.10  Aligned_cols=131  Identities=26%  Similarity=0.273  Sum_probs=80.9

Q ss_pred             CCcEEEEECCCCchHHHHHHHHh---CCCCCCceEEEEcCe---e----eEEEEeccccCCCCCCCcHHHHHHHh-----
Q 024529           81 LDSRIAMVGPNGIGKSTILKLIA---GELQPSSGTVFRSAK---V----RIAVFSQHHVDGLDLSSNPLLYMMRC-----  145 (266)
Q Consensus        81 ~Ge~~~l~G~nGsGKSTLl~~l~---Gl~~p~~G~i~~~~~---~----~i~~~~q~~~~~~~~~~~~~~~~~~~-----  145 (266)
                      ++++++|+||||||||||+++|+   |+..|+.|+|.+.+.   .    .+.+++|+..  +....+....+...     
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~v~~~l~~~l~~~~  103 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSL--LVPDHVITRLMMSELENRR  103 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTC--CCCHHHHHHHHHHHHHTCT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhcC
Confidence            47999999999999999999999   999999998865431   0    1122233221  11111111111110     


Q ss_pred             -----CCC--CcHHHHHHHHH--hcCC-----------CcccccCCCCCCChHHHHHHHHHHHH-ccCCCEEEEe----C
Q 024529          146 -----FPG--VPEQKLRAHLG--SFGV-----------TGNLALQPMYTLSGGQKSRVAFAKIT-FKKPHIILLD----E  200 (266)
Q Consensus       146 -----~~~--~~~~~~~~~l~--~~~l-----------~~~~~~~~~~~LSgGqkqRv~lAral-~~~p~lllLD----E  200 (266)
                           ..+  ....++..+..  .+++           .....++++..|||    |+   +++ +.+|++++||    |
T Consensus       104 ~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~E  176 (246)
T 2bbw_A          104 GQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGE  176 (246)
T ss_dssp             TSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTTCC
T ss_pred             CCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccccccc
Confidence                 001  12222333322  2220           01233566788999    65   677 9999999999    9


Q ss_pred             CCCCCCHHHHHHHHHHHhhc
Q 024529          201 PSNHLDLDAVEALIQGLVLF  220 (266)
Q Consensus       201 Pt~~LD~~~~~~l~~~l~~~  220 (266)
                      ||++||+.+...+.+.+..+
T Consensus       177 P~~~ld~~~~~~i~~~l~~~  196 (246)
T 2bbw_A          177 PLVQQEDDKPEAVAARLRQY  196 (246)
T ss_dssp             BCBCCGGGSHHHHHHHHHHH
T ss_pred             ccccCCCCcHHHHHHHHHHH
Confidence            99999998887777766554

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.54  E-value=5.3e-16  Score=142.82  Aligned_cols=169  Identities=14%  Similarity=0.065  Sum_probs=95.3

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcE--EEEECCCCchHHHHHHHHhCCCCCCceEEEE---cC--eeeEEEEecc
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSR--IAMVGPNGIGKSTILKLIAGELQPSSGTVFR---SA--KVRIAVFSQH  127 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~---~~--~~~i~~~~q~  127 (266)
                      .+++++ ++.|+ +.+ |+++||++++|++  ++|+||||||||||+++|+|+.-  .|.-..   .+  ...++|++|+
T Consensus        16 ~l~~~~-~~~y~-~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l--~g~~~~~~~~~~~~~~i~~v~Q~   90 (427)
T 2qag_B           16 TVPLAG-HVGFD-SLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF--EGEPATHTQPGVQLQSNTYDLQE   90 (427)
T ss_dssp             -CCCCC-CC-CC---C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC---------CCSSCEEEEEEEEEEC
T ss_pred             eEEEee-EEEEC-Cee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc--cCCcCCCCCccceEeeEEEEeec
Confidence            366677 88895 445 9999999999999  99999999999999999999841  121111   01  2357888886


Q ss_pred             ccC--CCCCCCcHHH--H--HHHhCC---CCcHHHHHHHHHhc-CCCcc---cccCC-----------CCCCChHHHHHH
Q 024529          128 HVD--GLDLSSNPLL--Y--MMRCFP---GVPEQKLRAHLGSF-GVTGN---LALQP-----------MYTLSGGQKSRV  183 (266)
Q Consensus       128 ~~~--~~~~~~~~~~--~--~~~~~~---~~~~~~~~~~l~~~-~l~~~---~~~~~-----------~~~LSgGqkqRv  183 (266)
                      ...  .+++..++..  .  ....+.   ..-...+.+++... ++...   ..+.+           ...|+-..   +
T Consensus        91 ~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---i  167 (427)
T 2qag_B           91 SNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---L  167 (427)
T ss_dssp             --CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---H
T ss_pred             CccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---H
Confidence            421  1111111000  0  000000   00122344445443 33211   01111           12466555   7


Q ss_pred             HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHh----hcCCEEEEEecCH
Q 024529          184 AFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV----LFQGGILMVSHDE  231 (266)
Q Consensus       184 ~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~----~~~~tiiivtHd~  231 (266)
                      .++++|..+++|+++|||+..|.+.....+.+.+.    ..+.+|+.+|.|-
T Consensus       168 eilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~d  219 (427)
T 2qag_B          168 VTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTDD  219 (427)
T ss_dssp             HHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC---
T ss_pred             HHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCCc
Confidence            99999999999999999999999887766655554    3456788888653

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=99.54  E-value=7e-20  Score=150.79  Aligned_cols=158  Identities=13%  Similarity=0.081  Sum_probs=89.9

Q ss_pred             CcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee-----eEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHH
Q 024529           82 DSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-----RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRA  156 (266)
Q Consensus        82 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-----~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (266)
                      |++++|+||||||||||+++|++   |.+|.+++++..     ..++++|...  .....+....+        ...+..
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~l--------~~~~~~   68 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHMVVGGYRPPWES--DELLALTWKNI--------TDLTVN   68 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTTCCTTCCCGGGC--HHHHHHHHHHH--------HHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhhhccccccCccc--hhHHHHHHHHH--------HHHHHH
Confidence            68999999999999999999997   667887765421     1122222110  00000000000        000111


Q ss_pred             HHHhcCCC---c----ccccCCCCCC--ChHHHHHHHHHH------HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc-
Q 024529          157 HLGSFGVT---G----NLALQPMYTL--SGGQKSRVAFAK------ITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF-  220 (266)
Q Consensus       157 ~l~~~~l~---~----~~~~~~~~~L--SgGqkqRv~lAr------al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-  220 (266)
                      .+. -+..   +    ....+....+  |+|++|++.++.      +++.+|+...+|+   +||+..... ++.+... 
T Consensus        69 ~~~-~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~  143 (189)
T 2bdt_A           69 FLL-AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKG  143 (189)
T ss_dssp             HHH-TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTT
T ss_pred             HHh-cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcC
Confidence            111 1100   0    0000112234  888888887777      8888888888884   899877666 6655543 


Q ss_pred             --CCEEEEEecC-HHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          221 --QGGILMVSHD-EHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       221 --~~tiiivtHd-~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                        +.++|.+||. ++.++.+||+|+  ++|+++ +.|+++.+.
T Consensus       144 ~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~-~~~~~~~~~  183 (189)
T 2bdt_A          144 IDERYFYNTSHLQPTNLNDIVKNLK--TNPRFI-FCMAGDPLE  183 (189)
T ss_dssp             CCTTSEEECSSSCGGGHHHHHHHHH--HCGGGS-CC-------
T ss_pred             CCccEEEeCCCCChhhHHHHHHHHh--hCCcEE-EeecCCchh
Confidence              4589999999 999999999998  999986 678876653

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.53  E-value=1.2e-15  Score=140.45  Aligned_cols=143  Identities=23%  Similarity=0.255  Sum_probs=88.0

Q ss_pred             eeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCC-----------CCCceEEEEcCeeeEEEEeccccCCCCCCCcHHH
Q 024529           72 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL-----------QPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLL  140 (266)
Q Consensus        72 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-----------~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~  140 (266)
                      -++++|+++.|+.++|+|+|||||||||++|+|..           .|+.|.|...+...+ .+.+.+  .+.  .... 
T Consensus       147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~-~l~Dtp--Gli--~~a~-  220 (416)
T 1udx_A          147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERF-TLADIP--GII--EGAS-  220 (416)
T ss_dssp             EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEE-EEEECC--CCC--CCGG-
T ss_pred             EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceE-EEEecc--ccc--cchh-
Confidence            47999999999999999999999999999999983           344454443321111 111211  110  0000 


Q ss_pred             HHHHhCCCCcHHH------HHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH---H
Q 024529          141 YMMRCFPGVPEQK------LRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAV---E  211 (266)
Q Consensus       141 ~~~~~~~~~~~~~------~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~---~  211 (266)
                          .........      +..++..+++.    +.++.+||+|++|++++|++|+..|.+|++    |.+|+...   .
T Consensus       221 ----~~~~L~~~fl~~~era~~lL~vvDls----~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~~~~  288 (416)
T 1udx_A          221 ----EGKGLGLEFLRHIARTRVLLYVLDAA----DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEEEAVK  288 (416)
T ss_dssp             ----GSCCSCHHHHHHHTSSSEEEEEEETT----SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHHHHH
T ss_pred             ----hhhhhhHHHHHHHHHHHhhhEEeCCc----cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhHHHHH
Confidence                000111111      11123333332    356778999999999999999999999999    99998644   2


Q ss_pred             HHHHHHhhcCCEEEEEe-cCHH
Q 024529          212 ALIQGLVLFQGGILMVS-HDEH  232 (266)
Q Consensus       212 ~l~~~l~~~~~tiiivt-Hd~~  232 (266)
                      .+.+.+.+.+.+++++| |..+
T Consensus       289 ~l~~~l~~~g~~vi~iSA~~g~  310 (416)
T 1udx_A          289 ALADALAREGLAVLPVSALTGA  310 (416)
T ss_dssp             HHHHHHHTTTSCEEECCTTTCT
T ss_pred             HHHHHHHhcCCeEEEEECCCcc
Confidence            23333444455666555 4433

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=99.52  E-value=8.3e-17  Score=129.49  Aligned_cols=58  Identities=16%  Similarity=0.156  Sum_probs=51.5

Q ss_pred             EEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcC
Q 024529           58 FSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA  117 (266)
Q Consensus        58 ~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~  117 (266)
                      ..++++.| ++..+++++||++++|++++|+||||||||||+|+|+|++ |++|+|...+
T Consensus        10 ~~~~~~~~-g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g   67 (158)
T 1htw_A           10 DEFSMLRF-GKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPT   67 (158)
T ss_dssp             SHHHHHHH-HHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCT
T ss_pred             CHHHHHHH-HHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECC
Confidence            35667788 4456899999999999999999999999999999999999 9999998665

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.50  E-value=8.1e-18  Score=151.27  Aligned_cols=158  Identities=14%  Similarity=0.050  Sum_probs=102.1

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------------e
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------V  119 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------------~  119 (266)
                      +|+++++++.|+ ...+++++||++.+|++++|+||||||||||+++|+|++.|++|+|.+.+.               .
T Consensus        29 ~ie~~~~~~~~~-~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~  107 (337)
T 2qm8_A           29 LAESRRADHRAA-VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKT  107 (337)
T ss_dssp             HHTCSSHHHHHH-HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGG
T ss_pred             HHeeCCcccccC-hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhh
Confidence            467788888883 456899999999999999999999999999999999999999999975431               1


Q ss_pred             eEEEEeccccCCCCCC---Cc-------HHH-------------------------HHHHh-------CCCCcHHH----
Q 024529          120 RIAVFSQHHVDGLDLS---SN-------PLL-------------------------YMMRC-------FPGVPEQK----  153 (266)
Q Consensus       120 ~i~~~~q~~~~~~~~~---~~-------~~~-------------------------~~~~~-------~~~~~~~~----  153 (266)
                      ++++++|++.......   ..       ...                         .+...       ......+.    
T Consensus       108 ~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i  187 (337)
T 2qm8_A          108 RMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGI  187 (337)
T ss_dssp             GSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------C
T ss_pred             hheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHH
Confidence            3455665432110000   00       000                         00000       00000000    


Q ss_pred             ---HHHHHHhcCCCccccc-CCCCCCChHHHHHHHHHHHHcc------CCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q 024529          154 ---LRAHLGSFGVTGNLAL-QPMYTLSGGQKSRVAFAKITFK------KPHIILLDEPSNHLDLDAVEALIQGLVL  219 (266)
Q Consensus       154 ---~~~~l~~~~l~~~~~~-~~~~~LSgGqkqRv~lAral~~------~p~lllLDEPt~~LD~~~~~~l~~~l~~  219 (266)
                         +.+....+.+.  ..+ .+...+|+|++|++..|++++.      .|+++.    ||++|..+...+++.+.+
T Consensus       188 ~~~i~~~~~ivvlN--K~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~  257 (337)
T 2qm8_A          188 KKGIFELADMIAVN--KADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIED  257 (337)
T ss_dssp             CTTHHHHCSEEEEE--CCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHH
T ss_pred             HHHHhccccEEEEE--chhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHH
Confidence               11111122221  122 1234689999999999999987      688876    999999998888887765

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=99.50  E-value=1.6e-13  Score=125.85  Aligned_cols=143  Identities=14%  Similarity=0.194  Sum_probs=81.6

Q ss_pred             EEeCCcEEEEECCCCchHHHHHH--HHhCCCCCCce-----EEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCc
Q 024529           78 GIDLDSRIAMVGPNGIGKSTILK--LIAGELQPSSG-----TVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVP  150 (266)
Q Consensus        78 ~i~~Ge~~~l~G~nGsGKSTLl~--~l~Gl~~p~~G-----~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~  150 (266)
                      -|++|++++|+||||||||||++  ++.++.+++.|     .+++++         +.    .+.               
T Consensus       174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~---------E~----~~~---------------  225 (400)
T 3lda_A          174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDT---------EG----TFR---------------  225 (400)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES---------SS----CCC---------------
T ss_pred             CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeC---------CC----ccC---------------
Confidence            58899999999999999999999  44677776544     333221         11    011               


Q ss_pred             HHHHHHHHHhcCCCcc--cccCCCCCCChHHH--HHHHHHHHHc--cCCCEEEEeCCCCCCCHHHH------------HH
Q 024529          151 EQKLRAHLGSFGVTGN--LALQPMYTLSGGQK--SRVAFAKITF--KKPHIILLDEPSNHLDLDAV------------EA  212 (266)
Q Consensus       151 ~~~~~~~l~~~~l~~~--~~~~~~~~LSgGqk--qRv~lAral~--~~p~lllLDEPt~~LD~~~~------------~~  212 (266)
                      ..++....+.+++...  +.+-.+.....++.  +.+.-+..++  .+|+++++|||++.+|....            ..
T Consensus       226 ~~rl~~~a~~~gl~~~~vleni~~~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~  305 (400)
T 3lda_A          226 PVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAK  305 (400)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCChHhHhhcEEEeccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHH
Confidence            1112222223333210  00001111222333  3333333332  57999999999999996422            33


Q ss_pred             HHHHH----hhcCCEEEEEecCH-------------------HHHHhhcCEEEEEeCCe
Q 024529          213 LIQGL----VLFQGGILMVSHDE-------------------HLISGSVEELWVVSEGK  248 (266)
Q Consensus       213 l~~~l----~~~~~tiiivtHd~-------------------~~~~~~~d~i~~l~~G~  248 (266)
                      +++.|    ++++.|||+|+|..                   ..+..++|.++.|+.++
T Consensus       306 il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~  364 (400)
T 3lda_A          306 FMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK  364 (400)
T ss_dssp             HHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred             HHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence            44443    34578999999982                   22466799999998653

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=99.49  E-value=3.9e-15  Score=121.32  Aligned_cols=108  Identities=14%  Similarity=0.133  Sum_probs=69.8

Q ss_pred             eEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHH
Q 024529           76 NFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLR  155 (266)
Q Consensus        76 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (266)
                      +|.+++|+.++|+||||||||||+++|++.+.|.+|...       .|+            +.....         ..+.
T Consensus        32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~-------~~~------------~~~~~~---------~~~~   83 (180)
T 3ec2_A           32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRG-------YFF------------DTKDLI---------FRLK   83 (180)
T ss_dssp             SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCC-------CEE------------EHHHHH---------HHHH
T ss_pred             hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeE-------EEE------------EHHHHH---------HHHH
Confidence            466778999999999999999999999998876666311       010            000000         0011


Q ss_pred             HHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHHHHHHHHHHhh---cCCEEEEEecCH
Q 024529          156 AHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN-HLDLDAVEALIQGLVL---FQGGILMVSHDE  231 (266)
Q Consensus       156 ~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~-~LD~~~~~~l~~~l~~---~~~tiiivtHd~  231 (266)
                      .....-.            ..        -+...+.+|++|+||||++ ++|+.....+.+.+..   .+.++|++||..
T Consensus        84 ~~~~~~~------------~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~  143 (180)
T 3ec2_A           84 HLMDEGK------------DT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS  143 (180)
T ss_dssp             HHHHHTC------------CS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred             HHhcCch------------HH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence            1111000            00        0112234999999999995 8999988877776643   467899999976

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.48  E-value=5.1e-14  Score=126.18  Aligned_cols=127  Identities=17%  Similarity=0.186  Sum_probs=72.1

Q ss_pred             EEEEECCCCchHHHHHHHHhC-CCCCCceEEEEcCe---------eeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHH
Q 024529           84 RIAMVGPNGIGKSTILKLIAG-ELQPSSGTVFRSAK---------VRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQK  153 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~~~---------~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (266)
                      .+.|.||||+|||||+++|++ ++.|+.|.+.+++.         ..++++++.....+....  .       .......
T Consensus        38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~~  108 (354)
T 1sxj_E           38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSD--M-------GNNDRIV  108 (354)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC-------------CCHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhh--c-------CCcchHH
Confidence            389999999999999999999 88999998876542         224444443321111100  0       0011112


Q ss_pred             HHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCH
Q 024529          154 LRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDE  231 (266)
Q Consensus       154 ~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~  231 (266)
                      +++.++.+.-.... .... .|||           +..+|+++|+|||++ ||+.+...+.+.+.+.  +.++|++||+.
T Consensus       109 ~~~~i~~~~~~~~~-~~~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~  174 (354)
T 1sxj_E          109 IQELLKEVAQMEQV-DFQD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSM  174 (354)
T ss_dssp             HHHHHHHHTTTTC-------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred             HHHHHHHHHHhccc-cccc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence            33333332211111 1111 5676           778999999999999 9999999999999875  34799999986


Q ss_pred             HH
Q 024529          232 HL  233 (266)
Q Consensus       232 ~~  233 (266)
                      +.
T Consensus       175 ~~  176 (354)
T 1sxj_E          175 SP  176 (354)
T ss_dssp             CS
T ss_pred             HH
Confidence            53

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.46  E-value=2.5e-14  Score=113.80  Aligned_cols=91  Identities=16%  Similarity=0.176  Sum_probs=62.9

Q ss_pred             ceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCc
Q 024529           71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVP  150 (266)
Q Consensus        71 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~  150 (266)
                      +++++     +|+.++|+||||||||||+++|++...+ +|.       .+.|+.....     ...             
T Consensus        30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~-------~~~~~~~~~~-----~~~-------------   78 (149)
T 2kjq_A           30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGK-------NAAYIDAASM-----PLT-------------   78 (149)
T ss_dssp             HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTC-------CEEEEETTTS-----CCC-------------
T ss_pred             HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCC-------cEEEEcHHHh-----hHH-------------
Confidence            45555     8999999999999999999999998876 451       1223322111     000             


Q ss_pred             HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHh---hcCCE-EEE
Q 024529          151 EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV---LFQGG-ILM  226 (266)
Q Consensus       151 ~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~---~~~~t-iii  226 (266)
                                                           +++.+|++|++|||++ +|....+.+++.+.   +.+.+ +|+
T Consensus        79 -------------------------------------~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iii  120 (149)
T 2kjq_A           79 -------------------------------------DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLL  120 (149)
T ss_dssp             -------------------------------------GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred             -------------------------------------HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEE
Confidence                                                 2356899999999998 55554666666554   34567 888


Q ss_pred             EecC
Q 024529          227 VSHD  230 (266)
Q Consensus       227 vtHd  230 (266)
                      +||.
T Consensus       121 ts~~  124 (149)
T 2kjq_A          121 GSEY  124 (149)
T ss_dssp             EESS
T ss_pred             ECCC
Confidence            8884

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=99.45  E-value=3.7e-17  Score=150.74  Aligned_cols=135  Identities=16%  Similarity=0.118  Sum_probs=86.9

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee---------------
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV---------------  119 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~---------------  119 (266)
                      .++++++++.| +...+|+++ +. .+|++++|+|||||||||||++|+|++.|++|.|...+..               
T Consensus       143 ~~~l~~Lg~~~-~~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~  219 (418)
T 1p9r_A          143 RLDLHSLGMTA-HNHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNP  219 (418)
T ss_dssp             CCCGGGSCCCH-HHHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBG
T ss_pred             CCCHHHcCCCH-HHHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEcc
Confidence            45667777666 334477887 53 8999999999999999999999999999999998754321               


Q ss_pred             eEEEEe---------ccccCCC--CCC--CcHHHHHHHh-C--------CCCcHHHHHHHHHhcCCCcccccCCCCCCCh
Q 024529          120 RIAVFS---------QHHVDGL--DLS--SNPLLYMMRC-F--------PGVPEQKLRAHLGSFGVTGNLALQPMYTLSG  177 (266)
Q Consensus       120 ~i~~~~---------q~~~~~~--~~~--~~~~~~~~~~-~--------~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg  177 (266)
                      .+++.+         |++...+  .+.  .+....+... .        ...+...+...|..+++...   ..+..|||
T Consensus       220 ~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~---~~~~~LSg  296 (418)
T 1p9r_A          220 RVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPF---LISSSLLG  296 (418)
T ss_dssp             GGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHH---HHHHHEEE
T ss_pred             ccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHH---HHHHHHHH
Confidence            112222         4331100  001  1122222111 0        01112234445777888643   25678999


Q ss_pred             HHHHHHHHHHHHccCCCEEE
Q 024529          178 GQKSRVAFAKITFKKPHIIL  197 (266)
Q Consensus       178 GqkqRv~lAral~~~p~lll  197 (266)
                      ||+||  |||+|+.+|+++.
T Consensus       297 g~~QR--LaraL~~~p~~~~  314 (418)
T 1p9r_A          297 VLAQR--LVRTLCPDCKEPY  314 (418)
T ss_dssp             EEEEE--EEEEECTTTCEEE
T ss_pred             HHHHH--hhhhhcCCCCccC
Confidence            99999  9999999999876

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=99.45  E-value=2.8e-14  Score=128.70  Aligned_cols=111  Identities=16%  Similarity=0.067  Sum_probs=74.5

Q ss_pred             ceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC-CCceEEEEc-C-------eeeEEEEeccccCCCCCCCcHHHH
Q 024529           71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-PSSGTVFRS-A-------KVRIAVFSQHHVDGLDLSSNPLLY  141 (266)
Q Consensus        71 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~-~-------~~~i~~~~q~~~~~~~~~~~~~~~  141 (266)
                      -++++++.+ +|++++|+||||||||||+|+|+|+.. |++|+|... +       ...+++++|....  ..+.+...+
T Consensus       205 gl~~L~~~~-~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l--~dtpgv~e~  281 (358)
T 2rcn_A          205 GLKPLEEAL-TGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDV--IDSPGVREF  281 (358)
T ss_dssp             THHHHHHHH-TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEE--EECHHHHTC
T ss_pred             CHHHHHHhc-CCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEe--cCcccHHHh
Confidence            357777754 799999999999999999999999999 999999764 3       2357888876421  111111110


Q ss_pred             HHHhCCCCcH----HHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHH
Q 024529          142 MMRCFPGVPE----QKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT  189 (266)
Q Consensus       142 ~~~~~~~~~~----~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral  189 (266)
                         .......    ..+.++++.+++.. ..+.++.+|| ||+||++||+++
T Consensus       282 ---~l~~l~~~e~~~~~~e~l~~~gl~~-f~~~~~~~lS-G~~~r~ala~gl  328 (358)
T 2rcn_A          282 ---GLWHLEPEQITQGFVEFHDYLGHCK-YRDCKHDADP-GCAIREAVENGA  328 (358)
T ss_dssp             ---CCCCCCHHHHHHTSGGGGGGTTCSS-STTCCSSSCT-TCHHHHHHHHTS
T ss_pred             ---hhcCCCHHHHHHHHHHHHHHcCCch-hcCCCcccCC-HHHHHHHHHhcC
Confidence               1112222    23456778888874 4677889999 999999999875

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=99.44  E-value=2e-16  Score=149.32  Aligned_cols=159  Identities=13%  Similarity=0.105  Sum_probs=96.5

Q ss_pred             cceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee--------eEEEEeccccCC--C-------
Q 024529           70 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV--------RIAVFSQHHVDG--L-------  132 (266)
Q Consensus        70 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~--------~i~~~~q~~~~~--~-------  132 (266)
                      .+++++++.+++|+.++|+|||||||||||++|+|+++|++|.|.+.+..        .+.+..+.....  .       
T Consensus       248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~  327 (511)
T 2oap_1          248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLR  327 (511)
T ss_dssp             HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHH
T ss_pred             HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHH
Confidence            46789999999999999999999999999999999999999999876532        233443321100  0       


Q ss_pred             -------------CCCCcHH-HHHHHhCCCC------cHHHHHHHHHhc-----CCCcccc---c---CCCCCCChHHHH
Q 024529          133 -------------DLSSNPL-LYMMRCFPGV------PEQKLRAHLGSF-----GVTGNLA---L---QPMYTLSGGQKS  181 (266)
Q Consensus       133 -------------~~~~~~~-~~~~~~~~~~------~~~~~~~~l~~~-----~l~~~~~---~---~~~~~LSgGqkq  181 (266)
                                   .+..... ..+.....+.      ....+.++++++     ++...+.   +   .....+|+||+|
T Consensus       328 ~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G~~~  407 (511)
T 2oap_1          328 AALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGNTRL  407 (511)
T ss_dssp             TTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSSCEE
T ss_pred             HhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCCCce
Confidence                         0111111 1111100000      001122223322     2221111   1   123468999999


Q ss_pred             HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEE--EecCHHHHHhhcCE
Q 024529          182 RVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILM--VSHDEHLISGSVEE  240 (266)
Q Consensus       182 Rv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiii--vtHd~~~~~~~~d~  240 (266)
                      |.++|.          + | |+|||+.+...+++.+.++   +.|+++  +||+++.+...|+.
T Consensus       408 R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g~  459 (511)
T 2oap_1          408 RRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLGV  459 (511)
T ss_dssp             EEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHTS
T ss_pred             EEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcCC
Confidence            877641          1 7 9999997765555555433   457775  89999999888763

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=99.43  E-value=5.8e-16  Score=126.13  Aligned_cols=97  Identities=18%  Similarity=0.118  Sum_probs=61.8

Q ss_pred             cEEEEECCCCchHHHHHHHHhCCCCCC---ceEEEEcCee---------------eEE----EEeccccCCCCCCCcHHH
Q 024529           83 SRIAMVGPNGIGKSTILKLIAGELQPS---SGTVFRSAKV---------------RIA----VFSQHHVDGLDLSSNPLL  140 (266)
Q Consensus        83 e~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~~~~---------------~i~----~~~q~~~~~~~~~~~~~~  140 (266)
                      ++++|+|+||||||||+++|+|+++|+   .|.|..++..               .++    +++|+....  +.     
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~--i~-----   75 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF--IR-----   75 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE--EE-----
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE--Ee-----
Confidence            589999999999999999999999998   8999866532               122    333322110  00     


Q ss_pred             HHHHhCCCCcHH--HHHHHHHh-c-CCCcccccCCCCCCChHHHHHHHHHHHHccCCCEE
Q 024529          141 YMMRCFPGVPEQ--KLRAHLGS-F-GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII  196 (266)
Q Consensus       141 ~~~~~~~~~~~~--~~~~~l~~-~-~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll  196 (266)
                            ....+.  .+.+++.. + +++..    -...|||||+||++||||++.+|++.
T Consensus        76 ------~~~~~~~a~l~~~i~~~l~g~dt~----i~EglSgGq~qri~lARall~~p~i~  125 (171)
T 2f1r_A           76 ------RVSEEEGNDLDWIYERYLSDYDLV----ITEGFSKAGKDRIVVVKKPEEVEHFR  125 (171)
T ss_dssp             ------ECCHHHHTCHHHHHHHHTTTCSEE----EEESCGGGCCCEEEECSSGGGGGGGC
T ss_pred             ------cCChhhhhCHHHHHHhhCCCCCEE----EECCcCCCCCcEEEEEecccCCCccC
Confidence                  000111  23444444 3 33322    22349999999999999999999873

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=99.42  E-value=4.6e-15  Score=130.62  Aligned_cols=121  Identities=17%  Similarity=0.048  Sum_probs=77.5

Q ss_pred             eCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHh-----------CC-
Q 024529           80 DLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRC-----------FP-  147 (266)
Q Consensus        80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~-----------~~-  147 (266)
                      .++.+++|+|++|||||||.+.|++++.+. |.    ....+.+++|+.+.   ........+...           .+ 
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g~----~~~~~~iv~~D~f~---~~~~~~~~l~~~~~~~~l~~~~g~p~  100 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-YG----GEKSIGYASIDDFY---LTHEDQLKLNEQFKNNKLLQGRGLPG  100 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-HG----GGSCEEEEEGGGGB---CCHHHHHHHHHHTTTCGGGSSSCSTT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-CC----CCceEEEecccccc---CChHHHHHHhccccccchhhhccCcc
Confidence            467899999999999999999999998763 20    01223444777542   122223332111           11 


Q ss_pred             CCcHHHHHHHHHhcCCC------c-ccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH
Q 024529          148 GVPEQKLRAHLGSFGVT------G-NLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLD  208 (266)
Q Consensus       148 ~~~~~~~~~~l~~~~l~------~-~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~  208 (266)
                      ..+...+.+.++.+.-.      . .........+||||+||+++|++...+|+|||+||||+++|+.
T Consensus       101 a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~  168 (290)
T 1odf_A          101 THDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI  168 (290)
T ss_dssp             SBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred             hhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence            12345566666665332      1 1112334689999999999984333399999999999999985

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=99.41  E-value=6e-16  Score=129.42  Aligned_cols=139  Identities=15%  Similarity=0.111  Sum_probs=80.8

Q ss_pred             EeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHH----HhCC-CCcHHH
Q 024529           79 IDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMM----RCFP-GVPEQK  153 (266)
Q Consensus        79 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~----~~~~-~~~~~~  153 (266)
                      .++|++++|+||||||||||+++|+|+++|+ |       ..+++++++..   .+.........    ...+ ......
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g-------~~~g~v~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G-------LPAEVVPMDGF---HLDNRLLEPRGLLPRKGAPETFDFEG   87 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T-------CCEEEEESGGG---BCCHHHHGGGTCGGGTTSGGGBCHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C-------CceEEEecCCC---cCCHHHHHHhcccccCCCCchhhHHH
Confidence            4789999999999999999999999999864 2       12334444322   11111110000    0000 112222


Q ss_pred             HHHHHHhcCCCc----ccccCCCCCCChHHHHHHHHH-HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEe
Q 024529          154 LRAHLGSFGVTG----NLALQPMYTLSGGQKSRVAFA-KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVS  228 (266)
Q Consensus       154 ~~~~l~~~~l~~----~~~~~~~~~LSgGqkqRv~lA-ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivt  228 (266)
                      +.+.+..+...+    ...+ ....+|+||+||+++| ++++.++.++++|||..           ..+...-..+|+++
T Consensus        88 ~~~~l~~l~~~~~i~~p~~d-~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~~l~~~~d~~i~vd  155 (208)
T 3c8u_A           88 FQRLCHALKHQERVIYPLFD-RARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------RDLTAIWDVSIRLE  155 (208)
T ss_dssp             HHHHHHHHHHCSCEEEEEEE-TTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------GGGGGTCSEEEEEC
T ss_pred             HHHHHHHHhcCCceecccCC-ccccCCCCCceEEcCCCcEEEECCceeccCCchh-----------HHHHHhcCEEEEEe
Confidence            333333321111    1112 2346799999999998 88888888888888841           11233335788888


Q ss_pred             cCHHH-HHhhcCE
Q 024529          229 HDEHL-ISGSVEE  240 (266)
Q Consensus       229 Hd~~~-~~~~~d~  240 (266)
                      ++.+. +.+.+.|
T Consensus       156 ~~~~~~~~R~~~R  168 (208)
T 3c8u_A          156 VPMADLEARLVQR  168 (208)
T ss_dssp             CCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH
Confidence            88876 4555554

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=99.40  E-value=1.4e-16  Score=142.06  Aligned_cols=55  Identities=11%  Similarity=0.118  Sum_probs=39.7

Q ss_pred             CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhh
Q 024529          174 TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGS  237 (266)
Q Consensus       174 ~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~  237 (266)
                      +||+||+||+..+++++.+|+++  |||      ......+..+. .+.+|+++||+...+..+
T Consensus       141 ~ls~g~~Q~~~ad~ill~k~dl~--de~------~~l~~~l~~l~-~~~~ii~~sh~~~~~~~l  195 (318)
T 1nij_A          141 QFTIAQSQVGYADRILLTKTDVA--GEA------EKLHERLARIN-ARAPVYTVTHGDIDLGLL  195 (318)
T ss_dssp             HCHHHHHHHHTCSEEEEECTTTC--SCT------HHHHHHHHHHC-SSSCEEECCSSCCCGGGG
T ss_pred             hchHHHHHHHhCCEEEEECcccC--CHH------HHHHHHHHHhC-CCCeEEEecccCCCHHHH
Confidence            79999999999999999999987  999      23333333332 256899999965444433

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=99.39  E-value=2.3e-14  Score=128.22  Aligned_cols=167  Identities=13%  Similarity=0.041  Sum_probs=93.3

Q ss_pred             EEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee-----------------eEEEEeccccCCCCCCCcHHH
Q 024529           78 GIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-----------------RIAVFSQHHVDGLDLSSNPLL  140 (266)
Q Consensus        78 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-----------------~i~~~~q~~~~~~~~~~~~~~  140 (266)
                      ..++|++++|+||||||||||+++|+|+++|++|+|.+.+..                 .+.+++|...  .+...+...
T Consensus       125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~--~~p~~~v~e  202 (328)
T 3e70_C          125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYG--ADPAAVAYD  202 (328)
T ss_dssp             SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTT--CCHHHHHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEecccc--CCHHHHHHH
Confidence            347899999999999999999999999999999999865421                 1224444321  110001111


Q ss_pred             HHHHhC-CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHh-
Q 024529          141 YMMRCF-PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV-  218 (266)
Q Consensus       141 ~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~-  218 (266)
                      .+.... ...+    .-+++..|... ..       ..=..+.-.+++++..++.+++||.+|. .|..   .....+. 
T Consensus       203 ~l~~~~~~~~d----~vliDtaG~~~-~~-------~~l~~eL~~i~ral~~de~llvLDa~t~-~~~~---~~~~~~~~  266 (328)
T 3e70_C          203 AIQHAKARGID----VVLIDTAGRSE-TN-------RNLMDEMKKIARVTKPNLVIFVGDALAG-NAIV---EQARQFNE  266 (328)
T ss_dssp             HHHHHHHHTCS----EEEEEECCSCC-TT-------TCHHHHHHHHHHHHCCSEEEEEEEGGGT-THHH---HHHHHHHH
T ss_pred             HHHHHHhccch----hhHHhhccchh-HH-------HHHHHHHHHHHHHhcCCCCEEEEecHHH-HHHH---HHHHHHHH
Confidence            110000 0000    00011112211 01       1112333358999999999999996664 3332   2233343 


Q ss_pred             hcCCEEEEEecCH---------HHHHhhcCEEEEEeCCeEEe--cCCChhHHHHH
Q 024529          219 LFQGGILMVSHDE---------HLISGSVEELWVVSEGKATP--FHGTFHDYKKM  262 (266)
Q Consensus       219 ~~~~tiiivtHd~---------~~~~~~~d~i~~l~~G~i~~--~~g~~~~~~~~  262 (266)
                      ..+.++|++||.-         ..+....-.|..+..|+.+.  ..-+++.+.+.
T Consensus       267 ~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v~dl~~~~~~~~~~~  321 (328)
T 3e70_C          267 AVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGYDDLRPFEKEWFLER  321 (328)
T ss_dssp             HSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSSTTCEEECCHHHHHHH
T ss_pred             hcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCccccccCCHHHHHHH
Confidence            4577999999943         23334456788888887421  12455665544

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=99.38  E-value=2.2e-14  Score=133.91  Aligned_cols=163  Identities=18%  Similarity=0.109  Sum_probs=93.1

Q ss_pred             eeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------------eeEEEEeccccCCCCC
Q 024529           72 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------------VRIAVFSQHHVDGLDL  134 (266)
Q Consensus        72 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------------~~i~~~~q~~~~~~~~  134 (266)
                      -+++||++.+|++++|+|+||||||||+++|+|+++|++|+|.+.+.                 ..++|++|...  ...
T Consensus       283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~--~~p  360 (503)
T 2yhs_A          283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTG--ADS  360 (503)
T ss_dssp             BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTT--CCH
T ss_pred             CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccC--cCH
Confidence            46899999999999999999999999999999999999999987431                 12456665431  111


Q ss_pred             CCcHHHHHHHhC-CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHc-cCC-CEEEEeCCCCCCCHHHHH
Q 024529          135 SSNPLLYMMRCF-PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF-KKP-HIILLDEPSNHLDLDAVE  211 (266)
Q Consensus       135 ~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~-~~p-~lllLDEPt~~LD~~~~~  211 (266)
                      ..+....+.... .+.+    .-+++..|.....     ..|-.-.+|++.+++++. ..| .+||...||.|.|...  
T Consensus       361 ~~tV~e~l~~a~~~~~D----vVLIDTaGrl~~~-----~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~--  429 (503)
T 2yhs_A          361 ASVIFDAIQAAKARNID----VLIADTAGRLQNK-----SHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVS--  429 (503)
T ss_dssp             HHHHHHHHHHHHHTTCS----EEEECCCCSCCCH-----HHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHH--
T ss_pred             HHHHHHHHHHHHhcCCC----EEEEeCCCccchh-----hhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHH--
Confidence            111111111000 0000    0001112221100     011112347788888764 446 4666666998866542  


Q ss_pred             HHHHHHh-hcCCEEEEEecCHH---------HHHhhcCEEEEEeCCe
Q 024529          212 ALIQGLV-LFQGGILMVSHDEH---------LISGSVEELWVVSEGK  248 (266)
Q Consensus       212 ~l~~~l~-~~~~tiiivtHd~~---------~~~~~~d~i~~l~~G~  248 (266)
                       ..+.+. ..+.+.|++||--.         .+..+.-.|..+..|.
T Consensus       430 -~ak~f~~~~~itgvIlTKLD~takgG~~lsi~~~~~~PI~fig~Ge  475 (503)
T 2yhs_A          430 -QAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGE  475 (503)
T ss_dssp             -HHHHHHHHTCCSEEEEECGGGCSCCTHHHHHHHHHCCCEEEEECSS
T ss_pred             -HHHHHHhhcCCCEEEEEcCCCcccccHHHHHHHHHCCCEEEEecCC
Confidence             233343 35678999999222         2333345677777765

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=99.37  E-value=8.8e-13  Score=116.26  Aligned_cols=131  Identities=18%  Similarity=0.086  Sum_probs=90.3

Q ss_pred             EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCC
Q 024529           56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLS  135 (266)
Q Consensus        56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~  135 (266)
                      +.++++++.|++ ..  ++++|+  +|++++|+|+||+||||++..|++++.+..|+|.+.+        .      +..
T Consensus        77 ~~~~~l~~~~~~-~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~--------~------d~~  137 (295)
T 1ls1_A           77 TVYEALKEALGG-EA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA--------A------DTQ  137 (295)
T ss_dssp             HHHHHHHHHTTS-SC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE--------C------CSS
T ss_pred             HHHHHHHHHHCC-CC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec--------C------Ccc
Confidence            456788888843 22  788888  8999999999999999999999999988888876421        1      111


Q ss_pred             CcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCC-CCCCCHHHHHHHH
Q 024529          136 SNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP-SNHLDLDAVEALI  214 (266)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEP-t~~LD~~~~~~l~  214 (266)
                      ......           ....+.+..++.- ....  ...+..+.+|.+|+++...+++++|+||| +.++|.....++.
T Consensus       138 ~~~~~~-----------ql~~~~~~~~l~~-~~~~--~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~  203 (295)
T 1ls1_A          138 RPAARE-----------QLRLLGEKVGVPV-LEVM--DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELA  203 (295)
T ss_dssp             CHHHHH-----------HHHHHHHHHTCCE-EECC--TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHH
T ss_pred             cHhHHH-----------HHHHhcccCCeEE-EEcC--CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHH
Confidence            111110           1112234445542 1100  12344566789999998899999999999 9999998777766


Q ss_pred             HHHhh
Q 024529          215 QGLVL  219 (266)
Q Consensus       215 ~~l~~  219 (266)
                      .....
T Consensus       204 ~~~~~  208 (295)
T 1ls1_A          204 RLKEV  208 (295)
T ss_dssp             HHHHH
T ss_pred             HHhhh
Confidence            65543

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=99.34  E-value=1.3e-15  Score=126.63  Aligned_cols=143  Identities=19%  Similarity=0.238  Sum_probs=76.8

Q ss_pred             eCCcEEEEECCCCchHHHHHHHHhCCCC-------------CCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHH--
Q 024529           80 DLDSRIAMVGPNGIGKSTILKLIAGELQ-------------PSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMR--  144 (266)
Q Consensus        80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-------------p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~--  144 (266)
                      ++|++++|+||||||||||+++|+|+++             |..|++  ++.   .|.++.        ...+.....  
T Consensus         2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~~--~g~---~~~~~~--------~~~~~~~i~~~   68 (198)
T 1lvg_A            2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEE--DGK---DYYFVT--------REMMQRDIAAG   68 (198)
T ss_dssp             ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCC--BTT---TBEECC--------HHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCccc--CCc---eEEEcc--------HHHHHHHHHcC
Confidence            5799999999999999999999999875             444432  111   011110        000100000  


Q ss_pred             ----------hCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHH---HHHH-HHccCCCEEEEeCCCCCCCHHHH
Q 024529          145 ----------CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRV---AFAK-ITFKKPHIILLDEPSNHLDLDAV  210 (266)
Q Consensus       145 ----------~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv---~lAr-al~~~p~lllLDEPt~~LD~~~~  210 (266)
                                ...+.+.+.+.++++.-...  ..+.   .+ .|-++..   ..++ +++.+|++++|||||+++|..+.
T Consensus        69 ~~l~~~~~~~n~~g~~~~~i~~~~~~~~~~--~~~~---~~-~g~~~~~~~~~~~~~~~l~~p~~~ilde~~~~~d~~~e  142 (198)
T 1lvg_A           69 DFIEHAEFSGNLYGTSKEAVRAVQAMNRIC--VLDV---DL-QGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNTETE  142 (198)
T ss_dssp             CEEEEEEETTEEEEEEHHHHHHHHHTTCEE--EEEC---CH-HHHHHHTTSSCCCEEEEEECSCHHHHHHHHHHHTCSCH
T ss_pred             CCEeeeeecCccCCCCHHHHHHHHHcCCcE--EEEC---CH-HHHHHHHhcCCCcEEEEEeCCCHHHHHHHHHhcCCCCH
Confidence                      00122455666666532111  0000   00 1111111   1455 68888999999999999998887


Q ss_pred             HHHHHHHhhcCCEEEEEecCHHHHHhhcCEEEEEeC
Q 024529          211 EALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSE  246 (266)
Q Consensus       211 ~~l~~~l~~~~~tiiivtHd~~~~~~~~d~i~~l~~  246 (266)
                      +.+.+.|...... +.++|.  .  ..+|+|+++++
T Consensus       143 ~~i~~~l~~~~~~-~~~a~~--~--~~~D~iivnd~  173 (198)
T 1lvg_A          143 ESLAKRLAAARTD-MESSKE--P--GLFDLVIINDD  173 (198)
T ss_dssp             HHHHHHHHHHHHH-TTGGGS--T--TTCSEEEECSS
T ss_pred             HHHHHHHHHHHHH-HHHhhc--c--CCceEEEECCC
Confidence            7777766543111 233552  1  46888877653

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.33  E-value=7.1e-15  Score=134.27  Aligned_cols=156  Identities=15%  Similarity=0.172  Sum_probs=100.4

Q ss_pred             EEeCCcEEEEECCCCchHHHHHHHHhC------------CCCCCceEEEEcCe------------ee---EEEEeccccC
Q 024529           78 GIDLDSRIAMVGPNGIGKSTILKLIAG------------ELQPSSGTVFRSAK------------VR---IAVFSQHHVD  130 (266)
Q Consensus        78 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G------------l~~p~~G~i~~~~~------------~~---i~~~~q~~~~  130 (266)
                      .++.|..++|+|+||+|||||+++|+|            ...|+.|.+.+.+.            ..   ..++.+.+-.
T Consensus        16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl   95 (392)
T 1ni3_A           16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL   95 (392)
T ss_dssp             SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence            346899999999999999999999999            56799999987651            11   1234443311


Q ss_pred             CCCCC--CcHH-HHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCC--CEEEEeCCCCCC
Q 024529          131 GLDLS--SNPL-LYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP--HIILLDEPSNHL  205 (266)
Q Consensus       131 ~~~~~--~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p--~lllLDEPt~~L  205 (266)
                      ....+  .... .++... ...     ..++..+...   .+..+..+||+.            +|  +++++|||+.++
T Consensus        96 ~~~~s~~e~L~~~fl~~i-r~~-----d~il~Vvd~~---~d~~i~~v~~~~------------dP~~di~ildeel~~~  154 (392)
T 1ni3_A           96 TKGASTGVGLGNAFLSHV-RAV-----DAIYQVVRAF---DDAEIIHVEGDV------------DPIRDLSIIVDELLIK  154 (392)
T ss_dssp             CCCCCSSSSSCHHHHHHH-TTC-----SEEEEEEECC---CTTCSSCCSSSS------------CHHHHHHHHHHHHHHH
T ss_pred             ccCCcHHHHHHHHHHHHH-HHH-----HHHHHHHhcc---ccceeeeecccc------------CcchhhhhchhhhHHH
Confidence            11111  0000 111100 000     0011112221   134455577753            89  999999999999


Q ss_pred             CHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEE-EEeCC-eEEecCCChh
Q 024529          206 DLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELW-VVSEG-KATPFHGTFH  257 (266)
Q Consensus       206 D~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~-~l~~G-~i~~~~g~~~  257 (266)
                      |+......++.+...    +.|++  +|+...+..+|+++. +|++| +++ +.|+.+
T Consensus       155 D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~-~~~~~~  209 (392)
T 1ni3_A          155 DAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQYLTETKQPI-RKGDWS  209 (392)
T ss_dssp             HHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCG-GGSCCC
T ss_pred             HHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHHHhccCCcee-ecCCCC
Confidence            999988887777654    33543  999999999999999 89999 775 446543

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=99.33  E-value=1.8e-12  Score=114.86  Aligned_cols=99  Identities=21%  Similarity=0.240  Sum_probs=73.7

Q ss_pred             eceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHH
Q 024529           74 NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQK  153 (266)
Q Consensus        74 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (266)
                      .+++...+|++++|+|||||||||+++.|++.+.+..|+|.+.+        .+.      .....           .+.
T Consensus        96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~--------~D~------~r~~a-----------~eq  150 (306)
T 1vma_A           96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA--------ADT------FRAAA-----------IEQ  150 (306)
T ss_dssp             CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE--------ECT------TCHHH-----------HHH
T ss_pred             CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc--------ccc------ccHHH-----------HHH
Confidence            45666788999999999999999999999999988888775321        111      11000           122


Q ss_pred             HHHHHHhcCCCcccccCCCCCCChHHHHHH---HHHHHHccCCCEEEEeCCCC
Q 024529          154 LRAHLGSFGVTGNLALQPMYTLSGGQKSRV---AFAKITFKKPHIILLDEPSN  203 (266)
Q Consensus       154 ~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv---~lAral~~~p~lllLDEPt~  203 (266)
                      +..+++.+++..      +..+|+|+.+++   +|++++..+|+++|+|||..
T Consensus       151 L~~~~~~~gl~~------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~  197 (306)
T 1vma_A          151 LKIWGERVGATV------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR  197 (306)
T ss_dssp             HHHHHHHHTCEE------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred             HHHHHHHcCCcE------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence            344556667642      235789999999   99999999999999999975

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.32  E-value=9e-14  Score=122.98  Aligned_cols=109  Identities=10%  Similarity=0.074  Sum_probs=74.1

Q ss_pred             EEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEE---cCe----------e-eEEEEeccccCC-C----CCC-Cc
Q 024529           78 GIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR---SAK----------V-RIAVFSQHHVDG-L----DLS-SN  137 (266)
Q Consensus        78 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~---~~~----------~-~i~~~~q~~~~~-~----~~~-~~  137 (266)
                      ++..|++++|+||||||||||+|+|+ +.+|++|+|..   .|+          . .++|++|.+... +    .++ .+
T Consensus       161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~e~  239 (302)
T 2yv5_A          161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKPRE  239 (302)
T ss_dssp             HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCGGG
T ss_pred             hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCHHH
Confidence            34579999999999999999999999 99999999987   442          1 368999886211 1    111 11


Q ss_pred             HHHHHH-------Hh----CCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHH
Q 024529          138 PLLYMM-------RC----FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAK  187 (266)
Q Consensus       138 ~~~~~~-------~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAr  187 (266)
                      ....+.       ..    ........+.++++.+++.+...++++..|||.+++++.|||
T Consensus       240 l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~  300 (302)
T 2yv5_A          240 VRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR  300 (302)
T ss_dssp             GGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred             HHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            100110       01    112234578899999999754556788899998899999986

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=99.31  E-value=4.1e-12  Score=112.00  Aligned_cols=136  Identities=13%  Similarity=0.138  Sum_probs=84.6

Q ss_pred             eCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHH
Q 024529           80 DLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLG  159 (266)
Q Consensus        80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  159 (266)
                      .+|++++|+|||||||||+++.|++.+.+++|.       ++.++.++..     .....            +.+..+.+
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~-------~V~lv~~D~~-----r~~a~------------eqL~~~~~  158 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK-------KIAFITTDTY-----RIAAV------------EQLKTYAE  158 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC-------CEEEEECCCS-----STTHH------------HHHHHHHT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-------EEEEEecCcc-----cchHH------------HHHHHHHH
Confidence            479999999999999999999999999887782       3445555432     11111            12222334


Q ss_pred             hcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH---HHhhc-C-CEEEEE--ecCHH
Q 024529          160 SFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ---GLVLF-Q-GGILMV--SHDEH  232 (266)
Q Consensus       160 ~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~---~l~~~-~-~tiiiv--tHd~~  232 (266)
                      .+++....      ..+ +..-+.+|++  +.+|+++|+|  |+|+|+.....+.+   .+... . .+++++  ||+..
T Consensus       159 ~~gl~~~~------~~~-~~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~  227 (296)
T 2px0_A          159 LLQAPLEV------CYT-KEEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYE  227 (296)
T ss_dssp             TTTCCCCB------CSS-HHHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHH
T ss_pred             hcCCCeEe------cCC-HHHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHH
Confidence            44543211      122 3334566664  4899999999  89999865443332   22211 1 234444  99998


Q ss_pred             HHHhhcCEEEEEeCCeEE
Q 024529          233 LISGSVEELWVVSEGKAT  250 (266)
Q Consensus       233 ~~~~~~d~i~~l~~G~i~  250 (266)
                      .+..+++++..+..+.++
T Consensus       228 ~~~~~~~~~~~l~~~giV  245 (296)
T 2px0_A          228 DMKHIVKRFSSVPVNQYI  245 (296)
T ss_dssp             HHHHHTTTTSSSCCCEEE
T ss_pred             HHHHHHHHHhcCCCCEEE
Confidence            888888876555555553

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=99.29  E-value=9e-13  Score=123.14  Aligned_cols=71  Identities=15%  Similarity=0.220  Sum_probs=56.3

Q ss_pred             CCCCChHHHHHHHHHH--HHcc---------------CCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHH
Q 024529          172 MYTLSGGQKSRVAFAK--ITFK---------------KPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLI  234 (266)
Q Consensus       172 ~~~LSgGqkqRv~lAr--al~~---------------~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~  234 (266)
                      .+.+||||+|-.-+|.  +++.               .-.+++|||. +-+|.+.....++.+++++--+|++|=+  .+
T Consensus       377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~lglQliiatP~--~i  453 (483)
T 3euj_A          377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERLDMQLLIAAPE--NI  453 (483)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHTTCEEEEEESS--SC
T ss_pred             cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHcCCEEEEECcc--hh
Confidence            4579999999644443  3322               2357999999 9999999999999999999999999988  56


Q ss_pred             HhhcCEEEEEe
Q 024529          235 SGSVEELWVVS  245 (266)
Q Consensus       235 ~~~~d~i~~l~  245 (266)
                      ..++|.++.+-
T Consensus       454 ~p~v~~~~~~~  464 (483)
T 3euj_A          454 SPERGTTYKLV  464 (483)
T ss_dssp             CCSSSEEEECC
T ss_pred             hhccCceEEEE
Confidence            66788887663

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=99.27  E-value=5.7e-11  Score=100.52  Aligned_cols=56  Identities=11%  Similarity=0.029  Sum_probs=40.7

Q ss_pred             cCCCEEEEeCCCCCC--CHHHHH----HHHHHHhhcCCEEEEEecCHHH--------HHhhcCEEEEEeC
Q 024529          191 KKPHIILLDEPSNHL--DLDAVE----ALIQGLVLFQGGILMVSHDEHL--------ISGSVEELWVVSE  246 (266)
Q Consensus       191 ~~p~lllLDEPt~~L--D~~~~~----~l~~~l~~~~~tiiivtHd~~~--------~~~~~d~i~~l~~  246 (266)
                      .+|+++++|+|++.+  |+....    .+.+.+++.+.+||+++|....        +..+||.++.|+.
T Consensus       127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~  196 (247)
T 2dr3_A          127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL  196 (247)
T ss_dssp             HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred             hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence            589999999999988  553222    3344445667899999998765        4578999999863

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=99.26  E-value=2.1e-15  Score=135.18  Aligned_cols=161  Identities=20%  Similarity=0.268  Sum_probs=95.9

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCC-------cEEEEECCCCchHHHHHHHHhCCC----CCCceEEEEcC------
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLD-------SRIAMVGPNGIGKSTILKLIAGEL----QPSSGTVFRSA------  117 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~G-------e~~~l~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~~------  117 (266)
                      +++.++++..|+ ...+++++++.+.+|       +.++|+||||+|||||+++|+|.+    .+++|.+...+      
T Consensus        18 ~lr~~~l~~~~g-~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~   96 (334)
T 1in4_A           18 FLRPKSLDEFIG-QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAI   96 (334)
T ss_dssp             TTSCSSGGGCCS-CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHH
T ss_pred             HcCCccHHHccC-cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHH
Confidence            355567777774 456889999999877       899999999999999999999987    66677664321      


Q ss_pred             -----eeeEEEEeccccCCCCCCCcHHHHHH---HhCC-------CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHH
Q 024529          118 -----KVRIAVFSQHHVDGLDLSSNPLLYMM---RCFP-------GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSR  182 (266)
Q Consensus       118 -----~~~i~~~~q~~~~~~~~~~~~~~~~~---~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqR  182 (266)
                           ...+.+++|...  +..  +..+.+.   ....       ......+...+..+++..  ...++..||+|++||
T Consensus        97 ~~~~~~~~v~~iDE~~~--l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~--at~~~~~Ls~~l~sR  170 (334)
T 1in4_A           97 LTSLERGDVLFIDEIHR--LNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG--ATTRSGLLSSPLRSR  170 (334)
T ss_dssp             HHHCCTTCEEEEETGGG--CCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE--EESCGGGSCHHHHTT
T ss_pred             HHHccCCCEEEEcchhh--cCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE--ecCCcccCCHHHHHh
Confidence                 234778877542  111  1222111   1110       111233444555566643  345668999999999


Q ss_pred             HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcC
Q 024529          183 VAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVE  239 (266)
Q Consensus       183 v~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d  239 (266)
                      +.++                .+||+.+..++.+.+++... ..-++|+.+.+..+|+
T Consensus       171 ~~l~----------------~~Ld~~~~~~l~~iL~~~~~-~~~~~~~~~~~~~ia~  210 (334)
T 1in4_A          171 FGII----------------LELDFYTVKELKEIIKRAAS-LMDVEIEDAAAEMIAK  210 (334)
T ss_dssp             CSEE----------------EECCCCCHHHHHHHHHHHHH-HTTCCBCHHHHHHHHH
T ss_pred             cCce----------------eeCCCCCHHHHHHHHHHHHH-HcCCCcCHHHHHHHHH
Confidence            8654                55666555555554433210 0013677777666654

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=99.20  E-value=3.3e-15  Score=130.44  Aligned_cols=137  Identities=18%  Similarity=0.172  Sum_probs=82.0

Q ss_pred             CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee-----------eEEEEeccccCCCCCCCc
Q 024529           69 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-----------RIAVFSQHHVDGLDLSSN  137 (266)
Q Consensus        69 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-----------~i~~~~q~~~~~~~~~~~  137 (266)
                      ..+++++++++++|  ++|+||||||||||+++|+|...+  |.|.+.+..           .+++++|..... .....
T Consensus        33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~-~p~i~  107 (274)
T 2x8a_A           33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNS-APCVI  107 (274)
T ss_dssp             HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHT-CSEEE
T ss_pred             HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhc-CCCeE
Confidence            45789999999999  999999999999999999998876  566654321           011122110000 00000


Q ss_pred             HHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC------------CC
Q 024529          138 PLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN------------HL  205 (266)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~------------~L  205 (266)
                      .++++-..   .......    ..+......++.+..|||||+||+.|++|+..+|++|  |||+.            --
T Consensus       108 ~~Deid~~---~~~r~~~----~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P  178 (274)
T 2x8a_A          108 FFDEVDAL---CPRRSDR----ETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLP  178 (274)
T ss_dssp             EEETCTTT---CC-------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSC
T ss_pred             eeehhhhh---hcccCCC----cchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCc
Confidence            00000000   0000000    0000112233456789999999999999999999985  99864            34


Q ss_pred             CHHHHHHHHHHHhh
Q 024529          206 DLDAVEALIQGLVL  219 (266)
Q Consensus       206 D~~~~~~l~~~l~~  219 (266)
                      |...+..+++.+.+
T Consensus       179 ~~~~r~~il~~~~~  192 (274)
T 2x8a_A          179 PPADRLAILKTITK  192 (274)
T ss_dssp             CHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHh
Confidence            67788888887653

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=99.16  E-value=2.7e-11  Score=112.81  Aligned_cols=164  Identities=14%  Similarity=0.150  Sum_probs=100.5

Q ss_pred             cceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHH-----
Q 024529           70 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMR-----  144 (266)
Q Consensus        70 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~-----  144 (266)
                      ..|+++..-+.+|+++.|.|++|+|||||+..|++...+..|.       .+.|+.-+.    .. ......+..     
T Consensus       191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~-------~Vl~~s~E~----s~-~~l~~r~~~~~~~~  258 (454)
T 2r6a_A          191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNE-------NVAIFSLEM----SA-QQLVMRMLCAEGNI  258 (454)
T ss_dssp             HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSC-------CEEEEESSS----CH-HHHHHHHHHHHHTC
T ss_pred             HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCC-------cEEEEECCC----CH-HHHHHHHHHHHcCC
Confidence            4678888889999999999999999999999999876554341       122332211    00 001111100     


Q ss_pred             -----hCCCCcH---HHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHc--cCCCEEEEeCCCCCCCH-------
Q 024529          145 -----CFPGVPE---QKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF--KKPHIILLDEPSNHLDL-------  207 (266)
Q Consensus       145 -----~~~~~~~---~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~--~~p~lllLDEPt~~LD~-------  207 (266)
                           .......   .++.+.++.++...... .....+|.++.+  +.++.+.  .+|+++++|+++...+.       
T Consensus       259 ~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i-~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~  335 (454)
T 2r6a_A          259 NAQNLRTGKLTPEDWGKLTMAMGSLSNAGIYI-DDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENR  335 (454)
T ss_dssp             CHHHHHTSCCCHHHHHHHHHHHHHHHSSCEEE-ECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----C
T ss_pred             CHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEE-ECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCH
Confidence                 0011222   22334444443322222 223579999987  4556665  68999999999988742       


Q ss_pred             -HHHHHHHHHHh----hcCCEEEEEec---------C--HH--------HHHhhcCEEEEEeCCe
Q 024529          208 -DAVEALIQGLV----LFQGGILMVSH---------D--EH--------LISGSVEELWVVSEGK  248 (266)
Q Consensus       208 -~~~~~l~~~l~----~~~~tiiivtH---------d--~~--------~~~~~~d~i~~l~~G~  248 (266)
                       .....+.+.|+    +.+.+||+++|         +  +.        .+...||.|++|..++
T Consensus       336 ~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~  400 (454)
T 2r6a_A          336 QQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDD  400 (454)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETT
T ss_pred             HHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEeccc
Confidence             23344544444    45789999999         3  22        4677899999998654

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=99.16  E-value=4.1e-13  Score=119.00  Aligned_cols=59  Identities=27%  Similarity=0.318  Sum_probs=54.1

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEE-------------------eCCcEEEEECCCCchHHHHHHHHhCCCC--CCceE
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGI-------------------DLDSRIAMVGPNGIGKSTILKLIAGELQ--PSSGT  112 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i-------------------~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~  112 (266)
                      .+|++++|++.|.   +++++++|.+                   .+|+++||+||||||||||+++|+|++.  |++|+
T Consensus        36 ~~i~~~~v~~~y~---~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~  112 (308)
T 1sq5_A           36 EDLSLEEVAEIYL---PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRR  112 (308)
T ss_dssp             TTCCHHHHHHTHH---HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCC
T ss_pred             cccchHhHHHHHH---HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCe
Confidence            3689999999993   5889999988                   9999999999999999999999999988  99999


Q ss_pred             EEE
Q 024529          113 VFR  115 (266)
Q Consensus       113 i~~  115 (266)
                      |.+
T Consensus       113 i~v  115 (308)
T 1sq5_A          113 VEL  115 (308)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            876

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.14  E-value=1.5e-12  Score=115.02  Aligned_cols=100  Identities=14%  Similarity=0.080  Sum_probs=59.7

Q ss_pred             EEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEE---cCe-----------eeEEEEeccccC-CCCC-------
Q 024529           77 FGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR---SAK-----------VRIAVFSQHHVD-GLDL-------  134 (266)
Q Consensus        77 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~---~~~-----------~~i~~~~q~~~~-~~~~-------  134 (266)
                      |++..|++++|+||||||||||+|+|+|+.+|++|+|..   .|+           ..+++++|.+.. .+.+       
T Consensus       164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~  243 (301)
T 1u0l_A          164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE  243 (301)
T ss_dssp             HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred             HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence            445679999999999999999999999999999999987   432           136888887621 1110       


Q ss_pred             ------CCcHHHHHH--Hh-CCCCcHHHHHHHHHhcCCCcccccCCCCCCCh
Q 024529          135 ------SSNPLLYMM--RC-FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSG  177 (266)
Q Consensus       135 ------~~~~~~~~~--~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg  177 (266)
                            ..+. .+..  .. .......++.++|+.++|.....++++..||+
T Consensus       244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse  294 (301)
T 1u0l_A          244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVKMFYE  294 (301)
T ss_dssp             HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence                  0000 0000  00 01223456889999999964445566677774

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=99.09  E-value=2e-11  Score=103.29  Aligned_cols=174  Identities=13%  Similarity=0.110  Sum_probs=71.2

Q ss_pred             cceeeceEEEeCCcEEEEECCCCchHHHHHHHHh-CCCC------------CCceEEEEcCeeeEEEEeccccCCCCCCC
Q 024529           70 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIA-GELQ------------PSSGTVFRSAKVRIAVFSQHHVDGLDLSS  136 (266)
Q Consensus        70 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~-Gl~~------------p~~G~i~~~~~~~i~~~~q~~~~~~~~~~  136 (266)
                      ...+++||++++|++++|+||||||||||+++|+ |+++            |..|++.  +   +.|.++..        
T Consensus        15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~~--g---~~~~~~~~--------   81 (231)
T 3lnc_A           15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEKE--G---KDYYFVDR--------   81 (231)
T ss_dssp             -------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCCB--T---TTBEECCH--------
T ss_pred             cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCccccC--C---CeEEEecH--------
Confidence            3568999999999999999999999999999999 9984            3333320  0   11222211        


Q ss_pred             cHHHHHHHh---------C---CCCcHHHHHHHHHhcCCCcccccCCCCCCCh--HHHHHH-HHH-HHHccCCCEEEEeC
Q 024529          137 NPLLYMMRC---------F---PGVPEQKLRAHLGSFGVTGNLALQPMYTLSG--GQKSRV-AFA-KITFKKPHIILLDE  200 (266)
Q Consensus       137 ~~~~~~~~~---------~---~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg--GqkqRv-~lA-ral~~~p~lllLDE  200 (266)
                      ..+..+...         .   .......+.+.++.-..  ...+-   .+.|  .-++++ .-+ .+++..|+..+++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--vild~---~~~g~~~~~~~~~~~~~~v~v~~~~~~~l~~  156 (231)
T 3lnc_A           82 EEFLRLCSNGEIIEHAEVFGNFYGVPRKNLEDNVDKGVS--TLLVI---DWQGAFKFMEMMREHVVSIFIMPPSMEELRR  156 (231)
T ss_dssp             HHHHHHHHTTCEEEEEEETTEEEEEECTTHHHHHHHTCE--EEEEC---CHHHHHHHHHHSGGGEEEEEEECSCHHHHHH
T ss_pred             HHhhhhhhcCceehhhhhccccCCCCHHHHHHHHHcCCe--EEEEc---CHHHHHHHHHhcCCCeEEEEEECCcHHHHHH
Confidence            001111000         0   00112223444433111  11110   0111  112322 111 23456777888899


Q ss_pred             CCCCCCHHHHHHHHHHHhh-------c-CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHHH
Q 024529          201 PSNHLDLDAVEALIQGLVL-------F-QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM  262 (266)
Q Consensus       201 Pt~~LD~~~~~~l~~~l~~-------~-~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~  262 (266)
                      ++...|..+.+.+.+.+..       . ...+++++|+++.+..-+.+++....++.. ...+.++|.+.
T Consensus       157 Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~~l~~~i~~~~~~~~-~~~~~~~~~~~  225 (231)
T 3lnc_A          157 RLCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNILRAEQMKTC-RQVGLRELLES  225 (231)
T ss_dssp             C--------------CHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHHHHHHHTBGG-GEESHHHHHHH
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHHHHHHHHHHHhhccc-cCcchhhHhhc
Confidence            9999887665555443321       1 236888899988876666655544444442 34555555543

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=99.05  E-value=1e-09  Score=98.77  Aligned_cols=137  Identities=18%  Similarity=0.233  Sum_probs=81.1

Q ss_pred             EEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHH
Q 024529           78 GIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAH  157 (266)
Q Consensus        78 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (266)
                      -+++|+++.|.||+|||||||+..++.......|.+        .|+.-+.    ..  ...                 .
T Consensus        57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~v--------lyi~~E~----~~--~~~-----------------~  105 (349)
T 2zr9_A           57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIA--------AFIDAEH----AL--DPE-----------------Y  105 (349)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCE--------EEEESSC----CC--CHH-----------------H
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeE--------EEEECCC----Cc--CHH-----------------H
Confidence            578999999999999999999888875443333333        2332221    11  111                 0


Q ss_pred             HHhcCCCcccccCCC-CCCChHHHHHHHHHHHHccC--CCEEEEeCCCCCC----------CH----HH--HHHHHH---
Q 024529          158 LGSFGVTGNLALQPM-YTLSGGQKSRVAFAKITFKK--PHIILLDEPSNHL----------DL----DA--VEALIQ---  215 (266)
Q Consensus       158 l~~~~l~~~~~~~~~-~~LSgGqkqRv~lAral~~~--p~lllLDEPt~~L----------D~----~~--~~~l~~---  215 (266)
                      .+.+|+...  +..+ ...+.  .+-+.++++++..  |+++++|||++.+          |+    ..  ....+.   
T Consensus       106 a~~lG~~~~--~l~i~~~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~  181 (349)
T 2zr9_A          106 AKKLGVDTD--SLLVSQPDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMT  181 (349)
T ss_dssp             HHHTTCCGG--GCEEECCSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHH
T ss_pred             HHHcCCCHH--HeEEecCCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHH
Confidence            122333211  0000 11233  3345678877654  9999999999998          32    11  122222   


Q ss_pred             -HHhhcCCEEEEEecCHH----------------HHHhhcCEEEEEeCCeE
Q 024529          216 -GLVLFQGGILMVSHDEH----------------LISGSVEELWVVSEGKA  249 (266)
Q Consensus       216 -~l~~~~~tiiivtHd~~----------------~~~~~~d~i~~l~~G~i  249 (266)
                       .+++.+.+||+++|-..                .+..+||.++.+..++.
T Consensus       182 ~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~  232 (349)
T 2zr9_A          182 GALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIET  232 (349)
T ss_dssp             HHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEE
T ss_pred             HHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeee
Confidence             23566889999999653                25668999988877654

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.05  E-value=1.5e-10  Score=94.80  Aligned_cols=37  Identities=22%  Similarity=0.239  Sum_probs=32.6

Q ss_pred             HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q 024529          181 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL  219 (266)
Q Consensus       181 qRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  219 (266)
                      +.+.+|++|+.+|+++++|  ||++|..+..++++.+.+
T Consensus       152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~  188 (191)
T 1oix_A          152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT  188 (191)
T ss_dssp             SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence            3467899999999999999  999999999999887754

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=99.04  E-value=9.8e-12  Score=110.01  Aligned_cols=103  Identities=14%  Similarity=0.115  Sum_probs=57.3

Q ss_pred             EEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEE---cCe--------ee--EEEEeccccCC-CCC-CCcHHHH
Q 024529           77 FGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR---SAK--------VR--IAVFSQHHVDG-LDL-SSNPLLY  141 (266)
Q Consensus        77 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~---~~~--------~~--i~~~~q~~~~~-~~~-~~~~~~~  141 (266)
                      +++.+|++++|+||||||||||+|+|+|+.+|..|+|..   .|+        ..  ++|++|.+... +.+ ..+. +.
T Consensus       168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~  246 (307)
T 1t9h_A          168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EE  246 (307)
T ss_dssp             GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred             HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HH
Confidence            556789999999999999999999999999999999986   332        11  58899886321 111 1222 22


Q ss_pred             HH-------Hh----------CCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHH
Q 024529          142 MM-------RC----------FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKS  181 (266)
Q Consensus       142 ~~-------~~----------~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkq  181 (266)
                      +.       ..          ........+.++++.+++..... .....|+.|++|
T Consensus       247 l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~-~~y~~lls~~~~  302 (307)
T 1t9h_A          247 LGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRY-DHYVEFMTEIKD  302 (307)
T ss_dssp             HGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHH-HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHH-HHHHHHHHHHhh
Confidence            21       00          11123456888999999974332 334567777776

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=99.00  E-value=2.2e-11  Score=104.74  Aligned_cols=54  Identities=19%  Similarity=0.265  Sum_probs=35.8

Q ss_pred             CCcEEEEee-EEEcCCCCcceeeceEEEeC---CcEEEEECCCCchHHHHHHHHhCCC
Q 024529           53 PPIISFSDA-SFGYPGGPILFKNLNFGIDL---DSRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        53 ~~~l~~~~l-~~~y~~~~~~l~~vsl~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .++|+++|+ ++.|+++..+|+++||+|.+   |++++|+|++||||||+.++|++.+
T Consensus        15 ~~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l   72 (250)
T 3nwj_A           15 SALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL   72 (250)
T ss_dssp             -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence            357999999 99994456799999999999   9999999999999999999999854

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=98.98  E-value=7.6e-11  Score=113.50  Aligned_cols=155  Identities=14%  Similarity=0.129  Sum_probs=95.8

Q ss_pred             EeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCc-eEEEEcCe------eeEEEEeccccCC
Q 024529           59 SDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSS-GTVFRSAK------VRIAVFSQHHVDG  131 (266)
Q Consensus        59 ~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~-G~i~~~~~------~~i~~~~q~~~~~  131 (266)
                      ++++.-| +...+++++++.+.+|+.++|+||||||||||+++|+++.++.. |.+.+.+.      ..+.++++.....
T Consensus        38 ~~l~~i~-G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~~  116 (604)
T 3k1j_A           38 KLIDQVI-GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRR  116 (604)
T ss_dssp             SHHHHCC-SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHHHH
T ss_pred             cccceEE-CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchHHH
Confidence            3444446 45568899999999999999999999999999999999998887 66654332      2355554432000


Q ss_pred             C------------CCCCcHHHHHH-H--------hCC--C-----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHH
Q 024529          132 L------------DLSSNPLLYMM-R--------CFP--G-----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRV  183 (266)
Q Consensus       132 ~------------~~~~~~~~~~~-~--------~~~--~-----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv  183 (266)
                      +            ......+.... .        ...  .     ........+   +|..+. .....+.+|+|++|++
T Consensus       117 ~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L---~G~~~~-~~~~~g~~~~g~~~~i  192 (604)
T 3k1j_A          117 IVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGAL---LGDVRH-DPFQSGGLGTPAHERV  192 (604)
T ss_dssp             HHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHH---HCEECC-CCC----CCCCGGGGE
T ss_pred             HHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhc---CceEEe-chhhcCCccccccccc
Confidence            0            00000000000 0        000  0     000011122   221111 1122357999999999


Q ss_pred             HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q 024529          184 AFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL  219 (266)
Q Consensus       184 ~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  219 (266)
                      ..++....++.+|+|||... |++.....+.+.|.+
T Consensus       193 ~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~  227 (604)
T 3k1j_A          193 EPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE  227 (604)
T ss_dssp             ECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred             cCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence            99999999999999999988 899999999888863

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=98.98  E-value=6.8e-12  Score=106.45  Aligned_cols=54  Identities=20%  Similarity=0.246  Sum_probs=42.5

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcC
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA  117 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~  117 (266)
                      .|+++|+...|+ .       +|++.+ ++++|+|||||||||||++|+|++.|++|.|.+++
T Consensus         9 ~l~l~~~~~~~~-~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g   62 (227)
T 1qhl_A            9 SLTLINWNGFFA-R-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRN   62 (227)
T ss_dssp             EEEEEEETTEEE-E-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC----
T ss_pred             EEEEEeeecccC-C-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECC
Confidence            488888876552 1       566666 89999999999999999999999999999887644

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=98.96  E-value=5.6e-12  Score=118.54  Aligned_cols=165  Identities=15%  Similarity=0.103  Sum_probs=93.6

Q ss_pred             eceEEEeCCcEEEEECCCCchHHHHHHHHhC--CCCCCceEEEE---cCeeeEEEEeccc--cCCC--CCCCcHHH--HH
Q 024529           74 NLNFGIDLDSRIAMVGPNGIGKSTILKLIAG--ELQPSSGTVFR---SAKVRIAVFSQHH--VDGL--DLSSNPLL--YM  142 (266)
Q Consensus        74 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G--l~~p~~G~i~~---~~~~~i~~~~q~~--~~~~--~~~~~~~~--~~  142 (266)
                      .+++++.++..+.|.|++||||||++++|..  ++.++.|++.+   +.+. ..  ++..  ...+  .+..+...  ..
T Consensus       159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~-~e--l~~~~~lPhl~~~Vvtd~~~a~~~  235 (512)
T 2ius_A          159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM-LE--LSVYEGIPHLLTEVVTDMKDAANA  235 (512)
T ss_dssp             EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS-SG--GGGGTTCTTBSSSCBCSHHHHHHH
T ss_pred             EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch-hh--hhhhccCCcccceeecCHHHHHHH
Confidence            5688889999999999999999999999876  55555565542   1110 00  0100  0011  11111111  01


Q ss_pred             HHhCCCCcHHHHHHHHHhcCCCccccc---CCCCCCChHHHHHH----------HHHHHHccCCC-EEEEeCCCCCCCHH
Q 024529          143 MRCFPGVPEQKLRAHLGSFGVTGNLAL---QPMYTLSGGQKSRV----------AFAKITFKKPH-IILLDEPSNHLDLD  208 (266)
Q Consensus       143 ~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~~~LSgGqkqRv----------~lAral~~~p~-lllLDEPt~~LD~~  208 (266)
                      .......-+++ .+.+...|+.+ +..   +....+|+||+|+.          ++|+++...|. ++++||+++.+|..
T Consensus       236 L~~~~~EmerR-~~ll~~~Gv~~-i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~  313 (512)
T 2ius_A          236 LRWCVNEMERR-YKLMSALGVRN-LAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV  313 (512)
T ss_dssp             HHHHHHHHHHH-HHHHHHTTCSS-HHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH
T ss_pred             HHHHHHHHHHH-HHHHHHcCCcc-HHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh
Confidence            11000111222 35677777753 211   11235788887752          35666778888 89999999888743


Q ss_pred             H--HHHHHHHHhh----cCCEEEEEecCHH-------HHHhhcCEEEE
Q 024529          209 A--VEALIQGLVL----FQGGILMVSHDEH-------LISGSVEELWV  243 (266)
Q Consensus       209 ~--~~~l~~~l~~----~~~tiiivtHd~~-------~~~~~~d~i~~  243 (266)
                      .  ...++..|.+    .+.++|++||+..       ...++.+||.+
T Consensus       314 ~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l  361 (512)
T 2ius_A          314 GKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF  361 (512)
T ss_dssp             HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred             hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence            2  2334444433    3558999999987       45556666654

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.91  E-value=4e-10  Score=92.88  Aligned_cols=32  Identities=16%  Similarity=0.421  Sum_probs=26.8

Q ss_pred             eEEEeCCcEEEEECCCCchHHHHHHHHhCCCC
Q 024529           76 NFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ  107 (266)
Q Consensus        76 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~  107 (266)
                      |+++.+|++++|+||||||||||+++|+|+++
T Consensus         1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~   32 (205)
T 3tr0_A            1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA   32 (205)
T ss_dssp             ----CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred             CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            57788999999999999999999999999964

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=98.90  E-value=2.7e-12  Score=116.75  Aligned_cols=127  Identities=14%  Similarity=0.150  Sum_probs=78.3

Q ss_pred             cceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEE-cC---e--eeEEEEecccc---CCCCCCCcHHH
Q 024529           70 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR-SA---K--VRIAVFSQHHV---DGLDLSSNPLL  140 (266)
Q Consensus        70 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~-~~---~--~~i~~~~q~~~---~~~~~~~~~~~  140 (266)
                      .+++++++.+++|++++|+||||||||||+++|+|.   .+|.+.. ..   .  ..+++++|...   +........  
T Consensus       157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~~~~~~~~~~lg~~~q~~~~l~dd~~~~~~~--  231 (377)
T 1svm_A          157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGE--  231 (377)
T ss_dssp             HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCSSCTTTHHHHHGGGTTCSCEEETTCCCSTTT--
T ss_pred             HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEeccchhHHHHHHHhcchhHHHHHHHHHHHHH--
Confidence            578999999999999999999999999999999985   4677654 21   0  12344444331   011100000  


Q ss_pred             HHHHhCCCCc----HHHHHHHHHh---------------cCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEE-EeC
Q 024529          141 YMMRCFPGVP----EQKLRAHLGS---------------FGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIIL-LDE  200 (266)
Q Consensus       141 ~~~~~~~~~~----~~~~~~~l~~---------------~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lll-LDE  200 (266)
                        .+......    ...+...++.               .-+.....+.....+++|+++|+..+.+++..|++++ ||+
T Consensus       232 --~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliyLd~  309 (377)
T 1svm_A          232 --SRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLER  309 (377)
T ss_dssp             --TTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHHHHT
T ss_pred             --HhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeEEEEeC
Confidence              00000000    1122333331               0111112234567899999999999888899999988 999


Q ss_pred             CCC
Q 024529          201 PSN  203 (266)
Q Consensus       201 Pt~  203 (266)
                      |+.
T Consensus       310 ~~~  312 (377)
T 1svm_A          310 SEF  312 (377)
T ss_dssp             CTH
T ss_pred             CHH
Confidence            986

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=98.87  E-value=9.5e-10  Score=91.00  Aligned_cols=126  Identities=21%  Similarity=0.164  Sum_probs=75.2

Q ss_pred             EEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGV  163 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l  163 (266)
                      +++|+|+|||||||+.++|+++     |...++.         +             .+...........+.++.+.+|.
T Consensus         4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~---------d-------------~~~~~~~~~~~~~~~~i~~~~g~   56 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDA---------D-------------VVAREVVAKDSPLLSKIVEHFGA   56 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHTT-----TCCEEEH---------H-------------HHHHHTTCSSCHHHHHHHHHHCT
T ss_pred             EEEEECCCCCCHHHHHHHHHHC-----CCcccch---------H-------------HHHHHHccCChHHHHHHHHHhCH
Confidence            6899999999999999999983     3222110         0             00000000111234455666664


Q ss_pred             CcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc-CCEEEEEecCHHHH--HhhcCE
Q 024529          164 TGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF-QGGILMVSHDEHLI--SGSVEE  240 (266)
Q Consensus       164 ~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~tiiivtHd~~~~--~~~~d~  240 (266)
                      ..        -.|.|+.+|..+++.+..+|+.+..+  ++.++|.....+.+.+... +.++|+.+|.+...  ...||.
T Consensus        57 ~~--------~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l~e~~~~~~~d~  126 (206)
T 1jjv_A           57 QI--------LTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIENKLTALCDR  126 (206)
T ss_dssp             TC--------C------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTCCSSEEEEECTTTTTTTCGGGCSE
T ss_pred             HH--------hccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhcCCCEEEEEechhhhcCcHhhCCE
Confidence            21        13678999999999888887654333  3445666666666666543 45788888987654  567999


Q ss_pred             EEEEeC
Q 024529          241 LWVVSE  246 (266)
Q Consensus       241 i~~l~~  246 (266)
                      +++++-
T Consensus       127 vi~l~~  132 (206)
T 1jjv_A          127 ILVVDV  132 (206)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            998863

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=98.85  E-value=1.8e-09  Score=88.73  Aligned_cols=35  Identities=17%  Similarity=0.275  Sum_probs=29.4

Q ss_pred             HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q 024529          183 VAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL  219 (266)
Q Consensus       183 v~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  219 (266)
                      ...|++++.+|+++++|  ||++|..+..++++.+.+
T Consensus       130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~  164 (199)
T 2f9l_A          130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILT  164 (199)
T ss_dssp             HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHH
Confidence            45689999999999999  999999988887776643

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=98.85  E-value=1.9e-09  Score=87.36  Aligned_cols=107  Identities=16%  Similarity=0.161  Sum_probs=66.0

Q ss_pred             eeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEE---------Ec--------CeeeEEEEeccccCCCCCC
Q 024529           73 KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF---------RS--------AKVRIAVFSQHHVDGLDLS  135 (266)
Q Consensus        73 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~---------~~--------~~~~i~~~~q~~~~~~~~~  135 (266)
                      +++++++.+| +++|+||||||||||+++|.+++.+..|...         ..        ....+.+++|++...+.+.
T Consensus        18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~   96 (182)
T 3kta_A           18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPID   96 (182)
T ss_dssp             SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSS
T ss_pred             ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcccccC
Confidence            7889999998 9999999999999999999998877665321         11        2245777777653222211


Q ss_pred             CcHHH---HHH----H----hCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHH
Q 024529          136 SNPLL---YMM----R----CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVA  184 (266)
Q Consensus       136 ~~~~~---~~~----~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~  184 (266)
                      ...+.   .+.    .    ........++.+++..+++..+.    ..-++.||.+++.
T Consensus        97 ~~~~~i~r~~~~~~~~~~~i~g~~~~~~~~~~~l~~~~l~~~~----~~~~~qg~~~~l~  152 (182)
T 3kta_A           97 EDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMISPDG----YNIVLQGDITKFI  152 (182)
T ss_dssp             SSEEEEEEEECTTSCEEEEETTEEECHHHHHHHHHHTTCCTTC----TTEECTTCTTHHH
T ss_pred             CcEEEEEEEEEeCCcEEEEECCeEcCHHHHHHHHHHcCCCCCC----CEEEEcccHHHHH
Confidence            00000   000    0    00012356788889988886432    1346666666654

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=98.83  E-value=4.7e-09  Score=94.55  Aligned_cols=122  Identities=16%  Similarity=0.152  Sum_probs=76.2

Q ss_pred             CCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEE-cCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHH
Q 024529           81 LDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR-SAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLG  159 (266)
Q Consensus        81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~-~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  159 (266)
                      ..-.++|+|++|+|||||++.|+|.. +..|.... .....++.+.+...   .                     ..+++
T Consensus       166 ~~~~v~lvG~~gvGKSTLin~L~~~~-~~~~~~~~~t~~~~~~~~~~~~~---~---------------------~~l~D  220 (357)
T 2e87_A          166 EIPTVVIAGHPNVGKSTLLKALTTAK-PEIASYPFTTRGINVGQFEDGYF---R---------------------YQIID  220 (357)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHCSSC-CEEECCTTCSSCEEEEEEEETTE---E---------------------EEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCeeeceeEEEEEecCc---e---------------------EEEEe
Confidence            34589999999999999999999865 22111100 00011222211100   0                     00111


Q ss_pred             hcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEe-CCCCCCCHHHHHHHHHHHhhc--CCEEEEEe--cCHH
Q 024529          160 SFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD-EPSNHLDLDAVEALIQGLVLF--QGGILMVS--HDEH  232 (266)
Q Consensus       160 ~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLD-EPt~~LD~~~~~~l~~~l~~~--~~tiiivt--Hd~~  232 (266)
                      .-|+.    +.+...+|+|++|++. +.+...++-++++| +|++++|......+++.+...  +..+|+|.  ||+.
T Consensus       221 t~G~~----~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~  293 (357)
T 2e87_A          221 TPGLL----DRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA  293 (357)
T ss_dssp             CTTTS----SSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred             CCCcc----ccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence            12221    2456789999998876 55556777889999 999999999887777776652  45778887  8864

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=98.82  E-value=1.8e-09  Score=106.63  Aligned_cols=139  Identities=16%  Similarity=0.150  Sum_probs=87.3

Q ss_pred             EEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHH
Q 024529           78 GIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAH  157 (266)
Q Consensus        78 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (266)
                      .+..|+.+.|+||+||||||++.++++...+..|    .+ ..+.++..        ........           ...+
T Consensus       105 ~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~----~g-~~ilvl~P--------~r~La~q~-----------~~~l  160 (773)
T 2xau_A          105 LYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHL----EN-TQVACTQP--------RRVAAMSV-----------AQRV  160 (773)
T ss_dssp             HHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGG----GT-CEEEEEES--------CHHHHHHH-----------HHHH
T ss_pred             HHhCCCeEEEECCCCCCHHHHHHHHHHHhccccC----CC-ceEEecCc--------hHHHHHHH-----------HHHH
Confidence            3567899999999999999999998765444332    01 01122111        00000000           0011


Q ss_pred             HHhcCCC------------c-ccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHHHHHHHHHHhhc--C
Q 024529          158 LGSFGVT------------G-NLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN-HLDLDAVEALIQGLVLF--Q  221 (266)
Q Consensus       158 l~~~~l~------------~-~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~-~LD~~~~~~l~~~l~~~--~  221 (266)
                      .+.++..            . ...+..+..+|.|+.+|..+++.++.+++++|+|||.. +||......++..+...  +
T Consensus       161 ~~~~~~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~  240 (773)
T 2xau_A          161 AEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPD  240 (773)
T ss_dssp             HHHTTCCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHhCCchhheecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCC
Confidence            1111110            0 01123456789999999999999999999999999996 99987766666655443  2


Q ss_pred             -CEEEE-EecCHHHHHhhcCE
Q 024529          222 -GGILM-VSHDEHLISGSVEE  240 (266)
Q Consensus       222 -~tiii-vtHd~~~~~~~~d~  240 (266)
                       .+|++ +||+.+.+..+++.
T Consensus       241 ~~iIl~SAT~~~~~l~~~~~~  261 (773)
T 2xau_A          241 LKIIIMSATLDAEKFQRYFND  261 (773)
T ss_dssp             CEEEEEESCSCCHHHHHHTTS
T ss_pred             ceEEEEeccccHHHHHHHhcC
Confidence             35666 49998888777764

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=98.77  E-value=7.2e-09  Score=96.82  Aligned_cols=114  Identities=20%  Similarity=0.302  Sum_probs=72.5

Q ss_pred             CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCC
Q 024529           69 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPG  148 (266)
Q Consensus        69 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~  148 (266)
                      ...++++++.+++|  +.|+||+|+|||||+++|++.....           +.++.-..+  .               .
T Consensus        38 ~~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~~-----------f~~is~~~~--~---------------~   87 (476)
T 2ce7_A           38 PSKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANVP-----------FFHISGSDF--V---------------E   87 (476)
T ss_dssp             THHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTCC-----------EEEEEGGGT--T---------------T
T ss_pred             hHHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCCC-----------eeeCCHHHH--H---------------H
Confidence            34677888888888  8899999999999999999843110           001100000  0               0


Q ss_pred             CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCC----------CCCCHHHHH---HHHH
Q 024529          149 VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS----------NHLDLDAVE---ALIQ  215 (266)
Q Consensus       149 ~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt----------~~LD~~~~~---~l~~  215 (266)
                                           ..+  =+|++++|-.+++|....|.+|++||+.          ++.|.....   .++.
T Consensus        88 ---------------------~~~--g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~  144 (476)
T 2ce7_A           88 ---------------------LFV--GVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLV  144 (476)
T ss_dssp             ---------------------CCT--THHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHH
T ss_pred             ---------------------HHh--cccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHH
Confidence                                 000  0267888999999999999999999993          355654433   3444


Q ss_pred             HHhhc----CCEEEEEecCHHHHH
Q 024529          216 GLVLF----QGGILMVSHDEHLIS  235 (266)
Q Consensus       216 ~l~~~----~~tiiivtHd~~~~~  235 (266)
                      .+..+    +..||.+||+.+.+.
T Consensus       145 ~ld~~~~~~~viVIaaTn~~~~Ld  168 (476)
T 2ce7_A          145 EMDGFDSKEGIIVMAATNRPDILD  168 (476)
T ss_dssp             HHHHSCGGGTEEEEEEESCGGGSC
T ss_pred             HHhccCCCCCEEEEEecCChhhhc
Confidence            44322    336889999986553

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.76  E-value=4e-09  Score=86.86  Aligned_cols=35  Identities=29%  Similarity=0.395  Sum_probs=29.9

Q ss_pred             EEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCce
Q 024529           77 FGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG  111 (266)
Q Consensus        77 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G  111 (266)
                      ++|.+|++++|+||||||||||+++|++++.|+.|
T Consensus         1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~   35 (207)
T 2j41_A            1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK   35 (207)
T ss_dssp             ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence            46889999999999999999999999999877665

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.69  E-value=6.1e-10  Score=92.04  Aligned_cols=53  Identities=17%  Similarity=0.124  Sum_probs=39.7

Q ss_pred             EeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEE
Q 024529           59 SDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV  113 (266)
Q Consensus        59 ~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i  113 (266)
                      +|++..+ +.....+..++..++|++++|+||||||||||+++|++.+. ..|.+
T Consensus         3 ~~~~~~~-~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~   55 (200)
T 3uie_A            3 TNIKWHE-CSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKL   55 (200)
T ss_dssp             --------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCC
T ss_pred             CCCcccc-cccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCce
Confidence            4566655 34456688888889999999999999999999999999886 66766

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=98.67  E-value=5.9e-08  Score=87.73  Aligned_cols=133  Identities=15%  Similarity=0.144  Sum_probs=75.1

Q ss_pred             CCcE-EEEECCCCchHHHHHHHHhCCCC-----------CCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHH---HH-
Q 024529           81 LDSR-IAMVGPNGIGKSTILKLIAGELQ-----------PSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYM---MR-  144 (266)
Q Consensus        81 ~Ge~-~~l~G~nGsGKSTLl~~l~Gl~~-----------p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~---~~-  144 (266)
                      .|-. ++|+|++|||||||++.|+|...           |+.|.|.+.+. .+.+. ..+-............+   .. 
T Consensus       177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~-~v~l~-DT~G~i~~lp~~lve~f~~tl~~  254 (364)
T 2qtf_A          177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNR-KIMLV-DTVGFIRGIPPQIVDAFFVTLSE  254 (364)
T ss_dssp             --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTE-EEEEE-ECCCBCSSCCGGGHHHHHHHHHG
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCE-EEEEE-eCCCchhcCCHHHHHHHHHHHHH
Confidence            3444 99999999999999999999875           56678877663 22221 11100000011111111   00 


Q ss_pred             --h---------CCCCc---HH---HHHHHHHhcCCCccc---ccCCCCCCChHHHHHHHHH----HHH-ccCCCEEEEe
Q 024529          145 --C---------FPGVP---EQ---KLRAHLGSFGVTGNL---ALQPMYTLSGGQKSRVAFA----KIT-FKKPHIILLD  199 (266)
Q Consensus       145 --~---------~~~~~---~~---~~~~~l~~~~l~~~~---~~~~~~~LSgGqkqRv~lA----ral-~~~p~lllLD  199 (266)
                        .         .....   .+   .+.++++.+++.+..   ...++..+|+|+++++.++    +.+ ..+|++    
T Consensus       255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----  330 (364)
T 2qtf_A          255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----  330 (364)
T ss_dssp             GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----
T ss_pred             HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----
Confidence              0         01111   11   234566666653211   1234567898988888877    665 444454    


Q ss_pred             CCCCCCCHHHHHHHHHHHhh
Q 024529          200 EPSNHLDLDAVEALIQGLVL  219 (266)
Q Consensus       200 EPt~~LD~~~~~~l~~~l~~  219 (266)
                      +|+|++|..+...+++.+.+
T Consensus       331 ~~~SA~~g~gi~~L~~~I~~  350 (364)
T 2qtf_A          331 IPISALKRTNLELLRDKIYQ  350 (364)
T ss_dssp             EECBTTTTBSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHH
Confidence            89999999988888877754

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=98.66  E-value=1.4e-07  Score=84.68  Aligned_cols=126  Identities=16%  Similarity=0.189  Sum_probs=73.1

Q ss_pred             CCc--EEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHH
Q 024529           81 LDS--RIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHL  158 (266)
Q Consensus        81 ~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  158 (266)
                      .+.  .+.|.||+|+|||||++.+++...+..+       ..+.++....      ..+..            .-+..++
T Consensus        41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~-------~~~~~i~~~~------~~~~~------------~~~~~l~   95 (389)
T 1fnn_A           41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTT-------ARFVYINGFI------YRNFT------------AIIGEIA   95 (389)
T ss_dssp             TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCC-------CEEEEEETTT------CCSHH------------HHHHHHH
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcC-------eeEEEEeCcc------CCCHH------------HHHHHHH
Confidence            446  8999999999999999999998766531       1112222110      01111            1122334


Q ss_pred             HhcCCCcccccCCCCCCChHHHHHHHHHHHH-ccCCCEEEEeCCCCCCCHHHHHHHHHHHhh------cCCEEEEEecCH
Q 024529          159 GSFGVTGNLALQPMYTLSGGQKSRVAFAKIT-FKKPHIILLDEPSNHLDLDAVEALIQGLVL------FQGGILMVSHDE  231 (266)
Q Consensus       159 ~~~~l~~~~~~~~~~~LSgGqkqRv~lAral-~~~p~lllLDEPt~~LD~~~~~~l~~~l~~------~~~tiiivtHd~  231 (266)
                      ..++..     .+....+.++.........- ..+|.+|++||+... |......+...+.+      .+.++|++||+.
T Consensus        96 ~~l~~~-----~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~  169 (389)
T 1fnn_A           96 RSLNIP-----FPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHND  169 (389)
T ss_dssp             HHTTCC-----CCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred             HHhCcc-----CCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence            444432     11123444443322211111 245889999999876 88888888777643      245789999998


Q ss_pred             HHHHhh
Q 024529          232 HLISGS  237 (266)
Q Consensus       232 ~~~~~~  237 (266)
                      ++...+
T Consensus       170 ~~~~~l  175 (389)
T 1fnn_A          170 AVLNNL  175 (389)
T ss_dssp             HHHHTS
T ss_pred             hHHHHh
Confidence            765443

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.61  E-value=1.1e-08  Score=83.17  Aligned_cols=34  Identities=12%  Similarity=0.304  Sum_probs=29.0

Q ss_pred             CCcEEEEECCCCchHHHHHHHHhCCCCC-CceEEE
Q 024529           81 LDSRIAMVGPNGIGKSTILKLIAGELQP-SSGTVF  114 (266)
Q Consensus        81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~  114 (266)
                      +|++++|+||||||||||+++|++.+++ ..|.|.
T Consensus         4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~   38 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIP   38 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeee
Confidence            6899999999999999999999998764 445543

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.58  E-value=2.2e-08  Score=82.51  Aligned_cols=38  Identities=34%  Similarity=0.373  Sum_probs=24.6

Q ss_pred             CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCC
Q 024529           69 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        69 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      ...++|+||++.+|.+++|+|++||||||+.+.|++.+
T Consensus        12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            45789999999999999999999999999999999754

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=98.56  E-value=1.3e-07  Score=84.47  Aligned_cols=128  Identities=15%  Similarity=0.179  Sum_probs=78.2

Q ss_pred             ceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCc
Q 024529           71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVP  150 (266)
Q Consensus        71 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~  150 (266)
                      -|+.+.--+.+|+++.|.|++|+|||||+.-++.......+.        +.|+.-        ........        
T Consensus        35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~--------Vl~fSl--------Ems~~ql~--------   90 (338)
T 4a1f_A           35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRG--------VAVFSL--------EMSAEQLA--------   90 (338)
T ss_dssp             HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCE--------EEEEES--------SSCHHHHH--------
T ss_pred             HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCe--------EEEEeC--------CCCHHHHH--------
Confidence            355555568899999999999999999998887643322222        223221        11111111        


Q ss_pred             HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHh-hc-CCEEEEEe
Q 024529          151 EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV-LF-QGGILMVS  228 (266)
Q Consensus       151 ~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~-~~-~~tiiivt  228 (266)
                       .++......+.+.. +.   -+.||.++.+|+..|...+.++++++.|+|...  +......+..++ +. +..+|||.
T Consensus        91 -~Rlls~~~~v~~~~-l~---~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s--i~~i~~~ir~l~~~~gg~~lIVID  163 (338)
T 4a1f_A           91 -LRALSDLTSINMHD-LE---SGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR--IEQIRLQLRKLKSQHKELGIAFID  163 (338)
T ss_dssp             -HHHHHHHHCCCHHH-HH---HTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC--HHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred             -HHHHHHhhCCCHHH-Hh---cCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc--HHHHHHHHHHHHHhcCCCCEEEEe
Confidence             11112222222221 11   147999999999999999999999999998654  444444444444 33 44667665


Q ss_pred             c
Q 024529          229 H  229 (266)
Q Consensus       229 H  229 (266)
                      |
T Consensus       164 y  164 (338)
T 4a1f_A          164 Y  164 (338)
T ss_dssp             E
T ss_pred             c
Confidence            3

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.55  E-value=2e-08  Score=82.86  Aligned_cols=38  Identities=29%  Similarity=0.393  Sum_probs=29.1

Q ss_pred             eEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcC
Q 024529           76 NFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA  117 (266)
Q Consensus        76 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~  117 (266)
                      .++.++|++++|+||||||||||+++|+|.+    |.+.+++
T Consensus        23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~   60 (200)
T 4eun_A           23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEA   60 (200)
T ss_dssp             -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEG
T ss_pred             hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcc
Confidence            4667789999999999999999999999976    6666543

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=98.55  E-value=1.7e-07  Score=84.35  Aligned_cols=42  Identities=36%  Similarity=0.411  Sum_probs=32.9

Q ss_pred             cceeeceEEEeCCcEEEEECCCCchHHHHHHHHhC--CCCCCceEEE
Q 024529           70 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG--ELQPSSGTVF  114 (266)
Q Consensus        70 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G--l~~p~~G~i~  114 (266)
                      .+|++++++++   .++|+|++|||||||++.|+|  ++++.+|.+.
T Consensus        25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT   68 (360)
T 3t34_A           25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT   68 (360)
T ss_dssp             CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCC
T ss_pred             cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCccc
Confidence            47899999998   899999999999999999999  5677777664

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.53  E-value=1.3e-08  Score=87.36  Aligned_cols=35  Identities=31%  Similarity=0.516  Sum_probs=33.5

Q ss_pred             eCCcEEEEECCCCchHHHHHHHHh---CCCCCCceEEE
Q 024529           80 DLDSRIAMVGPNGIGKSTILKLIA---GELQPSSGTVF  114 (266)
Q Consensus        80 ~~Ge~~~l~G~nGsGKSTLl~~l~---Gl~~p~~G~i~  114 (266)
                      .+|++++|+|||||||||++++|+   |+..|++|.++
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~   62 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY   62 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence            689999999999999999999999   99999999987

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=98.51  E-value=3.1e-08  Score=91.31  Aligned_cols=49  Identities=29%  Similarity=0.461  Sum_probs=37.9

Q ss_pred             EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCce
Q 024529           56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG  111 (266)
Q Consensus        56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G  111 (266)
                      |+++|+ ++|+ +.   .  .+++.+|++++|+|||||||||||++|+++..|.++
T Consensus         7 l~~~~~-~~~~-~~---~--~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~~   55 (430)
T 1w1w_A            7 LELSNF-KSYR-GV---T--KVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSN   55 (430)
T ss_dssp             EEEESC-SSCC-SE---E--EEECTTCSEEEEECSTTSSHHHHHHHHHHHTTC---
T ss_pred             EEEeCE-EEEC-Cc---e--eEEecCCCEEEEECCCCCCHHHHHHHHHhhhccccc
Confidence            778888 6773 21   2  355778999999999999999999999999888653

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=98.48  E-value=1.8e-06  Score=77.69  Aligned_cols=36  Identities=22%  Similarity=0.303  Sum_probs=31.4

Q ss_pred             EEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEE
Q 024529           78 GIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV  113 (266)
Q Consensus        78 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i  113 (266)
                      -+++|+++.|.||+|||||||+..++....+..|.+
T Consensus        57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~V   92 (356)
T 3hr8_A           57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVA   92 (356)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeE
Confidence            378999999999999999999999998877666654

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=98.47  E-value=3.4e-09  Score=90.53  Aligned_cols=57  Identities=23%  Similarity=0.360  Sum_probs=46.8

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEc
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS  116 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~  116 (266)
                      ..+++++.+.|. ...+++++++++++|  ++|+||||||||||+++|++...  .|.+.+.
T Consensus        25 ~~~l~~l~~~~~-~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~   81 (254)
T 1ixz_A           25 KEELKEIVEFLK-NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITAS   81 (254)
T ss_dssp             HHHHHHHHHHHH-CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEE
T ss_pred             HHHHHHHHHHHH-CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEee
Confidence            356677877773 446889999999999  99999999999999999999875  5666544

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=98.46  E-value=4.2e-09  Score=93.67  Aligned_cols=135  Identities=19%  Similarity=0.145  Sum_probs=76.3

Q ss_pred             EeeEEEcCCCCcceeeceEEEeCCc------EEEEECCCCchHHHHHHHHhCCCC--CCceEEEEcCeeeEEEEeccccC
Q 024529           59 SDASFGYPGGPILFKNLNFGIDLDS------RIAMVGPNGIGKSTILKLIAGELQ--PSSGTVFRSAKVRIAVFSQHHVD  130 (266)
Q Consensus        59 ~~l~~~y~~~~~~l~~vsl~i~~Ge------~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~~~~~i~~~~q~~~~  130 (266)
                      +.+++.| ++...+++++..+..+.      ++||+||||||||||+++|++++.  |++|.+        +++.++.+.
T Consensus        64 rll~~~~-~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v--------~~i~~D~f~  134 (321)
T 3tqc_A           64 RLLSFYV-TARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNV--------EVITTDGFL  134 (321)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCE--------EEEEGGGGB
T ss_pred             HHHHHhh-cchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeE--------EEEeecccc
Confidence            3445556 34457888888888777      999999999999999999999987  455543        344444321


Q ss_pred             CCCCCCcHHHHH--HHh--CC-CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCC
Q 024529          131 GLDLSSNPLLYM--MRC--FP-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHL  205 (266)
Q Consensus       131 ~~~~~~~~~~~~--~~~--~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~L  205 (266)
                         .........  ...  .+ ..+.....+.+..+.-.......|  .+|.+..+|+.-+...+..|+|+|++.|..-.
T Consensus       135 ---~~~~~l~~~~~~~~~g~P~~~D~~~l~~~L~~L~~g~~~v~~P--~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~  209 (321)
T 3tqc_A          135 ---YSNAKLEKQGLMKRKGFPESYDMPSLLRVLNAIKSGQRNVRIP--VYSHHYYDIVRGQYEIVDQPDIVILEGLNILQ  209 (321)
T ss_dssp             ---CCHHHHHHTTCGGGTTSGGGBCHHHHHHHHHHHHTTCSSEEEE--EEETTTTEEEEEEEEEECSCSEEEEECTTTTC
T ss_pred             ---cchhhhhhHHHHhhccCcccccHHHHHHHHHhhhccccccccc--hhhhhccccccCceeeccCCCEEEEEcccccc
Confidence               111111110  000  01 122334444444432211011123  23333334443233456789999999998877


Q ss_pred             CH
Q 024529          206 DL  207 (266)
Q Consensus       206 D~  207 (266)
                      |.
T Consensus       210 ~~  211 (321)
T 3tqc_A          210 TG  211 (321)
T ss_dssp             CC
T ss_pred             cc
Confidence            65

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.44  E-value=8.4e-08  Score=79.68  Aligned_cols=29  Identities=24%  Similarity=0.489  Sum_probs=27.4

Q ss_pred             eCCcEEEEECCCCchHHHHHHHHhCCCCC
Q 024529           80 DLDSRIAMVGPNGIGKSTILKLIAGELQP  108 (266)
Q Consensus        80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p  108 (266)
                      ++|++++|+||||||||||++.|++.+++
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~   34 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPET   34 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence            57999999999999999999999999876

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=98.44  E-value=5.5e-09  Score=90.62  Aligned_cols=56  Identities=23%  Similarity=0.379  Sum_probs=46.2

Q ss_pred             EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEc
Q 024529           56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS  116 (266)
Q Consensus        56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~  116 (266)
                      .+++++.+.|. ...+++++++++++|  ++|+||||||||||+++|++...  .|.|.+.
T Consensus        50 ~~l~~l~~~~~-~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~  105 (278)
T 1iy2_A           50 EELKEIVEFLK-NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITAS  105 (278)
T ss_dssp             HHHHHHHHHHH-CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEE
T ss_pred             HHHHHHHHHHH-CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEec
Confidence            45677777773 456889999999999  99999999999999999999875  6666654

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=98.42  E-value=1.2e-07  Score=84.65  Aligned_cols=127  Identities=20%  Similarity=0.259  Sum_probs=66.7

Q ss_pred             eCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHH
Q 024529           80 DLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLG  159 (266)
Q Consensus        80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  159 (266)
                      ..+..+.|.||+|+|||||++.+++...+..|.     ...+.++.....      ...            ......++.
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~-----~~~~~~i~~~~~------~~~------------~~~~~~i~~   99 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLG-----KFKHVYINTRQI------DTP------------YRVLADLLE   99 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCS-----SCEEEEEEHHHH------CSH------------HHHHHHHTT
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcC-----CceEEEEECCCC------CCH------------HHHHHHHHH
Confidence            457899999999999999999999876543221     001112211100      011            111223333


Q ss_pred             hcCCCcccccCCCCCCChHHHHHHHHHHHH--ccCCCEEEEeCCCCCCC---HHHHHHHHHHHhh---cCCEEEEEecCH
Q 024529          160 SFGVTGNLALQPMYTLSGGQKSRVAFAKIT--FKKPHIILLDEPSNHLD---LDAVEALIQGLVL---FQGGILMVSHDE  231 (266)
Q Consensus       160 ~~~l~~~~~~~~~~~LSgGqkqRv~lAral--~~~p~lllLDEPt~~LD---~~~~~~l~~~l~~---~~~tiiivtHd~  231 (266)
                      .++...     +....+..+.... +..++  ...|.+|++||+....+   ......+.+.+..   .+.++|++||+.
T Consensus       100 ~l~~~~-----~~~~~~~~~~~~~-l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~  173 (386)
T 2qby_A          100 SLDVKV-----PFTGLSIAELYRR-LVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDV  173 (386)
T ss_dssp             TTSCCC-----CSSSCCHHHHHHH-HHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCG
T ss_pred             HhCCCC-----CCCCCCHHHHHHH-HHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCC
Confidence            333321     1123344442221 22222  23388999999987652   3344455555532   234789999988


Q ss_pred             HHHH
Q 024529          232 HLIS  235 (266)
Q Consensus       232 ~~~~  235 (266)
                      .+..
T Consensus       174 ~~~~  177 (386)
T 2qby_A          174 KFVD  177 (386)
T ss_dssp             GGGG
T ss_pred             ChHh
Confidence            6543

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=98.41  E-value=7e-08  Score=81.41  Aligned_cols=37  Identities=16%  Similarity=0.071  Sum_probs=31.0

Q ss_pred             eEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEc
Q 024529           76 NFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS  116 (266)
Q Consensus        76 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~  116 (266)
                      +.+.++|++++|.|+||||||||+++|+|+    .|+|.+.
T Consensus        14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~   50 (230)
T 2vp4_A           14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLL   50 (230)
T ss_dssp             BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEE
T ss_pred             cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEE
Confidence            334578999999999999999999999997    5766543

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.40  E-value=5.1e-08  Score=80.50  Aligned_cols=37  Identities=16%  Similarity=0.148  Sum_probs=33.1

Q ss_pred             EeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEE
Q 024529           79 IDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR  115 (266)
Q Consensus        79 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~  115 (266)
                      .++|++++|+|+||||||||+++|++.+++..|.|..
T Consensus        19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~   55 (201)
T 1rz3_A           19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCV   55 (201)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEE
Confidence            5689999999999999999999999998888887753

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=98.38  E-value=9.9e-07  Score=78.25  Aligned_cols=148  Identities=11%  Similarity=0.162  Sum_probs=74.7

Q ss_pred             EEeCCcEEEEECCCCchHHHHHHHHhCC-CCCC-ceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHH
Q 024529           78 GIDLDSRIAMVGPNGIGKSTILKLIAGE-LQPS-SGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLR  155 (266)
Q Consensus        78 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-~~p~-~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (266)
                      -+++|+++.|.||+|||||||+..++.. ..|. .|-    ....+.|+.-+.    .+....+....... +.+.+.  
T Consensus       103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg----~~~~vlyi~~e~----~~~~~~l~~~~~~~-g~~~~~--  171 (324)
T 2z43_A          103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGG----LSGKAVYIDTEG----TFRWERIENMAKAL-GLDIDN--  171 (324)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTC----CSCEEEEEESSS----CCCHHHHHHHHHHT-TCCHHH--
T ss_pred             CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCC----CCCeEEEEECCC----CCCHHHHHHHHHHh-CCCHHH--
Confidence            5889999999999999999999988764 2331 110    001223332221    01111111111111 122211  


Q ss_pred             HHHHhcCCCcccccCCCCCCChH-HHHHHHHHHHHc---cCCCEEEEeCCCCCCCH--------HH----HHHHHHHH--
Q 024529          156 AHLGSFGVTGNLALQPMYTLSGG-QKSRVAFAKITF---KKPHIILLDEPSNHLDL--------DA----VEALIQGL--  217 (266)
Q Consensus       156 ~~l~~~~l~~~~~~~~~~~LSgG-qkqRv~lAral~---~~p~lllLDEPt~~LD~--------~~----~~~l~~~l--  217 (266)
                       +++.+-+        ....+.. +.+.+..++.++   .+|+++++|+.++-...        ..    ..+++..|  
T Consensus       172 -~~~~l~~--------~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~  242 (324)
T 2z43_A          172 -VMNNIYY--------IRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTR  242 (324)
T ss_dssp             -HHHTEEE--------EECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHH
T ss_pred             -HhccEEE--------EeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHH
Confidence             2222111        1122333 235566677776   67999999999986532        11    12333333  


Q ss_pred             --hhcCCEEEEEecCHHH----------------HHhhcCEEEEEe
Q 024529          218 --VLFQGGILMVSHDEHL----------------ISGSVEELWVVS  245 (266)
Q Consensus       218 --~~~~~tiiivtHd~~~----------------~~~~~d~i~~l~  245 (266)
                        ++++.+||++.|-...                +...+|.++.|.
T Consensus       243 la~~~~~~Vi~~nq~~~~~~~~~~~~~~~~gg~~l~~~~d~~l~l~  288 (324)
T 2z43_A          243 LAEVYDIAVIITNQVMARPDMFYGDPTVAVGGHTLYHVPGIRIQLK  288 (324)
T ss_dssp             HHHHHTCEEEEEEEC------------------------CEEEEEE
T ss_pred             HHHHhCCEEEEEcceeecCCCcCCCCCCCCchHHHHhhCcEEEEEE
Confidence              3457789999885432                334567777775

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.38  E-value=1e-07  Score=78.89  Aligned_cols=32  Identities=19%  Similarity=0.401  Sum_probs=26.7

Q ss_pred             eEEEeCCcEEEEECCCCchHHHHHHHHhCCCC
Q 024529           76 NFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ  107 (266)
Q Consensus        76 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~  107 (266)
                      |+...+|++++|+||||||||||++.|++.++
T Consensus        13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            34445899999999999999999999999865

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=98.37  E-value=4.9e-08  Score=94.88  Aligned_cols=133  Identities=14%  Similarity=0.077  Sum_probs=70.4

Q ss_pred             eEEEeCCcEEEEECCCCchHHHHHHHHhCCCCC--CceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHH
Q 024529           76 NFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP--SSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQK  153 (266)
Q Consensus        76 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (266)
                      ++++++|..++|+|+||+|||||++.|++...+  ..|+| .++.         ..  .+  ..... ..... ......
T Consensus         3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~---------~~--~d--~~~~e-~~~gi-ti~~~~   66 (665)
T 2dy1_A            3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGT---------TT--TD--YTPEA-KLHRT-TVRTGV   66 (665)
T ss_dssp             ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTC---------CS--SC--CSHHH-HHTTS-CCSCEE
T ss_pred             CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCc---------cc--cc--CCHHH-HhcCC-eEEecc
Confidence            466788999999999999999999999976554  55655 2211         00  00  01110 00000 000000


Q ss_pred             HHHHHHhcCCCcccccCCCC-CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHH
Q 024529          154 LRAHLGSFGVTGNLALQPMY-TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEH  232 (266)
Q Consensus       154 ~~~~l~~~~l~~~~~~~~~~-~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~  232 (266)
                      .  .+..-+....+.+.+.. .++     ......+-..+.-++++| |++++++.+.. +++.+...+..+|++.|.++
T Consensus        67 ~--~~~~~~~~~nliDTpG~~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~-~~~~~~~~~ip~ilv~NKiD  137 (665)
T 2dy1_A           67 A--PLLFRGHRVFLLDAPGYGDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTER-AWTVAERLGLPRMVVVTKLD  137 (665)
T ss_dssp             E--EEEETTEEEEEEECCCSGGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHHH-HHHHHHHTTCCEEEEEECGG
T ss_pred             e--EEeeCCEEEEEEeCCCccchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHHH-HHHHHHHccCCEEEEecCCc
Confidence            0  00000011112222211 111     122233335688899999 99999998764 45555556778888899877


Q ss_pred             H
Q 024529          233 L  233 (266)
Q Consensus       233 ~  233 (266)
                      .
T Consensus       138 ~  138 (665)
T 2dy1_A          138 K  138 (665)
T ss_dssp             G
T ss_pred             h
Confidence            5

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=98.35  E-value=6.6e-08  Score=87.54  Aligned_cols=52  Identities=23%  Similarity=0.264  Sum_probs=47.5

Q ss_pred             cEEEEeeEEEcCCCCccee--------------eceEEEeCCcEEEEECCCCchHHHHHHHHhCCC
Q 024529           55 IISFSDASFGYPGGPILFK--------------NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~--------------~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      -+.++|+++.|+..+..++              |+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus       133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i  198 (422)
T 3ice_A          133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI  198 (422)
T ss_dssp             SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred             CceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence            3778999999987777888              899999999999999999999999999998864

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.34  E-value=5.9e-08  Score=86.24  Aligned_cols=44  Identities=25%  Similarity=0.240  Sum_probs=39.7

Q ss_pred             eeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEE
Q 024529           72 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR  115 (266)
Q Consensus        72 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~  115 (266)
                      +++++|++++|++++|+|+||+||||++..|++.+.+..|+|.+
T Consensus        95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVll  138 (320)
T 1zu4_A           95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLI  138 (320)
T ss_dssp             -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence            36889999999999999999999999999999999888888764

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=98.32  E-value=4.8e-09  Score=92.41  Aligned_cols=148  Identities=15%  Similarity=0.108  Sum_probs=71.0

Q ss_pred             CCcEEEEECCCCchHHHHHHHHhCCCC-CCceEEEEcCeeeEEEEeccccC--CCCCC-Cc--HHHHHHHhCCCCcHHHH
Q 024529           81 LDSRIAMVGPNGIGKSTILKLIAGELQ-PSSGTVFRSAKVRIAVFSQHHVD--GLDLS-SN--PLLYMMRCFPGVPEQKL  154 (266)
Q Consensus        81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~~~~~i~~~~q~~~~--~~~~~-~~--~~~~~~~~~~~~~~~~~  154 (266)
                      ++.+++|+|++|+|||||++.|.|... +.++..........+++.+....  ..+.. ..  ....+...+..    .+
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~----~~   82 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNK----AA   82 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTC----CT
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHH----HH
Confidence            344899999999999999999999732 11111000011224444443210  01110 00  00000000000    00


Q ss_pred             HHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHc--cCCCEEEEeCCCCCCCHHH-HHHH---HHHHhh-cCC--EEE
Q 024529          155 RAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF--KKPHIILLDEPSNHLDLDA-VEAL---IQGLVL-FQG--GIL  225 (266)
Q Consensus       155 ~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~--~~p~lllLDEPt~~LD~~~-~~~l---~~~l~~-~~~--tii  225 (266)
                      ...+..+++.-...+.  ..+|+|++   .+++.+.  ..|.++++    |.+|... ...+   ++.+.+ ++.  .+.
T Consensus        83 ~~~l~~~D~vl~Vvd~--~~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~  153 (301)
T 1ega_A           83 SSSIGDVELVIFVVEG--TRWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVP  153 (301)
T ss_dssp             TSCCCCEEEEEEEEET--TCCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEE
T ss_pred             HHHHhcCCEEEEEEeC--CCCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEE
Confidence            0111111111111121  23899886   5566665  67889988    7888754 3333   333433 333  456


Q ss_pred             EEecCHHHHHhhcCEE
Q 024529          226 MVSHDEHLISGSVEEL  241 (266)
Q Consensus       226 ivtHd~~~~~~~~d~i  241 (266)
                      +++|+-+-+..++|.+
T Consensus       154 iSA~~g~~v~~l~~~i  169 (301)
T 1ega_A          154 ISAETGLNVDTIAAIV  169 (301)
T ss_dssp             CCTTTTTTHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHH
Confidence            6777766666655544

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.31  E-value=1.5e-06  Score=80.21  Aligned_cols=109  Identities=17%  Similarity=0.087  Sum_probs=63.4

Q ss_pred             CCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHh
Q 024529           81 LDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGS  160 (266)
Q Consensus        81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  160 (266)
                      ++.+++++|||||||||++..|++.+.+..+.|.+        +..+.      .. +.          ..+....+.+.
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVll--------v~~D~------~r-~~----------a~eqL~~~~~~  150 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGL--------VAADV------YR-PA----------AYDQLLQLGNQ  150 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEE--------EEECC------SC-HH----------HHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE--------EecCc------cc-hh----------HHHHHHHHHHh
Confidence            57899999999999999999999988877666642        21111      10 00          01222333344


Q ss_pred             cCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCC-CC--CCHHHHHHHHHHH
Q 024529          161 FGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS-NH--LDLDAVEALIQGL  217 (266)
Q Consensus       161 ~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt-~~--LD~~~~~~l~~~l  217 (266)
                      .+++-..   .....+.-.-.+-+++.+...+++++|+|+|- .+  .|+....++...+
T Consensus       151 ~gv~~~~---~~~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~  207 (433)
T 3kl4_A          151 IGVQVYG---EPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMY  207 (433)
T ss_dssp             TTCCEEC---CTTCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHH
T ss_pred             cCCceee---ccccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHH
Confidence            4543211   11112222223345666666788999999887 44  6776655555443

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=98.31  E-value=8.3e-07  Score=81.68  Aligned_cols=53  Identities=15%  Similarity=0.072  Sum_probs=44.0

Q ss_pred             EEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEE
Q 024529           58 FSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR  115 (266)
Q Consensus        58 ~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~  115 (266)
                      .+++++.|++. .  ++++|+  +|++++++|+|||||||++..|++.+.+..|.|.+
T Consensus        79 ~~~L~~~~~~~-~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vll  131 (425)
T 2ffh_A           79 YEALKEALGGE-A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLL  131 (425)
T ss_dssp             HHHHHHHTTSS-C--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred             HHHHHHHhCCC-c--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence            45677778433 2  678888  89999999999999999999999999988887764

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=98.30  E-value=1.6e-06  Score=77.68  Aligned_cols=28  Identities=18%  Similarity=0.220  Sum_probs=25.7

Q ss_pred             EEeCCcEEEEECCCCchHHHHHHHHhCC
Q 024529           78 GIDLDSRIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        78 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      -+++|+++.|.||+|||||||+..++..
T Consensus       118 Gl~~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          118 GIESMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999999998874

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.29  E-value=1.2e-07  Score=89.99  Aligned_cols=40  Identities=25%  Similarity=0.303  Sum_probs=35.4

Q ss_pred             EEeCCcEEEEECCCCchHHHHHHHHhCCCCCCce-EEE-EcC
Q 024529           78 GIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG-TVF-RSA  117 (266)
Q Consensus        78 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G-~i~-~~~  117 (266)
                      .+.+|++++|+|+||||||||+++|+|.+.|++| .+. +++
T Consensus       365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDg  406 (552)
T 3cr8_A          365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDG  406 (552)
T ss_dssp             GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESS
T ss_pred             ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECC
Confidence            5779999999999999999999999999999887 664 554

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=98.28  E-value=8.7e-07  Score=78.37  Aligned_cols=131  Identities=11%  Similarity=0.155  Sum_probs=74.5

Q ss_pred             cceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCC
Q 024529           70 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGV  149 (266)
Q Consensus        70 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~  149 (266)
                      .-|+.+.--+.+|+++.|.|++|+|||||+..++....- .|       ..+.|+.-+        .......       
T Consensus        56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g-------~~vl~~slE--------~s~~~l~-------  112 (315)
T 3bh0_A           56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND-------DVVNLHSLE--------MGKKENI-------  112 (315)
T ss_dssp             HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT-------CEEEEEESS--------SCHHHHH-------
T ss_pred             HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC-------CeEEEEECC--------CCHHHHH-------
Confidence            346776656899999999999999999998887643211 12       122333211        1111110       


Q ss_pred             cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHh-hcCCE--EEE
Q 024529          150 PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV-LFQGG--ILM  226 (266)
Q Consensus       150 ~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~-~~~~t--iii  226 (266)
                        .++......+.+.. +.... ..||.++.+|+..|...+.++++++.|+|.  +++......+..+. +.+..  +|+
T Consensus       113 --~R~~~~~~~i~~~~-l~~~~-~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~--~~~~~i~~~i~~l~~~~~~~~~lVV  186 (315)
T 3bh0_A          113 --KRLIVTAGSINAQK-IKAAR-RDFASEDWGKLSMAIGEISNSNINIFDKAG--QSVNYIWSKTRQTKRKNPGKRVIVM  186 (315)
T ss_dssp             --HHHHHHHTTCCHHH-HHSCH-HHHCSSCHHHHHHHHHHHHTSCEEEECCSC--CBHHHHHHHHHHHHHTSSSCCEEEE
T ss_pred             --HHHHHHHcCCCHHH-HhcCC-CCCCHHHHHHHHHHHHHHhCCCEEEECCCC--CCHHHHHHHHHHHHHhcCCCCeEEE
Confidence              11111111222211 11100 128889999999888888888899988886  44444443334333 33445  777


Q ss_pred             Eec
Q 024529          227 VSH  229 (266)
Q Consensus       227 vtH  229 (266)
                      |.|
T Consensus       187 ID~  189 (315)
T 3bh0_A          187 IDY  189 (315)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            765

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=98.27  E-value=2.3e-07  Score=74.41  Aligned_cols=33  Identities=24%  Similarity=0.352  Sum_probs=27.6

Q ss_pred             eCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEc
Q 024529           80 DLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS  116 (266)
Q Consensus        80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~  116 (266)
                      .+|++++|+|+||||||||+++|++.+    |.+.++
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~   38 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLD   38 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEE
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEe
Confidence            468999999999999999999999864    555543

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=98.26  E-value=3.2e-07  Score=73.25  Aligned_cols=28  Identities=43%  Similarity=0.559  Sum_probs=25.1

Q ss_pred             CCcEEEEECCCCchHHHHHHHHhCCCCC
Q 024529           81 LDSRIAMVGPNGIGKSTILKLIAGELQP  108 (266)
Q Consensus        81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p  108 (266)
                      .|.+++|+||||||||||+++|++.+.+
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~   30 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM   30 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence            4789999999999999999999997653

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.25  E-value=8.8e-09  Score=92.29  Aligned_cols=58  Identities=19%  Similarity=0.112  Sum_probs=46.9

Q ss_pred             EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEE
Q 024529           56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF  114 (266)
Q Consensus        56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~  114 (266)
                      ++.+++.+.| +...+++++++.+.+|.+++|+|++|+|||||++.|++.+.+..|.+.
T Consensus        31 ie~~~~~~~~-~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~   88 (341)
T 2p67_A           31 VESRHPRHQA-LSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVA   88 (341)
T ss_dssp             HHCCCHHHHH-HHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred             hhcCCchhhh-HHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence            4444555555 334578899999999999999999999999999999998877777654

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=98.25  E-value=8.2e-06  Score=70.79  Aligned_cols=101  Identities=21%  Similarity=0.257  Sum_probs=63.8

Q ss_pred             CCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHh
Q 024529           81 LDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGS  160 (266)
Q Consensus        81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  160 (266)
                      ++..+.|.||+|+|||||++++++....   .+        ..+.-   .  .+                          
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~~~~---~~--------~~i~~---~--~l--------------------------   90 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATECSA---TF--------LNISA---A--SL--------------------------   90 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHTTC---EE--------EEEES---T--TT--------------------------
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHhCC---Ce--------EEeeH---H--HH--------------------------
Confidence            5678999999999999999999985421   10        00000   0  00                          


Q ss_pred             cCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCH----------HHHHHHHHHHhhcC-------CE
Q 024529          161 FGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL----------DAVEALIQGLVLFQ-------GG  223 (266)
Q Consensus       161 ~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~----------~~~~~l~~~l~~~~-------~t  223 (266)
                             ....  .-+++++.+..+..+...+|.+|++||+.+-++.          .....++..+....       ..
T Consensus        91 -------~~~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~  161 (297)
T 3b9p_A           91 -------TSKY--VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIV  161 (297)
T ss_dssp             -------SSSS--CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEE
T ss_pred             -------hhcc--cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEE
Confidence                   0000  1246777888888888889999999999876653          22334555554331       24


Q ss_pred             EEEEecCHH
Q 024529          224 ILMVSHDEH  232 (266)
Q Consensus       224 iiivtHd~~  232 (266)
                      ||.+|++.+
T Consensus       162 vi~~tn~~~  170 (297)
T 3b9p_A          162 VLAATNRPQ  170 (297)
T ss_dssp             EEEEESCGG
T ss_pred             EEeecCChh
Confidence            677888653

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=98.20  E-value=7.1e-07  Score=73.59  Aligned_cols=32  Identities=22%  Similarity=0.136  Sum_probs=28.3

Q ss_pred             eEEEeCCcEEEEECCCCchHHHHHHHHhCCCC
Q 024529           76 NFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ  107 (266)
Q Consensus        76 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~  107 (266)
                      --++++|.+++|+|++|||||||+++|++.++
T Consensus        15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~   46 (207)
T 2qt1_A           15 VPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP   46 (207)
T ss_dssp             CCCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred             cccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            34567899999999999999999999999864

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=98.20  E-value=7.1e-07  Score=70.35  Aligned_cols=30  Identities=27%  Similarity=0.374  Sum_probs=24.9

Q ss_pred             eeceEEEeCCcEEEEECCCCchHHHHHHHHh
Q 024529           73 KNLNFGIDLDSRIAMVGPNGIGKSTILKLIA  103 (266)
Q Consensus        73 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~  103 (266)
                      ++.++++.+| +.+|+|||||||||++.+|.
T Consensus        15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred             cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence            4455666654 99999999999999999986

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=98.13  E-value=1.6e-05  Score=66.91  Aligned_cols=29  Identities=45%  Similarity=0.542  Sum_probs=24.3

Q ss_pred             EEEEECCCCchHHHHHHHHhCCCCCCceE
Q 024529           84 RIAMVGPNGIGKSTILKLIAGELQPSSGT  112 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~  112 (266)
                      .++|+|++|+|||||++.|+|...+.++.
T Consensus        31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~   59 (239)
T 3lxx_A           31 RIVLVGKTGAGKSATGNSILGRKVFHSGT   59 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSCCSCC--
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCcCccCC
Confidence            58999999999999999999987766653

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=98.09  E-value=3.2e-07  Score=76.50  Aligned_cols=34  Identities=38%  Similarity=0.649  Sum_probs=28.6

Q ss_pred             CcEEEEECCCCchHHHHHHHHhCCC---CCCceEEEE
Q 024529           82 DSRIAMVGPNGIGKSTILKLIAGEL---QPSSGTVFR  115 (266)
Q Consensus        82 Ge~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~  115 (266)
                      +.+++|+||+||||||+.++|++.+   .++.|.+..
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~   41 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR   41 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence            5689999999999999999998765   567777653

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=98.06  E-value=1.2e-06  Score=73.99  Aligned_cols=42  Identities=24%  Similarity=0.383  Sum_probs=30.7

Q ss_pred             eeeceEEEe---CCcEEEEECCCCchHHHHHHHHhCCCCCCceEEE
Q 024529           72 FKNLNFGID---LDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF  114 (266)
Q Consensus        72 l~~vsl~i~---~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~  114 (266)
                      |.++||.+.   +|.+++|.|++||||||+++.|+..+.+ .+.+.
T Consensus        13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~   57 (229)
T 4eaq_A           13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVI   57 (229)
T ss_dssp             -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEE
T ss_pred             ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCce
Confidence            566777776   8999999999999999999999998877 55553

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.99  E-value=1.5e-06  Score=69.86  Aligned_cols=31  Identities=23%  Similarity=0.275  Sum_probs=26.7

Q ss_pred             eCCcEEEEECCCCchHHHHHHHHhCCCCCCce
Q 024529           80 DLDSRIAMVGPNGIGKSTILKLIAGELQPSSG  111 (266)
Q Consensus        80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G  111 (266)
                      .+|++++|+|++||||||+.++|++.+.+ .|
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g   33 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HG   33 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CC
Confidence            36899999999999999999999997655 44

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=97.98  E-value=1.2e-05  Score=74.41  Aligned_cols=40  Identities=20%  Similarity=0.205  Sum_probs=29.8

Q ss_pred             cCCCEEEEeCCCCCCCH-HHHHHHHHHHh---hcCCEEEEEecC
Q 024529          191 KKPHIILLDEPSNHLDL-DAVEALIQGLV---LFQGGILMVSHD  230 (266)
Q Consensus       191 ~~p~lllLDEPt~~LD~-~~~~~l~~~l~---~~~~tiiivtHd  230 (266)
                      .+|++|++||+..-.+. .....++..+.   +.+..||++||+
T Consensus       193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~  236 (440)
T 2z4s_A          193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR  236 (440)
T ss_dssp             TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence            48999999999877664 45566666554   345688999997

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.96  E-value=1.8e-06  Score=77.51  Aligned_cols=35  Identities=29%  Similarity=0.465  Sum_probs=30.2

Q ss_pred             eCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEE
Q 024529           80 DLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF  114 (266)
Q Consensus        80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~  114 (266)
                      +++.+++|+|++|||||||++.|+|.+.+..|.|.
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~  106 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLS  106 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEE
Confidence            35779999999999999999999998777777664

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=97.96  E-value=1.1e-06  Score=83.49  Aligned_cols=56  Identities=18%  Similarity=0.226  Sum_probs=44.9

Q ss_pred             EEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEE
Q 024529           58 FSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR  115 (266)
Q Consensus        58 ~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~  115 (266)
                      ++++.+.| ....++.++++++ +|+.++|+||||+|||||+++|++...+..|.|..
T Consensus        86 ~~~vk~~i-~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~  141 (543)
T 3m6a_A           86 LEKVKERI-LEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISL  141 (543)
T ss_dssp             CHHHHHHH-HHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECC
T ss_pred             HHHHHHHH-HHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEe
Confidence            45555555 2334678888888 89999999999999999999999999887777653

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=97.94  E-value=4.2e-06  Score=69.27  Aligned_cols=30  Identities=27%  Similarity=0.374  Sum_probs=24.6

Q ss_pred             eeceEEEeCCcEEEEECCCCchHHHHHHHHh
Q 024529           73 KNLNFGIDLDSRIAMVGPNGIGKSTILKLIA  103 (266)
Q Consensus        73 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~  103 (266)
                      .+.++++.+| +.+|+|||||||||++.+|.
T Consensus        15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred             cceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence            4456666654 99999999999999999884

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=97.93  E-value=1.9e-06  Score=70.53  Aligned_cols=42  Identities=19%  Similarity=0.407  Sum_probs=31.4

Q ss_pred             EEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhC
Q 024529           62 SFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        62 ~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      ++.|++-..+++++||..+++ .++|+|++|+|||||++.+.+
T Consensus         6 ~~~~~~~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A            6 DWIYSGFSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             -------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence            445665556889999988777 578999999999999999987

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=97.90  E-value=1.9e-06  Score=81.22  Aligned_cols=34  Identities=24%  Similarity=0.295  Sum_probs=31.0

Q ss_pred             ceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCC
Q 024529           71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        71 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .+++++|++.+| +.+|+|+|||||||||.+|..+
T Consensus        50 ~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l   83 (517)
T 4ad8_A           50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLL   83 (517)
T ss_dssp             TBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred             ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence            568899999999 9999999999999999999655

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=97.90  E-value=0.00014  Score=65.30  Aligned_cols=27  Identities=19%  Similarity=0.433  Sum_probs=24.5

Q ss_pred             EeCCcEEEEECCCCchHHHHHHHHhCC
Q 024529           79 IDLDSRIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        79 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      +++|+++.|.|++|||||||...++..
T Consensus        60 l~~G~ii~I~G~pGsGKTtLal~la~~   86 (356)
T 1u94_A           60 LPMGRIVEIYGPESSGKTTLTLQVIAA   86 (356)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999999887754

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.83  E-value=1.5e-06  Score=78.31  Aligned_cols=52  Identities=19%  Similarity=0.265  Sum_probs=36.5

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceE
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGT  112 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~  112 (266)
                      ..+.+.+++..|+ .+.++++++|.|      +|+|++|+|||||++.|.|...+..+.
T Consensus        16 ~~v~~~~l~~~~~-~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~   67 (361)
T 2qag_A           16 GYVGFANLPNQVH-RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV   67 (361)
T ss_dssp             -----CCHHHHHH-THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-----
T ss_pred             ceEEeccchHHhC-CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCc
Confidence            3588899998884 456788999877      999999999999999998875554443

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.82  E-value=3.7e-06  Score=69.65  Aligned_cols=39  Identities=18%  Similarity=0.101  Sum_probs=32.8

Q ss_pred             EEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCce--EEEE
Q 024529           77 FGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG--TVFR  115 (266)
Q Consensus        77 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G--~i~~  115 (266)
                      +.+.+|.+++|+|++||||||+.+.|++.+.|..|  .+.+
T Consensus        20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~   60 (211)
T 1m7g_A           20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRL   60 (211)
T ss_dssp             HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred             ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEE
Confidence            44578999999999999999999999998877777  4443

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.81  E-value=8.1e-06  Score=66.10  Aligned_cols=32  Identities=25%  Similarity=0.376  Sum_probs=26.3

Q ss_pred             eceEEEeCCcEEEEECCCCchHHHHHHHHhCC
Q 024529           74 NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        74 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      ++|++..+|.+++|+|++||||||+.+.|+..
T Consensus         2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            56888889999999999999999999999864

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.81  E-value=7.7e-07  Score=78.19  Aligned_cols=54  Identities=20%  Similarity=0.108  Sum_probs=43.3

Q ss_pred             EEEeeEEEcCCCCcceee-ceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEE
Q 024529           57 SFSDASFGYPGGPILFKN-LNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF  114 (266)
Q Consensus        57 ~~~~l~~~y~~~~~~l~~-vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~  114 (266)
                      ..+++...|++..   ++ ++|+.+ |.+++++|+||+||||++..|++.+.+..|.|.
T Consensus        76 ~~~~l~~~~~~~~---~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~  130 (297)
T 1j8m_F           76 VYDELSNLFGGDK---EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVG  130 (297)
T ss_dssp             HHHHHHHHTTCSC---CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEE
T ss_pred             HHHHHHHHhcccc---ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence            3456777774332   56 788876 999999999999999999999999887777665

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.79  E-value=8.2e-06  Score=66.84  Aligned_cols=21  Identities=38%  Similarity=0.646  Sum_probs=20.3

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q 024529           84 RIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      +++|+|+|||||||+.++|++
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            689999999999999999999

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=97.76  E-value=6.1e-06  Score=77.44  Aligned_cols=57  Identities=23%  Similarity=0.360  Sum_probs=44.6

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEc
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS  116 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~  116 (266)
                      ..+++++...|. ...+++++++.+++|  +.|+||||+|||||+++|++...  .+.+.++
T Consensus        40 k~~l~~lv~~l~-~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~   96 (499)
T 2dhr_A           40 KEELKEIVEFLK-NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITAS   96 (499)
T ss_dssp             HHHHHHHHHHHH-CGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEE
T ss_pred             HHHHHHHHHHhh-chhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEe
Confidence            345666666663 345789999999999  99999999999999999999764  4555543

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=97.76  E-value=2.4e-05  Score=70.51  Aligned_cols=43  Identities=21%  Similarity=0.423  Sum_probs=32.7

Q ss_pred             EEEEeeEEE-cCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHh
Q 024529           56 ISFSDASFG-YPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIA  103 (266)
Q Consensus        56 l~~~~l~~~-y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~  103 (266)
                      ..+..|+.. |.    .+++..+++.+| +++|+|||||||||+|.+|.
T Consensus         3 M~l~~L~l~nFr----~~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~   46 (371)
T 3auy_A            3 MILKEIRMNNFK----SHVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF   46 (371)
T ss_dssp             EEEEEEEEEEET----TEEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred             cEEeEEEEEccc----cccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence            445555543 31    357788888775 99999999999999999985

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.75  E-value=1.8e-05  Score=64.05  Aligned_cols=33  Identities=18%  Similarity=0.437  Sum_probs=20.8

Q ss_pred             ceeeceEEEeCCcEEEEECCCCchHHHHHHHHhC
Q 024529           71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        71 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      +++++++..+.. .++|+|++|+|||||++.+.+
T Consensus        13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~   45 (190)
T 1m2o_B           13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN   45 (190)
T ss_dssp             -----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred             HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence            678999998876 789999999999999999987

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.74  E-value=1.6e-05  Score=63.43  Aligned_cols=27  Identities=26%  Similarity=0.489  Sum_probs=23.4

Q ss_pred             eCCcEEEEECCCCchHHHHHHHHhCCC
Q 024529           80 DLDSRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      ++|..++|+|++|+|||||++.++|..
T Consensus         2 ~~~~ki~ivG~~g~GKStLl~~l~~~~   28 (172)
T 2gj8_A            2 SHGMKVVIAGRPNAGKSSLLNALAGRE   28 (172)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            367899999999999999999999864

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=97.74  E-value=4.7e-05  Score=67.10  Aligned_cols=27  Identities=26%  Similarity=0.387  Sum_probs=24.6

Q ss_pred             EEeCCcEEEEECCCCchHHHHHHHHhC
Q 024529           78 GIDLDSRIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        78 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      -+++|+++.|.||+|||||||...++.
T Consensus        94 Gl~~g~i~~i~G~~gsGKT~la~~la~  120 (322)
T 2i1q_A           94 GLESQSVTEFAGVFGSGKTQIMHQSCV  120 (322)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999999988874

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.73  E-value=3.5e-05  Score=67.00  Aligned_cols=31  Identities=26%  Similarity=0.559  Sum_probs=26.7

Q ss_pred             cEEEEECCCCchHHHHHHHHhCCCCCCceEE
Q 024529           83 SRIAMVGPNGIGKSTILKLIAGELQPSSGTV  113 (266)
Q Consensus        83 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i  113 (266)
                      ..+.|+||+|+|||||.++|++...+..|.+
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~   78 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM   78 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence            5799999999999999999999877666543

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.73  E-value=7.3e-06  Score=66.24  Aligned_cols=35  Identities=31%  Similarity=0.328  Sum_probs=29.7

Q ss_pred             EeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEE
Q 024529           79 IDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV  113 (266)
Q Consensus        79 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i  113 (266)
                      ..+|.+++|+|++||||||+.+.|+..+.+..+.+
T Consensus        10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~   44 (186)
T 2yvu_A           10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV   44 (186)
T ss_dssp             CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence            34789999999999999999999998876665554

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.73  E-value=1.4e-05  Score=65.67  Aligned_cols=29  Identities=28%  Similarity=0.599  Sum_probs=25.9

Q ss_pred             EeCCcEEEEECCCCchHHHHHHHHhCCCC
Q 024529           79 IDLDSRIAMVGPNGIGKSTILKLIAGELQ  107 (266)
Q Consensus        79 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~  107 (266)
                      ..+|.+++|+||+|||||||.+.|+..++
T Consensus         9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A            9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence            45899999999999999999999987663

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.70  E-value=1e-06  Score=78.40  Aligned_cols=49  Identities=20%  Similarity=0.280  Sum_probs=39.7

Q ss_pred             EEEcCCCCcceeeceEEEeCCcE--EEEECCCCchHHHHHHHHhCCCCCCce
Q 024529           62 SFGYPGGPILFKNLNFGIDLDSR--IAMVGPNGIGKSTILKLIAGELQPSSG  111 (266)
Q Consensus        62 ~~~y~~~~~~l~~vsl~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~p~~G  111 (266)
                      +..| +...+++.++..+..|++  +.+.||+|+||||+++++++.+.+..+
T Consensus        25 ~~~~-g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~   75 (340)
T 1sxj_C           25 DEVY-GQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY   75 (340)
T ss_dssp             GGCC-SCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred             HHhc-CcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence            3345 344578899999999998  999999999999999999997655443

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=97.70  E-value=3.1e-05  Score=71.37  Aligned_cols=35  Identities=31%  Similarity=0.602  Sum_probs=29.3

Q ss_pred             EEEEECCCCchHHHHHHHHhCCCC------------CCceEEEEcCe
Q 024529           84 RIAMVGPNGIGKSTILKLIAGELQ------------PSSGTVFRSAK  118 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~~------------p~~G~i~~~~~  118 (266)
                      .++|+|+||+|||||++.|+|...            +..|.+.+++.
T Consensus       182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~  228 (439)
T 1mky_A          182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR  228 (439)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE
T ss_pred             eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE
Confidence            799999999999999999999854            56677777664

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=97.69  E-value=0.00013  Score=60.00  Aligned_cols=42  Identities=21%  Similarity=0.235  Sum_probs=31.6

Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CEEEEEecCHHH
Q 024529          191 KKPHIILLDEPSNHLDLDAVEALIQGLVLFQ--GGILMVSHDEHL  233 (266)
Q Consensus       191 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~tiiivtHd~~~  233 (266)
                      .+|.+|++||.-. +|......+...+.+..  ..+|++|++...
T Consensus       125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~  168 (250)
T 1njg_A          125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQK  168 (250)
T ss_dssp             SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGG
T ss_pred             CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence            3578999999765 78888888888887642  357888887653

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=97.67  E-value=2.4e-05  Score=71.21  Aligned_cols=39  Identities=23%  Similarity=0.451  Sum_probs=31.4

Q ss_pred             EeCCcEEEEECCCCchHHHHHHHHhCC-----------CCCCceEEEEcC
Q 024529           79 IDLDSRIAMVGPNGIGKSTILKLIAGE-----------LQPSSGTVFRSA  117 (266)
Q Consensus        79 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~~  117 (266)
                      +..|..++|+|+||+|||||++.|+|.           ..|..|.+.+.+
T Consensus        19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~   68 (396)
T 2ohf_A           19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD   68 (396)
T ss_dssp             SSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence            457788999999999999999999998           567778776543

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=97.67  E-value=2.3e-05  Score=62.98  Aligned_cols=27  Identities=26%  Similarity=0.511  Sum_probs=20.9

Q ss_pred             EEEEECCCCchHHHHHHHHhCCCCCCc
Q 024529           84 RIAMVGPNGIGKSTILKLIAGELQPSS  110 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~  110 (266)
                      .++|+|++|+|||||++.++|...+..
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~~~~~~   30 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKTKKSDL   30 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC-----
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCccC
Confidence            589999999999999999999754433

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=97.66  E-value=3.1e-05  Score=61.04  Aligned_cols=24  Identities=42%  Similarity=0.697  Sum_probs=21.8

Q ss_pred             EEEEECCCCchHHHHHHHHhCCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGELQ  107 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~~  107 (266)
                      .++|+|++|+|||||++.++|...
T Consensus         5 ~v~lvG~~gvGKStL~~~l~~~~~   28 (165)
T 2wji_A            5 EIALIGNPNVGKSTIFNALTGENV   28 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCe
Confidence            689999999999999999999653

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=97.62  E-value=0.00016  Score=66.76  Aligned_cols=128  Identities=18%  Similarity=0.189  Sum_probs=73.4

Q ss_pred             ceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCc
Q 024529           71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVP  150 (266)
Q Consensus        71 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~  150 (266)
                      -|+.+.--+.+|+++.|.|++|+|||||+..++.......|.       .+.|+.-        ...... +.       
T Consensus       189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~-------~vl~~sl--------E~~~~~-l~-------  245 (444)
T 2q6t_A          189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGV-------GVGIYSL--------EMPAAQ-LT-------  245 (444)
T ss_dssp             HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCC-------CEEEEES--------SSCHHH-HH-------
T ss_pred             hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCC-------eEEEEEC--------CCCHHH-HH-------
Confidence            466666568999999999999999999998887644322221       1222211        111111 10       


Q ss_pred             HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHh-hcCCEEEEEe
Q 024529          151 EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV-LFQGGILMVS  228 (266)
Q Consensus       151 ~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~-~~~~tiiivt  228 (266)
                       .++..  ...+++...  ..-+.||..+.+|+.-|...+.+.++++.|+|.  +++......+..+. +.+..+|+|.
T Consensus       246 -~R~~~--~~~~i~~~~--l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~--~s~~~l~~~~~~l~~~~~~~lIvID  317 (444)
T 2q6t_A          246 -LRMMC--SEARIDMNR--VRLGQLTDRDFSRLVDVASRLSEAPIYIDDTPD--LTLMEVRARARRLVSQNQVGLIIID  317 (444)
T ss_dssp             -HHHHH--HHTTCCTTT--CCGGGCCHHHHHHHHHHHHHHHTSCEEEECCTT--CBHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred             -HHHHH--HHcCCCHHH--HhCCCCCHHHHHHHHHHHHHHhcCCEEEECCCC--CCHHHHHHHHHHHHHHcCCCEEEEc
Confidence             01111  123332111  112468999999988887777778888888764  44544444344333 4455666664

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.57  E-value=7.8e-06  Score=73.29  Aligned_cols=37  Identities=30%  Similarity=0.414  Sum_probs=33.0

Q ss_pred             cceeeceEEEeCCcE--EEEECCCCchHHHHHHHHhCCC
Q 024529           70 ILFKNLNFGIDLDSR--IAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        70 ~~l~~vsl~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .+++.+++.+++|++  ++|+|++||||||+.++|++.+
T Consensus        10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l   48 (359)
T 2ga8_A           10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII   48 (359)
T ss_dssp             HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence            367888888999998  9999999999999999999854

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.57  E-value=0.00011  Score=63.04  Aligned_cols=28  Identities=36%  Similarity=0.559  Sum_probs=24.1

Q ss_pred             EeCCcEEEEECCCCchHHHHHHHHhCCC
Q 024529           79 IDLDSRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        79 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      +.++.-+.|.||.|+|||||++.++...
T Consensus        48 ~~~~~~~ll~G~~GtGKT~la~~la~~~   75 (285)
T 3h4m_A           48 IEPPKGILLYGPPGTGKTLLAKAVATET   75 (285)
T ss_dssp             CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred             CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence            3456679999999999999999998764

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=97.56  E-value=0.00063  Score=61.26  Aligned_cols=27  Identities=30%  Similarity=0.417  Sum_probs=23.9

Q ss_pred             EEeCCcEEEEECCCCchHHHHHHHHhC
Q 024529           78 GIDLDSRIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        78 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      -+++|+++.|.||.|+|||||...++-
T Consensus        70 Gl~~G~li~I~G~pGsGKTtlal~la~   96 (366)
T 1xp8_A           70 GIPRGRITEIYGPESGGKTTLALAIVA   96 (366)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence            368999999999999999999877754

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.56  E-value=3.1e-05  Score=63.38  Aligned_cols=25  Identities=32%  Similarity=0.449  Sum_probs=22.5

Q ss_pred             CcEEEEECCCCchHHHHHHHHhCCC
Q 024529           82 DSRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        82 Ge~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      ..+++|+|++|||||||.+.|++.+
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~l   42 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEAC   42 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999998764

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.53  E-value=3.7e-05  Score=61.78  Aligned_cols=25  Identities=32%  Similarity=0.570  Sum_probs=22.1

Q ss_pred             eCCcEEEEECCCCchHHHHHHHHhC
Q 024529           80 DLDSRIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        80 ~~Ge~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      .+|.+++|+|++||||||+.+.|+.
T Consensus         2 ~~g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            2 DVGQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3578999999999999999999984

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=97.50  E-value=4.6e-05  Score=64.08  Aligned_cols=26  Identities=42%  Similarity=0.497  Sum_probs=23.4

Q ss_pred             EeCCcEEEEECCCCchHHHHHHHHhC
Q 024529           79 IDLDSRIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        79 i~~Ge~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      -.+|.+++|+|++||||||+.++|++
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            35788999999999999999999986

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.48  E-value=5.7e-05  Score=60.35  Aligned_cols=22  Identities=45%  Similarity=0.828  Sum_probs=20.7

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|++|+|||||++.++|.
T Consensus         9 ~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            9 EIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999985

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.45  E-value=3.5e-05  Score=65.42  Aligned_cols=35  Identities=43%  Similarity=0.628  Sum_probs=24.9

Q ss_pred             ceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC
Q 024529           71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ  107 (266)
Q Consensus        71 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~  107 (266)
                      .++++++.++.|  +.|+||+|+|||||+++|++...
T Consensus        36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~   70 (257)
T 1lv7_A           36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK   70 (257)
T ss_dssp             GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred             HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence            345555555555  89999999999999999998653

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.43  E-value=3e-05  Score=62.67  Aligned_cols=26  Identities=31%  Similarity=0.405  Sum_probs=23.1

Q ss_pred             cEEEEECCCCchHHHHHHHHhCCCCC
Q 024529           83 SRIAMVGPNGIGKSTILKLIAGELQP  108 (266)
Q Consensus        83 e~~~l~G~nGsGKSTLl~~l~Gl~~p  108 (266)
                      .+++|+|++|||||||++.|.+.+.+
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~l~~   32 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPALCA   32 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhccc
Confidence            58999999999999999999987544

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.42  E-value=7.4e-05  Score=58.92  Aligned_cols=23  Identities=35%  Similarity=0.403  Sum_probs=20.7

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      +++|+|++||||||+.+.|+..+
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l   25 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKEL   25 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999998653

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.39  E-value=9.9e-05  Score=58.77  Aligned_cols=25  Identities=28%  Similarity=0.406  Sum_probs=22.6

Q ss_pred             CcEEEEECCCCchHHHHHHHHhCCC
Q 024529           82 DSRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        82 Ge~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      |.++.|+|++||||||+.+.|+..+
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l   27 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            5689999999999999999998754

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.37  E-value=5e-05  Score=64.23  Aligned_cols=23  Identities=35%  Similarity=0.544  Sum_probs=20.9

Q ss_pred             CcEEEEECCCCchHHHHHHHHhC
Q 024529           82 DSRIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        82 Ge~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      .-+++|.||+||||||+.+.|+.
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999999984

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=97.35  E-value=0.00012  Score=67.85  Aligned_cols=56  Identities=11%  Similarity=0.032  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHHHHHHHHHHhhcCCEEEEEecCHHHH
Q 024529          178 GQKSRVAFAKITFKKPHIILLDEPSN-HLDLDAVEALIQGLVLFQGGILMVSHDEHLI  234 (266)
Q Consensus       178 GqkqRv~lAral~~~p~lllLDEPt~-~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~  234 (266)
                      .+.+....+...+.+++++|+..... ++.. ...++.+.+.+.+..+|+|.+-.+..
T Consensus        88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~-~d~~l~~~l~~~~~pvilV~NK~D~~  144 (456)
T 4dcu_A           88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTA-ADEEVAKILYRTKKPVVLAVNKLDNT  144 (456)
T ss_dssp             CHHHHHHHHHHHHHHCSEEEEEEESSSCSCH-HHHHHHHHHTTCCSCEEEEEECC---
T ss_pred             HHHHHHHHHHhhHhhCCEEEEEEeCCCCCCh-HHHHHHHHHHHcCCCEEEEEECccch
Confidence            46777777888888888877765544 4444 34677788877777788777766654

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=97.35  E-value=0.00021  Score=63.59  Aligned_cols=27  Identities=26%  Similarity=0.479  Sum_probs=23.6

Q ss_pred             eCCcEEEEECCCCchHHHHHHHHhCCC
Q 024529           80 DLDSRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      ..+..+.|.||.|+|||||++.++...
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~~~   68 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLRRL   68 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            456789999999999999999998755

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=97.33  E-value=0.00082  Score=62.06  Aligned_cols=34  Identities=12%  Similarity=0.227  Sum_probs=27.5

Q ss_pred             ceeeceEEEeCCcEEEEECCCCchHHHHHHHHhC
Q 024529           71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        71 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      -|+.+.--+.+|+.+.|.|+.|+|||||+--++.
T Consensus       186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~  219 (444)
T 3bgw_A          186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK  219 (444)
T ss_dssp             HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred             HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence            3455443589999999999999999999877764

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.31  E-value=0.00013  Score=58.52  Aligned_cols=24  Identities=21%  Similarity=0.425  Sum_probs=21.7

Q ss_pred             CcEEEEECCCCchHHHHHHHHhCC
Q 024529           82 DSRIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        82 Ge~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      |.+++|.|++||||||+.+.|+-.
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~   26 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDN   26 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            678999999999999999999763

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.25  E-value=0.00014  Score=57.08  Aligned_cols=19  Identities=42%  Similarity=0.581  Sum_probs=18.3

Q ss_pred             EEEEECCCCchHHHHHHHH
Q 024529           84 RIAMVGPNGIGKSTILKLI  102 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l  102 (266)
                      +++|+|++||||||+.+.|
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            6899999999999999999

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.25  E-value=6.3e-05  Score=64.03  Aligned_cols=30  Identities=30%  Similarity=0.402  Sum_probs=26.2

Q ss_pred             EEeCCcEEEEECCCCchHHHHHHHHhCCCC
Q 024529           78 GIDLDSRIAMVGPNGIGKSTILKLIAGELQ  107 (266)
Q Consensus        78 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~  107 (266)
                      ....+.++.|+|++||||||+.+.|+..+.
T Consensus        28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~   57 (253)
T 2p5t_B           28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ   57 (253)
T ss_dssp             CCSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            456788999999999999999999998654

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.22  E-value=0.00016  Score=58.56  Aligned_cols=23  Identities=48%  Similarity=0.644  Sum_probs=20.9

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      +++|.|++||||||+.+.|+..+
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l   24 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKL   24 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHhc
Confidence            68999999999999999998744

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.22  E-value=0.00017  Score=59.60  Aligned_cols=24  Identities=38%  Similarity=0.476  Sum_probs=21.8

Q ss_pred             CCcEEEEECCCCchHHHHHHHHhC
Q 024529           81 LDSRIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        81 ~Ge~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      .+-+++|+|++||||||+.+.|+.
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            345899999999999999999987

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=97.22  E-value=3.7e-05  Score=63.14  Aligned_cols=25  Identities=32%  Similarity=0.636  Sum_probs=22.3

Q ss_pred             EEEEECCCCchHHHHHHHHhCCCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGELQP  108 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~~p  108 (266)
                      +++|.|++||||||+++.|+..+.+
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~   26 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRA   26 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            6899999999999999999887654

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.21  E-value=0.00016  Score=58.22  Aligned_cols=26  Identities=23%  Similarity=0.325  Sum_probs=22.7

Q ss_pred             eCCcEEEEECCCCchHHHHHHHHhCC
Q 024529           80 DLDSRIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++.++.|+|++||||||+.+.|+..
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~~   28 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATG   28 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            35778999999999999999999753

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.21  E-value=0.00016  Score=58.97  Aligned_cols=22  Identities=50%  Similarity=0.813  Sum_probs=19.3

Q ss_pred             EEEECCCCchHHHHHHHHhCCC
Q 024529           85 IAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        85 ~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      +.|+||||||||||++.|....
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            7899999999999999987543

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.20  E-value=0.00016  Score=57.66  Aligned_cols=23  Identities=39%  Similarity=0.622  Sum_probs=20.6

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      +++|+|++||||||+.+.|+..+
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l   28 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDL   28 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            58999999999999999998643

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.20  E-value=0.00015  Score=61.76  Aligned_cols=23  Identities=30%  Similarity=0.339  Sum_probs=20.6

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      +++|+||+|||||||.+.|++.+
T Consensus         3 li~I~G~~GSGKSTla~~La~~~   25 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQET   25 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHhcC
Confidence            68999999999999999998643

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.17  E-value=0.0034  Score=57.83  Aligned_cols=28  Identities=32%  Similarity=0.396  Sum_probs=24.4

Q ss_pred             CCcEEEEECCCCchHHHHHHHHhCCCCC
Q 024529           81 LDSRIAMVGPNGIGKSTILKLIAGELQP  108 (266)
Q Consensus        81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p  108 (266)
                      ++.+++++|++||||||++..|+..+..
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~  126 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQK  126 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence            4679999999999999999999876654

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.17  E-value=0.00023  Score=57.79  Aligned_cols=26  Identities=23%  Similarity=0.203  Sum_probs=23.9

Q ss_pred             CCcEEEEECCCCchHHHHHHHHhCCC
Q 024529           81 LDSRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      +|-+++|+|+.||||||+.+.|+..+
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999999765

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.16  E-value=0.0002  Score=57.22  Aligned_cols=25  Identities=36%  Similarity=0.494  Sum_probs=22.2

Q ss_pred             eCCcEEEEECCCCchHHHHHHHHhC
Q 024529           80 DLDSRIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        80 ~~Ge~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      ..+..+.|+|++||||||+.+.|+-
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence            3567899999999999999999983

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=97.16  E-value=0.00019  Score=61.65  Aligned_cols=42  Identities=17%  Similarity=0.211  Sum_probs=29.7

Q ss_pred             CCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEE
Q 024529          201 PSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELW  242 (266)
Q Consensus       201 Pt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~  242 (266)
                      |||+.+..+...+++.+.+.    ..+..+.+|..+.++..++++.
T Consensus       144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~e~~~~~l~  189 (271)
T 3k53_A          144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDEDIEREIKHIS  189 (271)
T ss_dssp             ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCCHHHHHHHHHHH
T ss_pred             EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCCHHHHHHHHHHH
Confidence            89999988887777766432    2344667788787777776654

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.15  E-value=0.00024  Score=56.93  Aligned_cols=25  Identities=24%  Similarity=0.291  Sum_probs=21.6

Q ss_pred             CCcEEEEECCCCchHHHHHHHHhCC
Q 024529           81 LDSRIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .+..+.|+|+.||||||+.+.|+..
T Consensus         4 ~~~~i~l~G~~GsGKst~a~~La~~   28 (185)
T 3trf_A            4 NLTNIYLIGLMGAGKTSVGSQLAKL   28 (185)
T ss_dssp             -CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHH
Confidence            3668999999999999999999753

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=97.15  E-value=0.0019  Score=56.98  Aligned_cols=120  Identities=11%  Similarity=0.170  Sum_probs=64.7

Q ss_pred             EeCCcEEEEECCCCchHHHH-HHHHhCCCCCC-ceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHH
Q 024529           79 IDLDSRIAMVGPNGIGKSTI-LKLIAGELQPS-SGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRA  156 (266)
Q Consensus        79 i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~~p~-~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (266)
                      +++| ++-|.||.||||||| +.+++...+.. .|.+        .|+.-+.    .+.               ..    
T Consensus        26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~v--------lyId~E~----s~~---------------~~----   73 (333)
T 3io5_A           26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVC--------LFYDSEF----GIT---------------PA----   73 (333)
T ss_dssp             BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEE--------EEEESSC----CCC---------------HH----
T ss_pred             CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceE--------EEEeccc----hhh---------------HH----
Confidence            5788 899999999999999 44444433211 2222        2332211    000               11    


Q ss_pred             HHHhcCCCcccccCCCCCCChHHHHHHHHHHHH--c--cCCCEEEEeCCCCCCC-H--H-----------HH-HH-----
Q 024529          157 HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT--F--KKPHIILLDEPSNHLD-L--D-----------AV-EA-----  212 (266)
Q Consensus       157 ~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral--~--~~p~lllLDEPt~~LD-~--~-----------~~-~~-----  212 (266)
                      .++++|++.+  +..+..-.-+|.+.+.++.++  +  .+|+++++|--++-.- .  .           .+ +.     
T Consensus        74 ra~~lGvd~d--~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~L  151 (333)
T 3io5_A           74 YLRSMGVDPE--RVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLF  151 (333)
T ss_dssp             HHHHTTCCGG--GEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHH
T ss_pred             HHHHhCCCHH--HeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHH
Confidence            1344555321  111112224566657777776  4  3699999998877641 0  0           11 11     


Q ss_pred             --HHHHHhhcCCEEEEEecCHH
Q 024529          213 --LIQGLVLFQGGILMVSHDEH  232 (266)
Q Consensus       213 --l~~~l~~~~~tiiivtHd~~  232 (266)
                        +...+++.+.++|++-|-..
T Consensus       152 rkL~~~ak~~~i~vi~tNQV~k  173 (333)
T 3io5_A          152 RIVTPYFSTKNIPCIAINHTYE  173 (333)
T ss_dssp             HHHHHHHHHTTCEEEEEEEC--
T ss_pred             HHHHHHHHHhCCEEEEECCeee
Confidence              22234566789999999765

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.14  E-value=0.00023  Score=56.40  Aligned_cols=22  Identities=32%  Similarity=0.342  Sum_probs=20.2

Q ss_pred             cEEEEECCCCchHHHHHHHHhC
Q 024529           83 SRIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        83 e~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      .++.|.|++||||||+.+.|+.
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4689999999999999999986

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.10  E-value=0.00027  Score=57.55  Aligned_cols=27  Identities=30%  Similarity=0.361  Sum_probs=23.4

Q ss_pred             CCcEEEEECCCCchHHHHHHHHhCCCC
Q 024529           81 LDSRIAMVGPNGIGKSTILKLIAGELQ  107 (266)
Q Consensus        81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~  107 (266)
                      +|-+++|.|+.||||||+.+.|+..+.
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~   29 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIE   29 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            467899999999999999999987543

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=97.09  E-value=0.00041  Score=62.36  Aligned_cols=36  Identities=25%  Similarity=0.486  Sum_probs=28.9

Q ss_pred             CcEEEEECCCCchHHHHHHHHhC-----------CCCCCceEEEEcC
Q 024529           82 DSRIAMVGPNGIGKSTILKLIAG-----------ELQPSSGTVFRSA  117 (266)
Q Consensus        82 Ge~~~l~G~nGsGKSTLl~~l~G-----------l~~p~~G~i~~~~  117 (266)
                      |-.++|+|.+|+|||||++.|+|           -+.|..|.+.+.+
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~   48 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD   48 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence            45799999999999999999998           3356677776543

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.08  E-value=0.00026  Score=57.41  Aligned_cols=24  Identities=33%  Similarity=0.392  Sum_probs=21.6

Q ss_pred             CcEEEEECCCCchHHHHHHHHhCC
Q 024529           82 DSRIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        82 Ge~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      ..+++|+|++||||||+.+.|+..
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHC
Confidence            357999999999999999999975

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=97.08  E-value=0.00016  Score=65.37  Aligned_cols=35  Identities=20%  Similarity=0.181  Sum_probs=29.7

Q ss_pred             CCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEE
Q 024529           81 LDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR  115 (266)
Q Consensus        81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~  115 (266)
                      .+..++|+||+|||||||++.|++...+..+.|.+
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~   68 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVII   68 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEE
Confidence            56789999999999999999999877777777653

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.08  E-value=0.00028  Score=57.63  Aligned_cols=26  Identities=31%  Similarity=0.258  Sum_probs=23.0

Q ss_pred             eCCcEEEEECCCCchHHHHHHHHhCC
Q 024529           80 DLDSRIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      ..|-+++|+|+.||||||+.+.|+..
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~~   33 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVEY   33 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            36789999999999999999999753

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.06  E-value=0.00031  Score=56.62  Aligned_cols=26  Identities=31%  Similarity=0.325  Sum_probs=22.8

Q ss_pred             eCCcEEEEECCCCchHHHHHHHHhCC
Q 024529           80 DLDSRIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++-+++|+|+.||||||+.+.|+..
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~La~~   32 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQCEKIVQK   32 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            35779999999999999999999753

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.05  E-value=0.00016  Score=63.09  Aligned_cols=30  Identities=37%  Similarity=0.635  Sum_probs=26.7

Q ss_pred             EEEeCCcEEEEECCCCchHHHHHHHHhCCC
Q 024529           77 FGIDLDSRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        77 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      +.+.++..+.|.||+|+|||||+++|++..
T Consensus        44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~   73 (301)
T 3cf0_A           44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC   73 (301)
T ss_dssp             HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred             cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence            446788899999999999999999999865

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.04  E-value=0.00033  Score=56.23  Aligned_cols=23  Identities=26%  Similarity=0.281  Sum_probs=20.8

Q ss_pred             CcEEEEECCCCchHHHHHHHHhC
Q 024529           82 DSRIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        82 Ge~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      +.+++|+|+.||||||+.+.|+.
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            56899999999999999999874

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.03  E-value=0.00033  Score=57.29  Aligned_cols=27  Identities=22%  Similarity=0.238  Sum_probs=23.4

Q ss_pred             EeCCcEEEEECCCCchHHHHHHHHhCC
Q 024529           79 IDLDSRIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        79 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      ..+|-+++|+|+.||||||+.+.|+-.
T Consensus         6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~   32 (215)
T 1nn5_A            6 ARRGALIVLEGVDRAGKSTQSRKLVEA   32 (215)
T ss_dssp             -CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            356889999999999999999999853

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.03  E-value=0.00026  Score=61.50  Aligned_cols=27  Identities=22%  Similarity=0.321  Sum_probs=23.1

Q ss_pred             eCCcEEEEECCCCchHHHHHHHHhCCC
Q 024529           80 DLDSRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      ..+.++.|.||+||||||+.+.|+.-+
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~~~   57 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFEET   57 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            346789999999999999999998643

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=97.02  E-value=0.00096  Score=62.19  Aligned_cols=57  Identities=23%  Similarity=0.167  Sum_probs=48.6

Q ss_pred             EEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcC
Q 024529           57 SFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA  117 (266)
Q Consensus        57 ~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~  117 (266)
                      .+.+++...   ..+|+++||+|++ ++++|+|||||||||||++|+|+++|++|+|.+++
T Consensus         8 ~l~~l~~~~---~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g   64 (483)
T 3euj_A            8 KFRSLTLIN---WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRN   64 (483)
T ss_dssp             EEEEEEEEE---ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCC
T ss_pred             ceeEEEEec---cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECC
Confidence            345555432   2479999999999 99999999999999999999999999999998655

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.00  E-value=0.00033  Score=56.13  Aligned_cols=23  Identities=35%  Similarity=0.421  Sum_probs=20.6

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      +++|.|+.||||||+.+.|+..+
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l   25 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEIL   25 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999998644

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.99  E-value=0.00032  Score=57.04  Aligned_cols=23  Identities=30%  Similarity=0.589  Sum_probs=21.1

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      +++|.|++||||||+.+.|+..+
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~l   26 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAAL   26 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            79999999999999999998743

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.98  E-value=0.00035  Score=56.09  Aligned_cols=26  Identities=19%  Similarity=0.216  Sum_probs=22.5

Q ss_pred             cEEEEECCCCchHHHHHHHHhCCCCC
Q 024529           83 SRIAMVGPNGIGKSTILKLIAGELQP  108 (266)
Q Consensus        83 e~~~l~G~nGsGKSTLl~~l~Gl~~p  108 (266)
                      .+++|+|++|||||||+..|+..+..
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l~~   30 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAAVR   30 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence            37899999999999999999886543

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=96.96  E-value=0.00037  Score=55.84  Aligned_cols=24  Identities=29%  Similarity=0.641  Sum_probs=21.8

Q ss_pred             cEEEEECCCCchHHHHHHHHhCCC
Q 024529           83 SRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        83 e~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      =.++|+|+.|||||||++.+.+..
T Consensus        49 ~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           49 PSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            479999999999999999999864

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=96.96  E-value=0.00041  Score=59.85  Aligned_cols=23  Identities=35%  Similarity=0.683  Sum_probs=21.3

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .++|+|++|||||||++.++|..
T Consensus         5 kI~lvG~~nvGKSTL~n~L~g~~   27 (272)
T 3b1v_A            5 EIALIGNPNSGKTSLFNLITGHN   27 (272)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            68999999999999999999964

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=96.95  E-value=0.00027  Score=59.21  Aligned_cols=63  Identities=14%  Similarity=0.192  Sum_probs=37.3

Q ss_pred             CChHHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHHHHHHHHHHh-hcC-C-EEEE-EecCHHHHHhhcC
Q 024529          175 LSGGQKSRVAFAKITFKKPHIILLDEPSN-HLDLDAVEALIQGLV-LFQ-G-GILM-VSHDEHLISGSVE  239 (266)
Q Consensus       175 LSgGqkqRv~lAral~~~p~lllLDEPt~-~LD~~~~~~l~~~l~-~~~-~-tiii-vtHd~~~~~~~~d  239 (266)
                      .+.|...+..  ...+.+.+++++||.-. ++|.......++.+. ... . ++++ .|.+.+.+.++.+
T Consensus       161 ~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~  228 (235)
T 3llm_A          161 CTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFF  228 (235)
T ss_dssp             EEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTT
T ss_pred             ECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcC
Confidence            4556666653  33688999999999976 577766544444443 222 2 3333 3556555555443

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.95  E-value=0.00032  Score=55.94  Aligned_cols=25  Identities=24%  Similarity=0.373  Sum_probs=17.7

Q ss_pred             CCcEEEEECCCCchHHHHHHHHhCC
Q 024529           81 LDSRIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      ++.++.|.|++||||||+.+.|+..
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~   28 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHER   28 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHh
Confidence            4678999999999999999999753

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=96.95  E-value=0.001  Score=53.26  Aligned_cols=28  Identities=25%  Similarity=0.456  Sum_probs=21.9

Q ss_pred             EEEEECCCCchHHHHHHHHhC-C----CCCCce
Q 024529           84 RIAMVGPNGIGKSTILKLIAG-E----LQPSSG  111 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~G-l----~~p~~G  111 (266)
                      .++|+|++|+|||||++.+.+ .    +.|+.|
T Consensus        22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~   54 (184)
T 3ihw_A           22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG   54 (184)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc
Confidence            589999999999999975554 3    456655

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=96.91  E-value=0.00041  Score=55.38  Aligned_cols=22  Identities=45%  Similarity=0.752  Sum_probs=20.7

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|++|+|||||++.+.+-
T Consensus        18 ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           18 RILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999986

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.91  E-value=0.00037  Score=56.23  Aligned_cols=27  Identities=22%  Similarity=0.283  Sum_probs=23.5

Q ss_pred             EeCCcEEEEECCCCchHHHHHHHHhCC
Q 024529           79 IDLDSRIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        79 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      +..+-+++|+|+.||||||+.+.|+..
T Consensus         9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~   35 (199)
T 2bwj_A            9 LRKCKIIFIIGGPGSGKGTQCEKLVEK   35 (199)
T ss_dssp             HHHSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            346779999999999999999999764

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=96.90  E-value=0.00042  Score=53.82  Aligned_cols=24  Identities=25%  Similarity=0.679  Sum_probs=20.4

Q ss_pred             EEEEECCCCchHHHHHHHHhCCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGELQ  107 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~~  107 (266)
                      .++|+|+.|+|||||++.+.|...
T Consensus         4 ki~~vG~~~~GKSsli~~l~~~~~   27 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGGVED   27 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCC--
T ss_pred             EEEEECCCCCCHHHHHHHHcCccc
Confidence            589999999999999999988543

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=96.90  E-value=0.00053  Score=53.64  Aligned_cols=23  Identities=35%  Similarity=0.801  Sum_probs=20.5

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         6 ki~i~G~~~vGKSsl~~~l~~~~   28 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFAGKQ   28 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC-
T ss_pred             EEEEECCCCccHHHHHHHHhcCC
Confidence            58999999999999999999864

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=96.90  E-value=0.0058  Score=64.71  Aligned_cols=27  Identities=19%  Similarity=0.433  Sum_probs=24.1

Q ss_pred             EeCCcEEEEECCCCchHHHHHHHHhCC
Q 024529           79 IDLDSRIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        79 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      +++|+++.|.||.|+|||||.-.++..
T Consensus       380 l~~G~lilI~G~pGsGKTtLaLq~a~~  406 (1706)
T 3cmw_A          380 LPMGRIVEIYGPESSGKTTLTLQVIAA  406 (1706)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence            889999999999999999998777643

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=96.89  E-value=0.012  Score=54.81  Aligned_cols=33  Identities=18%  Similarity=0.179  Sum_probs=26.5

Q ss_pred             eeeceEEEeCCcEEEEECCCCchHHHHHHHHhC
Q 024529           72 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        72 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      |+.+---+.+|+++.|.|++|+|||||+--++-
T Consensus       232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~  264 (503)
T 1q57_A          232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL  264 (503)
T ss_dssp             HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred             hhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence            444433589999999999999999999776654

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.88  E-value=0.00058  Score=53.12  Aligned_cols=22  Identities=32%  Similarity=0.635  Sum_probs=20.2

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|+.|+|||||++.+.+-
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999874

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=96.88  E-value=0.00057  Score=53.23  Aligned_cols=23  Identities=35%  Similarity=0.658  Sum_probs=20.2

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .++|+|+.|+|||||++.+.+..
T Consensus         4 ki~ivG~~~~GKSsli~~l~~~~   26 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFGGLQ   26 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCC-
T ss_pred             EEEEECCCCCCHHHHHHHHHhcc
Confidence            47899999999999999998754

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=96.87  E-value=0.00048  Score=53.43  Aligned_cols=22  Identities=23%  Similarity=0.546  Sum_probs=20.2

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|+.|+|||||++.+.+-
T Consensus         7 ~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5899999999999999999874

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.87  E-value=0.00061  Score=56.29  Aligned_cols=25  Identities=28%  Similarity=0.486  Sum_probs=22.3

Q ss_pred             CCcEEEEECCCCchHHHHHHHHhCC
Q 024529           81 LDSRIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      +|-+++|+|+.||||||+.+.|+..
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~   27 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQER   27 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            5678999999999999999999764

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.87  E-value=0.00053  Score=56.31  Aligned_cols=21  Identities=33%  Similarity=0.471  Sum_probs=19.1

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q 024529           84 RIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      +++|+|+.||||||+.+.|+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999999964

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=96.85  E-value=0.00054  Score=52.84  Aligned_cols=23  Identities=22%  Similarity=0.530  Sum_probs=20.7

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKKR   25 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998754

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=96.84  E-value=0.00057  Score=53.69  Aligned_cols=23  Identities=30%  Similarity=0.660  Sum_probs=20.7

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        11 ~i~v~G~~~~GKssl~~~l~~~~   33 (181)
T 3tw8_B           11 KLLIIGDSGVGKSSLLLRFADNT   33 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHCSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998753

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.84  E-value=0.00058  Score=56.79  Aligned_cols=26  Identities=27%  Similarity=0.332  Sum_probs=21.7

Q ss_pred             eCCcEEEEECCCCchHHHHHHHHhCC
Q 024529           80 DLDSRIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++-+++|+|+.||||||+.+.|+..
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~~   30 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITTH   30 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHHH
Confidence            35678999999999999999999853

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.84  E-value=0.00059  Score=54.71  Aligned_cols=22  Identities=36%  Similarity=0.362  Sum_probs=20.0

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      +++|.|+.||||||+.+.|+..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~   23 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEY   23 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999764

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.83  E-value=0.00054  Score=54.02  Aligned_cols=23  Identities=35%  Similarity=0.485  Sum_probs=20.4

Q ss_pred             cEEEEECCCCchHHHHHHHHhCC
Q 024529           83 SRIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        83 e~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .+++|+|+.||||||+.+.|+..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~   25 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARA   25 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999999753

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=96.83  E-value=0.0005  Score=52.97  Aligned_cols=22  Identities=27%  Similarity=0.605  Sum_probs=20.1

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++++|+.|+|||||++.+.+-
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999999875

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=96.81  E-value=0.00082  Score=52.78  Aligned_cols=25  Identities=24%  Similarity=0.356  Sum_probs=22.1

Q ss_pred             CCcEEEEECCCCchHHHHHHHHhCC
Q 024529           81 LDSRIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      +.-.++|+|+.|+|||||++.+.+-
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4457999999999999999999874

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=96.81  E-value=0.0063  Score=64.43  Aligned_cols=30  Identities=20%  Similarity=0.397  Sum_probs=26.8

Q ss_pred             EeCCcEEEEECCCCchHHHHHHHHhCCCCC
Q 024529           79 IDLDSRIAMVGPNGIGKSTILKLIAGELQP  108 (266)
Q Consensus        79 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p  108 (266)
                      +++|+++.|.||+|+|||||+..++.....
T Consensus       729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~  758 (1706)
T 3cmw_A          729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQR  758 (1706)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             cCCCceEEEECCCCCCcHHHHHHHHHHHHH
Confidence            899999999999999999999999875443

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=96.81  E-value=0.0006  Score=52.66  Aligned_cols=22  Identities=23%  Similarity=0.552  Sum_probs=19.8

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|+.|+|||||++.+.+-
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999998754

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=96.80  E-value=0.00059  Score=52.74  Aligned_cols=22  Identities=32%  Similarity=0.595  Sum_probs=20.1

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|+.|+|||||++.+.+-
T Consensus         6 ~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            6 KVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999864

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.80  E-value=0.00069  Score=53.22  Aligned_cols=22  Identities=36%  Similarity=0.450  Sum_probs=19.9

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      +++|.|+.||||||+.+.|+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRS   23 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999763

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.80  E-value=0.00077  Score=54.79  Aligned_cols=25  Identities=32%  Similarity=0.516  Sum_probs=21.7

Q ss_pred             CCcEEEEECCCCchHHHHHHHHhCC
Q 024529           81 LDSRIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .+-+++|+|+.||||||+.+.|+..
T Consensus        19 ~~~~I~l~G~~GsGKST~a~~La~~   43 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQAVKLAEK   43 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3458999999999999999999753

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=96.80  E-value=0.00062  Score=52.92  Aligned_cols=23  Identities=26%  Similarity=0.616  Sum_probs=20.8

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            58999999999999999998764

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.80  E-value=0.00066  Score=55.82  Aligned_cols=22  Identities=27%  Similarity=0.406  Sum_probs=19.5

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      +++|+|+.||||||+.+.|+.-
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEK   23 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4889999999999999999753

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=96.79  E-value=0.00062  Score=52.99  Aligned_cols=22  Identities=14%  Similarity=0.472  Sum_probs=20.2

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|+.|+|||||++.+.+-
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5899999999999999999865

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=96.79  E-value=0.00059  Score=54.63  Aligned_cols=23  Identities=26%  Similarity=0.566  Sum_probs=21.1

Q ss_pred             cEEEEECCCCchHHHHHHHHhCC
Q 024529           83 SRIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        83 e~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      =.++|+|+.|+|||||++.+.+-
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           24 PEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999985

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=96.78  E-value=0.0006  Score=54.33  Aligned_cols=23  Identities=30%  Similarity=0.582  Sum_probs=21.2

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        25 ~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           25 EVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCc
Confidence            68999999999999999998864

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=96.77  E-value=0.00065  Score=53.40  Aligned_cols=23  Identities=17%  Similarity=0.624  Sum_probs=20.5

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .++|+|+.|||||||++.+.+-.
T Consensus        10 ~i~v~G~~~~GKSsli~~l~~~~   32 (182)
T 1ky3_A           10 KVIILGDSGVGKTSLMHRYVNDK   32 (182)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            58999999999999999998753

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.77  E-value=0.00065  Score=52.69  Aligned_cols=23  Identities=22%  Similarity=0.479  Sum_probs=20.3

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            48999999999999999998653

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=96.76  E-value=0.00067  Score=52.55  Aligned_cols=22  Identities=23%  Similarity=0.549  Sum_probs=20.0

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|+.|+|||||++.+.+-
T Consensus         5 ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4899999999999999999864

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.76  E-value=0.00062  Score=56.33  Aligned_cols=25  Identities=24%  Similarity=0.304  Sum_probs=21.7

Q ss_pred             CCcEEEEECCCCchHHHHHHHHhCC
Q 024529           81 LDSRIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .+-++.|+|+.||||||+.+.|+..
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~   28 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTK   28 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4567999999999999999999753

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.75  E-value=0.00068  Score=54.21  Aligned_cols=24  Identities=25%  Similarity=0.321  Sum_probs=21.1

Q ss_pred             CcEEEEECCCCchHHHHHHHHhCC
Q 024529           82 DSRIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        82 Ge~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      ..+++|+|+.||||||+.+.|+..
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~~   29 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999999753

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.75  E-value=0.00045  Score=54.67  Aligned_cols=23  Identities=39%  Similarity=0.585  Sum_probs=20.5

Q ss_pred             CcEEEEECCCCchHHHHHHHHhC
Q 024529           82 DSRIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        82 Ge~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      .=.++|+|++|+|||||++.+.+
T Consensus        18 ~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           18 ELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTCC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhc
Confidence            34799999999999999999985

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.75  E-value=0.00085  Score=52.87  Aligned_cols=22  Identities=23%  Similarity=0.421  Sum_probs=20.5

Q ss_pred             cEEEEECCCCchHHHHHHHHhC
Q 024529           83 SRIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        83 e~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      ++++|+|+.||||||+.+.|+.
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999975

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=96.75  E-value=0.00062  Score=52.90  Aligned_cols=23  Identities=30%  Similarity=0.627  Sum_probs=20.6

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFVEDK   27 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            48999999999999999998753

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=96.75  E-value=0.00068  Score=53.87  Aligned_cols=23  Identities=30%  Similarity=0.576  Sum_probs=20.8

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGKK   25 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCcC
Confidence            47899999999999999999864

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=96.74  E-value=0.0007  Score=53.12  Aligned_cols=22  Identities=23%  Similarity=0.644  Sum_probs=20.1

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|+.|+|||||++.+.+-
T Consensus         9 ~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            9 KVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999864

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.74  E-value=0.00075  Score=54.86  Aligned_cols=24  Identities=29%  Similarity=0.351  Sum_probs=20.9

Q ss_pred             CcEEEEECCCCchHHHHHHHHhCC
Q 024529           82 DSRIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        82 Ge~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      ..+++|+|+.||||||+.+.|+..
T Consensus        15 ~~~I~l~G~~GsGKsT~~~~L~~~   38 (203)
T 1ukz_A           15 VSVIFVLGGPGAGKGTQCEKLVKD   38 (203)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            347999999999999999999743

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.74  E-value=0.00088  Score=55.28  Aligned_cols=27  Identities=15%  Similarity=0.236  Sum_probs=23.8

Q ss_pred             CCcEEEEECCCCchHHHHHHHHhCCCC
Q 024529           81 LDSRIAMVGPNGIGKSTILKLIAGELQ  107 (266)
Q Consensus        81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~  107 (266)
                      .+..+.|.||+|+|||||++.++....
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~   77 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARAN   77 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            578899999999999999999987543

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.73  E-value=0.00071  Score=54.10  Aligned_cols=22  Identities=41%  Similarity=0.539  Sum_probs=20.0

Q ss_pred             cEEEEECCCCchHHHHHHHHhC
Q 024529           83 SRIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        83 e~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      -+++|+|+.||||||+.+.|+.
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999975

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=96.72  E-value=0.00067  Score=53.29  Aligned_cols=22  Identities=27%  Similarity=0.539  Sum_probs=20.3

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|+.|+|||||++.+.+-
T Consensus        11 ~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           11 KLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999875

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=96.72  E-value=0.0008  Score=53.66  Aligned_cols=24  Identities=38%  Similarity=0.506  Sum_probs=21.6

Q ss_pred             EEEEECCCCchHHHHHHHHhCCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGELQ  107 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~~  107 (266)
                      .++|+|+.|+|||||++.+.|...
T Consensus        16 ki~vvG~~~~GKssL~~~l~~~~~   39 (198)
T 3t1o_A           16 KIVYYGPGLSGKTTNLKWIYSKVP   39 (198)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhhcc
Confidence            589999999999999999998654

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.70  E-value=0.00086  Score=54.79  Aligned_cols=23  Identities=30%  Similarity=0.523  Sum_probs=20.7

Q ss_pred             cEEEEECCCCchHHHHHHHHhCC
Q 024529           83 SRIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        83 e~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      -+++|+|+.||||||+.+.|+..
T Consensus        13 ~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           13 MVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            47999999999999999999853

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=96.69  E-value=0.00094  Score=52.43  Aligned_cols=23  Identities=26%  Similarity=0.476  Sum_probs=20.6

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         8 ki~v~G~~~~GKssl~~~l~~~~   30 (178)
T 2hxs_A            8 KIVVLGDGASGKTSLTTCFAQET   30 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHGGG
T ss_pred             EEEEECcCCCCHHHHHHHHHhCc
Confidence            58999999999999999998753

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=96.69  E-value=0.0008  Score=53.90  Aligned_cols=22  Identities=23%  Similarity=0.705  Sum_probs=20.2

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|+.|+|||||++.+.+-
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           27 KVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            5899999999999999999874

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=96.69  E-value=0.00081  Score=52.13  Aligned_cols=22  Identities=18%  Similarity=0.513  Sum_probs=19.9

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|+.|+|||||++.+.+-
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999863

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.69  E-value=0.00092  Score=57.01  Aligned_cols=25  Identities=36%  Similarity=0.304  Sum_probs=22.1

Q ss_pred             CCcEEEEECCCCchHHHHHHHHhCC
Q 024529           81 LDSRIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      ++.++.|+|++||||||+.+.|+..
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~   27 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKI   27 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence            4568999999999999999999853

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=96.69  E-value=0.00082  Score=53.26  Aligned_cols=22  Identities=27%  Similarity=0.632  Sum_probs=20.2

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|+.|+|||||++.+.+-
T Consensus         6 ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999864

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.68  E-value=0.00087  Score=56.75  Aligned_cols=23  Identities=26%  Similarity=0.251  Sum_probs=20.6

Q ss_pred             cEEEEECCCCchHHHHHHHHhCC
Q 024529           83 SRIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        83 e~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      -+++|.|+.||||||+.+.|+..
T Consensus        23 ~iI~I~G~~GSGKST~a~~L~~~   45 (252)
T 1uj2_A           23 FLIGVSGGTASGKSSVCAKIVQL   45 (252)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999999763

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=96.67  E-value=0.00084  Score=52.27  Aligned_cols=23  Identities=39%  Similarity=0.562  Sum_probs=20.4

Q ss_pred             cEEEEECCCCchHHHHHHHHhCC
Q 024529           83 SRIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        83 e~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      =.++|+|+.|+|||||++.+.+-
T Consensus         8 ~~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            8 MRILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999999763

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=96.67  E-value=0.00083  Score=53.32  Aligned_cols=22  Identities=23%  Similarity=0.539  Sum_probs=20.2

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|+.|+|||||++.+.+-
T Consensus        13 ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           13 KFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999864

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=96.67  E-value=0.00085  Score=53.60  Aligned_cols=23  Identities=22%  Similarity=0.523  Sum_probs=20.9

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         9 ki~v~G~~~~GKSsli~~l~~~~   31 (208)
T 3clv_A            9 KTVLLGESSVGKSSIVLRLTKDT   31 (208)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            58999999999999999999863

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=96.66  E-value=0.00086  Score=57.22  Aligned_cols=23  Identities=17%  Similarity=0.401  Sum_probs=21.3

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .++|+|+.|||||||++.|+|..
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~~   25 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNAN   25 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            58999999999999999999974

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=96.66  E-value=0.00075  Score=54.66  Aligned_cols=22  Identities=36%  Similarity=0.712  Sum_probs=20.2

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|++|+|||||++.+.|.
T Consensus        25 ki~vvG~~~vGKSsLi~~l~~~   46 (195)
T 3cbq_A           25 KVMLVGESGVGKSTLAGTFGGL   46 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHTCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            6899999999999999999764

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.66  E-value=0.00069  Score=55.01  Aligned_cols=26  Identities=35%  Similarity=0.543  Sum_probs=22.7

Q ss_pred             cEEEEECCCCchHHHHHHHHhCCCCC
Q 024529           83 SRIAMVGPNGIGKSTILKLIAGELQP  108 (266)
Q Consensus        83 e~~~l~G~nGsGKSTLl~~l~Gl~~p  108 (266)
                      ..+.|.||+|+|||||++.|+.....
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~   80 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAK   80 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            67899999999999999999876543

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=96.65  E-value=0.00089  Score=51.83  Aligned_cols=21  Identities=48%  Similarity=0.588  Sum_probs=19.3

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q 024529           84 RIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      .++|+|+.|+|||||++.+.+
T Consensus         2 ki~~~G~~~~GKssl~~~l~~   22 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKL   22 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            479999999999999999976

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.62  E-value=0.001  Score=55.23  Aligned_cols=22  Identities=41%  Similarity=0.662  Sum_probs=19.7

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      +++|.|+.||||||+.+.|+-.
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~   23 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDK   23 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999999753

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=96.62  E-value=0.001  Score=58.18  Aligned_cols=22  Identities=41%  Similarity=0.640  Sum_probs=20.9

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      +++|+|++|+|||||++.|.|.
T Consensus         9 ~V~ivG~~nvGKSTLln~l~g~   30 (301)
T 1wf3_A            9 FVAIVGKPNVGKSTLLNNLLGV   30 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6999999999999999999985

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=96.62  E-value=0.00094  Score=53.25  Aligned_cols=22  Identities=27%  Similarity=0.605  Sum_probs=20.2

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|+.|+|||||++.+++-
T Consensus        23 ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           23 KLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5899999999999999999865

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=96.62  E-value=0.00095  Score=52.68  Aligned_cols=22  Identities=32%  Similarity=0.595  Sum_probs=20.1

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|+.|+|||||++.+.+-
T Consensus        20 ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           20 KVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            5899999999999999999864

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=96.61  E-value=0.00097  Score=52.24  Aligned_cols=23  Identities=26%  Similarity=0.543  Sum_probs=20.6

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           17 KYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58999999999999999998753

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=96.60  E-value=0.00089  Score=52.46  Aligned_cols=22  Identities=14%  Similarity=0.525  Sum_probs=20.0

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|+.|+|||||++.+.+-
T Consensus        16 ~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           16 KLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999864

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.60  E-value=0.001  Score=52.37  Aligned_cols=23  Identities=26%  Similarity=0.583  Sum_probs=20.6

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        12 ~i~v~G~~~~GKssli~~l~~~~   34 (180)
T 2g6b_A           12 KVMLVGDSGVGKTCLLVRFKDGA   34 (180)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            58999999999999999998743

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=96.59  E-value=0.00074  Score=55.40  Aligned_cols=24  Identities=29%  Similarity=0.522  Sum_probs=21.8

Q ss_pred             cEEEEECCCCchHHHHHHHHhCCC
Q 024529           83 SRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        83 e~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      -.++|+|+.|+|||||++.|.|-.
T Consensus        30 ~~i~v~G~~~~GKSslin~l~~~~   53 (223)
T 4dhe_A           30 PEIAFAGRSNAGKSTAINVLCNQK   53 (223)
T ss_dssp             CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCCC
Confidence            368999999999999999999864

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.58  E-value=0.00052  Score=59.75  Aligned_cols=25  Identities=24%  Similarity=0.340  Sum_probs=18.8

Q ss_pred             CCcEEEEECCCCchHHHHHHHHhCC
Q 024529           81 LDSRIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      ++-+++|.||+||||||+.+.|+..
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~   28 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQI   28 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHH
Confidence            3458999999999999999999763

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.58  E-value=0.001  Score=57.56  Aligned_cols=22  Identities=23%  Similarity=0.446  Sum_probs=20.2

Q ss_pred             cEEEEECCCCchHHHHHHHHhC
Q 024529           83 SRIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        83 e~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      -+++|+|+.||||||+.+.|+.
T Consensus        76 ~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           76 YVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999983

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=96.58  E-value=0.0022  Score=56.48  Aligned_cols=34  Identities=18%  Similarity=0.280  Sum_probs=29.6

Q ss_pred             cceeeceEEEeCCcEEEEECCCCchHHHHHHHHhC
Q 024529           70 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        70 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      ..++...+.+ .|.-++|+|+||+|||||...+.+
T Consensus       133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~  166 (314)
T 1ko7_A          133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK  166 (314)
T ss_dssp             EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence            4577877888 788999999999999999998886

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=96.58  E-value=0.0012  Score=52.43  Aligned_cols=26  Identities=42%  Similarity=0.599  Sum_probs=22.3

Q ss_pred             CCcEEEEECCCCchHHHHHHHHhCCC
Q 024529           81 LDSRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      +.=.++|+|+.|+|||||++.+.+-.
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~~~   42 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNGED   42 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence            34478999999999999999998753

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.57  E-value=0.0012  Score=55.72  Aligned_cols=24  Identities=29%  Similarity=0.350  Sum_probs=21.5

Q ss_pred             CCcEEEEECCCCchHHHHHHHHhC
Q 024529           81 LDSRIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        81 ~Ge~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      ++-+++|+||.||||||+.+.|+-
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999974

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=96.56  E-value=0.0011  Score=52.12  Aligned_cols=23  Identities=22%  Similarity=0.502  Sum_probs=20.6

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        14 ki~v~G~~~~GKSsli~~l~~~~   36 (181)
T 2efe_B           14 KLVLLGDVGAGKSSLVLRFVKDQ   36 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            58999999999999999998753

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=96.56  E-value=0.016  Score=62.17  Aligned_cols=133  Identities=14%  Similarity=0.161  Sum_probs=74.9

Q ss_pred             EeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHH
Q 024529           79 IDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHL  158 (266)
Q Consensus        79 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  158 (266)
                      +++|+++.|.||+|+|||||...++.......+.        +.|+.-+.      ......                 +
T Consensus       380 l~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~--------vlyis~E~------s~~~~~-----------------a  428 (2050)
T 3cmu_A          380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKT--------CAFIDAEH------ALDPIY-----------------A  428 (2050)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCC--------EEEECTTS------CCCHHH-----------------H
T ss_pred             ccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCe--------EEEEEcCC------CHHHHH-----------------H
Confidence            8899999999999999999988776543322222        22332211      111110                 1


Q ss_pred             HhcCCCc--ccccCCCCCCChHHHHHHHHHHHHc--cCCCEEEEeCCCCCCC-H-------------HHH--HHHHHH--
Q 024529          159 GSFGVTG--NLALQPMYTLSGGQKSRVAFAKITF--KKPHIILLDEPSNHLD-L-------------DAV--EALIQG--  216 (266)
Q Consensus       159 ~~~~l~~--~~~~~~~~~LSgGqkqRv~lAral~--~~p~lllLDEPt~~LD-~-------------~~~--~~l~~~--  216 (266)
                      +.+|++.  .....   ..+..  +-+.+++.++  .+|+++++|.-++-.. .             ..+  ...+..  
T Consensus       429 ~~lGvd~~~L~I~~---~~~~e--~il~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~  503 (2050)
T 3cmu_A          429 RKLGVDIDNLLCSQ---PDTGE--QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLA  503 (2050)
T ss_dssp             HHTTCCTTTCEEEC---CSSHH--HHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHH
T ss_pred             HHcCCCHHHeEEeC---CCCHH--HHHHHHHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHH
Confidence            2233321  01111   12332  3456666664  5799999999887652 1             111  122233  


Q ss_pred             --HhhcCCEEEEEecCHH----------------HHHhhcCEEEEEeCC
Q 024529          217 --LVLFQGGILMVSHDEH----------------LISGSVEELWVVSEG  247 (266)
Q Consensus       217 --l~~~~~tiiivtHd~~----------------~~~~~~d~i~~l~~G  247 (266)
                        +++.+.+||+++|-..                .+..++|.++.|...
T Consensus       504 ~lake~~i~VIlinQl~~~vg~~~g~p~~psGg~ale~~ADv~l~L~R~  552 (2050)
T 3cmu_A          504 GNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRI  552 (2050)
T ss_dssp             HHHHTTTCEEEEEECCEECTTCCSSCCEECSSHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHcCCeEEEEeecccccccccCCCcCCCCcchhhhhCCEEEEEEec
Confidence              3566789999988422                356678888887543

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.56  E-value=0.0011  Score=54.26  Aligned_cols=23  Identities=30%  Similarity=0.663  Sum_probs=21.1

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        14 ~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           14 SIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999998864

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=96.55  E-value=0.0013  Score=56.21  Aligned_cols=23  Identities=22%  Similarity=0.612  Sum_probs=21.2

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .++|+|+.|||||||++.++|..
T Consensus         7 kI~lvG~~nvGKTsL~n~l~g~~   29 (258)
T 3a1s_A            7 KVALAGCPNVGKTSLFNALTGTK   29 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            58999999999999999999864

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=96.55  E-value=0.0011  Score=56.97  Aligned_cols=23  Identities=30%  Similarity=0.495  Sum_probs=20.5

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .++|+|++|+|||||++.|.|-.
T Consensus        10 ~I~vvG~~g~GKSTLin~L~~~~   32 (274)
T 3t5d_A           10 TLMVVGESGLGKSTLINSLFLTD   32 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHSSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            48999999999999999988753

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=96.54  E-value=0.001  Score=52.68  Aligned_cols=22  Identities=27%  Similarity=0.554  Sum_probs=20.1

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|+.|+|||||++.+.+-
T Consensus        12 ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A           12 KFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999864

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=96.53  E-value=0.001  Score=52.90  Aligned_cols=22  Identities=32%  Similarity=0.646  Sum_probs=20.1

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|+.|+|||||++.+.+-
T Consensus         9 ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            9 KIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5799999999999999999875

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=96.53  E-value=0.0013  Score=57.66  Aligned_cols=22  Identities=41%  Similarity=0.688  Sum_probs=21.1

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      +++|+|+.|+|||||++.|.|.
T Consensus        12 ~v~ivG~~nvGKSTLin~l~g~   33 (308)
T 3iev_A           12 YVAIVGKPNVGKSTLLNNLLGT   33 (308)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            8999999999999999999985

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=96.53  E-value=0.0012  Score=53.36  Aligned_cols=23  Identities=17%  Similarity=0.613  Sum_probs=20.7

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~~   32 (207)
T 1vg8_A           10 KVIILGDSGVGKTSLMNQYVNKK   32 (207)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            58999999999999999998753

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=96.53  E-value=0.0012  Score=53.27  Aligned_cols=22  Identities=32%  Similarity=0.595  Sum_probs=20.0

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|+.|+|||||++.+.+-
T Consensus        16 ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           16 KVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999999864

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=96.53  E-value=0.0012  Score=53.34  Aligned_cols=22  Identities=41%  Similarity=0.880  Sum_probs=20.2

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|++|+|||||++.+.|.
T Consensus         8 kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            8 RVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999863

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.52  E-value=0.0015  Score=51.50  Aligned_cols=26  Identities=23%  Similarity=0.521  Sum_probs=22.3

Q ss_pred             CCcEEEEECCCCchHHHHHHHHhCCC
Q 024529           81 LDSRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .+..+.|.||.|+|||||++.++..+
T Consensus        42 ~~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           42 TKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHH
Confidence            45678999999999999999998654

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=96.52  E-value=0.001  Score=59.94  Aligned_cols=22  Identities=27%  Similarity=0.563  Sum_probs=20.3

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|++|+|||||++.|++.
T Consensus         3 ~v~IVG~pnvGKSTL~n~L~~~   24 (368)
T 2dby_A            3 AVGIVGLPNVGKSTLFNALTRA   24 (368)
T ss_dssp             SEEEECCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4799999999999999999985

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=96.51  E-value=0.0012  Score=52.66  Aligned_cols=23  Identities=22%  Similarity=0.508  Sum_probs=20.6

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (189)
T 2gf9_A           24 KLLLIGNSSVGKTSFLFRYADDS   46 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58999999999999999998753

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=96.51  E-value=0.0016  Score=51.46  Aligned_cols=22  Identities=27%  Similarity=0.545  Sum_probs=19.9

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|+.|+|||||++.+.+-
T Consensus        20 ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           20 KLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999999864

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=96.51  E-value=0.0013  Score=55.76  Aligned_cols=23  Identities=39%  Similarity=0.495  Sum_probs=21.1

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .++|+|+.|+|||||++.|.|-.
T Consensus        24 ~I~lvG~~g~GKStl~n~l~~~~   46 (260)
T 2xtp_A           24 RIILVGKTGTGKSAAGNSILRKQ   46 (260)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999999854

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=96.50  E-value=0.0013  Score=52.77  Aligned_cols=23  Identities=17%  Similarity=0.680  Sum_probs=19.8

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        28 ki~vvG~~~~GKSsLi~~l~~~~   50 (192)
T 2il1_A           28 QVIIIGSRGVGKTSLMERFTDDT   50 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHCC--
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            48999999999999999998753

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=96.50  E-value=0.0015  Score=52.73  Aligned_cols=23  Identities=26%  Similarity=0.521  Sum_probs=20.7

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~~   32 (203)
T 1zbd_A           10 KILIIGNSSVGKTSFLFRYADDS   32 (203)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998753

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=96.49  E-value=0.0016  Score=51.92  Aligned_cols=23  Identities=30%  Similarity=0.661  Sum_probs=20.7

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        18 ki~v~G~~~~GKSsli~~l~~~~   40 (196)
T 3tkl_A           18 KLLLIGDSGVGKSCLLLRFADDT   40 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            48999999999999999998753

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=96.49  E-value=0.0012  Score=53.08  Aligned_cols=23  Identities=26%  Similarity=0.612  Sum_probs=20.5

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        25 ki~vvG~~~~GKSsli~~l~~~~   47 (192)
T 2fg5_A           25 KVCLLGDTGVGKSSIVCRFVQDH   47 (192)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            58999999999999999998643

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=96.49  E-value=0.0013  Score=56.56  Aligned_cols=23  Identities=26%  Similarity=0.572  Sum_probs=21.2

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .++|+|..|||||||++.|+|..
T Consensus         5 ~I~lvG~~n~GKSTLin~l~g~~   27 (274)
T 3i8s_A            5 TIGLIGNPNSGKTTLFNQLTGSR   27 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999999964

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.49  E-value=0.0013  Score=54.10  Aligned_cols=22  Identities=32%  Similarity=0.474  Sum_probs=19.6

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|+.||||||+.+.|+-.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEK   23 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999753

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=96.48  E-value=0.0011  Score=53.05  Aligned_cols=23  Identities=22%  Similarity=0.375  Sum_probs=21.0

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .++|+|+.|+|||||++.+.+..
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           23 HVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             EEEEEECTTSSHHHHHHHTSCGG
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998764

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=96.48  E-value=0.0013  Score=51.85  Aligned_cols=22  Identities=23%  Similarity=0.451  Sum_probs=19.8

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|+.|+|||||++.+.+-
T Consensus         7 ~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            7 KCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999753

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=96.48  E-value=0.0015  Score=52.38  Aligned_cols=22  Identities=27%  Similarity=0.531  Sum_probs=20.3

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|+.|+|||||++.+.+-
T Consensus        19 ki~v~G~~~~GKSsl~~~l~~~   40 (199)
T 4bas_A           19 QVVMCGLDNSGKTTIINQVKPA   40 (199)
T ss_dssp             EEEEECCTTSCHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999884

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=96.47  E-value=0.0015  Score=55.91  Aligned_cols=30  Identities=37%  Similarity=0.599  Sum_probs=22.9

Q ss_pred             cEEEEECCCCchHHHHHHHHhCCCCCCceE
Q 024529           83 SRIAMVGPNGIGKSTILKLIAGELQPSSGT  112 (266)
Q Consensus        83 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~  112 (266)
                      -.++++|.+|+|||||++.|.|......|.
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~  129 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA  129 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence            489999999999999999999976544443

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.47  E-value=0.0012  Score=52.85  Aligned_cols=22  Identities=27%  Similarity=0.601  Sum_probs=20.2

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|+.|+|||||++.+.+-
T Consensus        10 ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A           10 RVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            6899999999999999999873

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.46  E-value=0.0015  Score=52.08  Aligned_cols=23  Identities=30%  Similarity=0.499  Sum_probs=20.7

Q ss_pred             cEEEEECCCCchHHHHHHHHhCC
Q 024529           83 SRIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        83 e~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      =.++|+|+.|+|||||++.+.+-
T Consensus        17 ~~i~v~G~~~~GKssl~~~l~~~   39 (187)
T 1zj6_A           17 HKVIIVGLDNAGKTTILYQFSMN   39 (187)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTT
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999999864

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=96.46  E-value=0.0016  Score=54.03  Aligned_cols=27  Identities=33%  Similarity=0.486  Sum_probs=23.9

Q ss_pred             CCcEEEEECCCCchHHHHHHHHhCCCC
Q 024529           81 LDSRIAMVGPNGIGKSTILKLIAGELQ  107 (266)
Q Consensus        81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~  107 (266)
                      +|-+++|.|+.||||||+++.|+..+.
T Consensus         5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~   31 (213)
T 4edh_A            5 TGLFVTLEGPEGAGKSTNRDYLAERLR   31 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            588999999999999999999976553

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=96.45  E-value=0.0015  Score=52.94  Aligned_cols=22  Identities=27%  Similarity=0.569  Sum_probs=19.7

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|+.|+|||||++.+.+-
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           27 KFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHC-
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            5899999999999999999874

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=96.45  E-value=0.0016  Score=52.41  Aligned_cols=24  Identities=33%  Similarity=0.531  Sum_probs=21.5

Q ss_pred             EEEEECCCCchHHHHHHHHhCCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGELQ  107 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~~  107 (266)
                      .++|+|+.|+|||||++.+.+-..
T Consensus        22 ki~~vG~~~vGKTsLi~~l~~~~~   45 (196)
T 3llu_A           22 RILLMGLRRSGKSSIQKVVFHKMS   45 (196)
T ss_dssp             EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhcCC
Confidence            689999999999999999998544

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=96.45  E-value=0.0016  Score=54.00  Aligned_cols=22  Identities=23%  Similarity=0.582  Sum_probs=20.6

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|+.|+|||||++.+.+-
T Consensus        31 kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           31 TIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999885

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.45  E-value=0.0013  Score=52.73  Aligned_cols=23  Identities=22%  Similarity=0.515  Sum_probs=20.7

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        25 ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           25 KLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHhcCC
Confidence            58999999999999999998754

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=96.44  E-value=0.0015  Score=52.21  Aligned_cols=22  Identities=18%  Similarity=0.457  Sum_probs=19.9

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|+.|+|||||++.+.+-
T Consensus        22 ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           22 KIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4899999999999999999864

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=96.44  E-value=0.0013  Score=53.25  Aligned_cols=23  Identities=13%  Similarity=0.367  Sum_probs=20.9

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        26 ki~vvG~~~~GKSsli~~l~~~~   48 (201)
T 3oes_A           26 KVVILGYRCVGKTSLAHQFVEGE   48 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            68999999999999999998753

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=96.44  E-value=0.0015  Score=52.37  Aligned_cols=23  Identities=26%  Similarity=0.554  Sum_probs=20.6

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~~   45 (191)
T 2a5j_A           23 KYIIIGDTGVGKSCLLLQFTDKR   45 (191)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            58999999999999999998753

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.44  E-value=0.0016  Score=53.73  Aligned_cols=25  Identities=28%  Similarity=0.478  Sum_probs=21.7

Q ss_pred             CCcEEEEECCCCchHHHHHHHHhCC
Q 024529           81 LDSRIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      +|-+++|+|+.||||||+.+.|+..
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~~   28 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKKE   28 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHH
Confidence            3567999999999999999999754

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=96.42  E-value=0.0013  Score=51.84  Aligned_cols=22  Identities=23%  Similarity=0.450  Sum_probs=20.1

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|+.|+|||||++.+.+-
T Consensus         9 ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            9 RLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEECCGGGCHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999864

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=96.42  E-value=0.0014  Score=55.13  Aligned_cols=27  Identities=30%  Similarity=0.411  Sum_probs=21.3

Q ss_pred             eCCcEEEEECCCCchHHHHHHHHhCCC
Q 024529           80 DLDSRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .+|-++.|.|+.||||||+.+.|+..+
T Consensus        23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l   49 (227)
T 3v9p_A           23 ARGKFITFEGIDGAGKTTHLQWFCDRL   49 (227)
T ss_dssp             CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            478999999999999999999998654

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=96.42  E-value=0.0014  Score=51.79  Aligned_cols=21  Identities=29%  Similarity=0.513  Sum_probs=19.4

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q 024529           84 RIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      .++|+|+.|+|||||++.+.+
T Consensus         8 ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            8 KIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHc
Confidence            589999999999999999984

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=96.41  E-value=0.0015  Score=52.34  Aligned_cols=22  Identities=27%  Similarity=0.549  Sum_probs=20.4

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|+.|+|||||++.+.+-
T Consensus        25 ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           25 KIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            5899999999999999999875

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=96.41  E-value=0.0014  Score=52.04  Aligned_cols=23  Identities=30%  Similarity=0.462  Sum_probs=20.7

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        23 ~i~v~G~~~~GKSsli~~l~~~~   45 (181)
T 2h17_A           23 KVIIVGLDNAGKTTILYQFSMNE   45 (181)
T ss_dssp             EEEEEEETTSSHHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57999999999999999999753

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.41  E-value=0.0014  Score=53.53  Aligned_cols=22  Identities=23%  Similarity=0.659  Sum_probs=19.7

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|+.|+|||||++.+.+-
T Consensus        28 ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           28 KIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            5899999999999999988754

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=96.41  E-value=0.0016  Score=51.33  Aligned_cols=23  Identities=22%  Similarity=0.395  Sum_probs=20.6

Q ss_pred             cEEEEECCCCchHHHHHHHHhCC
Q 024529           83 SRIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        83 e~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      =.++|+|+.|+|||||++.+.+-
T Consensus         9 ~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            9 IKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999999864

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=96.40  E-value=0.0019  Score=52.75  Aligned_cols=23  Identities=26%  Similarity=0.511  Sum_probs=20.8

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        27 ki~vvG~~~~GKSsLi~~l~~~~   49 (217)
T 2f7s_A           27 KLLALGDSGVGKTTFLYRYTDNK   49 (217)
T ss_dssp             EEEEESCTTSSHHHHHHHHHCSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            48999999999999999999754

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=96.39  E-value=0.0016  Score=52.07  Aligned_cols=22  Identities=32%  Similarity=0.522  Sum_probs=20.0

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|+.|+|||||++.+.+-
T Consensus        24 ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           24 ELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999864

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.38  E-value=0.0014  Score=57.40  Aligned_cols=28  Identities=29%  Similarity=0.437  Sum_probs=23.7

Q ss_pred             CCcEEEEECCCCchHHHHHHHHhCCCCC
Q 024529           81 LDSRIAMVGPNGIGKSTILKLIAGELQP  108 (266)
Q Consensus        81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p  108 (266)
                      .+..+.|.||+|+|||||++.|++...+
T Consensus        36 ~~~~lll~G~~GtGKT~la~~i~~~~~~   63 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLLQAAGNEAKK   63 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence            3467999999999999999999986543

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.38  E-value=0.0016  Score=52.28  Aligned_cols=22  Identities=27%  Similarity=0.588  Sum_probs=20.2

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|+.|+|||||++.+.+-
T Consensus        30 ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           30 KLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6899999999999999999864

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=96.38  E-value=0.0019  Score=51.95  Aligned_cols=23  Identities=17%  Similarity=0.437  Sum_probs=20.2

Q ss_pred             cEEEEECCCCchHHHHHHHHhCC
Q 024529           83 SRIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        83 e~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      =.++|+|+.|+|||||++.+.+-
T Consensus        21 ~ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           21 VKCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC-
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            36899999999999999999875

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=96.38  E-value=0.0014  Score=53.66  Aligned_cols=24  Identities=17%  Similarity=0.415  Sum_probs=21.1

Q ss_pred             cEEEEECCCCchHHHHHHHHhCCC
Q 024529           83 SRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        83 e~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      -.++|+|+.|||||||++.|++..
T Consensus        31 ~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           31 VAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Confidence            368999999999999999998753

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=96.37  E-value=0.0019  Score=54.57  Aligned_cols=27  Identities=33%  Similarity=0.471  Sum_probs=23.9

Q ss_pred             CCcEEEEECCCCchHHHHHHHHhCCCC
Q 024529           81 LDSRIAMVGPNGIGKSTILKLIAGELQ  107 (266)
Q Consensus        81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~  107 (266)
                      +|.+++|.|++||||||+++.|+..+.
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~   52 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETLQ   52 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            588999999999999999999976543

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=96.37  E-value=0.0017  Score=51.74  Aligned_cols=22  Identities=32%  Similarity=0.730  Sum_probs=20.3

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|+.|+|||||++.+.+-
T Consensus        17 ~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           17 KILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999875

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=96.37  E-value=0.0031  Score=62.75  Aligned_cols=26  Identities=31%  Similarity=0.626  Sum_probs=22.8

Q ss_pred             cEEEEECCCCchHHHHHHHHhCCCCC
Q 024529           83 SRIAMVGPNGIGKSTILKLIAGELQP  108 (266)
Q Consensus        83 e~~~l~G~nGsGKSTLl~~l~Gl~~p  108 (266)
                      ..+.|+||+|+|||+|.+.|+.....
T Consensus       589 ~~vLl~Gp~GtGKT~lA~~la~~~~~  614 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELAKTLAATLFD  614 (854)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            47899999999999999999987644

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=96.36  E-value=0.0017  Score=52.41  Aligned_cols=24  Identities=25%  Similarity=0.448  Sum_probs=21.1

Q ss_pred             cEEEEECCCCchHHHHHHHHhCCC
Q 024529           83 SRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        83 e~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      =.++|+|+.|+|||||++.+.+-.
T Consensus        29 ~ki~v~G~~~~GKSsli~~l~~~~   52 (199)
T 2p5s_A           29 YKIVLAGDAAVGKSSFLMRLCKNE   52 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhCC
Confidence            368999999999999999998753

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.36  E-value=0.0018  Score=55.91  Aligned_cols=22  Identities=32%  Similarity=0.342  Sum_probs=20.1

Q ss_pred             cEEEEECCCCchHHHHHHHHhC
Q 024529           83 SRIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        83 e~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      .++.|+|++||||||+.+.|+-
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999985

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=96.35  E-value=0.0015  Score=52.81  Aligned_cols=22  Identities=27%  Similarity=0.688  Sum_probs=20.2

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|+.|+|||||++.+.+-
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y           10 KLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999874

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=96.35  E-value=0.0017  Score=56.37  Aligned_cols=23  Identities=39%  Similarity=0.621  Sum_probs=21.6

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .++|+|+.|||||||++.|+|..
T Consensus        26 ~I~vvG~~~~GKSTlln~l~g~~   48 (315)
T 1jwy_B           26 QIVVVGSQSSGKSSVLENIVGRD   48 (315)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSC
T ss_pred             eEEEEcCCCCCHHHHHHHHHCCC
Confidence            69999999999999999999974

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=96.34  E-value=0.0019  Score=52.95  Aligned_cols=22  Identities=32%  Similarity=0.706  Sum_probs=19.9

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|+.|+|||||++.+.+-
T Consensus        36 ki~vvG~~~vGKSsli~~l~~~   57 (214)
T 2j1l_A           36 KVVLVGDGGCGKTSLLMVFADG   57 (214)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC-
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5899999999999999999874

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.34  E-value=0.0017  Score=52.56  Aligned_cols=23  Identities=30%  Similarity=0.637  Sum_probs=20.7

Q ss_pred             cEEEEECCCCchHHHHHHHHhCC
Q 024529           83 SRIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        83 e~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      =.++|+|+.|+|||||++.+.+-
T Consensus        21 ~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           21 MKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            36899999999999999999864

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.34  E-value=0.0019  Score=50.89  Aligned_cols=26  Identities=23%  Similarity=0.456  Sum_probs=22.2

Q ss_pred             CCcEEEEECCCCchHHHHHHHHhCCC
Q 024529           81 LDSRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .+..+.|.||.|+|||||++.++...
T Consensus        42 ~~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           42 TKNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHH
Confidence            35678899999999999999998754

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.34  E-value=0.0019  Score=57.53  Aligned_cols=24  Identities=29%  Similarity=0.459  Sum_probs=21.5

Q ss_pred             cEEEEECCCCchHHHHHHHHhCCC
Q 024529           83 SRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        83 e~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .+++|+||+|||||||.+.|+..+
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l   31 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKF   31 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHc
Confidence            379999999999999999998755

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=96.32  E-value=0.0019  Score=51.71  Aligned_cols=22  Identities=27%  Similarity=0.483  Sum_probs=19.7

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|+.|+|||||++.+.+-
T Consensus        23 ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           23 NLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCcHHHHHHHHHhC
Confidence            5899999999999999888764

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=96.32  E-value=0.0021  Score=53.33  Aligned_cols=27  Identities=26%  Similarity=0.417  Sum_probs=23.7

Q ss_pred             CCcEEEEECCCCchHHHHHHHHhCCCC
Q 024529           81 LDSRIAMVGPNGIGKSTILKLIAGELQ  107 (266)
Q Consensus        81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~  107 (266)
                      +|-++.+.|++||||||+++.|+..+.
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~   28 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLE   28 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            488999999999999999999986543

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.32  E-value=0.0024  Score=53.31  Aligned_cols=26  Identities=31%  Similarity=0.496  Sum_probs=22.1

Q ss_pred             CCcEEEEECCCCchHHHHHHHHhCCC
Q 024529           81 LDSRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .+-.+.|+|+.||||||+.+.|+-.+
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~l   40 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKNF   40 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            34679999999999999999998543

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=96.32  E-value=0.0016  Score=53.14  Aligned_cols=22  Identities=32%  Similarity=0.646  Sum_probs=20.5

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|+.|+|||||++.+.+-
T Consensus        30 ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           30 KIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999875

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.31  E-value=0.0017  Score=52.77  Aligned_cols=23  Identities=22%  Similarity=0.501  Sum_probs=20.9

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~~   49 (207)
T 2fv8_A           27 KLVVVGDGACGKTCLLIVFSKDE   49 (207)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSS
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            68999999999999999998753

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=96.30  E-value=0.0018  Score=60.11  Aligned_cols=36  Identities=17%  Similarity=0.349  Sum_probs=30.1

Q ss_pred             ceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCC
Q 024529           71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ  107 (266)
Q Consensus        71 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~  107 (266)
                      +++.+ +.+-+|+.++|+|++|+|||||++.|+....
T Consensus       141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~  176 (473)
T 1sky_E          141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIA  176 (473)
T ss_dssp             HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred             HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence            45555 6777899999999999999999999987543

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=96.29  E-value=0.0026  Score=51.75  Aligned_cols=23  Identities=17%  Similarity=0.235  Sum_probs=20.7

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         9 ki~vvG~~~~GKTsli~~l~~~~   31 (214)
T 2fh5_B            9 AVLFVGLCDSGKTLLFVRLLTGQ   31 (214)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999998754

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.29  E-value=0.0022  Score=58.62  Aligned_cols=27  Identities=26%  Similarity=0.201  Sum_probs=23.5

Q ss_pred             EeCCcEEEEECCCCchHHHHHHHHhCC
Q 024529           79 IDLDSRIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        79 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      -....++.|+|++||||||+.+.|+..
T Consensus       255 ~~~~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          255 SPNPEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             CSSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            346789999999999999999999753

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.28  E-value=0.00064  Score=59.85  Aligned_cols=40  Identities=23%  Similarity=0.330  Sum_probs=30.8

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CEEEEEecCHH
Q 024529          192 KPHIILLDEPSNHLDLDAVEALIQGLVLFQ--GGILMVSHDEH  232 (266)
Q Consensus       192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~tiiivtHd~~  232 (266)
                      ++.++++|| ...+++.....+.+.+.+..  ..+|+++++..
T Consensus       133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~  174 (353)
T 1sxj_D          133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVT  174 (353)
T ss_dssp             SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred             CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchh
Confidence            667999999 78899988888888887653  24667776654

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=96.28  E-value=0.0013  Score=51.91  Aligned_cols=22  Identities=23%  Similarity=0.653  Sum_probs=9.3

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|+.|+|||||++.+.+-
T Consensus        10 ki~v~G~~~~GKssl~~~l~~~   31 (183)
T 2fu5_C           10 KLLLIGDSGVGKTCVLFRFSED   31 (183)
T ss_dssp             EEEEECCCCC------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999865

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=96.28  E-value=0.0019  Score=51.91  Aligned_cols=23  Identities=43%  Similarity=0.505  Sum_probs=20.6

Q ss_pred             cEEEEECCCCchHHHHHHHHhCC
Q 024529           83 SRIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        83 e~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      =.++|+|+.|+|||||++.+.+-
T Consensus        30 ~ki~v~G~~~vGKSsLi~~l~~~   52 (192)
T 2b6h_A           30 MRILMVGLDAAGKTTILYKLKLG   52 (192)
T ss_dssp             EEEEEEESTTSSHHHHHHHHCSS
T ss_pred             cEEEEECCCCCCHHHHHHHHHhC
Confidence            36999999999999999999764

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=96.28  E-value=0.0024  Score=52.76  Aligned_cols=22  Identities=41%  Similarity=0.880  Sum_probs=20.4

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|++|+|||||++.+.|.
T Consensus        39 kVvlvG~~~vGKSSLl~r~~~~   60 (211)
T 2g3y_A           39 RVVLIGEQGVGKSTLANIFAGV   60 (211)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5999999999999999999874

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=96.26  E-value=0.0044  Score=51.49  Aligned_cols=52  Identities=19%  Similarity=0.171  Sum_probs=38.2

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecC----------HHHHHhhcCEEEEEe
Q 024529          192 KPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHD----------EHLISGSVEELWVVS  245 (266)
Q Consensus       192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd----------~~~~~~~~d~i~~l~  245 (266)
                      +.+++++||--- +|+... ++++.+...+..||+.-+|          ...+..+||.|..|+
T Consensus       101 ~~dvViIDEaQF-~~~~~V-~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~  162 (214)
T 2j9r_A          101 EMDVIAIDEVQF-FDGDIV-EVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ  162 (214)
T ss_dssp             SCCEEEECCGGG-SCTTHH-HHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred             CCCEEEEECccc-CCHHHH-HHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence            589999999876 777665 4455555567789998883          344556899998875

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=96.25  E-value=0.0022  Score=52.60  Aligned_cols=25  Identities=52%  Similarity=0.666  Sum_probs=21.7

Q ss_pred             CcEEEEECCCCchHHHHHHHHhCCC
Q 024529           82 DSRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        82 Ge~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      +-+++|+|+.||||||+.+.|+..+
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~   27 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASEL   27 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            4579999999999999999998643

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.22  E-value=0.0023  Score=53.57  Aligned_cols=25  Identities=32%  Similarity=0.554  Sum_probs=22.5

Q ss_pred             CcEEEEECCCCchHHHHHHHHhCCC
Q 024529           82 DSRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        82 Ge~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      |-+++|.|+.||||||+.+.|+..+
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~l   26 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKTY   26 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence            5689999999999999999998655

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=96.22  E-value=0.0023  Score=54.46  Aligned_cols=23  Identities=30%  Similarity=0.655  Sum_probs=21.0

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .++|+|+.|+|||||++.|.|-.
T Consensus        38 ~I~lvG~~g~GKSSLin~l~~~~   60 (262)
T 3def_A           38 TVLVLGKGGVGKSSTVNSLIGEQ   60 (262)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57999999999999999999854

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=96.22  E-value=0.002  Score=52.11  Aligned_cols=23  Identities=22%  Similarity=0.531  Sum_probs=20.6

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~~   49 (201)
T 2gco_A           27 KLVIVGDGACGKTCLLIVFSKDQ   49 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            58999999999999999998743

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=96.22  E-value=0.0026  Score=52.93  Aligned_cols=33  Identities=24%  Similarity=0.345  Sum_probs=27.2

Q ss_pred             eCCcEEEEECCCCchHHHHHHHHhCCCCCCceEE
Q 024529           80 DLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV  113 (266)
Q Consensus        80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i  113 (266)
                      .+|.++.+.|+.||||||+.+.|+..+.. .+.+
T Consensus         3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~-~~~~   35 (216)
T 3tmk_A            3 GRGKLILIEGLDRTGKTTQCNILYKKLQP-NCKL   35 (216)
T ss_dssp             CCCCEEEEEECSSSSHHHHHHHHHHHHCS-SEEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcc-cceE
Confidence            36899999999999999999999886654 3433

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.21  E-value=0.0035  Score=51.57  Aligned_cols=35  Identities=17%  Similarity=0.254  Sum_probs=28.0

Q ss_pred             cceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCC
Q 024529           70 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        70 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      ..++..-+.+ .|..+.|+||+|||||||...|+..
T Consensus        23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred             eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            3456655555 5788999999999999999999864

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=96.19  E-value=0.0022  Score=55.23  Aligned_cols=23  Identities=39%  Similarity=0.596  Sum_probs=21.6

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .++|+|..|+|||||++.|.|..
T Consensus        28 ~i~vvG~~~~GKSSLln~l~g~~   50 (299)
T 2aka_B           28 QIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             eEEEEeCCCCCHHHHHHHHHCCC
Confidence            69999999999999999999964

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=96.19  E-value=0.0028  Score=53.06  Aligned_cols=28  Identities=32%  Similarity=0.316  Sum_probs=24.3

Q ss_pred             eCCcEEEEECCCCchHHHHHHHHhCCCC
Q 024529           80 DLDSRIAMVGPNGIGKSTILKLIAGELQ  107 (266)
Q Consensus        80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~  107 (266)
                      .+|-+++|.|+.||||||+.+.|+..+.
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~   46 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAEYLS   46 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4688999999999999999999986543

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=96.19  E-value=0.021  Score=61.45  Aligned_cols=27  Identities=22%  Similarity=0.514  Sum_probs=24.6

Q ss_pred             EEeCCcEEEEECCCCchHHHHHHHHhC
Q 024529           78 GIDLDSRIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        78 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      -+++|+.+.|.||.|+|||||...++-
T Consensus      1423 Gi~~g~~vll~GppGtGKT~LA~ala~ 1449 (2050)
T 3cmu_A         1423 GLPMGRIVEIYGPESSGKTTLTLQVIA 1449 (2050)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            389999999999999999999988854

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=96.18  E-value=0.0024  Score=54.54  Aligned_cols=23  Identities=39%  Similarity=0.674  Sum_probs=21.0

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .++++|+.|+|||||++.|.|-.
T Consensus        41 ~I~vvG~~g~GKSSLin~l~~~~   63 (270)
T 1h65_A           41 TILVMGKGGVGKSSTVNSIIGER   63 (270)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999999854

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.17  E-value=0.0022  Score=51.24  Aligned_cols=22  Identities=27%  Similarity=0.539  Sum_probs=20.2

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|+.|+|||||++.+.+-
T Consensus        20 ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           20 KCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999864

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.16  E-value=0.0028  Score=55.79  Aligned_cols=25  Identities=32%  Similarity=0.648  Sum_probs=21.9

Q ss_pred             CcEEEEECCCCchHHHHHHHHhCCC
Q 024529           82 DSRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        82 Ge~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      +.+++|+||+|||||||...|+--+
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~   27 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRL   27 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhC
Confidence            4578999999999999999998654

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.15  E-value=0.0027  Score=56.09  Aligned_cols=24  Identities=29%  Similarity=0.555  Sum_probs=21.5

Q ss_pred             cEEEEECCCCchHHHHHHHHhCCC
Q 024529           83 SRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        83 e~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      ..++|+||+|||||||.+.|+..+
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l   29 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADAL   29 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc
Confidence            478999999999999999999754

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=96.12  E-value=0.0013  Score=53.84  Aligned_cols=23  Identities=26%  Similarity=0.618  Sum_probs=20.4

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        13 ki~vvG~~~~GKSsli~~l~~~~   35 (218)
T 4djt_A           13 KICLIGDGGVGKTTYINRVLDGR   35 (218)
T ss_dssp             EEEEECCTTSSHHHHHCBCTTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58899999999999999998643

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=96.12  E-value=0.00059  Score=57.97  Aligned_cols=32  Identities=41%  Similarity=0.703  Sum_probs=25.2

Q ss_pred             eeeceEEEeCCcEEEEECCCCchHHHHHHHHhCC
Q 024529           72 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        72 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      +.++.+..+.|  +.|.||+|+|||||++.|+..
T Consensus        36 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~   67 (268)
T 2r62_A           36 YANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGE   67 (268)
T ss_dssp             HHHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred             HHHCCCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence            34445555556  789999999999999999874

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.11  E-value=0.0036  Score=55.58  Aligned_cols=31  Identities=23%  Similarity=0.367  Sum_probs=25.6

Q ss_pred             CCcEEEEECCCCchHHHHHHHHhCCCCCCceEEE
Q 024529           81 LDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF  114 (266)
Q Consensus        81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~  114 (266)
                      ++.+++|+||.|||||||...|+.-+   .|+|.
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l---~~eiI   69 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHF---PLEVI   69 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTS---CEEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHC---CCcEE
Confidence            45689999999999999999999765   35554

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=96.08  E-value=0.0025  Score=52.36  Aligned_cols=23  Identities=22%  Similarity=0.492  Sum_probs=20.4

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      +++|+|+.|+|||||++-++.-.
T Consensus        40 ~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           40 AFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            68999999999999999988653

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.07  E-value=0.0033  Score=52.82  Aligned_cols=26  Identities=31%  Similarity=0.539  Sum_probs=22.0

Q ss_pred             CCcEEEEECCCCchHHHHHHHHhCCC
Q 024529           81 LDSRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      ...-+.|.||.|+|||||.+.++...
T Consensus        38 ~~~~vll~G~~GtGKT~la~~la~~~   63 (262)
T 2qz4_A           38 VPKGALLLGPPGCGKTLLAKAVATEA   63 (262)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHh
Confidence            34558899999999999999998743

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.05  E-value=0.002  Score=54.83  Aligned_cols=27  Identities=22%  Similarity=0.287  Sum_probs=23.6

Q ss_pred             eCCcEEEEECCCCchHHHHHHHHhCCC
Q 024529           80 DLDSRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .++-+++|.|+.||||||+.+.|+..+
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~l   48 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQLC   48 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence            467799999999999999999998765

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=96.05  E-value=0.002  Score=51.25  Aligned_cols=23  Identities=30%  Similarity=0.440  Sum_probs=20.3

Q ss_pred             cEEEEECCCCchHHHHHHHHhCC
Q 024529           83 SRIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        83 e~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      =.++|+|+.|+|||||++.+.+-
T Consensus        23 ~~i~v~G~~~~GKssli~~l~~~   45 (189)
T 2x77_A           23 IRVLMLGLDNAGKTSILYRLHLG   45 (189)
T ss_dssp             EEEEEEEETTSSHHHHHHHTCCS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            36999999999999999999653

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=96.04  E-value=0.0028  Score=51.34  Aligned_cols=22  Identities=18%  Similarity=0.525  Sum_probs=20.0

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|+.|+|||||++.+.+-
T Consensus        31 ki~vvG~~~vGKSsli~~l~~~   52 (201)
T 2hup_A           31 KLVLVGDASVGKTCVVQRFKTG   52 (201)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhhC
Confidence            5899999999999999999864

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=96.03  E-value=0.0047  Score=51.32  Aligned_cols=25  Identities=20%  Similarity=0.360  Sum_probs=22.2

Q ss_pred             EeCCcEEEEECCCCchHHHHHHHHh
Q 024529           79 IDLDSRIAMVGPNGIGKSTILKLIA  103 (266)
Q Consensus        79 i~~Ge~~~l~G~nGsGKSTLl~~l~  103 (266)
                      +++|+++.|.|+.|+|||||.--++
T Consensus        27 l~~G~l~~i~G~pG~GKT~l~l~~~   51 (251)
T 2zts_A           27 FPEGTTVLLTGGTGTGKTTFAAQFI   51 (251)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence            7899999999999999999976543

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=96.03  E-value=0.0013  Score=52.89  Aligned_cols=22  Identities=27%  Similarity=0.687  Sum_probs=4.4

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|+.|+|||||++.+.+-
T Consensus        22 ~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           22 KVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEC-----------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6899999999999999999875

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=96.00  E-value=0.0033  Score=51.70  Aligned_cols=23  Identities=30%  Similarity=0.653  Sum_probs=20.7

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        15 ki~v~G~~~vGKSsli~~l~~~~   37 (223)
T 3cpj_B           15 KIVLIGDSGVGKSNLLSRFTKNE   37 (223)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            58999999999999999998753

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=96.00  E-value=0.0033  Score=51.57  Aligned_cols=22  Identities=27%  Similarity=0.635  Sum_probs=20.1

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|+.|+|||||++.+.+-
T Consensus        29 ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           29 KLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            6899999999999999999764

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=95.99  E-value=0.003  Score=51.29  Aligned_cols=22  Identities=23%  Similarity=0.410  Sum_probs=19.7

Q ss_pred             cEEEEECCCCchHHHHHHHHhC
Q 024529           83 SRIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        83 e~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      =.++|+|+.|+|||||++.+.+
T Consensus        31 ~ki~vvG~~~~GKSsLi~~l~~   52 (204)
T 4gzl_A           31 IKCVVVGDGAVGKTCLLISYTT   52 (204)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECcCCCCHHHHHHHHHh
Confidence            3689999999999999988875

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=95.97  E-value=0.004  Score=51.29  Aligned_cols=26  Identities=31%  Similarity=0.548  Sum_probs=22.8

Q ss_pred             CcEEEEECCCCchHHHHHHHHhCCCC
Q 024529           82 DSRIAMVGPNGIGKSTILKLIAGELQ  107 (266)
Q Consensus        82 Ge~~~l~G~nGsGKSTLl~~l~Gl~~  107 (266)
                      |.+++|=|+.||||||+.+.|+-.+.
T Consensus         2 ~kFI~~EG~dGsGKsTq~~~L~~~L~   27 (205)
T 4hlc_A            2 SAFITFEGPEGSGKTTVINEVYHRLV   27 (205)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence            56899999999999999999987653

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=95.91  E-value=0.0043  Score=54.48  Aligned_cols=25  Identities=24%  Similarity=0.392  Sum_probs=21.7

Q ss_pred             CcEEEEECCCCchHHHHHHHHhCCC
Q 024529           82 DSRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        82 Ge~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      ..+++|+||+|||||||...|+...
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~~   34 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKIL   34 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhC
Confidence            3578999999999999999998654

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=95.90  E-value=0.0044  Score=51.63  Aligned_cols=26  Identities=23%  Similarity=0.290  Sum_probs=22.4

Q ss_pred             EeCCcEEEEECCCCchHHHHHHHHhC
Q 024529           79 IDLDSRIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        79 i~~Ge~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      +.+..++.|+||.||||||..+.|+-
T Consensus        26 ~~k~kiI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           26 LAKAKVIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             TTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999999974

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=95.88  E-value=0.005  Score=47.43  Aligned_cols=28  Identities=18%  Similarity=0.222  Sum_probs=23.5

Q ss_pred             eCCcEEEEECCCCchHHHHHHHHhCCCC
Q 024529           80 DLDSRIAMVGPNGIGKSTILKLIAGELQ  107 (266)
Q Consensus        80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~  107 (266)
                      ..+.-+.|.||.|+|||+|.+.|.....
T Consensus        22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~   49 (145)
T 3n70_A           22 ETDIAVWLYGAPGTGRMTGARYLHQFGR   49 (145)
T ss_dssp             TCCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence            3456689999999999999999987643

>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14

Probab=95.88  E-value=0.0089  Score=50.23  Aligned_cols=52  Identities=12%  Similarity=0.074  Sum_probs=41.6

Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecC----------HHHHHhhcCEEEEEe
Q 024529          191 KKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHD----------EHLISGSVEELWVVS  245 (266)
Q Consensus       191 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd----------~~~~~~~~d~i~~l~  245 (266)
                      .+.+++++||---..|   ..++.+.+.+.+..||+.-+|          ...+..+||.|..|+
T Consensus        89 ~~~dvViIDEaQF~~~---v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk  150 (234)
T 2orv_A           89 LGVAVIGIDEGQFFPD---IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT  150 (234)
T ss_dssp             TTCSEEEESSGGGCTT---HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred             ccCCEEEEEchhhhhh---HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence            6789999999988765   677788888878899999999          233445899998874

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=95.87  E-value=0.0049  Score=49.80  Aligned_cols=53  Identities=11%  Similarity=0.122  Sum_probs=33.8

Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHH----------HHHhhcCEEEEEe
Q 024529          191 KKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEH----------LISGSVEELWVVS  245 (266)
Q Consensus       191 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~----------~~~~~~d~i~~l~  245 (266)
                      .+++++++||--. +++...+. +..+.+.+..|+++.++.+          .+..+||.+..|+
T Consensus        75 ~~~dvviIDE~Q~-~~~~~~~~-l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~  137 (184)
T 2orw_A           75 EDTRGVFIDEVQF-FNPSLFEV-VKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK  137 (184)
T ss_dssp             TTEEEEEECCGGG-SCTTHHHH-HHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred             CCCCEEEEECccc-CCHHHHHH-HHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence            3678999999754 65553333 3434444677888777544          1234699988775

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=95.86  E-value=0.0037  Score=50.76  Aligned_cols=22  Identities=23%  Similarity=0.445  Sum_probs=19.9

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|+.|+|||||++.+.+-
T Consensus        11 ki~i~G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A           11 KCVTVGDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999854

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=95.76  E-value=0.005  Score=49.66  Aligned_cols=41  Identities=24%  Similarity=0.331  Sum_probs=28.8

Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CEEEEEecCHH
Q 024529          191 KKPHIILLDEPSNHLDLDAVEALIQGLVLFQ--GGILMVSHDEH  232 (266)
Q Consensus       191 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~tiiivtHd~~  232 (266)
                      .++.++++||. ..++......+...+....  ..+|++|....
T Consensus       101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~  143 (226)
T 2chg_A          101 APFKIIFLDEA-DALTADAQAALRRTMEMYSKSCRFILSCNYVS  143 (226)
T ss_dssp             CSCEEEEEETG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred             cCceEEEEeCh-hhcCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence            36889999995 5577777777877776643  34677776553

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=95.71  E-value=0.0059  Score=50.35  Aligned_cols=22  Identities=41%  Similarity=0.626  Sum_probs=19.6

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      ++.|+||.||||+|..+.|+--
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~   23 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKE   23 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999999854

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=95.63  E-value=0.0067  Score=52.94  Aligned_cols=25  Identities=28%  Similarity=0.562  Sum_probs=21.5

Q ss_pred             CcEEEEECCCCchHHHHHHHHhCCC
Q 024529           82 DSRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        82 Ge~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      +-.++|+|+.|+|||||++.+.+-.
T Consensus         3 ~~KI~lvG~~~vGKSSLi~~l~~~~   27 (307)
T 3r7w_A            3 GSKLLLMGRSGSGKSSMRSIIFSNY   27 (307)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHSCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCC
Confidence            3468999999999999999987763

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=95.62  E-value=0.0027  Score=58.41  Aligned_cols=26  Identities=35%  Similarity=0.428  Sum_probs=23.4

Q ss_pred             cEEEEECCCCchHHHHHHHHhCCCCC
Q 024529           83 SRIAMVGPNGIGKSTILKLIAGELQP  108 (266)
Q Consensus        83 e~~~l~G~nGsGKSTLl~~l~Gl~~p  108 (266)
                      .+++|+|++|+||||+...|++.+..
T Consensus       100 ~vI~ivG~~GvGKTTla~~La~~l~~  125 (432)
T 2v3c_C          100 NVILLVGIQGSGKTTTAAKLARYIQK  125 (432)
T ss_dssp             CCEEEECCSSSSTTHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            58999999999999999999987653

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=95.62  E-value=0.0099  Score=47.81  Aligned_cols=34  Identities=18%  Similarity=0.173  Sum_probs=26.0

Q ss_pred             cceeeceEEEeCCcEEEEECCCCchHHHHHHHHhC
Q 024529           70 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        70 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      ..++..-+.+ .|.-+.|.|++|+|||||...+..
T Consensus         5 ~~lHas~v~v-~G~gvli~G~SGaGKStlal~L~~   38 (181)
T 3tqf_A            5 QTWHANFLVI-DKMGVLITGEANIGKSELSLALID   38 (181)
T ss_dssp             EEEESEEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred             EEEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence            3445544554 578899999999999999887754

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=95.60  E-value=0.0067  Score=52.34  Aligned_cols=26  Identities=31%  Similarity=0.468  Sum_probs=22.0

Q ss_pred             CCcEEEEECCCCchHHHHHHHHhCCC
Q 024529           81 LDSRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      ++..+.|.||.|+|||||.+.++..+
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~~l   91 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAGLL   91 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHH
Confidence            34568999999999999999887654

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=95.57  E-value=0.0079  Score=51.98  Aligned_cols=27  Identities=26%  Similarity=0.404  Sum_probs=22.9

Q ss_pred             cEEEEECCCCchHHHHHHHHhCCCCCC
Q 024529           83 SRIAMVGPNGIGKSTILKLIAGELQPS  109 (266)
Q Consensus        83 e~~~l~G~nGsGKSTLl~~l~Gl~~p~  109 (266)
                      -.++|+|.+|+|||||++.|.|.....
T Consensus       121 ~~v~~vG~~nvGKSsliN~l~~~~~~~  147 (282)
T 1puj_A          121 IRALIIGIPNVGKSTLINRLAKKNIAK  147 (282)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCC-
T ss_pred             ceEEEEecCCCchHHHHHHHhcCceee
Confidence            369999999999999999999975433

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=95.54  E-value=0.0065  Score=55.23  Aligned_cols=23  Identities=30%  Similarity=0.524  Sum_probs=20.4

Q ss_pred             cEEEEECCCCchHHHHHHHHhCC
Q 024529           83 SRIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        83 e~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .+++|.||+|||||||...|+-.
T Consensus         3 ~~i~i~GptgsGKttla~~La~~   25 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQK   25 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHH
T ss_pred             cEEEEECcchhhHHHHHHHHHHH
Confidence            47899999999999999999754

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=95.53  E-value=0.0064  Score=55.21  Aligned_cols=67  Identities=12%  Similarity=0.045  Sum_probs=39.0

Q ss_pred             HHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEE---eCCCCCCCHHHHHHHHHHHhhcCCEEEEEe
Q 024529          153 KLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILL---DEPSNHLDLDAVEALIQGLVLFQGGILMVS  228 (266)
Q Consensus       153 ~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllL---DEPt~~LD~~~~~~l~~~l~~~~~tiiivt  228 (266)
                      .+.++++.++...     +...+|..+...+.-...+...|-++++   |.+    +......+.+.+...+..+|.+|
T Consensus       181 ~~~~~l~~l~~~~-----~~~~~~~~e~~~l~~~~~~~~kP~i~v~NK~D~~----~~~~l~~l~~~~~~~~~~vv~iS  250 (397)
T 1wxq_A          181 DVWEAMHKLNLPE-----DPTKWSQDDLLAFASEIRRVNKPMVIAANKADAA----SDEQIKRLVREEEKRGYIVIPTS  250 (397)
T ss_dssp             HHHHHHHHTTCCS-----CGGGCCHHHHHHHHHHHHHHHSCEEEEEECGGGS----CHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             HHHHHHHHhccCC-----ccccCCHHHHHHHHHhhhccCCCEEEEEeCcccc----chHHHHHHHHHHhhcCCcEEEEe
Confidence            3445555555432     2347888988887766666678988887   544    12333444444433344566555

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=95.50  E-value=0.0042  Score=50.89  Aligned_cols=39  Identities=13%  Similarity=0.170  Sum_probs=26.9

Q ss_pred             HHHHHHHHHccCCCEEEEeCCCC-----CCCHHHHHHHHHHHhh
Q 024529          181 SRVAFAKITFKKPHIILLDEPSN-----HLDLDAVEALIQGLVL  219 (266)
Q Consensus       181 qRv~lAral~~~p~lllLDEPt~-----~LD~~~~~~l~~~l~~  219 (266)
                      -.-.|++.+..+|.+.+.++|+.     .+|+.....+...+..
T Consensus       165 l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (221)
T 3gj0_A          165 PFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEV  208 (221)
T ss_dssp             HHHHHHHHHHTCTTCCEEECCCBCCCSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcccccccCCCCCCCCCCcchhhhhhhHHHHhh
Confidence            34467788888888888877766     5677666666655543

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=95.49  E-value=0.0059  Score=55.97  Aligned_cols=22  Identities=55%  Similarity=0.809  Sum_probs=20.7

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|+.|+|||||++.|+|-
T Consensus         5 ~V~ivG~~nvGKStL~n~l~~~   26 (436)
T 2hjg_A            5 VVAIVGRPNVGKSTIFNRIAGE   26 (436)
T ss_dssp             EEEEECSTTSSHHHHHHHHEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999985

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=94.47  E-value=0.0024  Score=51.64  Aligned_cols=23  Identities=22%  Similarity=0.406  Sum_probs=20.0

Q ss_pred             cEEEEECCCCchHHHHHHHHhCC
Q 024529           83 SRIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        83 e~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      =.++|+|+.|+|||||++.+.+-
T Consensus        31 ~ki~v~G~~~~GKSsli~~l~~~   53 (204)
T 3th5_A           31 IKCVVVGDGAVGKTCLLISYTTN   53 (204)
Confidence            36899999999999999888753

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=95.48  E-value=0.0037  Score=57.66  Aligned_cols=36  Identities=31%  Similarity=0.445  Sum_probs=27.4

Q ss_pred             eeceEEEeCCcE--EEEECCCCchHHHHHHHHhCCCCC
Q 024529           73 KNLNFGIDLDSR--IAMVGPNGIGKSTILKLIAGELQP  108 (266)
Q Consensus        73 ~~vsl~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~p  108 (266)
                      +.+.-.+..|..  +.|.||.|+|||||.++|+.....
T Consensus        39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~   76 (447)
T 3pvs_A           39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANA   76 (447)
T ss_dssp             SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCC
Confidence            334444455554  899999999999999999987644

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=95.45  E-value=0.0073  Score=51.35  Aligned_cols=25  Identities=28%  Similarity=0.343  Sum_probs=21.7

Q ss_pred             CCcEEEEECCCCchHHHHHHHHhCC
Q 024529           81 LDSRIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      +..-+.|.||.|+|||||.+.++..
T Consensus        63 ~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           63 PLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            3456889999999999999999874

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.44  E-value=0.009  Score=52.25  Aligned_cols=25  Identities=40%  Similarity=0.574  Sum_probs=22.4

Q ss_pred             CcEEEEECCCCchHHHHHHHHhCCC
Q 024529           82 DSRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        82 Ge~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      +.-+.|.||.|+|||+|+++|+...
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~  176 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHEL  176 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHH
Confidence            6789999999999999999998654

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=95.44  E-value=0.0069  Score=53.98  Aligned_cols=25  Identities=32%  Similarity=0.595  Sum_probs=21.9

Q ss_pred             CcEEEEECCCCchHHHHHHHHhCCC
Q 024529           82 DSRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        82 Ge~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .-+++|+|+.|+|||||++.|++.+
T Consensus        79 ~~~I~i~G~~G~GKSTl~~~L~~~l  103 (355)
T 3p32_A           79 AHRVGITGVPGVGKSTAIEALGMHL  103 (355)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHH
Confidence            3579999999999999999998654

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=95.41  E-value=0.0091  Score=52.75  Aligned_cols=28  Identities=11%  Similarity=0.157  Sum_probs=24.9

Q ss_pred             EEEeCCcEEEEECCCCchHHHHHHHHhC
Q 024529           77 FGIDLDSRIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        77 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      --+.+|..+.|.||.|+|||||...++.
T Consensus       118 GGi~~gsviLI~GpPGsGKTtLAlqlA~  145 (331)
T 2vhj_A          118 GHRYASGMVIVTGKGNSGKTPLVHALGE  145 (331)
T ss_dssp             TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred             CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            3578889999999999999999999875

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=95.38  E-value=0.0095  Score=52.33  Aligned_cols=27  Identities=37%  Similarity=0.455  Sum_probs=23.2

Q ss_pred             eCCcEEEEECCCCchHHHHHHHHhCCC
Q 024529           80 DLDSRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .+..-+.|.||.|+|||||.+.++...
T Consensus        43 ~~~~~iLL~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           43 TPWRGILLFGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCccHHHHHHHHHHHc
Confidence            345678999999999999999999754

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=95.37  E-value=0.0015  Score=52.78  Aligned_cols=23  Identities=30%  Similarity=0.661  Sum_probs=20.7

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        35 ki~vvG~~~~GKSsli~~l~~~~   57 (199)
T 3l0i_B           35 KLLLIGDSGVGKSCLLLRFADDT   57 (199)
T ss_dssp             EEEEECCTTSCCTTTTTSSBCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998754

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.32  E-value=0.009  Score=51.27  Aligned_cols=25  Identities=36%  Similarity=0.652  Sum_probs=21.7

Q ss_pred             CcEEEEECCCCchHHHHHHHHhCCC
Q 024529           82 DSRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        82 Ge~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      +.-+.|.||.|+|||||.+.++...
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~l   74 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKLA   74 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHh
Confidence            3458899999999999999998765

>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}

Probab=95.31  E-value=0.0048  Score=55.88  Aligned_cols=32  Identities=41%  Similarity=0.422  Sum_probs=28.1

Q ss_pred             eceEEEeCCcEEEEECCCCchHHHHHHHHhCC
Q 024529           74 NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        74 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      |.=+.+.+|+..+|+|+.|+|||||+..|+..
T Consensus       167 D~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~  198 (427)
T 3l0o_A          167 DLFAPIGKGQRGMIVAPPKAGKTTILKEIANG  198 (427)
T ss_dssp             HHHSCCBTTCEEEEEECTTCCHHHHHHHHHHH
T ss_pred             hhcccccCCceEEEecCCCCChhHHHHHHHHH
Confidence            45567899999999999999999999988764

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=95.30  E-value=0.0059  Score=54.34  Aligned_cols=23  Identities=39%  Similarity=0.596  Sum_probs=21.5

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .++|+|..|+|||||++.|.|..
T Consensus        33 ~I~vvG~~~~GKSSLln~L~g~~   55 (353)
T 2x2e_A           33 QIAVVGGQSAGKSSVLENFVGRD   55 (353)
T ss_dssp             EEEEECBTTSSHHHHHHTTTTSC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCC
Confidence            69999999999999999999964

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=95.27  E-value=0.0089  Score=51.76  Aligned_cols=24  Identities=25%  Similarity=0.343  Sum_probs=20.9

Q ss_pred             cEEEEECCCCchHHHHHHHHhCCC
Q 024529           83 SRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        83 e~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      ..+.|.||.|+|||+|.+.|+...
T Consensus        37 ~~lLl~GppGtGKT~la~aiA~~l   60 (293)
T 3t15_A           37 LILGIWGGKGQGKSFQCELVFRKM   60 (293)
T ss_dssp             SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            457888999999999999998754

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=95.26  E-value=0.0094  Score=53.01  Aligned_cols=25  Identities=36%  Similarity=0.642  Sum_probs=21.7

Q ss_pred             CcEEEEECCCCchHHHHHHHHhCCC
Q 024529           82 DSRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        82 Ge~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      +.-+.|.||+|+||||+.++|+...
T Consensus        51 ~~~vll~GppGtGKT~la~~ia~~~   75 (363)
T 3hws_A           51 KSNILLIGPTGSGKTLLAETLARLL   75 (363)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHc
Confidence            3457899999999999999999765

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=95.25  E-value=0.0098  Score=52.61  Aligned_cols=28  Identities=25%  Similarity=0.312  Sum_probs=24.3

Q ss_pred             eCCcEEEEECCCCchHHHHHHHHhCCCC
Q 024529           80 DLDSRIAMVGPNGIGKSTILKLIAGELQ  107 (266)
Q Consensus        80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~  107 (266)
                      .+|..+.|.||.|+|||||.+.++....
T Consensus        68 ~~~~~vLl~GppGtGKT~la~~la~~l~   95 (368)
T 3uk6_A           68 IAGRAVLIAGQPGTGKTAIAMGMAQALG   95 (368)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3467899999999999999999997654

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.22  E-value=0.01  Score=52.59  Aligned_cols=25  Identities=28%  Similarity=0.394  Sum_probs=22.1

Q ss_pred             CcEEEEECCCCchHHHHHHHHhCCC
Q 024529           82 DSRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        82 Ge~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      +..+.|.||.|+|||||++.++...
T Consensus        45 ~~~vll~G~~G~GKT~la~~l~~~~   69 (384)
T 2qby_B           45 KFSNLFLGLTGTGKTFVSKYIFNEI   69 (384)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHH
Confidence            5589999999999999999998654

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=95.22  E-value=0.011  Score=49.65  Aligned_cols=22  Identities=32%  Similarity=0.560  Sum_probs=19.7

Q ss_pred             cEEEEECCCCchHHHHHHHHhC
Q 024529           83 SRIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        83 e~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      -..||+|+.||||||+.+.|+-
T Consensus         9 ~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            9 MRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cceeeECCCCCCHHHHHHHHHH
Confidence            4689999999999999999964

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=95.20  E-value=0.012  Score=51.58  Aligned_cols=25  Identities=44%  Similarity=0.593  Sum_probs=21.9

Q ss_pred             CCcEEEEECCCCchHHHHHHHHhCC
Q 024529           81 LDSRIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      +..-+.|.||.|+|||||.+.++..
T Consensus        50 ~~~~vLl~GppGtGKT~la~aia~~   74 (322)
T 3eie_A           50 PTSGILLYGPPGTGKSYLAKAVATE   74 (322)
T ss_dssp             CCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHH
Confidence            4456899999999999999999875

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=95.20  E-value=0.011  Score=52.65  Aligned_cols=33  Identities=21%  Similarity=0.486  Sum_probs=26.6

Q ss_pred             eeceEEEeCCcEEEEECCCCchHHHHHHHHhCC
Q 024529           73 KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        73 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      ..+.++++---.++|+|..++|||||++.|++-
T Consensus       149 ~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~  181 (342)
T 1lnz_A          149 RYIVLELKVLADVGLVGFPSVGKSTLLSVVSSA  181 (342)
T ss_dssp             EEEEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred             hhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence            345566665556999999999999999999874

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=95.19  E-value=0.011  Score=52.53  Aligned_cols=27  Identities=37%  Similarity=0.481  Sum_probs=23.2

Q ss_pred             eCCcEEEEECCCCchHHHHHHHHhCCC
Q 024529           80 DLDSRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .+..-+.|.||.|+|||||++.|+...
T Consensus       115 ~~~~~vLl~GppGtGKT~la~aia~~~  141 (357)
T 3d8b_A          115 GPPKGILLFGPPGTGKTLIGKCIASQS  141 (357)
T ss_dssp             SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence            345679999999999999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	266
d1r0wa_	281	c.37.1.12 (A:) Cystic fibrosis transmembrane condu	4e-30
d1mv5a_	242	c.37.1.12 (A:) Multidrug resistance ABC transporte	7e-29
d2hyda1	255	c.37.1.12 (A:324-578) Putative multidrug export AT	9e-27
d3b60a1	253	c.37.1.12 (A:329-581) Multidrug resistance ABC tra	4e-26
d2pmka1	241	c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro	3e-25
d1sgwa_	200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	3e-25
d1jj7a_	251	c.37.1.12 (A:) Peptide transporter Tap1, C-termina	6e-23
d1l2ta_	230	c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann	2e-22
d1vpla_	238	c.37.1.12 (A:) Putative ABC transporter TM0544 {Th	8e-22
d1v43a3	239	c.37.1.12 (A:7-245) Hypothetical protein PH0022, N	9e-22
d1l7vc_	231	c.37.1.12 (C:) ABC transporter involved in vitamin	2e-20
d1g6ha_	254	c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann	5e-20
d1g2912	240	c.37.1.12 (1:1-240) Maltose transport protein MalK	2e-19
d1ji0a_	240	c.37.1.12 (A:) Branched chain aminoacid ABC transp	2e-19
d2awna2	232	c.37.1.12 (A:4-235) Maltose transport protein MalK	4e-19
d3dhwc1	240	c.37.1.12 (C:1-240) Methionine import ATP-binding	3e-18
d1b0ua_	258	c.37.1.12 (A:) ATP-binding subunit of the histidin	4e-18
d2onka1	240	c.37.1.12 (A:1-240) Molybdate/tungstate import ATP	6e-17
d1oxxk2	242	c.37.1.12 (K:1-242) Glucose transport protein GlcV	2e-16
d1ye8a1	178	c.37.1.11 (A:1-178) Hypothetical kinase-like prote	2e-16
d3d31a2	229	c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor	3e-15
g1f2t.1	292	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	7e-09
g1f2t.1	292	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	8e-05
g1ii8.1	369	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	8e-09
g1ii8.1	369	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	0.002

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  111 bits (280), Expect = 4e-30
 Identities = 55/246 (22%), Positives = 110/246 (44%), Gaps = 29/246 (11%)

Query: 26  ERMGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRI 85
           E  G + E V   +   +  + ++      +SFS       G P+L KN+N  I+    +
Sbjct: 14  EGFGELLEKVQQSNGDRKHSSDENN-----VSFSHLCLV--GNPVL-KNINLNIEKGEML 65

Query: 86  AMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRC 145
           A+ G  G GK+++L LI GEL+ S G +  S   R++  SQ       +    +   +  
Sbjct: 66  AITGSTGSGKTSLLMLILGELEASEGIIKHSG--RVSFCSQFSW----IMPGTIKENIIF 119

Query: 146 FPGVPEQKLRAHLGSFGVTGNLALQP----------MYTLSGGQKSRVAFAKITFKKPHI 195
                E + ++ + +  +  ++                TLSGGQ++R++ A+  +K   +
Sbjct: 120 GVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADL 179

Query: 196 ILLDEPSNHLDLDAVEALIQGLVLFQGG---ILMVSHDEHLISGSVEELWVVSEGKATPF 252
            LLD P  +LD+   E + +  V         ++V+     +  + +++ ++ +G +  F
Sbjct: 180 YLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKA-DKILILHQGSSY-F 237

Query: 253 HGTFHD 258
           +GTF +
Sbjct: 238 YGTFSE 243

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

 Score =  107 bits (269), Expect = 7e-29
 Identities = 47/239 (19%), Positives = 98/239 (41%), Gaps = 30/239 (12%)

Query: 55  IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
           ++S     F Y     + ++++F    +S IA  GP+G GKSTI  L+    QP++G + 
Sbjct: 1   MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60

Query: 115 -----------RSAKVRIAV-------FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRA 156
                       + + +I          +    + L             +  +     R+
Sbjct: 61  IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARS 120

Query: 157 HLGSFGVTGNLAL-QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ 215
            + +     N  + +    +SGGQ+ R+A A+   + P I++LDE +  LD ++   + +
Sbjct: 121 FVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQK 180

Query: 216 GLVLFQGG--ILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHD-------YKKMLQS 265
            L     G   L+++H    I  + ++++ + +G+ T   G  ++       Y K +  
Sbjct: 181 ALDSLMKGRTTLVIAHRLSTIVDA-DKIYFIEKGQIT-GSGKHNELVATHPLYAKYVSE 237

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score =  102 bits (256), Expect = 9e-27
 Identities = 53/243 (21%), Positives = 92/243 (37%), Gaps = 59/243 (24%)

Query: 49  DRPG-PPI------ISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTIL 99
           +  G  PI      I     SF Y     PIL K++N  I+    +A VG +G GKST++
Sbjct: 3   NGVGAQPIEIKQGRIDIDHVSFQYNDNEAPIL-KDINLSIEKGETVAFVGMSGGGKSTLI 61

Query: 100 KLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCF------------- 146
            LI      +SG +               +DG ++       +                 
Sbjct: 62  NLIPRFYDVTSGQIL--------------IDGHNIKDFLTGSLRNQIGLVQQDNILFSDT 107

Query: 147 ---------PGVPEQKLRAHLGSFGVTGNLALQPM----------YTLSGGQKSRVAFAK 187
                    P   ++++            +   P             LSGGQK R++ A+
Sbjct: 108 VKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIAR 167

Query: 188 ITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGG--ILMVSHDEHLISGSVEELWVVS 245
           I    P I++LDE ++ LDL++   + + L +       L+V+H    I+ + +++ V+ 
Sbjct: 168 IFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHA-DKIVVIE 226

Query: 246 EGK 248
            G 
Sbjct: 227 NGH 229

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score =  100 bits (251), Expect = 4e-26
 Identities = 51/239 (21%), Positives = 88/239 (36%), Gaps = 31/239 (12%)

Query: 56  ISFSDASFGYPGGPI-LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
           + F + +F YPG  +   +N+N  I     +A+VG +G GKSTI  LI        G + 
Sbjct: 14  LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL 73

Query: 115 ---------RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTG 165
                      A +R  V        L   +               +++           
Sbjct: 74  MDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMD 133

Query: 166 NLALQPM----------YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ 215
            +                 LSGGQ+ R+A A+   +   I++LDE ++ LD ++  A+  
Sbjct: 134 FINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQA 193

Query: 216 GLVLFQGG--ILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHD-------YKKMLQS 265
            L   Q     L+++H    I    +E+ VV +G      GT  +       Y ++ + 
Sbjct: 194 ALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGIIV-ERGTHSELLAQHGVYAQLHKM 250

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

 Score = 98.1 bits (244), Expect = 3e-25
 Identities = 52/252 (20%), Positives = 95/252 (37%), Gaps = 57/252 (22%)

Query: 56  ISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
           I+F +  F Y    P++  N+N  I     I +VG +G GKST+ KLI     P +G V 
Sbjct: 2   ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61

Query: 115 RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCF----------------------PGVPEQ 152
                         +DG DL+     ++ R                        PG+  +
Sbjct: 62  --------------IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVE 107

Query: 153 KLRAHLGSFGVTGNLALQPM----------YTLSGGQKSRVAFAKITFKKPHIILLDEPS 202
           K+       G    ++                LSGGQ+ R+A A+     P I++ DE +
Sbjct: 108 KVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEAT 167

Query: 203 NHLDLDAVEALIQGLVLFQGG--ILMVSHDEHLISGSVEELWVVSEGK----ATP---FH 253
           + LD ++   +++ +     G  +++++H    +  + + + V+ +GK            
Sbjct: 168 SALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNA-DRIIVMEKGKIVEQGKHKELLS 226

Query: 254 GTFHDYKKMLQS 265
                Y  + Q 
Sbjct: 227 EPESLYSYLYQL 238

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 96.9 bits (241), Expect = 3e-25
 Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 14/189 (7%)

Query: 55  IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
            +   D S GY   P+L + +   I+  + +   GPNGIGK+T+LK I+  L+P  G + 
Sbjct: 2   KLEIRDLSVGY-DKPVL-ERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 59

Query: 115 ------RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAH--LGSFGVTGN 166
                    K +I    +  +    +S    L  +    GV   K      L S  V   
Sbjct: 60  YNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL 119

Query: 167 LALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV--LFQGGI 224
              + +  LS G   RV  A        I +LD+P   +D D+   +++ ++  L + GI
Sbjct: 120 --KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGI 177

Query: 225 LMVSHDEHL 233
           +++S  E L
Sbjct: 178 VIISSREEL 186

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.3 bits (229), Expect = 6e-23
 Identities = 55/242 (22%), Positives = 97/242 (40%), Gaps = 34/242 (14%)

Query: 56  ISFSDASFGYPGGP--ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
           + F D SF YP  P  ++ + L F +      A+VGPNG GKST+  L+    QP+ G +
Sbjct: 12  VQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQL 71

Query: 114 F-----------RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP---GVPEQKLRAHLG 159
                       R    ++A   Q            + Y +   P    +    +++   
Sbjct: 72  LLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAH 131

Query: 160 SF-----GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA---VE 211
           SF             +    LSGGQ+  VA A+   +KP +++LD+ ++ LD ++   VE
Sbjct: 132 SFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVE 191

Query: 212 ALIQGLVLFQG-GILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHD-------YKKML 263
            L+          +L+++    L+  + + +  +  G      GT          Y  M+
Sbjct: 192 QLLYESPERYSRSVLLITQHLSLVEQA-DHILFLEGGAIR-EGGTHQQLMEKKGCYWAMV 249

Query: 264 QS 265
           Q+
Sbjct: 250 QA 251

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 90.3 bits (224), Expect = 2e-22
 Identities = 53/210 (25%), Positives = 91/210 (43%), Gaps = 29/210 (13%)

Query: 55  IISFSDASFGYPGGPILF---KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 111
           +I   + +  Y  G  +    KN+N  I     ++++GP+G GKST+L +I    +P+ G
Sbjct: 1   MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG 60

Query: 112 TVF---------------RSAKVRIAVFSQH-----HVDGLDLSSNPLLYMMRCFPGVPE 151
            V+               +  + +I    Q       +  L+    PL++  R      E
Sbjct: 61  EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEE 120

Query: 152 QKLRA--HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA 209
           ++ RA   L    +    A      LSGGQ+ RVA A+     P IIL D+P+  LD   
Sbjct: 121 RRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKT 180

Query: 210 ---VEALIQGLVLFQG-GILMVSHDEHLIS 235
              +  L++ L    G  +++V+HD ++  
Sbjct: 181 GEKIMQLLKKLNEEDGKTVVVVTHDINVAR 210

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

 Score = 88.9 bits (220), Expect = 8e-22
 Identities = 43/210 (20%), Positives = 82/210 (39%), Gaps = 19/210 (9%)

Query: 56  ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF- 114
           +   D         IL K ++F I+      ++GPNG GK+T L++I+  ++PSSG V  
Sbjct: 3   VVVKDLRKRIGKKEIL-KGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTV 61

Query: 115 ---------RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVP----EQKLRAHLGSF 161
                       +  I+   +      ++     L  +  F        E+ +       
Sbjct: 62  FGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIA 121

Query: 162 GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQ 221
           G+ G      + T S G   ++  A+     P + +LDEP++ LD+     + + L    
Sbjct: 122 GL-GEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQAS 180

Query: 222 ---GGILMVSHDEHLISGSVEELWVVSEGK 248
                IL+ SH+   +    + + ++  G 
Sbjct: 181 QEGLTILVSSHNMLEVEFLCDRIALIHNGT 210

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 88.7 bits (220), Expect = 9e-22
 Identities = 45/210 (21%), Positives = 91/210 (43%), Gaps = 19/210 (9%)

Query: 56  ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF- 114
           +   + +  +     +   LN  I     + ++GP+G GK+T L++IAG  +P+ G ++ 
Sbjct: 7   VKLENLTKRFGNFTAV-NKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYF 65

Query: 115 --------RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVP----EQKLRAHLGSFG 162
                         I++  Q +     ++    +         P    ++++R       
Sbjct: 66  GDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQ 125

Query: 163 VTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL---DAVEALIQGLVL 219
           +   L  +    LSGGQ+ RVA A+    +P ++L+DEP ++LD     A+ A I+ L  
Sbjct: 126 IEE-LLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ 184

Query: 220 FQGG-ILMVSHDEHLISGSVEELWVVSEGK 248
                 + V+HD+       + + V++ G+
Sbjct: 185 KLKVTTIYVTHDQVEAMTMGDRIAVMNRGQ 214

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

 Score = 85.0 bits (210), Expect = 2e-20
 Identities = 46/215 (21%), Positives = 79/215 (36%), Gaps = 29/215 (13%)

Query: 55  IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
           ++   D +            L+  +     + +VGPNG GKST+L  +AG +    G++ 
Sbjct: 3   VMQLQDVAEST-----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQ 56

Query: 115 -----------RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGV 163
                          +  A  SQ             L + +       + L    G+  +
Sbjct: 57  FAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQ-HDKTRTELLNDVAGALAL 115

Query: 164 TGNLALQPMYTLSGGQKSRVAFAKI-------TFKKPHIILLDEPSNHLDL---DAVEAL 213
             +   +    LSGG+  RV  A +             ++LLDEP N LD+    A++ +
Sbjct: 116 D-DKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKI 174

Query: 214 IQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGK 248
           +  L      I+M SHD +         W++  GK
Sbjct: 175 LSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGK 209

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 84.3 bits (208), Expect = 5e-20
 Identities = 37/225 (16%), Positives = 78/225 (34%), Gaps = 32/225 (14%)

Query: 55  IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
           I+   +    +     L   ++  ++      ++GPNG GKST++ +I G L+   G V+
Sbjct: 4   ILRTENIVKYFGEFKAL-DGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY 62

Query: 115 -------------RSAKVRIAVFSQHHVD-----------GLDLSSNPLLYMMRCFPGVP 150
                              +  F                 G        L  +     +P
Sbjct: 63  FENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIP 122

Query: 151 EQKLRA----HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 206
           +++        +  F    +L  +    LSGGQ   V   +     P +I++DEP   + 
Sbjct: 123 KEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVA 182

Query: 207 LDAVEALIQGLVLFQG---GILMVSHDEHLISGSVEELWVVSEGK 248
                 +   ++  +      L++ H   ++   ++ L+V+  G+
Sbjct: 183 PGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQ 227

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score = 82.7 bits (204), Expect = 2e-19
 Identities = 49/217 (22%), Positives = 93/217 (42%), Gaps = 25/217 (11%)

Query: 55  IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
            +   D    +     + + ++  +     + ++GP+G GK+T L++IAG  +PS G ++
Sbjct: 3   GVRLVDVWKVFGEVTAV-REMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIY 61

Query: 115 ---------------RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVP----EQKLR 155
                                IA+  Q +     ++    +        VP    +Q++R
Sbjct: 62  IGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVR 121

Query: 156 AHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD---LDAVEA 212
                 G+T  L  +P   LSGGQ+ RVA  +   +KP + L+DEP ++LD      + A
Sbjct: 122 EVAELLGLTELLNRKP-RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRA 180

Query: 213 LIQGLVLFQG-GILMVSHDEHLISGSVEELWVVSEGK 248
            ++ L    G   + V+HD+       + + V++ G 
Sbjct: 181 ELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGV 217

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

 Score = 82.3 bits (203), Expect = 2e-19
 Identities = 40/213 (18%), Positives = 77/213 (36%), Gaps = 19/213 (8%)

Query: 54  PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 113
            ++        Y     + K ++  +     + ++G NG GK+T L  IAG ++   G +
Sbjct: 5   IVLEVQSLHVYYGAIHAI-KGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63

Query: 114 F------------RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPE---QKLRAHL 158
                           ++ IA+  +      +L+    L M        E   + L    
Sbjct: 64  IFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIF 123

Query: 159 GSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV 218
             F        Q   TLSGG++  +A  +    +P ++++DEPS  L    V  + + + 
Sbjct: 124 SLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQ 183

Query: 219 LFQG---GILMVSHDEHLISGSVEELWVVSEGK 248
                   IL+V  +           +V+  G+
Sbjct: 184 KINQEGTTILLVEQNALGALKVAHYGYVLETGQ 216

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 81.5 bits (201), Expect = 4e-19
 Identities = 48/209 (22%), Positives = 89/209 (42%), Gaps = 17/209 (8%)

Query: 56  ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF- 114
           +   + +  +    +  K++N  I     +  VGP+G GKST+L++IAG    +SG +F 
Sbjct: 1   VQLQNVTKAWGEVVVS-KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI 59

Query: 115 --------RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRA---HLGSFGV 163
                     A+  + +  Q +     LS    +       G  ++ +      +     
Sbjct: 60  GEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQ 119

Query: 164 TGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD---LDAVEALIQGLVLF 220
             +L  +    LSGGQ+ RVA  +    +P + LLDEP ++LD      +   I  L   
Sbjct: 120 LAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR 179

Query: 221 QGG-ILMVSHDEHLISGSVEELWVVSEGK 248
            G  ++ V+HD+       +++ V+  G+
Sbjct: 180 LGRTMIYVTHDQVEAMTLADKIVVLDAGR 208

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

 Score = 79.2 bits (195), Expect = 3e-18
 Identities = 47/220 (21%), Positives = 95/220 (43%), Gaps = 28/220 (12%)

Query: 55  IISFSDASFGYPGGPILFKNLNFGIDLD----SRIAMVGPNGIGKSTILKLIAGELQPSS 110
           +I  S+ +  +  G    + LN  + L         ++G +G GKST+++ +    +P+ 
Sbjct: 1   MIKLSNITKVFHQGTRTIQALN-NVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTE 59

Query: 111 GTVF--------------RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRA 156
           G+V                 A+ +I +  QH       +    + +       P+ +++ 
Sbjct: 60  GSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKR 119

Query: 157 H----LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD---LDA 209
                L   G+ G+        LSGGQK RVA A+     P ++L DE ++ LD     +
Sbjct: 120 RVTELLSLVGL-GDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRS 178

Query: 210 VEALIQGLVLFQG-GILMVSHDEHLISGSVEELWVVSEGK 248
           +  L++ +    G  IL+++H+  ++    + + V+S G+
Sbjct: 179 ILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGE 218

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

 Score = 79.1 bits (195), Expect = 4e-18
 Identities = 45/226 (19%), Positives = 88/226 (38%), Gaps = 33/226 (14%)

Query: 55  IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
            +   D    Y G  +L K ++        I+++G +G GKST L+ I    +PS G + 
Sbjct: 2   KLHVIDLHKRYGGHEVL-KGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII 60

Query: 115 ------------------------RSAKVRIAVFSQHHVDGLDLS-SNPLLYMMRCFPGV 149
                                   R  + R+ +  QH      ++    ++       G+
Sbjct: 61  VNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGL 120

Query: 150 PEQKLRAH----LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHL 205
            +   R      L   G+      +    LSGGQ+ RV+ A+    +P ++L DEP++ L
Sbjct: 121 SKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSAL 180

Query: 206 DLDAVEALIQGLVLFQG---GILMVSHDEHLISGSVEELWVVSEGK 248
           D + V  +++ +         +++V+H+          +  + +GK
Sbjct: 181 DPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGK 226

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 75.8 bits (186), Expect = 6e-17
 Identities = 46/195 (23%), Positives = 81/195 (41%), Gaps = 19/195 (9%)

Query: 72  FKNLNFGIDLDSR---IAMVGPNGIGKSTILKLIAGELQPSSGTVF---------RSAKV 119
             N    +D +       ++GP G GKS  L+LIAG ++P  G V             + 
Sbjct: 11  LGNFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERR 70

Query: 120 RIAVFSQHH--VDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSG 177
            I    Q +     L +  N    +        ++++R      G+   L  +    LSG
Sbjct: 71  GIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAH-LLDRKPARLSG 129

Query: 178 GQKSRVAFAKITFKKPHIILLDEPSNHLD---LDAVEALIQGLVLFQGG-ILMVSHDEHL 233
           G++ RVA A+    +P ++LLDEP + +D      +   ++ +       IL V+HD   
Sbjct: 130 GERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIE 189

Query: 234 ISGSVEELWVVSEGK 248
            +   +E+ V+  G+
Sbjct: 190 AAMLADEVAVMLNGR 204

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 74.0 bits (181), Expect = 2e-16
 Identities = 53/215 (24%), Positives = 99/215 (46%), Gaps = 22/215 (10%)

Query: 56  ISFSDASFGYPGGPIL-FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
           I   + S  +  G ++   N+N  I+   R  ++GP+G GK+T +++IAG   PS+G ++
Sbjct: 4   IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63

Query: 115 --------------RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRA---H 157
                              +I +  Q      +L++   +        + ++++R     
Sbjct: 64  FDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEE 123

Query: 158 LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD---LDAVEALI 214
           +       ++       LSG Q+ RVA A+   K P ++LLDEP ++LD    D+  AL+
Sbjct: 124 VAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALV 183

Query: 215 QGLVLFQGG-ILMVSHDEHLISGSVEELWVVSEGK 248
           + +    G  +L+VSHD   I    + + V+ +GK
Sbjct: 184 KEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGK 218

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

 Score = 72.7 bits (177), Expect = 2e-16
 Identities = 20/167 (11%), Positives = 50/167 (29%), Gaps = 14/167 (8%)

Query: 84  RIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMM 143
           +I + G  G+GK+T++K I   L   +   +           +     +           
Sbjct: 2   KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTE------GK 55

Query: 144 RCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN 203
           +          +  +GS+GV         +          A+ +    +  +I++DE   
Sbjct: 56  KKIFSSKFFTSKKLVGSYGVN-----VQYFEELAIPILERAYREAKKDRRKVIIIDEIGK 110

Query: 204 HLDL--DAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGK 248
                    + + Q +      ++       +    V+E+  +    
Sbjct: 111 MELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHP-LVKEIRRLPGAV 156

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

 Score = 70.9 bits (173), Expect = 3e-15
 Identities = 49/208 (23%), Positives = 84/208 (40%), Gaps = 17/208 (8%)

Query: 55  IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 114
           +I     S  +    +   NL+  ++      ++GP G GK+  L+LIAG   P SG + 
Sbjct: 1   MIEIESLSRKWKNFSL--DNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL 58

Query: 115 RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGV----------PEQKLRAHLGSFGVT 164
              K    +  + H       +  L   M     +            +++        + 
Sbjct: 59  LDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIE 118

Query: 165 GNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD---LDAVEALIQGLVLFQ 221
             L   P+ TLSGG++ RVA A+     P I+LLDEP + LD    +    ++  L    
Sbjct: 119 HLLDRNPL-TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKN 177

Query: 222 G-GILMVSHDEHLISGSVEELWVVSEGK 248
              +L ++HD+       + + VV +GK
Sbjct: 178 KLTVLHITHDQTEARIMADRIAVVMDGK 205

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	266
d2awna2	232	Maltose transport protein MalK, N-terminal domain	100.0
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	100.0
d1g2912	240	Maltose transport protein MalK, N-terminal domain	100.0
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	100.0
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	100.0
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	100.0
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	100.0
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	100.0
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	100.0
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	100.0
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	100.0
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	100.0
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	100.0
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	100.0
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	100.0
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	100.0
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	100.0
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.9
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	99.8
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.44
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	99.18
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	99.13
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	98.75
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	98.59
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	98.46
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	98.12
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	98.02
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.85
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.82
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.78
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	97.76
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	97.72
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.72
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.69
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.63
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.61
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	97.6
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.6
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.6
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.58
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.56
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.54
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.5
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	97.49
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.47
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.46
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.45
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.44
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.4
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.39
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.39
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.38
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.3
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.3
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.27
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.24
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.22
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	97.19
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	97.19
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	97.18
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.17
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.14
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	97.14
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	97.14
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	97.12
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.12
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	97.11
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	97.11
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	97.1
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	97.07
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.07
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.06
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	97.05
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.05
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.05
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.05
d1nrjb_	209	Signal recognition particle receptor beta-subunit	97.02
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	97.02
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	96.98
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.98
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	96.96
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	96.95
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	96.94
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.93
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	96.93
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.91
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.91
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.9
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.89
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	96.86
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.86
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.84
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.82
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.81
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.79
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.79
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.77
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.76
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	96.74
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.74
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.73
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	96.73
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.73
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.71
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	96.71
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.71
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.71
d1okkd2	207	GTPase domain of the signal recognition particle r	96.69
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.68
d2fh5b1	207	Signal recognition particle receptor beta-subunit	96.68
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.67
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	96.66
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.65
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.61
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.61
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.6
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	96.6
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	96.6
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	96.59
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	96.59
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.57
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	96.57
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.54
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	96.54
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.54
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.49
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.48
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.48
d2qy9a2	211	GTPase domain of the signal recognition particle r	96.48
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.48
d1vmaa2	213	GTPase domain of the signal recognition particle r	96.47
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.47
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	96.46
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.43
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	96.43
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	96.4
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.39
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	96.39
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	96.38
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.38
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	96.38
d1ls1a2	207	GTPase domain of the signal sequence recognition p	96.38
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	96.37
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.37
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.32
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	96.32
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	96.32
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.31
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	96.29
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	96.29
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	96.27
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	96.26
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	96.26
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	96.25
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	96.25
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.25
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	96.25
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	96.25
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	96.24
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	96.24
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	96.18
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.17
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.15
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	96.13
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	96.13
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	96.12
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	96.12
d1j8yf2	211	GTPase domain of the signal sequence recognition p	96.09
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.08
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	96.05
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	96.05
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	96.04
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.04
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	96.02
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.02
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	96.02
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.02
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	96.01
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	96.01
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	96.01
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	95.99
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	95.99
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.97
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	95.96
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	95.92
d1xpua3	289	Transcription termination factor Rho, ATPase domai	95.91
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	95.87
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.86
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	95.85
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	95.81
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.81
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	95.8
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	95.79
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	95.77
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	95.74
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	95.68
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.64
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	95.58
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	95.57
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.57
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	95.57
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.51
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	95.51
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.49
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	95.42
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.33
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	95.24
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.16
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	95.03
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.0
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.81
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	94.8
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	94.78
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	94.78
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	94.77
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	94.76
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	94.54
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	94.51
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	94.5
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	94.47
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	94.38
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	94.2
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	94.15
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	94.12
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	93.97
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	93.97
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	93.67
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	93.5
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	92.96
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	92.95
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	92.94
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	92.9
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	92.87
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	92.68
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	92.6
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	92.54
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	92.52
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	92.31
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	92.24
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	92.02
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	91.94
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	91.75
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	90.85
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	90.84
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	89.96
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	89.8
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	89.78
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	89.64
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	89.59
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	89.45
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	89.25
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	89.09
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	89.04
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	88.34
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	88.3
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	88.29
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	88.02
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	87.74
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	87.27
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	86.26
d1tuea_	205	Replication protein E1 helicase domain {Human papi	84.65
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	84.08
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	83.81
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	82.68
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	82.57
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	82.47
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	80.87

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.2e-58  Score=388.49  Aligned_cols=201  Identities=23%  Similarity=0.323  Sum_probs=148.1

Q ss_pred             EEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------eeEEEEec
Q 024529           56 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFSQ  126 (266)
Q Consensus        56 l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~i~~~~q  126 (266)
                      |+++||+|+| ++..+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++++         ..+||+||
T Consensus         1 Iev~nv~k~y-g~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q   79 (232)
T d2awna2           1 VQLQNVTKAW-GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQ   79 (232)
T ss_dssp             EEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEECS
T ss_pred             CEEEEEEEEE-CCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchhhceeeeecc
Confidence            6899999999 4667999999999999999999999999999999999999999999998874         35999999


Q ss_pred             cccCCCCCCCcHHHHHHH--hC----CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeC
Q 024529          127 HHVDGLDLSSNPLLYMMR--CF----PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE  200 (266)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDE  200 (266)
                      ++..  ....++.+++..  ..    .....+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++|||||
T Consensus        80 ~~~l--~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~-~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDE  156 (232)
T d2awna2          80 SYAL--YPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH-LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDE  156 (232)
T ss_dssp             SCCC-----------------------CHHHHHHHHHHHHC----------------------CHHHHHHTCCSEEEEES
T ss_pred             cccc--ccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChh-hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            9732  222333333221  11    1123467899999999974 6788999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          201 PSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       201 Pt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      ||++||+.++.++++.|.+    .+.|||+||||++++..+|||+++|++|+++ ..|+++++..
T Consensus       157 Pts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv-~~G~~~el~~  220 (232)
T d2awna2         157 PLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVA-QVGKPLELYH  220 (232)
T ss_dssp             TTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEeCHHHHHh
Confidence            9999999999888877654    4779999999999999999999999999997 6799888743

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=1.3e-57  Score=387.87  Aligned_cols=201  Identities=22%  Similarity=0.318  Sum_probs=171.1

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee---------eEEEEe
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV---------RIAVFS  125 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~---------~i~~~~  125 (266)
                      .|+++||+++| ++..+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++++.         .+||+|
T Consensus         6 ~I~v~nlsk~y-g~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~   84 (239)
T d1v43a3           6 EVKLENLTKRF-GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF   84 (239)
T ss_dssp             CEEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEE
T ss_pred             eEEEEEEEEEE-CCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcccceEEEEe
Confidence            48999999999 46779999999999999999999999999999999999999999999998752         499999


Q ss_pred             ccccCCCCCCCcHHHHHHHhC--CCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 024529          126 QHHVDGLDLSSNPLLYMMRCF--PGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD  199 (266)
Q Consensus       126 q~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLD  199 (266)
                      |++.  +....++.+++....  .+.+    .+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|+|||||
T Consensus        85 Q~~~--l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllD  161 (239)
T d1v43a3          85 QSYA--VWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEE-LLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMD  161 (239)
T ss_dssp             C--------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGG-GTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEE
T ss_pred             echh--hcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-hhcCChhhCCHHHHHHHHHHhhhccCCCceeec
Confidence            9863  334456666654321  1222    456788999999974 678899999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          200 EPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       200 EPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      |||++||+.++..+++.+.+    .+.|||+||||++++..+|||+++|++|+++ ..|+++++.
T Consensus       162 EPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv-~~G~~~el~  225 (239)
T d1v43a3         162 EPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLL-QIGSPTEVY  225 (239)
T ss_dssp             STTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence            99999999999988877654    3789999999999999999999999999997 689988874

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=100.00  E-value=4.2e-57  Score=385.19  Aligned_cols=202  Identities=25%  Similarity=0.342  Sum_probs=173.0

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------------e
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------V  119 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------------~  119 (266)
                      .|+++||+|+| ++..+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|++++.               .
T Consensus         3 ~i~v~nl~k~y-g~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r   81 (240)
T d1g2912           3 GVRLVDVWKVF-GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDR   81 (240)
T ss_dssp             EEEEEEEEEEE-TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGS
T ss_pred             cEEEEeEEEEE-CCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccccc
Confidence            58999999999 4567999999999999999999999999999999999999999999998773               2


Q ss_pred             eEEEEeccccCCCCCCCcHHHHHHHh--CCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCC
Q 024529          120 RIAVFSQHHVDGLDLSSNPLLYMMRC--FPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP  193 (266)
Q Consensus       120 ~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p  193 (266)
                      .+||++|++.  +....++.+++...  ..+.+    .+++.++++.+++.+ ..++++++|||||||||+|||||+.+|
T Consensus        82 ~ig~v~Q~~~--L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~-~~~~~p~~LSGGqkQRv~IAraL~~~P  158 (240)
T d1g2912          82 DIAMVFQSYA--LYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTE-LLNRKPRELSGGQRQRVALGRAIVRKP  158 (240)
T ss_dssp             SEEEECSCCC--CCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGG-GTTCCGGGSCHHHHHHHHHHHHHHTCC
T ss_pred             cceecccchh--hcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChh-HhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence            5999999973  33344555544321  11222    356888999999975 678899999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          194 HIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       194 ~lllLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      +||||||||+|||+.++..+++.|.+    .+.|||+||||++++..+|||+++|++|+++ ..|+++++..
T Consensus       159 ~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv-~~G~~~el~~  229 (240)
T d1g2912         159 QVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQ-QVGSPDEVYD  229 (240)
T ss_dssp             SEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred             CEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence            99999999999999999988887754    4789999999999999999999999999997 6799888743

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=100.00  E-value=5.4e-57  Score=381.71  Aligned_cols=200  Identities=27%  Similarity=0.327  Sum_probs=173.2

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------eeEEEEe
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS  125 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~i~~~~  125 (266)
                      ||+++||+|+|+ + .+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.         ..+||+|
T Consensus         1 mi~v~nlsk~y~-~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v~   78 (229)
T d3d31a2           1 MIEIESLSRKWK-N-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVY   78 (229)
T ss_dssp             CEEEEEEEEECS-S-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEEC
T ss_pred             CEEEEEEEEEeC-C-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchhHhcceeec
Confidence            589999999995 3 4899999999999999999999999999999999999999999999875         2599999


Q ss_pred             ccccCCCCCCCcHHHHHH---HhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCC
Q 024529          126 QHHVDGLDLSSNPLLYMM---RCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS  202 (266)
Q Consensus       126 q~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt  202 (266)
                      |++.  +....++.+++.   ........+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++|||||||
T Consensus        79 Q~~~--l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPt  155 (229)
T d3d31a2          79 QNYS--LFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEH-LLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPL  155 (229)
T ss_dssp             TTCC--CCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTT-TTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSS
T ss_pred             cccc--cCccccHHHHHHHHHhhccccHHHHHHHHHHHhcchh-hHhCChhhCCHHHhcchhhhhhhhccCCceeecCCC
Confidence            9864  333445555442   1122235678999999999974 678899999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          203 NHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       203 ~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      ++||+.++.++++.+++    .+.|||+||||++++..+|||+++|++|+++ +.|+++++.
T Consensus       156 s~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv-~~g~~~el~  216 (229)
T d3d31a2         156 SALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLI-QVGKPEEIF  216 (229)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEE-EEECHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence            99999999888777654    4679999999999999999999999999997 789998874

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=1.3e-56  Score=382.03  Aligned_cols=202  Identities=25%  Similarity=0.335  Sum_probs=173.8

Q ss_pred             cEEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe--------------e
Q 024529           55 IISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------V  119 (266)
Q Consensus        55 ~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------~  119 (266)
                      .|+++||++.|+++ ..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++++              .
T Consensus         3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr   82 (242)
T d1oxxk2           3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR   82 (242)
T ss_dssp             CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred             EEEEEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhc
Confidence            58999999999643 46899999999999999999999999999999999999999999998774              2


Q ss_pred             eEEEEeccccCCCCCCCcHHHHHHHh--CCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCC
Q 024529          120 RIAVFSQHHVDGLDLSSNPLLYMMRC--FPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP  193 (266)
Q Consensus       120 ~i~~~~q~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p  193 (266)
                      .+||+||++.  +....++.+++...  ..+.+    .+++.++++.+++. ...++++.+|||||||||+|||||+.+|
T Consensus        83 ~ig~vfQ~~~--L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~p~~LSGGqkQRvaiARaL~~~P  159 (242)
T d1oxxk2          83 KIGMVFQTWA--LYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIH-HVLNHFPRELSGAQQQRVALARALVKDP  159 (242)
T ss_dssp             CEEEEETTSC--CCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred             cceEEecccc--ccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChH-hhhhCChhhCCHHHHhHHHHHhHHhhcc
Confidence            5999999863  33345666665432  11222    45688999999997 4678899999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          194 HIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       194 ~lllLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      ++|||||||++||+.+...+++.+++    .+.|||+||||++++..+|||+++|++|+++ ..|+++++.
T Consensus       160 ~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv-~~g~~~el~  229 (242)
T d1oxxk2         160 SLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLV-QVGKPEDLY  229 (242)
T ss_dssp             SEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred             cceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence            99999999999999998888776654    3779999999999999999999999999997 689988874

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7.4e-57  Score=383.64  Aligned_cols=201  Identities=22%  Similarity=0.316  Sum_probs=172.3

Q ss_pred             cEEEEeeEEEcCCCC---cceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee------------
Q 024529           55 IISFSDASFGYPGGP---ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV------------  119 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~---~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~------------  119 (266)
                      ||+++||++.|+++.   .+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.+++..            
T Consensus         1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~   80 (240)
T d3dhwc1           1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA   80 (240)
T ss_dssp             CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHH
T ss_pred             CEEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhh
Confidence            689999999996542   57999999999999999999999999999999999999999999998752            


Q ss_pred             --eEEEEeccccCCCCCCCcHHHHHHH--hCCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHcc
Q 024529          120 --RIAVFSQHHVDGLDLSSNPLLYMMR--CFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK  191 (266)
Q Consensus       120 --~i~~~~q~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~  191 (266)
                        .+||+||++.  +....++.+++..  ...+    ...+++.++|+.+|+.+ ..++++.+|||||||||+|||||+.
T Consensus        81 rr~ig~VfQ~~~--l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~-~~~~~~~~LSGG~~QRvaiAraL~~  157 (240)
T d3dhwc1          81 RRQIGMIFQHFN--LLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD-KHDSYPSNLSGGQKQRVAIARALAS  157 (240)
T ss_dssp             HHHEEECCSSCC--CCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTT-TTSSCBSCCCHHHHHHHHHHHHHHT
T ss_pred             hccccccccccc--cCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-hhhCChhhCCHHHHHHHHHhhhhcc
Confidence              4999999863  3344556555432  1111    12467889999999975 5688999999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529          192 KPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  259 (266)
Q Consensus       192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  259 (266)
                      +|++|||||||++||+.++..+++.|++    .+.|||+||||++++..+|||+++|++|+++ ..|+++++
T Consensus       158 ~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv-~~G~~~ei  228 (240)
T d3dhwc1         158 NPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELI-EQDTVSEV  228 (240)
T ss_dssp             CCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEE-EEEETTTT
T ss_pred             CCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEE-EECCHHHH
Confidence            9999999999999999999988887754    3779999999999999999999999999997 67887765

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=1.2e-56  Score=380.31  Aligned_cols=197  Identities=25%  Similarity=0.328  Sum_probs=165.7

Q ss_pred             cEEEEeeEEEcCCCC---cceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee------------
Q 024529           55 IISFSDASFGYPGGP---ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV------------  119 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~---~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~------------  119 (266)
                      ||+++||+|.|+.+.   .+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|++++..            
T Consensus         1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~   80 (230)
T d1l2ta_           1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI   80 (230)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred             CEEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchh
Confidence            689999999996432   47999999999999999999999999999999999999999999998741            


Q ss_pred             ---eEEEEeccccCCCCCCCcHHHHHHH--h---CCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHH
Q 024529          120 ---RIAVFSQHHVDGLDLSSNPLLYMMR--C---FPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAK  187 (266)
Q Consensus       120 ---~i~~~~q~~~~~~~~~~~~~~~~~~--~---~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAr  187 (266)
                         .+||++|++.  +....++.+++..  .   ....+    .+++.++|+.+++.+...++++.+|||||||||+|||
T Consensus        81 r~~~ig~v~Q~~~--l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAr  158 (230)
T d1l2ta_          81 RRDKIGFVFQQFN--LIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIAR  158 (230)
T ss_dssp             HHHHEEEECTTCC--CCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred             hcceEEEEecchh--hCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHh
Confidence               4999999863  3334455554332  1   11222    3457788999999866678889999999999999999


Q ss_pred             HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCC
Q 024529          188 ITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGT  255 (266)
Q Consensus       188 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~  255 (266)
                      ||+.+|+||||||||++||+.++..+++.|++    .+.|||+||||++++ ++|||+++|++|+++ .+|+
T Consensus       159 aL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a-~~~drv~~m~~G~Iv-~~g~  228 (230)
T d1l2ta_         159 ALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVE-REEK  228 (230)
T ss_dssp             HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHH-TTSSEEEEEETTEEE-EEEE
T ss_pred             hhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHH-HhCCEEEEEECCEEE-Eecc
Confidence            99999999999999999999999999887764    367999999999987 699999999999997 4554

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=3.9e-55  Score=377.91  Aligned_cols=202  Identities=23%  Similarity=0.330  Sum_probs=171.8

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee---------------
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV---------------  119 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~---------------  119 (266)
                      .|+++||+|+| ++..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|..               
T Consensus         2 ~Lev~nl~k~y-g~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~   80 (258)
T d1b0ua_           2 KLHVIDLHKRY-GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVAD   80 (258)
T ss_dssp             CEEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESC
T ss_pred             eEEEEEEEEEE-CCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhccccc
Confidence            48999999999 45679999999999999999999999999999999999999999999987742               


Q ss_pred             ---------eEEEEeccccCCCCCCCcHHHHHHH---hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHH
Q 024529          120 ---------RIAVFSQHHVDGLDLSSNPLLYMMR---CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRV  183 (266)
Q Consensus       120 ---------~i~~~~q~~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv  183 (266)
                               ++||+||++.  +....++.+++..   .....+    .+++.++++.+++.+...++++.+|||||+|||
T Consensus        81 ~~~~~~~r~~ig~vfQ~~~--l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv  158 (258)
T d1b0ua_          81 KNQLRLLRTRLTMVFQHFN--LWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRV  158 (258)
T ss_dssp             HHHHHHHHHHEEEECSSCC--CCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHH
T ss_pred             HhHHHHHhcceEEEEechh--hccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHH
Confidence                     4899999863  3334455444321   122222    356788999999986666778899999999999


Q ss_pred             HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          184 AFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       184 ~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      +|||||+.+|++|||||||+|||+.++.++++.|++   .+.|||+||||++++..+||||++|++|+++ +.|+++++.
T Consensus       159 ~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv-~~g~~~ev~  237 (258)
T d1b0ua_         159 SIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE-EEGDPEQVF  237 (258)
T ss_dssp             HHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred             HHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence            999999999999999999999999999888777654   4679999999999999999999999999997 678888764

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=100.00  E-value=3.4e-55  Score=374.95  Aligned_cols=203  Identities=19%  Similarity=0.266  Sum_probs=169.2

Q ss_pred             CCcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee------------e
Q 024529           53 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV------------R  120 (266)
Q Consensus        53 ~~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~------------~  120 (266)
                      ..+|+++||+++| ++..+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|..            .
T Consensus         4 d~~Lev~~l~k~y-g~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~g   82 (240)
T d1ji0a_           4 DIVLEVQSLHVYY-GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG   82 (240)
T ss_dssp             SEEEEEEEEEEEE-TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred             ceEEEEeeEEEEE-CCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhc
Confidence            4689999999999 45679999999999999999999999999999999999999999999998852            3


Q ss_pred             EEEEeccccCCCCCCCcHHHHHHHh-CC--CC--cHHHHHHHHHhc-CCCcccccCCCCCCChHHHHHHHHHHHHccCCC
Q 024529          121 IAVFSQHHVDGLDLSSNPLLYMMRC-FP--GV--PEQKLRAHLGSF-GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH  194 (266)
Q Consensus       121 i~~~~q~~~~~~~~~~~~~~~~~~~-~~--~~--~~~~~~~~l~~~-~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~  194 (266)
                      ++|++|+..  +....++.+++... ..  ..  ..+.+..+++.+ ++. ...++++++|||||||||+|||||+.+|+
T Consensus        83 i~~~~q~~~--l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~LSGG~~Qrv~iAraL~~~P~  159 (240)
T d1ji0a_          83 IALVPEGRR--IFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLK-ERLKQLGGTLSGGEQQMLAIGRALMSRPK  159 (240)
T ss_dssp             EEEECSSCC--CCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHH-TTTTSBSSSSCHHHHHHHHHHHHHTTCCS
T ss_pred             ccccCcccc--cCCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhChH-HHHhCchhhCCHHHHHHHHHHHHHHhCCC
Confidence            899999863  23334555554321 11  11  133455566665 454 45678899999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          195 IILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       195 lllLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      +|||||||+|||+.++.++++.+++   .+.|||+||||++++..+|||+++|++|+++ +.|+++++.
T Consensus       160 lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv-~~g~~~el~  227 (240)
T d1ji0a_         160 LLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIV-LEGKASELL  227 (240)
T ss_dssp             EEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEE-EEEEHHHHH
T ss_pred             EeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHh
Confidence            9999999999999999888777654   4679999999999999999999999999997 789998875

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=8.9e-55  Score=371.72  Aligned_cols=204  Identities=22%  Similarity=0.291  Sum_probs=172.4

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe----------eeEEEE
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVF  124 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~i~~~  124 (266)
                      .|+++||+++| +++.+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+++.          ..++|+
T Consensus         2 aI~v~nl~k~y-g~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~v   80 (238)
T d1vpla_           2 AVVVKDLRKRI-GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYL   80 (238)
T ss_dssp             CEEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEE
T ss_pred             CEEEEeEEEEE-CCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccChHHHHhhEeEe
Confidence            38899999999 5677999999999999999999999999999999999999999999998874          359999


Q ss_pred             eccccCCCCCCCcHHHHHH---HhCCCC---cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEE
Q 024529          125 SQHHVDGLDLSSNPLLYMM---RCFPGV---PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILL  198 (266)
Q Consensus       125 ~q~~~~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllL  198 (266)
                      ||...  +....+..+++.   ..+...   ..+.+..+++.+++.+ ..++++++||||||||++|||||+.+|++|||
T Consensus        81 pq~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~lSgG~~qrv~iA~al~~~p~illL  157 (238)
T d1vpla_          81 PEEAG--AYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGE-KIKDRVSTYSKGMVRKLLIARALMVNPRLAIL  157 (238)
T ss_dssp             CTTCC--CCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGG-GGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             eeccc--cCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHH-HHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence            99853  233344444432   111111   1345677888899974 56788999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHHHH
Q 024529          199 DEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKML  263 (266)
Q Consensus       199 DEPt~~LD~~~~~~l~~~l~~---~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~  263 (266)
                      ||||+|||+.++..+++.+++   .+.|||++|||++++..+||||++|++|+++ +.|+++++.+..
T Consensus       158 DEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv-~~g~~~el~~~~  224 (238)
T d1vpla_         158 DEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIV-ETGTVEELKERY  224 (238)
T ss_dssp             ESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEE-EEEEHHHHHHHT
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHhcc
Confidence            999999999999888777754   4679999999999999999999999999997 789999987643

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=1e-54  Score=375.17  Aligned_cols=203  Identities=20%  Similarity=0.258  Sum_probs=170.7

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee------------eE
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV------------RI  121 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~------------~i  121 (266)
                      .+|+++||+++|+ +..+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++++.            .+
T Consensus         3 ~iL~v~nlsk~yg-~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi   81 (254)
T d1g6ha_           3 EILRTENIVKYFG-EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI   81 (254)
T ss_dssp             EEEEEEEEEEEET-TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred             ceEEEEEEEEEEC-CeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcC
Confidence            4799999999994 5679999999999999999999999999999999999999999999998852            49


Q ss_pred             EEEeccccCCCCCCCcHHHHHHHh----------------C-CCC--cHHHHHHHHHhcCCCcccccCCCCCCChHHHHH
Q 024529          122 AVFSQHHVDGLDLSSNPLLYMMRC----------------F-PGV--PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSR  182 (266)
Q Consensus       122 ~~~~q~~~~~~~~~~~~~~~~~~~----------------~-~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqR  182 (266)
                      +|+||++...  ...++.+++...                . ...  ..+++.++++.+++.. ..++++++||||||||
T Consensus        82 ~~v~Q~~~~~--~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~Qr  158 (254)
T d1g6ha_          82 VRTFQTPQPL--KEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSH-LYDRKAGELSGGQMKL  158 (254)
T ss_dssp             EECCCCCGGG--GGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGG-GTTSBGGGSCHHHHHH
T ss_pred             CccCCccccC--CCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcch-hccCchhhCCcHHHHH
Confidence            9999987422  223444443210                0 011  1245778899999974 5678999999999999


Q ss_pred             HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHh---hcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHH
Q 024529          183 VAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV---LFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  259 (266)
Q Consensus       183 v~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~---~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  259 (266)
                      |+|||||+.+|++|||||||+|||+.++..+++.+.   +.+.|||+||||++++..+||||++|++|+++ +.|++++.
T Consensus       159 v~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv-~~g~~~e~  237 (254)
T d1g6ha_         159 VEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQII-AEGRGEEE  237 (254)
T ss_dssp             HHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEE-EEEESHHH
T ss_pred             HHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEE-EEecHHHH
Confidence            999999999999999999999999999988877764   44679999999999999999999999999997 67888875


Q ss_pred             HH
Q 024529          260 KK  261 (266)
Q Consensus       260 ~~  261 (266)
                      .+
T Consensus       238 ~~  239 (254)
T d1g6ha_         238 IK  239 (254)
T ss_dssp             HH
T ss_pred             hh
Confidence            44

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=100.00  E-value=1.5e-54  Score=371.29  Aligned_cols=202  Identities=22%  Similarity=0.355  Sum_probs=166.5

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEEE
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV  123 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~  123 (266)
                      ||+++||+|+|++.+.+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+++.           ..++|
T Consensus         1 mle~knvsf~Y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~   80 (242)
T d1mv5a_           1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF   80 (242)
T ss_dssp             CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred             CEEEEEEEEECCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheEE
Confidence            6899999999977677999999999999999999999999999999999999999999999874           25899


Q ss_pred             EeccccCCCCCCCcHHHHHHHh-CCCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHHccC
Q 024529          124 FSQHHVDGLDLSSNPLLYMMRC-FPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFKK  192 (266)
Q Consensus       124 ~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqRv~lAral~~~  192 (266)
                      ++|++..   +..+..+++... ........+.+.++..++.+...          ...+..|||||||||+|||||+.+
T Consensus        81 v~Q~~~l---f~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~  157 (242)
T d1mv5a_          81 VSQDSAI---MAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRN  157 (242)
T ss_dssp             ECCSSCC---CCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHC
T ss_pred             Ecccccc---CCcchhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcC
Confidence            9998742   334566655322 12344556666666555432211          123467999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          193 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       193 p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      |+|||||||||+||+.+...+++.|.+.  +.|||+||||++.+. .||+|++|++|+++ ..|+++++.+
T Consensus       158 p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~-~~D~i~vl~~G~iv-~~G~~~eLl~  226 (242)
T d1mv5a_         158 PKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV-DADKIYFIEKGQIT-GSGKHNELVA  226 (242)
T ss_dssp             CSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH-HCSEEEEEETTEEC-CCSCHHHHHH
T ss_pred             CCEEEecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH-hCCEEEEEECCEEE-EECCHHHHHh
Confidence            9999999999999999988888887654  679999999999886 59999999999997 7899998754

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.4e-53  Score=364.80  Aligned_cols=201  Identities=24%  Similarity=0.426  Sum_probs=169.0

Q ss_pred             EEEEeeEEEcCC-CCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEEE
Q 024529           56 ISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV  123 (266)
Q Consensus        56 l~~~~l~~~y~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~  123 (266)
                      |+++||+|+|++ .+.+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+++.           ..++|
T Consensus         2 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~   81 (241)
T d2pmka1           2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGV   81 (241)
T ss_dssp             EEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEE
T ss_pred             eEEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEEE
Confidence            789999999964 456899999999999999999999999999999999999999999999885           25999


Q ss_pred             EeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcc----------cccCCCCCCChHHHHHHHHHHHHccCC
Q 024529          124 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGN----------LALQPMYTLSGGQKSRVAFAKITFKKP  193 (266)
Q Consensus       124 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkqRv~lAral~~~p  193 (266)
                      ++|++.   .+..+..+++....+....+++..+++..++.+.          .....+..|||||||||+|||||+.+|
T Consensus        82 v~Q~~~---lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p  158 (241)
T d2pmka1          82 VLQDNV---LLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP  158 (241)
T ss_dssp             ECSSCC---CTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred             Eecccc---cCCccccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhccc
Confidence            999874   2345777776544444566666666665554321          123446799999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          194 HIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       194 ~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      +|||||||||+||+.+...+++.|.+.  +.|+|+||||++.+. .||+|++|++|+++ ..|+++++.+
T Consensus       159 ~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~-~~D~i~vl~~G~Iv-~~G~~~ell~  226 (241)
T d2pmka1         159 KILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK-NADRIIVMEKGKIV-EQGKHKELLS  226 (241)
T ss_dssp             SEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT-TSSEEEEEETTEEE-EEECHHHHHH
T ss_pred             chhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHH-hCCEEEEEECCEEE-EECCHHHHHh
Confidence            999999999999999999999988764  569999999999885 69999999999997 6799888754

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=9.6e-53  Score=362.32  Aligned_cols=202  Identities=24%  Similarity=0.341  Sum_probs=168.6

Q ss_pred             cEEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEE
Q 024529           55 IISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA  122 (266)
Q Consensus        55 ~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~  122 (266)
                      -|+++||+|+|++. .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+++.           ..++
T Consensus        13 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~   92 (253)
T d3b60a1          13 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVA   92 (253)
T ss_dssp             CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEE
T ss_pred             EEEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhheEE
Confidence            49999999999754 46999999999999999999999999999999999999999999999874           2599


Q ss_pred             EEeccccCCCCCCCcHHHHHHHh-CCCCcHHHHHHHHHhcCCCcc----------cccCCCCCCChHHHHHHHHHHHHcc
Q 024529          123 VFSQHHVDGLDLSSNPLLYMMRC-FPGVPEQKLRAHLGSFGVTGN----------LALQPMYTLSGGQKSRVAFAKITFK  191 (266)
Q Consensus       123 ~~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkqRv~lAral~~  191 (266)
                      |++|++..   +..+...+.... ....+.+++.++++..++.+.          .....+..|||||||||+|||||+.
T Consensus        93 ~v~Q~~~l---~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~  169 (253)
T d3b60a1          93 LVSQNVHL---FNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR  169 (253)
T ss_dssp             EECSSCCC---CSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH
T ss_pred             EEeecccc---CCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhc
Confidence            99998742   234555554322 224566777777766655322          1234567899999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          192 KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      +|+|||||||||+||+.+...+++.|.+.  +.|+|+||||++.+. .||+|++|++|+++ ..|+++++.+
T Consensus       170 ~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~-~~D~v~vl~~G~Iv-~~G~~~eLl~  239 (253)
T d3b60a1         170 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGIIV-ERGTHSELLA  239 (253)
T ss_dssp             CCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEETTEEE-EEECHHHHHH
T ss_pred             CCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHH-hCCEEEEEECCEEE-EECCHHHHHh
Confidence            99999999999999999999999988764  679999999999886 69999999999997 6899998765

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-52  Score=358.90  Aligned_cols=202  Identities=24%  Similarity=0.404  Sum_probs=164.0

Q ss_pred             cEEEEeeEEEcCCC--CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeE
Q 024529           55 IISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI  121 (266)
Q Consensus        55 ~l~~~~l~~~y~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i  121 (266)
                      .|+++||+|+|++.  ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|++++.           ..+
T Consensus        11 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i   90 (251)
T d1jj7a_          11 LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQV   90 (251)
T ss_dssp             CEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHE
T ss_pred             eEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHHHHh
Confidence            59999999999753  35899999999999999999999999999999999999999999999885           259


Q ss_pred             EEEeccccCCCCCCCcHHHHHHHhC-CCCcHHHHHH---------HHHhc--CCCcccccCCCCCCChHHHHHHHHHHHH
Q 024529          122 AVFSQHHVDGLDLSSNPLLYMMRCF-PGVPEQKLRA---------HLGSF--GVTGNLALQPMYTLSGGQKSRVAFAKIT  189 (266)
Q Consensus       122 ~~~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---------~l~~~--~l~~~~~~~~~~~LSgGqkqRv~lAral  189 (266)
                      +|++|++..   +..+..+++.... .........+         .++.+  ++. ...++.+.+|||||||||+|||||
T Consensus        91 ~~v~Q~~~l---f~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-~~i~~~~~~LSGGqkQRvaiARal  166 (251)
T d1jj7a_          91 AAVGQEPQV---FGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYD-TEVDEAGSQLSGGQRQAVALARAL  166 (251)
T ss_dssp             EEECSSCCC---CSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGG-CBCCSSCSSSCHHHHHHHHHHHHH
T ss_pred             hhccccccc---cCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccch-hhHhccCccCChhHceEEEEeecc
Confidence            999999742   3346666654322 1222223222         23332  222 223456689999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHHH
Q 024529          190 FKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM  262 (266)
Q Consensus       190 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~  262 (266)
                      +.+|+||||||||++||+.+...+++.|.+.    +.|+|+||||++.+. .||+|++|++|+++ ..|+++++.+.
T Consensus       167 ~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~-~aDrI~vl~~G~iv-~~Gt~~eLl~~  241 (251)
T d1jj7a_         167 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVE-QADHILFLEGGAIR-EGGTHQQLMEK  241 (251)
T ss_dssp             TTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHH-TCSEEEEEETTEEE-EEECHHHHHHH
T ss_pred             ccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEE-EECCHHHHHhC
Confidence            9999999999999999999999999988643    579999999999886 59999999999997 68999998653

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=2e-52  Score=360.09  Aligned_cols=202  Identities=24%  Similarity=0.388  Sum_probs=172.9

Q ss_pred             cEEEEeeEEEcCCC-CcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe-----------eeEE
Q 024529           55 IISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA  122 (266)
Q Consensus        55 ~l~~~~l~~~y~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~  122 (266)
                      .|+++||+|+|+++ .++|+||||+|++|+++||+||||||||||+++|+|+++|++|+|.+++.           ..++
T Consensus        16 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~   95 (255)
T d2hyda1          16 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIG   95 (255)
T ss_dssp             CEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEE
T ss_pred             EEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhheee
Confidence            59999999999754 56999999999999999999999999999999999999999999999874           3599


Q ss_pred             EEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHHccC
Q 024529          123 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFKK  192 (266)
Q Consensus       123 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqRv~lAral~~~  192 (266)
                      |++|++.   .+..+..+++....+....+++.++++.+++.+...          ...+..||||||||++|||||+.+
T Consensus        96 ~v~Q~~~---lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~~  172 (255)
T d2hyda1          96 LVQQDNI---LFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNN  172 (255)
T ss_dssp             EECSSCC---CCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHC
T ss_pred             eeecccc---CCCCCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhcC
Confidence            9999874   234577777755444556778888888887753221          123467999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          193 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       193 p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      |+|||||||||+||+.+...+++.|.+.  +.|+|+||||++.+. .||+|++|++|+++ ..|+++++.+
T Consensus       173 p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~-~~D~ii~l~~G~iv-~~G~~~eLl~  241 (255)
T d2hyda1         173 PPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTIT-HADKIVVIENGHIV-ETGTHRELIA  241 (255)
T ss_dssp             CSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTT-TCSEEEEEETTEEE-EEECHHHHHH
T ss_pred             CCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEE-EECCHHHHHh
Confidence            9999999999999999999999988764  569999999999886 69999999999997 6799988754

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=3.6e-52  Score=353.74  Aligned_cols=197  Identities=26%  Similarity=0.384  Sum_probs=166.4

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe---------eeEEEEe
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS  125 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~i~~~~  125 (266)
                      .|++ ++.++|+ +. -+ ||||++. +|+++|+||||||||||+|+|+|+++|++|+|.++|.         ..+||+|
T Consensus         2 ~l~v-~~~k~~g-~~-~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~   76 (240)
T d2onka1           2 FLKV-RAEKRLG-NF-RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVP   76 (240)
T ss_dssp             CEEE-EEEEEET-TE-EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCC
T ss_pred             EEEE-EEEEEEC-CE-EE-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHHHcCceeec
Confidence            3677 6789994 33 23 8999995 6899999999999999999999999999999999874         3699999


Q ss_pred             ccccCCCCCCCcHHHHHHHhCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 024529          126 QHHVDGLDLSSNPLLYMMRCFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP  201 (266)
Q Consensus       126 q~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEP  201 (266)
                      |++.  +....++.+++.......    ..+++.++++.+|+.+ ..++++.+|||||||||+|||||+.+|++||||||
T Consensus        77 Q~~~--l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~~-~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEP  153 (240)
T d2onka1          77 QDYA--LFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAH-LLDRKPARLSGGERQRVALARALVIQPRLLLLDEP  153 (240)
T ss_dssp             SSCC--CCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTT-TTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEEST
T ss_pred             cchh--hcccchhhHhhhhhhcccCHHHHHHHHHHHHHhcCcHh-hhhCChhhCCHHHHHHHHHHHHHhccCCceEecCc
Confidence            9863  333456666664332222    2356889999999974 67889999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          202 SNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       202 t~~LD~~~~~~l~~~l~~----~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      |+|||+.++..+++.+++    .+.|||+||||++++..+|||+++|++|+++ +.|+++++.
T Consensus       154 ts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii-~~G~~~el~  215 (240)
T d2onka1         154 LSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIV-EKGKLKELF  215 (240)
T ss_dssp             TSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred             cccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE-EEecHHHHh
Confidence            999999999988887754    3679999999999999999999999999997 689988874

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.6e-49  Score=338.27  Aligned_cols=197  Identities=24%  Similarity=0.325  Sum_probs=163.6

Q ss_pred             CcEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCee-----------eEE
Q 024529           54 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-----------RIA  122 (266)
Q Consensus        54 ~~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-----------~i~  122 (266)
                      .+|+++||+++|     .|+||||+|++||++||+||||||||||+++|+|+. |++|+|.++++.           ..+
T Consensus         2 ~il~~~dv~~~~-----~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~   75 (231)
T d1l7vc_           2 IVMQLQDVAEST-----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRA   75 (231)
T ss_dssp             EEEEEEEECCTT-----TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEE
T ss_pred             eEEEEECcccCc-----eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhce
Confidence            468999998655     589999999999999999999999999999999975 689999988752           378


Q ss_pred             EEeccccCCCCCCCcHHHHHHH-hCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHcc-------CCC
Q 024529          123 VFSQHHVDGLDLSSNPLLYMMR-CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK-------KPH  194 (266)
Q Consensus       123 ~~~q~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~-------~p~  194 (266)
                      |++|....  .+..+...++.. .......+.+.++++.+++.+ ..++++.+|||||||||+|||||++       +|+
T Consensus        76 ~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~  152 (231)
T d1l7vc_          76 YLSQQQTP--PFATPVWHYLTLHQHDKTRTELLNDVAGALALDD-KLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQ  152 (231)
T ss_dssp             EECSCCCC--CSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTT-TTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCC
T ss_pred             eeeccccC--CccccHHHHhhhccchhhHHHHHHHHHHhcCCHh-HhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCC
Confidence            88887532  223344443332 222345667888999999975 4678899999999999999999997       779


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHh---hcCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHH
Q 024529          195 IILLDEPSNHLDLDAVEALIQGLV---LFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  260 (266)
Q Consensus       195 lllLDEPt~~LD~~~~~~l~~~l~---~~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  260 (266)
                      ||||||||+|||+.+...+.+.++   +.+.|||+||||++++..+|||+++|++|+++ +.|+++++.
T Consensus       153 llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv-~~G~~~ev~  220 (231)
T d1l7vc_         153 LLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKML-ASGRREEVL  220 (231)
T ss_dssp             EEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEEC-CCSBHHHHS
T ss_pred             EEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEE-EECCHHHHh
Confidence            999999999999999888776665   44679999999999999999999999999996 789988873

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-47  Score=335.18  Aligned_cols=196  Identities=24%  Similarity=0.402  Sum_probs=154.5

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCC
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDL  134 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~  134 (266)
                      .+.++|+++   .++++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+++  +++|++|.+..   +
T Consensus        38 ~i~~~~~~~---~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g--~i~~v~Q~~~l---~  109 (281)
T d1r0wa_          38 NVSFSHLCL---VGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG--RVSFCSQFSWI---M  109 (281)
T ss_dssp             --CHHHHHH---TTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS--CEEEECSSCCC---C
T ss_pred             cEEEEEcCC---CCCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC--EEEEEeccccc---c
Confidence            355566653   235799999999999999999999999999999999999999999999887  48999998642   2


Q ss_pred             CCcHHHHHHHhCCCCcHHHHHHHHHhcCCCc----------ccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCC
Q 024529          135 SSNPLLYMMRCFPGVPEQKLRAHLGSFGVTG----------NLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNH  204 (266)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~  204 (266)
                      ..+..+++.... .........+++...+..          ......+.+|||||||||+|||||+.+|+||||||||++
T Consensus       110 ~~tv~eni~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~  188 (281)
T d1r0wa_         110 PGTIKENIIFGV-SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGY  188 (281)
T ss_dssp             SEEHHHHHTTTS-CCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCS
T ss_pred             Cceeeccccccc-cccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCcccc
Confidence            345666553222 234445555555443321          112344568999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHH-hh--cCCEEEEEecCHHHHHhhcCEEEEEeCCeEEecCCChhHHHH
Q 024529          205 LDLDAVEALIQGL-VL--FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  261 (266)
Q Consensus       205 LD~~~~~~l~~~l-~~--~~~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  261 (266)
                      ||+.+...+++.+ ..  .+.|+|+|||+++.+. .||||++|++|+++ +.|+++++..
T Consensus       189 LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~-~aDrI~vl~~G~i~-~~Gt~~eL~~  246 (281)
T d1r0wa_         189 LDVFTEEQVFESCVCKLMANKTRILVTSKMEHLR-KADKILILHQGSSY-FYGTFSELQS  246 (281)
T ss_dssp             SCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHH-TCSEEEEEETTEEE-EEECHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhhCCCEEEEEechHHHHH-hCCEEEEEECCEEE-EECCHHHHhc
Confidence            9999999998764 32  2569999999998875 79999999999997 6899998854

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=6.4e-47  Score=315.51  Aligned_cols=181  Identities=22%  Similarity=0.333  Sum_probs=145.7

Q ss_pred             cEEEEeeEEEcCCCCcceeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCe------eeEEEEeccc
Q 024529           55 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------VRIAVFSQHH  128 (266)
Q Consensus        55 ~l~~~~l~~~y~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------~~i~~~~q~~  128 (266)
                      .|+++||+++|+  +++|+||||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.      ..++|++|+.
T Consensus         2 ~lev~~ls~~y~--~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~~~   79 (200)
T d1sgwa_           2 KLEIRDLSVGYD--KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEI   79 (200)
T ss_dssp             EEEEEEEEEESS--SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSC
T ss_pred             eEEEEEEEEEeC--CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhHhcCcEEEEeecc
Confidence            489999999993  46899999999999999999999999999999999999999999999884      3689999986


Q ss_pred             cCCCCCCCcHHHHHH---HhC-CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCC
Q 024529          129 VDGLDLSSNPLLYMM---RCF-PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNH  204 (266)
Q Consensus       129 ~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~  204 (266)
                      ....  ..+..+++.   ..+ .....+++.+.++.+++.+ . ++++.+||||||||++|||||+.+|++|||||||+|
T Consensus        80 ~~~~--~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~g  155 (200)
T d1sgwa_          80 IVPR--KISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD-L-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVA  155 (200)
T ss_dssp             CCCT--TSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC-T-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTT
T ss_pred             cCCC--CcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCcc-c-ccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcccc
Confidence            4322  223333321   222 2455677888899988853 3 467889999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhhc---CC-EEEEEecCHHHHHhhcCEEEEEe
Q 024529          205 LDLDAVEALIQGLVLF---QG-GILMVSHDEHLISGSVEELWVVS  245 (266)
Q Consensus       205 LD~~~~~~l~~~l~~~---~~-tiiivtHd~~~~~~~~d~i~~l~  245 (266)
                      ||+.++..+++.+.+.   ++ +||+++|++    .+||++.+|+
T Consensus       156 LD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l----~~~D~~~~l~  196 (200)
T d1sgwa_         156 IDEDSKHKVLKSILEILKEKGIVIISSREEL----SYCDVNENLH  196 (200)
T ss_dssp             SCTTTHHHHHHHHHHHHHHHSEEEEEESSCC----TTSSEEEEGG
T ss_pred             cCHHHHHHHHHHHHHHHhCCCEEEEEEechh----hhcchhhhee
Confidence            9999998888776553   23 455555554    3799998875

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.80  E-value=4.6e-22  Score=159.74  Aligned_cols=156  Identities=13%  Similarity=0.125  Sum_probs=98.9

Q ss_pred             EEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGV  163 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l  163 (266)
                      .++|+||||||||||+++|+|.++|+.|.+...+.....+-.+.............. ..........     .....+.
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~   75 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKI-FSSKFFTSKK-----LVGSYGV   75 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEE-EEETTCCCSS-----EETTEEE
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHHHhhhhhhhhhhHHHHH-Hhhhhhhhhh-----hhhhhhc
Confidence            489999999999999999999999999998765422111111100000000000000 0000000000     0001111


Q ss_pred             CcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCC--CCHHHHHHHHHHHhhcCCEEEEEecCHHHHHhhcCEE
Q 024529          164 TGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNH--LDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEEL  241 (266)
Q Consensus       164 ~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~--LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~~~d~i  241 (266)
                           +.....+|+|+++|.++++++..+|+++++|||...  .+......+.+.+...+.++|+++|+... ..+|+++
T Consensus        76 -----~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~~~~~il~~~h~~~~-~~~~~~i  149 (178)
T d1ye8a1          76 -----NVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDV-HPLVKEI  149 (178)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCC-SHHHHHH
T ss_pred             -----CcchhhhhhhhhHHHHHHHHHhcCCCceeecCCCccchhhHHHHHHHHHHhccCCCEEEEEEccHHH-HHhhceE
Confidence                 112235899999999999999999999999997644  34556667777777778899999999865 4478898


Q ss_pred             EEEeCCeEEe
Q 024529          242 WVVSEGKATP  251 (266)
Q Consensus       242 ~~l~~G~i~~  251 (266)
                      ..+.+|+++.
T Consensus       150 ~~~~~~~i~~  159 (178)
T d1ye8a1         150 RRLPGAVLIE  159 (178)
T ss_dssp             HTCTTCEEEE
T ss_pred             EEEeCCEEEE
Confidence            8899999863

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.13  E-value=7.7e-11  Score=105.01  Aligned_cols=73  Identities=23%  Similarity=0.330  Sum_probs=60.7

Q ss_pred             CCCCCChHHHHHHHHHHHH----ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHHhhcCEEEE
Q 024529          171 PMYTLSGGQKSRVAFAKIT----FKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWV  243 (266)
Q Consensus       171 ~~~~LSgGqkqRv~lAral----~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivtHd~~~~~~~~d~i~~  243 (266)
                      +...||||||.+++||..+    ..++++++||||+++||+..+..+.+.|.+.   +.-+|++||++.++. .||+++.
T Consensus       329 ~~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~-~ad~~~~  407 (427)
T d1w1wa_         329 DMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFE-KSDALVG  407 (427)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHT-TCSEEEE
T ss_pred             hhhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHH-hcccEEE
Confidence            4467899999998877554    4678899999999999999999999888654   235999999999887 6899876


Q ss_pred             E
Q 024529          244 V  244 (266)
Q Consensus       244 l  244 (266)
                      +
T Consensus       408 V  408 (427)
T d1w1wa_         408 V  408 (427)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.75  E-value=1.9e-07  Score=76.70  Aligned_cols=58  Identities=19%  Similarity=0.104  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH----HHHHHHHhhcCCEEEEEecCHHHHH
Q 024529          178 GQKSRVAFAKITFKKPHIILLDEPSNHLDLDAV----EALIQGLVLFQGGILMVSHDEHLIS  235 (266)
Q Consensus       178 GqkqRv~lAral~~~p~lllLDEPt~~LD~~~~----~~l~~~l~~~~~tiiivtHd~~~~~  235 (266)
                      .|.+++.-..-.+.+..++|+||+..|=|+...    ..+++.|.+.+..++++||..++..
T Consensus       100 ~el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~  161 (224)
T d1ewqa2         100 VEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA  161 (224)
T ss_dssp             HHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred             HhHHHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhh
Confidence            344444433334566779999999999999753    4567777777788999999987765

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.59  E-value=7.9e-08  Score=81.83  Aligned_cols=76  Identities=24%  Similarity=0.321  Sum_probs=62.8

Q ss_pred             CCCCCChHHHHHHHHHHHH----ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHHhhcCEEEE-
Q 024529          171 PMYTLSGGQKSRVAFAKIT----FKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWV-  243 (266)
Q Consensus       171 ~~~~LSgGqkqRv~lAral----~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivtHd~~~~~~~~d~i~~-  243 (266)
                      ....+|+|||+.+.++..+    ..++.++++|||-++|+|.....+.+.|++.  +.-||++||.+.+++ .+|+++. 
T Consensus       216 ~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~-~~d~~~~v  294 (308)
T d1e69a_         216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVME-AADLLHGV  294 (308)
T ss_dssp             BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGG-GCSEEEEE
T ss_pred             hhhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHH-hcccEEEE
Confidence            3568999999998776653    4578999999999999999999999988764  346999999999987 5899865 


Q ss_pred             -EeCC
Q 024529          244 -VSEG  247 (266)
Q Consensus       244 -l~~G  247 (266)
                       +.+|
T Consensus       295 ~~~~g  299 (308)
T d1e69a_         295 TMVNG  299 (308)
T ss_dssp             EESSS
T ss_pred             EEeCC
Confidence             4556

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.46  E-value=1.1e-06  Score=72.58  Aligned_cols=47  Identities=17%  Similarity=0.074  Sum_probs=33.1

Q ss_pred             HccCCCEEEEeCCCCCCCHHHHH----HHHHHHhhc-CCEEEEEecCHHHHH
Q 024529          189 TFKKPHIILLDEPSNHLDLDAVE----ALIQGLVLF-QGGILMVSHDEHLIS  235 (266)
Q Consensus       189 l~~~p~lllLDEPt~~LD~~~~~----~l~~~l~~~-~~tiiivtHd~~~~~  235 (266)
                      .+.+..++|+||+..|=++....    .+++.+... ...+|++||..+...
T Consensus       117 ~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~~  168 (234)
T d1wb9a2         117 NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQ  168 (234)
T ss_dssp             HCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG
T ss_pred             hcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHHhh
Confidence            35566799999999999986544    345555443 346899999876543

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=98.02  E-value=9.8e-08  Score=75.21  Aligned_cols=33  Identities=30%  Similarity=0.351  Sum_probs=28.7

Q ss_pred             ceeeceEEEeCCcEEEEECCCCchHHHHHHHHhC
Q 024529           71 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        71 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      .+++.+|++.+| +++|+|||||||||+|.+|.-
T Consensus        14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~   46 (222)
T d1qhla_          14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVT   46 (222)
T ss_dssp             TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHH
T ss_pred             CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence            367888888776 999999999999999999963

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.85  E-value=3.6e-06  Score=64.49  Aligned_cols=23  Identities=35%  Similarity=0.482  Sum_probs=20.7

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      +++|+|++|||||||++.|+..+
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l   26 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPAL   26 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHH
Confidence            68999999999999999998643

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.82  E-value=4.4e-06  Score=65.63  Aligned_cols=27  Identities=22%  Similarity=0.565  Sum_probs=24.0

Q ss_pred             CcEEEEECCCCchHHHHHHHHhCCCCC
Q 024529           82 DSRIAMVGPNGIGKSTILKLIAGELQP  108 (266)
Q Consensus        82 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p  108 (266)
                      |.+++|+||+|||||||++.|....+.
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~~   28 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIPN   28 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCCC
Confidence            889999999999999999999876543

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.78  E-value=7.1e-06  Score=66.99  Aligned_cols=34  Identities=29%  Similarity=0.373  Sum_probs=26.8

Q ss_pred             CCcEEEEECCCCchHHHHHHHHhCCCCCCceEEE
Q 024529           81 LDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF  114 (266)
Q Consensus        81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~  114 (266)
                      +|..++++|+||+|||||+|.|.|-.....|+|.
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs  127 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS  127 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcchhhhhccCcc
Confidence            5899999999999999999999998777778775

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.76  E-value=8.4e-06  Score=68.78  Aligned_cols=27  Identities=44%  Similarity=0.636  Sum_probs=22.2

Q ss_pred             EEEeCCcEEEEECCCCchHHHHHHHHhC
Q 024529           77 FGIDLDSRIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        77 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      +.+.++ +.+|+|||||||||+|.+|.-
T Consensus        20 i~f~~~-lnvlvG~NgsGKS~iL~Ai~~   46 (308)
T d1e69a_          20 IGFSDR-VTAIVGPNGSGKSNIIDAIKW   46 (308)
T ss_dssp             EECCSS-EEEEECCTTTCSTHHHHHHHH
T ss_pred             EeCCCC-eEEEECCCCCcHHHHHHHHHH
Confidence            445443 999999999999999999844

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=97.72  E-value=0.00018  Score=59.30  Aligned_cols=24  Identities=33%  Similarity=0.394  Sum_probs=21.0

Q ss_pred             eCCcEEEEECCCCchHHHHHHHHh
Q 024529           80 DLDSRIAMVGPNGIGKSTILKLIA  103 (266)
Q Consensus        80 ~~Ge~~~l~G~nGsGKSTLl~~l~  103 (266)
                      -+|+++.|.|+.|+|||||+--|+
T Consensus        27 ~pg~~~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          27 VAGTVGALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             cCCcEEEEEeCCCCCHHHHHHHHH
Confidence            369999999999999999986654

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.72  E-value=8.2e-06  Score=62.72  Aligned_cols=26  Identities=31%  Similarity=0.319  Sum_probs=23.8

Q ss_pred             CCcEEEEECCCCchHHHHHHHHhCCC
Q 024529           81 LDSRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .|.++.|.||+||||||+.+.|+..+
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~l   28 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLP   28 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            58899999999999999999998764

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=2.6e-06  Score=65.76  Aligned_cols=30  Identities=30%  Similarity=0.572  Sum_probs=25.1

Q ss_pred             EEEEECCCCchHHHHHHHHhCCCCCCceEE
Q 024529           84 RIAMVGPNGIGKSTILKLIAGELQPSSGTV  113 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i  113 (266)
                      .+.|+||+|+|||||++.++..+....+.+
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v   32 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPV   32 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHHHTTCCC
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHHCCCEE
Confidence            588999999999999999998876554443

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.63  E-value=1.1e-05  Score=61.77  Aligned_cols=27  Identities=26%  Similarity=0.373  Sum_probs=23.8

Q ss_pred             eCCcEEEEECCCCchHHHHHHHHhCCC
Q 024529           80 DLDSRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      +.+.++.|+||+||||||+.+.|+..+
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l   30 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQL   30 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            357899999999999999999998754

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.61  E-value=1.3e-05  Score=61.47  Aligned_cols=26  Identities=19%  Similarity=0.185  Sum_probs=23.2

Q ss_pred             eCCcEEEEECCCCchHHHHHHHHhCC
Q 024529           80 DLDSRIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .+|-++.|+|++||||||+.+.|+-.
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~   29 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVT   29 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            36889999999999999999999854

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.60  E-value=1.4e-05  Score=69.88  Aligned_cols=28  Identities=32%  Similarity=0.656  Sum_probs=23.3

Q ss_pred             eEEEeCCcEEEEECCCCchHHHHHHHHh
Q 024529           76 NFGIDLDSRIAMVGPNGIGKSTILKLIA  103 (266)
Q Consensus        76 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~  103 (266)
                      ++++..+.+.+|+|||||||||+|.+|.
T Consensus        19 ~i~f~~~~l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          19 KVGFGESNFTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred             EEeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence            3445556699999999999999999984

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.60  E-value=1.5e-05  Score=61.39  Aligned_cols=24  Identities=25%  Similarity=0.491  Sum_probs=21.5

Q ss_pred             cEEEEECCCCchHHHHHHHHhCCC
Q 024529           83 SRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        83 e~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      ..++|+||.|||||||.+.|+..+
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999998754

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.60  E-value=7.4e-06  Score=67.10  Aligned_cols=34  Identities=29%  Similarity=0.499  Sum_probs=22.9

Q ss_pred             CCcEEEEECCCCchHHHHHHHHhCCCCCCceEEE
Q 024529           81 LDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF  114 (266)
Q Consensus        81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~  114 (266)
                      +|..++++|+||+|||||+|.|.|-..-..|+|.
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs  129 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS  129 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred             ccceEEEECCCCccHHHHHHhhccHhHhhhcccc
Confidence            5889999999999999999999998777778885

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.58  E-value=1.7e-05  Score=61.04  Aligned_cols=26  Identities=19%  Similarity=0.216  Sum_probs=22.0

Q ss_pred             cEEEEECCCCchHHHHHHHHhCCCCC
Q 024529           83 SRIAMVGPNGIGKSTILKLIAGELQP  108 (266)
Q Consensus        83 e~~~l~G~nGsGKSTLl~~l~Gl~~p  108 (266)
                      .+++|+|++|||||||++-|...+..
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~~   27 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAVR   27 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            37899999999999999988776554

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.56  E-value=1.9e-05  Score=60.48  Aligned_cols=27  Identities=33%  Similarity=0.562  Sum_probs=23.7

Q ss_pred             eCCcEEEEECCCCchHHHHHHHHhCCC
Q 024529           80 DLDSRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      ++|-.++|+||+||||||+.+.|+--+
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l   29 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAEL   29 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence            467789999999999999999998654

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.54  E-value=2.2e-05  Score=63.11  Aligned_cols=26  Identities=19%  Similarity=0.385  Sum_probs=23.0

Q ss_pred             CCcEEEEECCCCchHHHHHHHHhCCC
Q 024529           81 LDSRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      +|.++.|+||+|||||||++.|.-..
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence            48899999999999999999887543

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.50  E-value=2.8e-05  Score=59.47  Aligned_cols=26  Identities=27%  Similarity=0.388  Sum_probs=23.2

Q ss_pred             CcEEEEECCCCchHHHHHHHHhCCCC
Q 024529           82 DSRIAMVGPNGIGKSTILKLIAGELQ  107 (266)
Q Consensus        82 Ge~~~l~G~nGsGKSTLl~~l~Gl~~  107 (266)
                      ..++.|.|++||||||+.+.|+..+.
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999998763

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.49  E-value=0.00021  Score=56.92  Aligned_cols=24  Identities=17%  Similarity=0.324  Sum_probs=21.7

Q ss_pred             EeCCcEEEEECCCCchHHHHHHHH
Q 024529           79 IDLDSRIAMVGPNGIGKSTILKLI  102 (266)
Q Consensus        79 i~~Ge~~~l~G~nGsGKSTLl~~l  102 (266)
                      +++|+++.|.|++|+|||||.--+
T Consensus        23 i~~G~~~~I~G~~G~GKT~la~~~   46 (242)
T d1tf7a1          23 LPIGRSTLVSGTSGTGKTLFSIQF   46 (242)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHH
Confidence            789999999999999999997543

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.47  E-value=2.4e-05  Score=61.11  Aligned_cols=23  Identities=22%  Similarity=0.359  Sum_probs=20.5

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      ++||.||+|||||||.+.|.-.+
T Consensus        24 iIgI~G~~GSGKSTla~~L~~~l   46 (198)
T d1rz3a_          24 VLGIDGLSRSGKTTLANQLSQTL   46 (198)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999997543

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.46  E-value=2.8e-05  Score=58.38  Aligned_cols=21  Identities=33%  Similarity=0.351  Sum_probs=18.8

Q ss_pred             cEEEEECCCCchHHHHHHHHh
Q 024529           83 SRIAMVGPNGIGKSTILKLIA  103 (266)
Q Consensus        83 e~~~l~G~nGsGKSTLl~~l~  103 (266)
                      .++.|.|++|||||||.+.|.
T Consensus         3 klIii~G~pGsGKTTla~~L~   23 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFI   23 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            478899999999999999775

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.45  E-value=2.8e-05  Score=58.46  Aligned_cols=23  Identities=52%  Similarity=0.741  Sum_probs=20.2

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .+.|+||+||||||+.+.|+-.+
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L   26 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQL   26 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            47889999999999999998654

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.44  E-value=3.4e-05  Score=59.44  Aligned_cols=27  Identities=22%  Similarity=0.438  Sum_probs=22.7

Q ss_pred             CcEEEEECCCCchHHHHHHHHhCCCCC
Q 024529           82 DSRIAMVGPNGIGKSTILKLIAGELQP  108 (266)
Q Consensus        82 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p  108 (266)
                      +.+++|.|+.||||||+.+.|+-.+..
T Consensus         1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~   27 (190)
T d1khta_           1 NKVVVVTGVPGVGSTTSSQLAMDNLRK   27 (190)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            368999999999999999999765433

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.40  E-value=0.00039  Score=56.03  Aligned_cols=26  Identities=27%  Similarity=0.350  Sum_probs=23.3

Q ss_pred             EeCCcEEEEECCCCchHHHHHHHHhC
Q 024529           79 IDLDSRIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        79 i~~Ge~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      +++|.++.|.||+|||||||+.-++-
T Consensus        23 i~~gsl~li~G~pGsGKT~l~~qia~   48 (242)
T d1tf7a2          23 FFKDSIILATGATGTGKTLLVSRFVE   48 (242)
T ss_dssp             EESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            78999999999999999999876654

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.39  E-value=3.8e-05  Score=58.34  Aligned_cols=24  Identities=42%  Similarity=0.657  Sum_probs=21.4

Q ss_pred             cEEEEECCCCchHHHHHHHHhCCC
Q 024529           83 SRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        83 e~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .++.|.||+||||||+.+.|+..+
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~   26 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQL   26 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHc
Confidence            368999999999999999998754

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.39  E-value=3.3e-05  Score=58.88  Aligned_cols=22  Identities=36%  Similarity=0.619  Sum_probs=19.2

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+||.||||||+.+.|+--
T Consensus         6 ~I~i~G~pGsGKTTia~~La~~   27 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELASK   27 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3779999999999999999753

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=3.1e-05  Score=60.45  Aligned_cols=25  Identities=20%  Similarity=0.303  Sum_probs=22.4

Q ss_pred             CCcEEEEECCCCchHHHHHHHHhCC
Q 024529           81 LDSRIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      +|-++.|+|++||||||+.+.|+-.
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~   42 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEY   42 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            5779999999999999999999754

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.30  E-value=5.2e-05  Score=59.55  Aligned_cols=22  Identities=50%  Similarity=0.813  Sum_probs=19.4

Q ss_pred             EEEECCCCchHHHHHHHHhCCC
Q 024529           85 IAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        85 ~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      ++|+||+|||||||++.|+...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            7899999999999999987543

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.30  E-value=4.9e-05  Score=59.80  Aligned_cols=23  Identities=26%  Similarity=0.530  Sum_probs=20.8

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .++|+|+.|+|||||++.|.|.-
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~~   47 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINRK   47 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred             EEEEECCCCCCHHHHHHHhcCCC
Confidence            49999999999999999999853

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=6.3e-05  Score=60.03  Aligned_cols=23  Identities=30%  Similarity=0.349  Sum_probs=20.4

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      ++||.|++|||||||.+.|+-.+
T Consensus         4 iIgI~G~~gSGKSTla~~L~~~l   26 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKIVQLL   26 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999887654

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.24  E-value=6.8e-05  Score=60.55  Aligned_cols=21  Identities=29%  Similarity=0.460  Sum_probs=19.4

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q 024529           84 RIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      +++|+|+.|||||||++.|..
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~   22 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGR   22 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            689999999999999999974

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.22  E-value=7.1e-05  Score=59.05  Aligned_cols=21  Identities=48%  Similarity=0.816  Sum_probs=18.7

Q ss_pred             EEEECCCCchHHHHHHHHhCC
Q 024529           85 IAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        85 ~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      ++|+||+|||||||++.|+-.
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            679999999999999998654

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.19  E-value=7.8e-05  Score=55.84  Aligned_cols=22  Identities=23%  Similarity=0.656  Sum_probs=20.4

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      +++|+|++|+|||||++.+.+-
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6789999999999999999985

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.19  E-value=6.3e-05  Score=57.77  Aligned_cols=24  Identities=21%  Similarity=0.591  Sum_probs=21.1

Q ss_pred             cEEEEECCCCchHHHHHHHHhCCC
Q 024529           83 SRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        83 e~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      -.++|+|++|||||||++.+.+-.
T Consensus        14 ~kI~lvG~~~vGKTsLl~~l~~~~   37 (186)
T d1f6ba_          14 GKLVFLGLDNAGKTTLLHMLKDDR   37 (186)
T ss_dssp             EEEEEEEETTSSHHHHHHHHSCC-
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            368999999999999999998864

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.18  E-value=9.6e-05  Score=56.74  Aligned_cols=23  Identities=26%  Similarity=0.505  Sum_probs=20.1

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .|+|+|+.|+|||||++.|+|..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~   24 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999999853

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.0001  Score=57.56  Aligned_cols=23  Identities=17%  Similarity=0.544  Sum_probs=20.4

Q ss_pred             cEEEEECCCCchHHHHHHHHhCC
Q 024529           83 SRIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        83 e~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      ..+.|+||+|+|||||++.|...
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHh
Confidence            57899999999999999988753

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=97.14  E-value=9.4e-05  Score=55.46  Aligned_cols=22  Identities=45%  Similarity=0.549  Sum_probs=19.8

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|+.|||||||++.+.+-
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999764

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.14  E-value=8.5e-05  Score=57.46  Aligned_cols=22  Identities=32%  Similarity=0.634  Sum_probs=20.5

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      -++|+|+.|+|||||++.|.|-
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4799999999999999999985

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.14  E-value=6.2e-05  Score=58.59  Aligned_cols=21  Identities=33%  Similarity=0.683  Sum_probs=19.7

Q ss_pred             EEEECCCCchHHHHHHHHhCC
Q 024529           85 IAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        85 ~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      |||+|+.++|||||++.|+|-
T Consensus         4 VaiiG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEEE
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            899999999999999999874

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.12  E-value=0.00012  Score=56.36  Aligned_cols=22  Identities=45%  Similarity=0.717  Sum_probs=20.4

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      +|+|+|..|+|||||++.|.|-
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999984

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=97.12  E-value=0.0001  Score=55.67  Aligned_cols=23  Identities=39%  Similarity=0.541  Sum_probs=20.5

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .++|+|+.|||||||++.+.+-.
T Consensus         7 kI~ivG~~~vGKSSLi~~~~~~~   29 (169)
T d1upta_           7 RILILGLDGAGKTTILYRLQVGE   29 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            48999999999999999998753

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.00015  Score=56.54  Aligned_cols=26  Identities=31%  Similarity=0.328  Sum_probs=23.8

Q ss_pred             EeCCcEEEEECCCCchHHHHHHHHhC
Q 024529           79 IDLDSRIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        79 i~~Ge~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      +++|+++.|.||+|||||||+-.++.
T Consensus        20 i~~G~v~~i~G~~GsGKT~l~l~la~   45 (242)
T d1n0wa_          20 IETGSITEMFGEFRTGKTQICHTLAV   45 (242)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence            78999999999999999999887764

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.11  E-value=0.00012  Score=56.72  Aligned_cols=22  Identities=36%  Similarity=0.693  Sum_probs=20.4

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .+||+|..|+|||||++.|+|-
T Consensus        10 kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2          10 KVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            5899999999999999999985

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.10  E-value=0.00012  Score=56.52  Aligned_cols=22  Identities=41%  Similarity=0.640  Sum_probs=21.0

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      +|+|+|..|+|||||++.|+|.
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7999999999999999999985

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=97.07  E-value=0.00013  Score=55.18  Aligned_cols=25  Identities=28%  Similarity=0.546  Sum_probs=21.9

Q ss_pred             CcEEEEECCCCchHHHHHHHHhCCC
Q 024529           82 DSRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        82 Ge~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      |=.++|+|+.|+|||||++.|+|.-
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~~~   25 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAGRE   25 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3468999999999999999999863

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.07  E-value=0.00013  Score=57.26  Aligned_cols=24  Identities=25%  Similarity=0.321  Sum_probs=21.2

Q ss_pred             CcEEEEECCCCchHHHHHHHHhCC
Q 024529           82 DSRIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        82 Ge~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      ..+++|+||.||||||+.+.|+--
T Consensus         6 p~iI~i~G~pGSGKsT~a~~La~~   29 (194)
T d1qf9a_           6 PNVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999999853

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.06  E-value=0.00013  Score=55.76  Aligned_cols=22  Identities=41%  Similarity=0.646  Sum_probs=19.6

Q ss_pred             EEEECCCCchHHHHHHHHhCCC
Q 024529           85 IAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        85 ~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      +.|+|+.||||||+.+.|+..+
T Consensus         3 I~liG~~GsGKsTi~k~La~~l   24 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDL   24 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6789999999999999998654

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.05  E-value=0.0001  Score=57.03  Aligned_cols=22  Identities=27%  Similarity=0.469  Sum_probs=20.4

Q ss_pred             EEEECCCCchHHHHHHHHhCCC
Q 024529           85 IAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        85 ~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      |||+|..|+|||||++.|+|..
T Consensus         4 VaivG~~nvGKSTLin~L~~~~   25 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRAH   25 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSSC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            8999999999999999999853

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.05  E-value=0.00017  Score=56.36  Aligned_cols=25  Identities=32%  Similarity=0.468  Sum_probs=22.4

Q ss_pred             eCCcEEEEECCCCchHHHHHHHHhC
Q 024529           80 DLDSRIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        80 ~~Ge~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      ++|-.+.|+||.||||||+.+.|+-
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHH
Confidence            4677899999999999999999983

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.05  E-value=0.00011  Score=62.93  Aligned_cols=32  Identities=25%  Similarity=0.410  Sum_probs=27.2

Q ss_pred             EeCCcEEEEECCCCchHHHHHHHHhCCCCCCc
Q 024529           79 IDLDSRIAMVGPNGIGKSTILKLIAGELQPSS  110 (266)
Q Consensus        79 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~  110 (266)
                      +..+.-+.|.|+.||||||||+.|++.++|..
T Consensus       163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~~  194 (323)
T d1g6oa_         163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEE  194 (323)
T ss_dssp             HHHTCCEEEEESTTSSHHHHHHHHGGGSCTTC
T ss_pred             HHhCCCEEEEeeccccchHHHHHHhhhccccc
Confidence            34455689999999999999999999988764

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.05  E-value=0.00013  Score=56.29  Aligned_cols=23  Identities=35%  Similarity=0.421  Sum_probs=20.6

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      ++.|.|++||||||+.+.|+..+
T Consensus         3 iivi~G~~GsGKTT~~~~La~~L   25 (194)
T d1nksa_           3 IGIVTGIPGVGKSTVLAKVKEIL   25 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            67889999999999999998765

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.02  E-value=0.00014  Score=57.35  Aligned_cols=22  Identities=32%  Similarity=0.724  Sum_probs=20.6

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|+.|||||||++.|.|-
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999875

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=97.02  E-value=0.00022  Score=54.21  Aligned_cols=23  Identities=48%  Similarity=0.700  Sum_probs=20.9

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .++|+|+.|||||||++.|.+-.
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~~~   26 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNGED   26 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            48899999999999999999854

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.98  E-value=0.00018  Score=56.49  Aligned_cols=25  Identities=28%  Similarity=0.337  Sum_probs=22.0

Q ss_pred             CcEEEEECCCCchHHHHHHHHhCCC
Q 024529           82 DSRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        82 Ge~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      -.++.|+||.||||||+.+.|+.-+
T Consensus         8 ~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           8 VSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            3479999999999999999998754

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.98  E-value=0.00017  Score=55.50  Aligned_cols=22  Identities=36%  Similarity=0.504  Sum_probs=19.1

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .+.|+|++||||||+.+.|+-.
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~   25 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARA   25 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4678999999999999999743

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=96.96  E-value=0.0011  Score=58.26  Aligned_cols=106  Identities=21%  Similarity=0.285  Sum_probs=61.5

Q ss_pred             eCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHH
Q 024529           80 DLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLG  159 (266)
Q Consensus        80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  159 (266)
                      .++-++.|.||.||||||+|..+...+......|.        . -.+|.... ..            +..         
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~--------t-iEdPiE~~-~~------------~~~---------  204 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNIL--------T-VEDPIEFD-ID------------GIG---------  204 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEE--------E-EESSCCSC-CS------------SSE---------
T ss_pred             hhhceEEEEcCCCCCccHHHHHHhhhhcCCCceEE--------E-eccCcccc-cC------------CCC---------
Confidence            35668999999999999999999875432222321        1 11222111 00            100         


Q ss_pred             hcCCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecC
Q 024529          160 SFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHD  230 (266)
Q Consensus       160 ~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd  230 (266)
                      ++.+...    .  ..|    ---+|..+|-++|+++++.|..   |+++....++.- ..|.-|+-+-|-
T Consensus       205 q~~v~~~----~--~~~----~~~~l~~~lR~dPDvi~igEiR---d~~ta~~a~~aa-~tGhlV~tTlHa  261 (401)
T d1p9ra_         205 QTQVNPR----V--DMT----FARGLRAILRQDPDVVMVGEIR---DLETAQIAVQAS-LTGHLVMSTLHT  261 (401)
T ss_dssp             EEECBGG----G--TBC----HHHHHHHHGGGCCSEEEESCCC---SHHHHHHHHHHH-HTTCEEEEEECC
T ss_pred             eeeecCC----c--CCC----HHHHHHHHHhhcCCEEEecCcC---ChHHHHHHHHHH-hcCCeEEEEecc
Confidence            0001100    0  011    2335777888999999999998   788877666543 335566666664

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.95  E-value=0.00015  Score=56.62  Aligned_cols=22  Identities=27%  Similarity=0.448  Sum_probs=19.5

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      ++.|+||.||||||+.+.|+--
T Consensus         5 ~I~i~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           5 KVMISGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999999743

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.94  E-value=0.0002  Score=54.80  Aligned_cols=22  Identities=45%  Similarity=0.552  Sum_probs=19.1

Q ss_pred             EEEECCCCchHHHHHHHHhCCC
Q 024529           85 IAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        85 ~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      +.|+|+.||||||+-+.|+-.+
T Consensus         4 IvliG~~G~GKSTig~~La~~l   25 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKAL   25 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6688999999999999998543

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.93  E-value=0.00018  Score=56.19  Aligned_cols=21  Identities=38%  Similarity=0.555  Sum_probs=19.3

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q 024529           84 RIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      ++||+|+.||||||+.+.|.-
T Consensus         5 IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           5 IIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            789999999999999999863

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.93  E-value=0.00024  Score=55.10  Aligned_cols=25  Identities=28%  Similarity=0.238  Sum_probs=21.7

Q ss_pred             eCCcEEEEECCCCchHHHHHHHHhC
Q 024529           80 DLDSRIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        80 ~~Ge~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      +.-+++.++|+.||||||+.+-++-
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4567999999999999999998853

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.91  E-value=0.00023  Score=54.86  Aligned_cols=23  Identities=26%  Similarity=0.437  Sum_probs=19.7

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .+.|+||.||||||+.+.|+--+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999996543

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.91  E-value=0.00015  Score=56.78  Aligned_cols=24  Identities=25%  Similarity=0.256  Sum_probs=21.7

Q ss_pred             cEEEEECCCCchHHHHHHHHhCCC
Q 024529           83 SRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        83 e~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      =+++|-|+.||||||+++.|+..+
T Consensus        10 ~~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1          10 FTVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            479999999999999999998755

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.90  E-value=0.00016  Score=56.78  Aligned_cols=27  Identities=30%  Similarity=0.309  Sum_probs=23.5

Q ss_pred             eCCcEEEEECCCCchHHHHHHHHhCCC
Q 024529           80 DLDSRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      ..+.++.|+||.||||||+.+.|+--+
T Consensus         6 ~~~~iI~l~G~pGSGKsT~a~~La~~~   32 (194)
T d3adka_           6 KKSKIIFVVGGPGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             HTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            467889999999999999999998643

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.00025  Score=55.43  Aligned_cols=22  Identities=27%  Similarity=0.354  Sum_probs=19.9

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      ++.|+||.||||||..+.|+--
T Consensus         3 iI~i~GppGSGKsT~a~~La~~   24 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVEK   24 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999753

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=96.86  E-value=0.00012  Score=56.23  Aligned_cols=23  Identities=26%  Similarity=0.485  Sum_probs=20.6

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .++|+|+.++|||||++.|.|..
T Consensus        18 ~I~lvG~~NvGKSSL~n~L~~~~   40 (188)
T d1puia_          18 EVAFAGRSNAGKSSALNTLTNQK   40 (188)
T ss_dssp             EEEEEECTTSSHHHHHTTTCCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            49999999999999999998863

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.86  E-value=0.00027  Score=55.53  Aligned_cols=22  Identities=36%  Similarity=0.353  Sum_probs=20.0

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      ++.++|..|||||||.+.|+..
T Consensus         4 li~l~GlpgsGKSTla~~L~~~   25 (213)
T d1bifa1           4 LIVMVGLPARGKTYISKKLTRY   25 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999853

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=96.84  E-value=0.00026  Score=54.08  Aligned_cols=22  Identities=32%  Similarity=0.525  Sum_probs=20.5

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|..|||||||++.|.+-
T Consensus        17 kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          17 KVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6889999999999999999985

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.82  E-value=0.00021  Score=58.41  Aligned_cols=25  Identities=28%  Similarity=0.384  Sum_probs=22.1

Q ss_pred             cEEEEECCCCchHHHHHHHHhCCCC
Q 024529           83 SRIAMVGPNGIGKSTILKLIAGELQ  107 (266)
Q Consensus        83 e~~~l~G~nGsGKSTLl~~l~Gl~~  107 (266)
                      ..+.|.||.|||||||.+.|++.+.
T Consensus        33 ~~ilL~GpPGtGKT~la~~la~~~~   57 (273)
T d1gvnb_          33 TAFLLGGQPGSGKTSLRSAIFEETQ   57 (273)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhh
Confidence            4588999999999999999998654

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.81  E-value=0.00031  Score=55.81  Aligned_cols=26  Identities=27%  Similarity=0.411  Sum_probs=23.0

Q ss_pred             CCcEEEEECCCCchHHHHHHHHhCCC
Q 024529           81 LDSRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      +|.+++|-|+.||||||+++.|...+
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L   26 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETL   26 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            58899999999999999999998543

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.79  E-value=0.00032  Score=54.32  Aligned_cols=23  Identities=30%  Similarity=0.442  Sum_probs=20.2

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      ++.|+||.||||||+.+.|+--+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999998643

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.00032  Score=56.04  Aligned_cols=27  Identities=26%  Similarity=0.297  Sum_probs=23.5

Q ss_pred             eCCcEEEEECCCCchHHHHHHHHhCCC
Q 024529           80 DLDSRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      ++|-+++|-|+.||||||+.+.|..-+
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L   27 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEAL   27 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence            468899999999999999999987643

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.77  E-value=0.00033  Score=55.77  Aligned_cols=30  Identities=40%  Similarity=0.548  Sum_probs=23.0

Q ss_pred             EEEEECCCCchHHHHHHHHhC---CCCCCceEE
Q 024529           84 RIAMVGPNGIGKSTILKLIAG---ELQPSSGTV  113 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~G---l~~p~~G~i  113 (266)
                      +++|-||.||||||+.+.|+-   +...++|.+
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~lg~~~istGdl   37 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAM   37 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEECHHHH
Confidence            578889999999999999975   333444544

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.76  E-value=0.00035  Score=55.85  Aligned_cols=25  Identities=24%  Similarity=0.223  Sum_probs=22.6

Q ss_pred             eCCcEEEEECCCCchHHHHHHHHhC
Q 024529           80 DLDSRIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        80 ~~Ge~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      ++|-++.|+|.+|||||||.+.|.-
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            5788999999999999999999873

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.74  E-value=0.00011  Score=55.50  Aligned_cols=22  Identities=41%  Similarity=0.717  Sum_probs=20.4

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|+.|+|||||++.|+|-
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999885

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.74  E-value=0.00036  Score=55.21  Aligned_cols=31  Identities=35%  Similarity=0.551  Sum_probs=24.7

Q ss_pred             EEEEECCCCchHHHHHHHHhC---CCCCCceEEE
Q 024529           84 RIAMVGPNGIGKSTILKLIAG---ELQPSSGTVF  114 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~G---l~~p~~G~i~  114 (266)
                      +++|.||.||||||+-+.|+-   +...+.|.++
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~gl~~iStGdLl   38 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIY   38 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEECHHHHH
Confidence            899999999999999999974   4444556554

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.73  E-value=0.00035  Score=55.46  Aligned_cols=21  Identities=33%  Similarity=0.542  Sum_probs=19.2

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q 024529           84 RIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      ++||+|+.||||||+.+++.-
T Consensus         4 iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999863

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.73  E-value=0.026  Score=46.33  Aligned_cols=23  Identities=26%  Similarity=0.258  Sum_probs=20.2

Q ss_pred             CcEEEEECCCCchHHHHHHHHhC
Q 024529           82 DSRIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        82 Ge~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      ..+++|.|.-|.|||||.+.+.-
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~   66 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALS   66 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999998853

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=96.73  E-value=0.00034  Score=53.15  Aligned_cols=22  Identities=32%  Similarity=0.522  Sum_probs=19.2

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++++|+.|+|||||++.+.+-
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999988653

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.71  E-value=0.00036  Score=56.06  Aligned_cols=23  Identities=39%  Similarity=0.684  Sum_probs=20.2

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .+.|.||+|+|||||.++|+..+
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~l   69 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALAREL   69 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHH
Confidence            37899999999999999998744

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=96.71  E-value=0.0048  Score=50.97  Aligned_cols=94  Identities=18%  Similarity=0.306  Sum_probs=55.2

Q ss_pred             EEeCCcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHH
Q 024529           78 GIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAH  157 (266)
Q Consensus        78 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (266)
                      =++.|.++-|.||+|||||||.-.++....-..|.+        .|+.-+.    .               .+.    +.
T Consensus        53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v--------~yiDtE~----~---------------~~~----~~  101 (268)
T d1xp8a1          53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTC--------AFIDAEH----A---------------LDP----VY  101 (268)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCE--------EEEESSC----C---------------CCH----HH
T ss_pred             CccCceEEEEecCCccchHHHHHHHHHHHHhCCCEE--------EEEECCc----c---------------CCH----HH
Confidence            367899999999999999999888876543222322        2332221    0               111    13


Q ss_pred             HHhcCCCcccccCCCCCCChHHHHHHHHHHHHcc--CCCEEEEeCCCCCC
Q 024529          158 LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK--KPHIILLDEPSNHL  205 (266)
Q Consensus       158 l~~~~l~~~~~~~~~~~LSgGqkqRv~lAral~~--~p~lllLDEPt~~L  205 (266)
                      ++.+|++.+  +-.+..-.-+|.+ +.++..|+.  +++++++|=-++-.
T Consensus       102 a~~~Gvd~d--~i~~~~~~~~E~~-~~~~~~l~~~~~~~liIiDSi~al~  148 (268)
T d1xp8a1         102 ARALGVNTD--ELLVSQPDNGEQA-LEIMELLVRSGAIDVVVVDSVAALT  148 (268)
T ss_dssp             HHHTTCCGG--GCEEECCSSHHHH-HHHHHHHHTTTCCSEEEEECTTTCC
T ss_pred             HHHhCCCch--hEEEEcCCCHHHH-HHHHHHHHhcCCCcEEEEecccccc
Confidence            444555422  1111222335554 456666653  58999999988755

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=0.00023  Score=57.24  Aligned_cols=27  Identities=22%  Similarity=0.308  Sum_probs=23.7

Q ss_pred             CCcEEEEECCCCchHHHHHHHHhCCCC
Q 024529           81 LDSRIAMVGPNGIGKSTILKLIAGELQ  107 (266)
Q Consensus        81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~  107 (266)
                      ++.+++|-|+-||||||+++.|+..+.
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            357899999999999999999998653

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.71  E-value=0.00036  Score=53.78  Aligned_cols=22  Identities=32%  Similarity=0.474  Sum_probs=19.4

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .+.|+||.||||||..+.|+--
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~   23 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEK   23 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999753

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=96.69  E-value=0.00047  Score=55.16  Aligned_cols=26  Identities=27%  Similarity=0.438  Sum_probs=21.2

Q ss_pred             CCcEEEEECCCCchHHHHHHHHhCCC
Q 024529           81 LDSRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      ++.+++++||+|+||||.+-=|+-.+
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~   30 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYY   30 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            56799999999999999876666544

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.68  E-value=0.00038  Score=57.46  Aligned_cols=23  Identities=39%  Similarity=0.674  Sum_probs=21.0

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .++|+|..|+|||||+|.|.|-.
T Consensus        34 ~I~LvG~tg~GKSSliN~ilg~~   56 (257)
T d1h65a_          34 TILVMGKGGVGKSSTVNSIIGER   56 (257)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            48999999999999999999964

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.68  E-value=0.00034  Score=55.25  Aligned_cols=22  Identities=18%  Similarity=0.270  Sum_probs=20.0

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .|+|+|+.|||||||++.+.+-
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999874

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.67  E-value=0.00046  Score=53.29  Aligned_cols=22  Identities=36%  Similarity=0.632  Sum_probs=19.4

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .+.|+||.||||||+.+.|+--
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999743

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.66  E-value=0.00046  Score=55.28  Aligned_cols=28  Identities=29%  Similarity=0.395  Sum_probs=24.9

Q ss_pred             CCcEEEEECCCCchHHHHHHHHhCCCCC
Q 024529           81 LDSRIAMVGPNGIGKSTILKLIAGELQP  108 (266)
Q Consensus        81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p  108 (266)
                      +|.+++|-|+.||||||+.+.|+-.+..
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~~   29 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQP   29 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence            6899999999999999999999866543

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.00089  Score=50.96  Aligned_cols=29  Identities=28%  Similarity=0.544  Sum_probs=22.6

Q ss_pred             EEEEECCCCchHHHHHHHHhCC-----CCCCceE
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE-----LQPSSGT  112 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl-----~~p~~G~  112 (266)
                      .++|+|..|+|||||++-+.+-     +.|+-|.
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~   37 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVED   37 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCE
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCccCcceee
Confidence            4789999999999999987752     3455554

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.61  E-value=0.00056  Score=54.60  Aligned_cols=26  Identities=23%  Similarity=0.291  Sum_probs=23.6

Q ss_pred             EeCCcEEEEECCCCchHHHHHHHHhC
Q 024529           79 IDLDSRIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        79 i~~Ge~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      +++|+++.|.||.|||||||.--++-
T Consensus        31 i~~G~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          31 VETGSITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             EESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred             CcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            78999999999999999999987753

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.61  E-value=0.00053  Score=53.03  Aligned_cols=22  Identities=32%  Similarity=0.614  Sum_probs=19.5

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .+.|+||.||||||+.+.|+--
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~   25 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQER   25 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4679999999999999999854

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.60  E-value=0.00058  Score=55.34  Aligned_cols=23  Identities=48%  Similarity=0.754  Sum_probs=20.6

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .+.|.||+|+||||+.++|+...
T Consensus        54 ~lll~GPpG~GKTt~a~~la~~~   76 (253)
T d1sxja2          54 AAMLYGPPGIGKTTAAHLVAQEL   76 (253)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            46799999999999999999754

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.60  E-value=0.0099  Score=47.71  Aligned_cols=41  Identities=22%  Similarity=0.250  Sum_probs=31.4

Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CEEEEEecCHHHH
Q 024529          193 PHIILLDEPSNHLDLDAVEALIQGLVLFQ--GGILMVSHDEHLI  234 (266)
Q Consensus       193 p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~tiiivtHd~~~~  234 (266)
                      .+++++||.=. |.......++..+.+..  ..+|++|++.+-+
T Consensus       116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i  158 (239)
T d1njfa_         116 FKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL  158 (239)
T ss_dssp             SEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred             CEEEEEECccc-CCHHHHHHHHHHHhcCCCCeEEEEEcCCcccc
Confidence            45999999954 78888888888887753  3588888877543

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.60  E-value=0.00063  Score=51.98  Aligned_cols=22  Identities=18%  Similarity=0.684  Sum_probs=19.4

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|+.|+|||||++.+.+-
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~~   25 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVND   25 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHcC
Confidence            3789999999999999998753

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.00058  Score=51.89  Aligned_cols=22  Identities=27%  Similarity=0.605  Sum_probs=19.5

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|+.|+|||||++.+.+-
T Consensus         5 Ki~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999988764

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.59  E-value=0.00048  Score=52.61  Aligned_cols=20  Identities=30%  Similarity=0.544  Sum_probs=18.4

Q ss_pred             EEEECCCCchHHHHHHHHhC
Q 024529           85 IAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        85 ~~l~G~nGsGKSTLl~~l~G  104 (266)
                      ++++|+.|+|||||++.+.+
T Consensus         8 i~vvG~~~vGKTsLi~~l~~   27 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYAD   27 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            88999999999999998764

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.57  E-value=0.0005  Score=55.10  Aligned_cols=21  Identities=29%  Similarity=0.615  Sum_probs=19.4

Q ss_pred             EEEECCCCchHHHHHHHHhCC
Q 024529           85 IAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        85 ~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      +.|.||+|+|||||.++++..
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHH
Confidence            789999999999999999864

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=96.57  E-value=0.0005  Score=53.20  Aligned_cols=21  Identities=24%  Similarity=0.412  Sum_probs=20.0

Q ss_pred             EEEECCCCchHHHHHHHHhCC
Q 024529           85 IAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        85 ~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      +||+|...||||||++.|.|.
T Consensus         8 IaiiG~~naGKSTL~n~L~~~   28 (179)
T d1wb1a4           8 LGIFGHIDHGKTTLSKVLTEI   28 (179)
T ss_dssp             EEEEECTTSSHHHHHHHHHTT
T ss_pred             EEEEeCCCCcHHHHHHHHHHh
Confidence            999999999999999999974

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.54  E-value=0.00061  Score=53.36  Aligned_cols=23  Identities=35%  Similarity=0.562  Sum_probs=20.4

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .++|+||.||||||+.+.|+--+
T Consensus         8 rIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           8 RAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHB
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            68899999999999999998643

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.54  E-value=0.00055  Score=52.58  Aligned_cols=22  Identities=27%  Similarity=0.712  Sum_probs=19.2

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|+.|+|||||++.+.+-
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~~   27 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTRN   27 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3899999999999999987653

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=96.54  E-value=0.00053  Score=52.45  Aligned_cols=22  Identities=45%  Similarity=0.752  Sum_probs=20.0

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++++|+.|+|||||++.+.+-
T Consensus        18 kI~vvG~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_          18 RILLLGLDNAGKTTLLKQLASE   39 (176)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4889999999999999999774

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.49  E-value=0.00058  Score=57.91  Aligned_cols=24  Identities=29%  Similarity=0.493  Sum_probs=21.5

Q ss_pred             EEEEECCCCchHHHHHHHHhCCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGELQ  107 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~~  107 (266)
                      ++||.|++|||||||.+.|..++.
T Consensus        82 iIGIaG~sgSGKSTla~~L~~lL~  105 (308)
T d1sq5a_          82 IISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             EEEEeCCCCCCCcHHHHHHHHHHh
Confidence            799999999999999999987653

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.48  E-value=0.00067  Score=55.01  Aligned_cols=24  Identities=25%  Similarity=0.300  Sum_probs=21.1

Q ss_pred             CCcEEEEECCCCchHHHHHHHHhC
Q 024529           81 LDSRIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        81 ~Ge~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      .+..+.|.||.|+|||||++.++-
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHH
Confidence            457899999999999999998864

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.48  E-value=0.00058  Score=58.41  Aligned_cols=25  Identities=36%  Similarity=0.505  Sum_probs=21.7

Q ss_pred             CcEEEEECCCCchHHHHHHHHhCCC
Q 024529           82 DSRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        82 Ge~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .-++||+||.|||||||+..|...+
T Consensus        54 ~~~IgitG~pGaGKSTLi~~l~~~~   78 (327)
T d2p67a1          54 TLRLGVTGTPGAGKSTFLEAFGMLL   78 (327)
T ss_dssp             SEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             ceEEEeeCCCCCCHHHHHHHHHHHH
Confidence            4579999999999999999997543

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=96.48  E-value=0.00049  Score=55.21  Aligned_cols=25  Identities=40%  Similarity=0.587  Sum_probs=20.0

Q ss_pred             CcEEEEECCCCchHHHHHHHHhCCC
Q 024529           82 DSRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        82 Ge~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      -.+++++||+|+||||.+-=|+-.+
T Consensus         9 p~vi~lvGptGvGKTTTiAKLA~~~   33 (211)
T d2qy9a2           9 PFVILMVGVNGVGKTTTIGKLARQF   33 (211)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHH
Confidence            3579999999999999776666544

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.48  E-value=0.00067  Score=53.88  Aligned_cols=21  Identities=38%  Similarity=0.515  Sum_probs=19.4

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q 024529           84 RIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      ++||+|..||||||..+++..
T Consensus         5 iIgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHHH
Confidence            789999999999999999864

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=96.47  E-value=0.00049  Score=55.27  Aligned_cols=26  Identities=35%  Similarity=0.350  Sum_probs=20.0

Q ss_pred             eCCcEEEEECCCCchHHHHHHHHhCC
Q 024529           80 DLDSRIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .+.-+++++||+|+||||.+-=|+-.
T Consensus         9 ~~p~vi~lvGptGvGKTTTiAKLAa~   34 (213)
T d1vmaa2           9 EPPFVIMVVGVNGTGKTTSCGKLAKM   34 (213)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            34458999999999999976666543

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.47  E-value=0.00064  Score=54.71  Aligned_cols=27  Identities=41%  Similarity=0.780  Sum_probs=22.5

Q ss_pred             EEEEECCCCchHHHHHHHHhCCCCCCc
Q 024529           84 RIAMVGPNGIGKSTILKLIAGELQPSS  110 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~  110 (266)
                      .+.+.||.|+|||||.++|+..+....
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~~~~~~   63 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASELQTNI   63 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred             eEEEECCCCCcHHHHHHHHHhccCCCc
Confidence            378999999999999999997655443

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.46  E-value=0.0009  Score=50.66  Aligned_cols=21  Identities=24%  Similarity=0.585  Sum_probs=18.3

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q 024529           84 RIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      .++|+|+.|+|||||++-+.+
T Consensus         4 Kv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           4 KMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999987664

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.43  E-value=0.00077  Score=52.94  Aligned_cols=23  Identities=35%  Similarity=0.666  Sum_probs=20.2

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      +++|-|.-||||||+++.|...+
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l   24 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAF   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            58899999999999999998643

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.00085  Score=51.86  Aligned_cols=21  Identities=29%  Similarity=0.550  Sum_probs=19.2

Q ss_pred             EEEECCCCchHHHHHHHHhCC
Q 024529           85 IAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        85 ~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      ++|+|+.|+|||||++.+.+-
T Consensus         8 i~ivG~~~vGKTsLi~~l~~~   28 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTDN   28 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            889999999999999998864

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.40  E-value=0.00092  Score=50.94  Aligned_cols=23  Identities=26%  Similarity=0.696  Sum_probs=20.2

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .++|+|+.|+|||||++.+.+..
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~~~   25 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGGVE   25 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC-
T ss_pred             EEEEECCCCcCHHHHHHHHhCCc
Confidence            47899999999999999998864

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.39  E-value=0.00037  Score=58.57  Aligned_cols=23  Identities=26%  Similarity=0.417  Sum_probs=17.8

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      ++||.|++||||||+.+.|...+
T Consensus         6 IIgIaG~SGSGKTTva~~l~~i~   28 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQIF   28 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHH
Confidence            89999999999999999887654

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.39  E-value=0.00076  Score=51.63  Aligned_cols=22  Identities=27%  Similarity=0.613  Sum_probs=19.2

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|+.|+|||||++.+.+-
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            3789999999999999987654

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.0012  Score=50.60  Aligned_cols=24  Identities=38%  Similarity=0.793  Sum_probs=20.9

Q ss_pred             EEEEECCCCchHHHHHHHHhCCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGELQ  107 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~~  107 (266)
                      .++|+|+.|+|||||++.+.+...
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~~~~   28 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAGVHD   28 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCcC
Confidence            478999999999999999987643

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.38  E-value=0.00093  Score=51.00  Aligned_cols=29  Identities=17%  Similarity=0.242  Sum_probs=25.3

Q ss_pred             EEeCCcEEEEECCCCchHHHHHHHHhCCC
Q 024529           78 GIDLDSRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        78 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      ..++|.+++|.|+=|||||||.|.++.-+
T Consensus        29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             CCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             cCCCCeEEEEecCCCccHHHHHHHHHhhc
Confidence            34689999999999999999999997544

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.38  E-value=0.00092  Score=50.66  Aligned_cols=22  Identities=32%  Similarity=0.687  Sum_probs=19.2

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++++|++|+|||||++.+.+-
T Consensus         4 Ki~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           4 KILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999987654

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=96.38  E-value=0.00094  Score=53.32  Aligned_cols=25  Identities=28%  Similarity=0.240  Sum_probs=20.5

Q ss_pred             CcEEEEECCCCchHHHHHHHHhCCC
Q 024529           82 DSRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        82 Ge~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      ..++.++||+|+||||.+--|+-.+
T Consensus        10 ~~vi~lvGp~GvGKTTTiaKLA~~~   34 (207)
T d1ls1a2          10 RNLWFLVGLQGSGKTTTAAKLALYY   34 (207)
T ss_dssp             SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            4578999999999999877777544

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.37  E-value=0.00093  Score=50.69  Aligned_cols=21  Identities=29%  Similarity=0.513  Sum_probs=19.1

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q 024529           84 RIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      .++|+|+.|+|||||++.+.+
T Consensus         6 Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            689999999999999999764

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.37  E-value=0.00073  Score=51.59  Aligned_cols=30  Identities=27%  Similarity=0.489  Sum_probs=22.9

Q ss_pred             EEEEECCCCchHHHHHHHHhCC-----CCCCceEE
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE-----LQPSSGTV  113 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl-----~~p~~G~i  113 (266)
                      .++|+|..|+|||||++-+.+-     +.|+.|..
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~   41 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS   41 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEE
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCcccCcccccc
Confidence            5899999999999999977542     34565543

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.32  E-value=0.00077  Score=54.31  Aligned_cols=22  Identities=45%  Similarity=0.872  Sum_probs=19.9

Q ss_pred             EEEECCCCchHHHHHHHHhCCC
Q 024529           85 IAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        85 ~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      +.+.||.|+|||||.+++++.+
T Consensus        38 ~Ll~GPpG~GKTtla~~la~~~   59 (239)
T d1ixsb2          38 LLLFGPPGLGKTTLAHVIAHEL   59 (239)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6799999999999999999754

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.32  E-value=0.001  Score=50.65  Aligned_cols=22  Identities=23%  Similarity=0.659  Sum_probs=19.6

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      +++|+|+.|+|||||++.+.+-
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4889999999999999988763

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.32  E-value=0.00089  Score=51.70  Aligned_cols=21  Identities=19%  Similarity=0.686  Sum_probs=18.6

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q 024529           84 RIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      .++|+|..|+|||||++.+.+
T Consensus         4 Kv~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999997764

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.31  E-value=0.001  Score=53.43  Aligned_cols=24  Identities=21%  Similarity=0.403  Sum_probs=21.8

Q ss_pred             EeCCcEEEEECCCCchHHHHHHHH
Q 024529           79 IDLDSRIAMVGPNGIGKSTILKLI  102 (266)
Q Consensus        79 i~~Ge~~~l~G~nGsGKSTLl~~l  102 (266)
                      +++|+++.|.||.|||||||.--+
T Consensus        33 lp~G~~~li~G~pGsGKT~~~lq~   56 (254)
T d1pzna2          33 IETQAITEVFGEFGSGKTQLAHTL   56 (254)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHH
T ss_pred             ccCCEEEEEEcCCCCCHHHHHHHH
Confidence            789999999999999999997655

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.29  E-value=0.0011  Score=50.05  Aligned_cols=22  Identities=14%  Similarity=0.525  Sum_probs=19.5

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|..|+|||||++.+.+-
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~~   23 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMYD   23 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999998753

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.29  E-value=0.0013  Score=49.93  Aligned_cols=22  Identities=23%  Similarity=0.552  Sum_probs=19.4

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|+.|+|||||++-+.+-
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5899999999999999988753

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=96.27  E-value=0.00064  Score=52.42  Aligned_cols=22  Identities=41%  Similarity=0.590  Sum_probs=19.6

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++++|+.|+|||||++.+.+-
T Consensus        19 KI~lvG~~~vGKTsLi~~l~~~   40 (182)
T d1moza_          19 RILILGLDGAGKTTILYRLQIG   40 (182)
T ss_dssp             EEEEEEETTSSHHHHHHHTCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5889999999999999998654

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.26  E-value=0.0012  Score=52.62  Aligned_cols=26  Identities=23%  Similarity=0.317  Sum_probs=23.4

Q ss_pred             EeCCcEEEEECCCCchHHHHHHHHhC
Q 024529           79 IDLDSRIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        79 i~~Ge~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      +++|+++.|.|++|+|||||.--++-
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a~   56 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSCV   56 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            78999999999999999999877753

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.26  E-value=0.0011  Score=58.27  Aligned_cols=23  Identities=30%  Similarity=0.541  Sum_probs=21.0

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .++|+|..|+|||||+|.|.|..
T Consensus        58 ~Iai~G~~n~GKSSLiNaL~G~~   80 (400)
T d1tq4a_          58 NVAVTGETGSGKSSFINTLRGIG   80 (400)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            38999999999999999999954

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.0011  Score=53.25  Aligned_cols=25  Identities=16%  Similarity=0.203  Sum_probs=23.0

Q ss_pred             EeCCcEEEEECCCCchHHHHHHHHh
Q 024529           79 IDLDSRIAMVGPNGIGKSTILKLIA  103 (266)
Q Consensus        79 i~~Ge~~~l~G~nGsGKSTLl~~l~  103 (266)
                      |++|.++.|.||+|||||||.-.++
T Consensus        34 ip~G~~~~i~G~~GsGKT~lalq~~   58 (258)
T d1v5wa_          34 IESMAITEAFGEFRTGKTQLSHTLC   58 (258)
T ss_dssp             BCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred             CcCCEEEEEECCCCCCHHHHHHHHH
Confidence            6799999999999999999988776

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.001  Score=50.49  Aligned_cols=21  Identities=14%  Similarity=0.480  Sum_probs=18.6

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q 024529           84 RIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      .++|+|..|+|||||++.+.+
T Consensus         5 KivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999998764

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.25  E-value=0.001  Score=56.19  Aligned_cols=25  Identities=36%  Similarity=0.652  Sum_probs=21.3

Q ss_pred             CcEEEEECCCCchHHHHHHHHhCCC
Q 024529           82 DSRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        82 Ge~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      +.-+.++||.|||||+|.|+|+...
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~~~   73 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAKLA   73 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHhhcc
Confidence            3456799999999999999999864

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.0013  Score=49.78  Aligned_cols=22  Identities=27%  Similarity=0.599  Sum_probs=19.0

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|+.|+|||||++.+.+-
T Consensus         6 KivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3889999999999999887653

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.0022  Score=48.65  Aligned_cols=21  Identities=29%  Similarity=0.597  Sum_probs=19.0

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q 024529           84 RIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      .++|+|+.|+|||||++-+.+
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            478999999999999998875

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.24  E-value=0.0011  Score=50.40  Aligned_cols=21  Identities=29%  Similarity=0.665  Sum_probs=18.9

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q 024529           84 RIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      .++|+|..|+|||||++-+..
T Consensus         6 Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999998874

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.24  E-value=0.00092  Score=51.28  Aligned_cols=22  Identities=23%  Similarity=0.522  Sum_probs=19.3

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|++|+|||||++.+.+-
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5789999999999999887754

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.18  E-value=0.0016  Score=49.12  Aligned_cols=21  Identities=19%  Similarity=0.491  Sum_probs=18.7

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q 024529           84 RIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      .++|+|+.|+|||||++-+.+
T Consensus         4 Kv~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           4 KIIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999998864

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.17  E-value=0.0012  Score=52.72  Aligned_cols=42  Identities=24%  Similarity=0.392  Sum_probs=27.6

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CEEEEEecCHHHH
Q 024529          192 KPHIILLDEPSNHLDLDAVEALIQGLVLFQ--GGILMVSHDEHLI  234 (266)
Q Consensus       192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~tiiivtHd~~~~  234 (266)
                      +.+++++||.- ++.......+...+....  ..+++++++.+-+
T Consensus       101 ~~kviiiDe~d-~~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i  144 (224)
T d1sxjb2         101 KHKIVILDEAD-SMTAGAQQALRRTMELYSNSTRFAFACNQSNKI  144 (224)
T ss_dssp             CCEEEEEESGG-GSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGS
T ss_pred             ceEEEEEeccc-ccchhHHHHHhhhccccccceeeeeccCchhhh
Confidence            35799999965 455556666666666543  3467778776543

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.15  E-value=0.0015  Score=53.78  Aligned_cols=25  Identities=48%  Similarity=0.751  Sum_probs=21.6

Q ss_pred             CcEEEEECCCCchHHHHHHHHhCCC
Q 024529           82 DSRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        82 Ge~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      ..-+.+.||.|||||+|.+.|+..+
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~~~   69 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAGEA   69 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEeeCCCCCCccHHHHHHHHHc
Confidence            3458899999999999999999754

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.13  E-value=0.0016  Score=49.84  Aligned_cols=22  Identities=32%  Similarity=0.730  Sum_probs=19.5

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      +++|+|+.|+|||||++.+.+-
T Consensus         9 Ki~vvG~~~vGKTsli~~l~~~   30 (177)
T d1x3sa1           9 KILIIGESGVGKSSLLLRFTDD   30 (177)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3889999999999999988763

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.13  E-value=0.0013  Score=50.25  Aligned_cols=20  Identities=25%  Similarity=0.649  Sum_probs=17.7

Q ss_pred             EEEECCCCchHHHHHHHHhC
Q 024529           85 IAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        85 ~~l~G~nGsGKSTLl~~l~G  104 (266)
                      ++|+|+.|+|||||++-+.+
T Consensus         9 I~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            88999999999999977654

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.12  E-value=0.0012  Score=53.06  Aligned_cols=22  Identities=32%  Similarity=0.543  Sum_probs=20.3

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      ++||+|...||||||++.|.+.
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCccHHHHHHHHHhh
Confidence            6999999999999999999874

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=96.12  E-value=0.0014  Score=53.87  Aligned_cols=33  Identities=24%  Similarity=0.325  Sum_probs=26.6

Q ss_pred             eeeceEEEeCCcEEEEECCCCchHHHHHHHHhC
Q 024529           72 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        72 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      |+++..=+.+|+++.|.|++|+|||||+.-|+-
T Consensus        25 lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             HHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            454443478999999999999999999877763

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=96.09  E-value=0.0013  Score=52.69  Aligned_cols=26  Identities=31%  Similarity=0.321  Sum_probs=16.4

Q ss_pred             CCcEEEEECCCCchHHHHHHHHhCCC
Q 024529           81 LDSRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      ...+++++||+|+||||.+-=|+-.+
T Consensus        11 ~p~vi~lvGptGvGKTTTiAKLA~~~   36 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGKATTAGKLAYFY   36 (211)
T ss_dssp             SSEEEEEECSCCC----HHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            44679999999999999766666433

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=96.08  E-value=0.00097  Score=50.93  Aligned_cols=24  Identities=38%  Similarity=0.462  Sum_probs=20.7

Q ss_pred             EEEEECCCCchHHHHHHHHhCCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGELQ  107 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~~  107 (266)
                      .+.|+|++|+|||||++.+.+-..
T Consensus        14 kIvlvG~~~vGKTSli~rl~~~~~   37 (173)
T d1e0sa_          14 RILMLGLDAAGKTTILYKLKLGQS   37 (173)
T ss_dssp             EEEEEEETTSSHHHHHHHTTCCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            578999999999999999986543

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.05  E-value=0.0011  Score=50.94  Aligned_cols=30  Identities=30%  Similarity=0.465  Sum_probs=25.6

Q ss_pred             EEEEECCCCchHHHHHHHHhCCCCCCceEE
Q 024529           84 RIAMVGPNGIGKSTILKLIAGELQPSSGTV  113 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i  113 (266)
                      .+.|+|..|+|||||++-+.....|+.|..
T Consensus         4 KivllG~~~vGKTsl~~r~~~~~~~t~~~~   33 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKIIHEAGTGIV   33 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHSCCCSEE
T ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCccEE
Confidence            578999999999999999877667777754

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.05  E-value=0.0013  Score=50.25  Aligned_cols=21  Identities=29%  Similarity=0.561  Sum_probs=18.8

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q 024529           84 RIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      .++|+|..|+|||||++-+.+
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            588999999999999998765

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.04  E-value=0.0017  Score=50.59  Aligned_cols=20  Identities=30%  Similarity=0.667  Sum_probs=18.4

Q ss_pred             EEEECCCCchHHHHHHHHhC
Q 024529           85 IAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        85 ~~l~G~nGsGKSTLl~~l~G  104 (266)
                      ++|+|+.|+|||||++.+.+
T Consensus         9 ivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhh
Confidence            88999999999999998775

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.04  E-value=0.0012  Score=53.22  Aligned_cols=40  Identities=20%  Similarity=0.349  Sum_probs=30.5

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhcCC--EEEEEecCHH
Q 024529          192 KPHIILLDEPSNHLDLDAVEALIQGLVLFQG--GILMVSHDEH  232 (266)
Q Consensus       192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--tiiivtHd~~  232 (266)
                      +..++++||.-. |.......+.+.+.+...  .+|++|++.+
T Consensus       131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~  172 (252)
T d1sxje2         131 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMS  172 (252)
T ss_dssp             CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred             CceEEEeccccc-cccccchhhhcccccccccccceeeecccc
Confidence            567999999854 778888888888876543  4788888775

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.02  E-value=0.0015  Score=50.34  Aligned_cols=21  Identities=24%  Similarity=0.458  Sum_probs=18.9

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q 024529           84 RIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      .++|+|..|+|||||++-+.+
T Consensus         7 KivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999987765

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.02  E-value=0.0016  Score=54.42  Aligned_cols=21  Identities=38%  Similarity=0.388  Sum_probs=18.7

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q 024529           84 RIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      ++||-|+.|||||||.+.|.-
T Consensus        29 iIGi~G~qGSGKSTl~~~l~~   49 (286)
T d1odfa_          29 FIFFSGPQGSGKSFTSIQIYN   49 (286)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHH
Confidence            789999999999999987753

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.02  E-value=0.002  Score=48.86  Aligned_cols=22  Identities=23%  Similarity=0.561  Sum_probs=19.0

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|+.|+|||||++-+.+-
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5789999999999999976643

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.02  E-value=0.0015  Score=53.36  Aligned_cols=22  Identities=32%  Similarity=0.499  Sum_probs=19.9

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      -+.|.||.|||||+|.+.|+..
T Consensus        42 ~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          42 SVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhhc
Confidence            4789999999999999999864

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.01  E-value=0.0015  Score=52.26  Aligned_cols=29  Identities=34%  Similarity=0.494  Sum_probs=23.7

Q ss_pred             EEEEECCCCchHHHHHHHH-hCCCCCCceE
Q 024529           84 RIAMVGPNGIGKSTILKLI-AGELQPSSGT  112 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l-~Gl~~p~~G~  112 (266)
                      .+.|+|++|+|||||++-+ .+-..|+-|-
T Consensus         8 KilllG~~~vGKTsll~~~~~~~~~pTiG~   37 (221)
T d1azta2           8 RLLLLGAGESGKSTIVKQMRILHVVLTSGI   37 (221)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCCCSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCcCCCCCe
Confidence            5789999999999999876 4556688773

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.002  Score=48.87  Aligned_cols=21  Identities=19%  Similarity=0.550  Sum_probs=19.0

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q 024529           84 RIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      .++++|+.|+|||||++.+.+
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            578999999999999998874

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.0014  Score=50.00  Aligned_cols=20  Identities=30%  Similarity=0.544  Sum_probs=18.4

Q ss_pred             EEEECCCCchHHHHHHHHhC
Q 024529           85 IAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        85 ~~l~G~nGsGKSTLl~~l~G  104 (266)
                      ++|+|..|+|||||++.+.+
T Consensus         8 I~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999998764

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.99  E-value=0.0017  Score=55.35  Aligned_cols=24  Identities=29%  Similarity=0.545  Sum_probs=21.0

Q ss_pred             CcEEEEECCCCchHHHHHHHHhCC
Q 024529           82 DSRIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        82 Ge~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .-++||+||-|||||||+..|...
T Consensus        51 ~~~igitG~pGaGKSTli~~l~~~   74 (323)
T d2qm8a1          51 AIRVGITGVPGVGKSTTIDALGSL   74 (323)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             ceEEeeeCCCCCCHHHHHHHHHHH
Confidence            457999999999999999998753

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=95.99  E-value=0.002  Score=52.02  Aligned_cols=28  Identities=21%  Similarity=0.350  Sum_probs=23.6

Q ss_pred             CcEEEEECCCCchHHHHHHHHhCCCCCC
Q 024529           82 DSRIAMVGPNGIGKSTILKLIAGELQPS  109 (266)
Q Consensus        82 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~  109 (266)
                      ...+.|.||.|+||||+++.|+..+...
T Consensus        43 ~~~lll~GppGtGKT~l~~~l~~~l~~~   70 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTLRKLWELYKDK   70 (276)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHHhcc
Confidence            3578999999999999999999776543

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.97  E-value=0.0017  Score=51.76  Aligned_cols=40  Identities=20%  Similarity=0.279  Sum_probs=28.4

Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhhcC-CE-EEEEecCHHH
Q 024529          193 PHIILLDEPSNHLDLDAVEALIQGLVLFQ-GG-ILMVSHDEHL  233 (266)
Q Consensus       193 p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~t-iiivtHd~~~  233 (266)
                      .+++++||. ..+.......+...+.+.. .+ ++++|++...
T Consensus       100 ~kiiiiDe~-d~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~  141 (227)
T d1sxjc2         100 FKLIILDEA-DAMTNAAQNALRRVIERYTKNTRFCVLANYAHK  141 (227)
T ss_dssp             CEEEEETTG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred             eEEEEEecc-ccchhhHHHHHHHHhhhcccceeeccccCcHHH
Confidence            469999996 4677777788888887654 34 5677766543

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.0011  Score=50.69  Aligned_cols=22  Identities=32%  Similarity=0.552  Sum_probs=18.2

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|+.|+|||||++.+.+-
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~~   26 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLTG   26 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC--
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4899999999999999987653

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.92  E-value=0.0018  Score=49.26  Aligned_cols=21  Identities=29%  Similarity=0.551  Sum_probs=18.7

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q 024529           84 RIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      .++++|+.|+|||||++.+.+
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998765

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=95.91  E-value=0.0014  Score=54.84  Aligned_cols=32  Identities=31%  Similarity=0.371  Sum_probs=27.9

Q ss_pred             eceEEEeCCcEEEEECCCCchHHHHHHHHhCC
Q 024529           74 NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        74 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      |.=+.|.+|+..+|+|+.|+|||||+..|+-.
T Consensus        35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             HHHSCCBTTCEEEEEECSSSSHHHHHHHHHHH
T ss_pred             eecccccCCCeeeEeCCCCCCHHHHHHHHHHH
Confidence            44467889999999999999999999998753

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.87  E-value=0.0013  Score=50.26  Aligned_cols=21  Identities=24%  Similarity=0.642  Sum_probs=9.1

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q 024529           84 RIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      .++|+|..|+|||||++.+++
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           8 KLLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEEECCCCC-----------
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            388999999999999987765

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.86  E-value=0.0021  Score=49.71  Aligned_cols=29  Identities=34%  Similarity=0.541  Sum_probs=23.5

Q ss_pred             EEEEECCCCchHHHHHHHHhC--CCCCCceE
Q 024529           84 RIAMVGPNGIGKSTILKLIAG--ELQPSSGT  112 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~G--l~~p~~G~  112 (266)
                      .+.|+|.+|+|||||++-+.-  -..||-|-
T Consensus         4 KivllG~~~vGKTsll~r~~f~~~~~pTiG~   34 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQMRIIHGQDPTKGI   34 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHSCCCCSSE
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCeeee
Confidence            578999999999999998843  24688883

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.85  E-value=0.002  Score=48.73  Aligned_cols=22  Identities=23%  Similarity=0.549  Sum_probs=19.0

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++|+|..|+|||||++-+.+-
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999987643

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.81  E-value=0.0021  Score=48.75  Aligned_cols=21  Identities=29%  Similarity=0.670  Sum_probs=18.3

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q 024529           84 RIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      .++|+|+.|+|||||++.+.+
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            389999999999999997644

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.81  E-value=0.0017  Score=53.56  Aligned_cols=27  Identities=33%  Similarity=0.507  Sum_probs=22.9

Q ss_pred             eCCcEEEEECCCCchHHHHHHHHhCCC
Q 024529           80 DLDSRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .+..-+.|.||.|+|||+|.+.+++..
T Consensus        39 ~~~~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          39 TPSKGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CCCCeEEEECCCCCcchhHHHHHHHHh
Confidence            344458899999999999999999865

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=95.80  E-value=0.0022  Score=48.76  Aligned_cols=29  Identities=28%  Similarity=0.582  Sum_probs=22.5

Q ss_pred             EEEEECCCCchHHHHHHHHhC-----CCCCCceE
Q 024529           84 RIAMVGPNGIGKSTILKLIAG-----ELQPSSGT  112 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~G-----l~~p~~G~  112 (266)
                      +++|+|+.|+|||||++.+.+     .+.|+.|.
T Consensus         6 KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~   39 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKAD   39 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCE
T ss_pred             EEEEECCCCcCHHHHHHHHHhCCCCcccCCcccc
Confidence            588999999999999998754     23455554

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.79  E-value=0.0023  Score=49.23  Aligned_cols=22  Identities=23%  Similarity=0.450  Sum_probs=19.3

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .++++|+.|+|||||++-+.+-
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999977653

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=95.77  E-value=0.0023  Score=52.30  Aligned_cols=22  Identities=41%  Similarity=0.904  Sum_probs=20.1

Q ss_pred             EEEECCCCchHHHHHHHHhCCC
Q 024529           85 IAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        85 ~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      +.+.||.|||||+|.+.|+...
T Consensus        45 iLl~GppGtGKT~la~aia~~~   66 (247)
T d1ixza_          45 VLLVGPPGVGKTHLARAVAGEA   66 (247)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEecCCCCChhHHHHHHHHHc
Confidence            7899999999999999999754

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.74  E-value=0.0024  Score=49.29  Aligned_cols=21  Identities=29%  Similarity=0.521  Sum_probs=18.5

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q 024529           84 RIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      .++|+|..|+|||||++.+..
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            489999999999999988654

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.68  E-value=0.0026  Score=48.89  Aligned_cols=21  Identities=33%  Similarity=0.634  Sum_probs=17.9

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q 024529           84 RIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      .++++|..|+|||||++-+..
T Consensus         4 KivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            578999999999999976644

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.64  E-value=0.0049  Score=47.71  Aligned_cols=31  Identities=19%  Similarity=0.352  Sum_probs=24.6

Q ss_pred             eeeceEEEeCCcEEEEECCCCchHHHHHHHHh
Q 024529           72 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIA  103 (266)
Q Consensus        72 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~  103 (266)
                      ++..-+.+ .|.-+.|.|++|+|||||.-.+.
T Consensus         6 ~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~   36 (177)
T d1knxa2           6 IHGVLLEV-FGVGVLLTGRSGIGKSECALDLI   36 (177)
T ss_dssp             EEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred             EEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence            45555556 67889999999999999987665

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.58  E-value=0.0026  Score=49.31  Aligned_cols=21  Identities=24%  Similarity=0.458  Sum_probs=18.2

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q 024529           84 RIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      .++|+|+.|+|||||++.+.+
T Consensus         5 KvvllG~~~vGKTSli~r~~~   25 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTT   25 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999977654

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.57  E-value=0.0033  Score=50.44  Aligned_cols=21  Identities=29%  Similarity=0.340  Sum_probs=19.4

Q ss_pred             EEEEECCCCchHHHHHHHHhC
Q 024529           84 RIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      ++||+|+-||||||..+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999999953

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.57  E-value=0.003  Score=51.76  Aligned_cols=22  Identities=41%  Similarity=0.702  Sum_probs=20.2

Q ss_pred             EEEECCCCchHHHHHHHHhCCC
Q 024529           85 IAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        85 ~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      +.|.||.|||||+|.+.++...
T Consensus        41 iLL~GppGtGKT~l~~ala~~~   62 (258)
T d1e32a2          41 ILLYGPPGTGKTLIARAVANET   62 (258)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             eEEecCCCCCchHHHHHHHHHh
Confidence            8899999999999999999853

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.57  E-value=0.0027  Score=52.86  Aligned_cols=24  Identities=33%  Similarity=0.487  Sum_probs=21.9

Q ss_pred             cEEEEECCCCchHHHHHHHHhCCC
Q 024529           83 SRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        83 e~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      -+|+|+||-++||||||+.|.|..
T Consensus        33 ~vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             EEEEEECCCCCCHHHHHHHHcCCC
Confidence            489999999999999999999864

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.51  E-value=0.0032  Score=50.39  Aligned_cols=24  Identities=33%  Similarity=0.587  Sum_probs=21.4

Q ss_pred             cEEEEECCCCchHHHHHHHHhCCC
Q 024529           83 SRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        83 e~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .+++|=|+-||||||+++.|+-.+
T Consensus         3 k~IviEG~~GsGKST~~~~L~~~l   26 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTKTY   26 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHH
Confidence            478999999999999999998654

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.51  E-value=0.002  Score=52.23  Aligned_cols=23  Identities=30%  Similarity=0.499  Sum_probs=19.5

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      ++.|.||.|+||||+++.++..+
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHH
Confidence            45667999999999999998654

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.49  E-value=0.0016  Score=55.36  Aligned_cols=26  Identities=31%  Similarity=0.493  Sum_probs=23.6

Q ss_pred             cEEEEECCCCchHHHHHHHHhCCCCC
Q 024529           83 SRIAMVGPNGIGKSTILKLIAGELQP  108 (266)
Q Consensus        83 e~~~l~G~nGsGKSTLl~~l~Gl~~p  108 (266)
                      .-+.|.||-|+|||||+|.++++++|
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~iLp~   54 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAALLPE   54 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred             CeEEEECCCCccHHHHHHHHHHhCCC
Confidence            45889999999999999999999876

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=95.42  E-value=0.0046  Score=48.16  Aligned_cols=22  Identities=41%  Similarity=0.578  Sum_probs=20.3

Q ss_pred             EEEECCCCchHHHHHHHHhCCC
Q 024529           85 IAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        85 ~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      +||+|.-.+|||||++.|.|..
T Consensus         8 IaiiGhvd~GKSTL~~~L~g~~   29 (195)
T d1kk1a3           8 IGMVGHVDHGKTTLTKALTGVW   29 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEeccCCcHHHHHHHHHhhh
Confidence            7999999999999999999854

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.33  E-value=0.0029  Score=56.18  Aligned_cols=23  Identities=39%  Similarity=0.718  Sum_probs=21.2

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      -+.++||+|||||-|.|.|++++
T Consensus        51 NILliGPTGvGKTlLAr~LAk~l   73 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAKLA   73 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHh
Confidence            48899999999999999999965

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=95.24  E-value=0.0063  Score=50.10  Aligned_cols=28  Identities=21%  Similarity=0.496  Sum_probs=23.9

Q ss_pred             EEeCCcEEEEECCCCchHHHHHHHHhCC
Q 024529           78 GIDLDSRIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        78 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      =++.|.++-|.||+|||||||+-.++..
T Consensus        50 Gi~~g~itei~G~~gsGKTtl~l~~~~~   77 (263)
T d1u94a1          50 GLPMGRIVEIYGPESSGKTTLTLQVIAA   77 (263)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CccCceEEEEecCCCcHHHHHHHHHHHH
Confidence            4679999999999999999997666554

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.16  E-value=0.009  Score=46.11  Aligned_cols=31  Identities=19%  Similarity=0.341  Sum_probs=23.3

Q ss_pred             eeeceEEEeCCcEEEEECCCCchHHHHHHHHh
Q 024529           72 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIA  103 (266)
Q Consensus        72 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~  103 (266)
                      ++..-+.+ .|.=+.|.|++|+|||||.-.+.
T Consensus         5 lH~~~v~~-~g~gvl~~G~sG~GKStlal~l~   35 (176)
T d1kkma_           5 MHGVLVDI-YGLGVLITGDSGVGKSETALELV   35 (176)
T ss_dssp             EEEEEEEE-TTEEEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHH
Confidence            44444444 57789999999999999887664

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.03  E-value=0.0056  Score=51.41  Aligned_cols=58  Identities=14%  Similarity=0.053  Sum_probs=35.3

Q ss_pred             CCCChHHHHHHHHHHHHccCCCEEEE--eCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHH
Q 024529          173 YTLSGGQKSRVAFAKITFKKPHIILL--DEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHL  233 (266)
Q Consensus       173 ~~LSgGqkqRv~lAral~~~p~lllL--DEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~  233 (266)
                      ..++.-+.+++.-..-+...|-++++  +|..   ......++.+.....+..++.++...+.
T Consensus       196 ~~~~~~e~~~~~~~~~~~~kP~~~v~Nk~d~~---~~e~~~~~~~~~~~~~~~vi~~sa~~E~  255 (319)
T d1wxqa1         196 TKWSQDDLLAFASEIRRVNKPMVIAANKADAA---SDEQIKRLVREEEKRGYIVIPTSAAAEL  255 (319)
T ss_dssp             GGCCHHHHHHHHHHHHHHHSCEEEEEECGGGS---CHHHHHHHHHHHHHTTCEEEEECHHHHH
T ss_pred             hhcCHHHHHHhHHHhhhhcCchhhhcccccch---hhHHHHHHHHHHhhcCCEEEEecHHHHH
Confidence            35677777777776666777777764  3332   2344555555555556677767766554

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.00  E-value=0.0059  Score=46.86  Aligned_cols=28  Identities=29%  Similarity=0.469  Sum_probs=22.2

Q ss_pred             EEEEECCCCchHHHHHHHHhCC---CCCCce
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE---LQPSSG  111 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl---~~p~~G  111 (266)
                      .+.|+|..|+|||||++-+..-   +.||-|
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~~~~~~~pTiG   34 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRIIHGSGVPTTG   34 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTSSCCCCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCceee
Confidence            4789999999999999988543   346656

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.81  E-value=0.0072  Score=50.96  Aligned_cols=23  Identities=26%  Similarity=0.612  Sum_probs=20.8

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .+.++||+|+|||.|.+.|+-.+
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~~l   76 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSKAL   76 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCcchhHHHHHHHHhhc
Confidence            57899999999999999999764

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=94.80  E-value=0.0072  Score=50.38  Aligned_cols=22  Identities=32%  Similarity=0.576  Sum_probs=20.6

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .+||+|...||||||++.|++-
T Consensus        12 kiGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1          12 KTGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            5999999999999999999975

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=94.78  E-value=0.012  Score=45.12  Aligned_cols=24  Identities=25%  Similarity=0.338  Sum_probs=19.9

Q ss_pred             eCCcEEEEECCCCchHHHHHHHHh
Q 024529           80 DLDSRIAMVGPNGIGKSTILKLIA  103 (266)
Q Consensus        80 ~~Ge~~~l~G~nGsGKSTLl~~l~  103 (266)
                      -.|.=+.|.|++|+|||||.-.+.
T Consensus        13 ~~g~gvli~G~sg~GKS~la~~l~   36 (169)
T d1ko7a2          13 VYGVGVLITGDSGIGKSETALELI   36 (169)
T ss_dssp             ETTEEEEEEESTTSSHHHHHHHHH
T ss_pred             ECCEEEEEEeCCCCCHHHHHHHHH
Confidence            357889999999999999875554

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.78  E-value=0.0077  Score=49.91  Aligned_cols=23  Identities=39%  Similarity=0.596  Sum_probs=21.2

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .++|+|.-.||||||++.|+|.-
T Consensus        28 ~ivvvG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          28 QIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             eEEEEcCCCCCHHHHHHHHhCCC
Confidence            38899999999999999999975

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=94.77  E-value=0.0091  Score=49.68  Aligned_cols=26  Identities=38%  Similarity=0.611  Sum_probs=22.6

Q ss_pred             EEEEECCCCchHHHHHHHHhCCCC-CC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGELQ-PS  109 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~~-p~  109 (266)
                      .++|+|.-.||||||++.|+|.-- |.
T Consensus        26 ~ivVvG~~ssGKSSliNaLlG~~~lP~   52 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVLENIVGRDFLPR   52 (306)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSCCCCC
T ss_pred             eEEEEeCCCCCHHHHHHHHhCCCCCCC
Confidence            478999999999999999999753 54

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.76  E-value=0.0074  Score=49.98  Aligned_cols=31  Identities=19%  Similarity=0.392  Sum_probs=26.9

Q ss_pred             eceEEEeCCcEEEEECCCCchHHHHHHHHhC
Q 024529           74 NLNFGIDLDSRIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        74 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      |.=+.+-+|++.+|+|+.|+|||||+..|+-
T Consensus        60 D~l~pigkGQr~~If~~~g~GKt~l~~~i~~   90 (276)
T d2jdid3          60 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN   90 (276)
T ss_dssp             HHHSCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred             eeeccccCCCEEEeeCCCCCCHHHHHHHHHH
Confidence            4557889999999999999999999777753

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.54  E-value=0.009  Score=47.42  Aligned_cols=21  Identities=33%  Similarity=0.567  Sum_probs=18.8

Q ss_pred             EEEECCCCchHHHHHHHHhCC
Q 024529           85 IAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        85 ~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      +.|.||.|||||-|+++++--
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            679999999999999999753

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.51  E-value=0.0067  Score=48.49  Aligned_cols=22  Identities=36%  Similarity=0.498  Sum_probs=19.5

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      ++.|.|.=|||||||++-+..-
T Consensus         5 v~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEEeeCCCCCHHHHHHHHHhc
Confidence            6789999999999999998763

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=94.50  E-value=0.0082  Score=49.50  Aligned_cols=20  Identities=35%  Similarity=0.640  Sum_probs=18.2

Q ss_pred             EEEEECCCCchHHHHHHHHh
Q 024529           84 RIAMVGPNGIGKSTILKLIA  103 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~  103 (266)
                      -++|+|+.|||||||+..|.
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll   23 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALL   23 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHH
Confidence            37999999999999999983

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=94.47  E-value=0.012  Score=46.11  Aligned_cols=24  Identities=33%  Similarity=0.522  Sum_probs=21.4

Q ss_pred             EEEEECCCCchHHHHHHHHhCCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGELQ  107 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~~  107 (266)
                      -+||+|.-.+|||||++.|.|...
T Consensus        10 ni~iiGhVd~GKSTL~~~L~~~~~   33 (205)
T d2qn6a3          10 NIGVVGHVDHGKTTLVQAITGIWT   33 (205)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred             EEEEEEccCCcHHHHHHHHHhhhc
Confidence            489999999999999999998654

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.38  E-value=0.011  Score=48.71  Aligned_cols=28  Identities=25%  Similarity=0.429  Sum_probs=23.3

Q ss_pred             EEeCCcEEEEECCCCchHHHHHHHHhCC
Q 024529           78 GIDLDSRIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        78 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      =++.|.++-|.||+|||||||+-.++..
T Consensus        56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~   83 (269)
T d1mo6a1          56 GLPRGRVIEIYGPESSGKTTVALHAVAN   83 (269)
T ss_dssp             SBCSSSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CcccceeEEEecCCCcHHHHHHHHHHHH
Confidence            3678999999999999999997555543

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=94.20  E-value=0.0099  Score=51.17  Aligned_cols=30  Identities=20%  Similarity=0.180  Sum_probs=26.5

Q ss_pred             EEeCCcEEEEECCCCchHHHHHHHHhCCCC
Q 024529           78 GIDLDSRIAMVGPNGIGKSTILKLIAGELQ  107 (266)
Q Consensus        78 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~  107 (266)
                      .++++..+.+.||.|+||||+.+.|++...
T Consensus       150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~  179 (362)
T d1svma_         150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG  179 (362)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            457888999999999999999999998753

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=94.15  E-value=0.012  Score=48.57  Aligned_cols=22  Identities=27%  Similarity=0.548  Sum_probs=20.5

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      .+||+|-.-+|||||++.|++-
T Consensus         4 ~~GivG~Pn~GKSTlf~~lt~~   25 (278)
T d1jala1           4 KCGIVGLPNVGKSTLFNALTKA   25 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHCC
Confidence            6899999999999999999965

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.12  E-value=0.013  Score=46.14  Aligned_cols=19  Identities=21%  Similarity=0.429  Sum_probs=18.0

Q ss_pred             EEEECCCCchHHHHHHHHh
Q 024529           85 IAMVGPNGIGKSTILKLIA  103 (266)
Q Consensus        85 ~~l~G~nGsGKSTLl~~l~  103 (266)
                      ++|+|.-++|||||+..|.
T Consensus         6 i~iiGhvd~GKSTL~~~Ll   24 (204)
T d2c78a3           6 VGTIGHVDHGKTTLTAALT   24 (204)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHH
Confidence            8999999999999999995

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.97  E-value=0.012  Score=48.63  Aligned_cols=24  Identities=25%  Similarity=0.415  Sum_probs=20.2

Q ss_pred             EEEEECCCCchHHHHHHHH---hCCCC
Q 024529           84 RIAMVGPNGIGKSTILKLI---AGELQ  107 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l---~Gl~~  107 (266)
                      -++|+|..|||||||...|   +|...
T Consensus         8 ni~i~gh~~~GKTtL~e~ll~~~g~~~   34 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERILYYTGRIH   34 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTSSC
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhcCccc
Confidence            3799999999999999998   45543

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.97  E-value=0.014  Score=45.87  Aligned_cols=52  Identities=10%  Similarity=0.129  Sum_probs=34.2

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhcC-CE-EEEEecCHHHH-HhhcCEEEEE
Q 024529          192 KPHIILLDEPSNHLDLDAVEALIQGLVLFQ-GG-ILMVSHDEHLI-SGSVEELWVV  244 (266)
Q Consensus       192 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~t-iiivtHd~~~~-~~~~d~i~~l  244 (266)
                      +.+|+++||.= .|...+...+++.+.+.. .+ +|++|++..-+ ..+-.|+..+
T Consensus       108 ~~kviIide~d-~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~ll~tI~SRc~~i  162 (207)
T d1a5ta2         108 GAKVVWVTDAA-LLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLH  162 (207)
T ss_dssp             SCEEEEESCGG-GBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred             ccceEEechhh-hhhhhhhHHHHHHHHhhcccceeeeeecChhhhhhhhcceeEEE
Confidence            36799999863 455677788888888753 34 68889887633 3343444333

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=93.67  E-value=0.025  Score=48.00  Aligned_cols=27  Identities=41%  Similarity=0.491  Sum_probs=22.7

Q ss_pred             EEEEECCCCchHHHHHHHHhCCCCCCc
Q 024529           84 RIAMVGPNGIGKSTILKLIAGELQPSS  110 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~  110 (266)
                      +|.|=|+-||||||+++.|+.-+....
T Consensus         8 rI~iEG~iGsGKSTl~~~L~~~l~~~~   34 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTGRVMASAASGGS   34 (333)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSGGGCSS
T ss_pred             EEEEECCccCCHHHHHHHHHHHhccCC
Confidence            578889999999999999998765443

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=93.50  E-value=0.016  Score=50.25  Aligned_cols=42  Identities=7%  Similarity=0.012  Sum_probs=31.8

Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHHh
Q 024529          195 IILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISG  236 (266)
Q Consensus       195 lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~~~~  236 (266)
                      ++++||.-+-........++...+.++..+++++.++..+..
T Consensus       279 ~l~lDE~~~~~~~~~l~~~l~~~Rk~Gv~~~l~~Qs~~ql~~  320 (433)
T d1e9ra_         279 WLFIDELASLEKLASLADALTKGRKAGLRVVAGLQSTSQLDD  320 (433)
T ss_dssp             EEEESCGGGSCBCSSHHHHHHHCTTTTEEEEEEESCHHHHHH
T ss_pred             EEEechHhhhcccHHHHHHHHHhCCCCceEEEEeccHHHHHH
Confidence            678899766555455666777777788899999999877643

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=92.96  E-value=0.027  Score=44.04  Aligned_cols=22  Identities=27%  Similarity=0.572  Sum_probs=19.2

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      -+.|+||.|.|||++..-|+-.
T Consensus        45 n~lLvG~pGVGKTalv~~LA~r   66 (195)
T d1jbka_          45 NPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEecCCcccHHHHHHHHHH
Confidence            3689999999999999988854

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=92.95  E-value=0.022  Score=48.30  Aligned_cols=23  Identities=35%  Similarity=0.628  Sum_probs=19.4

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .|+|=|+-||||||+++.|+..+
T Consensus         6 rI~IEG~iGsGKTTl~~~La~~l   28 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTTQLLVALG   28 (329)
T ss_dssp             EEEECSCTTSSHHHHHHHHTC--
T ss_pred             EEEEECCcCCCHHHHHHHHHHHh
Confidence            47899999999999999998654

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=92.94  E-value=0.023  Score=47.91  Aligned_cols=34  Identities=12%  Similarity=0.167  Sum_probs=25.3

Q ss_pred             eeeceEEEeCCcEEEEECCCCchHHHHHHHHhCCC
Q 024529           72 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        72 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      +.-+-...++| ++.+.||.|+|||.|.+.|++..
T Consensus       114 ~~~~~~~~~~g-~~l~~G~pG~GKT~la~ala~~~  147 (321)
T d1w44a_         114 AEFGGHRYASG-MVIVTGKGNSGKTPLVHALGEAL  147 (321)
T ss_dssp             EEETTEEEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred             HHHhhcccCCc-eEEEECCCCccHHHHHHHHHHHh
Confidence            33344556665 55668999999999999999853

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=92.90  E-value=0.02  Score=47.36  Aligned_cols=31  Identities=13%  Similarity=0.159  Sum_probs=26.3

Q ss_pred             eceEEEeCCcEEEEECCCCchHHHHHHHHhC
Q 024529           74 NLNFGIDLDSRIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        74 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      |.=+.+-+|++++|+|+.|+|||||+..+.-
T Consensus        59 D~l~pig~GQr~~Ifg~~g~GKt~l~~~~~~   89 (276)
T d1fx0a3          59 DAMIPVGRGQRELIIGDRQTGKTAVATDTIL   89 (276)
T ss_dssp             TTTSCCBTTCBCBEEESSSSSHHHHHHHHHH
T ss_pred             eccccccCCceEeeccCCCCChHHHHHHHHh
Confidence            4457889999999999999999999876543

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=92.87  E-value=0.027  Score=46.28  Aligned_cols=22  Identities=32%  Similarity=0.493  Sum_probs=19.3

Q ss_pred             EEEEECCCCchHHHHHHHHhCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      -+.|+||.|+|||+++.-++-.
T Consensus        41 n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          41 NPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEECCCCCcHHHHHHHHHHH
Confidence            4689999999999999988854

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=92.68  E-value=0.028  Score=48.19  Aligned_cols=22  Identities=36%  Similarity=0.730  Sum_probs=19.8

Q ss_pred             EEEECCCCchHHHHHHHHhCCC
Q 024529           85 IAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        85 ~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      +.++||+|+|||-|.|.|+.+.
T Consensus        71 iLfiGPTGvGKTElAk~LA~~~   92 (364)
T d1um8a_          71 ILLIGPTGSGKTLMAQTLAKHL   92 (364)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             eeeeCCCCccHHHHHHHHHhhc
Confidence            6688999999999999999765

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=92.60  E-value=0.028  Score=43.87  Aligned_cols=21  Identities=24%  Similarity=0.347  Sum_probs=19.2

Q ss_pred             EEEECCCCchHHHHHHHHhCC
Q 024529           85 IAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        85 ~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      +||+|.-++|||||++.|.+.
T Consensus         6 i~iiGHvd~GKSTL~~~l~~~   26 (196)
T d1d2ea3           6 VGTIGHVDHGKTTLTAAITKI   26 (196)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHHH
Confidence            799999999999999999764

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=92.54  E-value=0.026  Score=47.25  Aligned_cols=20  Identities=25%  Similarity=0.433  Sum_probs=17.6

Q ss_pred             eCCcEEEEECCCCchHHHHH
Q 024529           80 DLDSRIAMVGPNGIGKSTIL   99 (266)
Q Consensus        80 ~~Ge~~~l~G~nGsGKSTLl   99 (266)
                      +.|++..+.|.||+|||||-
T Consensus        12 ~~~~~alfFGLSGTGKTTLs   31 (313)
T d2olra1          12 EKGDVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             TTSCEEEEECSTTSSHHHHH
T ss_pred             CCCCEEEEEccCCCCcccce
Confidence            35889999999999999975

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=92.52  E-value=0.028  Score=47.16  Aligned_cols=23  Identities=35%  Similarity=0.749  Sum_probs=20.3

Q ss_pred             EEEEECCCCchHHHHHHHHhCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .+.++||+|+|||.|.+.|+-.+
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHHHh
Confidence            57789999999999999998764

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=92.31  E-value=0.028  Score=47.66  Aligned_cols=26  Identities=31%  Similarity=0.414  Sum_probs=22.5

Q ss_pred             EEEEECCCCchHHHHHHHHhCCCCCC
Q 024529           84 RIAMVGPNGIGKSTILKLIAGELQPS  109 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~Gl~~p~  109 (266)
                      ++.|=|+-||||||+++.|+-.+...
T Consensus         7 rI~IEG~iGsGKSTl~~~L~~~l~~~   32 (331)
T d1osna_           7 RIYLDGAYGIGKTTAAEEFLHHFAIT   32 (331)
T ss_dssp             EEEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhhc
Confidence            58899999999999999998876543

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=92.24  E-value=0.028  Score=47.23  Aligned_cols=19  Identities=26%  Similarity=0.396  Sum_probs=17.0

Q ss_pred             CCcEEEEECCCCchHHHHH
Q 024529           81 LDSRIAMVGPNGIGKSTIL   99 (266)
Q Consensus        81 ~Ge~~~l~G~nGsGKSTLl   99 (266)
                      .|++..+.|.||+|||||-
T Consensus        13 ~~~valffGLSGTGKTTLs   31 (318)
T d1j3ba1          13 EGDVAVFFGLSGTGKTTLS   31 (318)
T ss_dssp             TCCEEEEEECTTSCHHHHT
T ss_pred             CCCEEEEEccCCCCccccc
Confidence            4789999999999999974

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.02  E-value=0.022  Score=47.27  Aligned_cols=30  Identities=20%  Similarity=0.190  Sum_probs=25.8

Q ss_pred             eceEEEeCCcEEEEECCCCchHHHHHHHHh
Q 024529           74 NLNFGIDLDSRIAMVGPNGIGKSTILKLIA  103 (266)
Q Consensus        74 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~  103 (266)
                      |.=+.+-+|++++|+|+.|+|||||+.-++
T Consensus        60 D~l~pig~GQr~~If~~~g~GKt~ll~~~~   89 (285)
T d2jdia3          60 DSLVPIGRGQRELIIGDRQTGKTSIAIDTI   89 (285)
T ss_dssp             HHHSCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred             ecccCccCCCEEEeecCCCCChHHHHHHHH
Confidence            455788999999999999999999976554

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=91.94  E-value=0.037  Score=43.85  Aligned_cols=19  Identities=26%  Similarity=0.445  Sum_probs=17.5

Q ss_pred             EEEECCCCchHHHHHHHHh
Q 024529           85 IAMVGPNGIGKSTILKLIA  103 (266)
Q Consensus        85 ~~l~G~nGsGKSTLl~~l~  103 (266)
                      ++|+|.-++|||||+..|.
T Consensus         6 i~viGHVd~GKTTL~~~Ll   24 (224)
T d1jnya3           6 LIVIGHVDHGKSTLVGRLL   24 (224)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEecCCCCHHHHHHHHH
Confidence            7999999999999999883

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=91.75  E-value=0.038  Score=46.40  Aligned_cols=19  Identities=26%  Similarity=0.420  Sum_probs=17.5

Q ss_pred             CCcEEEEECCCCchHHHHH
Q 024529           81 LDSRIAMVGPNGIGKSTIL   99 (266)
Q Consensus        81 ~Ge~~~l~G~nGsGKSTLl   99 (266)
                      .|++..+.|-||+|||||-
T Consensus        13 ~gd~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          13 QGDVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             TCCEEEEECCTTSSHHHHH
T ss_pred             CCCEEEEEccCCCCcccce
Confidence            6788899999999999986

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=90.85  E-value=0.054  Score=44.29  Aligned_cols=28  Identities=29%  Similarity=0.432  Sum_probs=24.6

Q ss_pred             EeCCcEEEEECCCCchHHHHHHHHhCCC
Q 024529           79 IDLDSRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        79 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      .++--.+.|.||-++|||||+++|+.++
T Consensus       101 ~~k~n~~~l~G~~~tGKS~f~~~i~~~l  128 (267)
T d1u0ja_         101 FGKRNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             STTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCccEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            3556688999999999999999999886

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=90.84  E-value=0.07  Score=42.31  Aligned_cols=19  Identities=26%  Similarity=0.307  Sum_probs=17.9

Q ss_pred             EEEECCCCchHHHHHHHHh
Q 024529           85 IAMVGPNGIGKSTILKLIA  103 (266)
Q Consensus        85 ~~l~G~nGsGKSTLl~~l~  103 (266)
                      ++++|.-.+|||||+..|+
T Consensus        12 i~viGHVd~GKSTL~~~Ll   30 (222)
T d1zunb3          12 FLTCGNVDDGKSTLIGRLL   30 (222)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            7899999999999999994

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=89.96  E-value=0.1  Score=42.45  Aligned_cols=30  Identities=27%  Similarity=0.450  Sum_probs=23.5

Q ss_pred             CcEEEEECCCCchHHHHHHHHhCCCCCCce
Q 024529           82 DSRIAMVGPNGIGKSTILKLIAGELQPSSG  111 (266)
Q Consensus        82 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G  111 (266)
                      +-.++|+|-.-+|||||+|.|.|-.....|
T Consensus       112 ~~~v~vvG~PNvGKSsliN~L~~~~~~~~~  141 (273)
T d1puja_         112 AIRALIIGIPNVGKSTLINRLAKKNIAKTG  141 (273)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCC---
T ss_pred             ceEEEEEecCccchhhhhhhhhccceEEEC
Confidence            445999999999999999999997654433

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=89.80  E-value=0.1  Score=38.28  Aligned_cols=41  Identities=15%  Similarity=0.104  Sum_probs=29.3

Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHH
Q 024529          191 KKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHL  233 (266)
Q Consensus       191 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~  233 (266)
                      .++++++.||----=|  ...++.+.+...+..|++..=|.++
T Consensus        78 ~~~dvI~IDE~QFf~d--~i~~~~~~~~~~g~~Viv~GLd~Df  118 (139)
T d2b8ta1          78 DETKVIGIDEVQFFDD--RICEVANILAENGFVVIISGLDKNF  118 (139)
T ss_dssp             TTCCEEEECSGGGSCT--HHHHHHHHHHHTTCEEEEECCSBCT
T ss_pred             cCcCEEEechhhhcch--hHHHHHHHHHhcCceEEEEEecccc
Confidence            4788999999843324  3566777777778888888766543

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.78  E-value=0.073  Score=45.12  Aligned_cols=19  Identities=21%  Similarity=0.365  Sum_probs=18.0

Q ss_pred             EEEECCCCchHHHHHHHHh
Q 024529           85 IAMVGPNGIGKSTILKLIA  103 (266)
Q Consensus        85 ~~l~G~nGsGKSTLl~~l~  103 (266)
                      +||+|.-|+|||||+..|.
T Consensus        20 I~iiGhvd~GKTTL~d~Ll   38 (341)
T d1n0ua2          20 MSVIAHVDHGKSTLTDSLV   38 (341)
T ss_dssp             EEEECCGGGTHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHH
Confidence            8999999999999999994

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=89.64  E-value=0.066  Score=44.01  Aligned_cols=16  Identities=25%  Similarity=0.551  Sum_probs=13.4

Q ss_pred             EEEEECCCCchHHHHH
Q 024529           84 RIAMVGPNGIGKSTIL   99 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl   99 (266)
                      .+.|.|+-||||||.|
T Consensus        26 ~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             CEEEEECTTSCHHHHH
T ss_pred             CEEEEecCCccHHHHH
Confidence            4678899999999854

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.59  E-value=0.11  Score=40.36  Aligned_cols=116  Identities=9%  Similarity=0.036  Sum_probs=68.6

Q ss_pred             CcEEEEECCCCchHHHHHHHHhCCCCCCceEEEEcCeeeEEEEeccccCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhc
Q 024529           82 DSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSF  161 (266)
Q Consensus        82 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  161 (266)
                      +--+.+.||+|+||||+.+.++..+.-..-     ....+-++        ...          .....-+.++++.+.+
T Consensus        15 ~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~-----~h~D~~~i--------~~~----------~~~I~Id~IR~i~~~~   71 (198)
T d2gnoa2          15 GISILINGEDLSYPREVSLELPEYVEKFPP-----KASDVLEI--------DPE----------GENIGIDDIRTIKDFL   71 (198)
T ss_dssp             SEEEEEECSSSSHHHHHHHHHHHHHHTSCC-----CTTTEEEE--------CCS----------SSCBCHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHhcccc-----CCCCEEEE--------eCC----------cCCCCHHHHHHHHHHH
Confidence            456889999999999999998864311000     00000000        000          0112345666666655


Q ss_pred             CCCcccccCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC-C-EEEEEecCHHH-HHhhc
Q 024529          162 GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQ-G-GILMVSHDEHL-ISGSV  238 (266)
Q Consensus       162 ~l~~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-tiiivtHd~~~-~~~~~  238 (266)
                      ....         ..              .+.+|+++||. -.|...+..++++.|.+.. . .+|++|++.+- +..+-
T Consensus        72 ~~~~---------~~--------------~~~KviIId~a-d~l~~~aqNaLLK~LEEPp~~t~fiLit~~~~~ll~TI~  127 (198)
T d2gnoa2          72 NYSP---------EL--------------YTRKYVIVHDC-ERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIK  127 (198)
T ss_dssp             TSCC---------SS--------------SSSEEEEETTG-GGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHH
T ss_pred             hhCc---------cc--------------CCCEEEEEeCc-cccchhhhhHHHHHHhCCCCCceeeeccCChhhCHHHHh
Confidence            4321         11              13589999995 4667888889999998763 3 47888888764 33344


Q ss_pred             CEEEEE
Q 024529          239 EELWVV  244 (266)
Q Consensus       239 d~i~~l  244 (266)
                      .|+..+
T Consensus       128 SRC~~i  133 (198)
T d2gnoa2         128 SRVFRV  133 (198)
T ss_dssp             TTSEEE
T ss_pred             cceEEE
Confidence            554444

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=89.45  E-value=0.061  Score=43.76  Aligned_cols=16  Identities=19%  Similarity=0.430  Sum_probs=13.4

Q ss_pred             EEEEECCCCchHHHHH
Q 024529           84 RIAMVGPNGIGKSTIL   99 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl   99 (266)
                      -+.|+|+-||||||.+
T Consensus        16 ~~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEEECCCTTSCHHHHH
T ss_pred             CEEEEeeCCccHHHHH
Confidence            4679999999999754

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=89.25  E-value=0.11  Score=44.19  Aligned_cols=19  Identities=26%  Similarity=0.380  Sum_probs=17.0

Q ss_pred             CcEEEEECCCCchHHHHHH
Q 024529           82 DSRIAMVGPNGIGKSTILK  100 (266)
Q Consensus        82 Ge~~~l~G~nGsGKSTLl~  100 (266)
                      +.++.|.||-|+||||++.
T Consensus       163 ~~~~vI~G~pGTGKTt~i~  181 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVA  181 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHH
Confidence            6799999999999999874

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=89.09  E-value=0.028  Score=39.98  Aligned_cols=21  Identities=14%  Similarity=0.135  Sum_probs=17.5

Q ss_pred             EeCCcEEEEECCCCchHHHHH
Q 024529           79 IDLDSRIAMVGPNGIGKSTIL   99 (266)
Q Consensus        79 i~~Ge~~~l~G~nGsGKSTLl   99 (266)
                      +++|+.+.|.+|.|||||+.+
T Consensus         4 l~~~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           4 LKKGMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             TSTTCEEEECCCTTSSTTTTH
T ss_pred             HHcCCcEEEEcCCCCChhHHH
Confidence            357999999999999999543

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=89.04  E-value=0.083  Score=42.49  Aligned_cols=18  Identities=39%  Similarity=0.449  Sum_probs=17.3

Q ss_pred             EEEECCCCchHHHHHHHH
Q 024529           85 IAMVGPNGIGKSTILKLI  102 (266)
Q Consensus        85 ~~l~G~nGsGKSTLl~~l  102 (266)
                      ++|+|.-++|||||+..|
T Consensus        27 i~iiGHVD~GKSTL~~~L   44 (245)
T d1r5ba3          27 IVFIGHVDAGKSTLGGNI   44 (245)
T ss_dssp             EEEEECGGGTHHHHHHHH
T ss_pred             EEEEeeCCCCHHHHHHHH
Confidence            799999999999999988

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.34  E-value=0.11  Score=41.47  Aligned_cols=20  Identities=25%  Similarity=0.358  Sum_probs=17.7

Q ss_pred             EEEEECCCCchHHHHHHHHh
Q 024529           84 RIAMVGPNGIGKSTILKLIA  103 (266)
Q Consensus        84 ~~~l~G~nGsGKSTLl~~l~  103 (266)
                      -++|+|.-++|||||...|+
T Consensus         8 Ni~iiGHvD~GKsTl~~~ll   27 (239)
T d1f60a3           8 NVVVIGHVDSGKSTTTGHLI   27 (239)
T ss_dssp             EEEEEECTTSCHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            37899999999999998883

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=88.30  E-value=0.086  Score=37.77  Aligned_cols=30  Identities=20%  Similarity=0.061  Sum_probs=20.5

Q ss_pred             HHccCCCEEEEeCCCCCCCHHHHHHHHHHHh
Q 024529          188 ITFKKPHIILLDEPSNHLDLDAVEALIQGLV  218 (266)
Q Consensus       188 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~  218 (266)
                      ..+.+-+++|+||-= .+|..+...+...+.
T Consensus        90 ~~~~~~~~vIiDE~H-~~~~~~~~~~~~~l~  119 (136)
T d1a1va1          90 CSGGAYDIIICDECH-STDATSILGIGTVLD  119 (136)
T ss_dssp             GGGCCCSEEEEETTT-CCSHHHHHHHHHHHH
T ss_pred             hhhhcCCEEEEeccc-ccCHHHHHHHHHHHH
Confidence            345678999999995 468776555444443

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=88.29  E-value=0.09  Score=45.31  Aligned_cols=19  Identities=32%  Similarity=0.667  Sum_probs=16.3

Q ss_pred             EEEECCCCchHHHHHHHHh
Q 024529           85 IAMVGPNGIGKSTILKLIA  103 (266)
Q Consensus        85 ~~l~G~nGsGKSTLl~~l~  103 (266)
                      +.|+||.|+|||+++.-|+
T Consensus        46 ~llvG~~GvGKtaiv~~la   64 (387)
T d1qvra2          46 PVLIGEPGVGKTAIVEGLA   64 (387)
T ss_dssp             CEEEECTTSCHHHHHHHHH
T ss_pred             CeEECCCCCCHHHHHHHHH
Confidence            5789999999999987555

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=88.02  E-value=0.13  Score=41.29  Aligned_cols=28  Identities=21%  Similarity=0.449  Sum_probs=22.5

Q ss_pred             CCcEEEEECCCCchHHHHHHHHhCCCCC
Q 024529           81 LDSRIAMVGPNGIGKSTILKLIAGELQP  108 (266)
Q Consensus        81 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p  108 (266)
                      .+.-+.|.|+.|+|||++.+.|...-..
T Consensus        22 ~~~pvlI~Ge~GtGK~~~A~~ih~~s~~   49 (247)
T d1ny5a2          22 AECPVLITGESGVGKEVVARLIHKLSDR   49 (247)
T ss_dssp             CCSCEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHHhcCC
Confidence            3456889999999999999999764433

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=87.74  E-value=0.062  Score=43.76  Aligned_cols=25  Identities=16%  Similarity=0.174  Sum_probs=19.7

Q ss_pred             EeCCcEEEEECCCCchHHH--HHHHHh
Q 024529           79 IDLDSRIAMVGPNGIGKST--ILKLIA  103 (266)
Q Consensus        79 i~~Ge~~~l~G~nGsGKST--Ll~~l~  103 (266)
                      +.+|+.+.|.+|.|||||+  |..++.
T Consensus         6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~   32 (305)
T d2bmfa2           6 FRKKRLTIMDLHPGAGKTKRYLPAIVR   32 (305)
T ss_dssp             SSTTCEEEECCCTTSSTTTTHHHHHHH
T ss_pred             hhcCCcEEEEECCCCCHHHHHHHHHHH
Confidence            3588999999999999997  335543

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.27  E-value=0.16  Score=36.22  Aligned_cols=24  Identities=4%  Similarity=0.025  Sum_probs=20.4

Q ss_pred             CCcEEEEECCCCchHHHHHHHHhC
Q 024529           81 LDSRIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        81 ~Ge~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      +|=.+.+.|-+|||||||.+.|.-
T Consensus         5 qgf~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           5 QGFSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHH
T ss_pred             cceEEEEeCCCCCCHHHHHHHHHH
Confidence            466788999999999999999843

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.26  E-value=0.2  Score=36.27  Aligned_cols=41  Identities=12%  Similarity=0.121  Sum_probs=28.5

Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHH
Q 024529          190 FKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHL  233 (266)
Q Consensus       190 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tiiivtHd~~~  233 (266)
                      ..++++++.||.---=|   ..++.+.+...+.+|++..=|.++
T Consensus        71 ~~~~d~I~IDEaQFf~d---l~~~~~~~~~~~~~Viv~GLd~Df  111 (133)
T d1xbta1          71 ALGVAVIGIDEGQFFPD---IVEFCEAMANAGKTVIVAALDGTF  111 (133)
T ss_dssp             HHTCSEEEESSGGGCTT---HHHHHHHHHHTTCEEEEECCSBCT
T ss_pred             hcccceEEeehhHHHHH---HHHHHHHHHhcCCcEEEEEecccc
Confidence            35899999999865533   345556666678888888766554

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=84.65  E-value=0.14  Score=39.92  Aligned_cols=28  Identities=18%  Similarity=0.179  Sum_probs=25.0

Q ss_pred             EeCCcEEEEECCCCchHHHHHHHHhCCC
Q 024529           79 IDLDSRIAMVGPNGIGKSTILKLIAGEL  106 (266)
Q Consensus        79 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~  106 (266)
                      +++--.+.+.||.++|||++...|+.++
T Consensus        50 ~PKkn~i~~~GP~~TGKS~f~~sl~~~l   77 (205)
T d1tuea_          50 TPKKNCLVFCGPANTGKSYFGMSFIHFI   77 (205)
T ss_dssp             CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCCceEEEEECCCCccHHHHHHHHHHHh
Confidence            4677799999999999999999998876

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=84.08  E-value=0.28  Score=45.21  Aligned_cols=25  Identities=24%  Similarity=0.356  Sum_probs=21.2

Q ss_pred             eCCcEEEEECCCCchHHHHHHHHhC
Q 024529           80 DLDSRIAMVGPNGIGKSTILKLIAG  104 (266)
Q Consensus        80 ~~Ge~~~l~G~nGsGKSTLl~~l~G  104 (266)
                      ...+.+.|.|.+|||||+-.|.|..
T Consensus        84 ~~~QsIiisGeSGsGKTe~~k~il~  108 (684)
T d1lkxa_          84 QENQCVIISGESGAGKTEASKKIMQ  108 (684)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            4568999999999999998887754

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=83.81  E-value=0.28  Score=45.51  Aligned_cols=26  Identities=19%  Similarity=0.309  Sum_probs=22.0

Q ss_pred             eCCcEEEEECCCCchHHHHHHHHhCC
Q 024529           80 DLDSRIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      ...+.+.|.|.||||||+-.|.|...
T Consensus       123 ~~nQsIiisGeSGaGKTe~~k~il~y  148 (712)
T d1d0xa2         123 RQNQSLLITGESGAGKTENTKKVIQY  148 (712)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCceEEEeCCCCCCHHHHHHHHHHH
Confidence            45789999999999999988887653

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=82.68  E-value=0.28  Score=37.50  Aligned_cols=18  Identities=17%  Similarity=0.372  Sum_probs=14.9

Q ss_pred             CCcEEEEECCCCchHHHH
Q 024529           81 LDSRIAMVGPNGIGKSTI   98 (266)
Q Consensus        81 ~Ge~~~l~G~nGsGKSTL   98 (266)
                      .|.-+.|.+|.|||||+.
T Consensus        39 ~~~~~il~apTGsGKT~~   56 (202)
T d2p6ra3          39 SGKNLLLAMPTAAGKTLL   56 (202)
T ss_dssp             TCSCEEEECSSHHHHHHH
T ss_pred             cCCCEEEEcCCCCchhHH
Confidence            456678999999999985

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=82.57  E-value=0.17  Score=39.76  Aligned_cols=22  Identities=23%  Similarity=0.424  Sum_probs=17.9

Q ss_pred             CCcEEEEECCCCchHHHHHHHH
Q 024529           81 LDSRIAMVGPNGIGKSTILKLI  102 (266)
Q Consensus        81 ~Ge~~~l~G~nGsGKSTLl~~l  102 (266)
                      .|+-+.|++|.|+|||+..-+.
T Consensus        57 ~g~~~~i~apTGsGKT~~~~~~   78 (237)
T d1gkub1          57 RKESFAATAPTGVGKTSFGLAM   78 (237)
T ss_dssp             TTCCEECCCCBTSCSHHHHHHH
T ss_pred             CCCCEEEEecCCChHHHHHHHH
Confidence            6888999999999999764433

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=82.47  E-value=0.33  Score=44.90  Aligned_cols=26  Identities=27%  Similarity=0.298  Sum_probs=21.4

Q ss_pred             eCCcEEEEECCCCchHHHHHHHHhCC
Q 024529           80 DLDSRIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      ...+.+.|.|.+|||||+-.|.|...
T Consensus        89 ~~~Q~IiisGeSGaGKTe~~k~il~y  114 (710)
T d1br2a2          89 REDQSILCTGESGAGKTENTKKVIQY  114 (710)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence            35689999999999999987777543

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=80.87  E-value=0.38  Score=45.13  Aligned_cols=26  Identities=23%  Similarity=0.309  Sum_probs=20.7

Q ss_pred             eCCcEEEEECCCCchHHHHHHHHhCC
Q 024529           80 DLDSRIAMVGPNGIGKSTILKLIAGE  105 (266)
Q Consensus        80 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl  105 (266)
                      ...+.+.|.|.||||||+-.|.|...
T Consensus       121 ~~~QsIiisGeSGaGKTe~~K~il~y  146 (794)
T d2mysa2         121 RENQSILITGESGAGKTVNTKRVIQY  146 (794)
T ss_dssp             TCCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            45678999999999999877766543