Citrus Sinensis ID: 024531

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260------
Protein Sequence
MVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKKNWLIIFWQLLVSLVLGLFKRKRVKAE
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHccccccEEEEEEccccccccccccccccccccccEEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHHHccccEEEEEEccHHcccccccccccccccccEEEEEEEEEEccccccccccccccHHHHHHHHHHHHHHccHHHHccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHccccccHHHcccHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mvlgkekkemtGLAIGVSSMKAGEHALLHVGwelgygkegsfsfpnvspmaDLVYEVVLIGfdetkegkarsdMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMalavknpcHLNMAACLLKLKRYEEAIGQCslvlgedenNVKALFRRGKARAELGQTDAAREDFLkagkfapedKSIARELRLLAEHEKAVYKKQKEIYkgifgprpepkqkknWLIIFWQLLVSLVLGLFkrkrvkae
Flexible Loop (DISEMBL)
mvlgkekkemtglAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDetkegkarsdmtveerigaadrrkmdgnALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCslvlgedenNVKALFRRGKaraelgqtdaAREDFLkagkfapedkSIARELRLLAEHEKavykkqkeiykgifgprpepkqkKNWLIIFWQLLVSLVlglfkrkrvkae
Low Complexity Region (SEG)
MVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKKNWLIIFWQLLVSLVLGLFKRKRVKAE
Disordered region (IsUnstruct)
*************AIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD***************************************MQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRR******************************ARELRLLAEHEKAVYKKQKEIYKGIFGP******KKNWLIIFWQLLVSLVLGLFK*******
Disordered Region (DISOPRED)
MVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQL**KYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAE*********************************WQLLVSLVLGLF*RK*****
Disordered Region (DISEMBL)
*********MTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKKNWLIIFWQLLVSLVLGLFKRKRVKAE
Disordered Region (DISPRO)
*****EKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKKNWLIIFWQLLVSLVLGLFKRKR****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKKNWLIIFWQLLVSLVLGLFKRKRVKAE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	266	2.2.26 [Sep-21-2011]
Q9LDC0	365	Peptidyl-prolyl cis-trans	yes	no	1.0	0.728	0.762	1e-118
Q38931	551	Peptidyl-prolyl cis-trans	no	no	0.827	0.399	0.367	3e-26
Q9FJL3	578	Peptidyl-prolyl cis-trans	no	no	0.842	0.387	0.358	2e-25
Q43207	559	70 kDa peptidyl-prolyl is	N/A	no	0.834	0.397	0.361	2e-24
P30416	458	Peptidyl-prolyl cis-trans	yes	no	0.800	0.465	0.305	2e-22
Q9QVC8	458	Peptidyl-prolyl cis-trans	yes	no	0.800	0.465	0.305	3e-22
Q9TRY0	459	Peptidyl-prolyl cis-trans	yes	no	0.800	0.464	0.305	5e-22
P27124	458	Peptidyl-prolyl cis-trans	yes	no	0.800	0.465	0.310	3e-21
Q02790	459	Peptidyl-prolyl cis-trans	yes	no	0.800	0.464	0.296	8e-21
Q3B7U9	403	Peptidyl-prolyl cis-trans	no	no	0.819	0.540	0.301	3e-19

>sp|Q9LDC0|FKB42_ARATH Peptidyl-prolyl cis-trans isomerase FKBP42 OS=Arabidopsis thaliana GN=FKBP42 PE=1 SV=1

 Score =  424 bits (1089), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 205/269 (76%), Positives = 236/269 (87%), Gaps = 3/269 (1%)

Query: 1   MVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 60
           +VLGKEKKE+ GLAIGV+SMK+GE AL+HVGWEL YGKEG+FSFPNV PMADL+YEV +I
Sbjct: 97  LVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVI 156

Query: 61  GFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQ 120
           GFDETKEGKARSDMTVEERIGAADRRKMDGN+LFKEEKLEEAMQQYEMAIAYMGDDFMFQ
Sbjct: 157 GFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQ 216

Query: 121 LFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAE 180
           L+GKY+DMALAVKNPCHLN+AACL+KLKRY+EAIG C++VL E+E N KALFRRGKA+AE
Sbjct: 217 LYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAE 276

Query: 181 LGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKK 240
           LGQ D+AR+DF KA K+AP+DK+I RELR LAE EKA+Y+KQKE+YKGIF  + E   K 
Sbjct: 277 LGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGAKS 336

Query: 241 N---WLIIFWQLLVSLVLGLFKRKRVKAE 266
               WLI+ WQ  VSL   +F+R RVKA+
Sbjct: 337 KSLFWLIVLWQWFVSLFSRIFRRHRVKAD 365

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). Modulates the uptake of MRP substrates into the vacuole; reduces metolachlor-GS (MOC-GS) and enhances 17-beta-estradiol 17-(beta-D-glucuronide) (E(2)17betaG) uptake. Regulates cell elongation and orientation. Functions as a positive regulator of PGP1-mediated auxin transport. Confers drug modulation of PGP1 efflux activity as interaction with NPA or flavonol quercetin prevents its physical and functional interaction with PGP1. Required for the proper localization of auxin-related ABCB transporters. Plays a role in brassinosteroid (BR) signaling pathway.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8

>sp|Q38931|FKB62_ARATH Peptidyl-prolyl cis-trans isomerase FKBP62 OS=Arabidopsis thaliana GN=FKBP62 PE=1 SV=2

 Score =  119 bits (297), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/226 (36%), Positives = 122/226 (53%), Gaps = 6/226 (2%)

Query: 6   EKKEMTGLAIGVSSMKAGEHALLHVGWELGYG-KEGSFSFPNVSPMADLVYEVVLIGFDE 64
           E++ + GL   V  MK GE AL+ +  E  +G  E       V P + + YEV L+ FD+
Sbjct: 325 EEQVVDGLDRAVMKMKKGEVALVTIDPEYAFGSNESQQELAVVPPNSTVTYEVDLLTFDK 384

Query: 65  TKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGK 124
            +E     DM  EE+I AA ++K +GN+ FK  K   A ++YE A+ ++  D  F    +
Sbjct: 385 ERES---WDMNTEEKIEAASKKKEEGNSKFKGGKYSLASKRYEKAVKFIEYDTSFS--EE 439

Query: 125 YRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQT 184
            +  A A+K  C+LN AAC LKLK Y++A   C+ VL  +  NVKAL+RR +A  EL   
Sbjct: 440 EKKQAKALKVACNLNDAACKLKLKDYKQAEKLCTKVLELESTNVKALYRRAQAYMELSDL 499

Query: 185 DAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIF 230
           D A  D  KA +  P ++ +  E + L E  K   KK+ + Y  +F
Sbjct: 500 DLAEFDVKKALEIDPNNREVKLEQKRLKEKMKEFNKKEAKFYGNMF 545

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). Co-chaperone that positively modulates thermotolerance by interacting with HSP90.1 and increasing the HSFA2-mediated accumulation of chaperones of the small-HSPs family.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9FJL3|FKB65_ARATH Peptidyl-prolyl cis-trans isomerase FKBP65 OS=Arabidopsis thaliana GN=FKBP65 PE=1 SV=1

 Score =  116 bits (290), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/234 (35%), Positives = 119/234 (50%), Gaps = 10/234 (4%)

Query: 6   EKKEMTGLAIGVSSMKAGEHALLHVGWELGYGK-EGSFSFPNVSPMADLVYEVVLIGFDE 64
           E++ + GL   V  MK GE AL+ +  E  +G  E       + P + + YEV L+ F +
Sbjct: 335 EEQVIEGLEKAVMGMKKGEVALITISPEYAFGSSESKQELAVIPPNSTVYYEVELVSFIK 394

Query: 65  TKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMF--QLF 122
            KE     DM  +ERI AA ++K +GN LFK  K   A ++YE  + Y+  D  F  +  
Sbjct: 395 EKES---WDMNTQERIEAAGKKKEEGNVLFKAGKYARASKRYERGVKYIEYDSTFDEEEK 451

Query: 123 GKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELG 182
            K +D+ +A    C+LN AAC LKLK Y+EA    + VL  D  NVKA++RR  A  E  
Sbjct: 452 KKSKDLKIA----CNLNDAACKLKLKDYKEAAKLSTKVLEMDSRNVKAMYRRAHAYLETA 507

Query: 183 QTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEP 236
             D A  D  KA +  P++K +  E + L E  K   KK  + Y  +     EP
Sbjct: 508 DLDLAELDIKKALEIDPDNKEVKIEYKKLKEKVKEYNKKDAKFYSNMLSKMLEP 561

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Co-chaperone that negatively modulates thermotolerance by interacting with FKBP62 and decreasing the HSFA2-mediated accumulation of chaperones of the small-HSPs family. Plays a positive role in tolerance to intracellular acid stress by maintaining the pH homeostasis.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q43207|FKB70_WHEAT 70 kDa peptidyl-prolyl isomerase OS=Triticum aestivum GN=FKBP70 PE=1 SV=1

 Score =  113 bits (282), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/227 (36%), Positives = 118/227 (51%), Gaps = 5/227 (2%)

Query: 10  MTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGK 69
           + GL   V +MK GE AL+ +  E  YG   S     V P + ++YEV L+ F + KE  
Sbjct: 331 IEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSFVKDKES- 389

Query: 70  ARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMA 129
              D+   E+I AA  +K +GNALFK  K   A ++YE A  ++  D  F    K +   
Sbjct: 390 --WDLNNSEKIEAAGTKKEEGNALFKSGKYARASKRYEKAAKFIEYDTSFSEDEKKQSKQ 447

Query: 130 LAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAARE 189
           L +   C+LN AAC LKLK Y++A   C+ VL  D  NVKAL+RR +A  +L   + A  
Sbjct: 448 LKIT--CNLNNAACKLKLKDYKQAEKLCTKVLELDSRNVKALYRRAQAYTQLADLELAEV 505

Query: 190 DFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEP 236
           D  KA +  PE++ +    + L E  K + KK  + Y  +F    +P
Sbjct: 506 DIKKALEIDPENRDVKLTYKTLKEKIKEINKKDAKFYSNMFSKMTKP 552

PPIases accelerate the folding of proteins during protein synthesis.

Triticum aestivum (taxid: 4565)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P30416|FKBP4_MOUSE Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Mus musculus GN=Fkbp4 PE=1 SV=5

 Score =  106 bits (264), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 116/219 (52%), Gaps = 6/219 (2%)

Query: 12  GLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKAR 71
           GL   +  M+ GEH+++++     +G  G   F  + P A+L YEV L  F++ KE    
Sbjct: 203 GLEEAIQRMEKGEHSIVYLKPSYAFGSVGKERF-QIPPHAELRYEVRLKSFEKAKES--- 258

Query: 72  SDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALA 131
            +M+  E++  ++  K  G A FKE K ++A+ QY+  ++++  ++     G+      A
Sbjct: 259 WEMSSAEKLEQSNIVKERGTAYFKEGKYKQALLQYKKIVSWL--EYESSFSGEEMQKVHA 316

Query: 132 VKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDF 191
           ++   HLN+A C LKL+ +  AI  C+  L  D NN K LFRRG+A   +   D AR DF
Sbjct: 317 LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFDLARADF 376

Query: 192 LKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIF 230
            K  +  P +K+   +L +  +  +    ++K++Y  +F
Sbjct: 377 QKVLQLYPSNKAAKTQLAVCQQRTRRQLAREKKLYANMF 415

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90) (By similarity). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9QVC8|FKBP4_RAT Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Rattus norvegicus GN=Fkbp4 PE=1 SV=3

 Score =  105 bits (263), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 115/219 (52%), Gaps = 6/219 (2%)

Query: 12  GLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKAR 71
           GL   +  M+ GEH+++++     +G  G   F  + P A+L YEV L  F++    KA 
Sbjct: 203 GLEEAIQRMEKGEHSIVYLKPSYAFGSVGKERF-QIPPHAELRYEVHLKSFEK---AKAS 258

Query: 72  SDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALA 131
            +M  EE++  ++  K  G   FKE K ++A+ QY+  ++++  ++     G+      A
Sbjct: 259 WEMNSEEKLEQSNIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSGEEMQKVHA 316

Query: 132 VKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDF 191
           ++   HLN+A C LKL+ +  AI  C+  L  D NN K LFRRG+A   +   D AR DF
Sbjct: 317 LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFDLARADF 376

Query: 192 LKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIF 230
            K  +  P +K+   +L +  +  +    ++K++Y  +F
Sbjct: 377 QKVLQLYPSNKAAKTQLAVCQQRTRRQLAREKKLYANMF 415

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90) (By similarity). Plays a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly. The PPIase activity controls neuronal growth cones via regulation of TRPC1 channel opening.

Rattus norvegicus (taxid: 10116)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9TRY0|FKBP4_BOVIN Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Bos taurus GN=FKBP4 PE=1 SV=4

 Score =  105 bits (261), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 117/219 (53%), Gaps = 6/219 (2%)

Query: 12  GLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKAR 71
           GL   +  M+ GEH+++++     +G  G   F  + P A+L YE+ L  F++ KE    
Sbjct: 203 GLEKAIQRMEKGEHSIVYLKPRYAFGSAGKEKF-QIPPNAELKYEIHLKSFEKAKES--- 258

Query: 72  SDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALA 131
            +M+ EE++  +   K  G   FKE K ++A+ QY+  ++++  ++      +  + A A
Sbjct: 259 WEMSSEEKLEQSTIVKERGTVYFKEGKYKQAVLQYKKIVSWL--EYESSFSDEDAEKAQA 316

Query: 132 VKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDF 191
           ++   HLN+A C LKL+ +  AI  C+  L  D NN K LFRRG+A   +   D AR DF
Sbjct: 317 LRLASHLNLAMCHLKLQAFSAAIENCNKALELDSNNEKGLFRRGEAHLAVNDFDLARADF 376

Query: 192 LKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIF 230
            K  +  P +K+   +L +  +  +   +K+K++Y  +F
Sbjct: 377 QKVLQLYPSNKAAKAQLVVCQQRIRKQLEKEKKLYANMF 415

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90) (By similarity). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Bos taurus (taxid: 9913)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P27124|FKBP4_RABIT Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Oryctolagus cuniculus GN=FKBP4 PE=1 SV=3

 Score =  102 bits (254), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 115/219 (52%), Gaps = 6/219 (2%)

Query: 12  GLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKAR 71
           GL   +  M+ GEH++L++     +G  G   F  + P A+L YEV L  F++ KE    
Sbjct: 203 GLEKAIQRMEKGEHSILYLKPSYAFGNAGKEKF-QIPPYAELKYEVHLKSFEKAKES--- 258

Query: 72  SDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALA 131
            +M+ EE++  +   K  G   FKE K ++A+ QY+  ++++  +  F      +  AL 
Sbjct: 259 WEMSSEEKLEQSAIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSSEEVQKAQALR 318

Query: 132 VKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDF 191
           + +  HLN+A C LKL+ +  A+  C+  L  D NN K LFRRG+A   +   D AR DF
Sbjct: 319 LAS--HLNLAMCHLKLQAFSAAVESCNKALELDSNNEKGLFRRGEAHLAVNDFDLARADF 376

Query: 192 LKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIF 230
            K  +  P +K+   +L +  +  +    ++K++Y  +F
Sbjct: 377 QKVLQLYPSNKAAKAQLAVCQQRIRKQIAREKKLYANMF 415

Immunophilin protein with PPIase and co-chaperone activities. Component of unligated steroid receptors heterocomplexes thought interaction with heat-shock protein 90 (HSP90) (By similarity). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments. The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Oryctolagus cuniculus (taxid: 9986)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q02790|FKBP4_HUMAN Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Homo sapiens GN=FKBP4 PE=1 SV=3

 Score =  100 bits (250), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 114/219 (52%), Gaps = 6/219 (2%)

Query: 12  GLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKAR 71
           GL   +  M+ GEH+++++     +G  G   F  + P A+L YE+ L  F++ KE    
Sbjct: 203 GLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKF-QIPPNAELKYELHLKSFEKAKES--- 258

Query: 72  SDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALA 131
            +M  EE++  +   K  G   FKE K ++A+ QY+  ++++  ++      +    A A
Sbjct: 259 WEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQA 316

Query: 132 VKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDF 191
           ++   HLN+A C LKL+ +  AI  C+  L  D NN K LFRRG+A   +   + AR DF
Sbjct: 317 LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADF 376

Query: 192 LKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIF 230
            K  +  P +K+   +L +  +  +    ++K++Y  +F
Sbjct: 377 QKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 415

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening. Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q3B7U9|FKBP8_RAT Peptidyl-prolyl cis-trans isomerase FKBP8 OS=Rattus norvegicus GN=Fkbp8 PE=2 SV=1

 Score = 95.5 bits (236), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 107/222 (48%), Gaps = 4/222 (1%)

Query: 10  MTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGK 69
           +  L + V  M  GE A++    +  YG +GS S P + P A L  EV L      ++G 
Sbjct: 143 IQALDLSVPLMHVGETAMVTADSKYCYGPQGSRS-PYIPPHAALCLEVTL---KTAEDGP 198

Query: 70  ARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMA 129
               ++ +ER+  A+R++  GNA ++      A   Y++AI  +  +    +  +  +  
Sbjct: 199 DLEMLSGQERVALANRKRECGNAHYQRADFVLAANSYDLAIKAITSNAKVDMTCEEEEEL 258

Query: 130 LAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAARE 189
           L +K  C  N+AA  LKL  Y  A+  CS VL    +N+KALFR+GK  A+ G+   A  
Sbjct: 259 LQLKVKCLNNLAASQLKLDHYRAALRSCSQVLEHQPDNIKALFRKGKVLAQQGEYSEAIP 318

Query: 190 DFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFG 231
               A K  P +K+I  EL  L +   A    +  +Y+ + G
Sbjct: 319 ILRAALKLEPSNKTIHAELSKLVKKRAAQRSTETALYRKMLG 360

Constitutively inactive PPiase, which becomes active when bound to calmodulin and calcium. Seems to act as a chaperone for BCL2, targets it to the mitochondria and modulates its phosphorylation state. The BCL2/FKBP8/calmodulin/calcium complex probably interferes with the binding of BCL2 to its targets. The active form of FKBP8 may therefore play a role in the regulation of apoptosis.

Rattus norvegicus (taxid: 10116)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	266
356542700	370	PREDICTED: 42 kDa peptidyl-prolyl isomer	1.0	0.718	0.844	1e-130
356531669	370	PREDICTED: 42 kDa peptidyl-prolyl isomer	1.0	0.718	0.840	1e-129
255645857	370	unknown [Glycine max]	1.0	0.718	0.837	1e-129
225450073	365	PREDICTED: 42 kDa peptidyl-prolyl isomer	1.0	0.728	0.857	1e-128
357470965	394	42 kDa peptidyl-prolyl isomerase [Medica	0.984	0.664	0.827	1e-126
357470971	372	42 kDa peptidyl-prolyl isomerase [Medica	0.984	0.704	0.827	1e-126
357470967	389	42 kDa peptidyl-prolyl isomerase [Medica	0.984	0.673	0.827	1e-126
357470963	384	42 kDa peptidyl-prolyl isomerase [Medica	0.984	0.682	0.827	1e-126
449464000	369	PREDICTED: peptidyl-prolyl cis-trans iso	0.981	0.707	0.830	1e-125
449516701	369	PREDICTED: peptidyl-prolyl cis-trans iso	0.981	0.707	0.830	1e-125

>gi|356542700|ref|XP_003539804.1| PREDICTED: 42 kDa peptidyl-prolyl isomerase-like [Glycine max]

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 228/270 (84%), Positives = 249/270 (92%), Gaps = 4/270 (1%)

Query: 1   MVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 60
           MVLGKEKKEMTGL IGV+SMKAGE AL+ VGWELGYG+EGSFSFPNV P ADLVYEV LI
Sbjct: 101 MVLGKEKKEMTGLGIGVASMKAGERALVRVGWELGYGEEGSFSFPNVPPKADLVYEVELI 160

Query: 61  GFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQ 120
           GFDETKEGKARSDMTVEERIGAADRRKMDGNAL++EEKLEEAMQQYEMAIAYMGDDFMFQ
Sbjct: 161 GFDETKEGKARSDMTVEERIGAADRRKMDGNALYQEEKLEEAMQQYEMAIAYMGDDFMFQ 220

Query: 121 LFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAE 180
           LFGKYRDMALAVKNPCHLNMAACL+KL RYEEAIGQCS+VLGEDENNVKALFRRGKARA 
Sbjct: 221 LFGKYRDMALAVKNPCHLNMAACLIKLNRYEEAIGQCSIVLGEDENNVKALFRRGKARAA 280

Query: 181 LGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQK- 239
           LGQTD AREDFLKA K+AP+DK+IA+ELRLLAEH+KAVY+KQKEIYKGIFGPRP+P  K 
Sbjct: 281 LGQTDTAREDFLKASKYAPQDKAIAKELRLLAEHDKAVYQKQKEIYKGIFGPRPQPVPKP 340

Query: 240 KNWLIIFWQLLVSLVLG---LFKRKRVKAE 266
           +NWLI+ WQ L+S+  G   LFKR+R K++
Sbjct: 341 RNWLILIWQWLLSVFYGLVTLFKRQRHKSD 370

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531669|ref|XP_003534399.1| PREDICTED: 42 kDa peptidyl-prolyl isomerase-like [Glycine max]

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 227/270 (84%), Positives = 250/270 (92%), Gaps = 4/270 (1%)

Query: 1   MVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 60
           MVLGKEKKEMTGL++GV+SMKAGE AL+ VGWELGYG+EGSFSFPNV P ADLVYEV LI
Sbjct: 101 MVLGKEKKEMTGLSVGVASMKAGERALVRVGWELGYGEEGSFSFPNVPPKADLVYEVELI 160

Query: 61  GFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQ 120
           GFDETKEGKARSDMTVEERIGAADRRKMDGNAL++EEKLEEAMQQYEMAIAYMGDDFMFQ
Sbjct: 161 GFDETKEGKARSDMTVEERIGAADRRKMDGNALYQEEKLEEAMQQYEMAIAYMGDDFMFQ 220

Query: 121 LFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAE 180
           LFGKYRDMALAVKNPCHLNMAACL+KL RYEEAIGQC+ VLGEDENNVKALFRRGKARA 
Sbjct: 221 LFGKYRDMALAVKNPCHLNMAACLIKLNRYEEAIGQCNTVLGEDENNVKALFRRGKARAT 280

Query: 181 LGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQK- 239
           LGQTDAAREDFLKA K+AP+DK+IA+ELRLLAEH+KAVY+KQKEIYKGIFGPRP+P  K 
Sbjct: 281 LGQTDAAREDFLKATKYAPQDKAIAKELRLLAEHDKAVYQKQKEIYKGIFGPRPQPVPKP 340

Query: 240 KNWLIIFWQLLVSLVLG---LFKRKRVKAE 266
           +NWLI+ WQ L+S+  G   LFKR+R K++
Sbjct: 341 RNWLILIWQWLLSVFYGLVTLFKRERHKSD 370

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255645857|gb|ACU23419.1| unknown [Glycine max]

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 226/270 (83%), Positives = 249/270 (92%), Gaps = 4/270 (1%)

Query: 1   MVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 60
           MVLGKEKKEMTGL++GV+SMKAGE AL+ VGWELGYG+EGSFSFPNV P ADLVYEV LI
Sbjct: 101 MVLGKEKKEMTGLSVGVASMKAGERALVRVGWELGYGEEGSFSFPNVPPKADLVYEVELI 160

Query: 61  GFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQ 120
           GFDETKEGKARSDMTVEERIGAADRRKMDGNAL++EEKLEEAMQQYEMAIAYMGDDFMFQ
Sbjct: 161 GFDETKEGKARSDMTVEERIGAADRRKMDGNALYQEEKLEEAMQQYEMAIAYMGDDFMFQ 220

Query: 121 LFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAE 180
           LFGKYRDMALAVKNPCHLNMAACL+KL RYEEAIGQC+ VLGEDENNVKALFRRGKARA 
Sbjct: 221 LFGKYRDMALAVKNPCHLNMAACLIKLNRYEEAIGQCNTVLGEDENNVKALFRRGKARAT 280

Query: 181 LGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQK- 239
            GQTDAAREDFLKA K+AP+DK+IA+ELRLLAEH+KAVY+KQKEIYKGIFGPRP+P  K 
Sbjct: 281 FGQTDAAREDFLKATKYAPQDKAIAKELRLLAEHDKAVYQKQKEIYKGIFGPRPQPVPKP 340

Query: 240 KNWLIIFWQLLVSLVLG---LFKRKRVKAE 266
           +NWLI+ WQ L+S+  G   LFKR+R K++
Sbjct: 341 RNWLILIWQWLLSVFYGLVTLFKRERHKSD 370

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450073|ref|XP_002277668.1| PREDICTED: 42 kDa peptidyl-prolyl isomerase isoform 2 [Vitis vinifera] gi|225450075|ref|XP_002277645.1| PREDICTED: 42 kDa peptidyl-prolyl isomerase isoform 1 [Vitis vinifera] gi|297736282|emb|CBI24920.3| unnamed protein product [Vitis vinifera]

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 229/267 (85%), Positives = 247/267 (92%), Gaps = 1/267 (0%)

Query: 1   MVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 60
           +V+GKEKKEMTGLAIGVS+MK+GE ALLHVGWELGYGKEGSFSFPNV PMAD++YEV LI
Sbjct: 99  IVIGKEKKEMTGLAIGVSNMKSGERALLHVGWELGYGKEGSFSFPNVPPMADILYEVELI 158

Query: 61  GFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQ 120
           GFDETKEGKAR DMTVEERIGAADRRKMDGN  FKEEKLEEAMQQYEMAIAYMGDDFMFQ
Sbjct: 159 GFDETKEGKARGDMTVEERIGAADRRKMDGNVYFKEEKLEEAMQQYEMAIAYMGDDFMFQ 218

Query: 121 LFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAE 180
           LFGKYRDMALAVKNPCHLNMAACL+KLKRYEEAIGQCS+VL EDENNVKALFRRGKARAE
Sbjct: 219 LFGKYRDMALAVKNPCHLNMAACLIKLKRYEEAIGQCSIVLAEDENNVKALFRRGKARAE 278

Query: 181 LGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFG-PRPEPKQK 239
           LGQTDAAREDF KA K+APEDK+I+RELRLLAEH+KAVY+KQKEIYKGIFG P     +K
Sbjct: 279 LGQTDAAREDFSKARKYAPEDKAISRELRLLAEHDKAVYQKQKEIYKGIFGPPPEPKPKK 338

Query: 240 KNWLIIFWQLLVSLVLGLFKRKRVKAE 266
            NWLI+FWQ LVSL+  LFKR+R KA+
Sbjct: 339 TNWLILFWQWLVSLLYSLFKRERHKAD 365

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357470965|ref|XP_003605767.1| 42 kDa peptidyl-prolyl isomerase [Medicago truncatula] gi|355506822|gb|AES87964.1| 42 kDa peptidyl-prolyl isomerase [Medicago truncatula]

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 220/266 (82%), Positives = 241/266 (90%), Gaps = 4/266 (1%)

Query: 1   MVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 60
           MV+GKEKKEMTGL IGV+SMKAGE ALL V WELGYG+EGSFSFPNV PMADLVYEV LI
Sbjct: 124 MVIGKEKKEMTGLGIGVASMKAGERALLRVSWELGYGQEGSFSFPNVPPMADLVYEVELI 183

Query: 61  GFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQ 120
           GFDETK+GKARSDMTVEERIGAADRRKMDGN LF+E KLEEAMQQYEMAIAYMGDDFMFQ
Sbjct: 184 GFDETKDGKARSDMTVEERIGAADRRKMDGNVLFQENKLEEAMQQYEMAIAYMGDDFMFQ 243

Query: 121 LFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAE 180
           LFGKYRDMALAVKNPCHLN AACL+KL RYEEAIGQCS+VL EDE+N+KALFRRGKARA 
Sbjct: 244 LFGKYRDMALAVKNPCHLNTAACLIKLNRYEEAIGQCSIVLSEDESNLKALFRRGKARAA 303

Query: 181 LGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEP-KQK 239
           LGQTDAAREDFLKA K APEDK+IAREL+LLAEH+KA+Y+KQKEIYKGIFGPRP+P  QK
Sbjct: 304 LGQTDAAREDFLKARKHAPEDKAIARELKLLAEHDKAIYQKQKEIYKGIFGPRPQPVPQK 363

Query: 240 KNWLIIFWQLLVSL---VLGLFKRKR 262
           +NW I+ WQ LVS+    + LF R++
Sbjct: 364 RNWFIVVWQWLVSVFHNFITLFNREK 389

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357470971|ref|XP_003605770.1| 42 kDa peptidyl-prolyl isomerase [Medicago truncatula] gi|355506825|gb|AES87967.1| 42 kDa peptidyl-prolyl isomerase [Medicago truncatula] gi|388520749|gb|AFK48436.1| unknown [Medicago truncatula]

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 220/266 (82%), Positives = 241/266 (90%), Gaps = 4/266 (1%)

Query: 1   MVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 60
           MV+GKEKKEMTGL IGV+SMKAGE ALL V WELGYG+EGSFSFPNV PMADLVYEV LI
Sbjct: 102 MVIGKEKKEMTGLGIGVASMKAGERALLRVSWELGYGQEGSFSFPNVPPMADLVYEVELI 161

Query: 61  GFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQ 120
           GFDETK+GKARSDMTVEERIGAADRRKMDGN LF+E KLEEAMQQYEMAIAYMGDDFMFQ
Sbjct: 162 GFDETKDGKARSDMTVEERIGAADRRKMDGNVLFQENKLEEAMQQYEMAIAYMGDDFMFQ 221

Query: 121 LFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAE 180
           LFGKYRDMALAVKNPCHLN AACL+KL RYEEAIGQCS+VL EDE+N+KALFRRGKARA 
Sbjct: 222 LFGKYRDMALAVKNPCHLNTAACLIKLNRYEEAIGQCSIVLSEDESNLKALFRRGKARAA 281

Query: 181 LGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEP-KQK 239
           LGQTDAAREDFLKA K APEDK+IAREL+LLAEH+KA+Y+KQKEIYKGIFGPRP+P  QK
Sbjct: 282 LGQTDAAREDFLKARKHAPEDKAIARELKLLAEHDKAIYQKQKEIYKGIFGPRPQPVPQK 341

Query: 240 KNWLIIFWQLLVSL---VLGLFKRKR 262
           +NW I+ WQ LVS+    + LF R++
Sbjct: 342 RNWFIVVWQWLVSVFHNFITLFNREK 367

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357470967|ref|XP_003605768.1| 42 kDa peptidyl-prolyl isomerase [Medicago truncatula] gi|355506823|gb|AES87965.1| 42 kDa peptidyl-prolyl isomerase [Medicago truncatula]

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 220/266 (82%), Positives = 241/266 (90%), Gaps = 4/266 (1%)

Query: 1   MVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 60
           MV+GKEKKEMTGL IGV+SMKAGE ALL V WELGYG+EGSFSFPNV PMADLVYEV LI
Sbjct: 119 MVIGKEKKEMTGLGIGVASMKAGERALLRVSWELGYGQEGSFSFPNVPPMADLVYEVELI 178

Query: 61  GFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQ 120
           GFDETK+GKARSDMTVEERIGAADRRKMDGN LF+E KLEEAMQQYEMAIAYMGDDFMFQ
Sbjct: 179 GFDETKDGKARSDMTVEERIGAADRRKMDGNVLFQENKLEEAMQQYEMAIAYMGDDFMFQ 238

Query: 121 LFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAE 180
           LFGKYRDMALAVKNPCHLN AACL+KL RYEEAIGQCS+VL EDE+N+KALFRRGKARA 
Sbjct: 239 LFGKYRDMALAVKNPCHLNTAACLIKLNRYEEAIGQCSIVLSEDESNLKALFRRGKARAA 298

Query: 181 LGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEP-KQK 239
           LGQTDAAREDFLKA K APEDK+IAREL+LLAEH+KA+Y+KQKEIYKGIFGPRP+P  QK
Sbjct: 299 LGQTDAAREDFLKARKHAPEDKAIARELKLLAEHDKAIYQKQKEIYKGIFGPRPQPVPQK 358

Query: 240 KNWLIIFWQLLVSL---VLGLFKRKR 262
           +NW I+ WQ LVS+    + LF R++
Sbjct: 359 RNWFIVVWQWLVSVFHNFITLFNREK 384

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357470963|ref|XP_003605766.1| 42 kDa peptidyl-prolyl isomerase [Medicago truncatula] gi|355506821|gb|AES87963.1| 42 kDa peptidyl-prolyl isomerase [Medicago truncatula]

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 220/266 (82%), Positives = 241/266 (90%), Gaps = 4/266 (1%)

Query: 1   MVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 60
           MV+GKEKKEMTGL IGV+SMKAGE ALL V WELGYG+EGSFSFPNV PMADLVYEV LI
Sbjct: 114 MVIGKEKKEMTGLGIGVASMKAGERALLRVSWELGYGQEGSFSFPNVPPMADLVYEVELI 173

Query: 61  GFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQ 120
           GFDETK+GKARSDMTVEERIGAADRRKMDGN LF+E KLEEAMQQYEMAIAYMGDDFMFQ
Sbjct: 174 GFDETKDGKARSDMTVEERIGAADRRKMDGNVLFQENKLEEAMQQYEMAIAYMGDDFMFQ 233

Query: 121 LFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAE 180
           LFGKYRDMALAVKNPCHLN AACL+KL RYEEAIGQCS+VL EDE+N+KALFRRGKARA 
Sbjct: 234 LFGKYRDMALAVKNPCHLNTAACLIKLNRYEEAIGQCSIVLSEDESNLKALFRRGKARAA 293

Query: 181 LGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEP-KQK 239
           LGQTDAAREDFLKA K APEDK+IAREL+LLAEH+KA+Y+KQKEIYKGIFGPRP+P  QK
Sbjct: 294 LGQTDAAREDFLKARKHAPEDKAIARELKLLAEHDKAIYQKQKEIYKGIFGPRPQPVPQK 353

Query: 240 KNWLIIFWQLLVSL---VLGLFKRKR 262
           +NW I+ WQ LVS+    + LF R++
Sbjct: 354 RNWFIVVWQWLVSVFHNFITLFNREK 379

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464000|ref|XP_004149717.1| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP42-like [Cucumis sativus]

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 220/265 (83%), Positives = 240/265 (90%), Gaps = 4/265 (1%)

Query: 1   MVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 60
           +VLGKEKKEMTGL+IGV+SMK+GE ALLHVGWEL YGKEG+FSFPNV PM+D++YEV LI
Sbjct: 99  LVLGKEKKEMTGLSIGVASMKSGERALLHVGWELAYGKEGNFSFPNVPPMSDVLYEVELI 158

Query: 61  GFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQ 120
           GFDETKEGKARSDMTVEERIGAADRRKMDGN LFKEEKLEEAMQQYEMAIAYMGDDFMFQ
Sbjct: 159 GFDETKEGKARSDMTVEERIGAADRRKMDGNVLFKEEKLEEAMQQYEMAIAYMGDDFMFQ 218

Query: 121 LFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAE 180
           LFGKYRDMALAVKNPCHLNM+ACL+KLKRYEEAI QCS+VL EDE+N KALFRRGKARAE
Sbjct: 219 LFGKYRDMALAVKNPCHLNMSACLIKLKRYEEAIAQCSMVLAEDESNAKALFRRGKARAE 278

Query: 181 LGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKK 240
           LGQTDAARED LKA K+APEDK+I REL+LLAEH+KAVY+KQKEIYKGIFGPRPEPK K 
Sbjct: 279 LGQTDAAREDLLKARKYAPEDKAIGRELKLLAEHDKAVYQKQKEIYKGIFGPRPEPKPKH 338

Query: 241 ----NWLIIFWQLLVSLVLGLFKRK 261
                 LI+ WQ L+S    LFKR+
Sbjct: 339 GVIVTQLILIWQWLISFFYRLFKRE 363

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449516701|ref|XP_004165385.1| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP42-like [Cucumis sativus]

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 220/265 (83%), Positives = 239/265 (90%), Gaps = 4/265 (1%)

Query: 1   MVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 60
           +VLGK KKEMTGL+IGV+SMK+GE ALLHVGWEL YGKEG+FSFPNV PM+D++YEV LI
Sbjct: 99  LVLGKRKKEMTGLSIGVASMKSGERALLHVGWELAYGKEGNFSFPNVPPMSDVLYEVELI 158

Query: 61  GFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQ 120
           GFDETKEGKARSDMTVEERIGAADRRKMDGN LFKEEKLEEAMQQYEMAIAYMGDDFMFQ
Sbjct: 159 GFDETKEGKARSDMTVEERIGAADRRKMDGNVLFKEEKLEEAMQQYEMAIAYMGDDFMFQ 218

Query: 121 LFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAE 180
           LFGKYRDMALAVKNPCHLNM+ACL+KLKRYEEAI QCS+VL EDE+N KALFRRGKARAE
Sbjct: 219 LFGKYRDMALAVKNPCHLNMSACLIKLKRYEEAIAQCSMVLAEDESNAKALFRRGKARAE 278

Query: 181 LGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKK 240
           LGQTDAARED LKA K+APEDK+I REL+LLAEH+KAVY+KQKEIYKGIFGPRPEPK K 
Sbjct: 279 LGQTDAAREDLLKARKYAPEDKAIGRELKLLAEHDKAVYQKQKEIYKGIFGPRPEPKPKH 338

Query: 241 ----NWLIIFWQLLVSLVLGLFKRK 261
                 LI+ WQ L+S    LFKRK
Sbjct: 339 GVIVTQLILIWQWLISFFYRLFKRK 363

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	266
UNIPROTKB|Q2QXS0	370	LOC_Os12g05090 "Os12g0145500 p	0.981	0.705	0.8	2.9e-112
TAIR|locus:2089890	365	TWD1 "AT3G21640" [Arabidopsis	1.0	0.728	0.762	3.9e-108
TAIR|locus:2090265	562	ROF1 "AT3G25230" [Arabidopsis	0.827	0.391	0.367	2.1e-28
TAIR|locus:2152561	578	ROF2 "AT5G48570" [Arabidopsis	0.849	0.391	0.357	5e-28
UNIPROTKB|F1SK86	456	FKBP4 "Uncharacterized protein	0.834	0.486	0.311	4e-26
UNIPROTKB|P27124	458	FKBP4 "Peptidyl-prolyl cis-tra	0.834	0.484	0.307	2e-25
MGI|MGI:95543	458	Fkbp4 "FK506 binding protein 4	0.834	0.484	0.307	2e-25
UNIPROTKB|F1MU79	459	FKBP4 "Peptidyl-prolyl cis-tra	0.834	0.483	0.307	2.1e-25
UNIPROTKB|Q9TRY0	459	FKBP4 "Peptidyl-prolyl cis-tra	0.834	0.483	0.307	2.1e-25
RGD|628729	458	Fkbp4 "FK506 binding protein 4	0.834	0.484	0.307	2.6e-25

UNIPROTKB|Q2QXS0 LOC_Os12g05090 "Os12g0145500 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1108 (395.1 bits), Expect = 2.9e-112, P = 2.9e-112
 Identities = 212/265 (80%), Positives = 240/265 (90%)

Query:     1 MVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 60
             +VLGKEKKEMTGL IGVS+M++GE ALLHV WELGYGKEGSFSFPNV PMADLVYEV LI
Sbjct:   104 LVLGKEKKEMTGLGIGVSNMRSGERALLHVNWELGYGKEGSFSFPNVPPMADLVYEVELI 163

Query:    61 GFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQ 120
             GFD+ KEGKARSDMTVEERI AADRRK++GN  FKE+K EEAMQQYEMAIAYMGDDFMFQ
Sbjct:   164 GFDDVKEGKARSDMTVEERIEAADRRKIEGNEYFKEKKFEEAMQQYEMAIAYMGDDFMFQ 223

Query:   121 LFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAE 180
             LFGKYRDMALAVKNPCHLNMAACL+KLKR++EAI QC++VL EDENNVKALFRRGKARAE
Sbjct:   224 LFGKYRDMALAVKNPCHLNMAACLIKLKRFDEAIAQCTIVLSEDENNVKALFRRGKARAE 283

Query:   181 LGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQK- 239
             LGQT++AREDFLKA K++PEDK I RELR LAE +KA+Y+KQKE+YKG+FGPRPEPK K 
Sbjct:   284 LGQTESAREDFLKAKKYSPEDKEIQRELRSLAEQDKALYQKQKELYKGLFGPRPEPKPKA 343

Query:   240 KNWLIIFWQLLVSLV---LGLFKRK 261
              N+L++FW+ LVSL+   + LFKRK
Sbjct:   344 SNFLVLFWRWLVSLIGYLVKLFKRK 368

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

TAIR|locus:2089890 TWD1 "AT3G21640" [Arabidopsis thaliana (taxid:3702)]

 Score = 1069 (381.4 bits), Expect = 3.9e-108, P = 3.9e-108
 Identities = 205/269 (76%), Positives = 236/269 (87%)

Query:     1 MVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 60
             +VLGKEKKE+ GLAIGV+SMK+GE AL+HVGWEL YGKEG+FSFPNV PMADL+YEV +I
Sbjct:    97 LVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVI 156

Query:    61 GFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQ 120
             GFDETKEGKARSDMTVEERIGAADRRKMDGN+LFKEEKLEEAMQQYEMAIAYMGDDFMFQ
Sbjct:   157 GFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQ 216

Query:   121 LFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAE 180
             L+GKY+DMALAVKNPCHLN+AACL+KLKRY+EAIG C++VL E+E N KALFRRGKA+AE
Sbjct:   217 LYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAE 276

Query:   181 LGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKK 240
             LGQ D+AR+DF KA K+AP+DK+I RELR LAE EKA+Y+KQKE+YKGIF  + E   K 
Sbjct:   277 LGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGAKS 336

Query:   241 N---WLIIFWQLLVSLVLGLFKRKRVKAE 266
                 WLI+ WQ  VSL   +F+R RVKA+
Sbjct:   337 KSLFWLIVLWQWFVSLFSRIFRRHRVKAD 365

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS;IDA

GO:0005528 "FK506 binding" evidence=ISS;IBA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006457 "protein folding" evidence=IEA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0005516 "calmodulin binding" evidence=IDA

GO:0048366 "leaf development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

TAIR|locus:2090265 ROF1 "AT3G25230" [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 2.1e-28, P = 2.1e-28
 Identities = 83/226 (36%), Positives = 122/226 (53%)

Query:     6 EKKEMTGLAIGVSSMKAGEHALLHVGWELGYGK-EGSFSFPNVSPMADLVYEVVLIGFDE 64
             E++ + GL   V  MK GE AL+ +  E  +G  E       V P + + YEV L+ FD+
Sbjct:   325 EEQVVDGLDRAVMKMKKGEVALVTIDPEYAFGSNESQQELAVVPPNSTVTYEVDLLTFDK 384

Query:    65 TKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGK 124
              +E     DM  EE+I AA ++K +GN+ FK  K   A ++YE A+ ++  D  F    +
Sbjct:   385 ERESW---DMNTEEKIEAASKKKEEGNSKFKGGKYSLASKRYEKAVKFIEYDTSFS--EE 439

Query:   125 YRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQT 184
              +  A A+K  C+LN AAC LKLK Y++A   C+ VL  +  NVKAL+RR +A  EL   
Sbjct:   440 EKKQAKALKVACNLNDAACKLKLKDYKQAEKLCTKVLELESTNVKALYRRAQAYMELSDL 499

Query:   185 DAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIF 230
             D A  D  KA +  P ++ +  E + L E  K   KK+ + Y  +F
Sbjct:   500 DLAEFDVKKALEIDPNNREVKLEQKRLKEKMKEFNKKEAKFYGNMF 545

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IBA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS;IBA

GO:0005528 "FK506 binding" evidence=ISS;IBA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0009408 "response to heat" evidence=RCA;IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0006457 "protein folding" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009845 "seed germination" evidence=IMP

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IDA

GO:0071944 "cell periphery" evidence=IDA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP

TAIR|locus:2152561 ROF2 "AT5G48570" [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 83/232 (35%), Positives = 116/232 (50%)

Query:     6 EKKEMTGLAIGVSSMKAGEHALLHVGWELGYGK-EGSFSFPNVSPMADLVYEVVLIGFDE 64
             E++ + GL   V  MK GE AL+ +  E  +G  E       + P + + YEV L+ F +
Sbjct:   335 EEQVIEGLEKAVMGMKKGEVALITISPEYAFGSSESKQELAVIPPNSTVYYEVELVSFIK 394

Query:    65 TKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGK 124
              KE     DM  +ERI AA ++K +GN LFK  K   A ++YE  + Y+  D  F    K
Sbjct:   395 EKESW---DMNTQERIEAAGKKKEEGNVLFKAGKYARASKRYERGVKYIEYDSTFDEEEK 451

Query:   125 YRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQT 184
              +   L +   C+LN AAC LKLK Y+EA    + VL  D  NVKA++RR  A  E    
Sbjct:   452 KKSKDLKIA--CNLNDAACKLKLKDYKEAAKLSTKVLEMDSRNVKAMYRRAHAYLETADL 509

Query:   185 DAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEP 236
             D A  D  KA +  P++K +  E + L E  K   KK  + Y  +     EP
Sbjct:   510 DLAELDIKKALEIDPDNKEVKIEYKKLKEKVKEYNKKDAKFYSNMLSKMLEP 561

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IBA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS;IBA

GO:0005528 "FK506 binding" evidence=ISS;IBA

GO:0005634 "nucleus" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;RCA

GO:0016020 "membrane" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005773 "vacuole" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

UNIPROTKB|F1SK86 FKBP4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 297 (109.6 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 71/228 (31%), Positives = 119/228 (52%)

Query:    12 GLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKAR 71
             GL   +  M+ GEH+++++     +G  G   F ++ P A+L YEV L  F++ KE    
Sbjct:   203 GLEKAIQRMEKGEHSIVYLKPSYAFGSAGKEKF-HIPPNAELKYEVHLKSFEKAKESW-- 259

Query:    72 SDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALA 131
              +M+ EE++  +   K  G   FKE K ++A+ QY+  ++++  +  F    +    A A
Sbjct:   260 -EMSSEEKLEQSSIVKERGTVYFKEGKYKQALVQYKKIVSWLEYESSFS--NEDAQKAQA 316

Query:   132 VKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDF 191
             ++   HLN+A C LKL+ +  AI  C+  L  D NN K LFRRG+A   +   D AR DF
Sbjct:   317 LRLASHLNLAMCYLKLQSFSAAIENCNKALELDSNNEKGLFRRGEAHLAVNDFDLARADF 376

Query:   192 LKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQK 239
              K  +  P +K+   +L L  +  +    ++K++Y  +F    E + K
Sbjct:   377 QKVLQLYPSNKAAKAQLALCQQRIRKQLAREKKLYANMFERLAEEESK 424

GO:0051219 "phosphoprotein binding" evidence=IEA

GO:0046661 "male sex differentiation" evidence=IEA

GO:0035259 "glucocorticoid receptor binding" evidence=IEA

GO:0031503 "protein complex localization" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0030850 "prostate gland development" evidence=IEA

GO:0030521 "androgen receptor signaling pathway" evidence=IEA

GO:0007566 "embryo implantation" evidence=IEA

GO:0006463 "steroid hormone receptor complex assembly" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|P27124 FKBP4 "Peptidyl-prolyl cis-trans isomerase FKBP4" [Oryctolagus cuniculus (taxid:9986)]

 Score = 291 (107.5 bits), Expect = 2.0e-25, P = 2.0e-25
 Identities = 70/228 (30%), Positives = 118/228 (51%)

Query:    12 GLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKAR 71
             GL   +  M+ GEH++L++     +G  G   F  + P A+L YEV L  F++ KE    
Sbjct:   203 GLEKAIQRMEKGEHSILYLKPSYAFGNAGKEKF-QIPPYAELKYEVHLKSFEKAKESW-- 259

Query:    72 SDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALA 131
              +M+ EE++  +   K  G   FKE K ++A+ QY+  ++++  +  F    +    A A
Sbjct:   260 -EMSSEEKLEQSAIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS--SEEVQKAQA 316

Query:   132 VKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDF 191
             ++   HLN+A C LKL+ +  A+  C+  L  D NN K LFRRG+A   +   D AR DF
Sbjct:   317 LRLASHLNLAMCHLKLQAFSAAVESCNKALELDSNNEKGLFRRGEAHLAVNDFDLARADF 376

Query:   192 LKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQK 239
              K  +  P +K+   +L +  +  +    ++K++Y  +F    E + K
Sbjct:   377 QKVLQLYPSNKAAKAQLAVCQQRIRKQIAREKKLYANMFERLAEEENK 424

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=ISS

GO:0010977 "negative regulation of neuron projection development" evidence=IDA

GO:0031111 "negative regulation of microtubule polymerization or depolymerization" evidence=IDA

GO:0044295 "axonal growth cone" evidence=ISS

GO:0048156 "tau protein binding" evidence=IPI

GO:0061077 "chaperone-mediated protein folding" evidence=ISS

MGI|MGI:95543 Fkbp4 "FK506 binding protein 4" [Mus musculus (taxid:10090)]

 Score = 291 (107.5 bits), Expect = 2.0e-25, P = 2.0e-25
 Identities = 70/228 (30%), Positives = 119/228 (52%)

Query:    12 GLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKAR 71
             GL   +  M+ GEH+++++     +G  G   F  + P A+L YEV L  F++ KE    
Sbjct:   203 GLEEAIQRMEKGEHSIVYLKPSYAFGSVGKERF-QIPPHAELRYEVRLKSFEKAKESW-- 259

Query:    72 SDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALA 131
              +M+  E++  ++  K  G A FKE K ++A+ QY+  ++++  +  F   G+      A
Sbjct:   260 -EMSSAEKLEQSNIVKERGTAYFKEGKYKQALLQYKKIVSWLEYESSFS--GEEMQKVHA 316

Query:   132 VKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDF 191
             ++   HLN+A C LKL+ +  AI  C+  L  D NN K LFRRG+A   +   D AR DF
Sbjct:   317 LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFDLARADF 376

Query:   192 LKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQK 239
              K  +  P +K+   +L +  +  +    ++K++Y  +F    E + K
Sbjct:   377 QKVLQLYPSNKAAKTQLAVCQQRTRRQLAREKKLYANMFERLAEEEHK 424

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISO

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISO;IBA

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IDA

GO:0005525 "GTP binding" evidence=IDA

GO:0005528 "FK506 binding" evidence=IBA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005829 "cytosol" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0006463 "steroid hormone receptor complex assembly" evidence=IDA

GO:0006825 "copper ion transport" evidence=ISO

GO:0007566 "embryo implantation" evidence=IMP

GO:0016020 "membrane" evidence=IBA

GO:0016853 "isomerase activity" evidence=IEA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0030521 "androgen receptor signaling pathway" evidence=IMP

GO:0030850 "prostate gland development" evidence=IMP

GO:0031072 "heat shock protein binding" evidence=ISO;IDA

GO:0031115 "negative regulation of microtubule polymerization" evidence=ISO

GO:0031503 "protein complex localization" evidence=IDA

GO:0032767 "copper-dependent protein binding" evidence=ISO

GO:0035259 "glucocorticoid receptor binding" evidence=IDA

GO:0043005 "neuron projection" evidence=ISO

GO:0043025 "neuronal cell body" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0044295 "axonal growth cone" evidence=ISO

GO:0046661 "male sex differentiation" evidence=IMP

GO:0048156 "tau protein binding" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

GO:0048608 "reproductive structure development" evidence=IMP

GO:0051219 "phosphoprotein binding" evidence=IDA

GO:0061077 "chaperone-mediated protein folding" evidence=ISO

UNIPROTKB|F1MU79 FKBP4 "Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed" [Bos taurus (taxid:9913)]

 Score = 291 (107.5 bits), Expect = 2.1e-25, P = 2.1e-25
 Identities = 70/228 (30%), Positives = 120/228 (52%)

Query:    12 GLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKAR 71
             GL   +  M+ GEH+++++     +G  G   F  + P A+L YE+ L  F++ KE    
Sbjct:   203 GLEKAIQRMEKGEHSIVYLKPRYAFGSAGKEKF-QIPPNAELKYEIHLKSFEKAKESW-- 259

Query:    72 SDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALA 131
              +M+ EE++  +   K  G   FKE K ++A+ QY+  ++++  +  F    +  + A A
Sbjct:   260 -EMSSEEKLEQSTIVKERGTVYFKEGKYKQAVLQYKKIVSWLEYESSFS--DEDAEKAQA 316

Query:   132 VKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDF 191
             ++   HLN+A C LKL+ +  AI  C+  L  D NN K LFRRG+A   +   D AR DF
Sbjct:   317 LRLASHLNLAMCHLKLQAFSAAIENCNKALELDSNNEKGLFRRGEAHLAVNDFDLARADF 376

Query:   192 LKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQK 239
              K  +  P +K+   +L +  +  +   +K+K++Y  +F    E + K
Sbjct:   377 QKVLQLYPSNKAAKAQLVVCQQRIRKQLEKEKKLYANMFERLAEEETK 424

GO:0051219 "phosphoprotein binding" evidence=IEA

GO:0046661 "male sex differentiation" evidence=IEA

GO:0035259 "glucocorticoid receptor binding" evidence=IEA

GO:0031503 "protein complex localization" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0030850 "prostate gland development" evidence=IEA

GO:0030521 "androgen receptor signaling pathway" evidence=IEA

GO:0007566 "embryo implantation" evidence=IEA

GO:0006463 "steroid hormone receptor complex assembly" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|Q9TRY0 FKBP4 "Peptidyl-prolyl cis-trans isomerase FKBP4" [Bos taurus (taxid:9913)]

 Score = 291 (107.5 bits), Expect = 2.1e-25, P = 2.1e-25
 Identities = 70/228 (30%), Positives = 120/228 (52%)

Query:    12 GLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKAR 71
             GL   +  M+ GEH+++++     +G  G   F  + P A+L YE+ L  F++ KE    
Sbjct:   203 GLEKAIQRMEKGEHSIVYLKPRYAFGSAGKEKF-QIPPNAELKYEIHLKSFEKAKESW-- 259

Query:    72 SDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALA 131
              +M+ EE++  +   K  G   FKE K ++A+ QY+  ++++  +  F    +  + A A
Sbjct:   260 -EMSSEEKLEQSTIVKERGTVYFKEGKYKQAVLQYKKIVSWLEYESSFS--DEDAEKAQA 316

Query:   132 VKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDF 191
             ++   HLN+A C LKL+ +  AI  C+  L  D NN K LFRRG+A   +   D AR DF
Sbjct:   317 LRLASHLNLAMCHLKLQAFSAAIENCNKALELDSNNEKGLFRRGEAHLAVNDFDLARADF 376

Query:   192 LKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQK 239
              K  +  P +K+   +L +  +  +   +K+K++Y  +F    E + K
Sbjct:   377 QKVLQLYPSNKAAKAQLVVCQQRIRKQLEKEKKLYANMFERLAEEETK 424

GO:0031111 "negative regulation of microtubule polymerization or depolymerization" evidence=ISS

GO:0044295 "axonal growth cone" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0061077 "chaperone-mediated protein folding" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0010977 "negative regulation of neuron projection development" evidence=ISS

RGD|628729 Fkbp4 "FK506 binding protein 4" [Rattus norvegicus (taxid:10116)]

 Score = 290 (107.1 bits), Expect = 2.6e-25, P = 2.6e-25
 Identities = 70/228 (30%), Positives = 118/228 (51%)

Query:    12 GLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKAR 71
             GL   +  M+ GEH+++++     +G  G   F  + P A+L YEV L  F++ K   A 
Sbjct:   203 GLEEAIQRMEKGEHSIVYLKPSYAFGSVGKERF-QIPPHAELRYEVHLKSFEKAK---AS 258

Query:    72 SDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALA 131
              +M  EE++  ++  K  G   FKE K ++A+ QY+  ++++  +  F   G+      A
Sbjct:   259 WEMNSEEKLEQSNIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS--GEEMQKVHA 316

Query:   132 VKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDF 191
             ++   HLN+A C LKL+ +  AI  C+  L  D NN K LFRRG+A   +   D AR DF
Sbjct:   317 LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFDLARADF 376

Query:   192 LKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQK 239
              K  +  P +K+   +L +  +  +    ++K++Y  +F    E + K
Sbjct:   377 QKVLQLYPSNKAAKTQLAVCQQRTRRQLAREKKLYANMFERLAEEEHK 424

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISO;ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISO;ISS

GO:0005524 "ATP binding" evidence=IEA;ISO

GO:0005525 "GTP binding" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0005874 "microtubule" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0006463 "steroid hormone receptor complex assembly" evidence=IEA;ISO

GO:0006825 "copper ion transport" evidence=IMP

GO:0007566 "embryo implantation" evidence=IEA;ISO

GO:0010977 "negative regulation of neuron projection development" evidence=ISS

GO:0030521 "androgen receptor signaling pathway" evidence=IEA;ISO

GO:0030850 "prostate gland development" evidence=IEA;ISO

GO:0031072 "heat shock protein binding" evidence=IEA;ISO

GO:0031111 "negative regulation of microtubule polymerization or depolymerization" evidence=ISS

GO:0031115 "negative regulation of microtubule polymerization" evidence=IMP

GO:0031503 "protein complex localization" evidence=IEA;ISO

GO:0032767 "copper-dependent protein binding" evidence=IPI

GO:0035259 "glucocorticoid receptor binding" evidence=IEA;ISO

GO:0043005 "neuron projection" evidence=IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0043234 "protein complex" evidence=IDA

GO:0044295 "axonal growth cone" evidence=IDA

GO:0046661 "male sex differentiation" evidence=IEA;ISO

GO:0048156 "tau protein binding" evidence=IPI

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0048608 "reproductive structure development" evidence=ISO

GO:0051219 "phosphoprotein binding" evidence=IEA;ISO

GO:0061077 "chaperone-mediated protein folding" evidence=ISO;ISS

GO:0005730 "nucleolus" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LDC0	FKB42_ARATH	5, ., 2, ., 1, ., 8	0.7620	1.0	0.7287	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.2.1	0.963
4th Layer	5.2.1.8	0.946

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	266
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	5e-11
pfam00254	94	pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-t	7e-07
pfam13414	69	pfam13414, TPR_11, TPR repeat	6e-06
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-05
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	4e-04
pfam13414	69	pfam13414, TPR_11, TPR repeat	5e-04
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	8e-04

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 57.8 bits (140), Expect = 5e-11
 Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 17/105 (16%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
           GN  +K    +EA++ YE A+         +L     D         + N+AA   KL +
Sbjct: 7   GNLYYKLGDYDEALEYYEKAL---------ELDPDNAD--------AYYNLAAAYYKLGK 49

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKA 194
           YEEA+      L  D +N KA +  G A  +LG+ + A E + KA
Sbjct: 50  YEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKA 94

Length = 100

>gnl|CDD|215821 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase

 Score = 46.1 bits (110), Expect = 7e-07
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 1  MVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 60
            LG  +  + G   G+  MK GE   L +  EL YG+EG      + P A LV+EV L+
Sbjct: 37 FTLGSGQV-IPGWDEGLLGMKVGEKRKLTIPPELAYGEEGLAG-GVIPPNATLVFEVELL 94

Length = 94

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 42.7 bits (101), Expect = 6e-06
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 1/65 (1%)

Query: 136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELG-QTDAAREDFLKA 194
              N+   L KL  Y+EAI      L  D +N +A +    A  +LG   + A ED  KA
Sbjct: 5   ALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKA 64

Query: 195 GKFAP 199
            +  P
Sbjct: 65  LELDP 69

Length = 69

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 4/85 (4%)

Query: 138 LNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKF 197
           LN+     KL  Y+EA+      L  D +N  A +    A  +LG+ + A ED+ KA + 
Sbjct: 4   LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL 63

Query: 198 APED----KSIARELRLLAEHEKAV 218
            P++     ++      L ++E+A+
Sbjct: 64  DPDNAKAYYNLGLAYYKLGKYEEAL 88

Length = 100

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 24/72 (33%), Positives = 37/72 (51%)

Query: 140 MAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAP 199
           +A+  L+L R +EAI   S  LG D ++  AL   G+A   LG  + A E   KA +  P
Sbjct: 335 LASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP 394

Query: 200 EDKSIARELRLL 211
           E+ +   +L + 
Sbjct: 395 ENAAARTQLGIS 406

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 37.7 bits (88), Expect = 5e-04
 Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 18/80 (22%)

Query: 83  ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAA 142
           A+  K  GNALFK    +EA++ YE A+    D+                    + N+A 
Sbjct: 3   AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAE-----------------AYYNLAL 45

Query: 143 CLLKL-KRYEEAIGQCSLVL 161
             LKL K YEEA+      L
Sbjct: 46  AYLKLGKDYEEALEDLEKAL 65

Length = 69

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 36.9 bits (86), Expect = 8e-04
 Identities = 14/58 (24%), Positives = 21/58 (36%)

Query: 144 LLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED 201
            L+   Y+EA+      L       +AL   G+A    G+   A      A    P+D
Sbjct: 7   ALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADPDD 64

Length = 65

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	266
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	100.0
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	99.94
KOG0553	304	consensus TPR repeat-containing protein [General f	99.88
KOG4234	271	consensus TPR repeat-containing protein [General f	99.82
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.79
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.73
PRK15359	144	type III secretion system chaperone protein SscB;	99.7
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.69
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.68
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.67
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.65
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.62
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.59
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.58
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.58
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.58
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.53
PRK11189	296	lipoprotein NlpI; Provisional	99.52
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.51
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	99.49
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.49
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.47
PRK15359	144	type III secretion system chaperone protein SscB;	99.46
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	99.46
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.44
KOG1126	638	consensus DNA-binding cell division cycle control	99.44
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	99.41
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.38
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.38
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.37
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.36
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.36
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.36
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.32
KOG1126	638	consensus DNA-binding cell division cycle control	99.32
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.32
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.32
PRK12370	553	invasion protein regulator; Provisional	99.32
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.31
PRK12370	553	invasion protein regulator; Provisional	99.31
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.3
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.3
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.29
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.29
PRK15331	165	chaperone protein SicA; Provisional	99.28
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.28
PRK11189	296	lipoprotein NlpI; Provisional	99.28
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.27
KOG0544	108	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.27
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.25
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.25
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.23
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.23
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.22
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.22
KOG0553	304	consensus TPR repeat-containing protein [General f	99.22
PRK10803	263	tol-pal system protein YbgF; Provisional	99.19
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.19
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	99.17
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.17
KOG2076	895	consensus RNA polymerase III transcription factor	99.16
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.14
PLN02789	320	farnesyltranstransferase	99.13
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.13
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.12
KOG1125	579	consensus TPR repeat-containing protein [General f	99.12
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.12
PF13371	73	TPR_9: Tetratricopeptide repeat	99.12
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.11
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.1
KOG4555	175	consensus TPR repeat-containing protein [Function	99.09
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.08
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.08
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.08
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.07
PF13512	142	TPR_18: Tetratricopeptide repeat	99.07
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.05
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.05
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.05
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.05
KOG1125	579	consensus TPR repeat-containing protein [General f	99.04
KOG2003	840	consensus TPR repeat-containing protein [General f	99.04
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	99.04
KOG0549	188	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.03
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.02
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.01
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.0
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	99.0
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.99
PLN02789	320	farnesyltranstransferase	98.99
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.99
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.98
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.97
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.96
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.96
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.94
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.93
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.92
PRK14574	822	hmsH outer membrane protein; Provisional	98.92
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.91
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.9
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.89
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.87
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.86
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.84
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.83
PF12688	120	TPR_5: Tetratrico peptide repeat	98.81
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.78
PF00254	94	FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomer	98.77
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.77
PF13371	73	TPR_9: Tetratricopeptide repeat	98.76
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.75
KOG2076	895	consensus RNA polymerase III transcription factor	98.75
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.75
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.74
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.74
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.68
TIGR03516	177	ppisom_GldI peptidyl-prolyl isomerase, gliding mot	98.68
COG0545	205	FkpA FKBP-type peptidyl-prolyl cis-trans isomerase	98.67
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.66
KOG1129	478	consensus TPR repeat-containing protein [General f	98.66
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.66
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.64
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.63
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.62
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.62
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.62
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.61
KOG1310	758	consensus WD40 repeat protein [General function pr	98.6
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.6
PRK14574	822	hmsH outer membrane protein; Provisional	98.59
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.59
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.56
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.56
PRK11906	458	transcriptional regulator; Provisional	98.55
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.55
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.55
KOG1129	478	consensus TPR repeat-containing protein [General f	98.54
PF03704	146	BTAD: Bacterial transcriptional activator domain;	98.52
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.51
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.5
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.5
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.5
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.49
PRK10803	263	tol-pal system protein YbgF; Provisional	98.47
KOG0552	226	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.46
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.43
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.43
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.41
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.4
PF12688	120	TPR_5: Tetratrico peptide repeat	98.39
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.39
PF13428	44	TPR_14: Tetratricopeptide repeat	98.39
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.36
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.36
PF13431	34	TPR_17: Tetratricopeptide repeat	98.34
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.32
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.32
PRK11570	206	peptidyl-prolyl cis-trans isomerase; Provisional	98.31
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.3
KOG4234	271	consensus TPR repeat-containing protein [General f	98.3
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.29
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.29
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.29
PRK15331	165	chaperone protein SicA; Provisional	98.26
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.25
PRK11906	458	transcriptional regulator; Provisional	98.25
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.24
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.2
KOG2003	840	consensus TPR repeat-containing protein [General f	98.18
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.18
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	98.16
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.15
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.12
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.11
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.11
PF13428	44	TPR_14: Tetratricopeptide repeat	98.1
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.1
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.07
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.04
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	98.03
PRK10902	269	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	98.03
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.03
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.02
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.01
PRK10941	269	hypothetical protein; Provisional	97.97
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.97
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	97.95
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.95
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.92
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.91
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.9
PF13512	142	TPR_18: Tetratricopeptide repeat	97.89
KOG4555	175	consensus TPR repeat-containing protein [Function	97.86
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.83
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.83
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	97.81
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.77
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.76
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.74
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.72
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.61
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.58
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.58
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.57
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.56
KOG4814	872	consensus Uncharacterized conserved protein [Funct	97.56
KOG3364	149	consensus Membrane protein involved in organellar	97.56
PF13431	34	TPR_17: Tetratricopeptide repeat	97.52
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.5
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.48
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.48
KOG1941	518	consensus Acetylcholine receptor-associated protei	97.48
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.47
KOG1586	288	consensus Protein required for fusion of vesicles	97.47
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.46
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.45
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.44
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.43
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.39
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.38
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.36
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.3
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.25
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	97.23
COG2912	269	Uncharacterized conserved protein [Function unknow	97.2
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.17
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.11
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.08
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.08
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	97.07
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.06
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.04
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.97
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.96
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	96.94
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.93
KOG1915	677	consensus Cell cycle control protein (crooked neck	96.93
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.93
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	96.93
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.93
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.92
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.9
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.89
PRK04841	903	transcriptional regulator MalT; Provisional	96.87
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.85
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.81
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.78
PLN03077	857	Protein ECB2; Provisional	96.76
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.75
PLN03218	1060	maturation of RBCL 1; Provisional	96.75
PLN03218	1060	maturation of RBCL 1; Provisional	96.72
KOG4340	459	consensus Uncharacterized conserved protein [Funct	96.7
PRK15095	156	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	96.66
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	96.64
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.61
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	96.57
KOG4507	886	consensus Uncharacterized conserved protein, conta	96.55
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	96.55
COG3629	280	DnrI DNA-binding transcriptional activator of the	96.53
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.43
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.42
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.4
PLN03077	857	Protein ECB2; Provisional	96.39
PRK04841	903	transcriptional regulator MalT; Provisional	96.34
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	96.28
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	96.28
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.26
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.26
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	96.19
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	96.05
KOG1585	308	consensus Protein required for fusion of vesicles	96.04
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.03
PRK10941	269	hypothetical protein; Provisional	96.03
KOG2471	696	consensus TPR repeat-containing protein [General f	95.97
KOG1586	288	consensus Protein required for fusion of vesicles	95.89
KOG1915	677	consensus Cell cycle control protein (crooked neck	95.85
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	95.66
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.64
KOG2471	696	consensus TPR repeat-containing protein [General f	95.43
COG3947	361	Response regulator containing CheY-like receiver a	95.29
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	95.22
COG1047	174	SlpA FKBP-type peptidyl-prolyl cis-trans isomerase	95.21
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	95.2
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	95.16
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	95.15
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	95.13
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	95.04
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.0
PRK10737	196	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	94.87
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	94.79
KOG1585	308	consensus Protein required for fusion of vesicles	94.79
KOG2300	629	consensus Uncharacterized conserved protein [Funct	94.77
KOG3364	149	consensus Membrane protein involved in organellar	94.62
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	94.45
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	94.28
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	94.27
COG4976	287	Predicted methyltransferase (contains TPR repeat)	94.18
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	93.99
COG3898	531	Uncharacterized membrane-bound protein [Function u	93.93
KOG1550	552	consensus Extracellular protein SEL-1 and related	93.63
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	93.44
COG3118	304	Thioredoxin domain-containing protein [Posttransla	93.38
KOG4814	872	consensus Uncharacterized conserved protein [Funct	93.29
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	93.09
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	92.81
COG3898	531	Uncharacterized membrane-bound protein [Function u	92.69
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	92.66
COG5191	435	Uncharacterized conserved protein, contains HAT (H	92.65
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	92.64
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	92.41
COG2912	269	Uncharacterized conserved protein [Function unknow	92.35
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	92.34
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	92.33
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	91.98
PHA02537	230	M terminase endonuclease subunit; Provisional	91.96
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	91.86
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	91.85
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	91.66
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	91.6
TIGR00115	408	tig trigger factor. Trigger factor is a ribosome-a	91.3
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	91.26
KOG0529	421	consensus Protein geranylgeranyltransferase type I	91.23
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	91.02
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	91.01
PF06957	422	COPI_C: Coatomer (COPI) alpha subunit C-terminus;	91.0
KOG1550	552	consensus Extracellular protein SEL-1 and related	90.98
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	90.8
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	90.7
KOG0549	188	consensus FKBP-type peptidyl-prolyl cis-trans isom	90.61
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	90.3
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	90.14
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	89.91
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	89.24
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	89.14
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	88.95
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	88.91
PRK01490	435	tig trigger factor; Provisional	88.84
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	88.34
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	88.07
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	87.9
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	87.72
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	87.65
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	87.51
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	87.27
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	87.21
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	87.09
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	86.53
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	86.23
KOG1310	758	consensus WD40 repeat protein [General function pr	86.2
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	86.07
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	85.92
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	85.7
PF04212	69	MIT: MIT (microtubule interacting and transport) d	85.53
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	85.34
COG3629	280	DnrI DNA-binding transcriptional activator of the	85.24
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	85.23
KOG2422	665	consensus Uncharacterized conserved protein [Funct	85.21
COG4941	415	Predicted RNA polymerase sigma factor containing a	85.18
COG4455	273	ImpE Protein of avirulence locus involved in tempe	85.15
KOG2300	629	consensus Uncharacterized conserved protein [Funct	84.98
KOG2047	835	consensus mRNA splicing factor [RNA processing and	84.67
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	84.67
cd02679	79	MIT_spastin MIT: domain contained within Microtubu	84.43
cd02684	75	MIT_2 MIT: domain contained within Microtubule Int	83.79
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	83.76
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	83.53
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	82.99
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	82.35
KOG2422	665	consensus Uncharacterized conserved protein [Funct	82.34
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	82.28
cd02680	75	MIT_calpain7_2 MIT: domain contained within Microt	82.27
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	81.75
cd02677	75	MIT_SNX15 MIT: domain contained within Microtubule	81.53
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	81.43
cd02678	75	MIT_VPS4 MIT: domain contained within Microtubule	80.47

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.9e-44  Score=302.85  Aligned_cols=256  Identities=40%  Similarity=0.557  Sum_probs=230.8

Q ss_pred             cCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeecc-ccccCCCCCCCCHHHHHH
Q 024531            3 LGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD-ETKEGKARSDMTVEERIG   81 (266)
Q Consensus         3 lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~~-~~~~~~~~~~~~~~~~~~   81 (266)
                      +|++.+||.|||.||+.|++||+|.|+|+|.|+||..|. ++|.|||++++.|+|+|+++. ..++   .|.+..++++.
T Consensus       131 ~Ge~~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~-~~p~IPPnA~l~yEVeL~~f~~~~~~---s~~~~~~e~l~  206 (397)
T KOG0543|consen  131 EGEDIDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGG-EPPLIPPNATLLYEVELLDFELKEDE---SWKMFAEERLE  206 (397)
T ss_pred             cCCccchhHHHHHHHHhcCccceEEEEeCcccccCCCCC-CCCCCCCCceEEEEEEEEeeecCccc---ccccchHHHHH
Confidence            677558999999999999999999999999999994333 488999999999999999998 6655   89999999999


Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531           82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  161 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al  161 (266)
                      .+...++.||.+|+.|+|..|...|.+|+...+.....  ..+...+..++...+++|+|.||+++++|..|+..|+++|
T Consensus       207 ~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~--~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL  284 (397)
T KOG0543|consen  207 AADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSF--DEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVL  284 (397)
T ss_pred             HHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccC--CHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence            99999999999999999999999999999998865443  3356667788899999999999999999999999999999


Q ss_pred             cCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCccc--
Q 024531          162 GEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQK--  239 (266)
Q Consensus       162 ~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~--  239 (266)
                      +++|+|.+|+||+|.|+..+|+|+.|+.+|+++++++|+|.++...|..|.++.++++.+++++|.+||+........  
T Consensus       285 e~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~~~~k~~  364 (397)
T KOG0543|consen  285 ELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLAEESAKTK  364 (397)
T ss_pred             hcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999986655444  


Q ss_pred             -chhHHHhHHHHHHHHHHHhhhhccc
Q 024531          240 -KNWLIIFWQLLVSLVLGLFKRKRVK  264 (266)
Q Consensus       240 -~~~~~~~~~~~~~~~~~~~~~~~~~  264 (266)
                       .+|....|+|..+.....+...+.+
T Consensus       365 s~~~~~~~~~~~~~~~~~~~~~~~~~  390 (397)
T KOG0543|consen  365 SEAALEDKPKEQEGLTKDKDGTARLK  390 (397)
T ss_pred             cchhcccCccchhcchhhhcchhhhh
Confidence             7777888999888887776665543

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1.3e-26  Score=183.84  Aligned_cols=230  Identities=25%  Similarity=0.343  Sum_probs=191.1

Q ss_pred             CccCCCCccchhHHHHhhcCCCCcEEEEEEecCcc--c-------CC--CCCCCC---------------CC--------
Q 024531            1 MVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELG--Y-------GK--EGSFSF---------------PN--------   46 (266)
Q Consensus         1 ~~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~--~-------~~--~g~~~~---------------~~--------   46 (266)
                      |++|.-+ -.+-+|.++.+|..+|++.|.++..+.  |       .+  .|..+.               ..        
T Consensus        61 iiiGkkF-kL~VwE~il~tM~v~EvaqF~~d~~~~vqYPfvsksLRdia~GK~p~e~~~H~Cg~a~m~~~~glGyedLDe  139 (329)
T KOG0545|consen   61 IIIGKKF-KLEVWEIILTTMRVHEVAQFWCDTIHTVQYPFVSKSLRDIAQGKDPTEWHRHCCGLANMFAYHGLGYEDLDE  139 (329)
T ss_pred             Eeecccc-ccHHHHHHHHHHhhhhHHHhhhhhhheeechhHHHHHHHHhcCCCcchhhhhhhhhHHHHHhcCCChhhHHH
Confidence            4678775 578899999999999999999874321  1       00  011100               00        


Q ss_pred             -CCCCCceEEEEEEeeccccccC-CCCCCCCHHHHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchh
Q 024531           47 -VSPMADLVYEVVLIGFDETKEG-KARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGK  124 (266)
Q Consensus        47 -ip~~~~~~~~i~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~  124 (266)
                       ....+++.|.++|..+..+..+ ...|.|+.+++...+..+++.||.+|+.|+|.+|...|..||....+-...+.+++
T Consensus       140 L~knPqpL~FviellqVe~P~qYq~e~WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e  219 (329)
T KOG0545|consen  140 LQKNPQPLVFVIELLQVEAPSQYQRETWQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGE  219 (329)
T ss_pred             HhhCCCceEeehhhhhccCchhhccccccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence             1223689999999999887776 56899999999999999999999999999999999999999987655333333332


Q ss_pred             -HHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CH
Q 024531          125 -YRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE-DK  202 (266)
Q Consensus       125 -~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~-~~  202 (266)
                       ++-++..+..+++.|.++|++..|+|.+++++|..+|..+|.|.+|||++|.++....+-++|.++|.++|+++|. -+
T Consensus       220 ~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas  299 (329)
T KOG0545|consen  220 PEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS  299 (329)
T ss_pred             hHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence             4567778888899999999999999999999999999999999999999999999999999999999999999997 45


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 024531          203 SIARELRLLAEHEKAVYKKQKEIYKGIFG  231 (266)
Q Consensus       203 ~~~~~l~~l~~~~~~~~~~~~~~~~k~~~  231 (266)
                      .+.++|..+..++.+..+..+-.+++||+
T Consensus       300 vVsrElr~le~r~~ek~~edr~~~~kmfs  328 (329)
T KOG0545|consen  300 VVSRELRLLENRMAEKQEEDRLRCRKMFS  328 (329)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHhcC
Confidence            67788999988888888888889999996

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.88  E-value=1.1e-21  Score=160.69  Aligned_cols=127  Identities=31%  Similarity=0.402  Sum_probs=118.7

Q ss_pred             CHHHHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHH
Q 024531           75 TVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAI  154 (266)
Q Consensus        75 ~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~  154 (266)
                      +..+....++.++.+|+.+++.++|.+|+..|.+||.++|.++.+                 |.|+|.+|.++|.++.|+
T Consensus        73 ~~~e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVy-----------------ycNRAAAy~~Lg~~~~AV  135 (304)
T KOG0553|consen   73 TPEEDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVY-----------------YCNRAAAYSKLGEYEDAV  135 (304)
T ss_pred             ChHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchH-----------------HHHHHHHHHHhcchHHHH
Confidence            333677889999999999999999999999999999999998874                 999999999999999999


Q ss_pred             HHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 024531          155 GQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAV  218 (266)
Q Consensus       155 ~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~  218 (266)
                      ++|..+|.+||.+.++|.++|.+|..+|+|.+|++.|+++|+++|+|+..+..|......+++.
T Consensus       136 kDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~  199 (304)
T KOG0553|consen  136 KDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEP  199 (304)
T ss_pred             HHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999999999999999999999999999999999876665554

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.82  E-value=4.7e-19  Score=137.21  Aligned_cols=134  Identities=29%  Similarity=0.355  Sum_probs=121.3

Q ss_pred             HHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHH
Q 024531           78 ERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQC  157 (266)
Q Consensus        78 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~  157 (266)
                      .....+..++..||.+|.+|+|.+|...|+.||.++|..+.            +....+|.|+|.|+++++.|+.|+..|
T Consensus        90 k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~------------e~rsIly~Nraaa~iKl~k~e~aI~dc  157 (271)
T KOG4234|consen   90 KAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST------------EERSILYSNRAAALIKLRKWESAIEDC  157 (271)
T ss_pred             HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH------------HHHHHHHhhhHHHHHHhhhHHHHHHHH
Confidence            34678899999999999999999999999999999998543            335558999999999999999999999


Q ss_pred             HhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 024531          158 SLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQK  223 (266)
Q Consensus       158 ~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~  223 (266)
                      .++|+++|.+.+|+.++|.+|.++..|++|+.+|.++++++|.+.+++..+.++-....+.+++.+
T Consensus       158 sKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmK  223 (271)
T KOG4234|consen  158 SKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMK  223 (271)
T ss_pred             HhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999776666555544

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=9.1e-19  Score=148.55  Aligned_cols=160  Identities=24%  Similarity=0.279  Sum_probs=141.1

Q ss_pred             HHHHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHH
Q 024531           76 VEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIG  155 (266)
Q Consensus        76 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~  155 (266)
                      ....++.....+..||..|++|.|..|.+.|..+|.++|+...             ..+.+|.|+|.+..++|+..+|+.
T Consensus       242 ~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~-------------~naklY~nra~v~~rLgrl~eais  308 (486)
T KOG0550|consen  242 ASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKK-------------TNAKLYGNRALVNIRLGRLREAIS  308 (486)
T ss_pred             HhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccc-------------hhHHHHHHhHhhhcccCCchhhhh
Confidence            3445788889999999999999999999999999999998533             366789999999999999999999


Q ss_pred             HHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 024531          156 QCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPE  235 (266)
Q Consensus       156 ~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~  235 (266)
                      +|+.|+.+||..++++.++|.||..+++|++|+++|++|++++.+ .+.+..+.   +.+....+.++++|++++++...
T Consensus       309 dc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~---~A~~aLkkSkRkd~ykilGi~~~  384 (486)
T KOG0550|consen  309 DCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLR---EAQLALKKSKRKDWYKILGISRN  384 (486)
T ss_pred             hhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHH---HHHHHHHHhhhhhHHHHhhhhhh
Confidence            999999999999999999999999999999999999999999887 77776666   44556666788899999999887


Q ss_pred             Cccc---chhHHHhHHHHHH
Q 024531          236 PKQK---KNWLIIFWQLLVS  252 (266)
Q Consensus       236 ~~~~---~~~~~~~~~~~~~  252 (266)
                      .+..   ++|++.++.|+..
T Consensus       385 as~~eikkayrk~AL~~Hpd  404 (486)
T KOG0550|consen  385 ASDDEIKKAYRKLALVHHPD  404 (486)
T ss_pred             cccchhhhHHHHHHHHhCCC
Confidence            7655   9999999888764

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=5.1e-17  Score=142.03  Aligned_cols=119  Identities=29%  Similarity=0.380  Sum_probs=113.0

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531           80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  159 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~  159 (266)
                      ++.+...+..|+.+|+.|+|..|+.+|+++|..+|++..                 +|.|+|.||.+++.+..|+.+|+.
T Consensus       355 pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~-----------------lYsNRAac~~kL~~~~~aL~Da~~  417 (539)
T KOG0548|consen  355 PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR-----------------LYSNRAACYLKLGEYPEALKDAKK  417 (539)
T ss_pred             hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH-----------------HHHHHHHHHHHHhhHHHHHHHHHH
Confidence            445777788899999999999999999999999999776                 699999999999999999999999


Q ss_pred             HhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 024531          160 VLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE  215 (266)
Q Consensus       160 al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  215 (266)
                      +++++|+++++|+|.|.|+..+.+|++|++.|+.+++++|++.++...+.+|...+
T Consensus       418 ~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~  473 (539)
T KOG0548|consen  418 CIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ  473 (539)
T ss_pred             HHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999997765

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.70  E-value=1.2e-15  Score=116.62  Aligned_cols=114  Identities=20%  Similarity=0.223  Sum_probs=105.6

Q ss_pred             HHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCC
Q 024531           85 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED  164 (266)
Q Consensus        85 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~  164 (266)
                      .+...|..++..|+|++|+..|.+++...|.+..                 ++.++|.++..+|++++|+..|++++.++
T Consensus        26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~-----------------a~~~lg~~~~~~g~~~~A~~~y~~Al~l~   88 (144)
T PRK15359         26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWR-----------------AHIALAGTWMMLKEYTTAINFYGHALMLD   88 (144)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH-----------------HHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            3567899999999999999999999999999766                 69999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 024531          165 ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE  215 (266)
Q Consensus       165 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  215 (266)
                      |+++.+++++|.++..+|++++|+..|++++.++|+++......+.+...+
T Consensus        89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l  139 (144)
T PRK15359         89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV  139 (144)
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999987777654433

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.69  E-value=6e-16  Score=134.02  Aligned_cols=129  Identities=31%  Similarity=0.414  Sum_probs=111.4

Q ss_pred             CCCCHHHHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHH
Q 024531           72 SDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYE  151 (266)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~  151 (266)
                      -.++.+++.+.+..++.+||.+|.+|+|++||++|++||+++|+.+.+                 |.|++.||..+|+|+
T Consensus       104 ~a~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiF-----------------YsNraAcY~~lgd~~  166 (606)
T KOG0547|consen  104 KAMLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIF-----------------YSNRAACYESLGDWE  166 (606)
T ss_pred             hccChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchh-----------------hhhHHHHHHHHhhHH
Confidence            456778889999999999999999999999999999999999997663                 999999999999999


Q ss_pred             HHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHH
Q 024531          152 EAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFA-PEDKSIARELRLLAEHEKA  217 (266)
Q Consensus       152 ~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~l~~l~~~~~~  217 (266)
                      +.+++|.++|+++|++.++++|++.++..+|++++|+.+..-..-++ -.|..+.-.+.++.+.+..
T Consensus       167 ~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~  233 (606)
T KOG0547|consen  167 KVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAM  233 (606)
T ss_pred             HHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999876433322 2466666666666544444

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.68  E-value=1.1e-15  Score=133.65  Aligned_cols=118  Identities=19%  Similarity=0.262  Sum_probs=110.7

Q ss_pred             HHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcC
Q 024531           84 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE  163 (266)
Q Consensus        84 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l  163 (266)
                      ..+...|+.+|..|+|..|+..|.++|.+.|.+..                 ++.++|.+|..+|++++|+.++++++.+
T Consensus         3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~-----------------a~~~~a~~~~~~g~~~eAl~~~~~Al~l   65 (356)
T PLN03088          3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAE-----------------LYADRAQANIKLGNFTEAVADANKAIEL   65 (356)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            45778899999999999999999999999999765                 6999999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 024531          164 DENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAV  218 (266)
Q Consensus       164 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~  218 (266)
                      +|+++.+++++|.+++.+|+|++|+..|++++.++|+++.+...+..|...++..
T Consensus        66 ~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~~  120 (356)
T PLN03088         66 DPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEE  120 (356)
T ss_pred             CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999887776543

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.67  E-value=4.1e-16  Score=129.99  Aligned_cols=163  Identities=17%  Similarity=0.211  Sum_probs=140.7

Q ss_pred             HHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHH
Q 024531           78 ERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQC  157 (266)
Q Consensus        78 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~  157 (266)
                      .++..+....+-+......++|.+++..+++.++..|....+             ....+.-++.|+..-+.+.+|+..|
T Consensus       264 KklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~i-------------r~~~~r~~c~C~~~d~~~~eAiqqC  330 (504)
T KOG0624|consen  264 KKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMI-------------RYNGFRVLCTCYREDEQFGEAIQQC  330 (504)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccce-------------eeeeeheeeecccccCCHHHHHHHH
Confidence            445556666667778888899999999999999999885432             3334667899999999999999999


Q ss_pred             HhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCc
Q 024531          158 SLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPK  237 (266)
Q Consensus       158 ~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~~~  237 (266)
                      +++|.++|++..++..++.+|+--..|+.|+.+|++|++.+|+|..++..+...   .+-..+..+++|+|++++.+..+
T Consensus       331 ~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~A---krlkkqs~kRDYYKILGVkRnAs  407 (504)
T KOG0624|consen  331 KEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERA---KRLKKQSGKRDYYKILGVKRNAS  407 (504)
T ss_pred             HHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHH---HHHHHHhccchHHHHhhhccccc
Confidence            999999999999999999999999999999999999999999999999988865   34444577889999999999887


Q ss_pred             cc---chhHHHhHHHHHHHHHH
Q 024531          238 QK---KNWLIIFWQLLVSLVLG  256 (266)
Q Consensus       238 ~~---~~~~~~~~~~~~~~~~~  256 (266)
                      ..   ++||+.+.+|+...|..
T Consensus       408 KqEI~KAYRKlAqkWHPDNFqd  429 (504)
T KOG0624|consen  408 KQEITKAYRKLAQKWHPDNFQD  429 (504)
T ss_pred             HHHHHHHHHHHHHhcCCccccC
Confidence            77   99999999999988764

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.65  E-value=9.2e-16  Score=127.95  Aligned_cols=125  Identities=30%  Similarity=0.394  Sum_probs=115.3

Q ss_pred             CCCCHHHHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHH
Q 024531           72 SDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYE  151 (266)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~  151 (266)
                      .+.-.++.+.....++++||.||++|.|++|+..|.+++...|.++.                 .+.|+|.+|++++.|.
T Consensus        86 vd~I~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV-----------------~~~NRA~AYlk~K~FA  148 (536)
T KOG4648|consen   86 VDPIAQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPV-----------------YHINRALAYLKQKSFA  148 (536)
T ss_pred             ccHHHHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCcc-----------------chhhHHHHHHHHHHHH
Confidence            33455677888889999999999999999999999999999998766                 5999999999999999


Q ss_pred             HHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024531          152 EAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAE  213 (266)
Q Consensus       152 ~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  213 (266)
                      .|..+|+.|+.+|..+.+||-++|.+...+|+..+|.++++.+|+++|++.+.++.++.+..
T Consensus       149 ~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S  210 (536)
T KOG4648|consen  149 QAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINS  210 (536)
T ss_pred             HHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999888888777754

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.62  E-value=2.8e-14  Score=133.79  Aligned_cols=136  Identities=25%  Similarity=0.267  Sum_probs=117.2

Q ss_pred             CCCCCCCceEEEEEEeeccccccCCCCCCCCHHHHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchh
Q 024531           45 PNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGK  124 (266)
Q Consensus        45 ~~ip~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~  124 (266)
                      +..|++..+.....+..+...    ..+.++.+++...+..+++.|+.+|+.|+|++|+..|.++|.+.|+ ..      
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~------  161 (615)
T TIGR00990        93 STAPKNAPVEPADELPEIDES----SVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PV------  161 (615)
T ss_pred             CCCCCCCCCCccccccccchh----hcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hH------
Confidence            345666666655555433322    2688899999999999999999999999999999999999999986 22      


Q ss_pred             HHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 024531          125 YRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK  202 (266)
Q Consensus       125 ~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~  202 (266)
                                 .+.|+|.||.++|+|++|+.+|+++++++|++.++++++|.+|..+|+|++|+.+|..++.+++.+.
T Consensus       162 -----------~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~  228 (615)
T TIGR00990       162 -----------YYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRN  228 (615)
T ss_pred             -----------HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcc
Confidence                       4899999999999999999999999999999999999999999999999999999999988877543

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.59  E-value=7.9e-14  Score=105.10  Aligned_cols=117  Identities=21%  Similarity=0.279  Sum_probs=106.3

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531           80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  159 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~  159 (266)
                      +.........|..++..|++++|+..|++++...|.+..                 ++.++|.++...|++++|+..+++
T Consensus        14 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~-----------------~~~~la~~~~~~~~~~~A~~~~~~   76 (135)
T TIGR02552        14 SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSR-----------------YWLGLAACCQMLKEYEEAIDAYAL   76 (135)
T ss_pred             hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHH-----------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334566789999999999999999999999999998665                 689999999999999999999999


Q ss_pred             HhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024531          160 VLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAE  213 (266)
Q Consensus       160 al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  213 (266)
                      ++..+|.++..++.+|.++..+|++++|+..|+++++++|++.........+..
T Consensus        77 ~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  130 (135)
T TIGR02552        77 AAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEA  130 (135)
T ss_pred             HHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999887766665543

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.58  E-value=1.3e-14  Score=127.06  Aligned_cols=113  Identities=23%  Similarity=0.248  Sum_probs=107.9

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  162 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~  162 (266)
                      +..+++.||..|..|+|+.|+.+|..+|.++|.+..                 +|.|++.||..+|+|.+|+.+..+.++
T Consensus         2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhv-----------------lySnrsaa~a~~~~~~~al~da~k~~~   64 (539)
T KOG0548|consen    2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHV-----------------LYSNRSAAYASLGSYEKALKDATKTRR   64 (539)
T ss_pred             hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccc-----------------hhcchHHHHHHHhhHHHHHHHHHHHHh
Confidence            456789999999999999999999999999999655                 799999999999999999999999999


Q ss_pred             CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024531          163 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLA  212 (266)
Q Consensus       163 l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  212 (266)
                      ++|+.+++|.++|.+++.+|+|++|+..|.+.|+.+|+|+.....|....
T Consensus        65 l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   65 LNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY  114 (539)
T ss_pred             cCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence            99999999999999999999999999999999999999999999998876

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.58  E-value=1.2e-13  Score=104.70  Aligned_cols=106  Identities=11%  Similarity=0.091  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531           80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  159 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~  159 (266)
                      .+..+.++..|..++..|++++|...|+-...++|.+..+                 ++|+|.|+..+|+|.+|+..|.+
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y-----------------~~gLG~~~Q~~g~~~~AI~aY~~   94 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDY-----------------WFRLGECCQAQKHWGEAIYAYGR   94 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHH-----------------HHHHHHHHHHHhhHHHHHHHHHH
Confidence            4557888999999999999999999999999999998774                 99999999999999999999999


Q ss_pred             HhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 024531          160 VLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK  202 (266)
Q Consensus       160 al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~  202 (266)
                      ++.++|+++.++++.|.|++.+|+.+.|.+.|+.++...-+++
T Consensus        95 A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~  137 (157)
T PRK15363         95 AAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVS  137 (157)
T ss_pred             HHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCh
Confidence            9999999999999999999999999999999999999875443

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.58  E-value=9.5e-15  Score=129.91  Aligned_cols=143  Identities=17%  Similarity=0.130  Sum_probs=123.4

Q ss_pred             HHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHH
Q 024531           79 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS  158 (266)
Q Consensus        79 ~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~  158 (266)
                      .+.-++.+.++|+++-..+.|++|+..|.+|+.+.|+...                 ++-|+|.+|..+|..+-||..|+
T Consensus       248 dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~-----------------a~gNla~iYyeqG~ldlAI~~Yk  310 (966)
T KOG4626|consen  248 DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAV-----------------AHGNLACIYYEQGLLDLAIDTYK  310 (966)
T ss_pred             CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchh-----------------hccceEEEEeccccHHHHHHHHH
Confidence            3556778889999999999999999999999999998554                 68899999999999999999999


Q ss_pred             hHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcc
Q 024531          159 LVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQ  238 (266)
Q Consensus       159 ~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~~~~  238 (266)
                      ++|+++|+.+.||.++|.++-..|+..+|+.+|.+||.+.|+++++..+|+.++..+...+. ...+|.+.|.+.++...
T Consensus       311 ral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~-A~~ly~~al~v~p~~aa  389 (966)
T KOG4626|consen  311 RALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEE-ATRLYLKALEVFPEFAA  389 (966)
T ss_pred             HHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchH-HHHHHHHHHhhChhhhh
Confidence            99999999999999999999999999999999999999999999999999988777766654 44568888888888776


Q ss_pred             c
Q 024531          239 K  239 (266)
Q Consensus       239 ~  239 (266)
                      .
T Consensus       390 a  390 (966)
T KOG4626|consen  390 A  390 (966)
T ss_pred             h
Confidence            6

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.53  E-value=3.7e-13  Score=106.92  Aligned_cols=156  Identities=21%  Similarity=0.122  Sum_probs=113.8

Q ss_pred             HHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHH
Q 024531           79 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS  158 (266)
Q Consensus        79 ~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~  158 (266)
                      .-..+....++|..+++.|++..|...+.+||+.+|+...                 ++..+|..|.+.|+.+.|-+.|+
T Consensus        31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~-----------------a~~~~A~~Yq~~Ge~~~A~e~Yr   93 (250)
T COG3063          31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYL-----------------AHLVRAHYYQKLGENDLADESYR   93 (250)
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH-----------------HHHHHHHHHHHcCChhhHHHHHH
Confidence            3455777889999999999999999999999999998655                 35555555555555555555555


Q ss_pred             hHhcCCCCc------------------------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 024531          159 LVLGEDENN------------------------------------VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK  202 (266)
Q Consensus       159 ~al~l~p~~------------------------------------~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~  202 (266)
                      +|+.++|++                                    +..+-++|.|..++|+++.|..+|+++++++|+++
T Consensus        94 kAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~  173 (250)
T COG3063          94 KALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFP  173 (250)
T ss_pred             HHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC
Confidence            555555543                                    56788899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcccchhHHHhHHHHHHH
Q 024531          203 SIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKKNWLIIFWQLLVSL  253 (266)
Q Consensus       203 ~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~  253 (266)
                      .....+...+....++-.+  +.|...+......+..+.|+.|...-.+|-
T Consensus       174 ~~~l~~a~~~~~~~~y~~A--r~~~~~~~~~~~~~A~sL~L~iriak~~gd  222 (250)
T COG3063         174 PALLELARLHYKAGDYAPA--RLYLERYQQRGGAQAESLLLGIRIAKRLGD  222 (250)
T ss_pred             hHHHHHHHHHHhcccchHH--HHHHHHHHhcccccHHHHHHHHHHHHHhcc
Confidence            9888888776555554332  334444555445666688888877666653

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.52  E-value=4.8e-13  Score=114.40  Aligned_cols=106  Identities=20%  Similarity=0.093  Sum_probs=100.6

Q ss_pred             HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhH
Q 024531           81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  160 (266)
Q Consensus        81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~a  160 (266)
                      ..+..+.++|..+...|++..|+..|++++.+.|+...                 +++++|.++...|++++|+..++++
T Consensus        62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~-----------------a~~~lg~~~~~~g~~~~A~~~~~~A  124 (296)
T PRK11189         62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMAD-----------------AYNYLGIYLTQAGNFDAAYEAFDSV  124 (296)
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHH-----------------HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            34677899999999999999999999999999999765                 6999999999999999999999999


Q ss_pred             hcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 024531          161 LGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKS  203 (266)
Q Consensus       161 l~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~  203 (266)
                      ++++|++..+++++|.++...|++++|+.+|++++.++|+++.
T Consensus       125 l~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~  167 (296)
T PRK11189        125 LELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY  167 (296)
T ss_pred             HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            9999999999999999999999999999999999999999974

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.51  E-value=2.1e-13  Score=121.45  Aligned_cols=159  Identities=19%  Similarity=0.199  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhh-chh-HHHH-----H----------HHhhhhhhhhHHH
Q 024531           80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQL-FGK-YRDM-----A----------LAVKNPCHLNMAA  142 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~-~~~-~~~~-----~----------~~l~~~~~~n~a~  142 (266)
                      +.-...+.++|+.+-..|+..+|...|++||.++|...+... .+. ..++     .          ..-...+++|+|.
T Consensus       317 P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~  396 (966)
T KOG4626|consen  317 PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLAS  396 (966)
T ss_pred             CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHH
Confidence            344566777777777778888888888888888876543311 011 1110     0          0112457899999


Q ss_pred             HHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 024531          143 CLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQ  222 (266)
Q Consensus       143 ~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~  222 (266)
                      +|.++|++++|+.+|+.||.++|....++.++|..|-.+|+.+.|+.+|.+|+.++|.-.++..+|+.+++--+...++-
T Consensus       397 i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI  476 (966)
T KOG4626|consen  397 IYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAI  476 (966)
T ss_pred             HHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988777776555


Q ss_pred             HHHHhcccCCCCCCccc
Q 024531          223 KEIYKGIFGPRPEPKQK  239 (266)
Q Consensus       223 ~~~~~k~~~~~~~~~~~  239 (266)
                      .. |+..+-..|+....
T Consensus       477 ~s-Y~~aLklkPDfpdA  492 (966)
T KOG4626|consen  477 QS-YRTALKLKPDFPDA  492 (966)
T ss_pred             HH-HHHHHccCCCCchh
Confidence            54 78888777765554

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.49  E-value=8.4e-13  Score=109.81  Aligned_cols=109  Identities=27%  Similarity=0.299  Sum_probs=96.8

Q ss_pred             HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhH
Q 024531           81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  160 (266)
Q Consensus        81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~a  160 (266)
                      +.+..+++.||.+|+..+|..|+..|.++|...-.+.+             +.+.+|.|+|.|.+-+|+|..|+.+|.+|
T Consensus        79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~d-------------lnavLY~NRAAa~~~l~NyRs~l~Dcs~a  145 (390)
T KOG0551|consen   79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPD-------------LNAVLYTNRAAAQLYLGNYRSALNDCSAA  145 (390)
T ss_pred             HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCcc-------------HHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999998665533             47779999999999999999999999999


Q ss_pred             hcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 024531          161 LGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK  202 (266)
Q Consensus       161 l~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~  202 (266)
                      +.++|.+.++++|-|.|+..+..+++|..+++..+.++-+++
T Consensus       146 l~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K  187 (390)
T KOG0551|consen  146 LKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAK  187 (390)
T ss_pred             HhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence            999999999999999999999998888777777666654433

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.49  E-value=8.8e-13  Score=123.74  Aligned_cols=156  Identities=13%  Similarity=0.037  Sum_probs=119.8

Q ss_pred             HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhh--------hchhHHHHH---------HHhhhhhhhhHHHH
Q 024531           81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQ--------LFGKYRDMA---------LAVKNPCHLNMAAC  143 (266)
Q Consensus        81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~--------~~~~~~~~~---------~~l~~~~~~n~a~~  143 (266)
                      ..+..+...|..++..|++++|+..|++++..+|.....-        ..+...+-.         ..-...+++++|.+
T Consensus       329 ~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~  408 (615)
T TIGR00990       329 KEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQL  408 (615)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            3455677889999999999999999999999998754220        011111111         01124578889999


Q ss_pred             HHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 024531          144 LLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQK  223 (266)
Q Consensus       144 ~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~  223 (266)
                      +..+|++++|+.+|++++.++|++..+++.+|.++..+|++++|+..|++++...|+++.+...++.+...+++..++ .
T Consensus       409 ~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A-~  487 (615)
T TIGR00990       409 HFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEA-I  487 (615)
T ss_pred             HHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHH-H
Confidence            999999999999999999999999999999999999999999999999999999999999988888887777766544 4


Q ss_pred             HHHhcccCCCCCCc
Q 024531          224 EIYKGIFGPRPEPK  237 (266)
Q Consensus       224 ~~~~k~~~~~~~~~  237 (266)
                      ..|.+.+...+...
T Consensus       488 ~~~~~Al~l~p~~~  501 (615)
T TIGR00990       488 EKFDTAIELEKETK  501 (615)
T ss_pred             HHHHHHHhcCCccc
Confidence            45788777665533

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.47  E-value=9e-13  Score=105.97  Aligned_cols=114  Identities=14%  Similarity=0.109  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHH-HHhhC--HHHHHHH
Q 024531           80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACL-LKLKR--YEEAIGQ  156 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~-~~~~~--~~~A~~~  156 (266)
                      +...+.+...|..+...|+++.|+..|.+++.+.|++..                 ++.++|.++ ...|+  +++|...
T Consensus        70 P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~-----------------~~~~lA~aL~~~~g~~~~~~A~~~  132 (198)
T PRK10370         70 PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAE-----------------LYAALATVLYYQAGQHMTPQTREM  132 (198)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHhcCCCCcHHHHHH
Confidence            455667888899999999999999999999999998766                 588999875 67777  5999999


Q ss_pred             HHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024531          157 CSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRL  210 (266)
Q Consensus       157 ~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~  210 (266)
                      ++++++.+|+++.+++.+|.+++.+|+|++|+..|+++++++|.+.+-...+..
T Consensus       133 l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~~  186 (198)
T PRK10370        133 IDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLVES  186 (198)
T ss_pred             HHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHH
Confidence            999999999999999999999999999999999999999999976655544433

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.46  E-value=1.2e-12  Score=99.89  Aligned_cols=114  Identities=6%  Similarity=-0.077  Sum_probs=100.6

Q ss_pred             HHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcC
Q 024531          103 MQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELG  182 (266)
Q Consensus       103 ~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g  182 (266)
                      ...|.++++++|+.                    +.++|.++...|++++|+..|++++.++|.+..+++.+|.++..+|
T Consensus        13 ~~~~~~al~~~p~~--------------------~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g   72 (144)
T PRK15359         13 EDILKQLLSVDPET--------------------VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLK   72 (144)
T ss_pred             HHHHHHHHHcCHHH--------------------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHh
Confidence            46788899998873                    5578999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCc
Q 024531          183 QTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPK  237 (266)
Q Consensus       183 ~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~~~  237 (266)
                      ++++|+..|++++.++|+++.++..++.+....++..++... |.+.+...+...
T Consensus        73 ~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~-~~~Al~~~p~~~  126 (144)
T PRK15359         73 EYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREA-FQTAIKMSYADA  126 (144)
T ss_pred             hHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCCCh
Confidence            999999999999999999999999999998888777665555 777776655433

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=99.46  E-value=1.5e-13  Score=119.62  Aligned_cols=121  Identities=25%  Similarity=0.307  Sum_probs=113.9

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531           82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  161 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al  161 (266)
                      .++.+..+++.+|..++|+.|+..|.+||+++|+...+                 +.|++.++++.+++..|+.++.+|+
T Consensus         3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~-----------------~anRa~a~lK~e~~~~Al~Da~kai   65 (476)
T KOG0376|consen    3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIY-----------------FANRALAHLKVESFGGALHDALKAI   65 (476)
T ss_pred             hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceee-----------------echhhhhheeechhhhHHHHHHhhh
Confidence            46778899999999999999999999999999997763                 8899999999999999999999999


Q ss_pred             cCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 024531          162 GEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVY  219 (266)
Q Consensus       162 ~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~  219 (266)
                      +++|...++|+++|.+++.++++.+|..+|+....+.|+++.+.+.+..|.....++.
T Consensus        66 e~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~  123 (476)
T KOG0376|consen   66 ELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEK  123 (476)
T ss_pred             hcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999987766643

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.44  E-value=2.8e-12  Score=94.02  Aligned_cols=113  Identities=14%  Similarity=0.176  Sum_probs=99.9

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  162 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~  162 (266)
                      .+.++..|..++..|++++|+..|.+++...|++..              ...+++.+|.++.+.|+++.|+..+..++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~   67 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTY--------------APNAHYWLGEAYYAQGKYADAAKAFLAVVK   67 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc--------------cHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            356789999999999999999999999999887432              122688999999999999999999999999


Q ss_pred             CCCCc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024531          163 EDENN---VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELR  209 (266)
Q Consensus       163 l~p~~---~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~  209 (266)
                      .+|++   +.+++.+|.++..+|++++|...+++++...|+++.+...+.
T Consensus        68 ~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~  117 (119)
T TIGR02795        68 KYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQK  117 (119)
T ss_pred             HCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHHh
Confidence            99885   678999999999999999999999999999999987765544

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.44  E-value=8.5e-13  Score=118.37  Aligned_cols=136  Identities=15%  Similarity=0.175  Sum_probs=96.6

Q ss_pred             HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhH
Q 024531           81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  160 (266)
Q Consensus        81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~a  160 (266)
                      ...+.+...||.+--+++++.|++.|++|+.++|...-                 +|..+|.=+....+++.|..+|+.|
T Consensus       419 ~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faY-----------------ayTLlGhE~~~~ee~d~a~~~fr~A  481 (638)
T KOG1126|consen  419 NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAY-----------------AYTLLGHESIATEEFDKAMKSFRKA  481 (638)
T ss_pred             CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccch-----------------hhhhcCChhhhhHHHHhHHHHHHhh
Confidence            44667788899999999999999999999999997433                 4666666666666777777777777


Q ss_pred             hcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 024531          161 LGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRP  234 (266)
Q Consensus       161 l~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~  234 (266)
                      |..+|.+..|||-+|.+|.++++++.|.-.|++|++++|.|..+...++....+.++.+++-. +|.+++-..+
T Consensus       482 l~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~-~~~~A~~ld~  554 (638)
T KOG1126|consen  482 LGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQ-LYEKAIHLDP  554 (638)
T ss_pred             hcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHH-HHHHHHhcCC
Confidence            777777777777777777777777777777777777777776666666666555555544433 3455554433

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.41  E-value=1e-12  Score=104.78  Aligned_cols=115  Identities=28%  Similarity=0.308  Sum_probs=102.9

Q ss_pred             HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhH
Q 024531           81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  160 (266)
Q Consensus        81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~a  160 (266)
                      ..+..+++.|+.+|....|..|+..|.++|...|....+                 +.|+|.||+++++|+.+..+|.+|
T Consensus         8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y-----------------~tnralchlk~~~~~~v~~dcrra   70 (284)
T KOG4642|consen    8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASY-----------------YTNRALCHLKLKHWEPVEEDCRRA   70 (284)
T ss_pred             hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchh-----------------hhhHHHHHHHhhhhhhhhhhHHHH
Confidence            457889999999999999999999999999999997764                 899999999999999999999999


Q ss_pred             hcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHH
Q 024531          161 LGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE-----DKSIARELRLLA  212 (266)
Q Consensus       161 l~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~-----~~~~~~~l~~l~  212 (266)
                      +.++|+..+++|.+|.+......|++|+..++++..+.-.     -.++...|..++
T Consensus        71 lql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak  127 (284)
T KOG4642|consen   71 LQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAK  127 (284)
T ss_pred             HhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence            9999999999999999999999999999999999776322     245666666553

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.38  E-value=1.3e-12  Score=86.81  Aligned_cols=64  Identities=34%  Similarity=0.440  Sum_probs=62.6

Q ss_pred             hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCC
Q 024531          136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELG-QTDAAREDFLKAGKFAP  199 (266)
Q Consensus       136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g-~~~~A~~~~~~al~l~p  199 (266)
                      ++.++|.+++..|+|++|+.+|++++.++|+++.+++++|.++..+| ++++|+++|+++++++|
T Consensus         5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            68899999999999999999999999999999999999999999999 79999999999999998

...

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.38  E-value=2.1e-11  Score=118.41  Aligned_cols=103  Identities=17%  Similarity=0.128  Sum_probs=91.8

Q ss_pred             hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 024531          136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE  215 (266)
Q Consensus       136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  215 (266)
                      ++.++|.++.++|++++|+..+.+++.++|+++.+++++|.++..+|++++|+..|+++++++|+++.++..++.+....
T Consensus       611 a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~l  690 (987)
T PRK09782        611 AYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRL  690 (987)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHHHhcccCCCCCCccc
Q 024531          216 KAVYKKQKEIYKGIFGPRPEPKQK  239 (266)
Q Consensus       216 ~~~~~~~~~~~~k~~~~~~~~~~~  239 (266)
                      ++..++.. .|++.+...++....
T Consensus       691 Gd~~eA~~-~l~~Al~l~P~~a~i  713 (987)
T PRK09782        691 DDMAATQH-YARLVIDDIDNQALI  713 (987)
T ss_pred             CCHHHHHH-HHHHHHhcCCCCchh
Confidence            88766655 478888877755443

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.37  E-value=1.8e-11  Score=118.97  Aligned_cols=131  Identities=6%  Similarity=-0.055  Sum_probs=111.6

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  162 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~  162 (266)
                      ...+...|..+.+.|++++|+..|.+++.+.|++..                 ++.++|.++...|++++|+..++++++
T Consensus       609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~-----------------a~~nLG~aL~~~G~~eeAi~~l~~AL~  671 (987)
T PRK09782        609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSN-----------------YQAALGYALWDSGDIAQSREMLERAHK  671 (987)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            455667788888888888888888888888888655                 699999999999999999999999999


Q ss_pred             CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 024531          163 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFG  231 (266)
Q Consensus       163 l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~  231 (266)
                      ++|+++.+++++|.++..+|++++|+..|++++.++|++..+......+..+....+...+. |...+.
T Consensus       672 l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~-~~r~~~  739 (987)
T PRK09782        672 GLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEE-VGRRWT  739 (987)
T ss_pred             hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHH-HHHHhh
Confidence            99999999999999999999999999999999999999999998888876665555544443 344433

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.36  E-value=3e-11  Score=104.64  Aligned_cols=132  Identities=14%  Similarity=0.128  Sum_probs=105.5

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  162 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~  162 (266)
                      ...+--.|-.+....+-..|+..|.+|++++|.+..                 +++.+|++|--++...=|+-+|++|+.
T Consensus       364 ~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyR-----------------AWYGLGQaYeim~Mh~YaLyYfqkA~~  426 (559)
T KOG1155|consen  364 LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYR-----------------AWYGLGQAYEIMKMHFYALYYFQKALE  426 (559)
T ss_pred             hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHH-----------------HHhhhhHHHHHhcchHHHHHHHHHHHh
Confidence            334444566666666666666666666666666554                 688999999999999999999999999


Q ss_pred             CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 024531          163 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGP  232 (266)
Q Consensus       163 l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~  232 (266)
                      +.|+++..|-.+|.||.++++.++|+++|.+++.....+..+...|+.+++.++..+++..- |.+.+.+
T Consensus       427 ~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~-yek~v~~  495 (559)
T KOG1155|consen  427 LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQY-YEKYVEV  495 (559)
T ss_pred             cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHH-HHHHHHH
Confidence            99999999999999999999999999999999999888888898999998888887766554 6666653

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.36  E-value=1.2e-11  Score=103.57  Aligned_cols=115  Identities=18%  Similarity=0.260  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531           80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  159 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~  159 (266)
                      ...++.+.+.|+.++.+|++..|+.+|..|++.+|++..                 +++.+|.+|+.+|+-.-|+.++.+
T Consensus        35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~-----------------aifrRaT~yLAmGksk~al~Dl~r   97 (504)
T KOG0624|consen   35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQ-----------------AIFRRATVYLAMGKSKAALQDLSR   97 (504)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHH-----------------HHHHHHHHHhhhcCCccchhhHHH
Confidence            345778899999999999999999999999999999655                 689999999999999999999999


Q ss_pred             HhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024531          160 VLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL  211 (266)
Q Consensus       160 al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l  211 (266)
                      +|++.|+..-|...+|.+++++|++++|..+|..+|.-+|++.........+
T Consensus        98 VlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl  149 (504)
T KOG0624|consen   98 VLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKL  149 (504)
T ss_pred             HHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHH
Confidence            9999999999999999999999999999999999999999765555444443

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.36  E-value=1.8e-11  Score=98.37  Aligned_cols=122  Identities=14%  Similarity=0.042  Sum_probs=108.7

Q ss_pred             hccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHH
Q 024531           96 EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRG  175 (266)
Q Consensus        96 ~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g  175 (266)
                      .++.++++..+.+++...|++..                 .+.++|.+|...|++++|+..|++++.++|+++.+++.+|
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~-----------------~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA  114 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSE-----------------QWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALA  114 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHH-----------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            56788999999999999999766                 6999999999999999999999999999999999999999


Q ss_pred             HHH-HHcCC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 024531          176 KAR-AELGQ--TDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPE  235 (266)
Q Consensus       176 ~~~-~~~g~--~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~  235 (266)
                      .++ ...|+  +++|...++++++++|++..++..++......++..++... |++++...+.
T Consensus       115 ~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~-~~~aL~l~~~  176 (198)
T PRK10370        115 TVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIEL-WQKVLDLNSP  176 (198)
T ss_pred             HHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHH-HHHHHhhCCC
Confidence            985 67787  59999999999999999999999999998777777665555 7888876554

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.32  E-value=7.4e-11  Score=97.38  Aligned_cols=115  Identities=17%  Similarity=0.159  Sum_probs=101.2

Q ss_pred             HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhH
Q 024531           81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  160 (266)
Q Consensus        81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~a  160 (266)
                      ..+..+...|..++..|+|+.|+..|.+++...|.++.              ...+++.+|.++...|++++|+..++++
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~--------------~~~a~~~la~~~~~~~~~~~A~~~~~~~   96 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPY--------------AEQAQLDLAYAYYKSGDYAEAIAAADRF   96 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchh--------------HHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            34678899999999999999999999999999998643              2236889999999999999999999999


Q ss_pred             hcCCCCchH---HHHHHHHHHHHc--------CCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024531          161 LGEDENNVK---ALFRRGKARAEL--------GQTDAAREDFLKAGKFAPEDKSIARELR  209 (266)
Q Consensus       161 l~l~p~~~~---a~~~~g~~~~~~--------g~~~~A~~~~~~al~l~p~~~~~~~~l~  209 (266)
                      ++.+|+++.   +++.+|.++...        |++++|+..|++++..+|++..+...+.
T Consensus        97 l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~  156 (235)
T TIGR03302        97 IRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKK  156 (235)
T ss_pred             HHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHH
Confidence            999998876   799999999987        8999999999999999999876654443

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.32  E-value=7.3e-12  Score=112.46  Aligned_cols=150  Identities=15%  Similarity=0.119  Sum_probs=132.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCH
Q 024531           71 RSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRY  150 (266)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~  150 (266)
                      .+..+....+..-++++-.|.+|.++++++.|.-+|++|+.++|.+..                 +....|..+.++|+.
T Consensus       477 ~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsv-----------------i~~~~g~~~~~~k~~  539 (638)
T KOG1126|consen  477 SFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSV-----------------ILCHIGRIQHQLKRK  539 (638)
T ss_pred             HHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchh-----------------HHhhhhHHHHHhhhh
Confidence            444444555677889999999999999999999999999999999655                 578899999999999


Q ss_pred             HHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 024531          151 EEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIF  230 (266)
Q Consensus       151 ~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~  230 (266)
                      ++|+..+++|+.+||.++-..|.+|.+++.+++|++|+..++..-++-|++..+...+++++++.++...+... |--+.
T Consensus       540 d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~-f~~A~  618 (638)
T KOG1126|consen  540 DKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLH-FSWAL  618 (638)
T ss_pred             hHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHh-hHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999888887766655 56666


Q ss_pred             CCCCCCcc
Q 024531          231 GPRPEPKQ  238 (266)
Q Consensus       231 ~~~~~~~~  238 (266)
                      +.+|...+
T Consensus       619 ~ldpkg~~  626 (638)
T KOG1126|consen  619 DLDPKGAQ  626 (638)
T ss_pred             cCCCccch
Confidence            66655443

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.32  E-value=4.6e-11  Score=103.50  Aligned_cols=124  Identities=18%  Similarity=0.107  Sum_probs=116.1

Q ss_pred             hHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchH
Q 024531           90 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVK  169 (266)
Q Consensus        90 g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~  169 (266)
                      ||-+.-+++.+.|+..|++|+.++|....                 ++..+|.-|+.+++...|+..|++|++++|.+..
T Consensus       337 aNYYSlr~eHEKAv~YFkRALkLNp~~~~-----------------aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyR  399 (559)
T KOG1155|consen  337 ANYYSLRSEHEKAVMYFKRALKLNPKYLS-----------------AWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYR  399 (559)
T ss_pred             hhHHHHHHhHHHHHHHHHHHHhcCcchhH-----------------HHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHH
Confidence            88888899999999999999999999544                 7999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 024531          170 ALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFG  231 (266)
Q Consensus       170 a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~  231 (266)
                      |||-+|++|.-++...=|+-+|++|+.+-|+|+.++..|+.|+..+.+..++.+. |++...
T Consensus       400 AWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKC-ykrai~  460 (559)
T KOG1155|consen  400 AWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKC-YKRAIL  460 (559)
T ss_pred             HHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHH-HHHHHh
Confidence            9999999999999999999999999999999999999999999999999888887 455543

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.32  E-value=3e-11  Score=113.28  Aligned_cols=135  Identities=12%  Similarity=0.112  Sum_probs=121.7

Q ss_pred             HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhH
Q 024531           81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  160 (266)
Q Consensus        81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~a  160 (266)
                      ..++.++.+|....+.|.+++|...+..++++.|+...                 +..+++.++.+++++++|+..++++
T Consensus        84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~-----------------a~~~~a~~L~~~~~~eeA~~~~~~~  146 (694)
T PRK15179         84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSE-----------------AFILMLRGVKRQQGIEAGRAEIELY  146 (694)
T ss_pred             ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHH-----------------HHHHHHHHHHHhccHHHHHHHHHHH
Confidence            44677788999999999999999999999999999655                 7999999999999999999999999


Q ss_pred             hcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 024531          161 LGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPR  233 (266)
Q Consensus       161 l~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~  233 (266)
                      +..+|++..+++.+|.++.++|+|++|+..|++++..+|+++.++-.++.+.+..++.+++... |++.+...
T Consensus       147 l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~-~~~a~~~~  218 (694)
T PRK15179        147 FSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDV-LQAGLDAI  218 (694)
T ss_pred             hhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999887777776655444 77776543

>PRK12370 invasion protein regulator; Provisional

Probab=99.32  E-value=4.7e-11  Score=110.65  Aligned_cols=92  Identities=10%  Similarity=-0.076  Sum_probs=47.5

Q ss_pred             hccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHH
Q 024531           96 EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRG  175 (266)
Q Consensus        96 ~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g  175 (266)
                      .+++++|+..+.++++++|++..                 ++..+|.++...|++++|+..|+++++++|+++.+++.+|
T Consensus       317 ~~~~~~A~~~~~~Al~ldP~~~~-----------------a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg  379 (553)
T PRK12370        317 QNAMIKAKEHAIKATELDHNNPQ-----------------ALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYG  379 (553)
T ss_pred             chHHHHHHHHHHHHHhcCCCCHH-----------------HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            34455555555555555555433                 3444555555555555555555555555555555555555


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 024531          176 KARAELGQTDAAREDFLKAGKFAPEDKSI  204 (266)
Q Consensus       176 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~  204 (266)
                      .++..+|++++|+..|+++++++|.++.+
T Consensus       380 ~~l~~~G~~~eAi~~~~~Al~l~P~~~~~  408 (553)
T PRK12370        380 WNLFMAGQLEEALQTINECLKLDPTRAAA  408 (553)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhcCCCChhh
Confidence            55555555555555555555555554433

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.31  E-value=3.7e-11  Score=94.57  Aligned_cols=109  Identities=20%  Similarity=0.160  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHH
Q 024531           79 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS  158 (266)
Q Consensus        79 ~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~  158 (266)
                      ....+..+...|..+...|++++|+..|.+++...|+...              ...++.++|.++..+|++++|+..+.
T Consensus        31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--------------~~~~~~~la~~~~~~g~~~~A~~~~~   96 (172)
T PRK02603         31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPND--------------RSYILYNMGIIYASNGEHDKALEYYH   96 (172)
T ss_pred             HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccch--------------HHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            4566778899999999999999999999999998765321              12368999999999999999999999


Q ss_pred             hHhcCCCCchHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhhCCCC
Q 024531          159 LVLGEDENNVKALFRRGKARAELGQ--------------TDAAREDFLKAGKFAPED  201 (266)
Q Consensus       159 ~al~l~p~~~~a~~~~g~~~~~~g~--------------~~~A~~~~~~al~l~p~~  201 (266)
                      +++..+|.+..++..+|.++..+|+              +++|++.+++++.++|++
T Consensus        97 ~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603         97 QALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence            9999999999999999999999998              678888888888888876

>PRK12370 invasion protein regulator; Provisional

Probab=99.31  E-value=4.6e-11  Score=110.72  Aligned_cols=116  Identities=11%  Similarity=-0.116  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHH
Q 024531           99 LEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKAR  178 (266)
Q Consensus        99 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~  178 (266)
                      +++|+..|+++++++|++..                 +++++|.++...|++++|+..++++++++|.++.+++.++.++
T Consensus       354 ~~~A~~~~~~Al~l~P~~~~-----------------a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~  416 (553)
T PRK12370        354 YIVGSLLFKQANLLSPISAD-----------------IKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWIT  416 (553)
T ss_pred             HHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence            67899999999999999765                 6899999999999999999999999999999998888888888


Q ss_pred             HHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 024531          179 AELGQTDAAREDFLKAGKFA-PEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGP  232 (266)
Q Consensus       179 ~~~g~~~~A~~~~~~al~l~-p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~  232 (266)
                      +..|++++|+..+++++..+ |+++.++..++.+...+++..++... +.++...
T Consensus       417 ~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~-~~~~~~~  470 (553)
T PRK12370        417 YYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKL-TKEISTQ  470 (553)
T ss_pred             HhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHH-HHHhhhc
Confidence            89999999999999999875 78898888899888777777665555 5666533

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.30  E-value=1.4e-11  Score=80.79  Aligned_cols=64  Identities=25%  Similarity=0.381  Sum_probs=60.4

Q ss_pred             hHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 024531          139 NMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK  202 (266)
Q Consensus       139 n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~  202 (266)
                      .+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|++++.++|+|+
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            5789999999999999999999999999999999999999999999999999999999999986

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.30  E-value=3.9e-11  Score=90.31  Aligned_cols=117  Identities=14%  Similarity=0.054  Sum_probs=102.4

Q ss_pred             HHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCC
Q 024531          104 QQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQ  183 (266)
Q Consensus       104 ~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~  183 (266)
                      ..|.+++...|+...                 ++..+|.++...|++.+|+..+++++..+|.++.+++++|.++..+|+
T Consensus         4 ~~~~~~l~~~p~~~~-----------------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~   66 (135)
T TIGR02552         4 ATLKDLLGLDSEQLE-----------------QIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKE   66 (135)
T ss_pred             hhHHHHHcCChhhHH-----------------HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence            468889999888544                 588999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcc
Q 024531          184 TDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQ  238 (266)
Q Consensus       184 ~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~~~~  238 (266)
                      +++|...|++++.++|++......++.+....++..++.+ .|...+...+....
T Consensus        67 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~p~~~~  120 (135)
T TIGR02552        67 YEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALK-ALDLAIEICGENPE  120 (135)
T ss_pred             HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhccccch
Confidence            9999999999999999999999999999877776655544 47888776665443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.29  E-value=5.7e-11  Score=82.00  Aligned_cols=99  Identities=32%  Similarity=0.401  Sum_probs=90.4

Q ss_pred             HHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCC
Q 024531           85 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED  164 (266)
Q Consensus        85 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~  164 (266)
                      .+...|..++..|++.+|+..+.+++...|....                 ++.++|.++...+++++|+..+++++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~   64 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNAD-----------------AYYNLAAAYYKLGKYEEALEDYEKALELD   64 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            3567899999999999999999999999887543                 58899999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 024531          165 ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE  200 (266)
Q Consensus       165 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~  200 (266)
                      |.+..+++.+|.++..+|++++|...+.+++..+|.
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          65 PDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN  100 (100)
T ss_pred             CcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence            999999999999999999999999999999998874

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.29  E-value=1.5e-10  Score=93.98  Aligned_cols=129  Identities=16%  Similarity=0.106  Sum_probs=88.2

Q ss_pred             HHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCC-
Q 024531           86 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED-  164 (266)
Q Consensus        86 ~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~-  164 (266)
                      +...|..++..|++++|+..|.+++...|...                 .++.++|.++...|++++|+..+.+++... 
T Consensus        68 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-----------------~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~  130 (234)
T TIGR02521        68 YLALALYYQQLGELEKAEDSFRRALTLNPNNG-----------------DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL  130 (234)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----------------HHHHHHHHHHHHcccHHHHHHHHHHHHhccc
Confidence            33444444444444444444444444444322                 257788888888888888888888888753 


Q ss_pred             -CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 024531          165 -ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGP  232 (266)
Q Consensus       165 -p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~  232 (266)
                       |.....++.+|.++...|++++|...|.+++..+|++..+...+..+....++..++.. .+.+....
T Consensus       131 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~-~~~~~~~~  198 (234)
T TIGR02521       131 YPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA-YLERYQQT  198 (234)
T ss_pred             cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHH-HHHHHHHh
Confidence             44566788888888888888888888888888888888888778877666666554443 35665554

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK15331 chaperone protein SicA; Provisional

Probab=99.28  E-value=1.3e-10  Score=88.70  Aligned_cols=109  Identities=17%  Similarity=0.229  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531           80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  159 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~  159 (266)
                      .+..+..+..|-.+|+.|++++|...|+-...++|.+..+                 ...+|.|+..+++|++|+..|..
T Consensus        34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y-----------------~~GLaa~~Q~~k~y~~Ai~~Y~~   96 (165)
T PRK15331         34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDY-----------------TMGLAAVCQLKKQFQKACDLYAV   96 (165)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHH-----------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456788899999999999999999999999999988774                 78999999999999999999999


Q ss_pred             HhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 024531          160 VLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIAR  206 (266)
Q Consensus       160 al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~  206 (266)
                      +..++++++...|..|.|+..+|+.+.|+.+|..++. .|.+..++.
T Consensus        97 A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~  142 (165)
T PRK15331         97 AFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRA  142 (165)
T ss_pred             HHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHH
Confidence            9999999999999999999999999999999999998 566655544

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.28  E-value=8.4e-11  Score=102.51  Aligned_cols=108  Identities=21%  Similarity=0.161  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531           80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  159 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~  159 (266)
                      ...+..+.-.|..+|-.|++-.|...++++|.++|....                 +|..+|.+|+..++..+-..+|++
T Consensus       323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-----------------lyI~~a~~y~d~~~~~~~~~~F~~  385 (606)
T KOG0547|consen  323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-----------------LYIKRAAAYADENQSEKMWKDFNK  385 (606)
T ss_pred             HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccch-----------------HHHHHHHHHhhhhccHHHHHHHHH
Confidence            455888889999999999999999999999999998554                 355555555555555555555555


Q ss_pred             HhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 024531          160 VLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSI  204 (266)
Q Consensus       160 al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~  204 (266)
                      |..+||.|+..||.+|+.++-+++|++|+.+|+++++++|+|.-.
T Consensus       386 A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~  430 (606)
T KOG0547|consen  386 AEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYA  430 (606)
T ss_pred             HHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHH
Confidence            555555555555555555555555555555555555555555433

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.28  E-value=8.1e-11  Score=100.67  Aligned_cols=125  Identities=14%  Similarity=-0.008  Sum_probs=103.0

Q ss_pred             ccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHH
Q 024531           97 EKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGK  176 (266)
Q Consensus        97 g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~  176 (266)
                      ++.+.++..+.++|...|-+...             ....++++|.+|...|++++|+..|+++++++|+++.+++.+|.
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~-------------~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~  106 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEE-------------RAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGI  106 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHh-------------hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            35677888888888754432211             23369999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 024531          177 ARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPE  235 (266)
Q Consensus       177 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~  235 (266)
                      ++..+|++++|+..|+++++++|++..+...++.+....++..++.+ .+++.+...|.
T Consensus       107 ~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~-~~~~al~~~P~  164 (296)
T PRK11189        107 YLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQD-DLLAFYQDDPN  164 (296)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHhCCC
Confidence            99999999999999999999999999999999988766666655544 46676665444

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.27  E-value=2.5e-10  Score=92.60  Aligned_cols=136  Identities=21%  Similarity=0.185  Sum_probs=110.8

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531           82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  161 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al  161 (266)
                      .+..+...|..++..|++++|+..|.+++...|....                 ++..+|.++...|++++|+..+++++
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~-----------------~~~~la~~~~~~~~~~~A~~~~~~al   92 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYL-----------------AYLALALYYQQLGELEKAEDSFRRAL   92 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4667788899999999999999999999998887544                 58889999999999999999999999


Q ss_pred             cCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 024531          162 GEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFA--PEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPE  235 (266)
Q Consensus       162 ~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~  235 (266)
                      ..+|.+..+++++|.++..+|++++|+..|++++...  |........++.+....++..++. ..+.+.+...+.
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~  167 (234)
T TIGR02521        93 TLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAE-KYLTRALQIDPQ  167 (234)
T ss_pred             hhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCcC
Confidence            9999999999999999999999999999999999854  445666777777766666655444 446666655443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.27  E-value=5.5e-12  Score=85.20  Aligned_cols=58  Identities=33%  Similarity=0.556  Sum_probs=54.2

Q ss_pred             ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeec
Q 024531            2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF   62 (266)
Q Consensus         2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~   62 (266)
                      .+|.+ +||.|+|.++.+|..||++..+|+|.|+||..|.  +..||||+.+.|+++|..+
T Consensus        50 ~IGkg-eVIkGwdegv~qmsvGekakLti~pd~aYG~~G~--p~~IppNatL~FdVEll~v  107 (108)
T KOG0544|consen   50 KIGKG-EVIKGWDEGVAQMSVGEKAKLTISPDYAYGPRGH--PGGIPPNATLVFDVELLKV  107 (108)
T ss_pred             EecCc-ceeechhhcchhccccccceeeeccccccCCCCC--CCccCCCcEEEEEEEEEec
Confidence            37888 8999999999999999999999999999999996  7789999999999999865

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.25  E-value=3.3e-11  Score=83.26  Aligned_cols=83  Identities=24%  Similarity=0.315  Sum_probs=72.3

Q ss_pred             hccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHH
Q 024531           96 EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRG  175 (266)
Q Consensus        96 ~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g  175 (266)
                      +|+|+.|+..|.+++...|.+..               ...++++|.||++.|+|++|+..+++ +..+|.+...++.+|
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~---------------~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a   65 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPN---------------SAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLA   65 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHH---------------HHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChh---------------HHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHH
Confidence            68999999999999999995311               11467799999999999999999999 899999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHH
Q 024531          176 KARAELGQTDAAREDFLKA  194 (266)
Q Consensus       176 ~~~~~~g~~~~A~~~~~~a  194 (266)
                      .|+..+|+|++|+..|+++
T Consensus        66 ~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   66 RCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHhcC
Confidence            9999999999999999875

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.25  E-value=1.3e-10  Score=109.62  Aligned_cols=128  Identities=16%  Similarity=0.076  Sum_probs=94.0

Q ss_pred             HhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHH----HHHHHHhHhcCC
Q 024531           89 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEE----AIGQCSLVLGED  164 (266)
Q Consensus        89 ~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~----A~~~~~~al~l~  164 (266)
                      .|..++..|++++|+..|.+++...|++..                 ++.++|.++...|++++    |+..|++++.++
T Consensus       218 l~~~l~~~g~~~eA~~~~~~al~~~p~~~~-----------------~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~  280 (656)
T PRK15174        218 AVDTLCAVGKYQEAIQTGESALARGLDGAA-----------------LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN  280 (656)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCCCHH-----------------HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence            456667777788888888888777776544                 57778888888887775    677888888888


Q ss_pred             CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 024531          165 ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRP  234 (266)
Q Consensus       165 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~  234 (266)
                      |+++.++..+|.++..+|++++|+..+++++.++|+++.+...+..+....++..++... |.++....+
T Consensus       281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~-l~~al~~~P  349 (656)
T PRK15174        281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDE-FVQLAREKG  349 (656)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH-HHHHHHhCc
Confidence            888888888888888888888888888888888888887777777776666666544443 566655433

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.23  E-value=2.6e-10  Score=89.35  Aligned_cols=109  Identities=20%  Similarity=0.105  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531           80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  159 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~  159 (266)
                      ...+..+...|..++..|+|++|+..|.+++.+.|+...              ...++.|+|.++...|++++|+..|.+
T Consensus        32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~--------------~~~~~~~lg~~~~~~g~~~eA~~~~~~   97 (168)
T CHL00033         32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYD--------------RSYILYNIGLIHTSNGEHTKALEYYFQ   97 (168)
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchh--------------hHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            346788899999999999999999999999998765322              222689999999999999999999999


Q ss_pred             HhcCCCCchHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHhhCCCCH
Q 024531          160 VLGEDENNVKALFRRGKARA-------ELGQTD-------AAREDFLKAGKFAPEDK  202 (266)
Q Consensus       160 al~l~p~~~~a~~~~g~~~~-------~~g~~~-------~A~~~~~~al~l~p~~~  202 (266)
                      ++.++|.+..++..+|.++.       .+|+++       +|...|++++..+|++.
T Consensus        98 Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033         98 ALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             HHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            99999999999999999999       777766       66666677888888653

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.23  E-value=1.7e-10  Score=108.87  Aligned_cols=132  Identities=16%  Similarity=0.169  Sum_probs=98.3

Q ss_pred             HHHHHHHhHHHHhhccHHH----HHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHH
Q 024531           83 ADRRKMDGNALFKEEKLEE----AMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS  158 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~----A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~  158 (266)
                      ...+...|..++..|++++    |+..|.+++...|++..                 ++.++|.++...|++++|+..++
T Consensus       246 ~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~-----------------a~~~lg~~l~~~g~~~eA~~~l~  308 (656)
T PRK15174        246 AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVR-----------------IVTLYADALIRTGQNEKAIPLLQ  308 (656)
T ss_pred             HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHH-----------------HHHHHHHHHHHCCCHHHHHHHHH
Confidence            4455678888899999885    78999999999988654                 57888888888888888888888


Q ss_pred             hHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 024531          159 LVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGP  232 (266)
Q Consensus       159 ~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~  232 (266)
                      +++.++|+++.+++.+|.++..+|++++|+..|++++..+|++..+...+..+....++..++. ..|.+.+..
T Consensus       309 ~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~-~~l~~al~~  381 (656)
T PRK15174        309 QSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAE-SVFEHYIQA  381 (656)
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHH-HHHHHHHHh
Confidence            8888888888888888888888888888888888888888887665544444443333333322 234444433

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.22  E-value=2.3e-10  Score=92.80  Aligned_cols=127  Identities=17%  Similarity=0.134  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531           80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  159 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~  159 (266)
                      ......+...|...+..|+|..|+..+.++....|++..                 +++.+|.+|.+.|+++.|...|.+
T Consensus        97 ~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~-----------------~~~~lgaaldq~Gr~~~Ar~ay~q  159 (257)
T COG5010          97 PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWE-----------------AWNLLGAALDQLGRFDEARRAYRQ  159 (257)
T ss_pred             cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChh-----------------hhhHHHHHHHHccChhHHHHHHHH
Confidence            334455666999999999999999999999999999877                 699999999999999999999999


Q ss_pred             HhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 024531          160 VLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQK  223 (266)
Q Consensus       160 al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~  223 (266)
                      ++++.|+++.+..++|..+.-.|+++.|...+..+....+.+..+..+|..+-..+.....++.
T Consensus       160 Al~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~  223 (257)
T COG5010         160 ALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAED  223 (257)
T ss_pred             HHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHh
Confidence            9999999999999999999999999999999999999988899999999999777777655544

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.22  E-value=4.1e-11  Score=79.46  Aligned_cols=66  Identities=29%  Similarity=0.349  Sum_probs=62.3

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhh-CHHHHHHHHHhHh
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK-RYEEAIGQCSLVL  161 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~-~~~~A~~~~~~al  161 (266)
                      +..+...|..++..|+|++|+..|.++++++|++..                 +++++|.||..+| ++.+|+.++++++
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~-----------------~~~~~g~~~~~~~~~~~~A~~~~~~al   65 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAE-----------------AYYNLGLAYMKLGKDYEEAIEDFEKAL   65 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHH-----------------HHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH-----------------HHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence            678899999999999999999999999999999655                 7999999999999 7999999999999


Q ss_pred             cCCC
Q 024531          162 GEDE  165 (266)
Q Consensus       162 ~l~p  165 (266)
                      +++|
T Consensus        66 ~l~P   69 (69)
T PF13414_consen   66 KLDP   69 (69)
T ss_dssp             HHST
T ss_pred             HcCc
Confidence            9998

...

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.22  E-value=9.5e-11  Score=96.76  Aligned_cols=100  Identities=22%  Similarity=0.206  Sum_probs=94.5

Q ss_pred             hhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 024531          137 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEK  216 (266)
Q Consensus       137 ~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~  216 (266)
                      +-+-|.-+++.++|.+|+..|++||.++|.|+-.|+++|.+|.++|+|+.|+++++.|+.+||....++.-|...+-.+.
T Consensus        84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~g  163 (304)
T KOG0553|consen   84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALG  163 (304)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccC
Confidence            56788889999999999999999999999999999999999999999999999999999999999999999999998899


Q ss_pred             HHHHHHHHHHhcccCCCCCCc
Q 024531          217 AVYKKQKEIYKGIFGPRPEPK  237 (266)
Q Consensus       217 ~~~~~~~~~~~k~~~~~~~~~  237 (266)
                      +.+++.+. |+|.+.+.|.+.
T Consensus       164 k~~~A~~a-ykKaLeldP~Ne  183 (304)
T KOG0553|consen  164 KYEEAIEA-YKKALELDPDNE  183 (304)
T ss_pred             cHHHHHHH-HHhhhccCCCcH
Confidence            99888877 999999988877

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.19  E-value=7e-10  Score=92.73  Aligned_cols=114  Identities=13%  Similarity=0.144  Sum_probs=98.1

Q ss_pred             HHHHHHhHHH-HhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531           84 DRRKMDGNAL-FKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  162 (266)
Q Consensus        84 ~~~~~~g~~~-~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~  162 (266)
                      ...+..|..+ +..|+|++|+..|...+...|++..              ...+++.+|.+|+..|++++|+..|.+++.
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~--------------a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~  208 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTY--------------QPNANYWLGQLNYNKGKKDDAAYYFASVVK  208 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcc--------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4556777766 6679999999999999999998642              223789999999999999999999999998


Q ss_pred             CCCCc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024531          163 EDENN---VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL  211 (266)
Q Consensus       163 l~p~~---~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l  211 (266)
                      ..|++   +.+++.+|.++..+|++++|...|+++++..|++..+.....++
T Consensus       209 ~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL  260 (263)
T PRK10803        209 NYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRL  260 (263)
T ss_pred             HCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence            88874   67899999999999999999999999999999988776555443

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.19  E-value=1.8e-10  Score=102.01  Aligned_cols=116  Identities=23%  Similarity=0.241  Sum_probs=89.7

Q ss_pred             HHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCC
Q 024531           87 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDEN  166 (266)
Q Consensus        87 ~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~  166 (266)
                      ++.|.+.|..+.|.+|+..|+.++...+.....          .....+...|+|.++.+++.+.+|+.+++++|.+.|.
T Consensus       418 ~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e----------~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k  487 (611)
T KOG1173|consen  418 HELGVVAYTYEEYPEALKYFQKALEVIKSVLNE----------KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK  487 (611)
T ss_pred             hhhhheeehHhhhHHHHHHHHHHHHHhhhcccc----------ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence            444555555555555555555555332221000          0023456899999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024531          167 NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLA  212 (266)
Q Consensus       167 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  212 (266)
                      ++..|..+|.+|..+|+++.|++.|.++|.++|+|.-+...|+...
T Consensus       488 ~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai  533 (611)
T KOG1173|consen  488 DASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI  533 (611)
T ss_pred             chhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988887777543

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=99.17  E-value=1.4e-10  Score=97.66  Aligned_cols=157  Identities=27%  Similarity=0.344  Sum_probs=132.5

Q ss_pred             CHHHHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhh-hchhH-HHHHHHhhhhhhhhHHHHHHHhhCHHH
Q 024531           75 TVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQ-LFGKY-RDMALAVKNPCHLNMAACLLKLKRYEE  152 (266)
Q Consensus        75 ~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~n~a~~~~~~~~~~~  152 (266)
                      .........+..++.|+..|+.++|..|...|.++++.....+... ..... ...........+.|++.|-++.+.+..
T Consensus       214 ~~~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~  293 (372)
T KOG0546|consen  214 DFDKALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGG  293 (372)
T ss_pred             ccchhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCc
Confidence            4445567788889999999999999999999999998765311110 01111 122445566678999999999999999


Q ss_pred             HHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 024531          153 AIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFG  231 (266)
Q Consensus       153 A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~  231 (266)
                      |+..+..+++.++...+++|+++.++..+.++++|++++..+....|++..+...+....+..+.++..++..+.+||.
T Consensus       294 a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~~~~~~~~~k~~s  372 (372)
T KOG0546|consen  294 ARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYNRKQKKALSKMFS  372 (372)
T ss_pred             ceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHHHHHHHHHHhhcC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999898888888873

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.17  E-value=1.5e-10  Score=98.14  Aligned_cols=130  Identities=18%  Similarity=0.100  Sum_probs=94.3

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  162 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~  162 (266)
                      ...+...|..+.+.|++++|+..|+++++..|++..                 +...++.++...|+++++...+.....
T Consensus       146 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~-----------------~~~~l~~~li~~~~~~~~~~~l~~~~~  208 (280)
T PF13429_consen  146 ARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPD-----------------ARNALAWLLIDMGDYDEAREALKRLLK  208 (280)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HH-----------------HHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH-----------------HHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence            345567788888899999999999999999998665                 577788888888998888888877777


Q ss_pred             CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 024531          163 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIF  230 (266)
Q Consensus       163 l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~  230 (266)
                      ..|.++..+..+|.++..+|++++|+..|++++..+|+|+.++..++.+....++..++.+- +++++
T Consensus       209 ~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~-~~~~~  275 (280)
T PF13429_consen  209 AAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRL-RRQAL  275 (280)
T ss_dssp             H-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred             HCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccc-ccccc
Confidence            77888888889999999999999999999999999999999999999887776666544433 44444

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.16  E-value=2.7e-09  Score=99.07  Aligned_cols=135  Identities=16%  Similarity=0.138  Sum_probs=122.6

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531           82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  161 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al  161 (266)
                      .+..+..+||.+|..|++++|...+.++|..+|....                 +|+-+|.+|-.+|+..+|+...-.|-
T Consensus       138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~-----------------ay~tL~~IyEqrGd~eK~l~~~llAA  200 (895)
T KOG2076|consen  138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPI-----------------AYYTLGEIYEQRGDIEKALNFWLLAA  200 (895)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchh-----------------hHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            3778889999999999999999999999999999665                 69999999999999999999999999


Q ss_pred             cCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 024531          162 GEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRP  234 (266)
Q Consensus       162 ~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~  234 (266)
                      .++|.+..-|.+++....++|++.+|.-+|.+|++.+|.|-.....-..+.+..+....+..- |.++|...|
T Consensus       201 HL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~-f~~l~~~~p  272 (895)
T KOG2076|consen  201 HLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMET-FLQLLQLDP  272 (895)
T ss_pred             hcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHH-HHHHHhhCC
Confidence            999999999999999999999999999999999999999988888888888877777666555 778887666

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.14  E-value=1e-09  Score=106.04  Aligned_cols=133  Identities=22%  Similarity=0.167  Sum_probs=104.7

Q ss_pred             HHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcC
Q 024531           84 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE  163 (266)
Q Consensus        84 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l  163 (266)
                      ......|..+...|++++|+..+.+++...|++..                 +++++|.++...|++++|+..|++++..
T Consensus       737 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~-----------------~~~~la~~~~~~g~~~~A~~~~~~~~~~  799 (899)
T TIGR02917       737 QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAV-----------------LRTALAELYLAQKDYDKAIKHYRTVVKK  799 (899)
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence            34556788888888889999888888888887554                 5778888888888888888888888888


Q ss_pred             CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 024531          164 DENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPE  235 (266)
Q Consensus       164 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~  235 (266)
                      +|+++.++..+|.++...|+ .+|+..+++++.+.|+++.+...++.+....++..++.. .|++++...+.
T Consensus       800 ~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~-~~~~a~~~~~~  869 (899)
T TIGR02917       800 APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALP-LLRKAVNIAPE  869 (899)
T ss_pred             CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHH-HHHHHHhhCCC
Confidence            88888888888888888888 778888888888888888888777777666655554444 57777776554

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PLN02789 farnesyltranstransferase

Probab=99.13  E-value=2.7e-09  Score=91.84  Aligned_cols=144  Identities=13%  Similarity=0.041  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHhHHHHhhc-cHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCH--HHHHHH
Q 024531           80 IGAADRRKMDGNALFKEE-KLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRY--EEAIGQ  156 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g-~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~--~~A~~~  156 (266)
                      +.....+..+|..+...| ++.+|+..+.+++..+|.+..                 ++.+++.++.+++..  .+++.+
T Consensus        68 P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyq-----------------aW~~R~~~l~~l~~~~~~~el~~  130 (320)
T PLN02789         68 PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQ-----------------IWHHRRWLAEKLGPDAANKELEF  130 (320)
T ss_pred             chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchH-----------------HhHHHHHHHHHcCchhhHHHHHH
Confidence            334455566677777766 567777777777777777544                 688999999888874  788999


Q ss_pred             HHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH---HH---HHHHHHHHHhccc
Q 024531          157 CSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE---KA---VYKKQKEIYKGIF  230 (266)
Q Consensus       157 ~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~---~~---~~~~~~~~~~k~~  230 (266)
                      ++++++++|.|..+|..+|.++..+|+|++|++++.++++++|.|..+......+....   ..   ..+++-.+..++.
T Consensus       131 ~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI  210 (320)
T PLN02789        131 TRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAI  210 (320)
T ss_pred             HHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998888765432   11   1234445554555


Q ss_pred             CCCCCCcccchh
Q 024531          231 GPRPEPKQKKNW  242 (266)
Q Consensus       231 ~~~~~~~~~~~~  242 (266)
                      ...|.+  .++|
T Consensus       211 ~~~P~N--~SaW  220 (320)
T PLN02789        211 LANPRN--ESPW  220 (320)
T ss_pred             HhCCCC--cCHH
Confidence            444332  3555

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.13  E-value=8.8e-10  Score=110.35  Aligned_cols=127  Identities=15%  Similarity=0.111  Sum_probs=75.0

Q ss_pred             HHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCc
Q 024531           88 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN  167 (266)
Q Consensus        88 ~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~  167 (266)
                      ..|..++..|++++|+..|++++...|++..                 ++..+|.++.+.|++++|+.+++++++++|++
T Consensus       274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~-----------------a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~  336 (1157)
T PRK11447        274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSE-----------------ALGALGQAYSQQGDRARAVAQFEKALALDPHS  336 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence            4588889999999999999999999998654                 35555555555555555555555555555543


Q ss_pred             hH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 024531          168 VK--------------ALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGP  232 (266)
Q Consensus       168 ~~--------------a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~  232 (266)
                      ..              ....+|.++...|++++|+..|++++.++|++..+...++.+...+++..++.+. |++++..
T Consensus       337 ~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~-y~~aL~~  414 (1157)
T PRK11447        337 SNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERY-YQQALRM  414 (1157)
T ss_pred             cchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH-HHHHHHh
Confidence            32              1123344555555555555555555555555555555555554444443333322 4444443

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.12  E-value=2e-09  Score=104.00  Aligned_cols=136  Identities=24%  Similarity=0.286  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531           80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  159 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~  159 (266)
                      ...+..+...|..++..|++++|+..|.+++...|....                 ++..+|.++...|++++|+..+++
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----------------~~~~la~~~~~~~~~~~A~~~~~~  184 (899)
T TIGR02917       122 EGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLY-----------------AKLGLAQLALAENRFDEARALIDE  184 (899)
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh-----------------hHHHHHHHHHHCCCHHHHHHHHHH
Confidence            345667788999999999999999999999999987654                 577888888888888888888888


Q ss_pred             HhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 024531          160 VLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPR  233 (266)
Q Consensus       160 al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~  233 (266)
                      ++..+|.+..+++.+|.++...|++++|...|++++.++|++..+...+..+....++..++. ..+..+....
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~-~~~~~~~~~~  257 (899)
T TIGR02917       185 VLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAE-KHADALLKKA  257 (899)
T ss_pred             HHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhC
Confidence            888888888888888888888888888888888888888888877777777665555544433 3345554433

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.12  E-value=1.3e-10  Score=103.08  Aligned_cols=101  Identities=21%  Similarity=0.234  Sum_probs=93.9

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  162 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~  162 (266)
                      .+.+..+|..|+-.|+|++|++.|+.||...|++..                 +++.+|.++..-.+..+|+..|++||.
T Consensus       430 pdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~-----------------lWNRLGAtLAN~~~s~EAIsAY~rALq  492 (579)
T KOG1125|consen  430 PDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYL-----------------LWNRLGATLANGNRSEEAISAYNRALQ  492 (579)
T ss_pred             hhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHH-----------------HHHHhhHHhcCCcccHHHHHHHHHHHh
Confidence            445567899999999999999999999999999766                 588899999999999999999999999


Q ss_pred             CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 024531          163 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE  200 (266)
Q Consensus       163 l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~  200 (266)
                      +.|.++.+.|++|.+++.+|.|.+|.++|-.||.+.+.
T Consensus       493 LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  493 LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK  530 (579)
T ss_pred             cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence            99999999999999999999999999999999999876

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.12  E-value=2.2e-09  Score=88.56  Aligned_cols=131  Identities=12%  Similarity=-0.049  Sum_probs=107.8

Q ss_pred             HHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHh--------hCHHHHHH
Q 024531           84 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKL--------KRYEEAIG  155 (266)
Q Consensus        84 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~--------~~~~~A~~  155 (266)
                      ..+...|..++..|++++|+..|.++++..|++..              ...+++.+|.++...        |++++|+.
T Consensus        71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~--------------~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~  136 (235)
T TIGR03302        71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPD--------------ADYAYYLRGLSNYNQIDRVDRDQTAAREAFE  136 (235)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc--------------hHHHHHHHHHHHHHhcccccCCHHHHHHHHH
Confidence            45678899999999999999999999999997654              122578889999876        88999999


Q ss_pred             HHHhHhcCCCCchHH-----------------HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHH
Q 024531          156 QCSLVLGEDENNVKA-----------------LFRRGKARAELGQTDAAREDFLKAGKFAPED---KSIARELRLLAEHE  215 (266)
Q Consensus       156 ~~~~al~l~p~~~~a-----------------~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~l~~l~~~~  215 (266)
                      .+++++..+|++..+                 .+.+|.+|+..|++.+|+..|++++...|++   +.++..+..+...+
T Consensus       137 ~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~l  216 (235)
T TIGR03302       137 AFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKL  216 (235)
T ss_pred             HHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHc
Confidence            999999999998643                 2467899999999999999999999997765   57888888887777


Q ss_pred             HHHHHHHHHHHhcc
Q 024531          216 KAVYKKQKEIYKGI  229 (266)
Q Consensus       216 ~~~~~~~~~~~~k~  229 (266)
                      ++..+... .+..+
T Consensus       217 g~~~~A~~-~~~~l  229 (235)
T TIGR03302       217 GLKDLAQD-AAAVL  229 (235)
T ss_pred             CCHHHHHH-HHHHH
Confidence            77665554 34443

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.12  E-value=4.2e-10  Score=75.36  Aligned_cols=70  Identities=23%  Similarity=0.330  Sum_probs=65.2

Q ss_pred             HHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024531          141 AACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRL  210 (266)
Q Consensus       141 a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~  210 (266)
                      ..+|+..++|+.|+.++++++.++|+++..++.+|.++..+|+|.+|+.+|+++++.+|+++.+......
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence            5678999999999999999999999999999999999999999999999999999999999888765543

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.11  E-value=1.7e-09  Score=108.38  Aligned_cols=130  Identities=18%  Similarity=0.137  Sum_probs=100.0

Q ss_pred             HHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCC
Q 024531           87 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDEN  166 (266)
Q Consensus        87 ~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~  166 (266)
                      ...|..++..|++++|+..|++++...|.+..                 ++.++|.++...|++++|+..|+++++++|+
T Consensus       355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~-----------------a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~  417 (1157)
T PRK11447        355 IQQGDAALKANNLAQAERLYQQARQVDNTDSY-----------------AVLGLGDVAMARKDYAAAERYYQQALRMDPG  417 (1157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            45688888999999999999999999988654                 5778888888888888888888888888888


Q ss_pred             chHHHHHHH------------------------------------------HHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 024531          167 NVKALFRRG------------------------------------------KARAELGQTDAAREDFLKAGKFAPEDKSI  204 (266)
Q Consensus       167 ~~~a~~~~g------------------------------------------~~~~~~g~~~~A~~~~~~al~l~p~~~~~  204 (266)
                      +..++..++                                          .++...|++++|+..|+++++++|+++.+
T Consensus       418 ~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~  497 (1157)
T PRK11447        418 NTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWL  497 (1157)
T ss_pred             CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence            776655443                                          33446788888888888888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 024531          205 ARELRLLAEHEKAVYKKQKEIYKGIFGPRP  234 (266)
Q Consensus       205 ~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~  234 (266)
                      ...+..+....++..++... +++++...+
T Consensus       498 ~~~LA~~~~~~G~~~~A~~~-l~~al~~~P  526 (1157)
T PRK11447        498 TYRLAQDLRQAGQRSQADAL-MRRLAQQKP  526 (1157)
T ss_pred             HHHHHHHHHHcCCHHHHHHH-HHHHHHcCC
Confidence            88888877666666555444 566665444

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.10  E-value=1.9e-09  Score=86.04  Aligned_cols=117  Identities=16%  Similarity=0.158  Sum_probs=103.5

Q ss_pred             hhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024531          133 KNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLA  212 (266)
Q Consensus       133 ~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  212 (266)
                      ...+...+|..|+..|++..|...+++||+.||++..+|.-++.+|..+|+.+.|.+.|++|++++|+|.+++++.+--.
T Consensus        34 aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FL  113 (250)
T COG3063          34 AAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFL  113 (250)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHH
Confidence            45578899999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             HHHHHHHHHHHHHHhcccCCCCCCcccchhHHHhHHHH
Q 024531          213 EHEKAVYKKQKEIYKGIFGPRPEPKQKKNWLIIFWQLL  250 (266)
Q Consensus       213 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~  250 (266)
                      -.+++.+++... |.+.+..+....+...|-.+.|=.+
T Consensus       114 C~qg~~~eA~q~-F~~Al~~P~Y~~~s~t~eN~G~Cal  150 (250)
T COG3063         114 CAQGRPEEAMQQ-FERALADPAYGEPSDTLENLGLCAL  150 (250)
T ss_pred             HhCCChHHHHHH-HHHHHhCCCCCCcchhhhhhHHHHh
Confidence            777766655554 8888888888888877766666444

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=99.09  E-value=3.7e-09  Score=77.09  Aligned_cols=106  Identities=25%  Similarity=0.277  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHH
Q 024531           77 EERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQ  156 (266)
Q Consensus        77 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~  156 (266)
                      ...++....+.-.|..+...|+.+.|++.|.++|.+.|....                 +|+|+|+++.-.|+.++|+++
T Consensus        37 ~~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raS-----------------ayNNRAQa~RLq~~~e~ALdD   99 (175)
T KOG4555|consen   37 TQAIKASRELELKAIALAEAGDLDGALELFGQALCLAPERAS-----------------AYNNRAQALRLQGDDEEALDD   99 (175)
T ss_pred             hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchH-----------------hhccHHHHHHHcCChHHHHHH
Confidence            445667778888999999999999999999999999999655                 799999999999999999999


Q ss_pred             HHhHhcCCCCch----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 024531          157 CSLVLGEDENNV----KALFRRGKARAELGQTDAAREDFLKAGKFAP  199 (266)
Q Consensus       157 ~~~al~l~p~~~----~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p  199 (266)
                      +++|+++.....    .++..+|.+|..+|+-+.|..+|..+-++..
T Consensus       100 Ln~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS  146 (175)
T KOG4555|consen  100 LNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGS  146 (175)
T ss_pred             HHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence            999999976654    4788999999999999999999999988765

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.08  E-value=3.8e-09  Score=93.50  Aligned_cols=128  Identities=16%  Similarity=0.108  Sum_probs=85.9

Q ss_pred             HHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCc
Q 024531           88 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN  167 (266)
Q Consensus        88 ~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~  167 (266)
                      ..|..++..|++++|+..|.++++..|...                 .++..+|.++.+.|++++|+..+++++..+|.+
T Consensus       185 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  247 (389)
T PRK11788        185 ELAQQALARGDLDAARALLKKALAADPQCV-----------------RASILLGDLALAQGDYAAAIEALERVEEQDPEY  247 (389)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhHCcCCH-----------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence            444455555555555555555555544422                 257778888888888888888888888887766


Q ss_pred             -hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 024531          168 -VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRP  234 (266)
Q Consensus       168 -~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~  234 (266)
                       ..++..++.+|...|++++|+..+++++..+|++..+ ..+..+....++..++ ...+.+++...|
T Consensus       248 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~~A-~~~l~~~l~~~P  313 (389)
T PRK11788        248 LSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLL-LALAQLLEEQEGPEAA-QALLREQLRRHP  313 (389)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH-HHHHHHHHHhCCHHHH-HHHHHHHHHhCc
Confidence             3566778888888888888888888888888876554 5566665555555443 344666665543

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.08  E-value=2.7e-09  Score=102.61  Aligned_cols=114  Identities=11%  Similarity=0.095  Sum_probs=105.4

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  162 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~  162 (266)
                      +..+...|..+...|++.+|+..|++++...|.+..                 ++.++|.++...|++++|+..+++++.
T Consensus        49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~-----------------a~~~la~~l~~~g~~~eA~~~l~~~l~  111 (765)
T PRK10049         49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDD-----------------YQRGLILTLADAGQYDEALVKAKQLVS  111 (765)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            445788899999999999999999999999998765                 578999999999999999999999999


Q ss_pred             CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024531          163 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEH  214 (266)
Q Consensus       163 l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  214 (266)
                      .+|++.. ++.+|.++...|++++|+..|+++++++|+++.+...+..+...
T Consensus       112 ~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~  162 (765)
T PRK10049        112 GAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRN  162 (765)
T ss_pred             hCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            9999999 99999999999999999999999999999999998888776543

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.08  E-value=1.3e-09  Score=82.88  Aligned_cols=96  Identities=15%  Similarity=0.050  Sum_probs=87.3

Q ss_pred             hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 024531          136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE  215 (266)
Q Consensus       136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  215 (266)
                      ..+.+|..+...|++++|...|+.+..+||.+...|+++|.|+..+|+|.+|+..|.+++.++|+|+....+++.|.-..
T Consensus        37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~l  116 (157)
T PRK15363         37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLAC  116 (157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence            47789999999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHHHhcccCC
Q 024531          216 KAVYKKQKEIYKGIFGP  232 (266)
Q Consensus       216 ~~~~~~~~~~~~k~~~~  232 (266)
                      ++...+.+. |+.....
T Consensus       117 G~~~~A~~a-F~~Ai~~  132 (157)
T PRK15363        117 DNVCYAIKA-LKAVVRI  132 (157)
T ss_pred             CCHHHHHHH-HHHHHHH
Confidence            887766665 5665543

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.07  E-value=1.1e-08  Score=84.76  Aligned_cols=131  Identities=15%  Similarity=0.125  Sum_probs=104.9

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  162 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~  162 (266)
                      ...++..|..++..|+|++|+..|.+++...|....              ...+.+++|.+|++.+++..|+..+++.++
T Consensus        32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~--------------a~~a~l~la~ayy~~~~y~~A~~~~e~fi~   97 (243)
T PRK10866         32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPY--------------SQQVQLDLIYAYYKNADLPLAQAAIDRFIR   97 (243)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH--------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            556789999999999999999999999999998643              333678999999999999999999999999


Q ss_pred             CCCCch---HHHHHHHHHHHHcCC------------------HHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHHHHH
Q 024531          163 EDENNV---KALFRRGKARAELGQ------------------TDAAREDFLKAGKFAPED---KSIARELRLLAEHEKAV  218 (266)
Q Consensus       163 l~p~~~---~a~~~~g~~~~~~g~------------------~~~A~~~~~~al~l~p~~---~~~~~~l~~l~~~~~~~  218 (266)
                      .+|+++   .++|.+|.++..++.                  ..+|+..|+..++..|+.   +++...|..|..++.+.
T Consensus        98 ~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~  177 (243)
T PRK10866         98 LNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKY  177 (243)
T ss_pred             hCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHH
Confidence            999875   579999999866651                  257889999999999986   45666666665555554


Q ss_pred             HHHHHHHHh
Q 024531          219 YKKQKEIYK  227 (266)
Q Consensus       219 ~~~~~~~~~  227 (266)
                      +-.-.+.|.
T Consensus       178 e~~ia~~Y~  186 (243)
T PRK10866        178 ELSVAEYYT  186 (243)
T ss_pred             HHHHHHHHH
Confidence            444334333

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=99.07  E-value=3.5e-09  Score=79.13  Aligned_cols=110  Identities=20%  Similarity=0.193  Sum_probs=97.9

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  162 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~  162 (266)
                      ...++..|...++.|+|..|++.|+......|...-              ...+.+.++.+|++.++|..|+..+++-++
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~y--------------a~qAqL~l~yayy~~~~y~~A~a~~~rFir   75 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEY--------------AEQAQLDLAYAYYKQGDYEEAIAAYDRFIR   75 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcc--------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            567889999999999999999999999999987543              233788999999999999999999999999


Q ss_pred             CCCCch---HHHHHHHHHHHHcCC---------------HHHHHHHHHHHHhhCCCCHHHHH
Q 024531          163 EDENNV---KALFRRGKARAELGQ---------------TDAAREDFLKAGKFAPEDKSIAR  206 (266)
Q Consensus       163 l~p~~~---~a~~~~g~~~~~~g~---------------~~~A~~~~~~al~l~p~~~~~~~  206 (266)
                      ++|.++   -++|.+|.+++.+..               ...|..+|++++..-|+++-+..
T Consensus        76 LhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~d  137 (142)
T PF13512_consen   76 LHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAAD  137 (142)
T ss_pred             hCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence            999986   479999999999988               89999999999999999875543

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.05  E-value=1.1e-08  Score=82.70  Aligned_cols=131  Identities=21%  Similarity=0.160  Sum_probs=100.3

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531           82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  161 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al  161 (266)
                      ..+.++..|..++..|+|.+|+..|.+.+...|....              ...+.+.+|.++.+.|++..|+..+++.+
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~--------------a~~A~l~la~a~y~~~~y~~A~~~~~~fi   69 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPY--------------APQAQLMLAYAYYKQGDYEEAIAAYERFI   69 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTT--------------HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH--------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4678899999999999999999999999999998654              33478899999999999999999999999


Q ss_pred             cCCCCch---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHHHHHHHHHHH
Q 024531          162 GEDENNV---KALFRRGKARAELGQ-----------TDAAREDFLKAGKFAPEDK---SIARELRLLAEHEKAVYKKQKE  224 (266)
Q Consensus       162 ~l~p~~~---~a~~~~g~~~~~~g~-----------~~~A~~~~~~al~l~p~~~---~~~~~l~~l~~~~~~~~~~~~~  224 (266)
                      ...|+++   .++|.+|.+++.+..           ..+|+..|+..+...|+++   ++...+..|...+.+.+-.-.+
T Consensus        70 ~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~  149 (203)
T PF13525_consen   70 KLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIAR  149 (203)
T ss_dssp             HH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999875   589999999877643           3589999999999999974   5555566665555544433333


Q ss_pred             HH
Q 024531          225 IY  226 (266)
Q Consensus       225 ~~  226 (266)
                      .|
T Consensus       150 ~Y  151 (203)
T PF13525_consen  150 FY  151 (203)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.05  E-value=7.6e-09  Score=91.59  Aligned_cols=126  Identities=10%  Similarity=0.029  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhh--------hchhHHHH---HH----------Hhhh
Q 024531           76 VEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQ--------LFGKYRDM---AL----------AVKN  134 (266)
Q Consensus        76 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~--------~~~~~~~~---~~----------~l~~  134 (266)
                      .+.....+...+..|..+...|++++|+..|.++++.+|++....        ..+...+-   ..          ....
T Consensus        28 ~~~~~~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~  107 (389)
T PRK11788         28 QQKESNRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRL  107 (389)
T ss_pred             hhhhhhhccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHH
Confidence            344455566667778888888888888888888888877654310        00000000   00          0011


Q ss_pred             hhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 024531          135 PCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED  201 (266)
Q Consensus       135 ~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~  201 (266)
                      .++.++|.+|...|++++|+..+.+++..+|.+..++..++.++...|++++|++.+++++..+|.+
T Consensus       108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~  174 (389)
T PRK11788        108 LALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDS  174 (389)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCc
Confidence            2345556666666666666666666666555555566666666666666666666666665555543

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.05  E-value=5.3e-10  Score=73.76  Aligned_cols=68  Identities=26%  Similarity=0.276  Sum_probs=62.1

Q ss_pred             HHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024531          144 LLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL  211 (266)
Q Consensus       144 ~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l  211 (266)
                      +++.|+|++|+..|++++..+|++..+++.+|.||...|++++|...+++++..+|+++.+...++.+
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i   68 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI   68 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence            35789999999999999999999999999999999999999999999999999999998888776643

...

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.05  E-value=4.6e-09  Score=90.15  Aligned_cols=157  Identities=15%  Similarity=0.068  Sum_probs=124.4

Q ss_pred             HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhH
Q 024531           81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  160 (266)
Q Consensus        81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~a  160 (266)
                      ..+..++-+|..++-..+.+.|+.+|+++|.++|+.......-.   +.+  ......+.|.-.++.|.+..|.+.|..+
T Consensus       201 ~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~---~~k--~le~~k~~gN~~fk~G~y~~A~E~Ytea  275 (486)
T KOG0550|consen  201 TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASM---MPK--KLEVKKERGNDAFKNGNYRKAYECYTEA  275 (486)
T ss_pred             chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhh---hHH--HHHHHHhhhhhHhhccchhHHHHHHHHh
Confidence            45677888999999999999999999999999998543211000   001  1224567899999999999999999999


Q ss_pred             hcCCCCc----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 024531          161 LGEDENN----VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEP  236 (266)
Q Consensus       161 l~l~p~~----~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~~  236 (266)
                      |.+||++    .+.|+++|.+...+|+..+|+.++..++.|+|..-.+...-+.|+..+.+.+.+.+ +|.+.......+
T Consensus       276 l~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~-d~~~a~q~~~s~  354 (486)
T KOG0550|consen  276 LNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVE-DYEKAMQLEKDC  354 (486)
T ss_pred             hcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhcccc
Confidence            9999986    56799999999999999999999999999999988888888888888887765554 477777665554


Q ss_pred             cccchhH
Q 024531          237 KQKKNWL  243 (266)
Q Consensus       237 ~~~~~~~  243 (266)
                      .....|+
T Consensus       355 e~r~~l~  361 (486)
T KOG0550|consen  355 EIRRTLR  361 (486)
T ss_pred             chHHHHH
Confidence            4444443

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.04  E-value=3.6e-09  Score=94.13  Aligned_cols=183  Identities=13%  Similarity=0.137  Sum_probs=140.8

Q ss_pred             CHHHHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhh--------h-------------------------
Q 024531           75 TVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQ--------L-------------------------  121 (266)
Q Consensus        75 ~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~--------~-------------------------  121 (266)
                      +..+.+..++.+..+|.....+++=..|+..+++|++++|.+...-        .                         
T Consensus       311 AVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~  390 (579)
T KOG1125|consen  311 AVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLV  390 (579)
T ss_pred             HHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhcc
Confidence            4455678899999999999999999999999999999998753220        0                         


Q ss_pred             -------ch------------hHHHHH--------HHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHH
Q 024531          122 -------FG------------KYRDMA--------LAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRR  174 (266)
Q Consensus       122 -------~~------------~~~~~~--------~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~  174 (266)
                             ++            +..+..        ..+...++..+|..|.-.|+|++|+++|+.||..+|++...|.++
T Consensus       391 ~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRL  470 (579)
T KOG1125|consen  391 SAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRL  470 (579)
T ss_pred             ccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHh
Confidence                   00            000000        012345778899999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC---Cccc-chhHHHhHHHH
Q 024531          175 GKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPE---PKQK-KNWLIIFWQLL  250 (266)
Q Consensus       175 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~---~~~~-~~~~~~~~~~~  250 (266)
                      |-++..-.+..+|+..|++|++|.|+-..++.+|+.....++-++++.+.+...+ ..-+.   .... .+ -.-.|+.|
T Consensus       471 GAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL-~mq~ks~~~~~~~~~-se~iw~tL  548 (579)
T KOG1125|consen  471 GATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL-SMQRKSRNHNKAPMA-SENIWQTL  548 (579)
T ss_pred             hHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH-HhhhcccccccCCcc-hHHHHHHH
Confidence            9999999999999999999999999999999999999888999988888765444 33222   1111 11 23468888


Q ss_pred             HHHHHHHhhh
Q 024531          251 VSLVLGLFKR  260 (266)
Q Consensus       251 ~~~~~~~~~~  260 (266)
                      . .++.++.|
T Consensus       549 R-~als~~~~  557 (579)
T KOG1125|consen  549 R-LALSAMNR  557 (579)
T ss_pred             H-HHHHHcCC
Confidence            8 55555544

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.04  E-value=1.4e-09  Score=94.31  Aligned_cols=143  Identities=20%  Similarity=0.200  Sum_probs=117.3

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  162 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~  162 (266)
                      +..+.+.|+..|.+|++++|.+.|.++|.-+.....                 +++|+|..+-.+|+.++|+++|-+.-.
T Consensus       490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~e-----------------alfniglt~e~~~~ldeald~f~klh~  552 (840)
T KOG2003|consen  490 AAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTE-----------------ALFNIGLTAEALGNLDEALDCFLKLHA  552 (840)
T ss_pred             HHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHH-----------------HHHHhcccHHHhcCHHHHHHHHHHHHH
Confidence            344557799999999999999999999987766433                 699999999999999999999988777


Q ss_pred             CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcccchh
Q 024531          163 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKKNW  242 (266)
Q Consensus       163 l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~  242 (266)
                      +--++...++.++.+|.-+.+..+|++.|.++..+-|+++.++..|+.++...+..-++-+..| .-+.-.|-+-....|
T Consensus       553 il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~y-dsyryfp~nie~iew  631 (840)
T KOG2003|consen  553 ILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHY-DSYRYFPCNIETIEW  631 (840)
T ss_pred             HHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhh-hcccccCcchHHHHH
Confidence            7668999999999999999999999999999999999999999999999877776665555533 333322443334455


Q ss_pred             H
Q 024531          243 L  243 (266)
Q Consensus       243 ~  243 (266)
                      +
T Consensus       632 l  632 (840)
T KOG2003|consen  632 L  632 (840)
T ss_pred             H
Confidence            3

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.04  E-value=3.1e-10  Score=95.17  Aligned_cols=109  Identities=23%  Similarity=0.318  Sum_probs=102.9

Q ss_pred             CHHHHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHH
Q 024531           75 TVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAI  154 (266)
Q Consensus        75 ~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~  154 (266)
                      ..++..+++...+..+...+..|.++.|+..|..+|.+.|....                 +|.+++.++++++.+..|+
T Consensus       106 ~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~-----------------l~~kr~sv~lkl~kp~~ai  168 (377)
T KOG1308|consen  106 ITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAI-----------------LYAKRASVFLKLKKPNAAI  168 (377)
T ss_pred             hhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCchhh-----------------hcccccceeeeccCCchhh
Confidence            56778899999999999999999999999999999999998655                 6999999999999999999


Q ss_pred             HHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 024531          155 GQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE  200 (266)
Q Consensus       155 ~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~  200 (266)
                      .+|..|+.++|+..+.|-.+|.++..+|+|.+|..++..+++++-+
T Consensus       169 rD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d  214 (377)
T KOG1308|consen  169 RDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD  214 (377)
T ss_pred             hhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence            9999999999999999999999999999999999999999998754

>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=4e-10  Score=86.22  Aligned_cols=62  Identities=27%  Similarity=0.499  Sum_probs=58.0

Q ss_pred             ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeeccccc
Q 024531            2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETK   66 (266)
Q Consensus         2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~~~~~   66 (266)
                      +||.+ +||+|+|.+|.-|+.||+..++|.|.++||+.|.  ++.||+++.+.|+++|+.+.+..
T Consensus       118 ~LG~g-qVIkG~Dqgl~gMCvGEkRkl~IPp~LgYG~~G~--~~~IP~~A~LiFdiELv~i~~~~  179 (188)
T KOG0549|consen  118 TLGTG-QVIKGWDQGLLGMCVGEKRKLIIPPHLGYGERGA--PPKIPGDAVLIFDIELVKIERGP  179 (188)
T ss_pred             EeCCC-ceeccHhHHhhhhCcccceEEecCccccCccCCC--CCCCCCCeeEEEEEEEEEeecCC
Confidence            58999 8999999999999999999999999999999998  66699999999999999987754

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.02  E-value=4e-09  Score=92.43  Aligned_cols=113  Identities=13%  Similarity=0.022  Sum_probs=96.6

Q ss_pred             hhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 024531          137 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEK  216 (266)
Q Consensus       137 ~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~  216 (266)
                      +...|...+..|+|.+|+..|+++|.++|++..+++.+|.+|..+|++++|+.++++++.++|++..++..++.+...++
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            55678999999999999999999999999999999999999999999999999999999999999999999999888887


Q ss_pred             HHHHHHHHHHhcccCCCCCCcccchhHHHhHHHH
Q 024531          217 AVYKKQKEIYKGIFGPRPEPKQKKNWLIIFWQLL  250 (266)
Q Consensus       217 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~  250 (266)
                      +..++... |++.+...+.......|...+-.-+
T Consensus        85 ~~~eA~~~-~~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         85 EYQTAKAA-LEKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             CHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            77666555 7888877776655555544443333

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.01  E-value=5.1e-09  Score=87.00  Aligned_cols=115  Identities=21%  Similarity=0.177  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhh---CHHHHHHH
Q 024531           80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK---RYEEAIGQ  156 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~---~~~~A~~~  156 (266)
                      +..++.+.-+|..++..|++..|...|.+|+++.|+++.                 .+..+|.+++...   .-.++...
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~-----------------~~~g~aeaL~~~a~~~~ta~a~~l  215 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPE-----------------ILLGLAEALYYQAGQQMTAKARAL  215 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHhcCCcccHHHHHH
Confidence            455666778899999999999999999999999999776                 4677777776655   47889999


Q ss_pred             HHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024531          157 CSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL  211 (266)
Q Consensus       157 ~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l  211 (266)
                      +++++.+||.++.+.+.+|..+++.|+|.+|...++..+...|.+...+..+...
T Consensus       216 l~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~  270 (287)
T COG4235         216 LRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERS  270 (287)
T ss_pred             HHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence            9999999999999999999999999999999999999999999887776666544

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.00  E-value=1.3e-08  Score=95.32  Aligned_cols=152  Identities=18%  Similarity=0.194  Sum_probs=113.3

Q ss_pred             HHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCC
Q 024531           87 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDEN  166 (266)
Q Consensus        87 ~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~  166 (266)
                      ..+++.+|-.|+|..+...+..++.....              ..+....++++|.+|-.+|+|++|..+|-+++..+|+
T Consensus       274 ~~LAn~fyfK~dy~~v~~la~~ai~~t~~--------------~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d  339 (1018)
T KOG2002|consen  274 NHLANHFYFKKDYERVWHLAEHAIKNTEN--------------KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADND  339 (1018)
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHHHhhhh--------------hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCC
Confidence            33444444455555555544444443322              2345667999999999999999999999999999999


Q ss_pred             c-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHhcccCCCCCCcccchh
Q 024531          167 N-VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEK---AVYKKQKEIYKGIFGPRPEPKQKKNW  242 (266)
Q Consensus       167 ~-~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~---~~~~~~~~~~~k~~~~~~~~~~~~~~  242 (266)
                      + .-+++.+|+.|+..|+++.|..+|++++...|++.+....|+.++....   +..+....+..+.+.  ..+....+|
T Consensus       340 ~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~--~~~~d~~a~  417 (1018)
T KOG2002|consen  340 NFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLE--QTPVDSEAW  417 (1018)
T ss_pred             CccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHh--cccccHHHH
Confidence            8 7899999999999999999999999999999999999999999876652   233444445555543  335555888


Q ss_pred             HHHhHHHHHHHH
Q 024531          243 LIIFWQLLVSLV  254 (266)
Q Consensus       243 ~~~~~~~~~~~~  254 (266)
                      ..++..|..+-.
T Consensus       418 l~laql~e~~d~  429 (1018)
T KOG2002|consen  418 LELAQLLEQTDP  429 (1018)
T ss_pred             HHHHHHHHhcCh
Confidence            888777765543

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.00  E-value=8.2e-09  Score=84.79  Aligned_cols=113  Identities=19%  Similarity=0.155  Sum_probs=101.4

Q ss_pred             HHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcC
Q 024531           84 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE  163 (266)
Q Consensus        84 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l  163 (266)
                      ...++.+..+++.|+|..|...|..-|...|++.-              ...+++.+|.+++.+|+|.+|...|..+++-
T Consensus       142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~--------------~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~  207 (262)
T COG1729         142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTY--------------TPNAYYWLGESLYAQGDYEDAAYIFARVVKD  207 (262)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcc--------------cchhHHHHHHHHHhcccchHHHHHHHHHHHh
Confidence            33899999999999999999999999999998543              4458999999999999999999999999999


Q ss_pred             CCCch---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024531          164 DENNV---KALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRL  210 (266)
Q Consensus       164 ~p~~~---~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~  210 (266)
                      .|.++   ++++.+|.|...+|+.++|...|+.+++.-|+.+.+...-..
T Consensus       208 ~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~  257 (262)
T COG1729         208 YPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVA  257 (262)
T ss_pred             CCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence            88765   679999999999999999999999999999999887654443

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.99  E-value=1.1e-08  Score=70.20  Aligned_cols=95  Identities=25%  Similarity=0.298  Sum_probs=83.0

Q ss_pred             hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 024531          136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE  215 (266)
Q Consensus       136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  215 (266)
                      +++++|.++...|++.+|+..+.+++...|.+..+++.+|.++...+++++|+..|++++.+.|.+..+...+..+....
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999998888888887777


Q ss_pred             HHHHHHHHHHHhcccC
Q 024531          216 KAVYKKQKEIYKGIFG  231 (266)
Q Consensus       216 ~~~~~~~~~~~~k~~~  231 (266)
                      ++..... ..+...+.
T Consensus        82 ~~~~~a~-~~~~~~~~   96 (100)
T cd00189          82 GKYEEAL-EAYEKALE   96 (100)
T ss_pred             HhHHHHH-HHHHHHHc
Confidence            6655444 34555544

>PLN02789 farnesyltranstransferase

Probab=98.99  E-value=2.5e-08  Score=85.84  Aligned_cols=134  Identities=13%  Similarity=0.087  Sum_probs=114.0

Q ss_pred             HHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhh-CHHHHHHHHHhHhcCCCCchHH
Q 024531           92 ALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK-RYEEAIGQCSLVLGEDENNVKA  170 (266)
Q Consensus        92 ~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~-~~~~A~~~~~~al~l~p~~~~a  170 (266)
                      .+...+++.+|+..+.++|.++|....                 ++.+++.++..++ .+.+++..+++++..+|.+..+
T Consensus        46 ~l~~~e~serAL~lt~~aI~lnP~~yt-----------------aW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqa  108 (320)
T PLN02789         46 VYASDERSPRALDLTADVIRLNPGNYT-----------------VWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQI  108 (320)
T ss_pred             HHHcCCCCHHHHHHHHHHHHHCchhHH-----------------HHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHH
Confidence            456678999999999999999999655                 6999999999999 6899999999999999999999


Q ss_pred             HHHHHHHHHHcCCH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcccchhHHH
Q 024531          171 LFRRGKARAELGQT--DAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKKNWLII  245 (266)
Q Consensus       171 ~~~~g~~~~~~g~~--~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~  245 (266)
                      |+.++.++..+|..  ++++..+.++++++|.|-.+....+-+...++..+++ -..+.+++...+.+  .++|...
T Consensus       109 W~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~ee-L~~~~~~I~~d~~N--~sAW~~R  182 (320)
T PLN02789        109 WHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDE-LEYCHQLLEEDVRN--NSAWNQR  182 (320)
T ss_pred             hHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHCCCc--hhHHHHH
Confidence            99999999999974  7899999999999999999999999998888776654 45577877654443  3566433

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.99  E-value=1.3e-09  Score=71.20  Aligned_cols=64  Identities=23%  Similarity=0.308  Sum_probs=58.5

Q ss_pred             HHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCc
Q 024531           88 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN  167 (266)
Q Consensus        88 ~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~  167 (266)
                      .+|..++..|+|++|+..|++++...|.+..                 +++.+|.++..+|++++|+..++++++.+|++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~-----------------a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPE-----------------AWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHH-----------------HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            6799999999999999999999999999665                 69999999999999999999999999999987


Q ss_pred             h
Q 024531          168 V  168 (266)
Q Consensus       168 ~  168 (266)
                      +
T Consensus        65 p   65 (65)
T PF13432_consen   65 P   65 (65)
T ss_dssp             H
T ss_pred             C
Confidence            5

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.98  E-value=4.4e-09  Score=98.35  Aligned_cols=143  Identities=11%  Similarity=0.115  Sum_probs=115.0

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531           80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  159 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~  159 (266)
                      +..+..+.-+|.+.|+.++|..|+.+|++++..+|.....                ....+|.|+.++++.+.|+..+.+
T Consensus       161 p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD----------------~rIgig~Cf~kl~~~~~a~~a~~r  224 (1018)
T KOG2002|consen  161 PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKAD----------------VRIGIGHCFWKLGMSEKALLAFER  224 (1018)
T ss_pred             CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCC----------------ccchhhhHHHhccchhhHHHHHHH
Confidence            4556677788999999999999999999999999985432                466788999999999999999999


Q ss_pred             HhcCCCCc------------------------------------------------------------------------
Q 024531          160 VLGEDENN------------------------------------------------------------------------  167 (266)
Q Consensus       160 al~l~p~~------------------------------------------------------------------------  167 (266)
                      |+.+||.+                                                                        
T Consensus       225 alqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~  304 (1018)
T KOG2002|consen  225 ALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKS  304 (1018)
T ss_pred             HHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhH
Confidence            99998832                                                                        


Q ss_pred             --hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCccc
Q 024531          168 --VKALFRRGKARAELGQTDAAREDFLKAGKFAPED-KSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQK  239 (266)
Q Consensus       168 --~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~-~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~  239 (266)
                        ...+|.+|.+|+.+|+|++|..+|..++..+|++ .-....|+..+......+.+..- |.+++...|.+...
T Consensus       305 ~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~-fEkv~k~~p~~~et  378 (1018)
T KOG2002|consen  305 IKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFC-FEKVLKQLPNNYET  378 (1018)
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHH-HHHHHHhCcchHHH
Confidence              3469999999999999999999999999999998 55556677666566666555444 67777666665544

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.97  E-value=1.4e-08  Score=82.50  Aligned_cols=127  Identities=16%  Similarity=0.139  Sum_probs=107.7

Q ss_pred             HHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCC
Q 024531           87 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDEN  166 (266)
Q Consensus        87 ~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~  166 (266)
                      ...++.++..|+-+.++....++....|.+..                 ++.-.|...+..|+|..|+..++++..++|+
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~-----------------ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~  132 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRE-----------------LLAAQGKNQIRNGNFGEAVSVLRKAARLAPT  132 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccCcccHH-----------------HHHHHHHHHHHhcchHHHHHHHHHHhccCCC
Confidence            45666777777777777777777666666543                 3555899999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 024531          167 NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIF  230 (266)
Q Consensus       167 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~  230 (266)
                      +.++|.-+|.+|.+.|++++|...|.+++++.|+++.+..+|....-..++.+.+++.+.....
T Consensus       133 d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l  196 (257)
T COG5010         133 DWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYL  196 (257)
T ss_pred             ChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999998777777777776554444

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.96  E-value=5.2e-09  Score=95.81  Aligned_cols=105  Identities=26%  Similarity=0.190  Sum_probs=86.5

Q ss_pred             HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHH--HHH
Q 024531           81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIG--QCS  158 (266)
Q Consensus        81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~--~~~  158 (266)
                      ..+..++..|..+..+|++.+|...|..|+.++|+...                 +...+|.++.+.|+..-|..  ...
T Consensus       682 l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~-----------------s~~Ala~~lle~G~~~la~~~~~L~  744 (799)
T KOG4162|consen  682 LSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVP-----------------SMTALAELLLELGSPRLAEKRSLLS  744 (799)
T ss_pred             hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcH-----------------HHHHHHHHHHHhCCcchHHHHHHHH
Confidence            34556677788888888888888888888888888554                 57788888888888777777  888


Q ss_pred             hHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 024531          159 LVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK  202 (266)
Q Consensus       159 ~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~  202 (266)
                      .++++||.++++||.+|.++..+|+.++|.++|+-|+++++.+|
T Consensus       745 dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P  788 (799)
T KOG4162|consen  745 DALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP  788 (799)
T ss_pred             HHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence            88888888888888888888888888888888888888888775

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.96  E-value=1.9e-08  Score=94.75  Aligned_cols=110  Identities=8%  Similarity=-0.048  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHH
Q 024531           76 VEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIG  155 (266)
Q Consensus        76 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~  155 (266)
                      .+..+..+......+..+.+.+++++|+..+.+++...|++..                 .++++|.++.++|++++|+.
T Consensus       113 ~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~-----------------~~~~~a~~l~~~g~~~~A~~  175 (694)
T PRK15179        113 HQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAR-----------------EILLEAKSWDEIGQSEQADA  175 (694)
T ss_pred             HhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHH-----------------HHHHHHHHHHHhcchHHHHH
Confidence            3344666777888999999999999999999999999999776                 59999999999999999999


Q ss_pred             HHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 024531          156 QCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK  202 (266)
Q Consensus       156 ~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~  202 (266)
                      .|++++..+|++.+++..+|.++..+|+.++|...|++++.....-.
T Consensus       176 ~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~  222 (694)
T PRK15179        176 CFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGA  222 (694)
T ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcch
Confidence            99999999999999999999999999999999999999999876543

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.94  E-value=3.2e-09  Score=84.04  Aligned_cols=134  Identities=22%  Similarity=0.120  Sum_probs=113.8

Q ss_pred             CCCCCCceEEEEEEeeccccccCCCCCCCCHHHHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhH
Q 024531           46 NVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKY  125 (266)
Q Consensus        46 ~ip~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~  125 (266)
                      .+|.+..+..++.+..++....   .-.++.++   .+..+.++|+.+-..|-+..|.-.|.+++.+.|..+.       
T Consensus        34 ~~~~qp~lqqEV~iarlsqlL~---~~~l~~ee---RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~-------  100 (297)
T COG4785          34 AVPLQPTLQQEVILARMSQILA---SRALTDEE---RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPE-------  100 (297)
T ss_pred             eccCCccHHHHHHHHHHHHHHH---hccCChHH---HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHH-------
Confidence            3455555555555554444332   34445444   4888999999999999999999999999999999665       


Q ss_pred             HHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 024531          126 RDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK  202 (266)
Q Consensus       126 ~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~  202 (266)
                                +++.+|..+...|+|+.|.+.|+.++++||.+.-++.++|.+++.-|+|.-|.+++.+--+-||++|
T Consensus       101 ----------vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DP  167 (297)
T COG4785         101 ----------VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDP  167 (297)
T ss_pred             ----------HHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCCh
Confidence                      6999999999999999999999999999999999999999999999999999999999999999987

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.93  E-value=1.8e-08  Score=96.95  Aligned_cols=106  Identities=9%  Similarity=-0.036  Sum_probs=99.3

Q ss_pred             HHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcC
Q 024531           84 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE  163 (266)
Q Consensus        84 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l  163 (266)
                      ..+...|..+...|++++|+..+++++...|.+..                 ++.++|.++...|++++|+..+++++.+
T Consensus       360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~-----------------l~~~lA~l~~~~g~~~~A~~~l~~al~l  422 (765)
T PRK10049        360 QGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQG-----------------LRIDYASVLQARGWPRAAENELKKAEVL  422 (765)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence            44567888999999999999999999999999755                 6999999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 024531          164 DENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIAR  206 (266)
Q Consensus       164 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~  206 (266)
                      +|++..+++.+|.++..+|+|++|...++++++.+|+++.+..
T Consensus       423 ~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~  465 (765)
T PRK10049        423 EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQR  465 (765)
T ss_pred             CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            9999999999999999999999999999999999999997764

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.92  E-value=1.3e-08  Score=79.60  Aligned_cols=112  Identities=11%  Similarity=0.060  Sum_probs=90.2

Q ss_pred             hHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCc--
Q 024531           90 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN--  167 (266)
Q Consensus        90 g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~--  167 (266)
                      .+.+|-...|..+...+...+...+.+.               ...+++++|.++...|++++|+..+++++.+.|+.  
T Consensus         6 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~---------------~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~   70 (168)
T CHL00033          6 RNDNFIDKTFTIVADILLRILPTTSGEK---------------EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYD   70 (168)
T ss_pred             ccccccccccccchhhhhHhccCCchhH---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchh
Confidence            4455666667777777766555443321               23368999999999999999999999999887763  


Q ss_pred             -hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 024531          168 -VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEK  216 (266)
Q Consensus       168 -~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~  216 (266)
                       +.+++++|.++..+|++++|+..|++++.++|.+......+..+...+.
T Consensus        71 ~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~  120 (168)
T CHL00033         71 RSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRG  120 (168)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence             4589999999999999999999999999999999998888888876333

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.92  E-value=2.8e-08  Score=95.19  Aligned_cols=155  Identities=11%  Similarity=0.037  Sum_probs=105.7

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhh--------hhchhHHHH---HHH------hhhhhhhhHHHHH
Q 024531           82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMF--------QLFGKYRDM---ALA------VKNPCHLNMAACL  144 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~--------~~~~~~~~~---~~~------l~~~~~~n~a~~~  144 (266)
                      .+...+..+...++.|+++.|+..|.++++.+|.....        ...+...+-   ...      .....+..+|.++
T Consensus        33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly  112 (822)
T PRK14574         33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAY  112 (822)
T ss_pred             chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence            45578899999999999999999999999999986311        011111111   111      1122333446688


Q ss_pred             HHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 024531          145 LKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKE  224 (266)
Q Consensus       145 ~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~  224 (266)
                      ...|+|++|+..|+++++.+|+++.+++.++.++...+++++|+..++++...+|.+... ..+..+.....+..+ +-.
T Consensus       113 ~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~-AL~  190 (822)
T PRK14574        113 RNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYD-ALQ  190 (822)
T ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHH-HHH
Confidence            888888888888888888888888888888888888888888888888888888876665 344444433333333 444


Q ss_pred             HHhcccCCCCCCcc
Q 024531          225 IYKGIFGPRPEPKQ  238 (266)
Q Consensus       225 ~~~k~~~~~~~~~~  238 (266)
                      .|++++...|....
T Consensus       191 ~~ekll~~~P~n~e  204 (822)
T PRK14574        191 ASSEAVRLAPTSEE  204 (822)
T ss_pred             HHHHHHHhCCCCHH
Confidence            57777776655443

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.91  E-value=4.5e-08  Score=85.85  Aligned_cols=128  Identities=16%  Similarity=0.024  Sum_probs=115.4

Q ss_pred             HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhH
Q 024531           81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  160 (266)
Q Consensus        81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~a  160 (266)
                      ......+..+...+..|+++.|...++..+...|++..                 .....+.+++..++..+|++.++++
T Consensus       304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~-----------------~~~~~~~i~~~~nk~~~A~e~~~ka  366 (484)
T COG4783         304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPY-----------------YLELAGDILLEANKAKEAIERLKKA  366 (484)
T ss_pred             cchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHcCChHHHHHHHHHH
Confidence            34556678889999999999999999999999998776                 3667899999999999999999999


Q ss_pred             hcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 024531          161 LGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEI  225 (266)
Q Consensus       161 l~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~  225 (266)
                      +.++|+......++|.++++.|++.+|+..++..+.-+|+|+..+..|+..+..++...++....
T Consensus       367 l~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~  431 (484)
T COG4783         367 LALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR  431 (484)
T ss_pred             HhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999988887766555543

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.90  E-value=2e-08  Score=95.71  Aligned_cols=142  Identities=15%  Similarity=0.004  Sum_probs=111.5

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531           80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  159 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~  159 (266)
                      +.....+..+...+...+++++|+.....+++..|+...                 +|+.+|..+...+++.++...  .
T Consensus        28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~-----------------~yy~~G~l~~q~~~~~~~~lv--~   88 (906)
T PRK14720         28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSIS-----------------ALYISGILSLSRRPLNDSNLL--N   88 (906)
T ss_pred             cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCccee-----------------hHHHHHHHHHhhcchhhhhhh--h
Confidence            345667778888888999999999999999999999665                 467777777776666555544  4


Q ss_pred             HhcCCC-------------------CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 024531          160 VLGEDE-------------------NNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYK  220 (266)
Q Consensus       160 al~l~p-------------------~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~  220 (266)
                      ++..-+                   .+-.|++.+|.||-++|++++|...|+++++++|+|+.+.+.++......  ..+
T Consensus        89 ~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~--dL~  166 (906)
T PRK14720         89 LIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE--DKE  166 (906)
T ss_pred             hhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh--hHH
Confidence            444444                   44489999999999999999999999999999999999999999987766  566


Q ss_pred             HHHHHHhcccCCCCCCcccchh
Q 024531          221 KQKEIYKGIFGPRPEPKQKKNW  242 (266)
Q Consensus       221 ~~~~~~~k~~~~~~~~~~~~~~  242 (266)
                      +...|+++++...-...+....
T Consensus       167 KA~~m~~KAV~~~i~~kq~~~~  188 (906)
T PRK14720        167 KAITYLKKAIYRFIKKKQYVGI  188 (906)
T ss_pred             HHHHHHHHHHHHHHhhhcchHH
Confidence            7777888887654444444344

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.89  E-value=4.1e-08  Score=74.96  Aligned_cols=127  Identities=13%  Similarity=0.008  Sum_probs=74.5

Q ss_pred             HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhH
Q 024531           81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  160 (266)
Q Consensus        81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~a  160 (266)
                      ..+...+......+..+++..+...+...+.-.|+..-              ...+.+.+|.+++..|++++|+..++.+
T Consensus         9 ~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~y--------------a~~A~l~lA~~~~~~g~~~~A~~~l~~~   74 (145)
T PF09976_consen    9 EQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPY--------------AALAALQLAKAAYEQGDYDEAKAALEKA   74 (145)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH--------------HHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            34555556666666666666666666666666665421              2224556666677777777777777776


Q ss_pred             hcCCCCc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 024531          161 LGEDENN---VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQ  222 (266)
Q Consensus       161 l~l~p~~---~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~  222 (266)
                      +...|+.   ..+.+++|.++..+|+|++|+..++.+ .-.+-.+.+...++.+....++..++.
T Consensus        75 ~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~  138 (145)
T PF09976_consen   75 LANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEAR  138 (145)
T ss_pred             HhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHH
Confidence            6655443   346666677777777777777666542 222334555555666655555544433

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.87  E-value=2.7e-08  Score=72.61  Aligned_cols=100  Identities=19%  Similarity=0.186  Sum_probs=83.6

Q ss_pred             hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHH
Q 024531          136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENN---VKALFRRGKARAELGQTDAAREDFLKAGKFAPED---KSIARELR  209 (266)
Q Consensus       136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~l~  209 (266)
                      .++.+|..+...|++++|+..|.+++..+|++   ..+++.+|.++...|++++|+..|++++..+|++   +.+...++
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            58899999999999999999999999999876   5799999999999999999999999999999986   56777778


Q ss_pred             HHHHHHHHHHHHHHHHHhcccCCCCCC
Q 024531          210 LLAEHEKAVYKKQKEIYKGIFGPRPEP  236 (266)
Q Consensus       210 ~l~~~~~~~~~~~~~~~~k~~~~~~~~  236 (266)
                      .+....++..+.. ..+..++...|..
T Consensus        84 ~~~~~~~~~~~A~-~~~~~~~~~~p~~  109 (119)
T TIGR02795        84 MSLQELGDKEKAK-ATLQQVIKRYPGS  109 (119)
T ss_pred             HHHHHhCChHHHH-HHHHHHHHHCcCC
Confidence            7776666655444 4467776655543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.86  E-value=1.2e-08  Score=67.23  Aligned_cols=67  Identities=27%  Similarity=0.321  Sum_probs=59.9

Q ss_pred             HHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHH
Q 024531           93 LFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALF  172 (266)
Q Consensus        93 ~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~  172 (266)
                      ++..|+|++|+..|++++...|++..                 ++..+|.||++.|++++|...+.+++..+|+++..+.
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~-----------------~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~   63 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPE-----------------ARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQ   63 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHH-----------------HHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence            46789999999999999999999766                 5889999999999999999999999999999988777


Q ss_pred             HHHH
Q 024531          173 RRGK  176 (266)
Q Consensus       173 ~~g~  176 (266)
                      -++.
T Consensus        64 l~a~   67 (68)
T PF14559_consen   64 LLAQ   67 (68)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            6664

...

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.84  E-value=1.2e-08  Score=89.61  Aligned_cols=63  Identities=17%  Similarity=0.140  Sum_probs=60.5

Q ss_pred             hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHH---HHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024531          136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKA---LFRRGKARAELGQTDAAREDFLKAGKFA  198 (266)
Q Consensus       136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a---~~~~g~~~~~~g~~~~A~~~~~~al~l~  198 (266)
                      +++|+|.+|+++|+|++|+..|+++|+++|++..+   ||++|.||..+|++++|+.+|++|+++.
T Consensus        77 a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         77 DAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            69999999999999999999999999999999865   9999999999999999999999999983

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.83  E-value=5.8e-08  Score=74.96  Aligned_cols=99  Identities=29%  Similarity=0.262  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHh----------hCHHHHHHHHHhHhcCCCCch
Q 024531           99 LEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKL----------KRYEEAIGQCSLVLGEDENNV  168 (266)
Q Consensus        99 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~----------~~~~~A~~~~~~al~l~p~~~  168 (266)
                      |+.|.+.|......+|.+.+                 .+++=|.+++.+          ..+.+|+.-++.||.++|+..
T Consensus         7 FE~ark~aea~y~~nP~Dad-----------------nL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~h   69 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDAD-----------------NLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKH   69 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HH-----------------HHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-H
T ss_pred             HHHHHHHHHHHHHhCcHhHH-----------------HHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchH
Confidence            67888999999999998765                 355555555544          347889999999999999999


Q ss_pred             HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024531          169 KALFRRGKARAELGQ-----------TDAAREDFLKAGKFAPEDKSIARELRLLAEH  214 (266)
Q Consensus       169 ~a~~~~g~~~~~~g~-----------~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  214 (266)
                      .+++.+|.+|..++.           |++|..+|++|...+|+|...++.|....+.
T Consensus        70 dAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~ka  126 (186)
T PF06552_consen   70 DALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAKA  126 (186)
T ss_dssp             HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhh
Confidence            999999999998776           7999999999999999999999988877543

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.81  E-value=1.1e-07  Score=69.90  Aligned_cols=99  Identities=24%  Similarity=0.118  Sum_probs=86.7

Q ss_pred             HHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcC
Q 024531           84 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE  163 (266)
Q Consensus        84 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l  163 (266)
                      ..+++.|..+-..|+.++|+..|.+++........              ...++.++|.++..+|++++|+..+++++..
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~--------------~~~a~i~lastlr~LG~~deA~~~L~~~~~~   67 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGAD--------------RRRALIQLASTLRNLGRYDEALALLEEALEE   67 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH--------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            35678899999999999999999999997554332              3447899999999999999999999999998


Q ss_pred             CCC---chHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024531          164 DEN---NVKALFRRGKARAELGQTDAAREDFLKAGK  196 (266)
Q Consensus       164 ~p~---~~~a~~~~g~~~~~~g~~~~A~~~~~~al~  196 (266)
                      .|+   +......++.++..+|++++|+..+-.++.
T Consensus        68 ~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   68 FPDDELNAALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             CCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            888   778888899999999999999999988775

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.78  E-value=9.7e-08  Score=84.99  Aligned_cols=138  Identities=17%  Similarity=0.169  Sum_probs=110.4

Q ss_pred             HhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcC----C
Q 024531           89 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE----D  164 (266)
Q Consensus        89 ~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l----~  164 (266)
                      .|..+...+.+..|...|.+|+.+.|+++.                 ++..+|.+.+..+.|.+|+.+++.++..    .
T Consensus       386 lgmey~~t~n~kLAe~Ff~~A~ai~P~Dpl-----------------v~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~  448 (611)
T KOG1173|consen  386 LGMEYMRTNNLKLAEKFFKQALAIAPSDPL-----------------VLHELGVVAYTYEEYPEALKYFQKALEVIKSVL  448 (611)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHhcCCCcch-----------------hhhhhhheeehHhhhHHHHHHHHHHHHHhhhcc
Confidence            467777777778888888888888887766                 5788999999999999999999999832    2


Q ss_pred             CC---chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcccch
Q 024531          165 EN---NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKKN  241 (266)
Q Consensus       165 p~---~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~  241 (266)
                      +.   ....+.++|.++.+++.|++|+.+|+++|.+.|.+..+...++.++..++....+ ...|-|.+...+.+.-...
T Consensus       449 ~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~A-id~fhKaL~l~p~n~~~~~  527 (611)
T KOG1173|consen  449 NEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKA-IDHFHKALALKPDNIFISE  527 (611)
T ss_pred             ccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHH-HHHHHHHHhcCCccHHHHH
Confidence            22   2345789999999999999999999999999999999999999998888877544 4557788877777644433


Q ss_pred             hHH
Q 024531          242 WLI  244 (266)
Q Consensus       242 ~~~  244 (266)
                      .++
T Consensus       528 lL~  530 (611)
T KOG1173|consen  528 LLK  530 (611)
T ss_pred             HHH
Confidence            333

>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5

Probab=98.77  E-value=1.9e-08  Score=70.87  Aligned_cols=57  Identities=35%  Similarity=0.579  Sum_probs=51.3

Q ss_pred             ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEe
Q 024531            2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI   60 (266)
Q Consensus         2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~   60 (266)
                      ++|++ .+++||+.+|..|+.||++.|.+++..+||..+... +.+|+++++.|.|+|+
T Consensus        38 ~~g~~-~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~-~~ip~~~~l~f~Iell   94 (94)
T PF00254_consen   38 RLGSG-QVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEP-PKIPPNSTLVFEIELL   94 (94)
T ss_dssp             ETTSS-SSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCT-TTBTTTSEEEEEEEEE
T ss_pred             eeccC-ccccchhhhcccccCCCEeeeEeCChhhcCccccCC-CCcCCCCeEEEEEEEC
Confidence            57888 799999999999999999999999999999988733 3499999999999985

2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.77  E-value=9.5e-08  Score=75.09  Aligned_cols=83  Identities=18%  Similarity=0.178  Sum_probs=73.9

Q ss_pred             hhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024531          134 NPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN---VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRL  210 (266)
Q Consensus       134 ~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~  210 (266)
                      ..+++++|.++...|++++|+.+|++++.+.|+.   ..+++.+|.++..+|++++|+..|++++.++|++......++.
T Consensus        35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~  114 (172)
T PRK02603         35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV  114 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            3468999999999999999999999999887653   4689999999999999999999999999999999988888887


Q ss_pred             HHHHHH
Q 024531          211 LAEHEK  216 (266)
Q Consensus       211 l~~~~~  216 (266)
                      +...+.
T Consensus       115 ~~~~~g  120 (172)
T PRK02603        115 IYHKRG  120 (172)
T ss_pred             HHHHcC
Confidence            765543

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.76  E-value=4.6e-08  Score=65.31  Aligned_cols=70  Identities=30%  Similarity=0.362  Sum_probs=63.3

Q ss_pred             hHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchH
Q 024531           90 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVK  169 (266)
Q Consensus        90 g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~  169 (266)
                      ...+++.++|+.|+..+++++.+.|.+..                 ++..+|.|+..+|++.+|+.+++++++.+|+++.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~-----------------~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~   64 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPE-----------------LWLQRARCLFQLGRYEEALEDLERALELSPDDPD   64 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccch-----------------hhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence            46789999999999999999999999766                 6999999999999999999999999999999988


Q ss_pred             HHHHHHH
Q 024531          170 ALFRRGK  176 (266)
Q Consensus       170 a~~~~g~  176 (266)
                      +...++.
T Consensus        65 ~~~~~a~   71 (73)
T PF13371_consen   65 ARALRAM   71 (73)
T ss_pred             HHHHHHh
Confidence            7765543

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.75  E-value=1e-06  Score=71.55  Aligned_cols=142  Identities=16%  Similarity=0.101  Sum_probs=104.7

Q ss_pred             HHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCC
Q 024531           86 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDE  165 (266)
Q Consensus        86 ~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p  165 (266)
                      .+-.|..+-..|.|++|++.|...++-+|.+...                 +--.-.+...+|+.-+||...+.-++.-+
T Consensus        89 ~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~-----------------~KRKlAilka~GK~l~aIk~ln~YL~~F~  151 (289)
T KOG3060|consen   89 GKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVI-----------------RKRKLAILKAQGKNLEAIKELNEYLDKFM  151 (289)
T ss_pred             HHHHHHHHHHhhchhhHHHHHHHHhccCcchhHH-----------------HHHHHHHHHHcCCcHHHHHHHHHHHHHhc
Confidence            3455777788899999999999999998876542                 33333444557777788888888888888


Q ss_pred             CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHhcccCCCCCCcccchhH
Q 024531          166 NNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEK--AVYKKQKEIYKGIFGPRPEPKQKKNWL  243 (266)
Q Consensus       166 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~--~~~~~~~~~~~k~~~~~~~~~~~~~~~  243 (266)
                      ++.+||..++.+|...|+|++|.-||+.++-+.|.|+.....++.+.--++  +..+..+++|.+.+...+  ....+|+
T Consensus       152 ~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~--~~~ral~  229 (289)
T KOG3060|consen  152 NDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP--KNLRALF  229 (289)
T ss_pred             CcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh--HhHHHHH
Confidence            888888888888888888888888888888888888888877777754443  334455667777765544  2234555


Q ss_pred             HHh
Q 024531          244 IIF  246 (266)
Q Consensus       244 ~~~  246 (266)
                      +|.
T Consensus       230 GI~  232 (289)
T KOG3060|consen  230 GIY  232 (289)
T ss_pred             HHH
Confidence            443

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.75  E-value=3.1e-07  Score=85.71  Aligned_cols=105  Identities=22%  Similarity=0.157  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531           80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  159 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~  159 (266)
                      ......+.+.+..+...|.|.+|+..|..++...+....                .+++++|.||+.+|.++.|+.+|.+
T Consensus       411 ~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~----------------~vw~~~a~c~~~l~e~e~A~e~y~k  474 (895)
T KOG2076|consen  411 SDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNA----------------FVWYKLARCYMELGEYEEAIEFYEK  474 (895)
T ss_pred             hhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccch----------------hhhHHHHHHHHHHhhHHHHHHHHHH
Confidence            345777889999999999999999999999887766432                2799999999999999999999999


Q ss_pred             HhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 024531          160 VLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE  200 (266)
Q Consensus       160 al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~  200 (266)
                      +|.++|++..+...++.++.++|+.++|.+.+.....-||.
T Consensus       475 vl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~  515 (895)
T KOG2076|consen  475 VLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGR  515 (895)
T ss_pred             HHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCcc
Confidence            99999999999999999999999999999999987744433

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.75  E-value=3.2e-08  Score=83.89  Aligned_cols=132  Identities=15%  Similarity=0.055  Sum_probs=89.1

Q ss_pred             HHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcC
Q 024531           84 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE  163 (266)
Q Consensus        84 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l  163 (266)
                      ..+......+...++++++...+.++....+...               ...++..+|.++.+.|++++|+.++++++++
T Consensus       111 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~---------------~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~  175 (280)
T PF13429_consen  111 RYLLSALQLYYRLGDYDEAEELLEKLEELPAAPD---------------SARFWLALAEIYEQLGDPDKALRDYRKALEL  175 (280)
T ss_dssp             -------H-HHHTT-HHHHHHHHHHHHH-T---T----------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            3344445556666777777777777654331100               1225778889999999999999999999999


Q ss_pred             CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 024531          164 DENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFG  231 (266)
Q Consensus       164 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~  231 (266)
                      +|+++.+...++.++...|+++++...+.......|.|+..+..++.+...+++..++... |.+.+.
T Consensus       176 ~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~-~~~~~~  242 (280)
T PF13429_consen  176 DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEY-LEKALK  242 (280)
T ss_dssp             -TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHH-HHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccc-cccccc
Confidence            9999999989999999999999888888888888888888888888888777776655544 566654

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.74  E-value=9.1e-07  Score=67.50  Aligned_cols=98  Identities=24%  Similarity=0.233  Sum_probs=83.4

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  162 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~  162 (266)
                      .......|..++..|+|++|+..|+.++...|+..              +...+.+.+|.+++..|++++|+..++. +.
T Consensus        48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~--------------l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~  112 (145)
T PF09976_consen   48 ALAALQLAKAAYEQGDYDEAKAALEKALANAPDPE--------------LKPLARLRLARILLQQGQYDEALATLQQ-IP  112 (145)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHH--------------HHHHHHHHHHHHHHHcCCHHHHHHHHHh-cc
Confidence            45556789999999999999999999999776532              2444788999999999999999999966 44


Q ss_pred             CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024531          163 EDENNVKALFRRGKARAELGQTDAAREDFLKAG  195 (266)
Q Consensus       163 l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al  195 (266)
                      -.+..+.++..+|.++...|++++|+..|++|+
T Consensus       113 ~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  113 DEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            455667788899999999999999999999885

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.74  E-value=1.9e-08  Score=68.21  Aligned_cols=64  Identities=25%  Similarity=0.294  Sum_probs=55.6

Q ss_pred             hhhhhhHHHHHHHhhCHHHHHHHHHhHhcC----CC---CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024531          134 NPCHLNMAACLLKLKRYEEAIGQCSLVLGE----DE---NNVKALFRRGKARAELGQTDAAREDFLKAGKF  197 (266)
Q Consensus       134 ~~~~~n~a~~~~~~~~~~~A~~~~~~al~l----~p---~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  197 (266)
                      ..++.++|.+|..+|+|++|+.+|++++.+    .+   ....+++++|.++..+|++++|++.+++++++
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            347999999999999999999999999965    22   23578999999999999999999999999976

...

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.68  E-value=4e-07  Score=82.36  Aligned_cols=149  Identities=19%  Similarity=0.136  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531           80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  159 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~  159 (266)
                      +..+..+...|..|...++|.+|+..|++|+.+.....     ++.    ..-.+.++.|+|..|.+.|++++|..+|++
T Consensus       238 l~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~-----G~~----h~~va~~l~nLa~ly~~~GKf~EA~~~~e~  308 (508)
T KOG1840|consen  238 LVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF-----GED----HPAVAATLNNLAVLYYKQGKFAEAEEYCER  308 (508)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc-----CCC----CHHHHHHHHHHHHHHhccCChHHHHHHHHH
Confidence            34445556789999999999999999999998764210     000    111344799999999999999999999999


Q ss_pred             HhcC--------CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCC---HHHHHHHHHHHHHHHHHHHHHH
Q 024531          160 VLGE--------DENNVKALFRRGKARAELGQTDAAREDFLKAGKFA-----PED---KSIARELRLLAEHEKAVYKKQK  223 (266)
Q Consensus       160 al~l--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-----p~~---~~~~~~l~~l~~~~~~~~~~~~  223 (266)
                      |+++        .|.-...+..++.++..++++++|...+++++++-     +.|   +.+...|+.++...+++.++. 
T Consensus       309 Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~-  387 (508)
T KOG1840|consen  309 ALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAE-  387 (508)
T ss_pred             HHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHH-
Confidence            9866        33345678899999999999999999999999973     233   677888888888888876554 


Q ss_pred             HHHhcccCCCCCCcc
Q 024531          224 EIYKGIFGPRPEPKQ  238 (266)
Q Consensus       224 ~~~~k~~~~~~~~~~  238 (266)
                      .+|++++........
T Consensus       388 ~~~k~ai~~~~~~~~  402 (508)
T KOG1840|consen  388 ELYKKAIQILRELLG  402 (508)
T ss_pred             HHHHHHHHHHHhccc
Confidence            457888765544433

>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated

Probab=98.68  E-value=3.7e-08  Score=77.31  Aligned_cols=59  Identities=24%  Similarity=0.376  Sum_probs=54.1

Q ss_pred             ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeecc
Q 024531            2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD   63 (266)
Q Consensus         2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~~   63 (266)
                      ++|.+ ++++||+.+|..|+.||.+.|.++|..+||..|.  .+.|||++++.|+|+|.++.
T Consensus       118 ~vg~~-~vi~Gl~e~L~~Mk~Ge~~~~~iP~~~AYG~~g~--~~~Ippns~L~f~IeL~~i~  176 (177)
T TIGR03516       118 KVDQQ-DLFSGLRDGLKLMKEGETATFLFPSHKAYGYYGD--QNKIGPNLPIISTVTLLNIK  176 (177)
T ss_pred             EeCCc-chhHHHHHHHcCCCCCCEEEEEECHHHcCCCCCC--CCCcCcCCcEEEEEEEEEec
Confidence            46876 7999999999999999999999999999999987  56799999999999999763

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.

>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.67  E-value=4.2e-08  Score=76.92  Aligned_cols=53  Identities=32%  Similarity=0.502  Sum_probs=49.3

Q ss_pred             ccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeec
Q 024531            8 KEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF   62 (266)
Q Consensus         8 ~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~   62 (266)
                      .||+||+.+|..|+.|++..++|+|.++||..|.  +..||||++++|+++|+++
T Consensus       152 ~vI~Gw~egl~~M~vG~k~~l~IP~~laYG~~g~--~g~Ippns~LvFeVeLl~v  204 (205)
T COG0545         152 GVIPGWDEGLQGMKVGGKRKLTIPPELAYGERGV--PGVIPPNSTLVFEVELLDV  204 (205)
T ss_pred             CeeehHHHHHhhCCCCceEEEEeCchhccCcCCC--CCCCCCCCeEEEEEEEEec
Confidence            7999999999999999999999999999999996  3449999999999999875

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.66  E-value=1.6e-07  Score=85.85  Aligned_cols=129  Identities=13%  Similarity=0.116  Sum_probs=103.8

Q ss_pred             HHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCC
Q 024531           85 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED  164 (266)
Q Consensus        85 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~  164 (266)
                      +.+..|...+.+++|.+|.++++.++++.|-...                 .++++|.|..+++++..|.++|.+.+.++
T Consensus       487 A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~-----------------~wf~~G~~ALqlek~q~av~aF~rcvtL~  549 (777)
T KOG1128|consen  487 AQRSLALLILSNKDFSEADKHLERSLEINPLQLG-----------------TWFGLGCAALQLEKEQAAVKAFHRCVTLE  549 (777)
T ss_pred             HHHhhccccccchhHHHHHHHHHHHhhcCccchh-----------------HHHhccHHHHHHhhhHHHHHHHHHHhhcC
Confidence            3455566667789999999999999999887544                 59999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 024531          165 ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFG  231 (266)
Q Consensus       165 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~  231 (266)
                      |++..+|.+++.+|+.+++-.+|...+..|++-+-+|..++.+...+.....+.+++-+. |..+..
T Consensus       550 Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A-~~rll~  615 (777)
T KOG1128|consen  550 PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKA-YHRLLD  615 (777)
T ss_pred             CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHH-HHHHHH
Confidence            999999999999999999999999999999999877766666666655544444443333 334433

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.66  E-value=7.9e-08  Score=80.56  Aligned_cols=146  Identities=14%  Similarity=0.154  Sum_probs=112.0

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhh-------hhchhHHHHH----------HHhhhhhhhhHHHHHH
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMF-------QLFGKYRDMA----------LAVKNPCHLNMAACLL  145 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~-------~~~~~~~~~~----------~~l~~~~~~n~a~~~~  145 (266)
                      +-.+...+.++-..+++++|++.|..+++..|.+.+.       ..-+...++.          ..-...++.|+|.|.+
T Consensus       290 VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~  369 (478)
T KOG1129|consen  290 VTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCL  369 (478)
T ss_pred             hhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHH
Confidence            3444566888888899999999999999998864322       0111222221          1122457999999999


Q ss_pred             HhhCHHHHHHHHHhHhcCCC---CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 024531          146 KLKRYEEAIGQCSLVLGEDE---NNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQ  222 (266)
Q Consensus       146 ~~~~~~~A~~~~~~al~l~p---~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~  222 (266)
                      -.+.++-++..+.+|+....   .-.+.||++|.+....|++.-|..+|+-+|.-||++.++..+|+.+..+.+...++ 
T Consensus       370 yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~A-  448 (478)
T KOG1129|consen  370 YAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGA-  448 (478)
T ss_pred             hhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHH-
Confidence            99999999999999997643   34678999999999999999999999999999999999999999997766665543 


Q ss_pred             HHHHhcc
Q 024531          223 KEIYKGI  229 (266)
Q Consensus       223 ~~~~~k~  229 (266)
                      +.++...
T Consensus       449 rsll~~A  455 (478)
T KOG1129|consen  449 RSLLNAA  455 (478)
T ss_pred             HHHHHHh
Confidence            3334443

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.66  E-value=4.8e-07  Score=79.50  Aligned_cols=109  Identities=24%  Similarity=0.180  Sum_probs=95.8

Q ss_pred             HHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCC
Q 024531           86 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDE  165 (266)
Q Consensus        86 ~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p  165 (266)
                      .-..|..++..++..+|++.+++++.++|+...                 +..|+|.++++.|++.+|+..++..+.-+|
T Consensus       343 ~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~-----------------l~~~~a~all~~g~~~eai~~L~~~~~~~p  405 (484)
T COG4783         343 LELAGDILLEANKAKEAIERLKKALALDPNSPL-----------------LQLNLAQALLKGGKPQEAIRILNRYLFNDP  405 (484)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhcCCCccH-----------------HHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence            345688999999999999999999999999655                 688999999999999999999999999999


Q ss_pred             CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024531          166 NNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL  211 (266)
Q Consensus       166 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l  211 (266)
                      +++..|..+|.+|..+|+-.+|...+-..+.+.-+-..+...+...
T Consensus       406 ~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A  451 (484)
T COG4783         406 EDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRA  451 (484)
T ss_pred             CCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            9999999999999999999888888888888877666555555544

>TIGR00540 hemY_coli hemY protein

Probab=98.64  E-value=2.8e-06  Score=76.10  Aligned_cols=134  Identities=12%  Similarity=0.019  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHH
Q 024531           79 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS  158 (266)
Q Consensus        79 ~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~  158 (266)
                      +...+......|...+..|+|..|.+...++.+..|....                 .+...|.+....|+++.|..++.
T Consensus        80 ~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~-----------------~~llaA~aa~~~g~~~~A~~~l~  142 (409)
T TIGR00540        80 KRRKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVL-----------------NLIKAAEAAQQRGDEARANQHLE  142 (409)
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHH-----------------HHHHHHHHHHHCCCHHHHHHHHH
Confidence            4556777788999999999999999999999998877443                 35667888888899999999999


Q ss_pred             hHhcCCCCch-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 024531          159 LVLGEDENNV-KALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIF  230 (266)
Q Consensus       159 ~al~l~p~~~-~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~  230 (266)
                      ++.+..|++. .+....+.++...|+++.|...++..++.+|+|+.+...+..+....+...+..+ .+....
T Consensus       143 ~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~-~l~~l~  214 (409)
T TIGR00540       143 EAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDD-IIDNMA  214 (409)
T ss_pred             HHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHH-HHHHHH
Confidence            9888888775 4555568888899999999999999999999999888888888777766654443 344444

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.63  E-value=8.3e-08  Score=66.07  Aligned_cols=78  Identities=22%  Similarity=0.165  Sum_probs=68.1

Q ss_pred             hhCHHHHHHHHHhHhcCCCC--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 024531          147 LKRYEEAIGQCSLVLGEDEN--NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKE  224 (266)
Q Consensus       147 ~~~~~~A~~~~~~al~l~p~--~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~  224 (266)
                      .|+|+.|+..++++++.+|.  +...++.+|.||+.+|+|++|+..+++ ...+|.+..+...++.+.-.+++.+++.+.
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            57899999999999999995  567788899999999999999999999 889999999999999998888888777665


Q ss_pred             H
Q 024531          225 I  225 (266)
Q Consensus       225 ~  225 (266)
                      +
T Consensus        81 l   81 (84)
T PF12895_consen   81 L   81 (84)
T ss_dssp             H
T ss_pred             H
Confidence            3

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.62  E-value=2.2e-07  Score=62.87  Aligned_cols=74  Identities=19%  Similarity=0.132  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531           80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  159 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~  159 (266)
                      +..+..+...|..++..|+|++|+..|++++++.......          ......++.|+|.|+..+|++++|+.++++
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~----------~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~   71 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDD----------HPDTANTLNNLGECYYRLGDYEEALEYYQK   71 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTH----------HHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCC----------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3457788999999999999999999999999884221110          122456799999999999999999999999


Q ss_pred             HhcC
Q 024531          160 VLGE  163 (266)
Q Consensus       160 al~l  163 (266)
                      ++++
T Consensus        72 al~i   75 (78)
T PF13424_consen   72 ALDI   75 (78)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            9875

...

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.62  E-value=1.3e-06  Score=79.92  Aligned_cols=121  Identities=16%  Similarity=0.022  Sum_probs=72.3

Q ss_pred             HHHHHHHHhHHHHhhcc---HHHHHHHHHHHHhhhccchhhh------------hc---hhH-HH---HHHH--------
Q 024531           82 AADRRKMDGNALFKEEK---LEEAMQQYEMAIAYMGDDFMFQ------------LF---GKY-RD---MALA--------  131 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~g~---~~~A~~~y~~al~~~~~~~~~~------------~~---~~~-~~---~~~~--------  131 (266)
                      .+-.++-+|..++..++   +..|+..|++|++++|+....-            ..   +.. ..   ....        
T Consensus       338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~  417 (517)
T PRK10153        338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN  417 (517)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence            34455667777766544   8899999999999999864310            00   000 00   0000        


Q ss_pred             hhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 024531          132 VKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKS  203 (266)
Q Consensus       132 l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~  203 (266)
                      ....+|.-+|..+...|++++|...+++|+.++| +..+|..+|.++...|++++|++.|++|+.++|.++.
T Consensus       418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            0112344555555566666666666666666666 3556666666666666666666666666666666553

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.62  E-value=1.1e-06  Score=79.61  Aligned_cols=119  Identities=15%  Similarity=0.075  Sum_probs=106.8

Q ss_pred             HHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcC
Q 024531           84 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE  163 (266)
Q Consensus        84 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l  163 (266)
                      ..+.......|..++|...++..+..|.-.|...+                 .+.-.|..+..+|+-++|...+..++..
T Consensus         8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHge-----------------slAmkGL~L~~lg~~~ea~~~vr~glr~   70 (700)
T KOG1156|consen    8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGE-----------------SLAMKGLTLNCLGKKEEAYELVRLGLRN   70 (700)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccch-----------------hHHhccchhhcccchHHHHHHHHHHhcc
Confidence            45677788889999999999999999998887554                 4677899999999999999999999999


Q ss_pred             CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 024531          164 DENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVY  219 (266)
Q Consensus       164 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~  219 (266)
                      |+.+.-+|.-+|.++....+|++|+++|+.|+.++|+|..++..++.+...++...
T Consensus        71 d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~  126 (700)
T KOG1156|consen   71 DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYE  126 (700)
T ss_pred             CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999999999999999998865555543

>TIGR00540 hemY_coli hemY protein

Probab=98.61  E-value=4.1e-07  Score=81.44  Aligned_cols=133  Identities=13%  Similarity=0.025  Sum_probs=105.2

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531           82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  161 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al  161 (266)
                      ........|..+...|+++.|...+.++++..|++...             .  ...-+....+..++...++..+++++
T Consensus       262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~-------------~--~~~l~~~~~l~~~~~~~~~~~~e~~l  326 (409)
T TIGR00540       262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAI-------------S--LPLCLPIPRLKPEDNEKLEKLIEKQA  326 (409)
T ss_pred             CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccc-------------h--hHHHHHhhhcCCCChHHHHHHHHHHH
Confidence            45666778899999999999999999999999986431             0  01223333444678899999999999


Q ss_pred             cCCCCch--HHHHHHHHHHHHcCCHHHHHHHHH--HHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 024531          162 GEDENNV--KALFRRGKARAELGQTDAAREDFL--KAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFG  231 (266)
Q Consensus       162 ~l~p~~~--~a~~~~g~~~~~~g~~~~A~~~~~--~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~  231 (266)
                      +.+|+++  ..+..+|.+++.+|+|++|.++|+  .+++.+|++.... .++.+....++..+ ...+|++.++
T Consensus       327 k~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~-~La~ll~~~g~~~~-A~~~~~~~l~  398 (409)
T TIGR00540       327 KNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA-MAADAFDQAGDKAE-AAAMRQDSLG  398 (409)
T ss_pred             HhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH-HHHHHHHHcCCHHH-HHHHHHHHHH
Confidence            9999999  888899999999999999999999  6888999877755 88888777776544 4556776543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.60  E-value=2.2e-07  Score=82.24  Aligned_cols=119  Identities=26%  Similarity=0.216  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhh---CHHH
Q 024531           76 VEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK---RYEE  152 (266)
Q Consensus        76 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~---~~~~  152 (266)
                      ..+.++.++..+..|+..|..+....|+..|.+++...|....                 +|.|+|.++++.+   +...
T Consensus       367 ~~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~-----------------~l~nraa~lmkRkW~~d~~~  429 (758)
T KOG1310|consen  367 FYELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIY-----------------LLENRAAALMKRKWRGDSYL  429 (758)
T ss_pred             hhhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhH-----------------HHHhHHHHHHhhhccccHHH
Confidence            4677889999999999999999999999999999999888443                 7999999999965   7888


Q ss_pred             HHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024531          153 AIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL  211 (266)
Q Consensus       153 A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l  211 (266)
                      |+.+|..|++++|...+|+|+++.++..++.+.+|+.+...+....|.+........-+
T Consensus       430 AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~~~v~~l  488 (758)
T KOG1310|consen  430 ALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDVARQNFVLCL  488 (758)
T ss_pred             HHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhhhhhhcc
Confidence            99999999999999999999999999999999999999998888888766555444333

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.60  E-value=1.3e-06  Score=72.72  Aligned_cols=121  Identities=15%  Similarity=0.082  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHH
Q 024531           99 LEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKAR  178 (266)
Q Consensus        99 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~  178 (266)
                      .+..+...+.-|..+|++..                 -+..+|.+|+.+|++..|...|.+|+++.|+|+..+.-+|.++
T Consensus       138 ~~~l~a~Le~~L~~nP~d~e-----------------gW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL  200 (287)
T COG4235         138 MEALIARLETHLQQNPGDAE-----------------GWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEAL  200 (287)
T ss_pred             HHHHHHHHHHHHHhCCCCch-----------------hHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            55566667777777887655                 3888999999999999999999999999999999999999998


Q ss_pred             HHcCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCc
Q 024531          179 AELGQ---TDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPK  237 (266)
Q Consensus       179 ~~~g~---~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~~~  237 (266)
                      +.+.+   ..++...|++++.+||+|..++..|+.-.-.++++.+ .-..+..|++..+..+
T Consensus       201 ~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~-A~~~Wq~lL~~lp~~~  261 (287)
T COG4235         201 YYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAE-AAAAWQMLLDLLPADD  261 (287)
T ss_pred             HHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHH-HHHHHHHHHhcCCCCC
Confidence            87654   5789999999999999999999999987666666654 4455899998766655

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.59  E-value=6.8e-07  Score=85.86  Aligned_cols=114  Identities=11%  Similarity=0.055  Sum_probs=94.1

Q ss_pred             hHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchH
Q 024531           90 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVK  169 (266)
Q Consensus        90 g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~  169 (266)
                      |..+...|+|++|+..|+++++.+|++..                 ++..++..+...++.++|+..+.+++..+|.+..
T Consensus       109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~-----------------~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~  171 (822)
T PRK14574        109 ARAYRNEKRWDQALALWQSSLKKDPTNPD-----------------LISGMIMTQADAGRGGVVLKQATELAERDPTVQN  171 (822)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHH-----------------HHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHH
Confidence            44666779999999999999999999765                 4678899999999999999999999999998555


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 024531          170 ALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKK  221 (266)
Q Consensus       170 a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~  221 (266)
                      . ..++.++..++++.+|+..|++++.++|++.++...+..+....+-...+
T Consensus       172 ~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a  222 (822)
T PRK14574        172 Y-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPA  222 (822)
T ss_pred             H-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHH
Confidence            4 45566666688887899999999999999999988777665554444333

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.59  E-value=6.8e-07  Score=78.16  Aligned_cols=100  Identities=15%  Similarity=-0.013  Sum_probs=86.8

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  162 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~  162 (266)
                      ...+...|..+...|++++|+..+.+++...|++..                 ++..+|.++...|++++|+..+.+++.
T Consensus       114 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~-----------------~~~~la~i~~~~g~~~eA~~~l~~~l~  176 (355)
T cd05804         114 WYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAW-----------------AVHAVAHVLEMQGRFKEGIAFMESWRD  176 (355)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcH-----------------HHHHHHHHHHHcCCHHHHHHHHHhhhh
Confidence            344556788999999999999999999999998755                 588999999999999999999999999


Q ss_pred             CCCCch----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 024531          163 EDENNV----KALFRRGKARAELGQTDAAREDFLKAGKFAP  199 (266)
Q Consensus       163 l~p~~~----~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p  199 (266)
                      ..|.++    ..++.+|.++..+|++++|+..|++++...|
T Consensus       177 ~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         177 TWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             ccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence            887433    3466899999999999999999999987777

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.56  E-value=1.7e-06  Score=75.66  Aligned_cols=148  Identities=13%  Similarity=0.036  Sum_probs=111.2

Q ss_pred             HHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhh-----------chhHHHHHHHh---------hhhhhhhHHHH
Q 024531           84 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQL-----------FGKYRDMALAV---------KNPCHLNMAAC  143 (266)
Q Consensus        84 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~-----------~~~~~~~~~~l---------~~~~~~n~a~~  143 (266)
                      +.....|..++..|++++|+..+.++++..|.+...-.           .+........+         ...++.++|.+
T Consensus        44 e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~  123 (355)
T cd05804          44 ERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFG  123 (355)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHH
Confidence            34556788999999999999999999999998653210           11111111111         12245678899


Q ss_pred             HHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH----HHHHHHHHHHHHHHH
Q 024531          144 LLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSI----ARELRLLAEHEKAVY  219 (266)
Q Consensus       144 ~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~----~~~l~~l~~~~~~~~  219 (266)
                      +...|++++|+..++++++++|+++.++..+|.++...|++++|+..+++++...|.++..    ...+..+...+++..
T Consensus       124 ~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~  203 (355)
T cd05804         124 LEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYE  203 (355)
T ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHH
Confidence            9999999999999999999999999999999999999999999999999999998864432    335677766666665


Q ss_pred             HHHHHHHhcccCC
Q 024531          220 KKQKEIYKGIFGP  232 (266)
Q Consensus       220 ~~~~~~~~k~~~~  232 (266)
                      +.. ..|......
T Consensus       204 ~A~-~~~~~~~~~  215 (355)
T cd05804         204 AAL-AIYDTHIAP  215 (355)
T ss_pred             HHH-HHHHHHhcc
Confidence            554 446776543

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.56  E-value=9.4e-07  Score=77.84  Aligned_cols=73  Identities=18%  Similarity=0.190  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHH
Q 024531           78 ERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQC  157 (266)
Q Consensus        78 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~  157 (266)
                      ..+..+..+.++|..++..|+|++|+..|+++|+++|++...              ..+++|+|.||..+|++++|+.++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA--------------~~A~yNLAcaya~LGr~dEAla~L  135 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEA--------------QAAYYNKACCHAYREEGKKAADCL  135 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHH--------------HHHHHHHHHHHHHcCCHHHHHHHH
Confidence            445668899999999999999999999999999999996531              125999999999999999999999


Q ss_pred             HhHhcCC
Q 024531          158 SLVLGED  164 (266)
Q Consensus       158 ~~al~l~  164 (266)
                      ++|+++.
T Consensus       136 rrALels  142 (453)
T PLN03098        136 RTALRDY  142 (453)
T ss_pred             HHHHHhc
Confidence            9999983

>PRK11906 transcriptional regulator; Provisional

Probab=98.55  E-value=2.2e-06  Score=75.61  Aligned_cols=132  Identities=15%  Similarity=0.103  Sum_probs=98.6

Q ss_pred             HHHHhHHHHhhc---cHHHHHHHHHHHH---hhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHh---------hCH
Q 024531           86 RKMDGNALFKEE---KLEEAMQQYEMAI---AYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKL---------KRY  150 (266)
Q Consensus        86 ~~~~g~~~~~~g---~~~~A~~~y~~al---~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~---------~~~  150 (266)
                      ++.+|...+..+   ....|+..|.+|+   .++|....                 +|..+|.||+..         ..-
T Consensus       258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~-----------------a~~~lA~~h~~~~~~g~~~~~~~~  320 (458)
T PRK11906        258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTE-----------------CYCLLAECHMSLALHGKSELELAA  320 (458)
T ss_pred             HHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHH-----------------HHHHHHHHHHHHHHhcCCCchHHH
Confidence            345555554443   4667888999999   77777444                 688888888775         135


Q ss_pred             HHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 024531          151 EEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIF  230 (266)
Q Consensus       151 ~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~  230 (266)
                      .+|.....+|+++||.|+.+++.+|.++...++++.|...|++|+.++|+.+.+....+.+.-.-++.+++. ....+.+
T Consensus       321 ~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~-~~i~~al  399 (458)
T PRK11906        321 QKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEAR-ICIDKSL  399 (458)
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHH-HHHHHHh
Confidence            678888899999999999999999999999999999999999999999999998888887654444444433 3356655


Q ss_pred             CCCCC
Q 024531          231 GPRPE  235 (266)
Q Consensus       231 ~~~~~  235 (266)
                      ...|.
T Consensus       400 rLsP~  404 (458)
T PRK11906        400 QLEPR  404 (458)
T ss_pred             ccCch
Confidence            55443

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.55  E-value=6.2e-06  Score=73.57  Aligned_cols=128  Identities=12%  Similarity=-0.010  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHH
Q 024531           78 ERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQC  157 (266)
Q Consensus        78 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~  157 (266)
                      .+...+......|...+..|+|+.|.+...++-+..+....                 .+...+.+..+.|+++.|..++
T Consensus        79 rr~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l-----------------~~llaA~aA~~~g~~~~A~~~l  141 (398)
T PRK10747         79 RKRRRARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQPVV-----------------NYLLAAEAAQQRGDEARANQHL  141 (398)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccchHH-----------------HHHHHHHHHHHCCCHHHHHHHH
Confidence            35567777888999999999999999777765554322111                 2444466668999999999999


Q ss_pred             HhHhcCCCCchHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 024531          158 SLVLGEDENNVKA-LFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQ  222 (266)
Q Consensus       158 ~~al~l~p~~~~a-~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~  222 (266)
                      .++.+.+|++..+ ....+..+...|++++|...++++.+.+|+|+.+...+..++...++-.+..
T Consensus       142 ~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~  207 (398)
T PRK10747        142 ERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLL  207 (398)
T ss_pred             HHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHH
Confidence            9999999987544 3456999999999999999999999999999999999998887776665444

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.55  E-value=7.2e-06  Score=68.89  Aligned_cols=64  Identities=16%  Similarity=0.139  Sum_probs=35.1

Q ss_pred             hhhHHHHHHHhhCHHHHHHHHHhHhcCCCCch-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 024531          137 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNV-KALFRRGKARAELGQTDAAREDFLKAGKFAPE  200 (266)
Q Consensus       137 ~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~-~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~  200 (266)
                      -.-+|.+++..|+|..|++.+..+++.||... .+.-.+..||.++|+.++....+.++.+..++
T Consensus       217 si~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g  281 (389)
T COG2956         217 SIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG  281 (389)
T ss_pred             hhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence            34455555555555555555555555555542 44445555555555555555555555555544

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.54  E-value=7.6e-07  Score=74.81  Aligned_cols=132  Identities=14%  Similarity=0.098  Sum_probs=88.6

Q ss_pred             HHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchh-------HHHHHH---------HhhhhhhhhHHHHHHHhhCH
Q 024531           87 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGK-------YRDMAL---------AVKNPCHLNMAACLLKLKRY  150 (266)
Q Consensus        87 ~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~-------~~~~~~---------~l~~~~~~n~a~~~~~~~~~  150 (266)
                      .+.|.+++..|-+.+|.+.++.+|...|....+-...+       ....+.         ...+..+...|.++..++++
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~  306 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQ  306 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhH
Confidence            46799999999999999999999998876432211000       000000         11233455667777777777


Q ss_pred             HHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 024531          151 EEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAV  218 (266)
Q Consensus       151 ~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~  218 (266)
                      ++|++.|+.+++++|.|.++.-..|.-|+.-++.+-|+.+|+++|++.-.+++...+++.|--.-++.
T Consensus       307 ~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~  374 (478)
T KOG1129|consen  307 EDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQI  374 (478)
T ss_pred             HHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcch
Confidence            77777777777777777777777777777777777777777777777777777777777764444443

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=98.52  E-value=7.5e-06  Score=62.37  Aligned_cols=114  Identities=22%  Similarity=0.178  Sum_probs=89.5

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhh-----chhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHH
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQL-----FGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQC  157 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~  157 (266)
                      ...+...|......++...++..+.+++.+...+.....     ..............+...++..+...|+++.|+..+
T Consensus         6 F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~   85 (146)
T PF03704_consen    6 FEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLL   85 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence            445556677778889999999999999998765443322     223444566677778889999999999999999999


Q ss_pred             HhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024531          158 SLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGK  196 (266)
Q Consensus       158 ~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~  196 (266)
                      .+++..+|.+..++..+-.+|..+|++.+|+..|+++..
T Consensus        86 ~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   86 QRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998754

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.51  E-value=3.1e-06  Score=71.04  Aligned_cols=150  Identities=14%  Similarity=0.047  Sum_probs=109.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccc--hhh---hh--chhHHHH-------H-------
Q 024531           71 RSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDD--FMF---QL--FGKYRDM-------A-------  129 (266)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~--~~~---~~--~~~~~~~-------~-------  129 (266)
                      +.+.+.+++   .-.+.++|..|+..|-++.|...|....+...-.  ...   ..  ....++.       +       
T Consensus        98 spdlT~~qr---~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~  174 (389)
T COG2956          98 SPDLTFEQR---LLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQT  174 (389)
T ss_pred             CCCCchHHH---HHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcc
Confidence            344455444   5567788999999999999999888876622110  000   00  0011111       0       


Q ss_pred             -HHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHH
Q 024531          130 -LAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED-KSIARE  207 (266)
Q Consensus       130 -~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~-~~~~~~  207 (266)
                       .-.....|..+|..+....+.+.|...+.+|+..||+...|-..+|.++...|+|+.|++.++.+++-||+. +++...
T Consensus       175 ~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~  254 (389)
T COG2956         175 YRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEM  254 (389)
T ss_pred             chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHH
Confidence             111233577888888889999999999999999999999999999999999999999999999999999984 778888


Q ss_pred             HHHHHHHHHHHHHHHH
Q 024531          208 LRLLAEHEKAVYKKQK  223 (266)
Q Consensus       208 l~~l~~~~~~~~~~~~  223 (266)
                      |..++..+++..+-..
T Consensus       255 L~~~Y~~lg~~~~~~~  270 (389)
T COG2956         255 LYECYAQLGKPAEGLN  270 (389)
T ss_pred             HHHHHHHhCCHHHHHH
Confidence            8888877776654443

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.50  E-value=2.4e-06  Score=78.34  Aligned_cols=147  Identities=14%  Similarity=0.088  Sum_probs=116.0

Q ss_pred             HHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhh----------hhchhHHHHHHHhhhhhhhhHHHHHHHh
Q 024531           78 ERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMF----------QLFGKYRDMALAVKNPCHLNMAACLLKL  147 (266)
Q Consensus        78 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~----------~~~~~~~~~~~~l~~~~~~n~a~~~~~~  147 (266)
                      ...+....+-....+|...|+-.+|...-.+-++.+|+...+          ...++..+-.+..+..+...+|......
T Consensus       419 ~I~Erlemw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~  498 (777)
T KOG1128|consen  419 VIFERLEMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSN  498 (777)
T ss_pred             HHHHhHHHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccc
Confidence            334556666667778888888888888877777744443222          1233344445566666667777777778


Q ss_pred             hCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 024531          148 KRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKE  224 (266)
Q Consensus       148 ~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~  224 (266)
                      ++|.++.++++..++++|-....||.+|.|..++++++.|..+|..++.++|+|.++++++...+.+.++..++-+.
T Consensus       499 ~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~  575 (777)
T KOG1128|consen  499 KDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRK  575 (777)
T ss_pred             hhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999988777665554444

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.50  E-value=1.9e-06  Score=78.11  Aligned_cols=123  Identities=15%  Similarity=0.039  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531           80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  159 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~  159 (266)
                      +.........|..++.+|+|+.|+..+..|++..-...-     ..    .........++|..|..++++.+|+..|++
T Consensus       196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G-----~~----hl~va~~l~~~a~~y~~~~k~~eAv~ly~~  266 (508)
T KOG1840|consen  196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSG-----LK----HLVVASMLNILALVYRSLGKYDEAVNLYEE  266 (508)
T ss_pred             chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccC-----cc----CHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            344555566999999999999999999999998321100     00    001122345799999999999999999999


Q ss_pred             HhcC--------CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCCHHHHHHHHHH
Q 024531          160 VLGE--------DENNVKALFRRGKARAELGQTDAAREDFLKAGKFA-----PEDKSIARELRLL  211 (266)
Q Consensus       160 al~l--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-----p~~~~~~~~l~~l  211 (266)
                      |+.+        +|....++.++|.+|...|+|++|..++++|+++-     ...+++...+..+
T Consensus       267 AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~  331 (508)
T KOG1840|consen  267 ALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSEL  331 (508)
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHH
Confidence            9955        55567789999999999999999999999999974     3345555555444

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.50  E-value=2e-06  Score=76.75  Aligned_cols=129  Identities=12%  Similarity=-0.044  Sum_probs=102.8

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531           82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  161 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al  161 (266)
                      ........+..+...|+.+.|.....+++...++ ..                 +.  +.......+++++++..+++.+
T Consensus       262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~-~~-----------------l~--~l~~~l~~~~~~~al~~~e~~l  321 (398)
T PRK10747        262 QVALQVAMAEHLIECDDHDTAQQIILDGLKRQYD-ER-----------------LV--LLIPRLKTNNPEQLEKVLRQQI  321 (398)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-HH-----------------HH--HHHhhccCCChHHHHHHHHHHH
Confidence            4445566788999999999999999999995443 22                 11  1222234589999999999999


Q ss_pred             cCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 024531          162 GEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGP  232 (266)
Q Consensus       162 ~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~  232 (266)
                      +.+|+++..++.+|.++...++|++|.+.|+++++.+|++.... .+..+...+++.+++ ...|++-+..
T Consensus       322 k~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~-~La~~~~~~g~~~~A-~~~~~~~l~~  390 (398)
T PRK10747        322 KQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYA-WLADALDRLHKPEEA-AAMRRDGLML  390 (398)
T ss_pred             hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHcCCHHHH-HHHHHHHHhh
Confidence            99999999999999999999999999999999999999977644 688887777776555 5557776554

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.49  E-value=1.1e-05  Score=66.02  Aligned_cols=122  Identities=15%  Similarity=0.090  Sum_probs=100.4

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  162 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~  162 (266)
                      +..+++.|...++.|+|.+|++.|.......|..+.              ...+...++.++++.++++.|+...++-+.
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~--------------~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~   99 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPY--------------SEQAQLDLAYAYYKNGEYDLALAYIDRFIR   99 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc--------------cHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            778999999999999999999999999999988654              233788999999999999999999999999


Q ss_pred             CCCCchH---HHHHHHHHHHHcCCH--------HHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHHHHH
Q 024531          163 EDENNVK---ALFRRGKARAELGQT--------DAAREDFLKAGKFAPED---KSIARELRLLAEHEKAV  218 (266)
Q Consensus       163 l~p~~~~---a~~~~g~~~~~~g~~--------~~A~~~~~~al~l~p~~---~~~~~~l~~l~~~~~~~  218 (266)
                      +.|.++.   ++|.+|.+++..=+.        .+|...|+..+.--|+.   +++...+..+...+.+.
T Consensus       100 lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~  169 (254)
T COG4105         100 LYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGH  169 (254)
T ss_pred             hCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHH
Confidence            9998764   688899998755433        78999999999999986   45555555554444443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.47  E-value=1.3e-06  Score=73.11  Aligned_cols=101  Identities=18%  Similarity=0.220  Sum_probs=80.9

Q ss_pred             hhhhHHHHH-HHhhCHHHHHHHHHhHhcCCCCc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHH
Q 024531          136 CHLNMAACL-LKLKRYEEAIGQCSLVLGEDENN---VKALFRRGKARAELGQTDAAREDFLKAGKFAPED---KSIAREL  208 (266)
Q Consensus       136 ~~~n~a~~~-~~~~~~~~A~~~~~~al~l~p~~---~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~l  208 (266)
                      ..++.|..+ ++.|+|++|+..|+..+...|++   +.++|++|.+|+..|+|++|+..|++++...|++   ++++..+
T Consensus       144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl  223 (263)
T PRK10803        144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV  223 (263)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence            567788876 56799999999999999999998   5899999999999999999999999999999985   5666666


Q ss_pred             HHHHHHHHHHHHHHHHHHhcccCCCCCCc
Q 024531          209 RLLAEHEKAVYKKQKEIYKGIFGPRPEPK  237 (266)
Q Consensus       209 ~~l~~~~~~~~~~~~~~~~k~~~~~~~~~  237 (266)
                      +.+...++.. ++.+..|.++....|...
T Consensus       224 g~~~~~~g~~-~~A~~~~~~vi~~yP~s~  251 (263)
T PRK10803        224 GVIMQDKGDT-AKAKAVYQQVIKKYPGTD  251 (263)
T ss_pred             HHHHHHcCCH-HHHHHHHHHHHHHCcCCH
Confidence            6666555444 455555777776555543

>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=3.2e-07  Score=73.66  Aligned_cols=53  Identities=36%  Similarity=0.683  Sum_probs=50.0

Q ss_pred             CccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeec
Q 024531            7 KKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF   62 (266)
Q Consensus         7 ~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~   62 (266)
                      ++||+|||.++..|+.|-+..++|.|.++||..|.   +.||||+++.|.|+|+.+
T Consensus       173 g~VIkG~d~gv~GMkvGGkRrviIPp~lgYg~~g~---~~IppnstL~fdVEL~~v  225 (226)
T KOG0552|consen  173 GEVIKGWDVGVEGMKVGGKRRVIIPPELGYGKKGV---PEIPPNSTLVFDVELLSV  225 (226)
T ss_pred             CCCCchHHHhhhhhccCCeeEEEeCccccccccCc---CcCCCCCcEEEEEEEEec
Confidence            47999999999999999999999999999999997   689999999999999865

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.43  E-value=4.3e-07  Score=51.01  Aligned_cols=34  Identities=26%  Similarity=0.464  Sum_probs=27.4

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 024531          168 VKALFRRGKARAELGQTDAAREDFLKAGKFAPED  201 (266)
Q Consensus       168 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~  201 (266)
                      +++|+++|.+|..+|++++|+.+|+++++++|+|
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            3678888888888888888888888888888864

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.43  E-value=1.6e-05  Score=64.25  Aligned_cols=117  Identities=19%  Similarity=0.125  Sum_probs=90.8

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhC-----------HH
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR-----------YE  151 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~-----------~~  151 (266)
                      .+.....|..+++.|+|..|+..|++.+...|....              ...+++.+|.+++.+..           ..
T Consensus        42 ~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~--------------~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~  107 (203)
T PF13525_consen   42 PQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK--------------ADYALYMLGLSYYKQIPGILRSDRDQTSTR  107 (203)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT--------------HHHHHHHHHHHHHHHHHHHH-TT---HHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc--------------hhhHHHHHHHHHHHhCccchhcccChHHHH
Confidence            345678899999999999999999999999998654              23368888888776543           45


Q ss_pred             HHHHHHHhHhcCCCCchH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024531          152 EAIGQCSLVLGEDENNVK-----------------ALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAE  213 (266)
Q Consensus       152 ~A~~~~~~al~l~p~~~~-----------------a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  213 (266)
                      +|+..++..+...|++..                 --+..|.-|.+.|.|..|+.-++.+++--|+.+.+...|..+.+
T Consensus       108 ~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~  186 (203)
T PF13525_consen  108 KAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAE  186 (203)
T ss_dssp             HHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHH
Confidence            899999999999998632                 24457999999999999999999999999998766666655543

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.41  E-value=2.5e-06  Score=75.16  Aligned_cols=96  Identities=16%  Similarity=0.103  Sum_probs=72.2

Q ss_pred             HhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCch
Q 024531           89 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNV  168 (266)
Q Consensus        89 ~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~  168 (266)
                      .+..+...++-.+|++...+++...|.+..                 ++...|..++..++++.|+..+++++.+.|++.
T Consensus       206 LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~-----------------LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f  268 (395)
T PF09295_consen  206 LARVYLLMNEEVEAIRLLNEALKENPQDSE-----------------LLNLQAEFLLSKKKYELALEIAKKAVELSPSEF  268 (395)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhH
Confidence            355555556666666666666666655433                 567788888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 024531          169 KALFRRGKARAELGQTDAAREDFLKAGKFAPED  201 (266)
Q Consensus       169 ~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~  201 (266)
                      +.|+.++.||..+|+|+.|+..++.+--..+.+
T Consensus       269 ~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~~~  301 (395)
T PF09295_consen  269 ETWYQLAECYIQLGDFENALLALNSCPMLTYKD  301 (395)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHhcCcCCCCcc
Confidence            999999999999999999998877655443333

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.40  E-value=6.5e-06  Score=75.97  Aligned_cols=127  Identities=13%  Similarity=0.016  Sum_probs=110.6

Q ss_pred             HHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCC
Q 024531           87 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDEN  166 (266)
Q Consensus        87 ~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~  166 (266)
                      ...|..+...+.-++|.....++-.++|....                 .|+.+|.++...|.+.+|...|..|+.+||+
T Consensus       654 llaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~-----------------~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~  716 (799)
T KOG4162|consen  654 LLAADLFLLSGNDDEARSCLLEASKIDPLSAS-----------------VYYLRGLLLEVKGQLEEAKEAFLVALALDPD  716 (799)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhcchhhHH-----------------HHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC
Confidence            34566666777788888899999888887555                 5899999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHcCCHHHHHH--HHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 024531          167 NVKALFRRGKARAELGQTDAARE--DFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFG  231 (266)
Q Consensus       167 ~~~a~~~~g~~~~~~g~~~~A~~--~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~  231 (266)
                      ++.+...+|.++...|+-.-|..  .+..+++++|.|.+++..++.+.+.++...++..- |.....
T Consensus       717 hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaec-f~aa~q  782 (799)
T KOG4162|consen  717 HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAEC-FQAALQ  782 (799)
T ss_pred             CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHH-HHHHHh
Confidence            99999999999999999988888  99999999999999999999999888888766655 444443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.39  E-value=6.7e-06  Score=60.36  Aligned_cols=91  Identities=20%  Similarity=0.097  Sum_probs=75.9

Q ss_pred             hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCC---chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHH
Q 024531          136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDEN---NVKALFRRGKARAELGQTDAAREDFLKAGKFAPE---DKSIARELR  209 (266)
Q Consensus       136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~---~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~---~~~~~~~l~  209 (266)
                      +.+++|.++..+|+.++|+..|++++.....   ...++..+|.++..+|++++|+..++.++.-.|+   +..+...+.
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A   82 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA   82 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence            6889999999999999999999999987544   3578999999999999999999999999999898   777777767


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 024531          210 LLAEHEKAVYKKQKEIY  226 (266)
Q Consensus       210 ~l~~~~~~~~~~~~~~~  226 (266)
                      .+....++..+.-....
T Consensus        83 l~L~~~gr~~eAl~~~l   99 (120)
T PF12688_consen   83 LALYNLGRPKEALEWLL   99 (120)
T ss_pred             HHHHHCCCHHHHHHHHH
Confidence            66555566555555443

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.39  E-value=5.9e-06  Score=70.24  Aligned_cols=109  Identities=21%  Similarity=0.188  Sum_probs=84.5

Q ss_pred             HHHHHHHHHhHHHHhh-ccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531           81 GAADRRKMDGNALFKE-EKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  159 (266)
Q Consensus        81 ~~~~~~~~~g~~~~~~-g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~  159 (266)
                      ..+..+...|..+... |+++.|+..|++|+++......           ......++.++|.++.++|+|++|+..|.+
T Consensus       112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~-----------~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~  180 (282)
T PF14938_consen  112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS-----------PHSAAECLLKAADLYARLGRYEEAIEIYEE  180 (282)
T ss_dssp             HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT------------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC-----------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            4467777889999888 9999999999999998754322           112344788999999999999999999999


Q ss_pred             HhcCCCC------ch-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 024531          160 VLGEDEN------NV-KALFRRGKARAELGQTDAAREDFLKAGKFAPE  200 (266)
Q Consensus       160 al~l~p~------~~-~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~  200 (266)
                      +....-+      +. ..++..+.|+...||+..|...+++....+|.
T Consensus       181 ~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~  228 (282)
T PF14938_consen  181 VAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS  228 (282)
T ss_dssp             HHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred             HHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            8764322      23 34578899999999999999999999999985

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.39  E-value=1e-06  Score=52.66  Aligned_cols=42  Identities=29%  Similarity=0.318  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024531          169 KALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRL  210 (266)
Q Consensus       169 ~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~  210 (266)
                      .+++.+|.+|..+|++++|++.|+++++.+|+|+.++..|..
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            567788888888888888888888888888888888776654

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.36  E-value=1.1e-06  Score=49.15  Aligned_cols=34  Identities=32%  Similarity=0.434  Sum_probs=29.5

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 024531          168 VKALFRRGKARAELGQTDAAREDFLKAGKFAPED  201 (266)
Q Consensus       168 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~  201 (266)
                      +++++.+|.+++.+|+|++|+.+|+++++++|+|
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            4678999999999999999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.36  E-value=1.2e-06  Score=74.13  Aligned_cols=98  Identities=17%  Similarity=0.049  Sum_probs=82.1

Q ss_pred             hhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 024531          137 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEK  216 (266)
Q Consensus       137 ~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~  216 (266)
                      +-..|.-|+++|.|++|+++|.+++.++|.|+-.+.++|.+|+.+..|..|..++..|+.++.....+....+.....++
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            35689999999999999999999999999999999999999999999999999999999999877666655555555555


Q ss_pred             HHHHHHHHHHhcccCCCCC
Q 024531          217 AVYKKQKEIYKGIFGPRPE  235 (266)
Q Consensus       217 ~~~~~~~~~~~k~~~~~~~  235 (266)
                      ... +.++++..++...++
T Consensus       180 ~~~-EAKkD~E~vL~LEP~  197 (536)
T KOG4648|consen  180 NNM-EAKKDCETVLALEPK  197 (536)
T ss_pred             hHH-HHHHhHHHHHhhCcc
Confidence            544 445567888877666

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.34  E-value=4.7e-07  Score=50.88  Aligned_cols=34  Identities=15%  Similarity=0.072  Sum_probs=31.6

Q ss_pred             HHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHH
Q 024531          156 QCSLVLGEDENNVKALFRRGKARAELGQTDAARE  189 (266)
Q Consensus       156 ~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~  189 (266)
                      .|+++|+++|+++.+|+++|.+|...|++++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            3789999999999999999999999999999963

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.32  E-value=1.1e-05  Score=71.11  Aligned_cols=107  Identities=16%  Similarity=0.051  Sum_probs=97.9

Q ss_pred             hccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHH
Q 024531           96 EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRG  175 (266)
Q Consensus        96 ~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g  175 (266)
                      .++++.|+..+.+....+|+                    +...+|.+++..++..+|+...++++...|.+...+...+
T Consensus       182 t~~~~~ai~lle~L~~~~pe--------------------v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa  241 (395)
T PF09295_consen  182 TQRYDEAIELLEKLRERDPE--------------------VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQA  241 (395)
T ss_pred             cccHHHHHHHHHHHHhcCCc--------------------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            46789999999998888776                    3556899999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 024531          176 KARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQ  222 (266)
Q Consensus       176 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~  222 (266)
                      ..+...++++.|+...+++..+.|++...+..|+.++...++.+.+.
T Consensus       242 ~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~AL  288 (395)
T PF09295_consen  242 EFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENAL  288 (395)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHH
Confidence            99999999999999999999999999999999999999888887763

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.32  E-value=3.3e-05  Score=60.23  Aligned_cols=148  Identities=13%  Similarity=0.157  Sum_probs=109.6

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhh-ccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYM-GDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  161 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~-~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al  161 (266)
                      ......+|+.+...|++.+|..+|++++.-. ..+..                 .+..+|.+.+..+++..|...+++..
T Consensus        89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a-----------------~lLglA~Aqfa~~~~A~a~~tLe~l~  151 (251)
T COG4700          89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAA-----------------MLLGLAQAQFAIQEFAAAQQTLEDLM  151 (251)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHH-----------------HHHHHHHHHHhhccHHHHHHHHHHHh
Confidence            4455678999999999999999999999753 23332                 58899999999999999999999999


Q ss_pred             cCCCC--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCccc
Q 024531          162 GEDEN--NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQK  239 (266)
Q Consensus       162 ~l~p~--~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~  239 (266)
                      +.+|.  .+..+...|.++..+|.+.+|...|+.++...|+ +.++.........+.+..+...+ |..+++...  ...
T Consensus       152 e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq-~~~v~d~~~--r~~  227 (251)
T COG4700         152 EYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQ-YVAVVDTAK--RSR  227 (251)
T ss_pred             hcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHH-HHHHHHHHH--hcc
Confidence            99885  5678888999999999999999999999999998 55555566655555544333333 344442111  111


Q ss_pred             chhHHHhHHHHH
Q 024531          240 KNWLIIFWQLLV  251 (266)
Q Consensus       240 ~~~~~~~~~~~~  251 (266)
                      .-|++..-.|+.
T Consensus       228 ~H~rkh~reW~~  239 (251)
T COG4700         228 PHYRKHHREWIK  239 (251)
T ss_pred             hhHHHHHHHHHH
Confidence            345555555544

>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional

Probab=98.31  E-value=1.2e-06  Score=70.57  Aligned_cols=53  Identities=28%  Similarity=0.498  Sum_probs=49.9

Q ss_pred             ccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeec
Q 024531            8 KEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF   62 (266)
Q Consensus         8 ~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~   62 (266)
                      .+|+||+.+|..|+.|+...|.|+|..+||..|.  .+.|||+++++|+|+|.++
T Consensus       153 ~vipG~~eaL~~M~~G~k~~~~IP~~lAYG~~g~--~~~Ipp~s~Lif~veLl~i  205 (206)
T PRK11570        153 GVIPGWIEALTLMPVGSKWELTIPHELAYGERGA--GASIPPFSTLVFEVELLEI  205 (206)
T ss_pred             chhhHHHHHHcCCCCCCEEEEEECHHHcCCCCCC--CCCcCCCCeEEEEEEEEEE
Confidence            5899999999999999999999999999999997  5789999999999999875

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.30  E-value=6.8e-06  Score=71.02  Aligned_cols=100  Identities=12%  Similarity=0.077  Sum_probs=87.5

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  162 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~  162 (266)
                      ...+.+.+.++.+.++|..|+...+++|.+.|++..                 +++-+|.++..+|+|+.|+.+|++|++
T Consensus       257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~K-----------------ALyRrG~A~l~~~e~~~A~~df~ka~k  319 (397)
T KOG0543|consen  257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVK-----------------ALYRRGQALLALGEYDLARDDFQKALK  319 (397)
T ss_pred             HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchh-----------------HHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            445678899999999999999999999999999544                 799999999999999999999999999


Q ss_pred             CCCCchHHHHHHHHHHHHcCCHHHH-HHHHHHHHhhCC
Q 024531          163 EDENNVKALFRRGKARAELGQTDAA-REDFLKAGKFAP  199 (266)
Q Consensus       163 l~p~~~~a~~~~g~~~~~~g~~~~A-~~~~~~al~l~p  199 (266)
                      ++|+|-.+...+..|.....++.+. .+.|.+.+..-+
T Consensus       320 ~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  320 LEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA  357 (397)
T ss_pred             hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            9999998888899888888877666 666777776544

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.30  E-value=5.5e-06  Score=65.14  Aligned_cols=100  Identities=22%  Similarity=0.144  Sum_probs=82.6

Q ss_pred             hhhHHHHHHHhhCHHHHHHHHHhHhcCCCCc-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024531          137 HLNMAACLLKLKRYEEAIGQCSLVLGEDENN-----VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL  211 (266)
Q Consensus       137 ~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~-----~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l  211 (266)
                      +-.-|.-+++.|+|.+|..-|..||.+.|.-     ...|.++|.|+++++.++.|+.++.++++++|.+..++.-.+.+
T Consensus        98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea  177 (271)
T KOG4234|consen   98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA  177 (271)
T ss_pred             HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence            3345777889999999999999999999864     34677999999999999999999999999999988887766777


Q ss_pred             HHHHHHHHHHHHHHHhcccCCCCCCc
Q 024531          212 AEHEKAVYKKQKEIYKGIFGPRPEPK  237 (266)
Q Consensus       212 ~~~~~~~~~~~~~~~~k~~~~~~~~~  237 (266)
                      +.....++.+ -.+|++++...|...
T Consensus       178 yek~ek~eea-leDyKki~E~dPs~~  202 (271)
T KOG4234|consen  178 YEKMEKYEEA-LEDYKKILESDPSRR  202 (271)
T ss_pred             HHhhhhHHHH-HHHHHHHHHhCcchH
Confidence            7777555544 456899998766554

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.29  E-value=2.5e-05  Score=67.74  Aligned_cols=152  Identities=13%  Similarity=0.044  Sum_probs=73.0

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhh--------hchhHHHHHHH--hhhhhhhhHHHHHHHhh---
Q 024531           82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQ--------LFGKYRDMALA--VKNPCHLNMAACLLKLK---  148 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~--------~~~~~~~~~~~--l~~~~~~n~a~~~~~~~---  148 (266)
                      ....+.-.|+.+.+.++..+|+-.|..|+.+.|......        -.+...+.+..  -...++-+-|.++.-.|   
T Consensus       333 ~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V  412 (564)
T KOG1174|consen  333 NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLV  412 (564)
T ss_pred             cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhccee
Confidence            345566678888888888888888888888877643320        01111110000  00111111122222222   


Q ss_pred             ------CHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 024531          149 ------RYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQ  222 (266)
Q Consensus       149 ------~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~  222 (266)
                            .-++|...++++|+++|.+..|...+|..+..-|.+.+++..++++|...|+. ..+..|+.+-....+..++-
T Consensus       413 ~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am  491 (564)
T KOG1174|consen  413 LFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAM  491 (564)
T ss_pred             eccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHH
Confidence                  13456666666666666665555555555555555555555555555544442 22333444433343333333


Q ss_pred             HHHHhcccCCCCC
Q 024531          223 KEIYKGIFGPRPE  235 (266)
Q Consensus       223 ~~~~~k~~~~~~~  235 (266)
                      .. |++.+...|.
T Consensus       492 ~~-y~~ALr~dP~  503 (564)
T KOG1174|consen  492 EY-YYKALRQDPK  503 (564)
T ss_pred             HH-HHHHHhcCcc
Confidence            22 3444444333

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.29  E-value=8.8e-06  Score=74.63  Aligned_cols=36  Identities=6%  Similarity=-0.142  Sum_probs=31.6

Q ss_pred             hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHH
Q 024531          136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKAL  171 (266)
Q Consensus       136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~  171 (266)
                      +|..+|.++...|++++|+..|.+|+.++|.++..+
T Consensus       455 a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~  490 (517)
T PRK10153        455 NYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLY  490 (517)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHH
Confidence            688889999999999999999999999999888533

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.29  E-value=4.7e-06  Score=70.93  Aligned_cols=120  Identities=15%  Similarity=0.107  Sum_probs=81.9

Q ss_pred             HHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHH--Hhh--CHHHHHHHHHhHhcCCCC
Q 024531           91 NALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLL--KLK--RYEEAIGQCSLVLGEDEN  166 (266)
Q Consensus        91 ~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~--~~~--~~~~A~~~~~~al~l~p~  166 (266)
                      .++...++++.|.+.+...-+.+.+.                   ...+++.++.  ..|  .+.+|...|+......|.
T Consensus       139 qi~L~~~R~dlA~k~l~~~~~~~eD~-------------------~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~  199 (290)
T PF04733_consen  139 QILLKMNRPDLAEKELKNMQQIDEDS-------------------ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGS  199 (290)
T ss_dssp             HHHHHTT-HHHHHHHHHHHHCCSCCH-------------------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCcH-------------------HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCC
Confidence            34455566666666665555444332                   3445554443  344  588999999998888788


Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 024531          167 NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGI  229 (266)
Q Consensus       167 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~  229 (266)
                      ++..+..++.|++.+|+|++|.+.++.++..+|+++++..++..+...+++..+...+....+
T Consensus       200 t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL  262 (290)
T PF04733_consen  200 TPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL  262 (290)
T ss_dssp             SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence            889999999999999999999999999999999999999998888777666644444444443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PRK15331 chaperone protein SicA; Provisional

Probab=98.26  E-value=4.7e-06  Score=63.83  Aligned_cols=95  Identities=12%  Similarity=-0.114  Sum_probs=84.9

Q ss_pred             hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 024531          136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE  215 (266)
Q Consensus       136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  215 (266)
                      ..+..|.-++..|++++|...|+-...+||.+++.++.+|.|+..+++|++|+..|..+..++++|+......+.|.-.+
T Consensus        39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l  118 (165)
T PRK15331         39 GLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLM  118 (165)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHh
Confidence            36678889999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHHHhcccC
Q 024531          216 KAVYKKQKEIYKGIFG  231 (266)
Q Consensus       216 ~~~~~~~~~~~~k~~~  231 (266)
                      ++...+... |.-+..
T Consensus       119 ~~~~~A~~~-f~~a~~  133 (165)
T PRK15331        119 RKAAKARQC-FELVNE  133 (165)
T ss_pred             CCHHHHHHH-HHHHHh
Confidence            887766665 444444

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.25  E-value=3.6e-05  Score=70.39  Aligned_cols=96  Identities=15%  Similarity=0.138  Sum_probs=70.0

Q ss_pred             hhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 024531          137 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEK  216 (266)
Q Consensus       137 ~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~  216 (266)
                      ++.+|+.|...|++++|+.+.++||...|..++.|+..|.++-..|++.+|.+.++.|..+|+.|.-+......-.-+-+
T Consensus       197 ~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~  276 (517)
T PF12569_consen  197 LYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAG  276 (517)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCC
Confidence            35668888888888888888888888888888888888888888888888888888888888887666555554433344


Q ss_pred             HHHHHHHHHHhcccCCCC
Q 024531          217 AVYKKQKEIYKGIFGPRP  234 (266)
Q Consensus       217 ~~~~~~~~~~~k~~~~~~  234 (266)
                      +.+++.+- . .+|....
T Consensus       277 ~~e~A~~~-~-~~Ftr~~  292 (517)
T PF12569_consen  277 RIEEAEKT-A-SLFTRED  292 (517)
T ss_pred             CHHHHHHH-H-HhhcCCC
Confidence            44434333 2 4554433

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK11906 transcriptional regulator; Provisional

Probab=98.25  E-value=7.9e-06  Score=72.22  Aligned_cols=89  Identities=9%  Similarity=-0.070  Sum_probs=82.4

Q ss_pred             ccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHH
Q 024531           97 EKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGK  176 (266)
Q Consensus        97 g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~  176 (266)
                      .+-.+|.+.-.+|++++|.++.                 ++..+|.+....++++.|+..+++|+.++|+.+.++|..|.
T Consensus       318 ~~~~~a~~~A~rAveld~~Da~-----------------a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~  380 (458)
T PRK11906        318 LAAQKALELLDYVSDITTVDGK-----------------ILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRAL  380 (458)
T ss_pred             HHHHHHHHHHHHHHhcCCCCHH-----------------HHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHH
Confidence            4567788889999999999876                 68899999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCH
Q 024531          177 ARAELGQTDAAREDFLKAGKFAPEDK  202 (266)
Q Consensus       177 ~~~~~g~~~~A~~~~~~al~l~p~~~  202 (266)
                      ++...|+.++|.+.++++++++|.-.
T Consensus       381 ~~~~~G~~~~a~~~i~~alrLsP~~~  406 (458)
T PRK11906        381 VHFHNEKIEEARICIDKSLQLEPRRR  406 (458)
T ss_pred             HHHHcCCHHHHHHHHHHHhccCchhh
Confidence            99999999999999999999999743

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.24  E-value=9.7e-06  Score=70.21  Aligned_cols=137  Identities=12%  Similarity=0.006  Sum_probs=115.3

Q ss_pred             HHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCC
Q 024531           85 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED  164 (266)
Q Consensus        85 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~  164 (266)
                      .+.--|..+|...+|..|+..-.++|+.+|....                 ++...|..+..+++..+|+-.|+.|..+.
T Consensus       302 ~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~-----------------alilKG~lL~~~~R~~~A~IaFR~Aq~La  364 (564)
T KOG1174|consen  302 HWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHE-----------------ALILKGRLLIALERHTQAVIAFRTAQMLA  364 (564)
T ss_pred             hhhhhhhhhhhhhhHHHHHHHHHHHhccCcccch-----------------HHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence            3344577788889999999999999999998544                 68889999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHhcccCCCCCCcc
Q 024531          165 ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELR-LLAEHEKAVYKKQKEIYKGIFGPRPEPKQ  238 (266)
Q Consensus       165 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~-~l~~~~~~~~~~~~~~~~k~~~~~~~~~~  238 (266)
                      |.+...|--+-.+|...|.+.+|...-+.++..-|.+...+..++ .+.----..+++.++.+.+-+...|.-.+
T Consensus       365 p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~  439 (564)
T KOG1174|consen  365 PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTP  439 (564)
T ss_pred             hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHH
Confidence            999999999999999999999999999999999999999988885 44444445566777888888776665443

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.20  E-value=2.5e-05  Score=75.00  Aligned_cols=112  Identities=13%  Similarity=0.017  Sum_probs=92.6

Q ss_pred             HHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh--
Q 024531           84 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL--  161 (266)
Q Consensus        84 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al--  161 (266)
                      ..++.+|.+|-+.|++++|...|.++|+++|+++.                 +++|+|..|... +.++|+.++.+|+  
T Consensus       117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~-----------------aLNn~AY~~ae~-dL~KA~~m~~KAV~~  178 (906)
T PRK14720        117 LALRTLAEAYAKLNENKKLKGVWERLVKADRDNPE-----------------IVKKLATSYEEE-DKEKAITYLKKAIYR  178 (906)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHH-----------------HHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence            57788999999999999999999999999998766                 577788777777 7777777777766  


Q ss_pred             ------------------cCCCCchHHHH--------HHH------------HHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 024531          162 ------------------GEDENNVKALF--------RRG------------KARAELGQTDAAREDFLKAGKFAPEDKS  203 (266)
Q Consensus       162 ------------------~l~p~~~~a~~--------~~g------------~~~~~~g~~~~A~~~~~~al~l~p~~~~  203 (266)
                                        ..+|++...++        .++            .+|...++|++++..++.+|+++|.|.-
T Consensus       179 ~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~  258 (906)
T PRK14720        179 FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNK  258 (906)
T ss_pred             HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchh
Confidence                              44555544322        224            8889999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 024531          204 IARELRLLAE  213 (266)
Q Consensus       204 ~~~~l~~l~~  213 (266)
                      ++..+..++.
T Consensus       259 a~~~l~~~y~  268 (906)
T PRK14720        259 AREELIRFYK  268 (906)
T ss_pred             hHHHHHHHHH
Confidence            9999999875

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.18  E-value=3.9e-05  Score=67.29  Aligned_cols=136  Identities=17%  Similarity=0.042  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhh-----hchhHHHHHHHh------------hhhhhhhHHH
Q 024531           80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQ-----LFGKYRDMALAV------------KNPCHLNMAA  142 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~-----~~~~~~~~~~~l------------~~~~~~n~a~  142 (266)
                      ...++.+.+.+++|-...+..+|++.|.++..+.|+++..-     ....+-+..+.+            .+...-.+|.
T Consensus       555 ~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~a  634 (840)
T KOG2003|consen  555 LNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAA  634 (840)
T ss_pred             HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHH
Confidence            45677788889999999999999999999999999876541     000000111111            1234557888


Q ss_pred             HHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 024531          143 CLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE  215 (266)
Q Consensus       143 ~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  215 (266)
                      .|+...-|++|+.++++|--+.|+-.+.....+.|+...|+|.+|...|+..-+--|.|.++++.|.++..-+
T Consensus       635 yyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dl  707 (840)
T KOG2003|consen  635 YYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDL  707 (840)
T ss_pred             HHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccc
Confidence            8999999999999999999999999999999999999999999999999999999999999999988875443

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.18  E-value=0.00019  Score=58.62  Aligned_cols=126  Identities=14%  Similarity=-0.035  Sum_probs=108.6

Q ss_pred             HHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCc
Q 024531           88 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN  167 (266)
Q Consensus        88 ~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~  167 (266)
                      +........|+.+.|...+++.....|.+..                 +...-|.-+-..|.|++|+++|+..|.-||.|
T Consensus        57 qV~IAAld~~~~~lAq~C~~~L~~~fp~S~R-----------------V~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~  119 (289)
T KOG3060|consen   57 QVFIAALDTGRDDLAQKCINQLRDRFPGSKR-----------------VGKLKAMLLEATGNYKEAIEYYESLLEDDPTD  119 (289)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHhCCCChh-----------------HHHHHHHHHHHhhchhhHHHHHHHHhccCcch
Confidence            3445566778889999999998888888654                 35566888888999999999999999999999


Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 024531          168 VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIF  230 (266)
Q Consensus       168 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~  230 (266)
                      .-.+-+.--+.-.+|.--+|++.+...+..-++|.+++..+..++-..+..+++.-.+-.-++
T Consensus       120 ~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll  182 (289)
T KOG3060|consen  120 TVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL  182 (289)
T ss_pred             hHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence            999999888899999999999999999999999999999999999999999888777544444

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=98.16  E-value=1.8e-05  Score=49.00  Aligned_cols=47  Identities=15%  Similarity=0.218  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 024531          169 KALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE  215 (266)
Q Consensus       169 ~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  215 (266)
                      +.+|.+|.+++++|+|++|..+.+.+|+++|+|..+......+....
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i   48 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKI   48 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Confidence            46889999999999999999999999999999999988777665443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.15  E-value=2.2e-05  Score=64.76  Aligned_cols=102  Identities=17%  Similarity=0.117  Sum_probs=83.5

Q ss_pred             hhhHHHHHHHhhCHHHHHHHHHhHhcCCCCc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHH
Q 024531          137 HLNMAACLLKLKRYEEAIGQCSLVLGEDENN---VKALFRRGKARAELGQTDAAREDFLKAGKFAPED---KSIARELRL  210 (266)
Q Consensus       137 ~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~l~~  210 (266)
                      .++.|.-+++.|+|..|..-|..-+...|++   +.|+|++|.+++.+|+|++|...|..+.+-.|.+   ++++..|+.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            7899999999999999999999999999986   5799999999999999999999999999999876   466666666


Q ss_pred             HHHHHHHHHHHHHHHHhcccCCCCCCccc
Q 024531          211 LAEHEKAVYKKQKEIYKGIFGPRPEPKQK  239 (266)
Q Consensus       211 l~~~~~~~~~~~~~~~~k~~~~~~~~~~~  239 (266)
                      +..++++. ++.+..|..+....|...+.
T Consensus       224 ~~~~l~~~-d~A~atl~qv~k~YP~t~aA  251 (262)
T COG1729         224 SLGRLGNT-DEACATLQQVIKRYPGTDAA  251 (262)
T ss_pred             HHHHhcCH-HHHHHHHHHHHHHCCCCHHH
Confidence            65555554 44555677776665655443

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.12  E-value=5.3e-05  Score=64.39  Aligned_cols=139  Identities=18%  Similarity=0.051  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531           80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  159 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~  159 (266)
                      ...++.+..-|+.+-..++|.+|...|.++..+.-....           ..-...+|.+.+.+|.+. ++.+|+.++++
T Consensus        32 e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~-----------~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~   99 (282)
T PF14938_consen   32 EEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGD-----------KFEAAKAYEEAANCYKKG-DPDEAIECYEK   99 (282)
T ss_dssp             HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT------------HHHHHHHHHHHHHHHHHT-THHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHHHhh-CHHHHHHHHHH
Confidence            455777777888888899999999999999887643211           111334678888888666 99999999999


Q ss_pred             HhcCC-----CC-chHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024531          160 VLGED-----EN-NVKALFRRGKARAEL-GQTDAAREDFLKAGKFAPE--D----KSIARELRLLAEHEKAVYKKQKEIY  226 (266)
Q Consensus       160 al~l~-----p~-~~~a~~~~g~~~~~~-g~~~~A~~~~~~al~l~p~--~----~~~~~~l~~l~~~~~~~~~~~~~~~  226 (266)
                      |+.+.     |. -.+++.++|.+|... |++++|++.|++|+.+-..  .    ..+...++.+....+++.++-.. |
T Consensus       100 A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~-~  178 (282)
T PF14938_consen  100 AIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEI-Y  178 (282)
T ss_dssp             HHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHH-H
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHH-H
Confidence            99762     11 146788999999999 9999999999999997332  2    34555666666667777655444 6


Q ss_pred             hcccC
Q 024531          227 KGIFG  231 (266)
Q Consensus       227 ~k~~~  231 (266)
                      .++..
T Consensus       179 e~~~~  183 (282)
T PF14938_consen  179 EEVAK  183 (282)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66543

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.11  E-value=0.00017  Score=59.86  Aligned_cols=118  Identities=12%  Similarity=-0.014  Sum_probs=93.5

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhC-------------
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR-------------  149 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~-------------  149 (266)
                      .......|..+++.++|..|+..|++.+...|+.+..              ..+++.+|.++..++.             
T Consensus        69 ~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~--------------~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~  134 (243)
T PRK10866         69 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI--------------DYVLYMRGLTNMALDDSALQGFFGVDRSD  134 (243)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch--------------HHHHHHHHHhhhhcchhhhhhccCCCccc
Confidence            3446788999999999999999999999999987652              2368888888755541             


Q ss_pred             -----HHHHHHHHHhHhcCCCCchH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 024531          150 -----YEEAIGQCSLVLGEDENNVK-----------------ALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARE  207 (266)
Q Consensus       150 -----~~~A~~~~~~al~l~p~~~~-----------------a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~  207 (266)
                           ..+|+..+++.+...|++.-                 --+..|.-|.+.|.|..|+.-++.+++--|+.+.....
T Consensus       135 rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~ea  214 (243)
T PRK10866        135 RDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDA  214 (243)
T ss_pred             cCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHH
Confidence                 35788999999999998631                 23456888999999999999999999999987766666


Q ss_pred             HHHHHHH
Q 024531          208 LRLLAEH  214 (266)
Q Consensus       208 l~~l~~~  214 (266)
                      |..+...
T Consensus       215 l~~l~~a  221 (243)
T PRK10866        215 LPLMENA  221 (243)
T ss_pred             HHHHHHH
Confidence            6655433

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.11  E-value=3.3e-06  Score=47.33  Aligned_cols=32  Identities=28%  Similarity=0.393  Sum_probs=29.6

Q ss_pred             hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCc
Q 024531          136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENN  167 (266)
Q Consensus       136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~  167 (266)
                      +++++|.+|..+|++++|+.+|+++|+++|++
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            68999999999999999999999999999975

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.10  E-value=5.3e-06  Score=49.54  Aligned_cols=41  Identities=20%  Similarity=0.143  Sum_probs=39.0

Q ss_pred             hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHH
Q 024531          136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGK  176 (266)
Q Consensus       136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~  176 (266)
                      ++..+|.+|..+|++++|+..|+++++.+|+++.++..+|.
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            57899999999999999999999999999999999999885

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.10  E-value=8e-05  Score=68.16  Aligned_cols=144  Identities=13%  Similarity=0.077  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhh------------chh-HH--------------------
Q 024531           80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQL------------FGK-YR--------------------  126 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~------------~~~-~~--------------------  126 (266)
                      +.....+..+|..+++.|++++|...|...|+.+|++..+-.            ..+ ..                    
T Consensus        35 ~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~  114 (517)
T PF12569_consen   35 LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPR  114 (517)
T ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchh
Confidence            455667778899999999999999999999999987643300            000 00                    


Q ss_pred             ---------H-----------------------HHHHh-----hhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCc--
Q 024531          127 ---------D-----------------------MALAV-----KNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN--  167 (266)
Q Consensus       127 ---------~-----------------------~~~~l-----~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~--  167 (266)
                               +                       .++.+     ...+...+..-|...-.......... .-...|..  
T Consensus       115 rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~-~~~~~~p~~~  193 (517)
T PF12569_consen  115 RLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGD-DEEKEPPSTL  193 (517)
T ss_pred             HhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCcc-ccccCCchHH
Confidence                     0                       00111     12355566666655443333332222 22233333  


Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 024531          168 VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKE  224 (266)
Q Consensus       168 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~  224 (266)
                      .+++|.+|+.|-.+|++++|+.++++|++..|..++....-+++.+..+...++...
T Consensus       194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~  250 (517)
T PF12569_consen  194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEA  250 (517)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence            478899999999999999999999999999999999999999998888877776664

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.07  E-value=5e-05  Score=69.11  Aligned_cols=122  Identities=15%  Similarity=0.092  Sum_probs=84.3

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531           82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  161 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al  161 (266)
                      ..+.+--.|..+...|+-++|...-..++..++.+..                 |+.-+|..+..-++|++|+++|+.|+
T Consensus        40 HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~v-----------------CwHv~gl~~R~dK~Y~eaiKcy~nAl  102 (700)
T KOG1156|consen   40 HGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHV-----------------CWHVLGLLQRSDKKYDEAIKCYRNAL  102 (700)
T ss_pred             cchhHHhccchhhcccchHHHHHHHHHHhccCcccch-----------------hHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            3444555677777777777777777777776666443                 56677777777777777777777777


Q ss_pred             cCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 024531          162 GEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYK  220 (266)
Q Consensus       162 ~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~  220 (266)
                      .++|+|...+..++....++++|+.....-.+.+++.|++-..+-.++......+++..
T Consensus       103 ~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~  161 (700)
T KOG1156|consen  103 KIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKM  161 (700)
T ss_pred             hcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            77777777777777777777777777777777777777766666555555444444433

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.04  E-value=8.8e-05  Score=70.56  Aligned_cols=140  Identities=14%  Similarity=0.087  Sum_probs=106.7

Q ss_pred             HHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhh-----h--chhHHHHHHH------------hhhhhhhhHHHHHH
Q 024531           85 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQ-----L--FGKYRDMALA------------VKNPCHLNMAACLL  145 (266)
Q Consensus        85 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~-----~--~~~~~~~~~~------------l~~~~~~n~a~~~~  145 (266)
                      .+--+|..|...-+...|...|.+|.++++.+....     .  ..+..++...            ........+|..|.
T Consensus       494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyL  573 (1238)
T KOG1127|consen  494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYL  573 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccccc
Confidence            334456666666677888889999998888654320     0  1112222111            11123345899999


Q ss_pred             HhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 024531          146 KLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKE  224 (266)
Q Consensus       146 ~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~  224 (266)
                      ..+++.+|+..++.|++.+|.+..+|.-+|.+|...|.|.-|++.|.+|..++|.+.-.+...+.+....+++++.-..
T Consensus       574 ea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~  652 (1238)
T KOG1127|consen  574 EAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDA  652 (1238)
T ss_pred             CccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999988887777777777777665544

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=98.03  E-value=6.2e-06  Score=71.39  Aligned_cols=110  Identities=16%  Similarity=0.191  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531           80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  159 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~  159 (266)
                      ..+...+-.+||.||-.|+|+.|+..-+.-|.+.....+           ..-...++.|+|.||.-+|+++.|+++|+.
T Consensus       192 ~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGD-----------rAaeRRA~sNlgN~hiflg~fe~A~ehYK~  260 (639)
T KOG1130|consen  192 LAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGD-----------RAAERRAHSNLGNCHIFLGNFELAIEHYKL  260 (639)
T ss_pred             HhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhh-----------HHHHHHhhcccchhhhhhcccHhHHHHHHH
Confidence            334444556689999999999999998888877654322           222455899999999999999999999998


Q ss_pred             HhcCC----CC--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 024531          160 VLGED----EN--NVKALFRRGKARAELGQTDAAREDFLKAGKFAPE  200 (266)
Q Consensus       160 al~l~----p~--~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~  200 (266)
                      ++.+.    ..  ....-|.+|.+|.-+.++++|+.++++-|.+..+
T Consensus       261 tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqe  307 (639)
T KOG1130|consen  261 TLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQE  307 (639)
T ss_pred             HHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            76442    22  3456789999999999999999999998887644

>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=98.03  E-value=1.2e-05  Score=67.32  Aligned_cols=57  Identities=28%  Similarity=0.510  Sum_probs=51.8

Q ss_pred             ccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeecccccc
Q 024531            8 KEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKE   67 (266)
Q Consensus         8 ~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~~~~~~   67 (266)
                      ++|+||+.+|..|+.|+...|.|++.++||..|.   +.+||++.++|+|+|.++.....
T Consensus       197 ~vipG~~EaL~~Mk~Gek~~l~IP~~laYG~~g~---~gIppns~LvfeVeLl~V~~~~~  253 (269)
T PRK10902        197 GVIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGV---PGIPANSTLVFDVELLDVKPAPK  253 (269)
T ss_pred             CcchHHHHHHhcCCCCcEEEEEECchhhCCCCCC---CCCCCCCcEEEEEEEEEeccCcc
Confidence            5899999999999999999999999999999886   47999999999999999866543

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.03  E-value=3.8e-05  Score=65.49  Aligned_cols=101  Identities=21%  Similarity=0.250  Sum_probs=79.9

Q ss_pred             HHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHH
Q 024531           91 NALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKA  170 (266)
Q Consensus        91 ~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a  170 (266)
                      ..+..+.||..|+..+.-.+.......+                .+-..+|.|++.+|+|++|+..|..+...+..+.+.
T Consensus        30 edfls~rDytGAislLefk~~~~~EEE~----------------~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el   93 (557)
T KOG3785|consen   30 EDFLSNRDYTGAISLLEFKLNLDREEED----------------SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAEL   93 (557)
T ss_pred             HHHHhcccchhHHHHHHHhhccchhhhH----------------HHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCccc
Confidence            3456778999999998877755443221                146689999999999999999999999888778899


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024531          171 LFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL  211 (266)
Q Consensus       171 ~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l  211 (266)
                      ..++|.|++.+|.|.+|.....+|    |.++-....|-.+
T Consensus        94 ~vnLAcc~FyLg~Y~eA~~~~~ka----~k~pL~~RLlfhl  130 (557)
T KOG3785|consen   94 GVNLACCKFYLGQYIEAKSIAEKA----PKTPLCIRLLFHL  130 (557)
T ss_pred             chhHHHHHHHHHHHHHHHHHHhhC----CCChHHHHHHHHH
Confidence            999999999999999998876655    6666555555444

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.02  E-value=7.9e-05  Score=63.47  Aligned_cols=92  Identities=23%  Similarity=0.255  Sum_probs=75.8

Q ss_pred             cHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHH
Q 024531           98 KLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKA  177 (266)
Q Consensus        98 ~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~  177 (266)
                      .+.+|.-.|++..+..+..+.                 +++.+|.|++.+|+|++|...+.+++..+|+++.++.++..+
T Consensus       182 ~~~~A~y~f~El~~~~~~t~~-----------------~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~  244 (290)
T PF04733_consen  182 KYQDAFYIFEELSDKFGSTPK-----------------LLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVC  244 (290)
T ss_dssp             CCCHHHHHHHHHHCCS--SHH-----------------HHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccCCCHH-----------------HHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence            588999999997666555433                 578899999999999999999999999999999999999999


Q ss_pred             HHHcCCH-HHHHHHHHHHHhhCCCCHHHHH
Q 024531          178 RAELGQT-DAAREDFLKAGKFAPEDKSIAR  206 (266)
Q Consensus       178 ~~~~g~~-~~A~~~~~~al~l~p~~~~~~~  206 (266)
                      ...+|+. +.+.+.+.+....+|+++-+..
T Consensus       245 ~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~  274 (290)
T PF04733_consen  245 SLHLGKPTEAAERYLSQLKQSNPNHPLVKD  274 (290)
T ss_dssp             HHHTT-TCHHHHHHHHHCHHHTTTSHHHHH
T ss_pred             HHHhCCChhHHHHHHHHHHHhCCCChHHHH
Confidence            9999999 6677888888889999886543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.01  E-value=0.00029  Score=64.53  Aligned_cols=151  Identities=17%  Similarity=0.157  Sum_probs=111.3

Q ss_pred             hHHHHhhccHHHHHHHHHHHHhhhccchhh-------hhchhHHHHHHHhhhh---------hhhhHHHHHHHhhCHHHH
Q 024531           90 GNALFKEEKLEEAMQQYEMAIAYMGDDFMF-------QLFGKYRDMALAVKNP---------CHLNMAACLLKLKRYEEA  153 (266)
Q Consensus        90 g~~~~~~g~~~~A~~~y~~al~~~~~~~~~-------~~~~~~~~~~~~l~~~---------~~~n~a~~~~~~~~~~~A  153 (266)
                      +...+..|+...|......+++..|++...       +....+-+....+...         ++..-+....-++..++|
T Consensus       591 ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA  670 (913)
T KOG0495|consen  591 AKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEA  670 (913)
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHH
Confidence            566778899999999999999999986433       1111122223333322         445555556668899999


Q ss_pred             HHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 024531          154 IGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPR  233 (266)
Q Consensus       154 ~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~  233 (266)
                      +..|+.+|+..|+..+.|..+|+++.++++.+.|.+.|...+..-|+....+-.|..+.++..... +.+..+.+..  .
T Consensus       671 ~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~-rAR~ildrar--l  747 (913)
T KOG0495|consen  671 LRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLV-RARSILDRAR--L  747 (913)
T ss_pred             HHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchh-hHHHHHHHHH--h
Confidence            999999999999999999999999999999999999999999999999999999998877765443 3333344422  2


Q ss_pred             CCCcccchhH
Q 024531          234 PEPKQKKNWL  243 (266)
Q Consensus       234 ~~~~~~~~~~  243 (266)
                      +.|+....|+
T Consensus       748 kNPk~~~lwl  757 (913)
T KOG0495|consen  748 KNPKNALLWL  757 (913)
T ss_pred             cCCCcchhHH
Confidence            3444344554

>PRK10941 hypothetical protein; Provisional

Probab=97.97  E-value=9.9e-05  Score=61.90  Aligned_cols=77  Identities=22%  Similarity=0.145  Sum_probs=70.8

Q ss_pred             HhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 024531          131 AVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARE  207 (266)
Q Consensus       131 ~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~  207 (266)
                      .+....+.|+=.+|++.++++.|+.+.+..+.++|+++.-+..+|.+|.++|.+..|..+++..++..|+++.+...
T Consensus       178 ~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i  254 (269)
T PRK10941        178 EVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI  254 (269)
T ss_pred             HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence            34555688999999999999999999999999999999999999999999999999999999999999999877643

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.97  E-value=1.5e-05  Score=44.53  Aligned_cols=33  Identities=33%  Similarity=0.504  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 024531          169 KALFRRGKARAELGQTDAAREDFLKAGKFAPED  201 (266)
Q Consensus       169 ~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~  201 (266)
                      ++++.+|.+|..+|++++|..+|+++++++|+|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            578889999999999999999999999988854

...

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=97.95  E-value=8e-05  Score=64.75  Aligned_cols=116  Identities=11%  Similarity=0.169  Sum_probs=92.9

Q ss_pred             HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhh-chhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531           81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQL-FGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  159 (266)
Q Consensus        81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~-~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~  159 (266)
                      +........|...|++++|..|+..|..+|+++........ .....+....+..-+-..+..||+++++.+.|+.+..+
T Consensus       174 kwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hr  253 (569)
T PF15015_consen  174 KWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHR  253 (569)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhh
Confidence            34555567788999999999999999999999976443322 22222333344444567899999999999999999999


Q ss_pred             HhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024531          160 VLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGK  196 (266)
Q Consensus       160 al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~  196 (266)
                      .|-++|.+...|.+.|.|+..+.+|.+|.+.+.-+.-
T Consensus       254 sI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~y  290 (569)
T PF15015_consen  254 SINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADY  290 (569)
T ss_pred             hhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999988766544

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.95  E-value=4e-05  Score=72.80  Aligned_cols=113  Identities=12%  Similarity=0.061  Sum_probs=100.1

Q ss_pred             HHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcC
Q 024531           84 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE  163 (266)
Q Consensus        84 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l  163 (266)
                      ..+..+|..+...+++..|+..|+.+++.+|.+..                 +...+|.+|...|++.-|++.+++|..+
T Consensus       563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n-----------------~W~gLGeAY~~sGry~~AlKvF~kAs~L  625 (1238)
T KOG1127|consen  563 ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYN-----------------LWLGLGEAYPESGRYSHALKVFTKASLL  625 (1238)
T ss_pred             hhhhhccccccCccchhhHHHHHHHHhcCCchhHH-----------------HHHHHHHHHHhcCceehHHHhhhhhHhc
Confidence            34455899999999999999999999999999766                 6899999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024531          164 DENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAE  213 (266)
Q Consensus       164 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  213 (266)
                      +|.+.-+.|..+.....+|+|.+|+..+..++.-......++..+..+.-
T Consensus       626 rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~i  675 (1238)
T KOG1127|consen  626 RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVI  675 (1238)
T ss_pred             CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            99999999999999999999999999999999876665656655655543

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.92  E-value=0.0018  Score=46.77  Aligned_cols=106  Identities=23%  Similarity=0.320  Sum_probs=76.9

Q ss_pred             HHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc----
Q 024531           87 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG----  162 (266)
Q Consensus        87 ~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~----  162 (266)
                      ...|...+..|-|.+|...|.+|.+.....+.-+.++.     ..+-.-||..++-++..+|+|++++.....+|.    
T Consensus        13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh-----~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR   87 (144)
T PF12968_consen   13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDH-----DGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR   87 (144)
T ss_dssp             HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---H-----HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhccc-----ccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Confidence            45667778889999999999999987544322111110     223344888999999999999999888888874    


Q ss_pred             ---CCCC----chHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024531          163 ---EDEN----NVKALFRRGKARAELGQTDAAREDFLKAGKF  197 (266)
Q Consensus       163 ---l~p~----~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  197 (266)
                         ++.+    .+.+.|++|.++..+|..++|+..|+.+-+.
T Consensus        88 RGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   88 RGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             H--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             ccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence               4443    3568899999999999999999999988653

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.91  E-value=0.00033  Score=57.64  Aligned_cols=130  Identities=18%  Similarity=0.097  Sum_probs=99.0

Q ss_pred             HHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhh-------------------hhchhHHH---HHH--HhhhhhhhhH
Q 024531           85 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMF-------------------QLFGKYRD---MAL--AVKNPCHLNM  140 (266)
Q Consensus        85 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~-------------------~~~~~~~~---~~~--~l~~~~~~n~  140 (266)
                      ..+...+.+...++|.-++..|.+.++.+|.....                   ...+..+.   .+.  .....++.|.
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence            44567788888899999999999999987542111                   00111111   111  1224467888


Q ss_pred             HHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHH
Q 024531          141 AACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE---DKSIARELRLLAEH  214 (266)
Q Consensus       141 a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~---~~~~~~~l~~l~~~  214 (266)
                      +.+|...+++..|...+.+.+..||.++.+..+.|.|++.+|+..+|++.++.++...|.   +..+..+|..+++.
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmyEL  335 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMYEL  335 (366)
T ss_pred             hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999997   44555556655443

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.90  E-value=2.5e-05  Score=63.02  Aligned_cols=87  Identities=17%  Similarity=0.085  Sum_probs=74.7

Q ss_pred             hhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 024531          138 LNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKA  217 (266)
Q Consensus       138 ~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~  217 (266)
                      ..-|.+++.-..|..|+..|.+||.++|..+..+.+++.||+++.+|+.+..+..++++++|+.......++......+.
T Consensus        14 kE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~   93 (284)
T KOG4642|consen   14 KEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKG   93 (284)
T ss_pred             HhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcc
Confidence            34567777888999999999999999999999999999999999999999999999999999999888888887555555


Q ss_pred             HHHHHHH
Q 024531          218 VYKKQKE  224 (266)
Q Consensus       218 ~~~~~~~  224 (266)
                      +...-+.
T Consensus        94 ~~eaI~~  100 (284)
T KOG4642|consen   94 YDEAIKV  100 (284)
T ss_pred             ccHHHHH
Confidence            5444433

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.89  E-value=6.4e-05  Score=56.38  Aligned_cols=70  Identities=19%  Similarity=0.108  Sum_probs=64.3

Q ss_pred             hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 024531          136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENN---VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIA  205 (266)
Q Consensus       136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~  205 (266)
                      .+++.|...++.|+|.+|+..++.+..-.|..   ..+.+.+|.+|+..++|++|+..+++-++++|.++.+-
T Consensus        12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd   84 (142)
T PF13512_consen   12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD   84 (142)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc
Confidence            48899999999999999999999999888865   57899999999999999999999999999999987554

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.86  E-value=0.00021  Score=52.59  Aligned_cols=93  Identities=16%  Similarity=0.078  Sum_probs=70.8

Q ss_pred             hhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH--HHHH--HHHHHH
Q 024531          137 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK--SIAR--ELRLLA  212 (266)
Q Consensus       137 ~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~--~~~~--~l~~l~  212 (266)
                      +-..|.+....|+.+.|++-|.++|.+.|.++.+|.++++++.-+|+.++|+.++++++++..+..  ....  .-+.++
T Consensus        46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly  125 (175)
T KOG4555|consen   46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY  125 (175)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence            445678888899999999999999999999999999999999999999999999999999976532  2222  222333


Q ss_pred             HHHHHHHHHHHHHHhccc
Q 024531          213 EHEKAVYKKQKEIYKGIF  230 (266)
Q Consensus       213 ~~~~~~~~~~~~~~~k~~  230 (266)
                      . +....++.+.+|...-
T Consensus       126 R-l~g~dd~AR~DFe~AA  142 (175)
T KOG4555|consen  126 R-LLGNDDAARADFEAAA  142 (175)
T ss_pred             H-HhCchHHHHHhHHHHH
Confidence            3 3333445555565543

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.83  E-value=2.4e-05  Score=43.55  Aligned_cols=32  Identities=31%  Similarity=0.367  Sum_probs=29.4

Q ss_pred             hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCc
Q 024531          136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENN  167 (266)
Q Consensus       136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~  167 (266)
                      ++..+|.+++.+|++++|+.+|++++.++|++
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            58899999999999999999999999999975

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.83  E-value=0.00068  Score=56.70  Aligned_cols=112  Identities=21%  Similarity=0.232  Sum_probs=82.5

Q ss_pred             HHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh----
Q 024531           84 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL----  159 (266)
Q Consensus        84 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~----  159 (266)
                      +.....+..+...|++.+|...|..++...|....                 +...++.||...|+.+.|...+..    
T Consensus       135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~-----------------~~~~la~~~l~~g~~e~A~~iL~~lP~~  197 (304)
T COG3118         135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSE-----------------AKLLLAECLLAAGDVEAAQAILAALPLQ  197 (304)
T ss_pred             HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccch-----------------HHHHHHHHHHHcCChHHHHHHHHhCccc
Confidence            33456788899999999999999999999998654                 577788888888888766665532    


Q ss_pred             ------------------------------HhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHH
Q 024531          160 ------------------------------VLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE--DKSIARE  207 (266)
Q Consensus       160 ------------------------------al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~~  207 (266)
                                                    .+..||++..+-+.+|..+...|++++|.+.+-..+..+-+  +..+++.
T Consensus       198 ~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~  277 (304)
T COG3118         198 AQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKT  277 (304)
T ss_pred             chhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHH
Confidence                                          22446777778888888888888888888777777766543  4555555


Q ss_pred             HHHHH
Q 024531          208 LRLLA  212 (266)
Q Consensus       208 l~~l~  212 (266)
                      |-.+-
T Consensus       278 lle~f  282 (304)
T COG3118         278 LLELF  282 (304)
T ss_pred             HHHHH
Confidence            55443

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.81  E-value=0.00011  Score=68.38  Aligned_cols=125  Identities=29%  Similarity=0.419  Sum_probs=107.1

Q ss_pred             CHHHHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhh--CHHH
Q 024531           75 TVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK--RYEE  152 (266)
Q Consensus        75 ~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~--~~~~  152 (266)
                      ..+.-+..+......|+.+|+.++|..|.-.|..++.+.|.+...             ...+..|.+.|++.+|  +|..
T Consensus        45 di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~-------------~a~~~~~~~s~~m~~~l~~~~~  111 (748)
T KOG4151|consen   45 DIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHV-------------VATLRSNQASCYMQLGLGEYPK  111 (748)
T ss_pred             chHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchh-------------hhhHHHHHHHHHhhcCccchhh
Confidence            445556778888999999999999999999999999999965332             3446788888888765  8999


Q ss_pred             HHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024531          153 AIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLA  212 (266)
Q Consensus       153 A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  212 (266)
                      ++..|.-++...|...++++.++.+|..++..+-|++++.-....+|.+.++..-+.+++
T Consensus       112 ~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk  171 (748)
T KOG4151|consen  112 AIPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELK  171 (748)
T ss_pred             hcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999987765555443

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.77  E-value=7.4e-05  Score=59.66  Aligned_cols=73  Identities=16%  Similarity=0.043  Sum_probs=67.8

Q ss_pred             hhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 024531          133 KNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIA  205 (266)
Q Consensus       133 ~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~  205 (266)
                      +..+++.+|..|-.+|-+.-|..++.++|.+.|.-+.++..+|.-+..-|+|+.|.+.|..++++||.+.=+.
T Consensus        64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~  136 (297)
T COG4785          64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAH  136 (297)
T ss_pred             HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHH
Confidence            4557899999999999999999999999999999999999999999999999999999999999999875443

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.76  E-value=0.0011  Score=61.02  Aligned_cols=123  Identities=16%  Similarity=0.034  Sum_probs=104.5

Q ss_pred             hHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchH
Q 024531           90 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVK  169 (266)
Q Consensus        90 g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~  169 (266)
                      ++.....++.++|++.+.+||...|....                 ++..+|+++-.+++.+.|...|...++..|+.+-
T Consensus       658 ~~~er~ld~~eeA~rllEe~lk~fp~f~K-----------------l~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ip  720 (913)
T KOG0495|consen  658 ANLERYLDNVEEALRLLEEALKSFPDFHK-----------------LWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIP  720 (913)
T ss_pred             hHHHHHhhhHHHHHHHHHHHHHhCCchHH-----------------HHHHHhHHHHHHHHHHHHHHHHHhccccCCCCch
Confidence            34444567788999999999999888544                 6999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 024531          170 ALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGI  229 (266)
Q Consensus       170 a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~  229 (266)
                      .|..++..-...|+.-.|...+.++..-+|.|...+-..-+...+.+..++++..|-+.+
T Consensus       721 LWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakAL  780 (913)
T KOG0495|consen  721 LWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKAL  780 (913)
T ss_pred             HHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999887666666666666666666665443

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.74  E-value=7.2e-05  Score=67.51  Aligned_cols=108  Identities=17%  Similarity=0.067  Sum_probs=95.6

Q ss_pred             hHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchH
Q 024531           90 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVK  169 (266)
Q Consensus        90 g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~  169 (266)
                      |.-+-..|+-..|+..+..|+...|.....                .+.|+|...++.+..-+|-..+.++|.+....+-
T Consensus       614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v----------------~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl  677 (886)
T KOG4507|consen  614 GLYWRAVGNSTFAIACLQRALNLAPLQQDV----------------PLVNLANLLIHYGLHLDATKLLLQALAINSSEPL  677 (886)
T ss_pred             cceeeecCCcHHHHHHHHHHhccChhhhcc----------------cHHHHHHHHHHhhhhccHHHHHHHHHhhcccCch
Confidence            444556789999999999999998875432                4789999999999999999999999999988888


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024531          170 ALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAE  213 (266)
Q Consensus       170 a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  213 (266)
                      .+|-+|.++..+.+.+.|++.|+.|+.++|+++.+...|..+.-
T Consensus       678 ~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c  721 (886)
T KOG4507|consen  678 TFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC  721 (886)
T ss_pred             HHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence            99999999999999999999999999999999999988887643

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.72  E-value=0.00059  Score=58.41  Aligned_cols=30  Identities=17%  Similarity=0.184  Sum_probs=24.8

Q ss_pred             HHHHHHhHHHHhhccHHHHHHHHHHHHhhh
Q 024531           84 DRRKMDGNALFKEEKLEEAMQQYEMAIAYM  113 (266)
Q Consensus        84 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~  113 (266)
                      ......|-++|+.|+|++|+..|.-+..-+
T Consensus        58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~   87 (557)
T KOG3785|consen   58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKD   87 (557)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHhccC
Confidence            334467899999999999999999988744

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.61  E-value=0.0015  Score=53.85  Aligned_cols=141  Identities=13%  Similarity=0.124  Sum_probs=98.0

Q ss_pred             HHhHHHHhhccHHHHHHHHHHHHhhhccchhh---------hh-chhHHHHHHHhhhh-hhhhHHHHHHHh----hCHHH
Q 024531           88 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMF---------QL-FGKYRDMALAVKNP-CHLNMAACLLKL----KRYEE  152 (266)
Q Consensus        88 ~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~---------~~-~~~~~~~~~~l~~~-~~~n~a~~~~~~----~~~~~  152 (266)
                      --|..+.+.++|++|++.......+.-.....         .. .+....+ ..+.-. .+..+|.++.+.    +...+
T Consensus       113 ~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~m-q~ided~tLtQLA~awv~la~ggek~qd  191 (299)
T KOG3081|consen  113 LAAIIYMHDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKM-QQIDEDATLTQLAQAWVKLATGGEKIQD  191 (299)
T ss_pred             HhhHHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccchHHHHHHHHHHHHHHhccchhhhh
Confidence            34678889999999999877743332110000         00 1111111 111111 244477777663    35889


Q ss_pred             HHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 024531          153 AIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGI  229 (266)
Q Consensus       153 A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~  229 (266)
                      |.-+|+..-+..|..+..+...+.|++.+|+|++|...++.+|.-++++++.+.++..+...++...+...+.....
T Consensus       192 AfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QL  268 (299)
T KOG3081|consen  192 AFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQL  268 (299)
T ss_pred             HHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence            99999999887788899999999999999999999999999999999999999999988777766544444433333

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.58  E-value=0.0032  Score=49.63  Aligned_cols=103  Identities=20%  Similarity=0.168  Sum_probs=80.3

Q ss_pred             HHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCC
Q 024531           85 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED  164 (266)
Q Consensus        85 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~  164 (266)
                      ...+.+..++..|++++|+..++.++....+.              .+..-+-..+|.+...+|.++.|+..++..-.-+
T Consensus        91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De--------------~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~  156 (207)
T COG2976          91 AALELAKAEVEANNLDKAEAQLKQALAQTKDE--------------NLKALAALRLARVQLQQKKADAALKTLDTIKEES  156 (207)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHccchhH--------------HHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc
Confidence            44567888999999999999999999765442              2233366789999999999999999887654321


Q ss_pred             CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 024531          165 ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK  202 (266)
Q Consensus       165 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~  202 (266)
                       -.+..--.+|.++...|+-++|...|.++++.++++.
T Consensus       157 -w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~  193 (207)
T COG2976         157 -WAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA  193 (207)
T ss_pred             -HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence             1223355789999999999999999999999985543

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.58  E-value=0.00032  Score=57.10  Aligned_cols=107  Identities=13%  Similarity=0.029  Sum_probs=84.0

Q ss_pred             hhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc--------CCCCc----------hHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024531          132 VKNPCHLNMAACLLKLKRYEEAIGQCSLVLG--------EDENN----------VKALFRRGKARAELGQTDAAREDFLK  193 (266)
Q Consensus       132 l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~--------l~p~~----------~~a~~~~g~~~~~~g~~~~A~~~~~~  193 (266)
                      ..++++...|.-+++.|+|.+|...|..|+.        -.|..          ...+.+.++|+...|+|-++++....
T Consensus       176 kav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~se  255 (329)
T KOG0545|consen  176 KAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSE  255 (329)
T ss_pred             hhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence            3456788899999999999999999998872        23433          34688999999999999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCccc
Q 024531          194 AGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQK  239 (266)
Q Consensus       194 al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~  239 (266)
                      +|..+|.|..+..--++.....- ..++.+.++.+.+...+...+.
T Consensus       256 iL~~~~~nvKA~frRakAhaa~W-n~~eA~~D~~~vL~ldpslasv  300 (329)
T KOG0545|consen  256 ILRHHPGNVKAYFRRAKAHAAVW-NEAEAKADLQKVLELDPSLASV  300 (329)
T ss_pred             HHhcCCchHHHHHHHHHHHHhhc-CHHHHHHHHHHHHhcChhhHHH
Confidence            99999999988766665543333 3455667789999877765544

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.57  E-value=0.005  Score=53.40  Aligned_cols=126  Identities=12%  Similarity=-0.020  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHH
Q 024531           78 ERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQC  157 (266)
Q Consensus        78 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~  157 (266)
                      .+...+......|..-+..|+|.+|.+...++-+..+...                 .+|.--|.+-..+|+++.|-.+.
T Consensus        79 rKrrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~-----------------l~~l~aA~AA~qrgd~~~an~yL  141 (400)
T COG3071          79 RKRRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPV-----------------LAYLLAAEAAQQRGDEDRANRYL  141 (400)
T ss_pred             HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchH-----------------HHHHHHHHHHHhcccHHHHHHHH
Confidence            4566677778889999999999999999998666554422                 25667788888999999999999


Q ss_pred             HhHhcCCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 024531          158 SLVLGEDEN-NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYK  220 (266)
Q Consensus       158 ~~al~l~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~  220 (266)
                      .++-++.++ ..-....++..+...|+++.|.....++++..|.++.+......++...+...+
T Consensus       142 ~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~  205 (400)
T COG3071         142 AEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQA  205 (400)
T ss_pred             HHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHH
Confidence            999998544 456677899999999999999999999999999999999888888766665443

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.56  E-value=0.00015  Score=39.90  Aligned_cols=33  Identities=33%  Similarity=0.420  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 024531          169 KALFRRGKARAELGQTDAAREDFLKAGKFAPED  201 (266)
Q Consensus       169 ~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~  201 (266)
                      .++|++|.++..+|++++|+..|++++...|++
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            367888888888888888888888888888864

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.56  E-value=0.0014  Score=60.05  Aligned_cols=106  Identities=14%  Similarity=0.088  Sum_probs=92.3

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531           82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  161 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al  161 (266)
                      .-..+++.|..+|+..+|..|++.|...+...|.+..           .....+...+++.||+++.+.+.|.+++..|-
T Consensus       353 iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~-----------~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE  421 (872)
T KOG4814|consen  353 IHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNY-----------SDRFAKIQRALQVCYLKLEQLDNAVEVYQEAE  421 (872)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhh-----------hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            3455678899999999999999999999999987643           22246678999999999999999999999999


Q ss_pred             cCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024531          162 GEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFA  198 (266)
Q Consensus       162 ~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~  198 (266)
                      +.||.++-..+....+...-+.-++|+.+........
T Consensus       422 ~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~  458 (872)
T KOG4814|consen  422 EVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSE  458 (872)
T ss_pred             hhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence            9999999888888889999999999999998877654

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=97.56  E-value=0.00087  Score=49.49  Aligned_cols=81  Identities=11%  Similarity=0.108  Sum_probs=65.9

Q ss_pred             hhhhhhhHHHHHHHhh---CHHHHHHHHHhHhc-CCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 024531          133 KNPCHLNMAACLLKLK---RYEEAIGQCSLVLG-EDEN-NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARE  207 (266)
Q Consensus       133 ~~~~~~n~a~~~~~~~---~~~~A~~~~~~al~-l~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~  207 (266)
                      .....+|+|.++.+..   +..+.+..+...++ -.|. .-...|.++..++++++|+.++.+.+..++.+|+|.++...
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L  110 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL  110 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence            3346789999998866   46778889999986 4443 35788999999999999999999999999999999999865


Q ss_pred             HHHHHH
Q 024531          208 LRLLAE  213 (266)
Q Consensus       208 l~~l~~  213 (266)
                      -..++.
T Consensus       111 k~~ied  116 (149)
T KOG3364|consen  111 KETIED  116 (149)
T ss_pred             HHHHHH
Confidence            554443

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.52  E-value=9.2e-05  Score=41.43  Aligned_cols=33  Identities=33%  Similarity=0.341  Sum_probs=30.0

Q ss_pred             HHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHH
Q 024531          105 QYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAI  154 (266)
Q Consensus       105 ~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~  154 (266)
                      .|++||+++|++..                 +++|+|.+|...|++++|+
T Consensus         1 ~y~kAie~~P~n~~-----------------a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIELNPNNAE-----------------AYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             ChHHHHHHCCCCHH-----------------HHHHHHHHHHHCcCHHhhc
Confidence            38899999999776                 6999999999999999986

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.50  E-value=0.0036  Score=59.34  Aligned_cols=120  Identities=18%  Similarity=0.223  Sum_probs=94.8

Q ss_pred             HHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHH
Q 024531           92 ALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKAL  171 (266)
Q Consensus        92 ~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~  171 (266)
                      .....++|..|+....+.++..|+...                 +...-|..+.++|+.++|...++..-...+++...+
T Consensus        18 d~ld~~qfkkal~~~~kllkk~Pn~~~-----------------a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tL   80 (932)
T KOG2053|consen   18 DLLDSSQFKKALAKLGKLLKKHPNALY-----------------AKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTL   80 (932)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHCCCcHH-----------------HHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHH
Confidence            345678999999999999999999544                 456678999999999999977766666777788888


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH---HHHHHhccc
Q 024531          172 FRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKK---QKEIYKGIF  230 (266)
Q Consensus       172 ~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~---~~~~~~k~~  230 (266)
                      -.+-.||..++.+++|..+|++++.-+|+ .+....+=.++-+.+.+.+.   .-++| |.|
T Consensus        81 q~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~Ly-K~~  140 (932)
T KOG2053|consen   81 QFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLY-KNF  140 (932)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhC
Confidence            89999999999999999999999999999 66665665555555544333   33555 444

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.48  E-value=0.0076  Score=49.60  Aligned_cols=150  Identities=13%  Similarity=0.053  Sum_probs=107.2

Q ss_pred             HHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhh--------CHHHHHHH
Q 024531           85 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK--------RYEEAIGQ  156 (266)
Q Consensus        85 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~--------~~~~A~~~  156 (266)
                      .+...+-.+++.++|+.|+....+-+.+.|..+....              +++-.|.+++..=        --..|+..
T Consensus        73 a~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY--------------~~YlkgLs~~~~i~~~~rDq~~~~~A~~~  138 (254)
T COG4105          73 AQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADY--------------AYYLKGLSYFFQIDDVTRDQSAARAAFAA  138 (254)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhH--------------HHHHHHHHHhccCCccccCHHHHHHHHHH
Confidence            4457788999999999999999999999998654211              6777777776633        25678899


Q ss_pred             HHhHhcCCCCchH---------------HH--HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH-H
Q 024531          157 CSLVLGEDENNVK---------------AL--FRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKA-V  218 (266)
Q Consensus       157 ~~~al~l~p~~~~---------------a~--~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~-~  218 (266)
                      ++..+.-.|++.-               +.  ...|.-|.+.|.|..|+.-++.+++.-|+...+...|..+.+.... .
T Consensus       139 f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lg  218 (254)
T COG4105         139 FKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALG  218 (254)
T ss_pred             HHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhC
Confidence            9999999998521               12  2358889999999999999999999998887777777766554221 2


Q ss_pred             HHHHHHHHhcccCCCCCCcccchhHHHhHHHHH
Q 024531          219 YKKQKEIYKGIFGPRPEPKQKKNWLIIFWQLLV  251 (266)
Q Consensus       219 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~  251 (266)
                      ...+.+...++++.   +.+...|....|..+.
T Consensus       219 l~~~a~~~~~vl~~---N~p~s~~~~~~~~~~~  248 (254)
T COG4105         219 LTDEAKKTAKVLGA---NYPDSQWYKDAYRLLQ  248 (254)
T ss_pred             ChHHHHHHHHHHHh---cCCCCcchhhhhhccc
Confidence            22333345566643   3334447777766543

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.48  E-value=0.0019  Score=58.60  Aligned_cols=123  Identities=20%  Similarity=0.220  Sum_probs=87.0

Q ss_pred             HHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCC
Q 024531           87 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDEN  166 (266)
Q Consensus        87 ~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~  166 (266)
                      .+.+-++|+.+..++|+..++ .  +++.+..                 +....|+.++++++|++|++.|+..++-+.+
T Consensus        83 fEKAYc~Yrlnk~Dealk~~~-~--~~~~~~~-----------------ll~L~AQvlYrl~~ydealdiY~~L~kn~~d  142 (652)
T KOG2376|consen   83 FEKAYCEYRLNKLDEALKTLK-G--LDRLDDK-----------------LLELRAQVLYRLERYDEALDIYQHLAKNNSD  142 (652)
T ss_pred             HHHHHHHHHcccHHHHHHHHh-c--ccccchH-----------------HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc
Confidence            588899999999999999998 2  2222211                 4667899999999999999999887644332


Q ss_pred             -------------------------------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHH---
Q 024531          167 -------------------------------NVKALFRRGKARAELGQTDAAREDFLKAGKF--------APEDKSI---  204 (266)
Q Consensus       167 -------------------------------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--------~p~~~~~---  204 (266)
                                                     +..-+|+.|.++...|+|.+|++.+++++.+        +.+..++   
T Consensus       143 d~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~e  222 (652)
T KOG2376|consen  143 DQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEE  222 (652)
T ss_pred             hHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHH
Confidence                                           3457999999999999999999999999443        2222333   


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHhccc
Q 024531          205 ----ARELRLLAEHEKAVYKKQKEIYKGIF  230 (266)
Q Consensus       205 ----~~~l~~l~~~~~~~~~~~~~~~~k~~  230 (266)
                          +-.|..+.+.+++..++ ...|..+.
T Consensus       223 l~~IrvQlayVlQ~~Gqt~ea-~~iy~~~i  251 (652)
T KOG2376|consen  223 LNPIRVQLAYVLQLQGQTAEA-SSIYVDII  251 (652)
T ss_pred             HHHHHHHHHHHHHHhcchHHH-HHHHHHHH
Confidence                34444555555554443 44455554

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=97.48  E-value=0.00064  Score=58.33  Aligned_cols=139  Identities=22%  Similarity=0.283  Sum_probs=101.4

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhh-----------hhchhHHHHH---------------HHhhhh
Q 024531           82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMF-----------QLFGKYRDMA---------------LAVKNP  135 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~-----------~~~~~~~~~~---------------~~l~~~  135 (266)
                      +...+.+.|..++...++.+|+..+.+.+....+...-           ...+...+++               ..+...
T Consensus         5 q~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~e   84 (518)
T KOG1941|consen    5 QTKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLE   84 (518)
T ss_pred             hhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667788999999999999999999988765432110           1122222221               234566


Q ss_pred             hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCch-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH------
Q 024531          136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNV-----KALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSI------  204 (266)
Q Consensus       136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~-----~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~------  204 (266)
                      ++.|++..+-++.++.+++.+++.-+.+....+     .++..+|.++..++.++++++.|++|+.+..++.+.      
T Consensus        85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv  164 (518)
T KOG1941|consen   85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV  164 (518)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence            899999999999999999999999988754433     577889999999999999999999999987765443      


Q ss_pred             HHHHHHHHHHHHHHHH
Q 024531          205 ARELRLLAEHEKAVYK  220 (266)
Q Consensus       205 ~~~l~~l~~~~~~~~~  220 (266)
                      -..|..+...++..++
T Consensus       165 cv~Lgslf~~l~D~~K  180 (518)
T KOG1941|consen  165 CVSLGSLFAQLKDYEK  180 (518)
T ss_pred             hhhHHHHHHHHHhhhH
Confidence            3344545545554443

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.47  E-value=0.00065  Score=52.82  Aligned_cols=89  Identities=19%  Similarity=0.194  Sum_probs=63.7

Q ss_pred             CHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH-
Q 024531          149 RYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQT----------DAAREDFLKAGKFAPEDKSIARELRLLAEHEKA-  217 (266)
Q Consensus       149 ~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~----------~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~-  217 (266)
                      -|+.|.+.+......+|.+..++++.|.++..+.++          ++|+.-|+.|+.++|+..++...++.....+.. 
T Consensus         6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l   85 (186)
T PF06552_consen    6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL   85 (186)
T ss_dssp             HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence            378899999999999999999999999999988555          778999999999999999888888877554433 


Q ss_pred             ---------HHHHHHHHHhcccCCCCCCc
Q 024531          218 ---------VYKKQKEIYKGIFGPRPEPK  237 (266)
Q Consensus       218 ---------~~~~~~~~~~k~~~~~~~~~  237 (266)
                               .-++....|.+.....|.+.
T Consensus        86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~ne  114 (186)
T PF06552_consen   86 TPDTAEAEEYFEKATEYFQKAVDEDPNNE  114 (186)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHH-TT-H
T ss_pred             cCChHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence                     22333445566555555543

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.47  E-value=0.011  Score=47.96  Aligned_cols=108  Identities=19%  Similarity=0.251  Sum_probs=78.2

Q ss_pred             HHHHhHHHHhh-ccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCC
Q 024531           86 RKMDGNALFKE-EKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED  164 (266)
Q Consensus        86 ~~~~g~~~~~~-g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~  164 (266)
                      +.+.|..|-.. .++..|+.+|.++-+....+..           ......++...|..-..+++|.+|+..|.++....
T Consensus       116 ~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees-----------~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s  184 (288)
T KOG1586|consen  116 HIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEES-----------VSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSS  184 (288)
T ss_pred             hhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhh-----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33445554443 5777788888887776654322           23344577788888888999999999999987654


Q ss_pred             CCc------hH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 024531          165 ENN------VK-ALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSI  204 (266)
Q Consensus       165 p~~------~~-a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~  204 (266)
                      -+|      .+ .++..|.||+-..+.-.+...+++..+++|.-.+.
T Consensus       185 ~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds  231 (288)
T KOG1586|consen  185 LDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS  231 (288)
T ss_pred             ccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence            443      23 35577999999899999999999999999974433

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.46  E-value=0.00083  Score=58.60  Aligned_cols=104  Identities=16%  Similarity=0.093  Sum_probs=82.5

Q ss_pred             HHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcC
Q 024531           84 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE  163 (266)
Q Consensus        84 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l  163 (266)
                      ..+-+.||.+.-.|+|..|+++|..++.+.-.-..           .+.-....+.+|.+|.-+.++.+||.+.++-|.+
T Consensus       236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~-----------r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaI  304 (639)
T KOG1130|consen  236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGN-----------RTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAI  304 (639)
T ss_pred             HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcc-----------hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            34456799999999999999999999877533211           1222334678999999999999999999987765


Q ss_pred             CC------CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024531          164 DE------NNVKALFRRGKARAELGQTDAAREDFLKAGKFA  198 (266)
Q Consensus       164 ~p------~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~  198 (266)
                      ..      ....+++.+|.+|..+|+.++|+.+.++.+++.
T Consensus       305 AqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s  345 (639)
T KOG1130|consen  305 AQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS  345 (639)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            32      245789999999999999999999988888763

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.45  E-value=0.0069  Score=47.57  Aligned_cols=125  Identities=14%  Similarity=0.138  Sum_probs=94.4

Q ss_pred             HhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc-CCCCchHHHH
Q 024531           94 FKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG-EDENNVKALF  172 (266)
Q Consensus        94 ~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~-l~p~~~~a~~  172 (266)
                      -+.=|.+.+.+...+.++..|....                  .+.+|.+...+|++.+|..+|.+++. +..+++..+.
T Consensus        67 ~q~ldP~R~~Rea~~~~~~ApTvqn------------------r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lL  128 (251)
T COG4700          67 QQKLDPERHLREATEELAIAPTVQN------------------RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLL  128 (251)
T ss_pred             HHhcChhHHHHHHHHHHhhchhHHH------------------HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHH
Confidence            3334555555555666666555332                  67789999999999999999999984 5667888999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCc
Q 024531          173 RRGKARAELGQTDAAREDFLKAGKFAPE--DKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPK  237 (266)
Q Consensus       173 ~~g~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~~~  237 (266)
                      .++++.+..+++..|...+++..+.+|.  .++..-.+.+....++++.+++.. |+...+-.+.+.
T Consensus       129 glA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesa-fe~a~~~ypg~~  194 (251)
T COG4700         129 GLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESA-FEVAISYYPGPQ  194 (251)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHH-HHHHHHhCCCHH
Confidence            9999999999999999999999999986  566666778777777777666555 555555445444

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.44  E-value=0.0089  Score=46.89  Aligned_cols=113  Identities=30%  Similarity=0.254  Sum_probs=65.4

Q ss_pred             HHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHH-HHHHhhCHHHHHHHHHhHhc
Q 024531           84 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAA-CLLKLKRYEEAIGQCSLVLG  162 (266)
Q Consensus        84 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~-~~~~~~~~~~A~~~~~~al~  162 (266)
                      ..+...|......+++..|+..+..++...+....                 .....+. ++...|+++.|+..+.+++.
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~a~~~~~~~~~  158 (291)
T COG0457          96 EALLNLGLLLEALGKYEEALELLEKALALDPDPDL-----------------AEALLALGALYELGDYEEALELYEKALE  158 (291)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcch-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            34445566666666666677766666665554311                 1222233 66666666666666666666


Q ss_pred             CCC---CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH
Q 024531          163 EDE---NNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE-DKSIARELRLLAE  213 (266)
Q Consensus       163 l~p---~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~l~~l~~  213 (266)
                      .+|   .....++..+..+...++++.|+..+.+++...|. .......+..+..
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (291)
T COG0457         159 LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYL  213 (291)
T ss_pred             cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHH
Confidence            555   34455555555566666666666666666666666 4555544554433

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.43  E-value=0.00014  Score=40.49  Aligned_cols=32  Identities=25%  Similarity=0.297  Sum_probs=29.5

Q ss_pred             hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCc
Q 024531          136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENN  167 (266)
Q Consensus       136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~  167 (266)
                      ++..+|.+|..+|++++|+.+++++++++|++
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            68899999999999999999999999999854

...

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.39  E-value=0.0058  Score=47.99  Aligned_cols=108  Identities=29%  Similarity=0.327  Sum_probs=87.2

Q ss_pred             HHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCC-chHH
Q 024531           92 ALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDEN-NVKA  170 (266)
Q Consensus        92 ~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~-~~~a  170 (266)
                      .++..|+++.|+..|.+++...|....              ....+...+..+...+++..|+..+.+++...|. ...+
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  204 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPELNE--------------LAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEA  204 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCccc--------------hHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHH
Confidence            788999999999999999886552000              1113555666688899999999999999999999 7999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024531          171 LFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAE  213 (266)
Q Consensus       171 ~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  213 (266)
                      +..++.++...+++..|...+..++...|........+.....
T Consensus       205 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (291)
T COG0457         205 LLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLL  247 (291)
T ss_pred             HHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHH
Confidence            9999999999999999999999999999985555555554444

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.38  E-value=0.00037  Score=39.46  Aligned_cols=28  Identities=25%  Similarity=0.236  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024531          170 ALFRRGKARAELGQTDAAREDFLKAGKF  197 (266)
Q Consensus       170 a~~~~g~~~~~~g~~~~A~~~~~~al~l  197 (266)
                      ++.++|.+|..+|+|++|+.+|+++|.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4667888888888888888888885544

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.36  E-value=0.00055  Score=42.38  Aligned_cols=41  Identities=27%  Similarity=0.339  Sum_probs=34.4

Q ss_pred             hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHH
Q 024531          136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGK  176 (266)
Q Consensus       136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~  176 (266)
                      +++.+|..+.++|+|..|..+++.+|+++|+|..+.--...
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~   43 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL   43 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence            57889999999999999999999999999999887654443

>smart00028 TPR Tetratricopeptide repeats

Probab=97.30  E-value=0.00047  Score=36.80  Aligned_cols=32  Identities=38%  Similarity=0.511  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 024531          169 KALFRRGKARAELGQTDAAREDFLKAGKFAPE  200 (266)
Q Consensus       169 ~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~  200 (266)
                      .+++++|.++..++++++|..+|+.++.++|+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            45667777777777777777777777777664

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.25  E-value=0.00081  Score=59.63  Aligned_cols=88  Identities=20%  Similarity=0.052  Sum_probs=71.5

Q ss_pred             hhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 024531          137 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEK  216 (266)
Q Consensus       137 ~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~  216 (266)
                      +-+-|.-.++-+.|+.|+..|.+||+++|+.+..+-+++.++...++|..|+.++.+|++++|....+...-+....+..
T Consensus         7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~   86 (476)
T KOG0376|consen    7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG   86 (476)
T ss_pred             hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence            55677888899999999999999999999999999999999999999999999999999999986554433333334455


Q ss_pred             HHHHHHHH
Q 024531          217 AVYKKQKE  224 (266)
Q Consensus       217 ~~~~~~~~  224 (266)
                      +..++...
T Consensus        87 ~~~~A~~~   94 (476)
T KOG0376|consen   87 EFKKALLD   94 (476)
T ss_pred             HHHHHHHH
Confidence            55444443

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=97.23  E-value=0.0013  Score=55.30  Aligned_cols=75  Identities=19%  Similarity=0.130  Sum_probs=68.1

Q ss_pred             hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024531          136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRL  210 (266)
Q Consensus       136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~  210 (266)
                      +-.+.|.-..+.|+.++|...+..|+.++|.++.++...|.......+.-+|-.+|-+||.++|.|.+++.+-.+
T Consensus       118 ~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R  192 (472)
T KOG3824|consen  118 LALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR  192 (472)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence            345677777889999999999999999999999999999999999999999999999999999999988766554

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=97.20  E-value=0.0032  Score=52.28  Aligned_cols=77  Identities=22%  Similarity=0.214  Sum_probs=70.2

Q ss_pred             HHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 024531          130 LAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIAR  206 (266)
Q Consensus       130 ~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~  206 (266)
                      .++......|+=..++..++|+.|..+..+.+.++|+++.-+.-+|.+|.++|.+.-|+.+++..++.-|+++.+..
T Consensus       177 ~~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~  253 (269)
T COG2912         177 REILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEM  253 (269)
T ss_pred             HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHH
Confidence            44556678888899999999999999999999999999999999999999999999999999999999999887654

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.17  E-value=0.0013  Score=55.09  Aligned_cols=94  Identities=23%  Similarity=0.308  Sum_probs=77.5

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531           82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  161 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al  161 (266)
                      .+....+.|-..|+.|+|+.|++.|+.|++.....+.                 +-+|+|.|+++.++++.|+++....+
T Consensus       143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl-----------------lAYniALaHy~~~qyasALk~iSEIi  205 (459)
T KOG4340|consen  143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL-----------------LAYNLALAHYSSRQYASALKHISEII  205 (459)
T ss_pred             ccchhccchheeeccccHHHHHHHHHHHHhhcCCCch-----------------hHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            4667788899999999999999999999998776544                 57899999999999999999887665


Q ss_pred             ----cCCCCc-------------------------hHHHHHHHHHHHHcCCHHHHHHHHH
Q 024531          162 ----GEDENN-------------------------VKALFRRGKARAELGQTDAAREDFL  192 (266)
Q Consensus       162 ----~l~p~~-------------------------~~a~~~~g~~~~~~g~~~~A~~~~~  192 (266)
                          +..|..                         ..|+...+-++++.++++.|.+.+-
T Consensus       206 eRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt  265 (459)
T KOG4340|consen  206 ERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT  265 (459)
T ss_pred             HhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence                344421                         4567778889999999999988764

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.11  E-value=0.011  Score=44.68  Aligned_cols=98  Identities=21%  Similarity=0.145  Sum_probs=67.0

Q ss_pred             hHHHHHHHhhCHHHHHHHHHhHhcCCCC----------------------chHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024531          139 NMAACLLKLKRYEEAIGQCSLVLGEDEN----------------------NVKALFRRGKARAELGQTDAAREDFLKAGK  196 (266)
Q Consensus       139 n~a~~~~~~~~~~~A~~~~~~al~l~p~----------------------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~  196 (266)
                      ..|......++...++..+.+++.+...                      ...+...++..+...|++++|+..+++++.
T Consensus        11 ~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~   90 (146)
T PF03704_consen   11 REARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALA   90 (146)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence            3455556677888899999998877432                      134677788899999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHHHHHHHHHH------HHHhcccCCCCCC
Q 024531          197 FAPEDKSIARELRLLAEHEKAVYKKQK------EIYKGIFGPRPEP  236 (266)
Q Consensus       197 l~p~~~~~~~~l~~l~~~~~~~~~~~~------~~~~k~~~~~~~~  236 (266)
                      ++|-+..+...+..+....++...+.+      ..++.-++..|.+
T Consensus        91 ~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~  136 (146)
T PF03704_consen   91 LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP  136 (146)
T ss_dssp             HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred             cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence            999999999999988777666555444      2333445555543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.08  E-value=0.005  Score=56.12  Aligned_cols=105  Identities=25%  Similarity=0.255  Sum_probs=81.0

Q ss_pred             HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhH
Q 024531           81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  160 (266)
Q Consensus        81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~a  160 (266)
                      +.+--+...|..+...|+.++|++.|++++......             ..+..-++..+|.|++-+.+|++|..++.+.
T Consensus       265 ~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~-------------~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L  331 (468)
T PF10300_consen  265 NSALFLFFEGRLERLKGNLEEAIESFERAIESQSEW-------------KQLHHLCYFELAWCHMFQHDWEEAAEYFLRL  331 (468)
T ss_pred             CcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH-------------HhHHHHHHHHHHHHHHHHchHHHHHHHHHHH
Confidence            334455677899999999999999999998533221             2334457899999999999999999999999


Q ss_pred             hcCCCCchHH--HHHHHHHHHHcCCH-------HHHHHHHHHHHhhCC
Q 024531          161 LGEDENNVKA--LFRRGKARAELGQT-------DAAREDFLKAGKFAP  199 (266)
Q Consensus       161 l~l~p~~~~a--~~~~g~~~~~~g~~-------~~A~~~~~~al~l~p  199 (266)
                      ++.+. ..++  .|..|.|+..+++.       ++|.+.|.++-.+-.
T Consensus       332 ~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~  378 (468)
T PF10300_consen  332 LKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ  378 (468)
T ss_pred             Hhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence            98653 3444  45679999999999       888888887766543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.08  E-value=0.0035  Score=53.29  Aligned_cols=81  Identities=19%  Similarity=0.081  Sum_probs=65.7

Q ss_pred             hhhHHHHHHHhhCHHHHHHHHHhHhcCCCCc----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024531          137 HLNMAACLLKLKRYEEAIGQCSLVLGEDENN----VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLA  212 (266)
Q Consensus       137 ~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~----~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  212 (266)
                      |-.-|.-|++-++|..|+..|.++|+....+    .-.|.++|-|...+|+|..|+.++.+++.++|.+..+..--+.|.
T Consensus        84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~  163 (390)
T KOG0551|consen   84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL  163 (390)
T ss_pred             HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence            5567889999999999999999999875443    446789999999999999999999999999999866554444443


Q ss_pred             HHHHH
Q 024531          213 EHEKA  217 (266)
Q Consensus       213 ~~~~~  217 (266)
                      -.++.
T Consensus       164 ~eLe~  168 (390)
T KOG0551|consen  164 LELER  168 (390)
T ss_pred             HHHHH
Confidence            33433

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=97.07  E-value=0.0086  Score=42.86  Aligned_cols=95  Identities=14%  Similarity=0.081  Sum_probs=66.5

Q ss_pred             HhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhC-----------HHHHHHHH
Q 024531           89 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR-----------YEEAIGQC  157 (266)
Q Consensus        89 ~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~-----------~~~A~~~~  157 (266)
                      .+..+|.+|++-+|++..+..+...+++...              ..++...|.++.++..           .-.+++.+
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~--------------~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~   67 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESS--------------WLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECF   67 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCch--------------HHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHH
Confidence            4678999999999999999999988775421              1135555666655442           44567777


Q ss_pred             HhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024531          158 SLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKF  197 (266)
Q Consensus       158 ~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  197 (266)
                      .++..+.|+.+..+|.+|.=+-....|++++.-.+++|.+
T Consensus        68 s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   68 SRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            7777777777777777776666666677777777766654

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.06  E-value=0.015  Score=48.11  Aligned_cols=105  Identities=10%  Similarity=0.029  Sum_probs=81.5

Q ss_pred             hhhhhhhHHHHHHHhhCHHHHHHHHHhHh----cCCC--CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 024531          133 KNPCHLNMAACLLKLKRYEEAIGQCSLVL----GEDE--NNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIAR  206 (266)
Q Consensus       133 ~~~~~~n~a~~~~~~~~~~~A~~~~~~al----~l~p--~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~  206 (266)
                      ...+...++.+.++.|+.+.|..+++++-    .++.  .+.-.+-+.+.+|.-.++|..|...|.+++..||.++.+.+
T Consensus       211 ~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~N  290 (366)
T KOG2796|consen  211 EPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANN  290 (366)
T ss_pred             cHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhc
Confidence            34467889999999999999999998543    3332  34556778889999999999999999999999999998888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCCCCCCcc
Q 024531          207 ELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQ  238 (266)
Q Consensus       207 ~l~~l~~~~~~~~~~~~~~~~k~~~~~~~~~~  238 (266)
                      .-+.|.--+++..++-+.+ ..|....|.+.-
T Consensus       291 nKALcllYlg~l~DAiK~~-e~~~~~~P~~~l  321 (366)
T KOG2796|consen  291 NKALCLLYLGKLKDALKQL-EAMVQQDPRHYL  321 (366)
T ss_pred             hHHHHHHHHHHHHHHHHHH-HHHhccCCccch
Confidence            8887776677777776664 456655554443

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.04  E-value=0.017  Score=52.69  Aligned_cols=118  Identities=23%  Similarity=0.220  Sum_probs=86.6

Q ss_pred             HHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhh--------hchhHHHHHHHhh-------hhh-hhhHHHHHHHh
Q 024531           84 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQ--------LFGKYRDMALAVK-------NPC-HLNMAACLLKL  147 (266)
Q Consensus        84 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~--------~~~~~~~~~~~l~-------~~~-~~n~a~~~~~~  147 (266)
                      ..+...-+.+-+.++|++|+..-.+.+...|++...-        ..+...+.+.-+.       ... .+..|.|++++
T Consensus        13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrl   92 (652)
T KOG2376|consen   13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRL   92 (652)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHc
Confidence            3445555677788999999999999999987754330        0112222221111       111 25789999999


Q ss_pred             hCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 024531          148 KRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSI  204 (266)
Q Consensus       148 ~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~  204 (266)
                      ++.++|+..++   .+++.+.+.+.-.|++++.+|+|++|...|+...+-+.++.+.
T Consensus        93 nk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~  146 (652)
T KOG2376|consen   93 NKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDE  146 (652)
T ss_pred             ccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHH
Confidence            99999999998   6677778889999999999999999999999998877665443

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.97  E-value=0.0013  Score=53.12  Aligned_cols=61  Identities=23%  Similarity=0.229  Sum_probs=56.3

Q ss_pred             HHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 024531          142 ACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK  202 (266)
Q Consensus       142 ~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~  202 (266)
                      ....+.++.+.|.+.|++++++.|.+...||++|....+.|+++.|.+.|++.++++|++.
T Consensus         3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            3445678899999999999999999999999999999999999999999999999999864

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.96  E-value=0.059  Score=45.69  Aligned_cols=124  Identities=15%  Similarity=0.094  Sum_probs=91.5

Q ss_pred             CCCHHHHHHHHHHHHHHhHHHHhhc-cHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHH
Q 024531           73 DMTVEERIGAADRRKMDGNALFKEE-KLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYE  151 (266)
Q Consensus        73 ~~~~~~~~~~~~~~~~~g~~~~~~g-~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~  151 (266)
                      .+.+......+..+++.|...+..+ ++..|...+++|.++.+....   .+.......++...++..++.+|+..+.++
T Consensus        25 ~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~---~~~~~~~~~elr~~iL~~La~~~l~~~~~~  101 (278)
T PF08631_consen   25 SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGK---MDKLSPDGSELRLSILRLLANAYLEWDTYE  101 (278)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhh---ccccCCcHHHHHHHHHHHHHHHHHcCCChH
Confidence            4566777788999999999999999 999999999999999644110   011122235667778999999999988754


Q ss_pred             ---HHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 024531          152 ---EAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAP  199 (266)
Q Consensus       152 ---~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p  199 (266)
                         +|....+.+-.-.|+.+..++..=.++...++.+++.+.+.+.+..-+
T Consensus       102 ~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~  152 (278)
T PF08631_consen  102 SVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD  152 (278)
T ss_pred             HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence               344444455555677777775555556668999999999999888654

It is also involved in sporulation [].

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=96.94  E-value=0.015  Score=55.79  Aligned_cols=146  Identities=13%  Similarity=-0.044  Sum_probs=101.0

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhh--hccchhhhh-------chhHH---HHHHHh--------hhhhhhhHHH
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAY--MGDDFMFQL-------FGKYR---DMALAV--------KNPCHLNMAA  142 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~--~~~~~~~~~-------~~~~~---~~~~~l--------~~~~~~n~a~  142 (266)
                      ...+......+.+.|+.++|++.|.+.+..  .|+...+..       .+...   +....+        ....|..+..
T Consensus       391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~  470 (697)
T PLN03081        391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE  470 (697)
T ss_pred             eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence            456777888888999999999999987653  344332210       11111   111111        1225777889


Q ss_pred             HHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 024531          143 CLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQ  222 (266)
Q Consensus       143 ~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~  222 (266)
                      +|.+.|++++|.+.+++. ...| +...|..+..++...|+++.|...+++.+.++|++......|..++...++.+++.
T Consensus       471 ~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~  548 (697)
T PLN03081        471 LLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAA  548 (697)
T ss_pred             HHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHH
Confidence            999999999999988765 3444 45668888889999999999999999999999998877777777766666554443


Q ss_pred             HHHHhcccC
Q 024531          223 KEIYKGIFG  231 (266)
Q Consensus       223 ~~~~~k~~~  231 (266)
                      + .++.|-+
T Consensus       549 ~-v~~~m~~  556 (697)
T PLN03081        549 K-VVETLKR  556 (697)
T ss_pred             H-HHHHHHH
Confidence            3 3455543

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.93  E-value=0.021  Score=48.84  Aligned_cols=148  Identities=14%  Similarity=0.061  Sum_probs=95.0

Q ss_pred             HHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhh--------hhchhHHHHH---HHhh----------hhhhhhHHHH
Q 024531           85 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMF--------QLFGKYRDMA---LAVK----------NPCHLNMAAC  143 (266)
Q Consensus        85 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~--------~~~~~~~~~~---~~l~----------~~~~~n~a~~  143 (266)
                      .....+..++.+|++.+|...+.+.|+-.|.+...        -..+....+.   ..+.          .-++--.|.+
T Consensus       105 k~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFg  184 (491)
T KOG2610|consen  105 KRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFG  184 (491)
T ss_pred             hhhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhh
Confidence            34456778899999999999999999988876432        0122211111   1111          1122346788


Q ss_pred             HHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHH--HHHHHHHHHHHHHHH
Q 024531          144 LLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED--KSI--ARELRLLAEHEKAVY  219 (266)
Q Consensus       144 ~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~--~~~--~~~l~~l~~~~~~~~  219 (266)
                      +...|-|++|.+..+++++++|.+.++....+.++...|++.++.+...+--..-...  -..  .-+-+.+...-.+++
T Consensus       185 L~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye  264 (491)
T KOG2610|consen  185 LEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYE  264 (491)
T ss_pred             HHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchh
Confidence            8888999999999999999999999999999999999999999998877543222111  000  112233333345566


Q ss_pred             HHHHHHHhcccCC
Q 024531          220 KKQKEIYKGIFGP  232 (266)
Q Consensus       220 ~~~~~~~~k~~~~  232 (266)
                      .+..-+-+.|+..
T Consensus       265 ~aleIyD~ei~k~  277 (491)
T KOG2610|consen  265 KALEIYDREIWKR  277 (491)
T ss_pred             HHHHHHHHHHHHH
Confidence            5555555566543

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.93  E-value=0.028  Score=50.18  Aligned_cols=89  Identities=20%  Similarity=0.203  Sum_probs=50.8

Q ss_pred             hhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHH----------------------------
Q 024531           95 KEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLK----------------------------  146 (266)
Q Consensus        95 ~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~----------------------------  146 (266)
                      ...+.+.+.+.|+.+|++.|...-.             ..++....|.--++                            
T Consensus       378 e~ed~ertr~vyq~~l~lIPHkkFt-------------FaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YI  444 (677)
T KOG1915|consen  378 EAEDVERTRQVYQACLDLIPHKKFT-------------FAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYI  444 (677)
T ss_pred             HhhhHHHHHHHHHHHHhhcCcccch-------------HHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHH
Confidence            3578899999999999999974221             22233333444444                            


Q ss_pred             -----hhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024531          147 -----LKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGK  196 (266)
Q Consensus       147 -----~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~  196 (266)
                           +++++.+...|.+-|+..|.+..+|...|..-..+|+.+.|...|.-|++
T Consensus       445 elElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~  499 (677)
T KOG1915|consen  445 ELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAIS  499 (677)
T ss_pred             HHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence                 44455555555555555555555555555555555555555555554444

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.93  E-value=0.0074  Score=52.03  Aligned_cols=100  Identities=20%  Similarity=0.182  Sum_probs=63.8

Q ss_pred             HHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCC
Q 024531           87 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDEN  166 (266)
Q Consensus        87 ~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~  166 (266)
                      ...|+.+...+.|+++++.|+.|+++..+..+.           -+...++..+|..|..+.++++|+-+..+|.++-..
T Consensus       126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~-----------~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s  194 (518)
T KOG1941|consen  126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDA-----------MLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNS  194 (518)
T ss_pred             hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCc-----------eeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHh
Confidence            347888888899999999999999876553321           111224556666666666666666666666554221


Q ss_pred             ----------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024531          167 ----------NVKALFRRGKARAELGQTDAAREDFLKAGKF  197 (266)
Q Consensus       167 ----------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  197 (266)
                                ..-++|+++.++..+|..-.|.++.+.+.++
T Consensus       195 ~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl  235 (518)
T KOG1941|consen  195 YGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL  235 (518)
T ss_pred             cCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence                      1234566666666666666666666666554

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=96.93  E-value=0.011  Score=56.62  Aligned_cols=62  Identities=8%  Similarity=-0.063  Sum_probs=56.9

Q ss_pred             hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024531          136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKF  197 (266)
Q Consensus       136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  197 (266)
                      .+..+..++...|+++.|...++++++++|++...|..++.+|...|++++|.+.++...+.
T Consensus       496 ~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~  557 (697)
T PLN03081        496 MWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK  557 (697)
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence            46777788889999999999999999999999999999999999999999999999987754

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.93  E-value=0.09  Score=42.75  Aligned_cols=103  Identities=19%  Similarity=0.169  Sum_probs=73.3

Q ss_pred             hHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhC-------HHHHHHHHHhHhc
Q 024531           90 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR-------YEEAIGQCSLVLG  162 (266)
Q Consensus        90 g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~-------~~~A~~~~~~al~  162 (266)
                      +..+-....+++|+..|.-|+-...-....          ....+.++..+|.+|..+|+       +..|+..|.+++.
T Consensus        84 ~~~~~~~Rt~~~ai~~YkLAll~~~~~~~~----------~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~  153 (214)
T PF09986_consen   84 PRDFSGERTLEEAIESYKLALLCAQIKKEK----------PSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYE  153 (214)
T ss_pred             cCCCCCCCCHHHHHHHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHH
Confidence            345556678999999999998754211000          11244468889999999888       4556666666665


Q ss_pred             CCCC------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 024531          163 EDEN------NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK  202 (266)
Q Consensus       163 l~p~------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~  202 (266)
                      ....      .....|.+|..+..+|++++|..+|.+++..-..+.
T Consensus       154 ~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~  199 (214)
T PF09986_consen  154 NEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK  199 (214)
T ss_pred             hCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence            4322      357899999999999999999999999998654433

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.92  E-value=0.022  Score=49.54  Aligned_cols=119  Identities=16%  Similarity=0.019  Sum_probs=83.7

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  162 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~  162 (266)
                      .+.....+..+...|++++|.+....++...-+...                  +.  =.-..+-+++..=++..++.++
T Consensus       263 p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L------------------~~--~~~~l~~~d~~~l~k~~e~~l~  322 (400)
T COG3071         263 PELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL------------------CR--LIPRLRPGDPEPLIKAAEKWLK  322 (400)
T ss_pred             hhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH------------------HH--HHhhcCCCCchHHHHHHHHHHH
Confidence            344445566777788899999988888876544211                  11  1223356677778888888888


Q ss_pred             CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 024531          163 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQ  222 (266)
Q Consensus       163 l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~  222 (266)
                      ..|+++..++.+|..++..+.|.+|..+|+.++...|+..+ ...++.+...+.+...++
T Consensus       323 ~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~-~~~la~~~~~~g~~~~A~  381 (400)
T COG3071         323 QHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASD-YAELADALDQLGEPEEAE  381 (400)
T ss_pred             hCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhh-HHHHHHHHHHcCChHHHH
Confidence            88888888888888888888888888888888888887433 345666666655544443

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.90  E-value=0.00086  Score=37.93  Aligned_cols=28  Identities=21%  Similarity=0.165  Sum_probs=24.1

Q ss_pred             hhhhHHHHHHHhhCHHHHHHHHHhHhcC
Q 024531          136 CHLNMAACLLKLKRYEEAIGQCSLVLGE  163 (266)
Q Consensus       136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l  163 (266)
                      ++.++|.+|.++|+|++|+.+|+++|.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3789999999999999999999996654

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.89  E-value=0.00097  Score=36.52  Aligned_cols=32  Identities=25%  Similarity=0.415  Sum_probs=29.8

Q ss_pred             hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCc
Q 024531          136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENN  167 (266)
Q Consensus       136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~  167 (266)
                      +++++|.|+.+.|++++|+..+++++...|++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            58899999999999999999999999999874

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.87  E-value=0.03  Score=55.33  Aligned_cols=102  Identities=13%  Similarity=-0.035  Sum_probs=67.7

Q ss_pred             HHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCC-
Q 024531           87 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDE-  165 (266)
Q Consensus        87 ~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p-  165 (266)
                      ...|..+...|+++.|...+.+++........           ......++.++|.++...|+++.|...+.+++.+.. 
T Consensus       495 ~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~-----------~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~  563 (903)
T PRK04841        495 SVLGEVHHCKGELARALAMMQQTEQMARQHDV-----------YHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEE  563 (903)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc-----------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            44555556666666666666666654332111           001122567888899999999999999988876521 


Q ss_pred             -------CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 024531          166 -------NNVKALFRRGKARAELGQTDAAREDFLKAGKFAP  199 (266)
Q Consensus       166 -------~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p  199 (266)
                             .....+..+|.++...|++++|...+.+++.+..
T Consensus       564 ~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~  604 (903)
T PRK04841        564 QHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS  604 (903)
T ss_pred             hccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence                   1223455778888899999999999998887643

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.85  E-value=0.023  Score=44.75  Aligned_cols=102  Identities=18%  Similarity=0.046  Sum_probs=76.9

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  162 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~  162 (266)
                      -..+..+|+.+.+.|+++.|++.|.++.+.+.....              .+..+.++-.+.+..++|..+..+..++-.
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~--------------~id~~l~~irv~i~~~d~~~v~~~i~ka~~  101 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGH--------------KIDMCLNVIRVAIFFGDWSHVEKYIEKAES  101 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHH--------------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            456678999999999999999999998887655322              444677888888889999999999888865


Q ss_pred             CCC--Cch----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024531          163 EDE--NNV----KALFRRGKARAELGQTDAAREDFLKAGKFA  198 (266)
Q Consensus       163 l~p--~~~----~a~~~~g~~~~~~g~~~~A~~~~~~al~l~  198 (266)
                      +-.  .+.    +.....|..++..++|.+|...|-.+..-.
T Consensus       102 ~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen  102 LIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             HHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence            422  222    223345888888999999999987776544

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.81  E-value=0.022  Score=51.94  Aligned_cols=98  Identities=17%  Similarity=0.050  Sum_probs=78.5

Q ss_pred             hccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCC----chHHH
Q 024531           96 EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDEN----NVKAL  171 (266)
Q Consensus        96 ~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~----~~~a~  171 (266)
                      ..+...|.+.........|+...                 .+...|..+...|+.++|+..+++++...+.    ..-++
T Consensus       246 ~~~~~~a~~lL~~~~~~yP~s~l-----------------fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~  308 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKRYPNSAL-----------------FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCY  308 (468)
T ss_pred             CCCHHHHHHHHHHHHHhCCCcHH-----------------HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHH
Confidence            44677788888888888888655                 3788999999999999999999999854333    23478


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024531          172 FRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRL  210 (266)
Q Consensus       172 ~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~  210 (266)
                      |.+|.++..+.+|++|..+|.+..+.+.-.+.....+.-
T Consensus       309 ~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a  347 (468)
T PF10300_consen  309 FELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA  347 (468)
T ss_pred             HHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence            899999999999999999999999977665555444443

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>smart00028 TPR Tetratricopeptide repeats

Probab=96.78  E-value=0.0025  Score=33.77  Aligned_cols=32  Identities=34%  Similarity=0.443  Sum_probs=29.5

Q ss_pred             hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCc
Q 024531          136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENN  167 (266)
Q Consensus       136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~  167 (266)
                      ++.++|.++..+++++.|+..+.++++++|.+
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            58899999999999999999999999998853

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PLN03077 Protein ECB2; Provisional

Probab=96.76  E-value=0.034  Score=54.70  Aligned_cols=136  Identities=9%  Similarity=-0.082  Sum_probs=91.8

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHh--hhccchhhhh-------chhHHH---HHHHh--------hhhhhhhHHH
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIA--YMGDDFMFQL-------FGKYRD---MALAV--------KNPCHLNMAA  142 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~--~~~~~~~~~~-------~~~~~~---~~~~l--------~~~~~~n~a~  142 (266)
                      ...+......+.+.|+.++|+..|++..+  ..|+...+..       .+...+   ....+        ....|..+..
T Consensus       554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~  633 (857)
T PLN03077        554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVD  633 (857)
T ss_pred             hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence            44577888889999999999999998876  3455433311       111111   11111        1235677788


Q ss_pred             HHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 024531          143 CLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYK  220 (266)
Q Consensus       143 ~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~  220 (266)
                      ++.+.|++++|...+++. .+.|+ ...|..+-.++...++.+.|....+++++++|++......|..++...++-.+
T Consensus       634 ~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~  709 (857)
T PLN03077        634 LLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDE  709 (857)
T ss_pred             HHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHH
Confidence            888888888888888775 35554 45555555567778888888888888888888888888777777665554443

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.75  E-value=0.011  Score=40.97  Aligned_cols=65  Identities=14%  Similarity=0.148  Sum_probs=51.7

Q ss_pred             HHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHHHH
Q 024531          153 AIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED--KSIARELRLLAEHEKA  217 (266)
Q Consensus       153 A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~--~~~~~~l~~l~~~~~~  217 (266)
                      .+..+.+.+..+|++..+.|.+|.++...|++++|++.+-.++..+|+.  ..+++.|-.+-..++.
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~   73 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP   73 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence            4567888999999999999999999999999999999999999999864  6777766666555544

>PLN03218 maturation of RBCL 1; Provisional

Probab=96.75  E-value=0.053  Score=54.29  Aligned_cols=100  Identities=12%  Similarity=0.052  Sum_probs=62.3

Q ss_pred             hhhhhHHHHHHHhhCHHHHHHHHHhHhc--CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHH
Q 024531          135 PCHLNMAACLLKLKRYEEAIGQCSLVLG--EDENNVKALFRRGKARAELGQTDAAREDFLKAGK--FAPEDKSIARELRL  210 (266)
Q Consensus       135 ~~~~n~a~~~~~~~~~~~A~~~~~~al~--l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~l~~  210 (266)
                      ..|..+..+|.+.|++++|+..|+....  ..| +...|..+..+|.+.|++++|.+.|++...  +.|+.......+. 
T Consensus       685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~-  762 (1060)
T PLN03218        685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV-  762 (1060)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-
Confidence            3567777888888888888888877653  344 456677788888888888888888887654  3455444433333 


Q ss_pred             HHHHHHHHHHHHHHHHhcccCCCCCCc
Q 024531          211 LAEHEKAVYKKQKEIYKGIFGPRPEPK  237 (266)
Q Consensus       211 l~~~~~~~~~~~~~~~~k~~~~~~~~~  237 (266)
                      .....+.. +...+.+..|....-.++
T Consensus       763 a~~k~G~l-e~A~~l~~~M~k~Gi~pd  788 (1060)
T PLN03218        763 ASERKDDA-DVGLDLLSQAKEDGIKPN  788 (1060)
T ss_pred             HHHHCCCH-HHHHHHHHHHHHcCCCCC
Confidence            32333333 344555667665443333

>PLN03218 maturation of RBCL 1; Provisional

Probab=96.72  E-value=0.046  Score=54.73  Aligned_cols=60  Identities=8%  Similarity=-0.027  Sum_probs=31.0

Q ss_pred             hhhHHHHHHHhhCHHHHHHHHHhHhcCC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024531          137 HLNMAACLLKLKRYEEAIGQCSLVLGED-ENNVKALFRRGKARAELGQTDAAREDFLKAGK  196 (266)
Q Consensus       137 ~~n~a~~~~~~~~~~~A~~~~~~al~l~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~  196 (266)
                      |..+-.+|.+.|++++|...++...+.+ +.+...|..+..+|.+.|++++|...|.+...
T Consensus       582 ynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~  642 (1060)
T PLN03218        582 VGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK  642 (1060)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            4444555555555555555555555443 22344444555555555555555555555444

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.70  E-value=0.019  Score=48.38  Aligned_cols=123  Identities=19%  Similarity=0.143  Sum_probs=80.1

Q ss_pred             HHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhH---
Q 024531           84 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV---  160 (266)
Q Consensus        84 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~a---  160 (266)
                      ..+.-.|-+++...+|..|...|.+.-.+.|....+                 ...-|+.+.+.+.+.+|+......   
T Consensus        45 AgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qY-----------------rlY~AQSLY~A~i~ADALrV~~~~~D~  107 (459)
T KOG4340|consen   45 AGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQY-----------------RLYQAQSLYKACIYADALRVAFLLLDN  107 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHH-----------------HHHHHHHHHHhcccHHHHHHHHHhcCC
Confidence            345567899999999999999999988888875433                 222333344444444443333221   


Q ss_pred             ---------------------------hcCCC--CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024531          161 ---------------------------LGEDE--NNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL  211 (266)
Q Consensus       161 ---------------------------l~l~p--~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l  211 (266)
                                                 ++.-|  +......+.|.+.++-|+|++|++-|+.|++...-++-+...++.+
T Consensus       108 ~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALa  187 (459)
T KOG4340|consen  108 PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALA  187 (459)
T ss_pred             HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHH
Confidence                                       12222  3456677788888888888888888888888877777777777766


Q ss_pred             HHHHHHHHHHHH
Q 024531          212 AEHEKAVYKKQK  223 (266)
Q Consensus       212 ~~~~~~~~~~~~  223 (266)
                      +-..+++..+.+
T Consensus       188 Hy~~~qyasALk  199 (459)
T KOG4340|consen  188 HYSSRQYASALK  199 (459)
T ss_pred             HHhhhhHHHHHH
Confidence            555555544444

>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=96.66  E-value=0.0014  Score=50.56  Aligned_cols=38  Identities=21%  Similarity=0.324  Sum_probs=35.0

Q ss_pred             ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCC
Q 024531            2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEG   40 (266)
Q Consensus         2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g   40 (266)
                      ++|.+ ++++||+.+|..|+.|++..|.|+|..+||...
T Consensus        38 ~~G~g-~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d   75 (156)
T PRK15095         38 RLGDG-SLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPS   75 (156)
T ss_pred             EeCCC-CccHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence            57877 899999999999999999999999999999754

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.64  E-value=0.00071  Score=57.54  Aligned_cols=88  Identities=11%  Similarity=-0.045  Sum_probs=67.3

Q ss_pred             HHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 024531          142 ACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKK  221 (266)
Q Consensus       142 ~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~  221 (266)
                      .-.+..|+++.|+.+|..++.++|.....|-.++.++..++....|+.+|..+++++|+...-...-...+..++.-.++
T Consensus       122 ~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~a  201 (377)
T KOG1308|consen  122 SEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEA  201 (377)
T ss_pred             HHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHH
Confidence            33445678999999999999999999999999999999999999999999999999998765444444443334443333


Q ss_pred             HHHHHhccc
Q 024531          222 QKEIYKGIF  230 (266)
Q Consensus       222 ~~~~~~k~~  230 (266)
                       ..++....
T Consensus       202 -a~dl~~a~  209 (377)
T KOG1308|consen  202 -AHDLALAC  209 (377)
T ss_pred             -HHHHHHHH
Confidence             33344443

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.61  E-value=0.22  Score=38.28  Aligned_cols=114  Identities=8%  Similarity=-0.104  Sum_probs=89.2

Q ss_pred             HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhH
Q 024531           81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  160 (266)
Q Consensus        81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~a  160 (266)
                      ..+..+.+........++.+++...+...--+.|....                 +-..-|..++..|+|.+|+..++.+
T Consensus         8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e-----------------~~~~~~~l~i~r~~w~dA~rlLr~l   70 (160)
T PF09613_consen    8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPE-----------------LDLFDGWLHIVRGDWDDALRLLREL   70 (160)
T ss_pred             HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchH-----------------HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            34566777788888889999999999988888898655                 4677899999999999999999999


Q ss_pred             hcCCCCchHHHHHHHHHHHHcCCHHHHHHHH-HHHHhhCCCCHHHHHHHHHHHHH
Q 024531          161 LGEDENNVKALFRRGKARAELGQTDAAREDF-LKAGKFAPEDKSIARELRLLAEH  214 (266)
Q Consensus       161 l~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~-~~al~l~p~~~~~~~~l~~l~~~  214 (266)
                      ..-.|..+-+--.++.|++.+++.+  -..+ +.+++. +.++.+...++.+..+
T Consensus        71 ~~~~~~~p~~kALlA~CL~~~~D~~--Wr~~A~evle~-~~d~~a~~Lv~~Ll~~  122 (160)
T PF09613_consen   71 EERAPGFPYAKALLALCLYALGDPS--WRRYADEVLES-GADPDARALVRALLAR  122 (160)
T ss_pred             hccCCCChHHHHHHHHHHHHcCChH--HHHHHHHHHhc-CCChHHHHHHHHHHHh
Confidence            9999998888888999999999873  2222 234443 4467777777766443

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=96.57  E-value=0.05  Score=54.36  Aligned_cols=64  Identities=23%  Similarity=0.181  Sum_probs=30.9

Q ss_pred             hhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 024531          137 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE  200 (266)
Q Consensus       137 ~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~  200 (266)
                      |..++-+|.+-+.+++|.+.++..++--.+..+.|...|..++.+++-++|...+.+||.--|.
T Consensus      1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence            4444444444445555555544444444344444444444444444444444445555444444

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=96.55  E-value=0.018  Score=52.55  Aligned_cols=101  Identities=13%  Similarity=0.021  Sum_probs=86.0

Q ss_pred             HHHHhHHHH-hhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCC
Q 024531           86 RKMDGNALF-KEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED  164 (266)
Q Consensus        86 ~~~~g~~~~-~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~  164 (266)
                      +...+..|+ .+|+..+|+..|..++-+.|.....               .++..+|.++.+.|...+|--.+..|+.-.
T Consensus       215 lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kd---------------i~lLSlaTiL~RaG~sadA~iILhAA~~dA  279 (886)
T KOG4507|consen  215 LHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKD---------------IALLSLATVLHRAGFSADAAVILHAALDDA  279 (886)
T ss_pred             HHHHHHHHHHHcCChhhhhHHHHHHhhhCCccccc---------------chhhhHHHHHHHcccccchhheeehhccCC
Confidence            344455554 4799999999999999988763321               157889999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 024531          165 ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED  201 (266)
Q Consensus       165 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~  201 (266)
                      |.....+|.+|.++.++++|.....+|..+.+.+|.-
T Consensus       280 ~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f  316 (886)
T KOG4507|consen  280 DFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGF  316 (886)
T ss_pred             ccccccceeHHHHHHHHhhhhhhhhhhhhhhccCcch
Confidence            9888889999999999999999999999999999974

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=96.55  E-value=0.02  Score=38.20  Aligned_cols=68  Identities=15%  Similarity=0.195  Sum_probs=56.0

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531           82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  161 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al  161 (266)
                      .+....+.|..+|..++.++|+..+.++++..++...              .-.++-.+..+|...|+|.+++.+...=+
T Consensus         5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~--------------rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~   70 (80)
T PF10579_consen    5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITDRED--------------RFRVLGYLIQAHMEWGKYREMLAFALQQL   70 (80)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677889999999999999999999999998877443              33467778899999999999998876655


Q ss_pred             cC
Q 024531          162 GE  163 (266)
Q Consensus       162 ~l  163 (266)
                      .+
T Consensus        71 ~~   72 (80)
T PF10579_consen   71 EI   72 (80)
T ss_pred             HH
Confidence            43

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=96.53  E-value=0.04  Score=46.42  Aligned_cols=107  Identities=18%  Similarity=0.100  Sum_probs=81.6

Q ss_pred             hHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchH
Q 024531           90 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVK  169 (266)
Q Consensus        90 g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~  169 (266)
                      |......+++.++...+...... +++....-........++....++..++..+...++++.++...++.+..+|-+..
T Consensus       110 ~~~~~~~~~~~~~~~~~~~g~~~-~d~~f~~WV~~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~  188 (280)
T COG3629         110 GLKARAGLRFEQAGELLSEGPVL-GDDRFDEWVLEQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEP  188 (280)
T ss_pred             ccchhhhHHHHHHHHHhhcCCcC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchH
Confidence            33334444555555555541111 12222223445556667778889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024531          170 ALFRRGKARAELGQTDAAREDFLKAGKF  197 (266)
Q Consensus       170 a~~~~g~~~~~~g~~~~A~~~~~~al~l  197 (266)
                      +|.++-.+|+..|+...|+..|++.-.+
T Consensus       189 ~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         189 AYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            9999999999999999999999988774

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.43  E-value=0.014  Score=49.98  Aligned_cols=94  Identities=13%  Similarity=-0.028  Sum_probs=71.3

Q ss_pred             HhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCc----hH
Q 024531           94 FKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN----VK  169 (266)
Q Consensus        94 ~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~----~~  169 (266)
                      ...|-|++|.+.-.+++++++.+..                 +....|.++...+++.++.++..+--......    ..
T Consensus       186 ~E~g~y~dAEk~A~ralqiN~~D~W-----------------a~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasH  248 (491)
T KOG2610|consen  186 EECGIYDDAEKQADRALQINRFDCW-----------------ASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASH  248 (491)
T ss_pred             HHhccchhHHHHHHhhccCCCcchH-----------------HHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhh
Confidence            3457788888888888888888766                 46678899999999999999887764433221    23


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHH
Q 024531          170 ALFRRGKARAELGQTDAAREDFLKAGK--FAPEDKSI  204 (266)
Q Consensus       170 a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~~~~  204 (266)
                      .|..-|.+|..-++|+.|++.|.+-+-  ++.+|..+
T Consensus       249 NyWH~Al~~iE~aeye~aleIyD~ei~k~l~k~Da~a  285 (491)
T KOG2610|consen  249 NYWHTALFHIEGAEYEKALEIYDREIWKRLEKDDAVA  285 (491)
T ss_pred             hhHHHHHhhhcccchhHHHHHHHHHHHHHhhccchhh
Confidence            466789999999999999999987654  45555533

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.42  E-value=0.065  Score=45.48  Aligned_cols=109  Identities=15%  Similarity=0.018  Sum_probs=79.3

Q ss_pred             HHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHH-hhCHHHHHHHHHhHhcCCCC
Q 024531           88 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLK-LKRYEEAIGQCSLVLGEDEN  166 (266)
Q Consensus        88 ~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~-~~~~~~A~~~~~~al~l~p~  166 (266)
                      ...+..-+.+..+.|-..|.+|+...+-...                 +|...|..-.. .++...|...|+.+++..|.
T Consensus         6 ~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~-----------------vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~   68 (280)
T PF05843_consen    6 QYMRFMRRTEGIEAARKVFKRARKDKRCTYH-----------------VYVAYALMEYYCNKDPKRARKIFERGLKKFPS   68 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCCCS-TH-----------------HHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHcCCCCCHH-----------------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC
Confidence            3344445556688999999999854333222                 57777888666 45666699999999999999


Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHH
Q 024531          167 NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK---SIARELRLLAE  213 (266)
Q Consensus       167 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~l~~l~~  213 (266)
                      +...+..-..-+..+++.+.|...|++++..-|.+.   .++........
T Consensus        69 ~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~  118 (280)
T PF05843_consen   69 DPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFES  118 (280)
T ss_dssp             -HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence            999999989999999999999999999999877755   34444444433

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.40  E-value=0.15  Score=42.45  Aligned_cols=116  Identities=20%  Similarity=0.153  Sum_probs=79.9

Q ss_pred             HhHHHHhhccHHHHHHHHHHHHhhhccchhh----------hhchhHHHH---HHHh------hhhhhhhHHHHHHHhhC
Q 024531           89 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMF----------QLFGKYRDM---ALAV------KNPCHLNMAACLLKLKR  149 (266)
Q Consensus        89 ~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~----------~~~~~~~~~---~~~l------~~~~~~n~a~~~~~~~~  149 (266)
                      .-.++.+..+++.|.....+..+++.+....          ...++.++-   .+++      ...+++..|.|++.+++
T Consensus       143 ~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~  222 (299)
T KOG3081|consen  143 NVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGR  222 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcC
Confidence            3455666677777777777776665442111          001111110   0111      12357789999999999


Q ss_pred             HHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHH-HHHHHhhCCCCHHH
Q 024531          150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAARED-FLKAGKFAPEDKSI  204 (266)
Q Consensus       150 ~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~-~~~al~l~p~~~~~  204 (266)
                      |++|......+|.-+++++..+-++-.+-..+|.-.++... +.+....+|+++-+
T Consensus       223 ~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v  278 (299)
T KOG3081|consen  223 YEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV  278 (299)
T ss_pred             HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence            99999999999999999999999999999999988776655 55566667876644

>PLN03077 Protein ECB2; Provisional

Probab=96.39  E-value=0.053  Score=53.36  Aligned_cols=108  Identities=10%  Similarity=0.039  Sum_probs=58.0

Q ss_pred             HHhHHHHhhccHHHHHHHHHHHHhhhccchhhh-------hchhHHH---HHHHh-------hhhhhhhHHHHHHHhhCH
Q 024531           88 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQ-------LFGKYRD---MALAV-------KNPCHLNMAACLLKLKRY  150 (266)
Q Consensus        88 ~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~-------~~~~~~~---~~~~l-------~~~~~~n~a~~~~~~~~~  150 (266)
                      ..-+.|.+.|++++|...|...   .++...++       ..+...+   ...++       ....+..+-.++.+.|.+
T Consensus       529 aLi~~y~k~G~~~~A~~~f~~~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v  605 (857)
T PLN03077        529 ALLDLYVRCGRMNYAWNQFNSH---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMV  605 (857)
T ss_pred             HHHHHHHHcCCHHHHHHHHHhc---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChH
Confidence            4556788899999999999886   33321110       0011000   00110       011233344455566666


Q ss_pred             HHHHHHHHhHhcC---CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 024531          151 EEAIGQCSLVLGE---DENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE  200 (266)
Q Consensus       151 ~~A~~~~~~al~l---~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~  200 (266)
                      ++|..+++...+.   .| +...|..+..++.+.|++++|.+.+++. .+.|+
T Consensus       606 ~ea~~~f~~M~~~~gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd  656 (857)
T PLN03077        606 TQGLEYFHSMEEKYSITP-NLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD  656 (857)
T ss_pred             HHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC
Confidence            6666666665522   22 3455666677777777777777766653 34555

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.34  E-value=0.047  Score=53.93  Aligned_cols=102  Identities=14%  Similarity=0.040  Sum_probs=80.3

Q ss_pred             HHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCC
Q 024531           85 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED  164 (266)
Q Consensus        85 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~  164 (266)
                      .....|..++..|+++.|...+.+++...+....            .....+..++|.++...|+++.|...+.+++...
T Consensus       454 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~------------~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~  521 (903)
T PRK04841        454 FNALRAQVAINDGDPEEAERLAELALAELPLTWY------------YSRIVATSVLGEVHHCKGELARALAMMQQTEQMA  521 (903)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccH------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            3345678889999999999999999986554211            0122256789999999999999999999998653


Q ss_pred             CC------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024531          165 EN------NVKALFRRGKARAELGQTDAAREDFLKAGKFA  198 (266)
Q Consensus       165 p~------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~  198 (266)
                      ..      ...++..+|.++...|++++|...+++++.+.
T Consensus       522 ~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~  561 (903)
T PRK04841        522 RQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLI  561 (903)
T ss_pred             hhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            32      13567789999999999999999999999863

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=96.28  E-value=0.14  Score=46.17  Aligned_cols=97  Identities=22%  Similarity=0.226  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHH
Q 024531          101 EAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAE  180 (266)
Q Consensus       101 ~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~  180 (266)
                      .-...|+.|....+.+..                 ++.+...-..+.+.+.+--..|.++|...|+++..|...|.=.+.
T Consensus        89 rIv~lyr~at~rf~~D~~-----------------lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe  151 (568)
T KOG2396|consen   89 RIVFLYRRATNRFNGDVK-----------------LWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFE  151 (568)
T ss_pred             HHHHHHHHHHHhcCCCHH-----------------HHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHh
Confidence            344567777777766543                 355544444455568999999999999999999999888877777


Q ss_pred             cCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024531          181 LGQ-TDAAREDFLKAGKFAPEDKSIARELRLLAEH  214 (266)
Q Consensus       181 ~g~-~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  214 (266)
                      .+. .+.|...|.++|+.+|+++..+...-+..-.
T Consensus       152 ~n~ni~saRalflrgLR~npdsp~Lw~eyfrmEL~  186 (568)
T KOG2396|consen  152 INLNIESARALFLRGLRFNPDSPKLWKEYFRMELM  186 (568)
T ss_pred             hccchHHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Confidence            766 9999999999999999999988877766433

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=96.28  E-value=0.074  Score=47.31  Aligned_cols=133  Identities=17%  Similarity=0.131  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHhHHHHhhcc-HHHHHHHHHHHHhhhccchhhhh------chhHHHH---------------HHHhh----
Q 024531           80 IGAADRRKMDGNALFKEEK-LEEAMQQYEMAIAYMGDDFMFQL------FGKYRDM---------------ALAVK----  133 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~-~~~A~~~y~~al~~~~~~~~~~~------~~~~~~~---------------~~~l~----  133 (266)
                      ...+..+..-|..+.+.|. -+.|++....++...|.+...+.      ...+.+.               ..+.-    
T Consensus       376 qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i  455 (549)
T PF07079_consen  376 QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPI  455 (549)
T ss_pred             HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcc
Confidence            3445555666778888887 78899999999988887653311      0001110               00000    


Q ss_pred             ------hhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CHH
Q 024531          134 ------NPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE----DKS  203 (266)
Q Consensus       134 ------~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~----~~~  203 (266)
                            ..-...=|.-++..|+|.++..++.-..+++| ++.++.-+|.|++...+|++|..++...   -|+    |..
T Consensus       456 ~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L---P~n~~~~dsk  531 (549)
T PF07079_consen  456 TISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL---PPNERMRDSK  531 (549)
T ss_pred             cccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC---CCchhhHHHH
Confidence                  00112235566779999999999999999999 8999999999999999999999998754   343    456


Q ss_pred             HHHHHHHHHHHHH
Q 024531          204 IARELRLLAEHEK  216 (266)
Q Consensus       204 ~~~~l~~l~~~~~  216 (266)
                      +.+++..|.+.+.
T Consensus       532 vqKAl~lCqKh~~  544 (549)
T PF07079_consen  532 VQKALALCQKHLP  544 (549)
T ss_pred             HHHHHHHHHHhhh
Confidence            6677777755443

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.26  E-value=0.021  Score=48.26  Aligned_cols=79  Identities=23%  Similarity=0.125  Sum_probs=66.8

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  162 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~  162 (266)
                      +......+....+.|+.++|...|..|+.+.|..+.                 ++..+|...-.-++.-+|-.+|-+||.
T Consensus       116 A~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~-----------------~L~e~G~f~E~~~~iv~ADq~Y~~ALt  178 (472)
T KOG3824|consen  116 AILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQ-----------------ILIEMGQFREMHNEIVEADQCYVKALT  178 (472)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHH-----------------HHHHHhHHHHhhhhhHhhhhhhheeee
Confidence            333445566778899999999999999999999766                 588888888888889999999999999


Q ss_pred             CCCCchHHHHHHHHHH
Q 024531          163 EDENNVKALFRRGKAR  178 (266)
Q Consensus       163 l~p~~~~a~~~~g~~~  178 (266)
                      ++|.|.+|+.+++...
T Consensus       179 isP~nseALvnR~RT~  194 (472)
T KOG3824|consen  179 ISPGNSEALVNRARTT  194 (472)
T ss_pred             eCCCchHHHhhhhccc
Confidence            9999999999887543

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.26  E-value=0.085  Score=47.53  Aligned_cols=27  Identities=11%  Similarity=0.076  Sum_probs=19.5

Q ss_pred             HHHhhccHHHHHHHHHHHHhhhccchh
Q 024531           92 ALFKEEKLEEAMQQYEMAIAYMGDDFM  118 (266)
Q Consensus        92 ~~~~~g~~~~A~~~y~~al~~~~~~~~  118 (266)
                      ...+..+.+.-++.-.+||+++|+...
T Consensus       177 ~AWRERnp~aRIkaA~eALei~pdCAd  203 (539)
T PF04184_consen  177 KAWRERNPQARIKAAKEALEINPDCAD  203 (539)
T ss_pred             HHHhcCCHHHHHHHHHHHHHhhhhhhH
Confidence            345567778888888888888887644

The molecular function of this protein is uncertain.

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=96.19  E-value=0.2  Score=50.29  Aligned_cols=115  Identities=12%  Similarity=0.083  Sum_probs=92.2

Q ss_pred             hhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCC--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024531          135 PCHLNMAACLLKLKRYEEAIGQCSLVLGEDEN--NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLA  212 (266)
Q Consensus       135 ~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~--~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  212 (266)
                      .++...|..+++.++-+.|-..+.+||.--|.  +.+..-.-|+.-++.|+-+.+...|+-.+.-+|.-.+.+.-+..-.
T Consensus      1565 ~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~e 1644 (1710)
T KOG1070|consen 1565 KVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDME 1644 (1710)
T ss_pred             hHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHH
Confidence            36778889999999999999999999999887  7788888899999999999999999999999999888887666543


Q ss_pred             HHHHHHHHHHHHHHhcccCCCCCCcccchhHHHhHHHH
Q 024531          213 EHEKAVYKKQKEIYKGIFGPRPEPKQKKNWLIIFWQLL  250 (266)
Q Consensus       213 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~  250 (266)
                      .... ..+..+.+|+++....-.....+.+++.|+.|=
T Consensus      1645 ik~~-~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyE 1681 (1710)
T KOG1070|consen 1645 IKHG-DIKYVRDLFERVIELKLSIKKMKFFFKKWLEYE 1681 (1710)
T ss_pred             HccC-CHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHH
Confidence            2222 235667788998887777777777777766653

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=96.05  E-value=0.11  Score=45.11  Aligned_cols=118  Identities=18%  Similarity=0.129  Sum_probs=82.1

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHh-hhccchhh----hh------------chhHHHHHHHhhhhhhhhHHHHHH
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIA-YMGDDFMF----QL------------FGKYRDMALAVKNPCHLNMAACLL  145 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~-~~~~~~~~----~~------------~~~~~~~~~~l~~~~~~n~a~~~~  145 (266)
                      .....+.+..+...|+..+|+......+. ........    ..            ..............++.-+|.-..
T Consensus       184 ~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~  263 (352)
T PF02259_consen  184 PRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLD  263 (352)
T ss_pred             cchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHH
Confidence            34455667777778888888888888777 22221000    00            001122334555677888888887


Q ss_pred             Hh------hCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCH-----------------HHHHHHHHHHHhhCCC
Q 024531          146 KL------KRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQT-----------------DAAREDFLKAGKFAPE  200 (266)
Q Consensus       146 ~~------~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~-----------------~~A~~~~~~al~l~p~  200 (266)
                      ..      +..+.++..|..++.++|.+.++++..|..+..+-+.                 ..|+..|-+++.+.|+
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  264 ELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             hhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence            77      7899999999999999999999999999888765333                 3478888888888877

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.04  E-value=0.13  Score=42.34  Aligned_cols=97  Identities=15%  Similarity=0.090  Sum_probs=63.4

Q ss_pred             HHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh----cCC--
Q 024531           91 NALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL----GED--  164 (266)
Q Consensus        91 ~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al----~l~--  164 (266)
                      .....+-+.++|+..|++++.....+..           ......++...+..+.+++.|.+|-..+.+-.    ..+  
T Consensus       118 ak~lenv~Pd~AlqlYqralavve~~dr-----------~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y  186 (308)
T KOG1585|consen  118 AKALENVKPDDALQLYQRALAVVEEDDR-----------DQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAY  186 (308)
T ss_pred             HHHhhcCCHHHHHHHHHHHHHHHhccch-----------HHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhc
Confidence            3334445566677777777666544322           12234467788899999999998877765532    222  


Q ss_pred             CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024531          165 ENNVKALFRRGKARAELGQTDAAREDFLKAGKFA  198 (266)
Q Consensus       165 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~  198 (266)
                      |.--+++...-.+|....+|..|..+|+..-++.
T Consensus       187 ~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip  220 (308)
T KOG1585|consen  187 NSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP  220 (308)
T ss_pred             ccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence            3334556566667777789999999999987764

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.03  E-value=0.11  Score=46.73  Aligned_cols=107  Identities=22%  Similarity=0.149  Sum_probs=76.1

Q ss_pred             cHHHHHHHHHHHHhhhccchhh----hhchhHHHHH----HHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCC--c
Q 024531           98 KLEEAMQQYEMAIAYMGDDFMF----QLFGKYRDMA----LAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDEN--N  167 (266)
Q Consensus        98 ~~~~A~~~y~~al~~~~~~~~~----~~~~~~~~~~----~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~--~  167 (266)
                      -..+|.+.|+++++........    +..+...+..    .....-+-..+|.|..++|+.++|++.++..++..|.  +
T Consensus       215 Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~  294 (539)
T PF04184_consen  215 TIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDN  294 (539)
T ss_pred             CHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccch
Confidence            3788999999999876543221    1111111111    1122334567999999999999999999999988775  5


Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHH
Q 024531          168 VKALFRRGKARAELGQTDAAREDFLKAGKF-APEDKSI  204 (266)
Q Consensus       168 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~l-~p~~~~~  204 (266)
                      ...++++-.++..++.|.++...+.+.=.+ -|....+
T Consensus       295 l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti  332 (539)
T PF04184_consen  295 LNIRENLIEALLELQAYADVQALLAKYDDISLPKSATI  332 (539)
T ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHH
Confidence            678999999999999999999999886443 2444433

The molecular function of this protein is uncertain.

>PRK10941 hypothetical protein; Provisional

Probab=96.03  E-value=0.067  Score=45.04  Aligned_cols=79  Identities=14%  Similarity=0.091  Sum_probs=67.5

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  162 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~  162 (266)
                      ...+.+.=..+.+.+++..|+..-+..+.+.|+++.                 -+.-+|.+|.++|.+..|..+++.-++
T Consensus       181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~-----------------e~RDRGll~~qL~c~~~A~~DL~~fl~  243 (269)
T PRK10941        181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPY-----------------EIRDRGLIYAQLDCEHVALSDLSYFVE  243 (269)
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            344556677889999999999999999999999865                 377899999999999999999999999


Q ss_pred             CCCCchHHHHHHHHHH
Q 024531          163 EDENNVKALFRRGKAR  178 (266)
Q Consensus       163 l~p~~~~a~~~~g~~~  178 (266)
                      ..|+++.+-.-+.++.
T Consensus       244 ~~P~dp~a~~ik~ql~  259 (269)
T PRK10941        244 QCPEDPISEMIRAQIH  259 (269)
T ss_pred             hCCCchhHHHHHHHHH
Confidence            9999988776554443

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.97  E-value=0.03  Score=50.14  Aligned_cols=120  Identities=12%  Similarity=0.028  Sum_probs=86.9

Q ss_pred             HHHHHhHHHHhhccHHHHHHHHHHHH-hhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc-
Q 024531           85 RRKMDGNALFKEEKLEEAMQQYEMAI-AYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG-  162 (266)
Q Consensus        85 ~~~~~g~~~~~~g~~~~A~~~y~~al-~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~-  162 (266)
                      .+.-..+..|..|+|..|.+.+...- ...|....   +++   .   ...-..+|+|.++++++.|.-+..+|.+||. 
T Consensus       242 ~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~---T~q---~---~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N  312 (696)
T KOG2471|consen  242 ALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTI---TPQ---L---SSCIFNNNLGCIHYQLGCYQASSVLFLKALRN  312 (696)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHhcccccccCccc---cch---h---hhheeecCcceEeeehhhHHHHHHHHHHHHHH
Confidence            34455677788888888888765431 11111000   000   0   0111357999999999999999999999995 


Q ss_pred             --------CCC---------CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024531          163 --------EDE---------NNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAE  213 (266)
Q Consensus       163 --------l~p---------~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  213 (266)
                              +.|         .....+|+.|..|...|+.-.|.+||.++...-..||..+--|+.|-.
T Consensus       313 ~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCi  380 (696)
T KOG2471|consen  313 SCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCI  380 (696)
T ss_pred             HHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence                    122         245789999999999999999999999999999999999988888743

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.89  E-value=0.18  Score=41.22  Aligned_cols=98  Identities=20%  Similarity=0.219  Sum_probs=66.3

Q ss_pred             HhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHh-hCHHHHHHHHHhHhcCCCC------
Q 024531           94 FKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKL-KRYEEAIGQCSLVLGEDEN------  166 (266)
Q Consensus        94 ~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~-~~~~~A~~~~~~al~l~p~------  166 (266)
                      |+..+..+|+..++++|++..+...+.           +-..-+..+|..|-.- .++++|+.+|+++-+....      
T Consensus        84 ykk~~~~eAv~cL~~aieIyt~~Grf~-----------~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ss  152 (288)
T KOG1586|consen   84 YKKVDPEEAVNCLEKAIEIYTDMGRFT-----------MAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSS  152 (288)
T ss_pred             hhccChHHHHHHHHHHHHHHHhhhHHH-----------HHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhh
Confidence            444566666666666666654432211           1122345667776554 7899999999988654322      


Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 024531          167 NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK  202 (266)
Q Consensus       167 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~  202 (266)
                      --+++...+.--..+++|.+|+..|+++....-+|.
T Consensus       153 ANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~  188 (288)
T KOG1586|consen  153 ANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN  188 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            246777788888899999999999999988776664

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=95.85  E-value=0.54  Score=42.37  Aligned_cols=131  Identities=15%  Similarity=0.181  Sum_probs=102.0

Q ss_pred             hHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchH
Q 024531           90 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVK  169 (266)
Q Consensus        90 g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~  169 (266)
                      |.---.+++++.|-..|.+||..+...                 +++....+.+-++.+....|...+++|+.+=|.-.+
T Consensus        80 aqwEesq~e~~RARSv~ERALdvd~r~-----------------itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq  142 (677)
T KOG1915|consen   80 AQWEESQKEIQRARSVFERALDVDYRN-----------------ITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ  142 (677)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHhccccc-----------------chHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH
Confidence            333345678899999999999987653                 347888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcccchh
Q 024531          170 ALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKKNW  242 (266)
Q Consensus       170 a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~  242 (266)
                      .||.....-..+|+...|...|++=++..|+.......+. ...+.++. +..+..|.+.+-..|+.   ++|
T Consensus       143 lWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~-fElRykei-eraR~IYerfV~~HP~v---~~w  210 (677)
T KOG1915|consen  143 LWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIK-FELRYKEI-ERARSIYERFVLVHPKV---SNW  210 (677)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHH-HHHHhhHH-HHHHHHHHHHheecccH---HHH
Confidence            9999999999999999999999999999999665544333 33334443 34556677776555443   466

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=95.66  E-value=0.16  Score=35.18  Aligned_cols=49  Identities=29%  Similarity=0.351  Sum_probs=40.8

Q ss_pred             HHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCc
Q 024531          102 AMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN  167 (266)
Q Consensus       102 A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~  167 (266)
                      .+..+.+.+..+|++..                 +.+.+|..++..|++++|++.+-.++..++++
T Consensus         7 ~~~al~~~~a~~P~D~~-----------------ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~   55 (90)
T PF14561_consen    7 DIAALEAALAANPDDLD-----------------ARYALADALLAAGDYEEALDQLLELVRRDRDY   55 (90)
T ss_dssp             HHHHHHHHHHHSTT-HH-----------------HHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred             cHHHHHHHHHcCCCCHH-----------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            45668888999999776                 68999999999999999999999999999876

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.64  E-value=0.032  Score=32.00  Aligned_cols=29  Identities=24%  Similarity=0.123  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024531          169 KALFRRGKARAELGQTDAAREDFLKAGKF  197 (266)
Q Consensus       169 ~a~~~~g~~~~~~g~~~~A~~~~~~al~l  197 (266)
                      .++.++|.+|..+|++++|+..+++++.+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            45677888888888888888888887765

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.43  E-value=0.011  Score=52.75  Aligned_cols=94  Identities=11%  Similarity=-0.087  Sum_probs=70.1

Q ss_pred             HHHhHHHHhhccHHHHHHHHHHHHh-hhccchhhhhch-hHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCC
Q 024531           87 KMDGNALFKEEKLEEAMQQYEMAIA-YMGDDFMFQLFG-KYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED  164 (266)
Q Consensus        87 ~~~g~~~~~~g~~~~A~~~y~~al~-~~~~~~~~~~~~-~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~  164 (266)
                      .++|-++|+.|.|.-++..|.+|++ .+..- .....+ .-.-..+.-...+++|.|..|+..|+.-.|..++.++....
T Consensus       287 NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL-~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vf  365 (696)
T KOG2471|consen  287 NNLGCIHYQLGCYQASSVLFLKALRNSCSQL-RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVF  365 (696)
T ss_pred             cCcceEeeehhhHHHHHHHHHHHHHHHHHHH-hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHH
Confidence            5678889999999999999999996 22110 000000 00011122234578999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHHHc
Q 024531          165 ENNVKALFRRGKARAEL  181 (266)
Q Consensus       165 p~~~~a~~~~g~~~~~~  181 (266)
                      -.++..|.|++.|.+.-
T Consensus       366 h~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  366 HRNPRLWLRLAECCIMA  382 (696)
T ss_pred             hcCcHHHHHHHHHHHHH
Confidence            99999999999998753

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=95.29  E-value=0.097  Score=44.02  Aligned_cols=67  Identities=16%  Similarity=-0.008  Sum_probs=48.9

Q ss_pred             HHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024531          128 MALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKA  194 (266)
Q Consensus       128 ~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a  194 (266)
                      -+..+...++...|..|...|.+.+|+..+++++.+||-+...+.-+-.++..+|+--.|.+.|++.
T Consensus       273 rle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery  339 (361)
T COG3947         273 RLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY  339 (361)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence            3445555566666777888888888888888888888888777777777788888776666666543

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=95.22  E-value=0.27  Score=37.83  Aligned_cols=81  Identities=14%  Similarity=-0.056  Sum_probs=71.2

Q ss_pred             hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 024531          136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE  215 (266)
Q Consensus       136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  215 (266)
                      .+..+..+-...++.+++...+.-.--+.|..+..-..-|..+...|+|.+|+..|+.+..-.|..+-+...+..|...+
T Consensus        12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~   91 (160)
T PF09613_consen   12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL   91 (160)
T ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence            45566677777889999999999888999999999999999999999999999999999999999998888888886444


Q ss_pred             H
Q 024531          216 K  216 (266)
Q Consensus       216 ~  216 (266)
                      +
T Consensus        92 ~   92 (160)
T PF09613_consen   92 G   92 (160)
T ss_pred             C
Confidence            3

>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]

Probab=95.21  E-value=0.017  Score=44.77  Aligned_cols=38  Identities=18%  Similarity=0.318  Sum_probs=35.3

Q ss_pred             ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCC
Q 024531            2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEG   40 (266)
Q Consensus         2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g   40 (266)
                      ++|.+ .+++|||.||.-|..|+...|.|.|..+||..-
T Consensus        36 i~G~g-~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~   73 (174)
T COG1047          36 IVGAG-QLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYD   73 (174)
T ss_pred             EecCC-CcchhHHHHHhCCCCCceeEEEeCchHhcCCCC
Confidence            58988 899999999999999999999999999999754

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.20  E-value=0.043  Score=31.34  Aligned_cols=30  Identities=23%  Similarity=0.134  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024531          169 KALFRRGKARAELGQTDAAREDFLKAGKFA  198 (266)
Q Consensus       169 ~a~~~~g~~~~~~g~~~~A~~~~~~al~l~  198 (266)
                      .+|..+|.+-...++|++|+.+|++++++-
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            467889999999999999999999998763

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=95.16  E-value=1.2  Score=38.54  Aligned_cols=120  Identities=18%  Similarity=0.088  Sum_probs=89.5

Q ss_pred             HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhH
Q 024531           81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  160 (266)
Q Consensus        81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~a  160 (266)
                      ..+..+...+....+.|.++.|...+.++....+.....             ...+....|..+...|+..+|+..++..
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~-------------~~~v~~e~akllw~~g~~~~Ai~~L~~~  210 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL-------------LPRVFLEYAKLLWAQGEQEEAIQKLREL  210 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC-------------CcchHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            445667788889999999999999999988866332110             1124666788888888888888888777


Q ss_pred             hcC--C-C-------------------------------CchHHHHHHHHHHHHc------CCHHHHHHHHHHHHhhCCC
Q 024531          161 LGE--D-E-------------------------------NNVKALFRRGKARAEL------GQTDAAREDFLKAGKFAPE  200 (266)
Q Consensus       161 l~l--~-p-------------------------------~~~~a~~~~g~~~~~~------g~~~~A~~~~~~al~l~p~  200 (266)
                      +.-  . +                               ...++++.+|.-...+      +.++++...|..+..++|+
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  290 (352)
T PF02259_consen  211 LKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS  290 (352)
T ss_pred             HHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh
Confidence            661  0 0                               1245777788877777      8999999999999999999


Q ss_pred             CHHHHHHHHHHHH
Q 024531          201 DKSIARELRLLAE  213 (266)
Q Consensus       201 ~~~~~~~l~~l~~  213 (266)
                      ...+...++....
T Consensus       291 ~~k~~~~~a~~~~  303 (352)
T PF02259_consen  291 WEKAWHSWALFND  303 (352)
T ss_pred             HHHHHHHHHHHHH
Confidence            8888777776543

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=95.15  E-value=0.32  Score=41.23  Aligned_cols=106  Identities=13%  Similarity=0.105  Sum_probs=78.0

Q ss_pred             hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024531          136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAE-LGQTDAAREDFLKAGKFAPEDKSIARELRLLAEH  214 (266)
Q Consensus       136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~-~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  214 (266)
                      +|..+.....+.+..+.|...|.+|++..+.....|...|..-+. .++.+.|...|+.+++.-|.+...+.........
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~   82 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK   82 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            455666677777779999999999997777788889999999667 5666669999999999999998887766665555


Q ss_pred             HHHHHHHHHHHHhcccCCCCCCc-ccchh
Q 024531          215 EKAVYKKQKEIYKGIFGPRPEPK-QKKNW  242 (266)
Q Consensus       215 ~~~~~~~~~~~~~k~~~~~~~~~-~~~~~  242 (266)
                      .+. ....+.+|.+.+...+... ....|
T Consensus        83 ~~d-~~~aR~lfer~i~~l~~~~~~~~iw  110 (280)
T PF05843_consen   83 LND-INNARALFERAISSLPKEKQSKKIW  110 (280)
T ss_dssp             TT--HHHHHHHHHHHCCTSSCHHHCHHHH
T ss_pred             hCc-HHHHHHHHHHHHHhcCchhHHHHHH
Confidence            544 4566788999887755444 33444

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=95.13  E-value=0.085  Score=29.71  Aligned_cols=33  Identities=12%  Similarity=0.019  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHH--HHHHHhhCCCC
Q 024531          169 KALFRRGKARAELGQTDAARED--FLKAGKFAPED  201 (266)
Q Consensus       169 ~a~~~~g~~~~~~g~~~~A~~~--~~~al~l~p~~  201 (266)
                      +.++.+|-.+...|+|++|+..  |.-+..++|.|
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            5677889999999999999999  44888888765

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=95.04  E-value=0.34  Score=40.62  Aligned_cols=62  Identities=13%  Similarity=-0.056  Sum_probs=52.2

Q ss_pred             HHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024531          153 AIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEH  214 (266)
Q Consensus       153 A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  214 (266)
                      |..+|.+|+.+.|.+...|..+|.++...|+.-.|+=+|-+++....-.+.+..+|..+-..
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999998765568888888877544

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.00  E-value=0.029  Score=32.17  Aligned_cols=28  Identities=29%  Similarity=0.222  Sum_probs=25.1

Q ss_pred             hhhhHHHHHHHhhCHHHHHHHHHhHhcC
Q 024531          136 CHLNMAACLLKLKRYEEAIGQCSLVLGE  163 (266)
Q Consensus       136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l  163 (266)
                      ++.|+|.+|...|++++|+..+.+++.+
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            6889999999999999999999999865

>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=94.87  E-value=0.025  Score=45.10  Aligned_cols=38  Identities=21%  Similarity=0.372  Sum_probs=34.9

Q ss_pred             ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCC
Q 024531            2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEG   40 (266)
Q Consensus         2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g   40 (266)
                      ++|.+ ++++|||.+|.-|..|+...|+|.|.-+||..-
T Consensus        35 ~~G~g-~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d   72 (196)
T PRK10737         35 LHGHG-SLISGLETALEGHEVGDKFDVAVGANDAYGQYD   72 (196)
T ss_pred             EeCCC-cchHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence            57887 899999999999999999999999999998754

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=94.79  E-value=0.6  Score=46.07  Aligned_cols=107  Identities=14%  Similarity=0.144  Sum_probs=79.5

Q ss_pred             HhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHh-------hCHHHHHHHHHhHh
Q 024531           89 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKL-------KRYEEAIGQCSLVL  161 (266)
Q Consensus        89 ~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~-------~~~~~A~~~~~~al  161 (266)
                      ..+.+.....|+.|+..|.+.-...|.-..              -..+.+-.|.+.+..       ..+++|+.-|.+.-
T Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  546 (932)
T PRK13184        481 VPDAFLAEKLYDQALIFYRRIRESFPGRKE--------------GYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH  546 (932)
T ss_pred             CcHHHHhhHHHHHHHHHHHHHhhcCCCccc--------------chHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc
Confidence            356778888999999999999998887432              122455555555442       25788888887653


Q ss_pred             cCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024531          162 GEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRL  210 (266)
Q Consensus       162 ~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~  210 (266)
                       -.|.-+--|.-.|.+|..+|+|++-+++|..|++.-|++|++-..-..
T Consensus       547 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  594 (932)
T PRK13184        547 -GGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDH  594 (932)
T ss_pred             -CCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHH
Confidence             345566678889999999999999999999999999998765544333

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.79  E-value=2  Score=35.56  Aligned_cols=131  Identities=11%  Similarity=0.002  Sum_probs=80.5

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  162 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~  162 (266)
                      +..+..-++.+-...+|++|...+.+|++...++...           --..++|-..+.....+..|.++...+++|..
T Consensus        31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrsl-----------fhAAKayEqaamLake~~klsEvvdl~eKAs~   99 (308)
T KOG1585|consen   31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSL-----------FHAAKAYEQAAMLAKELSKLSEVVDLYEKASE   99 (308)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccH-----------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            3344444555556688999999999988665432110           00233566677777788899999999999986


Q ss_pred             C-----CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HH---HHHHHHHHHHHHHHHHHHHH
Q 024531          163 E-----DENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK---SI---ARELRLLAEHEKAVYKKQKE  224 (266)
Q Consensus       163 l-----~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~---~~---~~~l~~l~~~~~~~~~~~~~  224 (266)
                      +     .|+-.-.-...+-=....-+.++|+..|++++.+-.++.   .+   .....++.-+.++..++...
T Consensus       100 lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a  172 (308)
T KOG1585|consen  100 LYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATA  172 (308)
T ss_pred             HHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHH
Confidence            6     333333333333334467789999999999998754432   22   22333344455555554443

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.77  E-value=1.3  Score=39.99  Aligned_cols=99  Identities=17%  Similarity=0.130  Sum_probs=74.4

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  162 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~  162 (266)
                      +..+.-+|......|.|+.|..+|..|.+....              .++...+-.|+|..|++.++-+.-.+..+   .
T Consensus       367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~--------------~dl~a~~nlnlAi~YL~~~~~ed~y~~ld---~  429 (629)
T KOG2300|consen  367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTES--------------IDLQAFCNLNLAISYLRIGDAEDLYKALD---L  429 (629)
T ss_pred             HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH--------------HHHHHHHHHhHHHHHHHhccHHHHHHHHH---h
Confidence            444555677777788899999999999987654              34466678899999999887554333332   2


Q ss_pred             CCCCc----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024531          163 EDENN----------VKALFRRGKARAELGQTDAAREDFLKAGKFA  198 (266)
Q Consensus       163 l~p~~----------~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~  198 (266)
                      +.|.|          ..++|-.|.-.+.++++.+|...+.+.+...
T Consensus       430 i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma  475 (629)
T KOG2300|consen  430 IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA  475 (629)
T ss_pred             cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence            33432          3578888999999999999999999999987

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=94.62  E-value=0.19  Score=37.36  Aligned_cols=71  Identities=21%  Similarity=0.252  Sum_probs=51.2

Q ss_pred             HHHhHHHHhh---ccHHHHHHHHHHHHh-hhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531           87 KMDGNALFKE---EKLEEAMQQYEMAIA-YMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  162 (266)
Q Consensus        87 ~~~g~~~~~~---g~~~~A~~~y~~al~-~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~  162 (266)
                      .+.+-.+...   .+.++-+..+...+. -.|..                ...+.+.+|..+.++++|+.++.+++..|+
T Consensus        36 f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~----------------rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~   99 (149)
T KOG3364|consen   36 FNLAWALVRSRDTEDVQEGIVILEDLLKSAHPER----------------RRECLYYLAVGHYRLKEYSKSLRYVDALLE   99 (149)
T ss_pred             HHHHHHHHcccchHHHHHhHHHHHHHhhhcCccc----------------chhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence            3444444443   346667777777775 22322                223678899999999999999999999999


Q ss_pred             CCCCchHHHHH
Q 024531          163 EDENNVKALFR  173 (266)
Q Consensus       163 l~p~~~~a~~~  173 (266)
                      .+|+|..+.-.
T Consensus       100 ~e~~n~Qa~~L  110 (149)
T KOG3364|consen  100 TEPNNRQALEL  110 (149)
T ss_pred             hCCCcHHHHHH
Confidence            99999877643

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=94.45  E-value=0.2  Score=34.88  Aligned_cols=58  Identities=19%  Similarity=0.206  Sum_probs=46.5

Q ss_pred             HHHHhhCHHHHHHHHHhHhcCCCC---------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 024531          143 CLLKLKRYEEAIGQCSLVLGEDEN---------NVKALFRRGKARAELGQTDAAREDFLKAGKFAPE  200 (266)
Q Consensus       143 ~~~~~~~~~~A~~~~~~al~l~p~---------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~  200 (266)
                      ...+.++|..|++.+.+.+.....         ...+..++|.++...|++++|+..++.++.+...
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are   73 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE   73 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            345788999998888777644221         2467889999999999999999999999998654

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=94.28  E-value=0.17  Score=35.29  Aligned_cols=66  Identities=15%  Similarity=0.108  Sum_probs=49.4

Q ss_pred             HHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCC
Q 024531           92 ALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDE  165 (266)
Q Consensus        92 ~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p  165 (266)
                      ...+.|+|..|++.+.+..+..........        ......+..++|..+...|++++|+..+++++.+..
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~--------~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSS--------NSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchh--------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            346789999999999999987654322100        111233678899999999999999999999997743

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=94.27  E-value=0.62  Score=44.88  Aligned_cols=89  Identities=13%  Similarity=0.115  Sum_probs=76.3

Q ss_pred             HhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 024531          146 KLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEI  225 (266)
Q Consensus       146 ~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~  225 (266)
                      ..+++.+|+..+.+.++..|+..-|.--.|.++.++|.+++|..+++-.-.+-+++...+..+..|+..+++..+.-. .
T Consensus        21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~-~   99 (932)
T KOG2053|consen   21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH-L   99 (932)
T ss_pred             hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH-H
Confidence            356799999999999999999999999999999999999999988887777888899999999999988888765554 4


Q ss_pred             HhcccCCCCC
Q 024531          226 YKGIFGPRPE  235 (266)
Q Consensus       226 ~~k~~~~~~~  235 (266)
                      |.++....|.
T Consensus       100 Ye~~~~~~P~  109 (932)
T KOG2053|consen  100 YERANQKYPS  109 (932)
T ss_pred             HHHHHhhCCc
Confidence            7777665554

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=94.18  E-value=0.083  Score=42.95  Aligned_cols=59  Identities=17%  Similarity=0.164  Sum_probs=53.0

Q ss_pred             HHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCc
Q 024531           92 ALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN  167 (266)
Q Consensus        92 ~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~  167 (266)
                      ...+.++...|.+.|.+++.+.|....                 -+..+|....+.|+++.|...|.+.+++||.+
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~-----------------gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAA-----------------GWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhh-----------------hhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            456789999999999999999998654                 47788999999999999999999999999976

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=93.99  E-value=3.2  Score=35.11  Aligned_cols=103  Identities=17%  Similarity=0.094  Sum_probs=73.2

Q ss_pred             HHhhccHHHHHHHHHHHHhhhc-cchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhh-CHHHHHHHHHhHhcC----CC-
Q 024531           93 LFKEEKLEEAMQQYEMAIAYMG-DDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK-RYEEAIGQCSLVLGE----DE-  165 (266)
Q Consensus        93 ~~~~g~~~~A~~~y~~al~~~~-~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~-~~~~A~~~~~~al~l----~p-  165 (266)
                      ....|+++.|...|.++-...+ .++..          .......++|.|......+ +++.|+..+++++++    .+ 
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~----------~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~   72 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDM----------AEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKM   72 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHH----------HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhc
Confidence            3568999999999999987663 22211          1224456899999999999 999999999988876    22 


Q ss_pred             --C-------chHHHHHHHHHHHHcCCHHHH---HHHHHHHHhhCCCCHHHH
Q 024531          166 --N-------NVKALFRRGKARAELGQTDAA---REDFLKAGKFAPEDKSIA  205 (266)
Q Consensus       166 --~-------~~~a~~~~g~~~~~~g~~~~A---~~~~~~al~l~p~~~~~~  205 (266)
                        .       ....+..++.+|...+.++..   ...++.+-.-.|+.+.+.
T Consensus        73 ~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~  124 (278)
T PF08631_consen   73 DKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVF  124 (278)
T ss_pred             cccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence              1       134677789999998887544   444445555567766666

It is also involved in sporulation [].

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=93.93  E-value=1.5  Score=38.67  Aligned_cols=106  Identities=17%  Similarity=-0.005  Sum_probs=72.1

Q ss_pred             HHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHH
Q 024531           92 ALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKAL  171 (266)
Q Consensus        92 ~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~  171 (266)
                      .....|+|+.|++..+......--..         +..+.....++...+..... -+...|..+...++++.|+...+-
T Consensus       197 ~r~~~gdWd~AlkLvd~~~~~~vie~---------~~aeR~rAvLLtAkA~s~ld-adp~~Ar~~A~~a~KL~pdlvPaa  266 (531)
T COG3898         197 ARCAAGDWDGALKLVDAQRAAKVIEK---------DVAERSRAVLLTAKAMSLLD-ADPASARDDALEANKLAPDLVPAA  266 (531)
T ss_pred             HHHhcCChHHHHHHHHHHHHHHhhch---------hhHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHhhcCCccchHH
Confidence            34556777777776665544321100         00111222334444444332 358889999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 024531          172 FRRGKARAELGQTDAAREDFLKAGKFAPEDKSIAREL  208 (266)
Q Consensus       172 ~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l  208 (266)
                      ..-+.+++..|+..++-..++.+.+.+|+ +++...+
T Consensus       267 v~AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia~lY  302 (531)
T COG3898         267 VVAARALFRDGNLRKGSKILETAWKAEPH-PDIALLY  302 (531)
T ss_pred             HHHHHHHHhccchhhhhhHHHHHHhcCCC-hHHHHHH
Confidence            99999999999999999999999999997 4443333

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.63  E-value=1.3  Score=41.38  Aligned_cols=91  Identities=16%  Similarity=0.114  Sum_probs=72.7

Q ss_pred             HHHhHHHHhhc-----cHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhh---CHHHHHHHHH
Q 024531           87 KMDGNALFKEE-----KLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK---RYEEAIGQCS  158 (266)
Q Consensus        87 ~~~g~~~~~~g-----~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~---~~~~A~~~~~  158 (266)
                      ...|..+.+..     ++..|+..|.++-.....+                   +.+++|.+|..-.   +...|..+|.
T Consensus       292 ~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~-------------------a~~~lg~~~~~g~~~~d~~~A~~yy~  352 (552)
T KOG1550|consen  292 YGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPD-------------------AQYLLGVLYETGTKERDYRRAFEYYS  352 (552)
T ss_pred             cHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCch-------------------HHHHHHHHHHcCCccccHHHHHHHHH
Confidence            35677777643     7888999999998876554                   5778888888766   5789999999


Q ss_pred             hHhcCCCCchHHHHHHHHHHHHc----CCHHHHHHHHHHHHhhC
Q 024531          159 LVLGEDENNVKALFRRGKARAEL----GQTDAAREDFLKAGKFA  198 (266)
Q Consensus       159 ~al~l~p~~~~a~~~~g~~~~~~----g~~~~A~~~~~~al~l~  198 (266)
                      .|...  .++.|.+++|.||..-    -+...|..+|.++-+.+
T Consensus       353 ~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g  394 (552)
T KOG1550|consen  353 LAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG  394 (552)
T ss_pred             HHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence            98765  6789999999998643    47799999999999887

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=93.44  E-value=0.13  Score=26.43  Aligned_cols=24  Identities=21%  Similarity=0.196  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHH
Q 024531          169 KALFRRGKARAELGQTDAAREDFL  192 (266)
Q Consensus       169 ~a~~~~g~~~~~~g~~~~A~~~~~  192 (266)
                      .+++.+|.++..+|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            356667777777777777776654

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=93.38  E-value=1.9  Score=36.54  Aligned_cols=89  Identities=17%  Similarity=0.081  Sum_probs=67.5

Q ss_pred             hhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHH------------------------
Q 024531          138 LNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLK------------------------  193 (266)
Q Consensus       138 ~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~------------------------  193 (266)
                      ...+.-....|++.+|...+..++..+|.+..+...++.||...|+.+.|...+..                        
T Consensus       138 ~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa  217 (304)
T COG3118         138 LAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAA  217 (304)
T ss_pred             HHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHh
Confidence            34566777889999999999999999999999999999999999999777655543                        


Q ss_pred             ----------HHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024531          194 ----------AGKFAPEDKSIARELRLLAEHEKAVYKKQKEIY  226 (266)
Q Consensus       194 ----------al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~  226 (266)
                                .+..+|+|.++...++......++.+++...++
T Consensus       218 ~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll  260 (304)
T COG3118         218 ATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLL  260 (304)
T ss_pred             cCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence                      222357777777777766655566655555543

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.29  E-value=0.62  Score=43.41  Aligned_cols=85  Identities=19%  Similarity=0.070  Sum_probs=69.5

Q ss_pred             hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCc------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024531          136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENN------VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELR  209 (266)
Q Consensus       136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~------~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~  209 (266)
                      ++-|-|.-+++..+|..++..|..-+..-|.+      .+....++.||..+.+.|.|.+.++.|-+.+|.++-....+-
T Consensus       356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~  435 (872)
T KOG4814|consen  356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML  435 (872)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence            56688999999999999999999998776654      678888999999999999999999999999999987766665


Q ss_pred             HHHHHHHHHHH
Q 024531          210 LLAEHEKAVYK  220 (266)
Q Consensus       210 ~l~~~~~~~~~  220 (266)
                      ..-......++
T Consensus       436 ~~~~~E~~Se~  446 (872)
T KOG4814|consen  436 QSFLAEDKSEE  446 (872)
T ss_pred             HHHHHhcchHH
Confidence            54333333333

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=93.09  E-value=2.2  Score=39.42  Aligned_cols=106  Identities=16%  Similarity=0.021  Sum_probs=78.7

Q ss_pred             HhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHH-HHHhHhcCCCCc
Q 024531           89 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIG-QCSLVLGEDENN  167 (266)
Q Consensus        89 ~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~-~~~~al~l~p~~  167 (266)
                      +.......++...|.-....++..+|....                 ++.|++.+....|....++. .+..+....|++
T Consensus        73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------------~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~  135 (620)
T COG3914          73 LSILLAPLADSTLAFLAKRIPLSVNPENCP-----------------AVQNLAAALELDGLQFLALADISEIAEWLSPDN  135 (620)
T ss_pred             HHhhccccccchhHHHHHhhhHhcCcccch-----------------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcch
Confidence            344445556666777777777777777444                 68899888888776555444 455588999998


Q ss_pred             hHHHHHH------HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024531          168 VKALFRR------GKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL  211 (266)
Q Consensus       168 ~~a~~~~------g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l  211 (266)
                      ......+      +.....+++..++...+.++..+.|.++.+...+...
T Consensus       136 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~  185 (620)
T COG3914         136 AEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA  185 (620)
T ss_pred             HHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence            8776666      8888888888999999999999999998777666654

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=92.81  E-value=0.78  Score=40.45  Aligned_cols=97  Identities=18%  Similarity=0.124  Sum_probs=74.8

Q ss_pred             HHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCC
Q 024531           85 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED  164 (266)
Q Consensus        85 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~  164 (266)
                      .+.+.|..|...|+++.|++.|.++-+.+.....              .+..+.|.-.+-+-+|+|.....+-.+|...-
T Consensus       152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~kh--------------vInm~ln~i~VSI~~~nw~hv~sy~~~A~st~  217 (466)
T KOG0686|consen  152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKH--------------VINMCLNLILVSIYMGNWGHVLSYISKAESTP  217 (466)
T ss_pred             HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHH--------------HHHHHHHHHHHHHhhcchhhhhhHHHHHHhCc
Confidence            4567899999999999999999998887765322              23346677777777899988888888876541


Q ss_pred             ----C----CchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024531          165 ----E----NNVKALFRRGKARAELGQTDAAREDFLKAG  195 (266)
Q Consensus       165 ----p----~~~~a~~~~g~~~~~~g~~~~A~~~~~~al  195 (266)
                          .    -.++..+..|.++..++.|..|.++|-.+-
T Consensus       218 ~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~  256 (466)
T KOG0686|consen  218 DANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE  256 (466)
T ss_pred             hhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence                0    124677788999999999999999987654

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=92.69  E-value=1.8  Score=38.19  Aligned_cols=98  Identities=18%  Similarity=0.182  Sum_probs=70.4

Q ss_pred             hHHHHHHHhhCHHHHHHHHHh---HhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 024531          139 NMAACLLKLKRYEEAIGQCSL---VLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE  215 (266)
Q Consensus       139 n~a~~~~~~~~~~~A~~~~~~---al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  215 (266)
                      .++..|....--+-+++-+++   .-.+.|+|....+..+.+-..-|+|..|...-+.+...+|.. .+.-.|..+.+..
T Consensus       297 ~ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAe  375 (531)
T COG3898         297 DIALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAE  375 (531)
T ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhc
Confidence            455555555444444444444   456789999999999999999999999999999999999984 4445688887666


Q ss_pred             HHHHHHHHHHHhcccCCCCCCc
Q 024531          216 KAVYKKQKEIYKGIFGPRPEPK  237 (266)
Q Consensus       216 ~~~~~~~~~~~~k~~~~~~~~~  237 (266)
                      .....+.++...+.+..+.++.
T Consensus       376 tGDqg~vR~wlAqav~APrdPa  397 (531)
T COG3898         376 TGDQGKVRQWLAQAVKAPRDPA  397 (531)
T ss_pred             cCchHHHHHHHHHHhcCCCCCc
Confidence            4555566666666666555543

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=92.66  E-value=0.56  Score=27.69  Aligned_cols=25  Identities=24%  Similarity=0.298  Sum_probs=21.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHh
Q 024531          172 FRRGKARAELGQTDAAREDFLKAGK  196 (266)
Q Consensus       172 ~~~g~~~~~~g~~~~A~~~~~~al~  196 (266)
                      +.+|.+|..+|+++.|.+.++.++.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            5788888888888888888888884

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=92.65  E-value=0.28  Score=41.79  Aligned_cols=76  Identities=21%  Similarity=0.159  Sum_probs=62.3

Q ss_pred             hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024531          136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFR-RGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL  211 (266)
Q Consensus       136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~-~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l  211 (266)
                      .+...+....+.|.|.+--..|.+++...|.|...|.. -+.-+...++++.+...|+++++++|+++.++.+.-+.
T Consensus       109 ~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr~  185 (435)
T COG5191         109 IWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFRM  185 (435)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHHH
Confidence            35555555667778999999999999999999887754 55667888999999999999999999999887665544

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=92.64  E-value=1.9  Score=31.01  Aligned_cols=72  Identities=14%  Similarity=0.055  Sum_probs=55.8

Q ss_pred             HHHHHHHhhCHHHHHHHHHhHhcCCCCchH---HHHHHHHHHHHcCCH-----------HHHHHHHHHHHhhCCCCHHHH
Q 024531          140 MAACLLKLKRYEEAIGQCSLVLGEDENNVK---ALFRRGKARAELGQT-----------DAAREDFLKAGKFAPEDKSIA  205 (266)
Q Consensus       140 ~a~~~~~~~~~~~A~~~~~~al~l~p~~~~---a~~~~g~~~~~~g~~-----------~~A~~~~~~al~l~p~~~~~~  205 (266)
                      +|..++..|++-+|++..+..+...+++..   .+...|.++..+..-           -.++++|.++..+.|..+..+
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            577889999999999999999988877663   455567777655432           578999999999999886666


Q ss_pred             HHHHHH
Q 024531          206 RELRLL  211 (266)
Q Consensus       206 ~~l~~l  211 (266)
                      ..|+.-
T Consensus        82 ~~la~~   87 (111)
T PF04781_consen   82 FELASQ   87 (111)
T ss_pred             HHHHHH
Confidence            555543

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=92.41  E-value=0.69  Score=33.72  Aligned_cols=75  Identities=19%  Similarity=0.068  Sum_probs=55.4

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  162 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~  162 (266)
                      +-.+-.++..+...|+|++++..-.++|.+.+.-..      ..+.-..+.+.+-+++|.++-.+|+.++|+..|+.+-+
T Consensus        55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGE------L~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE  128 (144)
T PF12968_consen   55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGE------LHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE  128 (144)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--------TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccc------cccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence            344556777888999999999999999988754221      11122456777899999999999999999999998865


Q ss_pred             C
Q 024531          163 E  163 (266)
Q Consensus       163 l  163 (266)
                      +
T Consensus       129 M  129 (144)
T PF12968_consen  129 M  129 (144)
T ss_dssp             H
T ss_pred             H
Confidence            3

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=92.35  E-value=1.1  Score=37.46  Aligned_cols=73  Identities=18%  Similarity=0.089  Sum_probs=62.3

Q ss_pred             HHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCc
Q 024531           88 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN  167 (266)
Q Consensus        88 ~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~  167 (266)
                      ..=..+...+++..|...-.+.+.++|.++.                 -..-+|.+|.++|.+.-|+.++...++..|+.
T Consensus       186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~-----------------eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~  248 (269)
T COG2912         186 NLKAALLRELQWELALRVAERLLDLNPEDPY-----------------EIRDRGLIYAQLGCYHVALEDLSYFVEHCPDD  248 (269)
T ss_pred             HHHHHHHHhhchHHHHHHHHHHHhhCCCChh-----------------hccCcHHHHHhcCCchhhHHHHHHHHHhCCCc
Confidence            3445677789999999999999999999865                 27789999999999999999999999999999


Q ss_pred             hHHHHHHHHH
Q 024531          168 VKALFRRGKA  177 (266)
Q Consensus       168 ~~a~~~~g~~  177 (266)
                      +.+-.-++..
T Consensus       249 ~~a~~ir~~l  258 (269)
T COG2912         249 PIAEMIRAQL  258 (269)
T ss_pred             hHHHHHHHHH
Confidence            8877655543

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=92.34  E-value=1.5  Score=33.25  Aligned_cols=74  Identities=14%  Similarity=-0.108  Sum_probs=49.4

Q ss_pred             HHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024531          140 MAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAE  213 (266)
Q Consensus       140 ~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  213 (266)
                      ....-...++.+++.......--+.|+.......-|..++..|+|.+|+..|+.+.+-.+..+-.+..+..|..
T Consensus        16 ~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~   89 (153)
T TIGR02561        16 VLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN   89 (153)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence            33344446677777776666666777777777777777777777777777777777666665655555555543

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=92.33  E-value=7.2  Score=37.00  Aligned_cols=118  Identities=8%  Similarity=-0.055  Sum_probs=83.7

Q ss_pred             HHHHHhHHHHhhccHHHHHHHHHHHHhhhccch---hhhh------chhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHH
Q 024531           85 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDF---MFQL------FGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIG  155 (266)
Q Consensus        85 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~---~~~~------~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~  155 (266)
                      .+.--|......+..+.|.+.+.++++......   ....      ......-...+...++...+.+.+-.++|..|..
T Consensus       303 ~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~  382 (608)
T PF10345_consen  303 VYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQ  382 (608)
T ss_pred             HHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence            334457777888888899999999998765433   0000      0111222345566678889999999999999998


Q ss_pred             HHHhHhcCC---C------CchHHHHHHHHHHHHcCCHHHHHHHHH--------HHHhhCCCCH
Q 024531          156 QCSLVLGED---E------NNVKALFRRGKARAELGQTDAAREDFL--------KAGKFAPEDK  202 (266)
Q Consensus       156 ~~~~al~l~---p------~~~~a~~~~g~~~~~~g~~~~A~~~~~--------~al~l~p~~~  202 (266)
                      ....+....   |      ..+..+|-.|..+...|+.+.|...|.        .+....+.+.
T Consensus       383 ~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~E  446 (608)
T PF10345_consen  383 ELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRE  446 (608)
T ss_pred             HHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchH
Confidence            888776542   2      247789999999999999999999998        4545555543

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=91.98  E-value=3  Score=36.77  Aligned_cols=104  Identities=17%  Similarity=0.086  Sum_probs=72.1

Q ss_pred             hccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh---------cC---
Q 024531           96 EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL---------GE---  163 (266)
Q Consensus        96 ~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al---------~l---  163 (266)
                      ...|.++...|..++.....+......     ......+..+..++.++...|+...|-+.+++||         ..   
T Consensus         7 s~~Y~~~q~~F~~~v~~~Dp~~l~~ll-----~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~   81 (360)
T PF04910_consen    7 SKAYQEAQEQFYAAVQSHDPNALINLL-----QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPF   81 (360)
T ss_pred             CHHHHHHHHHHHHHHHccCHHHHHHHH-----HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            345677777777776643111100000     0012245578899999999999999999888886         11   


Q ss_pred             --CCC------------c---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHH
Q 024531          164 --DEN------------N---VKALFRRGKARAELGQTDAAREDFLKAGKFAPE-DKSI  204 (266)
Q Consensus       164 --~p~------------~---~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~-~~~~  204 (266)
                        ++.            |   ..++++....+.+.|.+..|.+..+-.+.+||. |+-.
T Consensus        82 ~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g  140 (360)
T PF04910_consen   82 RSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLG  140 (360)
T ss_pred             hcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcch
Confidence              221            1   357888999999999999999999999999998 6533

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PHA02537 M terminase endonuclease subunit; Provisional

Probab=91.96  E-value=0.75  Score=37.70  Aligned_cols=117  Identities=12%  Similarity=-0.031  Sum_probs=63.7

Q ss_pred             HhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCH-HHH-HHHHHhHhc-C-CCCc--
Q 024531           94 FKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRY-EEA-IGQCSLVLG-E-DENN--  167 (266)
Q Consensus        94 ~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~-~~A-~~~~~~al~-l-~p~~--  167 (266)
                      |..|+|+.|++....||+..-..++.     .......+...-..+-|......|.. +-. ...+..+.. . =|+.  
T Consensus        94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd~-----f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vr  168 (230)
T PHA02537         94 FDIGDFDGALEIAEYALEHGLTMPDQ-----FRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVR  168 (230)
T ss_pred             eeccCHHHHHHHHHHHHHcCCCCCcc-----ccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHH
Confidence            56799999999999999875332210     00000111111223333334444431 111 111111111 1 1233  


Q ss_pred             hHHHHHHHHHHH---------HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 024531          168 VKALFRRGKARA---------ELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEK  216 (266)
Q Consensus       168 ~~a~~~~g~~~~---------~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~  216 (266)
                      .+-|-..|..+.         ..++...|+..+++|+.++|+ ..+...+.++..+++
T Consensus       169 AKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k-~GVK~~i~~l~~~lr  225 (230)
T PHA02537        169 AKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK-CGVKKDIERLERRLK  225 (230)
T ss_pred             HHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC-CChHHHHHHHHHHHh
Confidence            344555677663         556888999999999999986 566666776655554

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=91.86  E-value=8.6  Score=34.01  Aligned_cols=97  Identities=15%  Similarity=-0.017  Sum_probs=56.7

Q ss_pred             HHhHHHHh---hccHHHHHHHHHHHHhhhcc-chhhhhchhHHHHHHHhhhhhhhhHHHHHHH---------hhCHHHHH
Q 024531           88 MDGNALFK---EEKLEEAMQQYEMAIAYMGD-DFMFQLFGKYRDMALAVKNPCHLNMAACLLK---------LKRYEEAI  154 (266)
Q Consensus        88 ~~g~~~~~---~g~~~~A~~~y~~al~~~~~-~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~---------~~~~~~A~  154 (266)
                      ..|-.+-+   .|+.++|+..+..++..... +++                 .+.-.|.+|-.         ....++|+
T Consensus       184 ~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d-----------------~~gL~GRIyKD~~~~s~~~d~~~ldkAi  246 (374)
T PF13281_consen  184 QYAFALNRRNKPGDREKALQILLPVLESDENPDPD-----------------TLGLLGRIYKDLFLESNFTDRESLDKAI  246 (374)
T ss_pred             HHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH-----------------HHHHHHHHHHHHHHHcCccchHHHHHHH
Confidence            44555555   78999999999886654432 222                 12222322221         22366677


Q ss_pred             HHHHhHhcCCCCc---------------------------------------------hHHHHHHHHHHHHcCCHHHHHH
Q 024531          155 GQCSLVLGEDENN---------------------------------------------VKALFRRGKARAELGQTDAARE  189 (266)
Q Consensus       155 ~~~~~al~l~p~~---------------------------------------------~~a~~~~g~~~~~~g~~~~A~~  189 (266)
                      ..|.++.+++|+.                                             .+.+-.++.+..-.|++++|..
T Consensus       247 ~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~  326 (374)
T PF13281_consen  247 EWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQ  326 (374)
T ss_pred             HHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHH
Confidence            7777777666532                                             2334445556666677777777


Q ss_pred             HHHHHHhhCCCC
Q 024531          190 DFLKAGKFAPED  201 (266)
Q Consensus       190 ~~~~al~l~p~~  201 (266)
                      .+++++.+.|..
T Consensus       327 a~e~~~~l~~~~  338 (374)
T PF13281_consen  327 AAEKAFKLKPPA  338 (374)
T ss_pred             HHHHHhhcCCcc
Confidence            777777766553

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=91.85  E-value=0.35  Score=43.04  Aligned_cols=60  Identities=13%  Similarity=0.063  Sum_probs=48.6

Q ss_pred             hhhhHHHHHHHhhCHHHHHHHHHhHhcC---------CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024531          136 CHLNMAACLLKLKRYEEAIGQCSLVLGE---------DENNVKALFRRGKARAELGQTDAAREDFLKAGK  196 (266)
Q Consensus       136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l---------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~  196 (266)
                      ++..+..++.-+|+|..|++..+.. ++         -+.+...+|..|.||+.+++|.+|++.|..++.
T Consensus       124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566778888899999999987543 22         234567899999999999999999999998875

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=91.66  E-value=1.5  Score=32.03  Aligned_cols=117  Identities=19%  Similarity=0.099  Sum_probs=76.5

Q ss_pred             HHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh----H
Q 024531           85 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL----V  160 (266)
Q Consensus        85 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~----a  160 (266)
                      .+-..|+..++.+++-.|+-+|++|+....+...  ..+..-+..-.+.+...-|+|.-+...|+.+=.+++++-    +
T Consensus         3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~--~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~V   80 (140)
T PF10952_consen    3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDE--SNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKV   80 (140)
T ss_pred             hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcc--cccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHH
Confidence            4567899999999999999999999998655311  111222333455566778999999999999989998864    4


Q ss_pred             hcCCCCchHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024531          161 LGEDENNVKALFRRGKA-RAELGQTDAAREDFLKAGKFAPEDKSIARELRL  210 (266)
Q Consensus       161 l~l~p~~~~a~~~~g~~-~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~  210 (266)
                      +.+-|.=+...   ..+ --.+|--..|+-+|   ++..|+ |.+.+.+..
T Consensus        81 ltLiPQCp~~~---C~afi~sLGCCk~ALl~F---~KRHPN-P~iA~~vq~  124 (140)
T PF10952_consen   81 LTLIPQCPNTE---CEAFIDSLGCCKKALLDF---MKRHPN-PEIARLVQH  124 (140)
T ss_pred             HHhccCCCCcc---hHHHHHhhhccHHHHHHH---HHhCCC-HHHHHHHHh
Confidence            56666422211   011 22455566677666   456776 555555543

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=91.60  E-value=1.3  Score=36.72  Aligned_cols=61  Identities=11%  Similarity=0.121  Sum_probs=28.4

Q ss_pred             HHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531           88 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  159 (266)
Q Consensus        88 ~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~  159 (266)
                      +.|..++..|+|+.|+..|+.+......+..           ..+...++..+..|+..+|+.+..+..+-+
T Consensus       183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW-----------~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le  243 (247)
T PF11817_consen  183 EMAEEYFRLGDYDKALKLLEPAASSYRREGW-----------WSLLTEVLWRLLECAKRLGDVEDYLTTSLE  243 (247)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCc-----------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            3455555555555555555555443332222           112223444555555555555555444433

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>TIGR00115 tig trigger factor

Probab=91.30  E-value=0.79  Score=41.11  Aligned_cols=57  Identities=23%  Similarity=0.331  Sum_probs=44.6

Q ss_pred             ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeeccccc
Q 024531            2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETK   66 (266)
Q Consensus         2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~~~~~   66 (266)
                      +||.+ .+++||+.+|..|+.|+...|.++....|+..+.       .+.++.|.+.+..+....
T Consensus       177 ~lg~~-~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~-------~gk~~~f~v~i~~I~~~~  233 (408)
T TIGR00115       177 ELGSG-QFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEEL-------AGKEATFKVTVKEVKEKE  233 (408)
T ss_pred             EECCC-CcchhHHHHhCCCCCCCeeEEEecCccccCcccC-------CCCeEEEEEEEEEeccCC
Confidence            57887 7999999999999999999999975544543222       467789999988886643

Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=91.26  E-value=0.41  Score=27.29  Aligned_cols=31  Identities=26%  Similarity=0.440  Sum_probs=27.0

Q ss_pred             HHHHHHhHHHHhhccHHHHHHHHHHHHhhhc
Q 024531           84 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMG  114 (266)
Q Consensus        84 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~  114 (266)
                      +.+-.+|.+.+..++|.+|+..|.+||++..
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~   32 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQE   32 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            3566789999999999999999999999753

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=91.23  E-value=5.2  Score=35.49  Aligned_cols=135  Identities=17%  Similarity=0.146  Sum_probs=92.1

Q ss_pred             ccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhh--CHHHHHHHHHhHhcCCCCchHHHHHH
Q 024531           97 EKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK--RYEEAIGQCSLVLGEDENNVKALFRR  174 (266)
Q Consensus        97 g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~--~~~~A~~~~~~al~l~p~~~~a~~~~  174 (266)
                      .-.+.-+.....++..+|+...                 +.+.+..++.+.+  +|..-+..|+++|+.||.|..+|..+
T Consensus        89 ~~ld~eL~~~~~~L~~npksY~-----------------aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YR  151 (421)
T KOG0529|consen   89 ALLDEELKYVESALKVNPKSYG-----------------AWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYR  151 (421)
T ss_pred             HhhHHHHHHHHHHHHhCchhHH-----------------HHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHH
Confidence            3567778888888888888655                 5788999988777  48899999999999999987765544


Q ss_pred             HHHHH-HcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH-----------HHH-HHHHHHHHhcccCCCCCCcc
Q 024531          175 GKARA-ELG---QTDAAREDFLKAGKFAPEDKSIARELRLLAEHE-----------KAV-YKKQKEIYKGIFGPRPEPKQ  238 (266)
Q Consensus       175 g~~~~-~~g---~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~-----------~~~-~~~~~~~~~k~~~~~~~~~~  238 (266)
                      -.+.. ...   ...+-+++..+++.-++.|-.++..-..+...+           +.. ..+-......||   .++.+
T Consensus       152 RfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiF---Tdp~D  228 (421)
T KOG0529|consen  152 RFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIF---TDPED  228 (421)
T ss_pred             HHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHh---cCccc
Confidence            33332 222   367788889999999999988877666553311           111 112223344555   56666


Q ss_pred             cchhHHHhHHHHHHH
Q 024531          239 KKNWLIIFWQLLVSL  253 (266)
Q Consensus       239 ~~~~~~~~~~~~~~~  253 (266)
                      +++|+=  .+||.+.
T Consensus       229 qS~WfY--~rWLl~~  241 (421)
T KOG0529|consen  229 QSCWFY--HRWLLGR  241 (421)
T ss_pred             cceeee--hHHhhcc
Confidence            778865  5556554

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=91.02  E-value=2.6  Score=38.31  Aligned_cols=129  Identities=16%  Similarity=0.045  Sum_probs=84.9

Q ss_pred             HHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHH
Q 024531           91 NALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKA  170 (266)
Q Consensus        91 ~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a  170 (266)
                      ...+..|+...|-+....+++..|.++.                 ....++.++..+|.|+.|.....-+-..-....++
T Consensus       297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~-----------------~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~  359 (831)
T PRK15180        297 TKQLADGDIIAASQQLFAALRNQQQDPV-----------------LIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDST  359 (831)
T ss_pred             HHHhhccCHHHHHHHHHHHHHhCCCCch-----------------hhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchH
Confidence            3445678888888888888888888766                 35567888888888888888776655544445566


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCc
Q 024531          171 LFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPK  237 (266)
Q Consensus       171 ~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~~~  237 (266)
                      .--+-...+.+|++++|...-.-.+.-+-+++++..--+ ....+-++-++.=-.++..|...+..+
T Consensus       360 ~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa-~sa~~l~~~d~~~~~wk~~~~~~~~~~  425 (831)
T PRK15180        360 LRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAA-GSADALQLFDKSYHYWKRVLLLNPETQ  425 (831)
T ss_pred             HHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeec-ccHHHHhHHHHHHHHHHHHhccCChhc
Confidence            666666778888888888887777766556666543222 222222333344445677776555443

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.01  E-value=6.9  Score=31.25  Aligned_cols=140  Identities=15%  Similarity=0.151  Sum_probs=82.6

Q ss_pred             hHHHHhhc---cHHHHHHHHHHHHhhhccchhhhhchhHHHHHHH-----hhhhhhhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531           90 GNALFKEE---KLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALA-----VKNPCHLNMAACLLKLKRYEEAIGQCSLVL  161 (266)
Q Consensus        90 g~~~~~~g---~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~n~a~~~~~~~~~~~A~~~~~~al  161 (266)
                      |-.+++..   +...|-..|.+++........ ............     .-.-+-..+|..+...+++++|+..++.++
T Consensus        38 GW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l  116 (207)
T COG2976          38 GWRYWQSHQVEQAQEASAQYQNAIKAVQAKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQAL  116 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            44444443   445788888888876643211 111111111111     112234568899999999999999999999


Q ss_pred             cCCCC-ch--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 024531          162 GEDEN-NV--KALFRRGKARAELGQTDAAREDFLKAGKFAPEDKS-IARELRLLAEHEKAVYKKQKEIYKGIFGPR  233 (266)
Q Consensus       162 ~l~p~-~~--~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~-~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~  233 (266)
                      ....+ +.  -+-.|+|.+..++|.+++|+..+.....  ++-.. .....+.+.-.++.. ++.+.-|.+.+...
T Consensus       117 ~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDill~kg~k-~~Ar~ay~kAl~~~  189 (207)
T COG2976         117 AQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGDILLAKGDK-QEARAAYEKALESD  189 (207)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhhHHHHcCch-HHHHHHHHHHHHcc
Confidence            65433 22  3567899999999999999998864432  22122 222333343334444 44455577777654

>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=91.00  E-value=2.3  Score=38.09  Aligned_cols=126  Identities=13%  Similarity=0.105  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhh-hhHHHHHH-HhhC-----HH
Q 024531           79 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCH-LNMAACLL-KLKR-----YE  151 (266)
Q Consensus        79 ~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~-~n~a~~~~-~~~~-----~~  151 (266)
                      .+.......+.|-.++..|+|.+|+..|..+|...|-....  ..++.++.+++...+. |-+|...- ..+.     .+
T Consensus       200 ~l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~--~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~  277 (422)
T PF06957_consen  200 SLSSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVE--SREEEDEAKELIEICREYILGLSIELERRELPKDPVE  277 (422)
T ss_dssp             -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BS--SCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHH
T ss_pred             CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeec--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchh
Confidence            34445556678999999999999999999999988753221  1222233333332232 22332221 1111     11


Q ss_pred             HHHHHHH-----hHhcCCCCchHHHHHH-HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 024531          152 EAIGQCS-----LVLGEDENNVKALFRR-GKARAELGQTDAAREDFLKAGKFAPEDKSIAR  206 (266)
Q Consensus       152 ~A~~~~~-----~al~l~p~~~~a~~~~-g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~  206 (266)
                      .....++     .-..+.|.+..--.+. -...++.++|..|...-++.|++.|..+.+..
T Consensus       278 ~~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~q  338 (422)
T PF06957_consen  278 DQKRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAEQ  338 (422)
T ss_dssp             HHHHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHHH
T ss_pred             hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHH
Confidence            1111111     1224455444333333 34556899999999999999999998765443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=90.98  E-value=5.9  Score=37.12  Aligned_cols=132  Identities=17%  Similarity=0.086  Sum_probs=88.9

Q ss_pred             HHHHHHHhHHHHhh-----ccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhh-----CHHH
Q 024531           83 ADRRKMDGNALFKE-----EKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK-----RYEE  152 (266)
Q Consensus        83 ~~~~~~~g~~~~~~-----g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~-----~~~~  152 (266)
                      +......|.+++.-     .|.+.|+..|..+....-...            ......+.+.+|.+|.+..     ++..
T Consensus       244 ~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a------------~~~~~~a~~~lg~~Y~~g~~~~~~d~~~  311 (552)
T KOG1550|consen  244 SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAA------------TKGLPPAQYGLGRLYLQGLGVEKIDYEK  311 (552)
T ss_pred             hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH------------hhcCCccccHHHHHHhcCCCCccccHHH
Confidence            34445556666553     589999999999877200000            0012235788999999854     6788


Q ss_pred             HHHHHHhHhcCCCCchHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 024531          153 AIGQCSLVLGEDENNVKALFRRGKARAELG---QTDAAREDFLKAGKFAPEDKSIARELRLLAEH---EKAVYKKQKEIY  226 (266)
Q Consensus       153 A~~~~~~al~l~p~~~~a~~~~g~~~~~~g---~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~---~~~~~~~~~~~~  226 (266)
                      |+..+.++-.+  .++.+.+.+|.++..-.   ++..|..+|..|..  -.+..+...+..|...   ...........|
T Consensus       312 A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~--~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~  387 (552)
T KOG1550|consen  312 ALKLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK--AGHILAIYRLALCYELGLGVERNLELAFAYY  387 (552)
T ss_pred             HHHHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHH--cCChHHHHHHHHHHHhCCCcCCCHHHHHHHH
Confidence            99999999887  47899999999998877   67899999998875  3456666677777543   222333344444


Q ss_pred             hccc
Q 024531          227 KGIF  230 (266)
Q Consensus       227 ~k~~  230 (266)
                      ++.-
T Consensus       388 k~aA  391 (552)
T KOG1550|consen  388 KKAA  391 (552)
T ss_pred             HHHH
Confidence            4443

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=90.80  E-value=5.9  Score=30.14  Aligned_cols=86  Identities=8%  Similarity=-0.114  Sum_probs=69.8

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  162 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~  162 (266)
                      +..+.+........++.+++.......--+.|+...                 +...-|..++..|+|.+|+..++.+.+
T Consensus        10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e-----------------~d~~dg~l~i~rg~w~eA~rvlr~l~~   72 (153)
T TIGR02561        10 LGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKE-----------------LDMFDGWLLIARGNYDEAARILRELLS   72 (153)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccc-----------------cchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence            344455555555688889988888887778888655                 467789999999999999999999999


Q ss_pred             CCCCchHHHHHHHHHHHHcCCHH
Q 024531          163 EDENNVKALFRRGKARAELGQTD  185 (266)
Q Consensus       163 l~p~~~~a~~~~g~~~~~~g~~~  185 (266)
                      -.+..+-+--.++.|+..+||.+
T Consensus        73 ~~~~~p~~kAL~A~CL~al~Dp~   95 (153)
T TIGR02561        73 SAGAPPYGKALLALCLNAKGDAE   95 (153)
T ss_pred             cCCCchHHHHHHHHHHHhcCChH
Confidence            88888877778899999999873

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=90.70  E-value=2.1  Score=34.82  Aligned_cols=59  Identities=22%  Similarity=0.185  Sum_probs=39.6

Q ss_pred             hccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCC
Q 024531           96 EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDE  165 (266)
Q Consensus        96 ~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p  165 (266)
                      ..=+..|+..|.+++........    +.     .  ...+++.+|..+.++|++++|+..+.+++....
T Consensus       138 ~~fl~~Al~~y~~a~~~e~~~~~----~~-----~--~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~  196 (214)
T PF09986_consen  138 KRFLRKALEFYEEAYENEDFPIE----GM-----D--EATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK  196 (214)
T ss_pred             HHHHHHHHHHHHHHHHhCcCCCC----Cc-----h--HHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence            33356666667666665433110    00     0  122678899999999999999999999997643

>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=90.61  E-value=0.39  Score=37.46  Aligned_cols=39  Identities=26%  Similarity=0.462  Sum_probs=35.4

Q ss_pred             ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCCC
Q 024531            2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGS   41 (266)
Q Consensus         2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~   41 (266)
                      .+|++ .||+|.+.++.-|+.||...+.++|..+|+..+.
T Consensus         2 ~~g~~-~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~   40 (188)
T KOG0549|consen    2 TLGQG-FVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGR   40 (188)
T ss_pred             cccce-EEecCHHHHhhhhhccccceeccCCccccccccc
Confidence            57888 6999999999999999999999999999995554

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=90.30  E-value=1.5  Score=36.68  Aligned_cols=62  Identities=15%  Similarity=-0.127  Sum_probs=51.7

Q ss_pred             HHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHH
Q 024531          102 AMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAE  180 (266)
Q Consensus       102 A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~  180 (266)
                      |...|.+|+.+.|....                 .|+.+|..+...|+.-.|+-+|-+++......+.|.-++...+..
T Consensus         1 A~~~Y~~A~~l~P~~G~-----------------p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGN-----------------PYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSH-----------------HHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCC-----------------cccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            68899999999999665                 599999999999999999999999997766678888888888877

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=90.14  E-value=5.9  Score=36.76  Aligned_cols=96  Identities=17%  Similarity=0.053  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHH
Q 024531           99 LEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKAR  178 (266)
Q Consensus        99 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~  178 (266)
                      -..++..+...+.+.+..+..             . .... ++..+...+....+.-....++..+|++..++.++|.+.
T Consensus        47 ~~~~~~a~~~~~~~~~~~~~l-------------l-la~~-lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~al  111 (620)
T COG3914          47 QALAIYALLLGIAINDVNPEL-------------L-LAAF-LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAAL  111 (620)
T ss_pred             hhHHHHHHHccCccCCCCHHH-------------H-HHHH-HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHH
Confidence            333667777777776665431             1 1122 678888888998899999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHH-HHhhCCCCHHHHHHHH
Q 024531          179 AELGQTDAAREDFLK-AGKFAPEDKSIARELR  209 (266)
Q Consensus       179 ~~~g~~~~A~~~~~~-al~l~p~~~~~~~~l~  209 (266)
                      ...|....+...+.. +....|+|..+...+-
T Consensus       112 e~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  143 (620)
T COG3914         112 ELDGLQFLALADISEIAEWLSPDNAEFLGHLI  143 (620)
T ss_pred             HHhhhHHHHHHHHHHHHHhcCcchHHHHhhHH
Confidence            999888888777766 8999999998888873

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=89.91  E-value=2.5  Score=40.92  Aligned_cols=117  Identities=14%  Similarity=0.057  Sum_probs=72.6

Q ss_pred             HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccch--hhhhchhHHHHHHHh-hhhhhhhHHHHHHHhhCHHHHHHHH
Q 024531           81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDF--MFQLFGKYRDMALAV-KNPCHLNMAACLLKLKRYEEAIGQC  157 (266)
Q Consensus        81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~--~~~~~~~~~~~~~~l-~~~~~~n~a~~~~~~~~~~~A~~~~  157 (266)
                      ..-..+++.+..+-.++|...|+++|.++=...-+-.  ..+.+...+...+.. -..+|..-|+..-..|+.+.|+.+|
T Consensus       856 HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y  935 (1416)
T KOG3617|consen  856 HLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFY  935 (1416)
T ss_pred             ehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHH
Confidence            3334455556666666777777777766422110000  001111111111111 1346777888888899999999988


Q ss_pred             HhHhcC---------------------CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024531          158 SLVLGE---------------------DENNVKALFRRGKARAELGQTDAAREDFLKAGKF  197 (266)
Q Consensus       158 ~~al~l---------------------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  197 (266)
                      ..|-..                     ...+--|-|.+|.-|...|++.+|+..|-+|...
T Consensus       936 ~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf  996 (1416)
T KOG3617|consen  936 SSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF  996 (1416)
T ss_pred             HHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            776432                     2245678899999999999999999998887654

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=89.24  E-value=18  Score=34.41  Aligned_cols=117  Identities=20%  Similarity=0.164  Sum_probs=82.9

Q ss_pred             HHHHHHHHhHHHH-hhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhH
Q 024531           82 AADRRKMDGNALF-KEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  160 (266)
Q Consensus        82 ~~~~~~~~g~~~~-~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~a  160 (266)
                      .+......|..++ ...+++.|..+..+++.+.... ..          .++...+.+-++.++.+.+... |...++++
T Consensus        58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~-~~----------~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~  125 (608)
T PF10345_consen   58 EARVRLRLASILLEETENLDLAETYLEKAILLCERH-RL----------TDLKFRCQFLLARIYFKTNPKA-ALKNLDKA  125 (608)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-ch----------HHHHHHHHHHHHHHHHhcCHHH-HHHHHHHH
Confidence            3667778898888 5689999999999999988652 11          3334455667799998888777 99999999


Q ss_pred             hcCCCC----chHHHHHHH--HHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHH
Q 024531          161 LGEDEN----NVKALFRRG--KARAELGQTDAAREDFLKAGKFA--PEDKSIARELRL  210 (266)
Q Consensus       161 l~l~p~----~~~a~~~~g--~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~l~~  210 (266)
                      ++....    .....|++-  ..+...+++..|.+.++....+.  ++++.+.-.+..
T Consensus       126 I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l  183 (608)
T PF10345_consen  126 IEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASL  183 (608)
T ss_pred             HHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHH
Confidence            876544    233334443  22323379999999999999887  466665544433

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=89.14  E-value=2.7  Score=37.48  Aligned_cols=53  Identities=6%  Similarity=-0.060  Sum_probs=44.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 024531          172 FRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKE  224 (266)
Q Consensus       172 ~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~  224 (266)
                      -.+..||..+++.+-|+....+.+.++|.+..-+-.-+.|...+.++.++.+.
T Consensus       232 tklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarS  284 (569)
T PF15015_consen  232 TKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARS  284 (569)
T ss_pred             HHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            36899999999999999999999999999876665566677888888877774

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=88.95  E-value=13  Score=31.28  Aligned_cols=96  Identities=16%  Similarity=0.069  Sum_probs=57.0

Q ss_pred             HHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhh-CHHHHHHHHHhHhcCCCCchHHH
Q 024531           93 LFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK-RYEEAIGQCSLVLGEDENNVKAL  171 (266)
Q Consensus        93 ~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~-~~~~A~~~~~~al~l~p~~~~a~  171 (266)
                      +++...=..|+..-..+|.++|....                 +...+-.|+..++ +..+-+++...+++-+|.|-..|
T Consensus        53 ~~~~E~S~RAl~LT~d~i~lNpAnYT-----------------VW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvW  115 (318)
T KOG0530|consen   53 IAKNEKSPRALQLTEDAIRLNPANYT-----------------VWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVW  115 (318)
T ss_pred             HhccccCHHHHHHHHHHHHhCcccch-----------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHH
Confidence            34455668899999999999998543                 2333333433333 34555556666666666666666


Q ss_pred             HHHHHHHHHcCCHH-HHHHHHHHHHhhCCCCHHHH
Q 024531          172 FRRGKARAELGQTD-AAREDFLKAGKFAPEDKSIA  205 (266)
Q Consensus       172 ~~~g~~~~~~g~~~-~A~~~~~~al~l~p~~~~~~  205 (266)
                      ..+-.+...+|+.. .-++....++..+..|=.+.
T Consensus       116 HHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaW  150 (318)
T KOG0530|consen  116 HHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAW  150 (318)
T ss_pred             HHHHHHHHHhcCcccchHHHHHHHHhccccchhhh
Confidence            55555555666555 55555666666555553333

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=88.91  E-value=0.63  Score=23.83  Aligned_cols=23  Identities=26%  Similarity=0.192  Sum_probs=20.8

Q ss_pred             hhhhHHHHHHHhhCHHHHHHHHH
Q 024531          136 CHLNMAACLLKLKRYEEAIGQCS  158 (266)
Q Consensus       136 ~~~n~a~~~~~~~~~~~A~~~~~  158 (266)
                      ++.++|.++...|++++|...++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            57899999999999999998775

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PRK01490 tig trigger factor; Provisional

Probab=88.84  E-value=1.7  Score=39.40  Aligned_cols=56  Identities=23%  Similarity=0.350  Sum_probs=42.7

Q ss_pred             ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeecccc
Q 024531            2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDET   65 (266)
Q Consensus         2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~~~~   65 (266)
                      .||.+ .+++||+.+|..|+.|+...|.+...-.|+....       .+..+.|.+.+..+...
T Consensus       188 ~lg~~-~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~l-------agk~~~f~v~v~~V~~~  243 (435)
T PRK01490        188 ELGSG-RFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDL-------AGKEATFKVTVKEVKEK  243 (435)
T ss_pred             EEcCC-CcchhHHHHhCCCCCCCeeEEEecCccccccccC-------CCCeEEEEEEEEEeccC
Confidence            58888 7999999999999999999998864444432211       34678899988887654

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=88.34  E-value=8.7  Score=33.25  Aligned_cols=61  Identities=10%  Similarity=0.042  Sum_probs=52.8

Q ss_pred             HHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024531          150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRL  210 (266)
Q Consensus       150 ~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~  210 (266)
                      .+..+..+++||+.+|++...+..+=.+..+..+-++..+-+++++..+|++..++..+-.
T Consensus        47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~  107 (321)
T PF08424_consen   47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLD  107 (321)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence            5677889999999999999998888888889999999999999999999998877654443

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=88.07  E-value=15  Score=30.97  Aligned_cols=105  Identities=14%  Similarity=0.001  Sum_probs=75.5

Q ss_pred             HHHHHhHHHHh----hccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHh----h---CHHHH
Q 024531           85 RRKMDGNALFK----EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKL----K---RYEEA  153 (266)
Q Consensus        85 ~~~~~g~~~~~----~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~----~---~~~~A  153 (266)
                      .....|..+..    ..++.+|...|.++........                ..+..+++.+|..-    +   +...|
T Consensus       111 a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a----------------~~~~~~l~~~~~~g~~~~~~~~~~~~A  174 (292)
T COG0790         111 ALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA----------------ALAMYRLGLAYLSGLQALAVAYDDKKA  174 (292)
T ss_pred             HHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH----------------HHHHHHHHHHHHcChhhhcccHHHHhH
Confidence            44556666665    4488999999999988754421                11256677777653    1   23478


Q ss_pred             HHHHHhHhcCCCCchHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024531          154 IGQCSLVLGEDENNVKALFRRGKARAE----LGQTDAAREDFLKAGKFAPEDKSIARELR  209 (266)
Q Consensus       154 ~~~~~~al~l~p~~~~a~~~~g~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~~l~  209 (266)
                      +..+.++-...  ++.+.+++|.+|..    -.++.+|..+|.++-+...  ......+.
T Consensus       175 ~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~  230 (292)
T COG0790         175 LYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG  230 (292)
T ss_pred             HHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence            88888887765  78999999988865    4588999999999998776  55555565

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=87.90  E-value=6  Score=34.91  Aligned_cols=103  Identities=17%  Similarity=-0.004  Sum_probs=81.0

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhcc-chhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhH
Q 024531           82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD-DFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  160 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~-~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~a  160 (266)
                      --..+......+.++|-+..|++..+-.+.++|. |+.-                +++.+-...++.++|+--++.++..
T Consensus       102 fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g----------------~ll~ID~~ALrs~~y~~Li~~~~~~  165 (360)
T PF04910_consen  102 FFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLG----------------VLLFIDYYALRSRQYQWLIDFSESP  165 (360)
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcch----------------hHHHHHHHHHhcCCHHHHHHHHHhH
Confidence            3445566677788899999999999999999998 5542                4556667777888888888888876


Q ss_pred             hcCCCC-----chHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHhhCCC
Q 024531          161 LGEDEN-----NVKALFRRGKARAELGQT---------------DAAREDFLKAGKFAPE  200 (266)
Q Consensus       161 l~l~p~-----~~~a~~~~g~~~~~~g~~---------------~~A~~~~~~al~l~p~  200 (266)
                      ......     -+..-|..+.|+..+++-               +.|...+++|+...|.
T Consensus       166 ~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~  225 (360)
T PF04910_consen  166 LAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW  225 (360)
T ss_pred             hhhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence            652111     346778899999999998               9999999999998885

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=87.72  E-value=4.6  Score=26.91  Aligned_cols=34  Identities=18%  Similarity=-0.007  Sum_probs=29.2

Q ss_pred             HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhc
Q 024531           81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMG  114 (266)
Q Consensus        81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~  114 (266)
                      ..+..+...|...-+.|+|.+|+..|..+|+..-
T Consensus         4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~   37 (76)
T cd02681           4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLI   37 (76)
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            3466777889999999999999999999999763

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=87.65  E-value=4.8  Score=33.44  Aligned_cols=61  Identities=18%  Similarity=0.168  Sum_probs=47.3

Q ss_pred             hhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCC------chHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024531          135 PCHLNMAACLLKLKRYEEAIGQCSLVLGEDEN------NVKALFRRGKARAELGQTDAAREDFLKAG  195 (266)
Q Consensus       135 ~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~------~~~a~~~~g~~~~~~g~~~~A~~~~~~al  195 (266)
                      .+...+|.-|+..|+|++|+..++.+......      ....+..+..|+..+|+.+..+...-+.+
T Consensus       179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl  245 (247)
T PF11817_consen  179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL  245 (247)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            35678999999999999999999999654322      24567788899999999988887755443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=87.51  E-value=4.5  Score=30.52  Aligned_cols=49  Identities=14%  Similarity=0.043  Sum_probs=29.5

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 024531          168 VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEK  216 (266)
Q Consensus       168 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~  216 (266)
                      .......+...+..|+|.-|......++..+|+|.+++.....+...+.
T Consensus        70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg  118 (141)
T PF14863_consen   70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG  118 (141)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence            3455556666667777777777777777777777777666665544433

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=87.27  E-value=3.2  Score=27.57  Aligned_cols=22  Identities=18%  Similarity=0.036  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHHHhhCCCCHHHH
Q 024531          184 TDAAREDFLKAGKFAPEDKSIA  205 (266)
Q Consensus       184 ~~~A~~~~~~al~l~p~~~~~~  205 (266)
                      |.+|++.+.+++...|+++.-.
T Consensus        29 Y~~aIe~L~q~~~~~pD~~~k~   50 (75)
T cd02682          29 YKKAIEVLSQIVKNYPDSPTRL   50 (75)
T ss_pred             HHHHHHHHHHHHHhCCChHHHH
Confidence            3444555566666778766543

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=87.21  E-value=21  Score=31.68  Aligned_cols=100  Identities=16%  Similarity=0.119  Sum_probs=78.7

Q ss_pred             hhhhHHHHHHHhhCHHHHHHHHHhHhcC----CCCchHHHHHHHHHHHH---cCCHHHHHHHHHHH-HhhCCCCHHHHHH
Q 024531          136 CHLNMAACLLKLKRYEEAIGQCSLVLGE----DENNVKALFRRGKARAE---LGQTDAAREDFLKA-GKFAPEDKSIARE  207 (266)
Q Consensus       136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l----~p~~~~a~~~~g~~~~~---~g~~~~A~~~~~~a-l~l~p~~~~~~~~  207 (266)
                      ...|+=.+|....+|+.-+...+..-.+    -++.+...+..|.++.+   .|+.++|+..+..+ ....+.+++....
T Consensus       143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL  222 (374)
T PF13281_consen  143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL  222 (374)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence            4668888899999999988888777666    44567778888999999   99999999999994 4455678999999


Q ss_pred             HHHHHHHHHH--------HHHHHHHHHhcccCCCCC
Q 024531          208 LRLLAEHEKA--------VYKKQKEIYKGIFGPRPE  235 (266)
Q Consensus       208 l~~l~~~~~~--------~~~~~~~~~~k~~~~~~~  235 (266)
                      ++++++..-.        ...+.-..|++.|...++
T Consensus       223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~  258 (374)
T PF13281_consen  223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD  258 (374)
T ss_pred             HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc
Confidence            9999776432        344556789999987754

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=87.09  E-value=5.2  Score=35.78  Aligned_cols=111  Identities=17%  Similarity=0.138  Sum_probs=65.3

Q ss_pred             hHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchH
Q 024531           90 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVK  169 (266)
Q Consensus        90 g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~  169 (266)
                      -..+.-.|||..|++.... |++.... .+       .....-.+.+++..|-||+.+++|.+|+..+..+|-.--. .+
T Consensus       129 lRvh~LLGDY~~Alk~l~~-idl~~~~-l~-------~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r-~k  198 (404)
T PF10255_consen  129 LRVHCLLGDYYQALKVLEN-IDLNKKG-LY-------TKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQR-TK  198 (404)
T ss_pred             HHHHHhccCHHHHHHHhhc-cCcccch-hh-------ccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh
Confidence            3556667899998886544 2222111 00       0001124567999999999999999999999998743111 11


Q ss_pred             -HHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHH
Q 024531          170 -ALFRRGKARA-ELGQTDAAREDFLKAGKFAPE--DKSIARELRL  210 (266)
Q Consensus       170 -a~~~~g~~~~-~~g~~~~A~~~~~~al~l~p~--~~~~~~~l~~  210 (266)
                       .+.....-+- -.+..++....+--++.+.|.  +..+...+..
T Consensus       199 ~~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~lke  243 (404)
T PF10255_consen  199 NQYHQRSYQYDQINKKNEQMYALLAICLSLCPQRLDESISSQLKE  243 (404)
T ss_pred             hhhccccchhhHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence             1111111111 124456777777778888886  5666555554

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=86.53  E-value=16  Score=37.19  Aligned_cols=110  Identities=12%  Similarity=-0.052  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531           80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  159 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~  159 (266)
                      ++.+..+..++..+...+++++|+..-.++.-+.....-...         .-....|.|++...+..+....|+..+.+
T Consensus       970 ~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds---------~~t~~~y~nlal~~f~~~~~~~al~~~~r 1040 (1236)
T KOG1839|consen  970 PEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDS---------PNTKLAYGNLALYEFAVKNLSGALKSLNR 1040 (1236)
T ss_pred             hhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCC---------HHHHHHhhHHHHHHHhccCccchhhhHHH
Confidence            456777788899999999999999987777654432111000         00223588999999999999999999988


Q ss_pred             HhcC--------CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024531          160 VLGE--------DENNVKALFRRGKARAELGQTDAAREDFLKAGKFA  198 (266)
Q Consensus       160 al~l--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~  198 (266)
                      ++.+        .|.-.-..-+++..+..+++++.|+++++.|+.++
T Consensus      1041 a~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1041 ALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred             HHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            8754        44445566788999999999999999999999865

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=86.23  E-value=5.9  Score=26.44  Aligned_cols=34  Identities=24%  Similarity=0.249  Sum_probs=28.3

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhcc
Q 024531           82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD  115 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~  115 (266)
                      .+..+...|...-+.|+|.+|+..|.++|+..-.
T Consensus         5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~   38 (77)
T cd02683           5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQ   38 (77)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            4566778888999999999999999999987643

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=86.20  E-value=3.6  Score=37.83  Aligned_cols=77  Identities=16%  Similarity=0.030  Sum_probs=64.8

Q ss_pred             hhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 024531          147 LKRYEEAIGQCSLVLGEDENNVKALFRRGKARAEL---GQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQK  223 (266)
Q Consensus       147 ~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~---g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~  223 (266)
                      ...+..|+.+|.+++...|.....+.+++.+++..   |+.-.|+.+.-.|++++|....++..|.++...+.+..++..
T Consensus       387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~  466 (758)
T KOG1310|consen  387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALS  466 (758)
T ss_pred             hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhh
Confidence            45678999999999999999999999999999986   456788899999999999988888888887766666655443

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=86.07  E-value=2.3  Score=38.60  Aligned_cols=65  Identities=17%  Similarity=0.189  Sum_probs=54.0

Q ss_pred             hhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 024531          137 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED  201 (266)
Q Consensus       137 ~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~  201 (266)
                      ..-+-....++++|+.|.....-.|.-.-.+++...-.+....++|-+++|.-++++++.++|..
T Consensus       360 ~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~  424 (831)
T PRK15180        360 LRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET  424 (831)
T ss_pred             HHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence            33455667789999999999998888777778877777777888999999999999999999853

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=85.92  E-value=6.4  Score=35.52  Aligned_cols=60  Identities=15%  Similarity=0.135  Sum_probs=50.4

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhH
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  160 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~a  160 (266)
                      .....+.|.-+|..|+|.++...-.-..+..|. +.                 +|..+|.|.+..++|.+|..++...
T Consensus       462 ian~LaDAEyLysqgey~kc~~ys~WL~~iaPS-~~-----------------~~RLlGl~l~e~k~Y~eA~~~l~~L  521 (549)
T PF07079_consen  462 IANFLADAEYLYSQGEYHKCYLYSSWLTKIAPS-PQ-----------------AYRLLGLCLMENKRYQEAWEYLQKL  521 (549)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCc-HH-----------------HHHHHHHHHHHHhhHHHHHHHHHhC
Confidence            455567888999999999999988888888884 33                 5889999999999999999998654

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=85.70  E-value=1.6  Score=32.93  Aligned_cols=49  Identities=22%  Similarity=0.140  Sum_probs=40.8

Q ss_pred             hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCH
Q 024531          136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQT  184 (266)
Q Consensus       136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~  184 (266)
                      .....|...+..|++..|...++.++..+|+|..+...++.++.++|.-
T Consensus        72 ~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~  120 (141)
T PF14863_consen   72 KVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ  120 (141)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence            4667888899999999999999999999999999999999998877654

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=85.53  E-value=2.8  Score=27.14  Aligned_cols=34  Identities=24%  Similarity=0.201  Sum_probs=28.8

Q ss_pred             HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhc
Q 024531           81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMG  114 (266)
Q Consensus        81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~  114 (266)
                      ..+-.+...|...-+.|+|.+|+..|.++++..-
T Consensus         3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~   36 (69)
T PF04212_consen    3 DKAIELIKKAVEADEAGNYEEALELYKEAIEYLM   36 (69)
T ss_dssp             HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            4566677888889999999999999999998753

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=85.34  E-value=3.4  Score=23.12  Aligned_cols=32  Identities=13%  Similarity=0.122  Sum_probs=24.1

Q ss_pred             HHHHHHhHHHHhhccHHHHHHHHH--HHHhhhcc
Q 024531           84 DRRKMDGNALFKEEKLEEAMQQYE--MAIAYMGD  115 (266)
Q Consensus        84 ~~~~~~g~~~~~~g~~~~A~~~y~--~al~~~~~  115 (266)
                      +.+...|-.++..|+|++|+..|+  -+..+++.
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~   35 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY   35 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence            456678999999999999999954  66666553

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=85.24  E-value=4.2  Score=34.40  Aligned_cols=64  Identities=16%  Similarity=0.041  Sum_probs=55.3

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531           82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  161 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al  161 (266)
                      ....+.+.+..+...|+++.++..+++.+..+|.+..                 ++..+-..|.+.|+...|+..|++.-
T Consensus       152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~-----------------~~~~lm~~y~~~g~~~~ai~~y~~l~  214 (280)
T COG3629         152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEP-----------------AYLRLMEAYLVNGRQSAAIRAYRQLK  214 (280)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchH-----------------HHHHHHHHHHHcCCchHHHHHHHHHH
Confidence            3556677888999999999999999999999998655                 58888899999999999999998765


Q ss_pred             c
Q 024531          162 G  162 (266)
Q Consensus       162 ~  162 (266)
                      .
T Consensus       215 ~  215 (280)
T COG3629         215 K  215 (280)
T ss_pred             H
Confidence            4

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=85.23  E-value=16  Score=28.60  Aligned_cols=93  Identities=12%  Similarity=0.067  Sum_probs=67.1

Q ss_pred             hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCC---chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHH
Q 024531          136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDEN---NVKALFRRGKARAELGQTDAAREDFLKAGKFAP--EDKSIARELRL  210 (266)
Q Consensus       136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~---~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p--~~~~~~~~l~~  210 (266)
                      ++..+|.-|.+.|+.+.|++.|.++......   ....++++-.+....++|......+.++-.+-.  ++.+.+..|..
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~  117 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV  117 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            6889999999999999999999998876433   246788889999999999999999999988643  34444433332


Q ss_pred             H----HHHHHHHHHHHHHHHhc
Q 024531          211 L----AEHEKAVYKKQKEIYKG  228 (266)
Q Consensus       211 l----~~~~~~~~~~~~~~~~k  228 (266)
                      .    .-.++.+..+.+....-
T Consensus       118 ~~gL~~l~~r~f~~AA~~fl~~  139 (177)
T PF10602_consen  118 YEGLANLAQRDFKEAAELFLDS  139 (177)
T ss_pred             HHHHHHHHhchHHHHHHHHHcc
Confidence            2    22244555555554433

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.21  E-value=33  Score=32.10  Aligned_cols=84  Identities=13%  Similarity=0.049  Sum_probs=48.6

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhh--hh-chh-----HHHHHHHhhhhhhhhHHHHHHHhhCHHHH
Q 024531           82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMF--QL-FGK-----YRDMALAVKNPCHLNMAACLLKLKRYEEA  153 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~--~~-~~~-----~~~~~~~l~~~~~~n~a~~~~~~~~~~~A  153 (266)
                      .++.+.+.+...-.+|+.+-|.....++|=........  .. .++     .......+ ..+++---..+.+.|.|.-|
T Consensus       283 HvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~F-yL~l~r~m~~l~~RGC~rTA  361 (665)
T KOG2422|consen  283 HVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQF-YLALFRYMQSLAQRGCWRTA  361 (665)
T ss_pred             chhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHH-HHHHHHHHHHHHhcCChHHH
Confidence            45666777777777777777777777776432110000  00 000     00011122 12233334556678999999


Q ss_pred             HHHHHhHhcCCCC
Q 024531          154 IGQCSLVLGEDEN  166 (266)
Q Consensus       154 ~~~~~~al~l~p~  166 (266)
                      .++|+-.+.+||.
T Consensus       362 ~E~cKlllsLdp~  374 (665)
T KOG2422|consen  362 LEWCKLLLSLDPS  374 (665)
T ss_pred             HHHHHHHhhcCCc
Confidence            9999999999997

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=85.18  E-value=15  Score=31.94  Aligned_cols=76  Identities=20%  Similarity=0.121  Sum_probs=58.1

Q ss_pred             hhhhHHHHHHHhhCHHHHHHHHHhHhcC--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024531          136 CHLNMAACLLKLKRYEEAIGQCSLVLGE--DENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL  211 (266)
Q Consensus       136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l  211 (266)
                      +-.|+|.+..+..-...++........-  =..+.-.+--+|..+.++|..++|...|++++.+.++..+......++
T Consensus       331 V~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r~  408 (415)
T COG4941         331 VTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQRL  408 (415)
T ss_pred             EeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence            4679999888888888888776555432  113445566789999999999999999999999999877766555443

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=85.15  E-value=10  Score=31.03  Aligned_cols=62  Identities=16%  Similarity=0.125  Sum_probs=54.4

Q ss_pred             HHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 024531          142 ACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKS  203 (266)
Q Consensus       142 ~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~  203 (266)
                      ..+++.+...+|+.....-++-.|.+......+=+.+.-.|+|++|..-++-+-+++|+...
T Consensus         9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~   70 (273)
T COG4455           9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV   70 (273)
T ss_pred             HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence            34567788999999999999999999888777888899999999999999999999998643

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.98  E-value=11  Score=34.42  Aligned_cols=99  Identities=18%  Similarity=0.048  Sum_probs=76.8

Q ss_pred             HHHHHHHhHHHH-hhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhh-CHHHHHHHHHhH
Q 024531           83 ADRRKMDGNALF-KEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK-RYEEAIGQCSLV  160 (266)
Q Consensus        83 ~~~~~~~g~~~~-~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~-~~~~A~~~~~~a  160 (266)
                      +..+.+.|..++ ...+++.|..++++|..+....+.+          .+.+-.++.-++.+|.... .+..|.....++
T Consensus        46 art~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~f----------ydvKf~a~SlLa~lh~~~~~s~~~~KalLrka  115 (629)
T KOG2300|consen   46 ARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSF----------YDVKFQAASLLAHLHHQLAQSFPPAKALLRKA  115 (629)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccH----------HhhhhHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence            556667776665 4678999999999998876554332          2234456888999999988 788999999999


Q ss_pred             hcCCCCch----HHHHHHHHHHHHcCCHHHHHHHH
Q 024531          161 LGEDENNV----KALFRRGKARAELGQTDAAREDF  191 (266)
Q Consensus       161 l~l~p~~~----~a~~~~g~~~~~~g~~~~A~~~~  191 (266)
                      +++....+    +..+.+++.+.-..++..|.+.+
T Consensus       116 ielsq~~p~wsckllfQLaql~~idkD~~sA~elL  150 (629)
T KOG2300|consen  116 IELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELL  150 (629)
T ss_pred             HHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHH
Confidence            99876654    56778899999999999888774

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=84.67  E-value=37  Score=32.29  Aligned_cols=154  Identities=13%  Similarity=0.045  Sum_probs=105.8

Q ss_pred             HHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCC
Q 024531           86 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDE  165 (266)
Q Consensus        86 ~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p  165 (266)
                      +...|..|-..|+.+.|-..|.+|....=....             -...++.+-|..-++..+++.|+...++|..+--
T Consensus       390 w~~faklYe~~~~l~~aRvifeka~~V~y~~v~-------------dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~  456 (835)
T KOG2047|consen  390 WVEFAKLYENNGDLDDARVIFEKATKVPYKTVE-------------DLAEVWCAWAEMELRHENFEAALKLMRRATHVPT  456 (835)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHhhcCCccchH-------------HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCC
Confidence            345677777888888888888888775322111             0233577778778888889999999988876522


Q ss_pred             C------------------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024531          166 N------------------NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYK  227 (266)
Q Consensus       166 ~------------------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~  227 (266)
                      .                  +.+.|-..+......|-++.....|.+++.+-=-.|.+.-+.+-..+..+-.+++-+. |.
T Consensus       457 ~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~-YE  535 (835)
T KOG2047|consen  457 NPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKA-YE  535 (835)
T ss_pred             chhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHH-HH
Confidence            1                  2455666677777888888888899999998888888888888776666666555555 55


Q ss_pred             cccCCCCCCcccchhHHHhHHHHHHHHHHH
Q 024531          228 GIFGPRPEPKQKKNWLIIFWQLLVSLVLGL  257 (266)
Q Consensus       228 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (266)
                      +-...-+-+...    .++-.||.-.|-++
T Consensus       536 rgI~LFk~p~v~----diW~tYLtkfi~ry  561 (835)
T KOG2047|consen  536 RGISLFKWPNVY----DIWNTYLTKFIKRY  561 (835)
T ss_pred             cCCccCCCccHH----HHHHHHHHHHHHHh
Confidence            554554544433    44467777666544

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=84.67  E-value=2.9  Score=27.78  Aligned_cols=33  Identities=24%  Similarity=0.323  Sum_probs=28.3

Q ss_pred             HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhh
Q 024531           81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYM  113 (266)
Q Consensus        81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~  113 (266)
                      ..+..+-.++..+-+.|++.+|+..|+++++..
T Consensus         4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L   36 (75)
T cd02682           4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVL   36 (75)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            456677788999999999999999999999865

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=84.43  E-value=7.9  Score=26.04  Aligned_cols=65  Identities=11%  Similarity=0.042  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhh----hhchhHHHHHHHhhhhhhhhHHHHH
Q 024531           80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMF----QLFGKYRDMALAVKNPCHLNMAACL  144 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~----~~~~~~~~~~~~l~~~~~~n~a~~~  144 (266)
                      .+.+-...+.|..+-..|+.+.|+..|.+++...-.....    ...++.++....+..+.-.+++.+-
T Consensus         5 ~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~~~~v~   73 (79)
T cd02679           5 YKQAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNLNMVK   73 (79)
T ss_pred             HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHHHHHHH
Confidence            3456667788888888899999999999999876442221    2244445555554444444444443

This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.

>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=83.79  E-value=5.6  Score=26.41  Aligned_cols=36  Identities=14%  Similarity=0.072  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhcc
Q 024531           80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD  115 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~  115 (266)
                      +..+-.+..+|...-..|+|++|+..|..+|+..-.
T Consensus         3 l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~   38 (75)
T cd02684           3 LEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVP   38 (75)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            345667778888899999999999999999987643

This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=83.76  E-value=11  Score=36.87  Aligned_cols=83  Identities=22%  Similarity=0.197  Sum_probs=59.7

Q ss_pred             hhhhHHHHHHHhhCHHHHHHHHHhH----------hcCCCC----------chHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024531          136 CHLNMAACLLKLKRYEEAIGQCSLV----------LGEDEN----------NVKALFRRGKARAELGQTDAAREDFLKAG  195 (266)
Q Consensus       136 ~~~n~a~~~~~~~~~~~A~~~~~~a----------l~l~p~----------~~~a~~~~g~~~~~~g~~~~A~~~~~~al  195 (266)
                      .|+|.|.-+-..++-+.|+++|+++          |.-+|.          +...|-+.|+-+...|+.+.|+..|..|-
T Consensus       860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~  939 (1416)
T KOG3617|consen  860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK  939 (1416)
T ss_pred             hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence            5888999888899999999999864          333553          34556678999999999999999998775


Q ss_pred             hh---------------------CCCCHHHHHHHHHHHHHHHHH
Q 024531          196 KF---------------------APEDKSIARELRLLAEHEKAV  218 (266)
Q Consensus       196 ~l---------------------~p~~~~~~~~l~~l~~~~~~~  218 (266)
                      ..                     +..|..+-.+|++-++..++.
T Consensus       940 D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v  983 (1416)
T KOG3617|consen  940 DYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDV  983 (1416)
T ss_pred             hhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHH
Confidence            42                     234556666666655544443

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=83.53  E-value=2  Score=25.32  Aligned_cols=27  Identities=22%  Similarity=0.281  Sum_probs=24.3

Q ss_pred             hhhHHHHHHHhhCHHHHHHHHHhHhcC
Q 024531          137 HLNMAACLLKLKRYEEAIGQCSLVLGE  163 (266)
Q Consensus       137 ~~n~a~~~~~~~~~~~A~~~~~~al~l  163 (266)
                      -+++|.+|+.+|+.+.|...++.++.-
T Consensus         2 kLdLA~ayie~Gd~e~Ar~lL~evl~~   28 (44)
T TIGR03504         2 KLDLARAYIEMGDLEGARELLEEVIEE   28 (44)
T ss_pred             chHHHHHHHHcCChHHHHHHHHHHHHc
Confidence            358999999999999999999999953

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=82.99  E-value=4.4  Score=32.45  Aligned_cols=78  Identities=10%  Similarity=0.047  Sum_probs=51.7

Q ss_pred             HHHHHHhhCHHHHHHHHHhHhcCCC--CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHH
Q 024531          141 AACLLKLKRYEEAIGQCSLVLGEDE--NNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE----DKSIARELRLLAEH  214 (266)
Q Consensus       141 a~~~~~~~~~~~A~~~~~~al~l~p--~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~----~~~~~~~l~~l~~~  214 (266)
                      ..-+...-.-..|...|-++-. .|  +++...+.+|.-|. .-+-++|+..+.++|++.+.    |+++...|+.+...
T Consensus       113 lYy~Wsr~~d~~A~~~fL~~E~-~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~  190 (203)
T PF11207_consen  113 LYYHWSRFGDQEALRRFLQLEG-TPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK  190 (203)
T ss_pred             HHHHhhccCcHHHHHHHHHHcC-CCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence            3333344344667776654432 22  45777777776554 77888899999999988664    58888888888776


Q ss_pred             HHHHHH
Q 024531          215 EKAVYK  220 (266)
Q Consensus       215 ~~~~~~  220 (266)
                      +++.+.
T Consensus       191 ~~~~e~  196 (203)
T PF11207_consen  191 LKNYEQ  196 (203)
T ss_pred             hcchhh
Confidence            666543

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=82.35  E-value=17  Score=36.38  Aligned_cols=67  Identities=24%  Similarity=0.165  Sum_probs=51.9

Q ss_pred             hhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHH-------HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 024531          137 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKA-------LFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIA  205 (266)
Q Consensus       137 ~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a-------~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~  205 (266)
                      |...|.+|..+|+|.+-++.+.-|++-.|+++..       .|++-.+.+..  -..|....--++...|......
T Consensus       555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  628 (932)
T PRK13184        555 YLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKH--RREALVFMLLALWIAPEKISSR  628 (932)
T ss_pred             HHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhCcccccch
Confidence            7888999999999999999999999999988753       44555444433  3457788888888999765443

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.34  E-value=26  Score=32.78  Aligned_cols=122  Identities=20%  Similarity=0.078  Sum_probs=79.9

Q ss_pred             HHHhHHHHh---hccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh--
Q 024531           87 KMDGNALFK---EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL--  161 (266)
Q Consensus        87 ~~~g~~~~~---~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al--  161 (266)
                      .+.|..+|.   .+-|.+|...|.-+....+..........     ....+..+..+|.++...|+.+-|-....++|  
T Consensus       239 sq~~isfF~~~hs~sYeqaq~~F~~av~~~d~n~v~~lL~s-----sPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~  313 (665)
T KOG2422|consen  239 SQKGISFFKFEHSNSYEQAQRDFYLAVIVHDPNNVLILLIS-----SPYHVDSLLQVADIFRFQGDREMAADLIERGLYV  313 (665)
T ss_pred             ccCceeEEEeecchHHHHHHHHHHHHHhhcCCcceeeeecc-----CCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence            456666665   45688999988888776543211100000     12234457788999999998776666555554  


Q ss_pred             -----cC--------------CCCc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH
Q 024531          162 -----GE--------------DENN---VKALFRRGKARAELGQTDAAREDFLKAGKFAPE-DKSIARELRLLAE  213 (266)
Q Consensus       162 -----~l--------------~p~~---~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~l~~l~~  213 (266)
                           .-              .|.|   ..++|+--+.+.+.|.+..|.++++-.++++|. ||-+...+-.+..
T Consensus       314 ~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~A  388 (665)
T KOG2422|consen  314 FDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYA  388 (665)
T ss_pred             HHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHH
Confidence                 11              1222   346777778888999999999999999999998 7755544444433

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=82.28  E-value=29  Score=30.88  Aligned_cols=100  Identities=17%  Similarity=0.164  Sum_probs=62.1

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHH--hhCHHHHHHHHHhH
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLK--LKRYEEAIGQCSLV  160 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~--~~~~~~A~~~~~~a  160 (266)
                      ......++..+|+.++|..|...+...+...|....+               ..+..++.+|..  .-++.+|.+.++..
T Consensus       131 ~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~---------------~~~~~l~~~y~~WD~fd~~~A~~~l~~~  195 (379)
T PF09670_consen  131 GDREWRRAKELFNRYDYGAAARILEELLRRLPGREEY---------------QRYKDLCEGYDAWDRFDHKEALEYLEKL  195 (379)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhH---------------HHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            4566778899999999999999999998864432211               134444444433  44566776666654


Q ss_pred             hcCCC------------------------------C---c-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024531          161 LGEDE------------------------------N---N-----VKALFRRGKARAELGQTDAAREDFLKAGKF  197 (266)
Q Consensus       161 l~l~p------------------------------~---~-----~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  197 (266)
                      +..+-                              .   .     ..-++.-|.=-...|+|+.|+.-+-+++++
T Consensus       196 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl  270 (379)
T PF09670_consen  196 LKRDKALNQEREGLKELVEVLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALEL  270 (379)
T ss_pred             HHHhhhhHhHHHHHHHHHHHHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            43210                              0   0     011222233334688899999999999886

>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=82.27  E-value=3.7  Score=27.32  Aligned_cols=35  Identities=17%  Similarity=0.058  Sum_probs=28.8

Q ss_pred             HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhcc
Q 024531           81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD  115 (266)
Q Consensus        81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~  115 (266)
                      +.+-.+...|...-..|+|++|+..|..+++.+-.
T Consensus         4 ~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~   38 (75)
T cd02680           4 ERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN   38 (75)
T ss_pred             HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence            34566677788888899999999999999998643

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=81.75  E-value=2.4  Score=28.29  Aligned_cols=17  Identities=18%  Similarity=0.157  Sum_probs=9.2

Q ss_pred             HcCCHHHHHHHHHHHHh
Q 024531          180 ELGQTDAAREDFLKAGK  196 (266)
Q Consensus       180 ~~g~~~~A~~~~~~al~  196 (266)
                      ..|+|++|+.+|+.+++
T Consensus        18 ~~g~y~eA~~~Y~~aie   34 (76)
T cd02681          18 QEGRYSEAVFYYKEAAQ   34 (76)
T ss_pred             HccCHHHHHHHHHHHHH
Confidence            45555555555555544

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=81.53  E-value=13  Score=24.68  Aligned_cols=59  Identities=20%  Similarity=0.175  Sum_probs=31.4

Q ss_pred             HHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------hCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 024531          151 EEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGK-------FAPEDKSIARELRLLAEHEKAVYKKQK  223 (266)
Q Consensus       151 ~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~-------l~p~~~~~~~~l~~l~~~~~~~~~~~~  223 (266)
                      .+|+..+.+|++.|               ..|+|++|..+|..++.       .+ .|+..+..+.   .+..++.....
T Consensus         4 ~~A~~l~~~Ave~d---------------~~~~y~eA~~~Y~~~i~~~~~~~k~e-~~~~~k~~ir---~K~~eYl~RAE   64 (75)
T cd02677           4 EQAAELIRLALEKE---------------EEGDYEAAFEFYRAGVDLLLKGVQGD-SSPERREAVK---RKIAEYLKRAE   64 (75)
T ss_pred             HHHHHHHHHHHHHH---------------HHhhHHHHHHHHHHHHHHHHHHhccC-CCHHHHHHHH---HHHHHHHHHHH
Confidence            45555555665544               33666666666666555       34 3444443333   55566666555


Q ss_pred             HHHhc
Q 024531          224 EIYKG  228 (266)
Q Consensus       224 ~~~~k  228 (266)
                      +++..
T Consensus        65 ~i~~~   69 (75)
T cd02677          65 EILRL   69 (75)
T ss_pred             HHHHH
Confidence            55543

This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.43  E-value=34  Score=33.77  Aligned_cols=125  Identities=15%  Similarity=0.074  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhh-hhhHHHHH----HHh--hCHHH
Q 024531           80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPC-HLNMAACL----LKL--KRYEE  152 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~-~~n~a~~~----~~~--~~~~~  152 (266)
                      ........+.|-.+...|+|.+|++.|..+|-..|--...  ..+...+.+++...+ -+-.|...    .++  .....
T Consensus       988 l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd--~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~ 1065 (1202)
T KOG0292|consen  988 LSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVD--SKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQ 1065 (1202)
T ss_pred             HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEec--chhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHH
Confidence            5667777789999999999999999999999887742211  011111222222112 11112111    111  12333


Q ss_pred             H--HHHHHhHhcCCCCch-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 024531          153 A--IGQCSLVLGEDENNV-KALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIAR  206 (266)
Q Consensus       153 A--~~~~~~al~l~p~~~-~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~  206 (266)
                      +  +..|=.-..+.|.+. -++...-.++++++++..|-..-.+.+++.|..+.+..
T Consensus      1066 ~~ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q 1122 (1202)
T KOG0292|consen 1066 QLELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQ 1122 (1202)
T ss_pred             HHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHH
Confidence            3  222323346666543 45555567889999999999999999999998776654

>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=80.47  E-value=5.1  Score=26.52  Aligned_cols=34  Identities=21%  Similarity=0.216  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhh
Q 024531           80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYM  113 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~  113 (266)
                      +..+..+...|...-..|+|++|+..|..+++..
T Consensus         3 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l   36 (75)
T cd02678           3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALEYF   36 (75)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            3456777888888999999999999999999875

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	266
2if4_A	338	Crystal Structure Of A Multi-Domain Immunophilin Fr		1e-111
2f4e_A	180	N-Terminal Domain Of Fkbp42 From Arabidopsis Thalia		5e-37
1qz2_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Compl		8e-22
1p5q_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Lengt		3e-19
1kt0_A	457	Structure Of The Large Fkbp-like Protein, Fkbp51, I		2e-18
1kt1_A	457	Structure Of The Large Fkbp-Like Protein, Fkbp51, I		2e-18
2fbn_A	198	Plasmodium Falciparum Putative Fk506-Binding Protei		2e-16
4apo_A	165	Aip Tpr Domain In Complex With Human Tomm20 Peptide		6e-13
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		4e-12
4aif_A	144	Aip Tpr Domain In Complex With Human Hsp90 Peptide		1e-10
3rkv_A	162	C-Terminal Domain Of Protein C56c10.10, A Putative		5e-10
2dba_A	148	The Solution Structure Of The Tetratrico Peptide Re		1e-06

>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From Arabidopsis Thaliana Length = 338

Iteration: 1
 Score =  399 bits (1025), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 190/235 (80%), Positives = 217/235 (92%)
Query: 1   MVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 60
           +VLGKEKKE+ GLAIGV+SMK+GE AL+HVGWEL YGKEG+FSFPNV PMADL+YEV +I
Sbjct: 97  LVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVI 156
Query: 61  GFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQ 120
           GFDETKEGKARSDMTVEERIGAADRRKMDGN+LFKEEKLEEAMQQYEMAIAYMGDDFMFQ
Sbjct: 157 GFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQ 216
Query: 121 LFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAE 180
           L+GKY+DMALAVKNPCHLN+AACL+KLKRY+EAIG C++VL E+E N KALFRRGKA+AE
Sbjct: 217 LYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAE 276
Query: 181 LGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPE 235
           LGQ D+AR+DF KA K+AP+DK+I RELR LAE EKA+Y+KQKE+YKGIF  + E
Sbjct: 277 LGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDE 331

>pdb|2F4E|A Chain A, N-Terminal Domain Of Fkbp42 From Arabidopsis Thaliana Length = 180

Iteration: 1
 Score =  151 bits (381), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 71/84 (84%), Positives = 79/84 (94%)
Query: 1   MVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 60
           +VLGKEKKE+ GLAIGV+SMK+GE AL+HVGWEL YGKEG+FSFPNV PMADL+YEV +I
Sbjct: 97  LVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVI 156
Query: 61  GFDETKEGKARSDMTVEERIGAAD 84
           GFDETKEGKARSDMTVEERIGAAD
Sbjct: 157 GFDETKEGKARSDMTVEERIGAAD 180

>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With The C-Terminal Peptide Meevd Of Hsp90 Length = 336

Iteration: 1
 Score =  100 bits (249), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 114/219 (52%), Gaps = 6/219 (2%)
Query: 12  GLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKAR 71
           GL   +  M+ GEH+++++     +G  G   F  + P A+L YE+ L  F++ KE    
Sbjct: 80  GLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKF-QIPPNAELKYELHLKSFEKAKES--- 135
Query: 72  SDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALA 131
            +M  EE++  +   K  G   FKE K ++A+ QY+  ++++  ++      +    A A
Sbjct: 136 WEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQA 193
Query: 132 VKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDF 191
           ++   HLN+A C LKL+ +  AI  C+  L  D NN K LFRRG+A   +   + AR DF
Sbjct: 194 LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADF 253
Query: 192 LKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIF 230
            K  +  P +K+   +L +  +  +    ++K++Y  +F
Sbjct: 254 QKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292

>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Length = 336

Iteration: 1
 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 111/219 (50%), Gaps = 6/219 (2%)
Query: 12  GLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKAR 71
           GL   +   + GEH+++++     +G  G   F  + P A+L YE+ L  F++ KE    
Sbjct: 80  GLERAIQRXEKGEHSIVYLKPSYAFGSVGKEKF-QIPPNAELKYELHLKSFEKAKES--- 135
Query: 72  SDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALA 131
            +   EE++  +   K  G   FKE K ++A+ QY+  ++++  ++      +    A A
Sbjct: 136 WEXNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQA 193
Query: 132 VKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDF 191
           ++   HLN+A C LKL+ +  AI  C+  L  D NN K L RRG+A   +   + AR DF
Sbjct: 194 LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADF 253
Query: 192 LKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIF 230
            K  +  P +K+   +L +  +  +    ++K++Y  +F
Sbjct: 254 QKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292

>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 113/219 (51%), Gaps = 6/219 (2%)
Query: 12  GLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKAR 71
           G+   +  M+  E  +L++G   G+G+ G   F  + P A+L+YEV L  F++ KE    
Sbjct: 201 GIDKALEKMQREEQCILYLGPRYGFGEAGKPKF-GIEPNAELIYEVTLKSFEKAKES--- 256
Query: 72  SDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALA 131
            +M  +E++  A   K  G   FK  K  +A+ QY   ++++  +  + L  K    + +
Sbjct: 257 WEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASES 314
Query: 132 VKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDF 191
                 LN+A C LKL+ Y +A+  C   LG D  N K L+RRG+A+  + + ++A+ DF
Sbjct: 315 FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDF 374
Query: 192 LKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIF 230
            K  +  P++K+   ++ +  +  K   ++ + IY  +F
Sbjct: 375 EKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413

>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 112/219 (51%), Gaps = 6/219 (2%)
Query: 12  GLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKAR 71
           G+   +  M+  E  +LH+G   G+G+ G   F  + P A+L+YEV L  F++ KE    
Sbjct: 201 GIDKALEKMQREEQCILHLGPRYGFGEAGKPKF-GIEPNAELIYEVTLKSFEKAKES--- 256
Query: 72  SDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALA 131
            +M  +E++  A   K  G   FK  K  +A+ QY   ++++  +  + L  K    + +
Sbjct: 257 WEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWL--EMEYGLSEKESKASES 314
Query: 132 VKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDF 191
                 LN+A C LKL+ Y +A+  C   LG D  N K L+RRG+A+  + + ++A+ DF
Sbjct: 315 FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDF 374
Query: 192 LKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIF 230
            K  +  P++K+   ++ +  +  K   ++ +  Y  +F
Sbjct: 375 EKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMF 413

>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein Pfl2275c, C-Terminal Tpr-Containing Domain Length = 198

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 92/178 (51%), Gaps = 11/178 (6%)
Query: 69  KARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYM-----GDDFMFQLFG 123
           K+  D T EE++ +A   K +GN  FK+ ++ EA+ +Y+ A+ +       DD +  L  
Sbjct: 24  KSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQI--LLD 81
Query: 124 KYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQ 183
           K +++ ++    C+LN+A C  K K Y +AI   S VL  D+NNVKAL++ G A    G 
Sbjct: 82  KKKNIEIS----CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGF 137
Query: 184 TDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKKN 241
            + A+E+  KA    P +  I     L     K   KK K  + G+F   P  ++KKN
Sbjct: 138 LEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKGPLYEEKKN 195

>pdb|4APO|A Chain A, Aip Tpr Domain In Complex With Human Tomm20 Peptide Length = 165

Iteration: 1
 Score = 71.2 bits (173), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 82/160 (51%), Gaps = 2/160 (1%)
Query: 74  MTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVK 133
           MT EE+  A      +GN L++E  ++EA  +Y  AIA + +  M +  G    + L  +
Sbjct: 5   MTAEEKAKAVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQ 64
Query: 134 -NPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFL 192
             P  LN   C L ++ Y E +  CS +L + ++NVKA F+RGKA A +     A+ DF 
Sbjct: 65  ITPLLLNYCQCKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFA 124
Query: 193 KAGKFAPE-DKSIARELRLLAEHEKAVYKKQKEIYKGIFG 231
           K  +  P     ++REL+ L    +   ++ K  ++GIF 
Sbjct: 125 KVLELDPALAPVVSRELQALEARIRQKDEEDKARFRGIFS 164

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/144 (34%), Positives = 74/144 (51%), Gaps = 7/144 (4%)
Query: 90  GNALFKEEKLEEAMQQYEMAIAYM-GDDFMFQLF--GKYRDMALAVKNPCHLNMAACLLK 146
           GN  FK +  E A+++Y   + Y+ G     +     K + +AL+    C LN+ AC LK
Sbjct: 230 GNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALS----CVLNIGACKLK 285
Query: 147 LKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIAR 206
           +  ++ A+  C   L  D +N KAL+RR +    L + D A  D  KA + APEDK+I  
Sbjct: 286 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQA 345
Query: 207 ELRLLAEHEKAVYKKQKEIYKGIF 230
           EL  + +  KA   K+K  Y  +F
Sbjct: 346 ELLKVKQKIKAQKDKEKAAYAKMF 369

>pdb|4AIF|A Chain A, Aip Tpr Domain In Complex With Human Hsp90 Peptide Length = 144

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 2/137 (1%)
Query: 77  EERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVK-NP 135
           EE+  A      +GN L++E  ++EA  +Y  AIA + +  M +  G    + L  +  P
Sbjct: 2   EEKAKAVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQITP 61
Query: 136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAG 195
             LN   C L ++ Y E +  CS +L + ++NVKA F+RGKA A +     A+ DF K  
Sbjct: 62  LLLNYCQCKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVL 121
Query: 196 KFAPE-DKSIARELRLL 211
           +  P     ++REL+ L
Sbjct: 122 ELDPALAPVVSRELQAL 138

>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative Peptidylprolyl Isomerase, From Caenorhabditis Elegans Length = 162

Iteration: 1
 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 69/145 (47%), Gaps = 2/145 (1%)
Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKN-PCHLNMAACLLKLK 148
           GN LF ++  +EA+  Y  A+  +    + +  G+   + L  KN P + NM+ C L + 
Sbjct: 18  GNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIG 77
Query: 149 RYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKS-IARE 207
              EA    S VL  +E N KALFRR KAR    + D A ED     +  P   S +ARE
Sbjct: 78  DLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVARE 137
Query: 208 LRLLAEHEKAVYKKQKEIYKGIFGP 232
           ++++ E         +  Y  +F P
Sbjct: 138 MKIVTERRAEKKADSRVTYSKMFQP 162

>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of Human Smooth Muscle Cell Associated Protein-1, Isoform 2 Length = 148

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 14/126 (11%)
Query: 87  KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLK 146
           + +GN LFK      A+  Y  A+          L    +D A+      H N AAC LK
Sbjct: 32  RKEGNELFKCGDYGGALAAYTQALG---------LDATPQDQAV-----LHRNRAACHLK 77
Query: 147 LKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIAR 206
           L+ Y++A  + S  + +D  +VKAL+RR +A  +LG+ D A  D  +     P++K    
Sbjct: 78  LEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQE 137
Query: 207 ELRLLA 212
            LR ++
Sbjct: 138 ALRNIS 143

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	266
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	4e-73
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	1e-62
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	3e-62
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	1e-05
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	2e-51
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	7e-49
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	4e-37
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	1e-28
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	6e-26
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	8e-22
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	1e-21
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	3e-21
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	4e-21
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	6e-21
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	6e-21
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	4e-20
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	6e-20
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	1e-19
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-19
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-16
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	6e-13
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	9e-12
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	9e-10
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-17
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-15
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-12
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-11
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	7e-06
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	2e-16
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	4e-16
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	5e-16
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-15
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-14
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	9e-10
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	6e-08
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-05
2l6j_A	111	TPR repeat-containing protein associated with HSP;	8e-15
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	7e-14
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	7e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-13
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-11
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	8e-11
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	8e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	8e-13
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-12
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-04
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	9e-13
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	1e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-12
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	8e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	6e-12
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-09
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	7e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-04
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	7e-12
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	9e-06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	9e-12
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-07
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	6e-05
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-11
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	4e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-11
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-10
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	8e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	7e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	8e-06
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	3e-11
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	1e-05
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	3e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	9e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-09
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-07
3u4t_A	272	TPR repeat-containing protein; structural genomics	9e-11
3u4t_A	272	TPR repeat-containing protein; structural genomics	6e-10
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-06
3u4t_A	272	TPR repeat-containing protein; structural genomics	6e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	6e-05
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	9e-11
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	1e-08
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-10
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	7e-10
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-10
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-09
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-08
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-06
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	1e-09
2kat_A	115	Uncharacterized protein; NESG, structure, structur	3e-09
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	5e-09
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	7e-09
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	6e-09
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-08
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-05
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	6e-09
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	9e-06
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	4e-05
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	8e-09
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-06
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	5e-05
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	7e-05
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	1e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	7e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-05
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-08
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	3e-07
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	7e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	3e-08
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	7e-04
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	3e-08
3k9i_A	117	BH0479 protein; putative protein binding protein,	4e-08
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	4e-08
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	4e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	5e-08
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-07
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-07
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-04
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	9e-08
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	9e-08
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	8e-07
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	1e-07
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-07
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-07
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	7e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-07
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	6e-07
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	6e-07
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	4e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-07
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	2e-07
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	2e-04
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	2e-07
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	1e-06
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	7e-06
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	1e-05
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-05
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-05
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	3e-04
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	2e-05
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	3e-05
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	4e-05
2ppn_A	107	FK506-binding protein 1A; high resolution protein	4e-05
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	5e-05
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	5e-05
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	7e-05
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	7e-05
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	1e-04
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	1e-04
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	2e-04
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	4e-04
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	6e-04
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	9e-04

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score =  226 bits (576), Expect = 4e-73
 Identities = 191/241 (79%), Positives = 218/241 (90%)

Query: 1   MVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 60
           +VLGKEKKE+ GLAIGV+SMK+GE AL+HVGWEL YGKEG+FSFPNV PMADL+YEV +I
Sbjct: 97  LVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVI 156

Query: 61  GFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQ 120
           GFDETKEGKARSDMTVEERIGAADRRKMDGN+LFKEEKLEEAMQQYEMAIAYMGDDFMFQ
Sbjct: 157 GFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQ 216

Query: 121 LFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAE 180
           L+GKY+DMALAVKNPCHLN+AACL+KLKRY+EAIG C++VL E+E N KALFRRGKA+AE
Sbjct: 217 LYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAE 276

Query: 181 LGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKK 240
           LGQ D+AR+DF KA K+AP+DK+I RELR LAE EKA+Y+KQKE+YKGIF  + E   K 
Sbjct: 277 LGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGAKS 336

Query: 241 N 241
            
Sbjct: 337 K 337

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score =  199 bits (507), Expect = 1e-62
 Identities = 68/238 (28%), Positives = 118/238 (49%), Gaps = 6/238 (2%)

Query: 4   GKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD 63
           G+      GL   +  M+ GEH+++++     +G  G   F  + P A+L YE+ L  F+
Sbjct: 72  GENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKF-QIPPNAELKYELHLKSFE 130

Query: 64  ETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFG 123
           + KE     +M  EE++  +   K  G   FKE K ++A+ QY+  ++++  +  F    
Sbjct: 131 KAKE---SWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS--N 185

Query: 124 KYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQ 183
           +    A A++   HLN+A C LKL+ +  AI  C+  L  D NN K L RRG+A   +  
Sbjct: 186 EEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVND 245

Query: 184 TDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKKN 241
            + AR DF K  +  P +K+   +L +  +  +    ++K++Y  +F    E + K  
Sbjct: 246 FELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAK 303

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score =  201 bits (513), Expect = 3e-62
 Identities = 65/240 (27%), Positives = 120/240 (50%), Gaps = 6/240 (2%)

Query: 1   MVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 60
           +  G++     G+   +  M+  E  +L++G   G+G+ G   F  + P A+L+YEV L 
Sbjct: 190 VGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKF-GIEPNAELIYEVTLK 248

Query: 61  GFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQ 120
            F++ KE     +M  +E++  A   K  G   FK  K  +A+ QY   ++++  +  + 
Sbjct: 249 SFEKAKE---SWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYG 303

Query: 121 LFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAE 180
           L  K    + +      LN+A C LKL+ Y +A+  C   LG D  N K L+RRG+A+  
Sbjct: 304 LSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLL 363

Query: 181 LGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKK 240
           + + ++A+ DF K  +  P++K+   ++ +  +  K   ++ + IY  +F    E   K+
Sbjct: 364 MNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFKKFAEQDAKE 423

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 45.1 bits (106), Expect = 1e-05
 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 2/79 (2%)

Query: 12  GLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKAR 71
              IGV++MK GE   L    E  YG  G  S P +   A L +E+ L+ F      +  
Sbjct: 89  AWDIGVATMKRGEICHLLCKPEYAYGSAG--SLPKIPSNATLFFEIELLDFKGEDLFEDG 146

Query: 72  SDMTVEERIGAADRRKMDG 90
             +   +R G       +G
Sbjct: 147 GIIRRTKRKGEGYSNPNEG 165

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score =  165 bits (420), Expect = 2e-51
 Identities = 58/183 (31%), Positives = 89/183 (48%), Gaps = 3/183 (1%)

Query: 59  LIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM 118
            + F   K  K+  D T EE++ +A   K +GN  FK+ ++ EA+ +Y+ A+ +      
Sbjct: 16  NLYFQGAK--KSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEE 73

Query: 119 FQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKAR 178
           +       D    ++  C+LN+A C  K K Y +AI   S VL  D+NNVKAL++ G A 
Sbjct: 74  WD-DQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVAN 132

Query: 179 AELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQ 238
              G  + A+E+  KA    P +  I     L     K   KK K  + G+F   P  ++
Sbjct: 133 MYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKGPLYEE 192

Query: 239 KKN 241
           KKN
Sbjct: 193 KKN 195

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score =  157 bits (400), Expect = 7e-49
 Identities = 44/161 (27%), Positives = 74/161 (45%), Gaps = 2/161 (1%)

Query: 74  MTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMAL-AV 132
              ++++ + +  +  GN LF ++  +EA+  Y  A+  +    + +  G+   + L   
Sbjct: 2   NAEDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRK 61

Query: 133 KNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFL 192
             P + NM+ C L +    EA    S VL  +E N KALFRR KAR    + D A ED  
Sbjct: 62  NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLK 121

Query: 193 KAGKFAPEDKS-IARELRLLAEHEKAVYKKQKEIYKGIFGP 232
              +  P   S +ARE++++ E         +  Y  +F P
Sbjct: 122 LLLRNHPAAASVVAREMKIVTERRAEKKADSRVTYSKMFQP 162

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score =  133 bits (337), Expect = 4e-37
 Identities = 48/159 (30%), Positives = 75/159 (47%), Gaps = 1/159 (0%)

Query: 73  DMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAV 132
              V++ +  ++  K  GN  FK +  E A+++Y   + Y+ +                V
Sbjct: 213 LKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV-EGSRAAAEDADGAKLQPV 271

Query: 133 KNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFL 192
              C LN+ AC LK+  ++ A+  C   L  D +N KAL+RR +    L + D A  D  
Sbjct: 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLK 331

Query: 193 KAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFG 231
           KA + APEDK+I  EL  + +  KA   K+K  Y  +F 
Sbjct: 332 KAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAYAKMFA 370

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score =  105 bits (264), Expect = 1e-28
 Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 14/133 (10%)

Query: 77  EERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPC 136
                + ++ + +GN LFK      A+  Y  A+                D     +   
Sbjct: 22  TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGL--------------DATPQDQAVL 67

Query: 137 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGK 196
           H N AAC LKL+ Y++A  + S  + +D  +VKAL+RR +A  +LG+ D A  D  +   
Sbjct: 68  HRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVS 127

Query: 197 FAPEDKSIARELR 209
             P++K     LR
Sbjct: 128 LEPKNKVFQEALR 140

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana} Length = 180

 Score = 99.5 bits (248), Expect = 6e-26
 Identities = 71/84 (84%), Positives = 79/84 (94%)

Query: 1   MVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 60
           +VLGKEKKE+ GLAIGV+SMK+GE AL+HVGWEL YGKEG+FSFPNV PMADL+YEV +I
Sbjct: 97  LVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVI 156

Query: 61  GFDETKEGKARSDMTVEERIGAAD 84
           GFDETKEGKARSDMTVEERIGAAD
Sbjct: 157 GFDETKEGKARSDMTVEERIGAAD 180

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 86.9 bits (216), Expect = 8e-22
 Identities = 26/127 (20%), Positives = 47/127 (37%), Gaps = 17/127 (13%)

Query: 83  ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAA 142
           A   K  GN  FK+     AM+ Y  A+    ++ +                  + N AA
Sbjct: 13  AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAIL-----------------YSNRAA 55

Query: 143 CLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK 202
           CL KL  ++ A+  C   +  D   +K   R+      + +   A+  +  A +  P ++
Sbjct: 56  CLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNE 115

Query: 203 SIARELR 209
                +R
Sbjct: 116 EAREGVR 122

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 87.0 bits (216), Expect = 1e-21
 Identities = 36/150 (24%), Positives = 57/150 (38%), Gaps = 19/150 (12%)

Query: 77  EERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPC 136
             +  +A   K  GN LF   K  EA   Y  AI       ++                 
Sbjct: 3   HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVY----------------- 45

Query: 137 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGK 196
           + N A C LK+++ E+A+  C   L  D  +VKA F  G+ + E+   D A  +  +A  
Sbjct: 46  YTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYS 105

Query: 197 FAPEDKSIARE--LRLLAEHEKAVYKKQKE 224
            A E +    +     L   +K  +   +E
Sbjct: 106 LAKEQRLNFGDDIPSALRIAKKKRWNSIEE 135

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 86.7 bits (215), Expect = 3e-21
 Identities = 34/154 (22%), Positives = 60/154 (38%), Gaps = 20/154 (12%)

Query: 71  RSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMAL 130
           R +   +  +  A+  K   N  FK +  E A++ Y  AI     + ++           
Sbjct: 1   RDEPPADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIY----------- 49

Query: 131 AVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAARED 190
                 + N +   L+ + Y  A+G  +  +  D+  +K  +RR  +   LG+  AA  D
Sbjct: 50  ------YGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRD 103

Query: 191 FLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKE 224
           +    K  P DK    + +   E  K V +K  E
Sbjct: 104 YETVVKVKPHDKDAKMKYQ---ECNKIVKQKAFE 134

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 85.0 bits (211), Expect = 4e-21
 Identities = 28/140 (20%), Positives = 53/140 (37%), Gaps = 18/140 (12%)

Query: 83  ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAA 142
           A+  +++G   F +     A++ Y   I    +D                    + N AA
Sbjct: 4   AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARG-----------------YSNRAA 46

Query: 143 CLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK 202
            L KL  + EAI  C+  + +D N V+A  R+  A+  + +  +A E    A     E  
Sbjct: 47  ALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN 106

Query: 203 SIARELRLLAEHEKAVYKKQ 222
           +     R + +      +++
Sbjct: 107 N-GSSAREIDQLYYKASQQR 125

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 84.5 bits (210), Expect = 6e-21
 Identities = 20/127 (15%), Positives = 42/127 (33%), Gaps = 17/127 (13%)

Query: 83  ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAA 142
            +  K  GN       +++A+Q Y  AI     + +                  + N +A
Sbjct: 4   VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVL-----------------YSNRSA 46

Query: 143 CLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK 202
              K   Y++A       +    +  K   R+  A   L + + A+  + +  K    + 
Sbjct: 47  AYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNP 106

Query: 203 SIARELR 209
            +   L+
Sbjct: 107 QLKEGLQ 113

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 85.0 bits (211), Expect = 6e-21
 Identities = 34/136 (25%), Positives = 52/136 (38%), Gaps = 17/136 (12%)

Query: 74  MTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVK 133
           +  EE    A+R K +GN   K E  E A+  Y  AI     + ++              
Sbjct: 3   LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVY-------------- 48

Query: 134 NPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLK 193
                N AA   KL  Y  A+  C   +  D    KA  R G A + L +   A   + K
Sbjct: 49  ---FCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKK 105

Query: 194 AGKFAPEDKSIARELR 209
           A +  P++++    L+
Sbjct: 106 ALELDPDNETYKSNLK 121

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 82.7 bits (205), Expect = 4e-20
 Identities = 27/127 (21%), Positives = 43/127 (33%), Gaps = 17/127 (13%)

Query: 83  ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAA 142
           A   K  GN  F++    +AM+ Y  AI     D                    + N AA
Sbjct: 16  ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKL-----------------YSNRAA 58

Query: 143 CLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK 202
           C  KL  ++ A+  C   +  +   +K   R+  A   +     A + + KA       K
Sbjct: 59  CYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCK 118

Query: 203 SIARELR 209
             A   +
Sbjct: 119 EAADGYQ 125

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 83.2 bits (206), Expect = 6e-20
 Identities = 27/155 (17%), Positives = 52/155 (33%), Gaps = 18/155 (11%)

Query: 83  ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAA 142
           +D+ K +GNA    ++  +A+  Y  A++    + ++                   N AA
Sbjct: 11  SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIY-----------------LSNRAA 53

Query: 143 CLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK 202
                 ++E+A     L    D    KA  R G AR ++     A+E + K  +      
Sbjct: 54  AYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGG 113

Query: 203 SIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPK 237
           S     R L   ++ + +  +              
Sbjct: 114 S-DAMKRGLETTKRKIEEANRGAEPPADDVDDAAG 147

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 85.0 bits (210), Expect = 1e-19
 Identities = 36/145 (24%), Positives = 56/145 (38%), Gaps = 19/145 (13%)

Query: 82  AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMA 141
           +A   K  GN LF   K  EA   Y  AI       ++                 + N A
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVY-----------------YTNRA 45

Query: 142 ACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED 201
            C LK+++ E+A+  C   L  D  +VKA F  G+ + E+   D A  +  +A   A E 
Sbjct: 46  LCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105

Query: 202 KSIAREL--RLLAEHEKAVYKKQKE 224
           +    +     L   +K  +   +E
Sbjct: 106 RLNFGDDIPSALRIAKKKRWNSIEE 130

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 85.1 bits (211), Expect = 4e-19
 Identities = 32/153 (20%), Positives = 57/153 (37%), Gaps = 17/153 (11%)

Query: 79  RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHL 138
           ++   ++       L ++ +  +A  +YE  +        +                   
Sbjct: 253 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEY-------------TVRSKE 299

Query: 139 NMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFA 198
            +  C  K ++  EAI  CS VL  + +NV AL  R +A       D A +D+  A +  
Sbjct: 300 RICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN 359

Query: 199 PEDKSIAREL----RLLAEHEKAVYKKQKEIYK 227
             D+ I   L    RLL + +K  Y K   + +
Sbjct: 360 ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKR 392

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 76.6 bits (189), Expect = 4e-16
 Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 14/138 (10%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMAL-----AVK-NP----CHLN 139
           G  L  E    ++M   E  +  +G   +    G+  D AL     AV  +P     +  
Sbjct: 10  GVDLGTENLYFQSMADVEKHLE-LGKKLLAA--GQLAD-ALSQFHAAVDGDPDNYIAYYR 65

Query: 140 MAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAP 199
            A   L + + + A+   + V+    +   A  +RG    + G+ D A +DF K  K  P
Sbjct: 66  RATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 125

Query: 200 EDKSIARELRLLAEHEKA 217
            +         L + ++ 
Sbjct: 126 SENEEKEAQSQLIKSDEM 143

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 67.0 bits (164), Expect = 6e-13
 Identities = 17/139 (12%), Positives = 38/139 (27%), Gaps = 17/139 (12%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
               F       A+   +  +     D                        A C +K   
Sbjct: 150 ALNAFGSGDYTAAIAFLDKILEVCVWDAEL-----------------RELRAECFIKEGE 192

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELR 209
             +AI           +N +A ++      +LG  + +  +  +  K   + K      +
Sbjct: 193 PRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYK 252

Query: 210 LLAEHEKAVYKKQKEIYKG 228
            + +  K +   ++ I  G
Sbjct: 253 QVKKLNKLIESAEELIRDG 271

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 63.6 bits (155), Expect = 9e-12
 Identities = 22/133 (16%), Positives = 46/133 (34%), Gaps = 6/133 (4%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
           G+ L K+ KL+EA   ++  +     +   +        +  ++     + A        
Sbjct: 101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR--LRSQALNAFGSGD 158

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKS----IA 205
           Y  AI     +L     + +    R +   + G+   A  D   A K   ++      I+
Sbjct: 159 YTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKIS 218

Query: 206 RELRLLAEHEKAV 218
                L +HE ++
Sbjct: 219 TLYYQLGDHELSL 231

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 57.4 bits (139), Expect = 9e-10
 Identities = 18/146 (12%), Positives = 49/146 (33%), Gaps = 15/146 (10%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
               ++    E ++ +    +    D         +       K    +  A  L++  R
Sbjct: 218 STLYYQLGDHELSLSEVRECLKLDQDHKRC-----FAHYKQVKKLNKLIESAEELIRDGR 272

Query: 150 YEEAIGQCSLVLGEDENN----VKALFRRGKARAELGQTDAAREDFLKAGKFAPED---- 201
           Y +A  +   V+  + +     V++  R     ++  +   A     +  +  P++    
Sbjct: 273 YTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNAL 332

Query: 202 KSIARELRLLAEHEKAV--YKKQKEI 225
           K  A    +   +++A+  Y+  +E 
Sbjct: 333 KDRAEAYLIEEMYDEAIQDYETAQEH 358

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 79.6 bits (197), Expect = 2e-17
 Identities = 28/143 (19%), Positives = 51/143 (35%), Gaps = 14/143 (9%)

Query: 79  RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHL 138
           ++   ++       L ++ +  +A  +YE  +        +                   
Sbjct: 230 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEY-------------TVRSKE 276

Query: 139 NMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFA 198
            +  C  K ++  EAI  CS VL  + +NV AL  R +A       D A +D+  A +  
Sbjct: 277 RICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336

Query: 199 PEDKSIARELRLLAEHEKAVYKK 221
             D+ I   L   A+      +K
Sbjct: 337 ENDQQIREGLE-KAQRLLKQSQK 358

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 73.5 bits (181), Expect = 3e-15
 Identities = 23/141 (16%), Positives = 52/141 (36%), Gaps = 17/141 (12%)

Query: 83  ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAA 142
            ++    G  L    +L +A+ Q+  A+    D+++                  +   A 
Sbjct: 3   VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYI-----------------AYYRRAT 45

Query: 143 CLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK 202
             L + + + A+   + V+    +   A  +RG    + G+ D A +DF K  K  P ++
Sbjct: 46  VFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQ 105

Query: 203 SIARELRLLAEHEKAVYKKQK 223
                   L + ++    + +
Sbjct: 106 EEKEAESQLVKADEMQRLRSQ 126

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 64.6 bits (158), Expect = 3e-12
 Identities = 15/131 (11%), Positives = 34/131 (25%), Gaps = 17/131 (12%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
               F       A+   +  +     D                        A C +K   
Sbjct: 127 ALDAFDGADYTAAITFLDKILEVCVWDAEL-----------------RELRAECFIKEGE 169

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELR 209
             +AI           +N +A ++      +LG  + +  +  +  K   + K      +
Sbjct: 170 PRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYK 229

Query: 210 LLAEHEKAVYK 220
            + +  K +  
Sbjct: 230 QVKKLNKLIES 240

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 61.9 bits (151), Expect = 3e-11
 Identities = 23/138 (16%), Positives = 48/138 (34%), Gaps = 8/138 (5%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
           G+ L K+ KL+EA   ++  +     +   +       +  A +     + A        
Sbjct: 78  GHLLLKQGKLDEAEDDFKKVLKSNPSEQ--EEKEAESQLVKADEMQRLRSQALDAFDGAD 135

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK----SIA 205
           Y  AI     +L     + +    R +   + G+   A  D   A K   ++      I+
Sbjct: 136 YTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKIS 195

Query: 206 RELRLLAEHEKAV--YKK 221
                L +HE ++   ++
Sbjct: 196 TLYYQLGDHELSLSEVRE 213

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 45.3 bits (108), Expect = 7e-06
 Identities = 12/108 (11%), Positives = 37/108 (34%), Gaps = 18/108 (16%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
                KE +  +A+   + A     D+                       ++    +L  
Sbjct: 161 AECFIKEGEPRKAISDLKAASKLKSDNT-----------------EAFYKISTLYYQLGD 203

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKF 197
           +E ++ +    L  D+++ +      + +      ++A E+ ++ G++
Sbjct: 204 HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESA-EELIRDGRY 250

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 72.7 bits (179), Expect = 2e-16
 Identities = 27/140 (19%), Positives = 49/140 (35%), Gaps = 25/140 (17%)

Query: 77  EERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPC 136
                AA   K  GNA +K++  E+A   Y+ AI     +  F                 
Sbjct: 2   NAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITF----------------- 44

Query: 137 HLNMAACLLKLKRYEEAIGQCSLVLGEDENN-------VKALFRRGKARAELGQTDAARE 189
           + N AA   + K++ E +  C   +              KA+ R G A  +      A +
Sbjct: 45  YNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQ 104

Query: 190 DFLKAGKFAPEDKSIARELR 209
            F ++      D  + ++++
Sbjct: 105 WFHRSLSEFR-DPELVKKVK 123

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 72.0 bits (177), Expect = 4e-16
 Identities = 22/148 (14%), Positives = 49/148 (33%), Gaps = 28/148 (18%)

Query: 83  ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAA 142
           A + K  GN  +K++  + A++ Y+ A      +  +                   N AA
Sbjct: 4   ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTY-----------------ITNQAA 46

Query: 143 CLLKLKRYEEAIGQCSLVLGEDENN-------VKALFRRGKARAELGQTDAAREDFLKAG 195
              +   Y +    C   +     N        KA  R G +  +  +   A   + K+ 
Sbjct: 47  VYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL 106

Query: 196 KFAPEDKSIARELRLLAEHEKAVYKKQK 223
                   + ++ +     EK + ++++
Sbjct: 107 AEHR-TPDVLKKCQQA---EKILKEQER 130

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 76.3 bits (188), Expect = 5e-16
 Identities = 33/143 (23%), Positives = 55/143 (38%), Gaps = 20/143 (13%)

Query: 82  AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMA 141
            A+  K   N  FK +  E A++ Y  AI     + ++                 + N +
Sbjct: 5   RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIY-----------------YGNRS 47

Query: 142 ACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED 201
              L+ + Y  A+G  +  +  D+  +K  +RR  +   LG+  AA  D+    K  P D
Sbjct: 48  LAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 107

Query: 202 KSIARELRLLAEHEKAVYKKQKE 224
           K    +     E  K V +K  E
Sbjct: 108 KDAKMK---YQECNKIVKQKAFE 127

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 73.0 bits (180), Expect = 2e-15
 Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 25/138 (18%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
           G   F +     A++ Y   I    +D            A       + N AA L KL  
Sbjct: 146 GKEYFTKSDWPNAVKAYTEMIKRAPED------------ARG-----YSNRAAALAKLMS 188

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELR 209
           + EAI  C+  + +D N V+A  R+  A+  + +  +A E    A     E  +      
Sbjct: 189 FPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNN------ 242

Query: 210 LLAEHEKAVYKKQKEIYK 227
                 + + +   +  +
Sbjct: 243 --GSSAREIDQLYYKASQ 258

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 69.1 bits (170), Expect = 4e-14
 Identities = 28/140 (20%), Positives = 48/140 (34%), Gaps = 21/140 (15%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
           GN  +K  + +EA++ Y  A               ++D+          N AA   +   
Sbjct: 12  GNKFYKARQFDEAIEHYNKAWEL------------HKDITY------LNNRAAAEYEKGE 53

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSI---AR 206
           YE AI   +  + +            K+ A +G       D  K  ++  +  +    A 
Sbjct: 54  YETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTAD 113

Query: 207 ELRLLAEHEKAVYKKQKEIY 226
            L  L   EK + K + E Y
Sbjct: 114 ILTKLRNAEKELKKAEAEAY 133

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 56.8 bits (138), Expect = 9e-10
 Identities = 21/128 (16%), Positives = 38/128 (29%), Gaps = 16/128 (12%)

Query: 90  GNALFKEEKLEEAMQQYEMAI--------AYMGDDFMFQLFGKYR------DMALAV--K 133
             A +++ + E A+     A+         Y      F   G            +    K
Sbjct: 45  AAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQK 104

Query: 134 NPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLK 193
           +      A  L KL+  E+ + +       +    +     GK          A + + +
Sbjct: 105 SLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTE 164

Query: 194 AGKFAPED 201
             K APED
Sbjct: 165 MIKRAPED 172

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 51.4 bits (124), Expect = 6e-08
 Identities = 19/157 (12%), Positives = 37/157 (23%), Gaps = 28/157 (17%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLFGKY------RDMALAVKNP- 135
             +  +       +   +  I Y                           +    V NP 
Sbjct: 79  SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYV-NPE 137

Query: 136 ---CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFL 192
                            +  A+   + ++     + +    R  A A+L     A  D  
Sbjct: 138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN 197

Query: 193 KAGKFAPED------KSIARELRLLAEHEKAV--YKK 221
           KA +  P        K+ A     + E+  A+     
Sbjct: 198 KAIEKDPNFVRAYIRKATA--QIAVKEYASALETLDA 232

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 19/96 (19%), Positives = 33/96 (34%), Gaps = 7/96 (7%)

Query: 137 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGK 196
                    K ++++EAI   +    E   ++  L  R  A  E G+ + A      A +
Sbjct: 8   EKAEGNKFYKARQFDEAIEHYNKAW-ELHKDITYLNNRAAAEYEKGEYETAISTLNDAVE 66

Query: 197 FAPED----KSIARELRLLAEHEKAV--YKKQKEIY 226
              E     K I++    +      +   KK  E Y
Sbjct: 67  QGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYY 102

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 67.7 bits (166), Expect = 8e-15
 Identities = 24/125 (19%), Positives = 36/125 (28%), Gaps = 18/125 (14%)

Query: 83  ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAA 142
            +++K  GN+LFK+    EA+  Y+  I     + +                  + N A 
Sbjct: 4   FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVG-----------------YSNKAM 46

Query: 143 CLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK 202
            L+KL  Y +AI  C   L           R       L     A            E  
Sbjct: 47  ALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR-LELAQGAVGSVQIPVVEVDELP 105

Query: 203 SIARE 207
                
Sbjct: 106 EGYDR 110

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 66.3 bits (162), Expect = 7e-14
 Identities = 25/135 (18%), Positives = 42/135 (31%), Gaps = 18/135 (13%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
           G   ++  K ++A + ++        D  +                  L + AC   L  
Sbjct: 25  GFNQYQAGKWDDAQKIFQALCMLDHYDARY-----------------FLGLGACRQSLGL 67

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELR 209
           YE+A+   S     D N  +  F   +   +LG  D A   F  A   A    +    L 
Sbjct: 68  YEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPA-HEALA 126

Query: 210 LLAEHEKAVYKKQKE 224
             A         +K+
Sbjct: 127 ARAGAMLEAVTARKD 141

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 43.6 bits (103), Expect = 7e-06
 Identities = 10/84 (11%), Positives = 25/84 (29%), Gaps = 4/84 (4%)

Query: 139 NMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFA 198
            +     +  ++++A      +   D  + +     G  R  LG  + A + +       
Sbjct: 23  ALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD 82

Query: 199 PEDKS----IARELRLLAEHEKAV 218
             +       A     L + + A 
Sbjct: 83  INEPRFPFHAAECHLQLGDLDGAE 106

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 68.2 bits (167), Expect = 2e-13
 Identities = 34/164 (20%), Positives = 55/164 (33%), Gaps = 20/164 (12%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
           GN  F  +   EA++ Y+ AI    ++ +F                 + N++AC +    
Sbjct: 32  GNHFFTAKNFNEAIKYYQYAIELDPNEPVF-----------------YSNISACYISTGD 74

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKA---GKFAPEDKSIAR 206
            E+ I   +  L    ++ KAL RR  A   LG    A  D       G F         
Sbjct: 75  LEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPML 134

Query: 207 ELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKKNWLIIFWQLL 250
           E  L  +  K + +   +         P      ++  IF   L
Sbjct: 135 ERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 62.8 bits (153), Expect = 2e-11
 Identities = 20/131 (15%), Positives = 44/131 (33%), Gaps = 3/131 (2%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
              L      + A++QY++A   + +       G    +  A       +     L  ++
Sbjct: 385 AEILTDRGDFDTAIKQYDIAKR-LEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEK 443

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSI--ARE 207
           +  AI   +     D  + +A     + + ++ + D A E F  +   A        A  
Sbjct: 444 FNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATT 503

Query: 208 LRLLAEHEKAV 218
               A+ +K +
Sbjct: 504 FAEAAKIQKRL 514

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 60.9 bits (148), Expect = 8e-11
 Identities = 23/142 (16%), Positives = 44/142 (30%), Gaps = 24/142 (16%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
           G   F +  L +A    + +I                   L      ++ +A  L   + 
Sbjct: 250 GIFHFLKNNLLDAQVLLQESIN------------------LHPTPNSYIFLALTLADKEN 291

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED----KSIA 205
            +E        +  +       + RG+    L     A+EDF KA    PE+      +A
Sbjct: 292 SQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLA 351

Query: 206 RELRLLAEHEKAV--YKKQKEI 225
             L    +  ++   + + K  
Sbjct: 352 CLLYKQGKFTESEAFFNETKLK 373

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 59.0 bits (143), Expect = 3e-10
 Identities = 13/115 (11%), Positives = 35/115 (30%), Gaps = 17/115 (14%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
           G   F  +  + A + ++ A +               +         ++ +A  L K  +
Sbjct: 317 GQMYFILQDYKNAKEDFQKAQSL------------NPENVYP-----YIQLACLLYKQGK 359

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSI 204
           + E+    +    +     +      +   + G  D A + +  A +     + I
Sbjct: 360 FTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 56.7 bits (137), Expect = 2e-09
 Identities = 16/138 (11%), Positives = 36/138 (26%), Gaps = 23/138 (16%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
              L  +E  +E  + ++ A+                +         + +       L+ 
Sbjct: 283 ALTLADKENSQEFFKFFQKAVD------------LNPEYPPT-----YYHRGQMYFILQD 325

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED----KSIA 205
           Y+ A          +  NV    +      + G+   +   F +     P         A
Sbjct: 326 YKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFA 385

Query: 206 RELRLLAEHEKAV--YKK 221
             L    + + A+  Y  
Sbjct: 386 EILTDRGDFDTAIKQYDI 403

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 48.6 bits (116), Expect = 8e-07
 Identities = 16/144 (11%), Positives = 36/144 (25%), Gaps = 12/144 (8%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKN-------PCHLNMAA 142
              L     L      ++  +     +        Y  ++ A++           +    
Sbjct: 158 SQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDL 217

Query: 143 CLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK 202
                  Y   +   ++     EN   AL   G           A+    ++    P   
Sbjct: 218 LTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPN 277

Query: 203 S---IARELRLLAEHEKAV--YKK 221
           S   +A  L      ++    ++K
Sbjct: 278 SYIFLALTLADKENSQEFFKFFQK 301

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 46.6 bits (111), Expect = 4e-06
 Identities = 12/65 (18%), Positives = 17/65 (26%)

Query: 137 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGK 196
             N        K + EAI      +  D N               G  +   E   KA +
Sbjct: 28  LKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALE 87

Query: 197 FAPED 201
             P+ 
Sbjct: 88  IKPDH 92

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 66.7 bits (163), Expect = 8e-13
 Identities = 28/155 (18%), Positives = 51/155 (32%), Gaps = 26/155 (16%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNP---CHLNMAACLLK 146
           GN  F+ +K ++A++ Y  A+                             + N++AC + 
Sbjct: 13  GNQFFRNKKYDDAIKYYNWALEL---------------------KEDPVFYSNLSACYVS 51

Query: 147 LKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAG-KFAPEDKSIA 205
           +   ++ +   +  L    +  K L RR  A   LG+   A  D           D SI 
Sbjct: 52  VGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIE 111

Query: 206 REL-RLLAEHEKAVYKKQKEIYKGIFGPRPEPKQK 239
             L R L +   +  K++            E   +
Sbjct: 112 PMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQ 146

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 64.4 bits (157), Expect = 5e-12
 Identities = 26/142 (18%), Positives = 43/142 (30%), Gaps = 24/142 (16%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
           G   F +     A +  + AI                   L  +   ++ MA  +     
Sbjct: 244 GIFKFLKNDPLGAHEDIKKAIE------------------LFPRVNSYIYMALIMADRND 285

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED----KSIA 205
             E        L  D NN    + RG+    L   D A +DF KA +  PE+      +A
Sbjct: 286 STEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLA 345

Query: 206 RELRLLAEHEKAV--YKKQKEI 225
                  + +     + + K  
Sbjct: 346 CLAYRENKFDDCETLFSEAKRK 367

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 59.8 bits (145), Expect = 2e-10
 Identities = 9/112 (8%), Positives = 33/112 (29%), Gaps = 17/112 (15%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
           G   F  +  ++A + ++ A     ++                    ++ +A    +  +
Sbjct: 311 GQMNFILQNYDQAGKDFDKAKELDPENIF-----------------PYIQLACLAYRENK 353

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED 201
           +++     S    +     +      +   +    D A + +  A +   + 
Sbjct: 354 FDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKL 405

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 59.4 bits (144), Expect = 3e-10
 Identities = 18/142 (12%), Positives = 38/142 (26%), Gaps = 23/142 (16%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
              +       E    ++ A+                + +       + +       L+ 
Sbjct: 277 ALIMADRNDSTEYYNYFDKALK------------LDSNNSSV-----YYHRGQMNFILQN 319

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED----KSIA 205
           Y++A          D  N+    +         + D     F +A +  PE        A
Sbjct: 320 YDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFA 379

Query: 206 RELRLLAEHEKAV--YKKQKEI 225
             L    + +KA+  Y    E+
Sbjct: 380 EILTDKNDFDKALKQYDLAIEL 401

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 59.0 bits (143), Expect = 4e-10
 Identities = 19/142 (13%), Positives = 45/142 (31%), Gaps = 12/142 (8%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
              L  +   ++A++QY++AI              Y  +A  V       +      ++ 
Sbjct: 379 AEILTDKNDFDKALKQYDLAIELENKLDGI-----YVGIAPLVGK---ATLLTRNPTVEN 430

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSI--ARE 207
           + EA          D  + +A     + + +    D A   F ++   A   +    A  
Sbjct: 431 FIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT 490

Query: 208 LRLLAEHEKAV--YKKQKEIYK 227
               A+ ++ +       +  +
Sbjct: 491 FAEAAKVQQRIRSDPVLAKKIQ 512

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 18/141 (12%), Positives = 37/141 (26%), Gaps = 8/141 (5%)

Query: 81  GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNM 140
                      + F   K E     Y+ +     +     L     ++            
Sbjct: 155 QENLPSVTSMASFFGIFKPELTFANYDESNEADKE-----LMNGLSNLYKRSPESYDKAD 209

Query: 141 AACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE 200
            +     + +EE + + +      E    +L   G  +        A ED  KA +  P 
Sbjct: 210 ESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR 269

Query: 201 DKS---IARELRLLAEHEKAV 218
             S   +A  +    +  +  
Sbjct: 270 VNSYIYMALIMADRNDSTEYY 290

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 1/58 (1%)

Query: 137 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKA 194
             +      + K+Y++AI   +  L   E+ V            +G      E   KA
Sbjct: 9   LKDKGNQFFRNKKYDDAIKYYNWALELKEDPV-FYSNLSACYVSVGDLKKVVEMSTKA 65

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 63.3 bits (154), Expect = 9e-13
 Identities = 16/124 (12%), Positives = 43/124 (34%), Gaps = 17/124 (13%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
               + + ++EEA   +     Y   +  +                  + +AA     ++
Sbjct: 43  AYDFYNKGRIEEAEVFFRFLCIYDFYNVDY-----------------IMGLAAIYQIKEQ 85

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELR 209
           +++A    ++     +N+   +F  G+ +  L     A+E F    + + ++K   +   
Sbjct: 86  FQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQS 145

Query: 210 LLAE 213
            L  
Sbjct: 146 YLDA 149

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 15/84 (17%), Positives = 22/84 (26%), Gaps = 4/84 (4%)

Query: 139 NMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFA 198
           + A       R EEA      +   D  NV  +           Q   A + +  A    
Sbjct: 41  SYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100

Query: 199 PEDKS----IARELRLLAEHEKAV 218
             D +      +    L    KA 
Sbjct: 101 KNDYTPVFHTGQCQLRLKAPLKAK 124

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 64.4 bits (157), Expect = 5e-12
 Identities = 17/135 (12%), Positives = 29/135 (21%), Gaps = 19/135 (14%)

Query: 90  GNALFKEEKLEEAMQQYEMAI--------AYMGDDFMFQLFGKYR------DMALAVKNP 135
                  E ++  +     A         A   +    Q     +        A  +  P
Sbjct: 351 DGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGL-TP 409

Query: 136 ----CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDF 191
                  +       L+  +  +       G     V A+   G  R  L    A     
Sbjct: 410 EQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRP 469

Query: 192 LKAGKFAPEDKSIAR 206
             A      D  +A 
Sbjct: 470 DPALAALTNDHLVAL 484

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 59.0 bits (143), Expect = 3e-10
 Identities = 17/160 (10%), Positives = 31/160 (19%), Gaps = 25/160 (15%)

Query: 90  GNALFKEEKLEEAMQQYEMAI--------AYMGDDFMFQLFGKYR------DMALAVKNP 135
           G      E ++  +     A         A    D   Q     +        A  +  P
Sbjct: 317 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGL-TP 375

Query: 136 ----CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDF 191
                  +       L+  +  +       G     V A+      +  L          
Sbjct: 376 EQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVL 435

Query: 192 LKAGKFAPED----KSIARELRLLAEHEKAV--YKKQKEI 225
            +A    P+      S       L      +         
Sbjct: 436 CQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAA 475

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 56.3 bits (136), Expect = 2e-09
 Identities = 12/133 (9%), Positives = 29/133 (21%), Gaps = 21/133 (15%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
                  E ++  +     A     +  +                    +       L+ 
Sbjct: 113 DGGKQALETVQRLLPVLCQAHGLTPEQVVA-----------------IASHDGGKQALET 155

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED----KSIA 205
            +  +       G     V A+   G  +  L           +A    P+      S  
Sbjct: 156 VQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNG 215

Query: 206 RELRLLAEHEKAV 218
              + L   ++ +
Sbjct: 216 GGKQALETVQRLL 228

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 56.3 bits (136), Expect = 3e-09
 Identities = 14/133 (10%), Positives = 31/133 (23%), Gaps = 21/133 (15%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
           G      E ++  +     A                    +A       + +     L+ 
Sbjct: 249 GGGKQALETVQRLLPVLCQAHGLTPQQ------------VVA-----IASNSGGKQALET 291

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED----KSIA 205
            +  +       G     V A+   G  +  L           +A    P+      S  
Sbjct: 292 VQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHD 351

Query: 206 RELRLLAEHEKAV 218
              + L   ++ +
Sbjct: 352 GGKQALETVQRLL 364

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 55.9 bits (135), Expect = 3e-09
 Identities = 13/133 (9%), Positives = 29/133 (21%), Gaps = 21/133 (15%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
           G      E ++  +     A                    +A       +       L+ 
Sbjct: 215 GGGKQALETVQRLLPVLCQAHGLTPQQ------------VVA-----IASNGGGKQALET 257

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED----KSIA 205
            +  +       G     V A+      +  L           +A    P+      S  
Sbjct: 258 VQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNG 317

Query: 206 RELRLLAEHEKAV 218
              + L   ++ +
Sbjct: 318 GGKQALETVQRLL 330

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 55.9 bits (135), Expect = 3e-09
 Identities = 16/151 (10%), Positives = 35/151 (23%), Gaps = 23/151 (15%)

Query: 90  GNALFKEEKLEEAMQQYEMAI--------AYMGDDFMFQLFGKYR------DMALAVKNP 135
                  E ++  +     A         A   +    Q     +        A  +  P
Sbjct: 147 DGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGL-TP 205

Query: 136 ----CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDF 191
                  +       L+  +  +       G     V A+   G  +  L          
Sbjct: 206 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVL 265

Query: 192 LKAGKFAPED----KSIARELRLLAEHEKAV 218
            +A    P+      S +   + L   ++ +
Sbjct: 266 CQAHGLTPQQVVAIASNSGGKQALETVQRLL 296

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 54.8 bits (132), Expect = 8e-09
 Identities = 15/130 (11%), Positives = 28/130 (21%), Gaps = 19/130 (14%)

Query: 90  GNALFKEEKLEEAMQQYEMAI--------AYMGDDFMFQLFGKYR------DMALAVKNP 135
                  E ++  +     A         A   +    Q     +        A  +  P
Sbjct: 283 SGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGL-TP 341

Query: 136 ----CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDF 191
                  +       L+  +  +       G     V A+   G  +  L          
Sbjct: 342 QQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVL 401

Query: 192 LKAGKFAPED 201
            +A    PE 
Sbjct: 402 CQAHGLTPEQ 411

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 52.1 bits (125), Expect = 6e-08
 Identities = 13/137 (9%), Positives = 29/137 (21%), Gaps = 18/137 (13%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
                  E ++  +     A                    +A       +       L+ 
Sbjct: 79  DGGKQALETVQRLLPVLCQAHGLTPQQ------------VVA-----IASHDGGKQALET 121

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELR 209
            +  +       G     V A+      +  L    A      +A    PE   +A    
Sbjct: 122 VQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQ-VVAIASN 180

Query: 210 LLAEHEKAVYKKQKEIY 226
              +      ++   + 
Sbjct: 181 GGGKQALETVQRLLPVL 197

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 21/158 (13%), Positives = 37/158 (23%), Gaps = 23/158 (14%)

Query: 90  GNALFKEEKLEEAMQ----------QYEMAIAYMGDDFMFQLFGKYRDMALAVK----NP 135
             A   E  L  A +             + IA  G     +    +R+ AL        P
Sbjct: 11  SGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRN-ALTGAPLNLTP 69

Query: 136 ----CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDF 191
                  +       L+  +  +       G     V A+      +  L          
Sbjct: 70  EQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVL 129

Query: 192 LKAGKFAPED----KSIARELRLLAEHEKAVYKKQKEI 225
            +A    PE      S     + L   +  +    +  
Sbjct: 130 CQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAH 167

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 63.5 bits (155), Expect = 6e-12
 Identities = 21/112 (18%), Positives = 37/112 (33%), Gaps = 8/112 (7%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
           G   F+  + + A + +  A+  +          K+         P   N+     KLK+
Sbjct: 200 GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKW--------EPLLNNLGHVCRKLKK 251

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED 201
           Y EA+      L     N       G   + +G  + A + F  A     +D
Sbjct: 252 YAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDD 303

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 56.9 bits (138), Expect = 1e-09
 Identities = 21/151 (13%), Positives = 44/151 (29%), Gaps = 32/151 (21%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
           G++   E + ++AM  Y  A   M            +   L       L +         
Sbjct: 132 GHSFAVESEHDQAMAAYFTAAQLM------------KGCHLP-----MLYIGLEYGLTNN 174

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARE-- 207
            + A    S  L     +   +   G    + G+   A + FL A +      +      
Sbjct: 175 SKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDK 234

Query: 208 -----------LRLLAEHEKAV--YKKQKEI 225
                       R L ++ +A+  +++   +
Sbjct: 235 WEPLLNNLGHVCRKLKKYAEALDYHRQALVL 265

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 45.7 bits (109), Expect = 7e-06
 Identities = 16/139 (11%), Positives = 38/139 (27%), Gaps = 24/139 (17%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
               +     +   +   + +         +    +          C       L++L +
Sbjct: 29  AERHYYNCDFKMCYKLTSVVM---------EKDPFHAS--------CLPVHIGTLVELNK 71

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQ-TDAAREDFLKAGKFAPED----KSI 204
             E       ++    +N  + F  G     +G   + AR    KA            + 
Sbjct: 72  ANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAY 131

Query: 205 ARELRLLAEHEKAV--YKK 221
                + +EH++A+  Y  
Sbjct: 132 GHSFAVESEHDQAMAAYFT 150

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 9/64 (14%), Positives = 21/64 (32%)

Query: 138 LNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKF 197
           +++A        ++      S+V+ +D  +   L        EL + +       K    
Sbjct: 26  VSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDL 85

Query: 198 APED 201
            P +
Sbjct: 86  YPSN 89

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 13/82 (15%), Positives = 27/82 (32%), Gaps = 17/82 (20%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDD--------FMFQLFGKYR------DMALAVK-- 133
           G+   K +K  EA+  +  A+  +  +        ++  L G +         AL ++  
Sbjct: 243 GHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD 302

Query: 134 -NPCHLNMAACLLKLKRYEEAI 154
                  +  C+       EA 
Sbjct: 303 DTFSVTMLGHCIEMYIGDSEAY 324

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 59.8 bits (146), Expect = 7e-12
 Identities = 21/115 (18%), Positives = 35/115 (30%), Gaps = 21/115 (18%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
           G   +      E++  +E AI    ++            +        L     L  L+R
Sbjct: 13  GVLQYDAGNYTESIDLFEKAIQLDPEE------------SKY-----WLMKGKALYNLER 55

Query: 150 YEEAIGQC---SLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED 201
           YEEA+  C    + + EDE N      +  A   +   +   E      K     
Sbjct: 56  YEEAV-DCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 42.8 bits (102), Expect = 9e-06
 Identities = 15/99 (15%), Positives = 31/99 (31%), Gaps = 12/99 (12%)

Query: 137 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGK 196
           +            Y E+I      +  D    K    +GKA   L + + A + +     
Sbjct: 9   YYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVIN 68

Query: 197 FAPED--------KSIARELRLLAEHEKAV--YKKQKEI 225
              ++        K+ A  LR +   E      + + ++
Sbjct: 69  VIEDEYNKDVWAAKADA--LRYIEGKEVEAEIAEARAKL 105

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 62.3 bits (152), Expect = 9e-12
 Identities = 19/144 (13%), Positives = 45/144 (31%), Gaps = 23/144 (15%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
           G  L+++++ EEA Q+   A               Y + +         N+    L++K+
Sbjct: 112 GGFLYEQKRYEEAYQRLLEASQDTL----------YPERSRV-----FENLGLVSLQMKK 156

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK------- 202
             +A       L  + N             +  +   AR+ +    +   ++        
Sbjct: 157 PAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGI 216

Query: 203 SIARELRLLAEHEKAVYKKQKEIY 226
            +A+          +   + K +Y
Sbjct: 217 RLAKVFEDRDT-AASYGLQLKRLY 239

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 50.3 bits (121), Expect = 1e-07
 Identities = 24/126 (19%), Positives = 41/126 (32%), Gaps = 23/126 (18%)

Query: 90  GNALFKEEKLEEAMQQYEMAI--------AY--MGDDFMFQLFGKYRD------MALAVK 133
           G    +    E+A      A+        A+  +    +FQ   + +        ALA  
Sbjct: 44  GLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALA--VVFQTEMEPKLADEEYRKALASD 101

Query: 134 --NP-CHLNMAACLLKLKRYEEAIGQCSLVLGE--DENNVKALFRRGKARAELGQTDAAR 188
             N     N    L + KRYEEA  +      +       +     G    ++ +   A+
Sbjct: 102 SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAK 161

Query: 189 EDFLKA 194
           E F K+
Sbjct: 162 EYFEKS 167

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 42.3 bits (100), Expect = 6e-05
 Identities = 10/65 (15%), Positives = 21/65 (32%)

Query: 137 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGK 196
           ++ +    L+    E+A       L  D ++  A            +   A E++ KA  
Sbjct: 40  YIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALA 99

Query: 197 FAPED 201
               +
Sbjct: 100 SDSRN 104

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 61.3 bits (149), Expect = 1e-11
 Identities = 23/138 (16%), Positives = 47/138 (34%), Gaps = 1/138 (0%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
            +A  +  +  +A+  +   IA +  D     +    D    + +     +A    K + 
Sbjct: 11  VSAAIEAGQNGQAVSYFRQTIA-LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRN 69

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELR 209
           Y++A      +L +  NNV  L    + +   GQ   A   + K  +   ++ +    L 
Sbjct: 70  YDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLG 129

Query: 210 LLAEHEKAVYKKQKEIYK 227
                     KK+ E   
Sbjct: 130 NYYYLTAEQEKKKLETDY 147

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 51.3 bits (123), Expect = 4e-08
 Identities = 20/157 (12%), Positives = 49/157 (31%), Gaps = 28/157 (17%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDF--------MFQLFGKYRDMALAV------KNP 135
             A  K    ++A   Y+  +    ++         M    G+ +D AL +         
Sbjct: 61  ALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKD-ALRMYEKILQLEA 119

Query: 136 ----CHLNMA-ACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAARED 190
                ++ +     L  ++ ++ +      L        A +R G ++    + + AR  
Sbjct: 120 DNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNS 179

Query: 191 FLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYK 227
             K     P  +          +    + + +KE+ +
Sbjct: 180 LQKVILRFPSTE--------AQKTLDKILRIEKEVNR 208

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 62.9 bits (153), Expect = 2e-11
 Identities = 20/163 (12%), Positives = 40/163 (24%), Gaps = 32/163 (19%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLF--------GKYRDMAL-----AVK-NP 135
            ++   E + ++A+  Y  A        +  LF        G    +A      +     
Sbjct: 414 AHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNI-LLANEYLQSSYALFQ 472

Query: 136 ----CHLNMAACLLKLKRYEEAIGQ-------CSLVLGEDENNVKALFRRGKARAELGQT 184
                   +          + AI                ++         G A  +L   
Sbjct: 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMY 532

Query: 185 DAAREDFLKAGKFAPED----KSIARELRLLAEHEKAV--YKK 221
           DAA +   +    +  D     +IA           A+    +
Sbjct: 533 DAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHE 575

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 59.1 bits (143), Expect = 3e-10
 Identities = 16/112 (14%), Positives = 34/112 (30%), Gaps = 10/112 (8%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
           G   F +  ++ A+  ++ A+  +      +     +  A         N+     KLK 
Sbjct: 482 GVVAFNKSDMQTAINHFQNALLLVKKTQSNE-----KPWAAT-----WANLGHAYRKLKM 531

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED 201
           Y+ AI   +  L    N+                   A     ++   +P +
Sbjct: 532 YDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNE 583

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 52.5 bits (126), Expect = 4e-08
 Identities = 16/138 (11%), Positives = 37/138 (26%), Gaps = 23/138 (16%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
            + LF   +  + +      +         ++     D         +    A L +   
Sbjct: 312 ADTLFVRSRFIDVLAITTKIL---------EIDPYNLD--------VYPLHLASLHESGE 354

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKS----IA 205
             +     + ++             G     + +   AR  F K+    P+        A
Sbjct: 355 KNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFA 414

Query: 206 RELRLLAEHEKAV--YKK 221
               +  EH++A+  Y  
Sbjct: 415 HSFAIEGEHDQAISAYTT 432

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 51.8 bits (124), Expect = 8e-08
 Identities = 16/142 (11%), Positives = 36/142 (25%), Gaps = 23/142 (16%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
             +L +  +  +        +             ++ + A+       L +    L + +
Sbjct: 346 LASLHESGEKNKLYLISNDLVD------------RHPEKAVT-----WLAVGIYYLCVNK 388

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED----KSIA 205
             EA    S     D     A      + A  G+ D A   +  A +           + 
Sbjct: 389 ISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLG 448

Query: 206 RELRLLAEHEKAV--YKKQKEI 225
            +   L     A    +    +
Sbjct: 449 MQHMQLGNILLANEYLQSSYAL 470

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 49.1 bits (117), Expect = 7e-07
 Identities = 16/138 (11%), Positives = 34/138 (24%), Gaps = 23/138 (16%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
                  E      + Y  +I  +                        L  A  L    R
Sbjct: 278 KLNKTSHEDELRRAEDYLSSINGLEKSS-----------------DLLLCKADTLFVRSR 320

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK----SIA 205
           + + +   + +L  D  N+        +  E G+ +             PE      ++ 
Sbjct: 321 FIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVG 380

Query: 206 RELRLLAEHEKAV--YKK 221
                + +  +A   + K
Sbjct: 381 IYYLCVNKISEARRYFSK 398

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 45.6 bits (108), Expect = 8e-06
 Identities = 16/138 (11%), Positives = 38/138 (27%), Gaps = 1/138 (0%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
              L K    + A+        +  D+         +D  + ++             L  
Sbjct: 157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKL-LMQDGGIKLEASMCYLRGQVYTNLSN 215

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELR 209
           ++ A       L  D    +A  +           +      L    ++ ED +  R L 
Sbjct: 216 FDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLY 275

Query: 210 LLAEHEKAVYKKQKEIYK 227
           +L  ++ +   + +    
Sbjct: 276 MLKLNKTSHEDELRRAED 293

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 60.7 bits (148), Expect = 3e-11
 Identities = 23/142 (16%), Positives = 43/142 (30%), Gaps = 22/142 (15%)

Query: 90  GNALFKE-EKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK 148
           G  L     +  E+M  ++ A+A             Y    +A     +LN   C  K  
Sbjct: 83  GWFLCGRLNRPAESMAYFDKALADPT----------YPTPYIA-----NLNKGICSAKQG 127

Query: 149 RYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIA--- 205
           ++  A       L        A     + +   GQ   A   F K        ++     
Sbjct: 128 QFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLL 187

Query: 206 --RELRLLAEHEKAVYKKQKEI 225
             +  + L   + A Y+ + ++
Sbjct: 188 GWKIAKALGNAQAA-YEYEAQL 208

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 17/138 (12%), Positives = 41/138 (29%), Gaps = 20/138 (14%)

Query: 77  EERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDD--------FMFQLFGKYRD- 127
           E+    ++ +        + +   +A    E A+     +         ++Q        
Sbjct: 2   EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKA 61

Query: 128 -------MALAVKNP-CHLNMAACLL-KLKRYEEAIGQCSLVLGED--ENNVKALFRRGK 176
                  +++   +   + N    L  +L R  E++      L +        A   +G 
Sbjct: 62  QESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGI 121

Query: 177 ARAELGQTDAAREDFLKA 194
             A+ GQ   A     ++
Sbjct: 122 CSAKQGQFGLAEAYLKRS 139

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 15/65 (23%), Positives = 24/65 (36%)

Query: 137 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGK 196
              +A   ++ + Y +A       L  D  N  A   R +    L   D A+E F +A  
Sbjct: 11  KTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALS 70

Query: 197 FAPED 201
             P+ 
Sbjct: 71  IKPDS 75

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 61.4 bits (150), Expect = 5e-11
 Identities = 26/138 (18%), Positives = 45/138 (32%), Gaps = 23/138 (16%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
           GN L +    + A+  Y  A++   +             A+      H N+A    +   
Sbjct: 210 GNVLKEARIFDRAVAAYLRALSLSPNH------------AVV-----HGNLACVYYEQGL 252

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED----KSIA 205
            + AI      +    +   A      A  E G    A + +  A +  P       ++A
Sbjct: 253 IDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA 312

Query: 206 RELRLLAEHEKAV--YKK 221
              R     E+AV  Y+K
Sbjct: 313 NIKREQGNIEEAVRLYRK 330

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 60.6 bits (148), Expect = 8e-11
 Identities = 27/138 (19%), Positives = 52/138 (37%), Gaps = 23/138 (16%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
           GN   +  +L+EA++ Y  A+         +L   + D         ++N+AA L+    
Sbjct: 74  GNVYKERGQLQEAIEHYRHAL---------RLKPDFID--------GYINLAAALVAAGD 116

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED----KSIA 205
            E A+      L  + +        G     LG+ + A+  +LKA +  P       ++ 
Sbjct: 117 MEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLG 176

Query: 206 RELRLLAEHEKAV--YKK 221
                  E   A+  ++K
Sbjct: 177 CVFNAQGEIWLAIHHFEK 194

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 60.2 bits (147), Expect = 9e-11
 Identities = 19/112 (16%), Positives = 33/112 (29%), Gaps = 17/112 (15%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
            NAL ++  + EA   Y  A+                  A +       N+A    +   
Sbjct: 278 ANALKEKGSVAEAEDCYNTALRLCPTH------------ADS-----LNNLANIKREQGN 320

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED 201
            EEA+      L        A         + G+   A   + +A + +P  
Sbjct: 321 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 372

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 60.2 bits (147), Expect = 1e-10
 Identities = 28/138 (20%), Positives = 42/138 (30%), Gaps = 23/138 (16%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
             AL     +E A+Q Y  A+ Y  D +                     ++   L  L R
Sbjct: 108 AAALVAAGDMEGAVQAYVSALQYNPDLY-----------------CVRSDLGNLLKALGR 150

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED----KSIA 205
            EEA       +    N   A    G      G+   A   F KA    P       ++ 
Sbjct: 151 LEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLG 210

Query: 206 RELRLLAEHEKAV--YKK 221
             L+     ++AV  Y +
Sbjct: 211 NVLKEARIFDRAVAAYLR 228

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 59.9 bits (146), Expect = 2e-10
 Identities = 32/158 (20%), Positives = 57/158 (36%), Gaps = 29/158 (18%)

Query: 90  GNALFKEEKLEEAMQQYEMAI--------AY--MGDDFMFQLFGKYR------DMALAVK 133
           GN L    +LEEA   Y  AI        A+  +G  F  Q  G+        + A+ + 
Sbjct: 142 GNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ--GEIWLAIHHFEKAVTL- 198

Query: 134 NP----CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAARE 189
           +P     ++N+   L + + ++ A+      L    N+            E G  D A +
Sbjct: 199 DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAID 258

Query: 190 DFLKAGKFAPED----KSIARELRLLAEHEKAV--YKK 221
            + +A +  P       ++A  L+      +A   Y  
Sbjct: 259 TYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNT 296

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 55.6 bits (135), Expect = 4e-09
 Identities = 21/138 (15%), Positives = 44/138 (31%), Gaps = 23/138 (16%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
            +  ++    E A +          D+                     L +++   + +R
Sbjct: 6   AHREYQAGDFEAAERHCMQLWRQEPDNT-----------------GVLLLLSSIHFQCRR 48

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK----SIA 205
            + +    +L + ++    +A    G    E GQ   A E +  A +  P+      ++A
Sbjct: 49  LDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLA 108

Query: 206 RELRLLAEHEKAV--YKK 221
             L    + E AV  Y  
Sbjct: 109 AALVAAGDMEGAVQAYVS 126

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 50.6 bits (122), Expect = 2e-07
 Identities = 12/90 (13%), Positives = 31/90 (34%), Gaps = 6/90 (6%)

Query: 138 LNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKF 197
           + +A    +   +E A   C  +  ++ +N   L        +  + D +      A K 
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62

Query: 198 APED----KSIARELRLLAEHEKAV--YKK 221
            P       ++    +   + ++A+  Y+ 
Sbjct: 63  NPLLAEAYSNLGNVYKERGQLQEAIEHYRH 92

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 60.0 bits (146), Expect = 9e-11
 Identities = 21/145 (14%), Positives = 40/145 (27%), Gaps = 26/145 (17%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
           G  L K+ +   A+QQY+ A+                          +  + +       
Sbjct: 81  GKILMKKGQDSLAIQQYQAAVDRDTTRLD-----------------MYGQIGSYFYNKGN 123

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK------- 202
           +  AI      +     + K  +  G+A     +   A   F+K  +  P          
Sbjct: 124 FPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRA 183

Query: 203 SIARELRLLAEHEKAV--YKKQKEI 225
                     +   A   Y+K  E+
Sbjct: 184 RANAAQDPDTKQGLAKPYYEKLIEV 208

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 57.3 bits (139), Expect = 6e-10
 Identities = 25/159 (15%), Positives = 43/159 (27%), Gaps = 28/159 (17%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLFGKYRDMALAV--------- 132
            + LFK     EA++ +    A   +           +    KY D+A            
Sbjct: 10  ADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKY-DLAQKDIETYFSKVN 68

Query: 133 KNP----CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAR 188
                          L+K  +   AI Q    +  D   +    + G      G    A 
Sbjct: 69  ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAI 128

Query: 189 EDFLKAGKFAPEDKS----IARELRLLAEHEKAV--YKK 221
           +   K  +    D      + +      E+ KA   + K
Sbjct: 129 QYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVK 167

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 18/94 (19%), Positives = 31/94 (32%), Gaps = 9/94 (9%)

Query: 137 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAARED---FLK 193
               A  L K   Y EAI   + +  +  N+     RR     EL + D A++D   +  
Sbjct: 6   EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS 65

Query: 194 AGKFAPED----KSIARELRLLAEHEKAV--YKK 221
                       +   + L    +   A+  Y+ 
Sbjct: 66  KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQA 99

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 42.6 bits (101), Expect = 6e-05
 Identities = 16/122 (13%), Positives = 30/122 (24%), Gaps = 28/122 (22%)

Query: 90  GNALFKEEKLEEAMQQYEMAI-----------------AYMGDDFMFQLFGKYRDMALAV 132
           G A +  ++  +A   +   +                 A    D    L   Y +  + V
Sbjct: 149 GQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208

Query: 133 KNP-----------CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAEL 181
             P            +  +A      +   +A      +L  D  N KA+          
Sbjct: 209 CAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH 268

Query: 182 GQ 183
             
Sbjct: 269 HH 270

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 42.3 bits (100), Expect = 6e-05
 Identities = 19/142 (13%), Positives = 36/142 (25%), Gaps = 30/142 (21%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDF--------MFQLFGKYRDMALAV------KNP 135
           G+  + +     A+Q  E  I     D          +    +Y   A +         P
Sbjct: 115 GSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEY-VKADSSFVKVLELKP 173

Query: 136 ----CHLNMAACLLKLKR----------YEEAIGQCSLVLGEDENN-VKALFRRGKARAE 180
                +L  A                  YE+ I  C+    + ++  ++A          
Sbjct: 174 NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI 233

Query: 181 LGQTDAAREDFLKAGKFAPEDK 202
                 A   +       P +K
Sbjct: 234 NRDKVKADAAWKNILALDPTNK 255

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 59.0 bits (143), Expect = 9e-11
 Identities = 24/170 (14%), Positives = 50/170 (29%), Gaps = 37/170 (21%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
           G      + + EA + +  +I             + + +A+A     +        + ++
Sbjct: 44  GCMYTILKNMTEAEKAFTRSIN------------RDKHLAVA-----YFQRGMLYYQTEK 86

Query: 150 YEEAIGQCSLVLGEDENNV----------------KALFRRGKARAELGQTDAAREDFLK 193
           Y+ AI      L +   N                 + L+      A+  +   A E    
Sbjct: 87  YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL 146

Query: 194 AGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKG-IFGPRPEPKQKKNW 242
           A     E +    + + +    K    +   I  G +F  RP  +Q    
Sbjct: 147 ATSMKSEPRHSKID-KAMECVWKQKLYEPVVIPVGRLF--RPNERQVAQL 193

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 53.2 bits (128), Expect = 1e-08
 Identities = 23/149 (15%), Positives = 46/149 (30%), Gaps = 29/149 (19%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
           G     ++  + A+  +                      +         N+      LK 
Sbjct: 13  GVLAADKKDWKGALDAFSAVQD---------------PHSRI-----CFNIGCMYTILKN 52

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELR 209
             EA    +  +  D++   A F+RG    +  + D A +D  +A      ++ I  ++ 
Sbjct: 53  MTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKIL 112

Query: 210 LLAEHEKA---------VYKKQKEIYKGI 229
            L     A         +Y K++E  K  
Sbjct: 113 GLQFKLFACEVLYNIAFMYAKKEEWKKAE 141

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 60.6 bits (146), Expect = 1e-10
 Identities = 21/138 (15%), Positives = 46/138 (33%), Gaps = 23/138 (16%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
            N   ++  +EEA++ Y  A+    +                     H N+A+ L +  +
Sbjct: 16  ANIKREQGNIEEAVRLYRKALEVFPEFAA-----------------AHSNLASVLQQQGK 58

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED----KSIA 205
            +EA+      +        A    G    E+     A + + +A +  P       ++A
Sbjct: 59  LQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLA 118

Query: 206 RELRLLAEHEKAV--YKK 221
              +      +A+  Y+ 
Sbjct: 119 SIHKDSGNIPEAIASYRT 136

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 58.3 bits (140), Expect = 7e-10
 Identities = 26/182 (14%), Positives = 46/182 (25%), Gaps = 25/182 (13%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDD--------FMFQLFGKYR------DMALAVKNP 135
            + L ++ KL+EA+  Y+ AI                 +     +        A+ + NP
Sbjct: 50  ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI-NP 108

Query: 136 ----CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDF 191
                H N+A+         EAI      L    +   A          +       E  
Sbjct: 109 AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERM 168

Query: 192 LKAGKFAPEDKSIARELRLLAEH------EKAVYKKQKEIYKGIFGPRPEPKQKKNWLII 245
            K      +     R   +   H           K   E +  +   +     K  +   
Sbjct: 169 KKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHP 228

Query: 246 FW 247
             
Sbjct: 229 KD 230

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 44.8 bits (105), Expect = 1e-05
 Identities = 11/65 (16%), Positives = 20/65 (30%)

Query: 137 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGK 196
             N+A    +    EEA+      L        A         + G+   A   + +A +
Sbjct: 12  LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 71

Query: 197 FAPED 201
            +P  
Sbjct: 72  ISPTF 76

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 58.7 bits (143), Expect = 1e-10
 Identities = 24/125 (19%), Positives = 42/125 (33%), Gaps = 23/125 (18%)

Query: 90  GNALFKEEKLEEAMQQYEMAI--------AY--MGDDFMFQLFGKYR------DMALAVK 133
           GN    +E  +EA   +E A+         +  +G   +     + +        A+ + 
Sbjct: 98  GNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKL--EQPKLALPYLQRAVEL- 154

Query: 134 NP----CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAARE 189
           N            CL      +EA+ Q + V  +D  +  A +  G   A     + A E
Sbjct: 155 NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALE 214

Query: 190 DFLKA 194
              KA
Sbjct: 215 MLDKA 219

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 56.4 bits (137), Expect = 1e-09
 Identities = 32/160 (20%), Positives = 55/160 (34%), Gaps = 33/160 (20%)

Query: 90  GNALFKEEKLEEAMQQYEMAI--------AY--MGDDFMFQLFGKYR------DMALAVK 133
            N L    +LE A+  Y+ A+        AY   G   ++ +   Y+      + AL   
Sbjct: 64  ANLLSSVNELERALAFYDKALELDSSAATAYYGAG--NVYVVKEMYKEAKDMFEKALRA- 120

Query: 134 NP----CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAARE 189
                     +   L+KL++ + A+      +  +EN+ +A F+ G   A  G  D A  
Sbjct: 121 GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALS 180

Query: 190 DFLKAGKFAPED------KSIARELRLLAEHEKAV--YKK 221
            F    +  P          +          EKA+    K
Sbjct: 181 QFAAVTEQDPGHADAFYNAGVT--YAYKENREKALEMLDK 218

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 52.1 bits (126), Expect = 3e-08
 Identities = 19/112 (16%), Positives = 35/112 (31%), Gaps = 17/112 (15%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
                +    E+A + +  AI    +D +                  ++N A  L  +  
Sbjct: 30  MGRGSEFGDYEKAAEAFTKAIEENKEDAI-----------------PYINFANLLSSVNE 72

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED 201
            E A+      L  D +   A +  G           A++ F KA +   E+
Sbjct: 73  LERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN 124

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 47.5 bits (114), Expect = 1e-06
 Identities = 14/94 (14%), Positives = 25/94 (26%), Gaps = 17/94 (18%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
           G  L  E  L+EA+ Q+                      A A       N        + 
Sbjct: 166 GMCLANEGMLDEALSQFAAVTEQDPGH------------ADA-----FYNAGVTYAYKEN 208

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQ 183
            E+A+      +    +++ AL  +         
Sbjct: 209 REKALEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 46.7 bits (112), Expect = 2e-06
 Identities = 9/129 (6%), Positives = 34/129 (26%), Gaps = 19/129 (14%)

Query: 99  LEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS 158
           +  +   +  +                      + +           +   YE+A    +
Sbjct: 1   MGSSHHHHHHSS-------------GLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFT 47

Query: 159 LVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK----SIARELRLLAEH 214
             + E++ +           + + + + A   + KA +                 +   +
Sbjct: 48  KAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMY 107

Query: 215 EKAV--YKK 221
           ++A   ++K
Sbjct: 108 KEAKDMFEK 116

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 54.9 bits (131), Expect = 1e-09
 Identities = 28/156 (17%), Positives = 49/156 (31%), Gaps = 20/156 (12%)

Query: 74  MTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVK 133
           M   + +  A     D        + +EA      A+         + F      A    
Sbjct: 2   MKPLKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAF--- 58

Query: 134 NPCHLNMAACLLKLKRYEEAIGQCSLVLG-----------EDENNVKALFRRGKARAELG 182
             CH  +A  L  L+ ++EA+      L            E +  + A++ R  A   LG
Sbjct: 59  --CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLG 116

Query: 183 QTDAAREDFLKAGKFAPEDK----SIARELRLLAEH 214
           +   A  +F K  +   E K       R + +  + 
Sbjct: 117 RGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDR 152

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 52.7 bits (127), Expect = 3e-09
 Identities = 16/117 (13%), Positives = 37/117 (31%), Gaps = 19/117 (16%)

Query: 99  LEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS 158
           ++   ++ E  +A   D+ +                     +     + ++++ A+    
Sbjct: 1   MQAITERLEAMLAQGTDNMLL-----------------RFTLGKTYAEHEQFDAALPHLR 43

Query: 159 LVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE--DKSIARELRLLAE 213
             L  D     A    GK     G    AR+ +      A    D+ + +EL++   
Sbjct: 44  AALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLR 100

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 54.6 bits (132), Expect = 5e-09
 Identities = 22/158 (13%), Positives = 42/158 (26%), Gaps = 25/158 (15%)

Query: 90  GNALFKEEKLEEAMQQYEMAI--------AYMGDDFMFQLFGKYRDMALAVK-------- 133
           G AL+   + + A                  +      Q   + +   +  +        
Sbjct: 118 GIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKE 177

Query: 134 NPCHLNMAACLLKLK---RYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAARED 190
                 +   L  +      E      +      E+  +  F  GK    LG  D+A   
Sbjct: 178 QWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATAL 237

Query: 191 FLKAGKFAPED----KSIARELRLLAEHEKAV--YKKQ 222
           F  A      +    +    EL LL + +  +    +Q
Sbjct: 238 FKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQQ 275

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 54.2 bits (131), Expect = 7e-09
 Identities = 21/112 (18%), Positives = 31/112 (27%), Gaps = 17/112 (15%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
           G           A   +  A+A               DM           +   L +   
Sbjct: 50  GVLYDSLGLRALARNDFSQALAI------------RPDMPEV-----FNYLGIYLTQAGN 92

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED 201
           ++ A      VL  D     A   RG A    G+   A++D L   +  P D
Sbjct: 93  FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND 144

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 4/73 (5%)

Query: 133 KNPCHLNMAACLLKLKRYEEAIGQCSLVL----GEDENNVKALFRRGKARAELGQTDAAR 188
                  +A  L    + E  + +   +L      D+   + L+ RG     LG    AR
Sbjct: 4   SWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALAR 63

Query: 189 EDFLKAGKFAPED 201
            DF +A    P+ 
Sbjct: 64  NDFSQALAIRPDM 76

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 53.2 bits (129), Expect = 6e-09
 Identities = 21/140 (15%), Positives = 42/140 (30%), Gaps = 27/140 (19%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
           G +  K  +  +A+   E        D                     L++    +K   
Sbjct: 15  GISHAKAGRYSQAVMLLEQVYDADAFD------------VDV-----ALHLGIAYVKTGA 57

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED------KS 203
            +         L +  +NVK     G    ++ + D A    +K  +  P +        
Sbjct: 58  VDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLG 117

Query: 204 IARELRLLAEHEKAV--YKK 221
           +A  L  L   ++A+  +K 
Sbjct: 118 VA--LDNLGRFDEAIDSFKI 135

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 52.1 bits (126), Expect = 2e-08
 Identities = 28/142 (19%), Positives = 51/142 (35%), Gaps = 31/142 (21%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNP----CHLNMAACLL 145
           G A  K   ++   +  E ++A                       P        +    +
Sbjct: 49  GIAYVKTGAVDRGTELLERSLAD---------------------APDNVKVATVLGLTYV 87

Query: 146 KLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED---- 201
           ++++Y+ A+     V   +  N    FR G A   LG+ D A + F  A    P +    
Sbjct: 88  QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVH 147

Query: 202 KSIARELRLLAEHEKAV--YKK 221
           ++IA     +  HE+A+  +KK
Sbjct: 148 RAIAFSYEQMGRHEEALPHFKK 169

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 42.8 bits (102), Expect = 3e-05
 Identities = 12/58 (20%), Positives = 20/58 (34%)

Query: 137 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKA 194
           + +      K  RY +A+     V   D  +V      G A  + G  D   E   ++
Sbjct: 11  YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERS 68

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356

 Score = 54.8 bits (132), Expect = 6e-09
 Identities = 20/52 (38%), Positives = 27/52 (51%)

Query: 12  GLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD 63
           GL   V +MK GE AL+ +  E  YG   S     V P + ++YEV L+ F 
Sbjct: 303 GLDRAVLNMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSFV 354

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356

 Score = 45.2 bits (107), Expect = 9e-06
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 2/78 (2%)

Query: 10  MTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGK 69
           + G   G+ +MK GE+AL  +  EL YG+ G  S P +   A L ++V L+ +   ++  
Sbjct: 67  IKGWDQGIKTMKKGENALFTIPPELAYGESG--SPPTIPANATLQFDVELLSWTSVRDIA 124

Query: 70  ARSDMTVEERIGAADRRK 87
               +  +          
Sbjct: 125 KDGGIFKKILKEGDKWEN 142

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356

 Score = 43.3 bits (102), Expect = 4e-05
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 12  GLAIGVSSMKAGEHALLHVGWELGYGKEGSFSF---PNVSPMADLVYEVVLIGFDET 65
            LA  V +MK GE  LL V  + G+G+ G  +      V P A LV ++ L+ +   
Sbjct: 181 ALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTV 237

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 53.3 bits (129), Expect = 8e-09
 Identities = 16/110 (14%), Positives = 31/110 (28%), Gaps = 18/110 (16%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
           G       + ++A    + A+A               D            +A   L + R
Sbjct: 125 GLVYALLGERDKAEASLKQALAL-------------EDTPEI-----RSALAELYLSMGR 166

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAP 199
            +EA+ Q +  L +   ++    R   A    G+ + A            
Sbjct: 167 LDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHHH 216

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 46.4 bits (111), Expect = 2e-06
 Identities = 23/141 (16%), Positives = 40/141 (28%), Gaps = 31/141 (21%)

Query: 90  GNALFKEEKLEEAMQQYEMAIA-------------------YMGDDFMFQLFGKYR---- 126
                K   +  A++  +  +A                   Y   +   +  G       
Sbjct: 46  ARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALS 105

Query: 127 --DMALAVKNP----CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAE 180
               A  V NP     HL        L   ++A       L   E+  +      +    
Sbjct: 106 VLKDAERV-NPRYAPLHLQRGLVYALLGERDKAEASLKQAL-ALEDTPEIRSALAELYLS 163

Query: 181 LGQTDAAREDFLKAGKFAPED 201
           +G+ D A   + KA + AP+D
Sbjct: 164 MGRLDEALAQYAKALEQAPKD 184

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 42.1 bits (100), Expect = 5e-05
 Identities = 14/58 (24%), Positives = 26/58 (44%)

Query: 137 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKA 194
            L +   L  L RY+ A+      L E+  + +AL+   + + +LG  + A E+    
Sbjct: 8   PLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTL 65

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 41.8 bits (99), Expect = 7e-05
 Identities = 16/123 (13%), Positives = 30/123 (24%), Gaps = 28/123 (22%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
           G  L+   + + A+  +E A+     D                       +A   LKL  
Sbjct: 12  GVQLYALGRYDAALTLFERALKENPQDPE-----------------ALYWLARTQLKLGL 54

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKA-----------RAELGQTDAAREDFLKAGKFA 198
              A+     ++      +       +A               G  + A      A +  
Sbjct: 55  VNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN 114

Query: 199 PED 201
           P  
Sbjct: 115 PRY 117

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 135

 Score = 51.2 bits (123), Expect = 1e-08
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 12  GLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKE 67
            L + V  M  GE A++    +  YG +GS S P + P A L  EV L    +  +
Sbjct: 72  ALDLSVPLMDVGETAMVTADSKYCYGPQGSRS-PYIPPHAALCLEVTLKTAVDRPD 126

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 54.3 bits (130), Expect = 2e-08
 Identities = 13/112 (11%), Positives = 26/112 (23%), Gaps = 17/112 (15%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
           G      E ++  +     A     D              +A       +       L+ 
Sbjct: 301 GGGKQALETVQRLLPVLCQAHGLTPDQ------------VVA-----IASHDGGKQALET 343

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED 201
            +  +       G   + V A+   G  +  L           +A    P+ 
Sbjct: 344 VQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQ 395

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 53.9 bits (129), Expect = 2e-08
 Identities = 14/146 (9%), Positives = 33/146 (22%), Gaps = 18/146 (12%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
                  E ++  +     A     D              +A       +       L+ 
Sbjct: 267 IGGKQALETVQRLLPVLCQAHGLTPDQ------------VVA-----IASHGGGKQALET 309

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELR 209
            +  +       G   + V A+      +  L           +A    P+   +A    
Sbjct: 310 VQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQ-VVAIASN 368

Query: 210 LLAEHEKAVYKKQKEIYKGIFGPRPE 235
              +      ++   +     G  P+
Sbjct: 369 GGGKQALETVQRLLPVLCQAHGLTPD 394

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 53.5 bits (128), Expect = 3e-08
 Identities = 13/150 (8%), Positives = 31/150 (20%), Gaps = 21/150 (14%)

Query: 90  GNALFKEEKLEEAMQQYEMAI--------AYMGDDFMFQLFGKYR------DMALAVK-- 133
                    ++  +     A         A   +    Q     +        A  +   
Sbjct: 504 IGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPD 563

Query: 134 -NPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFL 192
                 +       L+  +  +       G  +  V A+      +  L           
Sbjct: 564 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLC 623

Query: 193 KAGKFAPED----KSIARELRLLAEHEKAV 218
           +A    P       S     + L   ++ +
Sbjct: 624 QAHGLTPAQVVAIASHDGGKQALETVQRLL 653

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 53.1 bits (127), Expect = 3e-08
 Identities = 14/146 (9%), Positives = 31/146 (21%), Gaps = 18/146 (12%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
           G      E ++  +     A                    +A       +       L+ 
Sbjct: 572 GGGKQALETVQRLLPVLCQAHGLTQVQ------------VVA-----IASNIGGKQALET 614

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELR 209
            +  +       G     V A+      +  L           +A    P+   +A    
Sbjct: 615 VQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQ-VVAIASN 673

Query: 210 LLAEHEKAVYKKQKEIYKGIFGPRPE 235
              +      ++   +     G   E
Sbjct: 674 GGGKQALETVQRLLPVLCQAHGLTQE 699

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 52.7 bits (126), Expect = 5e-08
 Identities = 15/166 (9%), Positives = 35/166 (21%), Gaps = 18/166 (10%)

Query: 90  GNALFKEEKLEEAMQQYEMAI--------AYMGDDFMFQLFGKYR------DMALAVKN- 134
                  E ++  +     A         A   +    Q     +        A  +   
Sbjct: 640 DGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQE 699

Query: 135 --PCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFL 192
                 +       L+  +  +       G   + V A+   G  +  L           
Sbjct: 700 QVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLC 759

Query: 193 KAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQ 238
           +A    P    +A    +  +      ++   +     G       
Sbjct: 760 QAHGLTPAQ-VVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVV 804

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 52.3 bits (125), Expect = 7e-08
 Identities = 11/112 (9%), Positives = 23/112 (20%), Gaps = 17/112 (15%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
                  E ++  +     A                    +A       +       L+ 
Sbjct: 606 IGGKQALETVQRLLPVLCQAHGLT------------PAQVVA-----IASHDGGKQALET 648

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED 201
            +  +       G   + V A+   G  +  L           +A     E 
Sbjct: 649 VQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQ 700

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 52.0 bits (124), Expect = 1e-07
 Identities = 12/112 (10%), Positives = 25/112 (22%), Gaps = 17/112 (15%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
                  E ++  +     A     D              +A       +       L+ 
Sbjct: 233 DGGKQALETMQRLLPVLCQAHGLPPDQ------------VVA-----IASNIGGKQALET 275

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED 201
            +  +       G   + V A+   G  +  L           +A    P+ 
Sbjct: 276 VQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQ 327

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 51.6 bits (123), Expect = 1e-07
 Identities = 15/164 (9%), Positives = 33/164 (20%), Gaps = 18/164 (10%)

Query: 90  GNALFKEEKLEEAMQQYEMAI--------AYMGDDFMFQLFGKYRDM------ALAVKNP 135
                  E ++  +               A    D   Q     + +      A  +   
Sbjct: 436 DGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPD 495

Query: 136 C---HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFL 192
                 +       L   +  +       G   + V A+   G  +  L           
Sbjct: 496 QVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLC 555

Query: 193 KAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEP 236
           +A    P+    A       +      ++   +     G     
Sbjct: 556 QAHGLTPDQVV-AIASNGGGKQALETVQRLLPVLCQAHGLTQVQ 598

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 51.6 bits (123), Expect = 1e-07
 Identities = 12/142 (8%), Positives = 31/142 (21%), Gaps = 23/142 (16%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
                  E ++  +     A                    +A       +       L+ 
Sbjct: 199 NGGKQALETVQRLLPVLCQAHGLTPAQ------------VVA-----IASHDGGKQALET 241

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED----KSIA 205
            +  +       G   + V A+      +  L           +A    P+      S  
Sbjct: 242 MQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHG 301

Query: 206 RELRLLAEHEKAV--YKKQKEI 225
              + L   ++ +    +   +
Sbjct: 302 GGKQALETVQRLLPVLCQAHGL 323

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 45.4 bits (107), Expect = 1e-05
 Identities = 13/122 (10%), Positives = 24/122 (19%), Gaps = 18/122 (14%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLFGKYRDMALAVKNPC------ 136
           G      E ++  +     A     D  +        Q         L V          
Sbjct: 369 GGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQALETV-QRLLPVLCQAHGLTPD 427

Query: 137 ----HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFL 192
                 +       L+  +  +       G     V A+      +  L           
Sbjct: 428 QVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLC 487

Query: 193 KA 194
           +A
Sbjct: 488 QA 489

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 45.0 bits (106), Expect = 1e-05
 Identities = 20/159 (12%), Positives = 37/159 (23%), Gaps = 14/159 (8%)

Query: 56  EVVLIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEK-LEEAMQQYE----MAI 110
             V + +         +       +G          AL  +   L     Q +    + I
Sbjct: 102 GTVAVTYQHIITALPEATHEDIVGVGKQWSGARALEALLTDAGELRGPPLQLDTGQLVKI 161

Query: 111 AYMGDDFMFQLFGKYRDMALAVK----NP----CHLNMAACLLKLKRYEEAIGQCSLVLG 162
           A  G     +     R+ AL        P       +       L+  +  +       G
Sbjct: 162 AKRGGVTAMEAVHASRN-ALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHG 220

Query: 163 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED 201
                V A+      +  L           +A    P+ 
Sbjct: 221 LTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQ 259

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 53.3 bits (128), Expect = 2e-08
 Identities = 16/119 (13%), Positives = 30/119 (25%), Gaps = 17/119 (14%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
            +A              +  +A                            +       +R
Sbjct: 30  ADAELGMGDTTAGEMAVQRGLALHPGHP-----------------EAVARLGRVRWTQQR 72

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIAREL 208
           + EA             +       G A  + GQ +AA   + +A +  PE+  I  +L
Sbjct: 73  HAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQL 131

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 49.8 bits (119), Expect = 3e-07
 Identities = 20/124 (16%), Positives = 33/124 (26%), Gaps = 21/124 (16%)

Query: 99  LEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS 158
               + Q   A+ +   DF                    L +A   L +           
Sbjct: 5   GPRELLQLRAAVRHRPQDF-----------------VAWLMLADAELGMGDTTAGEMAVQ 47

Query: 159 LVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED----KSIARELRLLAEH 214
             L     + +A+ R G+ R    +   A     +A   APE       +   L    + 
Sbjct: 48  RGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQA 107

Query: 215 EKAV 218
           E A 
Sbjct: 108 EAAA 111

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 39.4 bits (92), Expect = 7e-04
 Identities = 8/69 (11%), Positives = 14/69 (20%), Gaps = 3/69 (4%)

Query: 149 RYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIAREL 208
                + Q    +     +  A      A   +G T A      +     P        +
Sbjct: 4   DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH---PEAV 60

Query: 209 RLLAEHEKA 217
             L      
Sbjct: 61  ARLGRVRWT 69

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 50.1 bits (121), Expect = 3e-08
 Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 23/125 (18%)

Query: 90  GNALFKEEKLEEAMQQYEMAI--------AY--MGDDFMFQLFGKYR------DMALAVK 133
           GNA +K+   +EA++ Y+ A+        A+  +G+ +  Q  G Y         AL + 
Sbjct: 8   GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ--GDYDEAIEYYQKALELD 65

Query: 134 NP----CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAARE 189
            P       N+     K   Y+EAI      L  D  + +A +  G A  + G  D A E
Sbjct: 66  -PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE 124

Query: 190 DFLKA 194
            + KA
Sbjct: 125 YYQKA 129

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 37.8 bits (89), Expect = 7e-04
 Identities = 17/58 (29%), Positives = 24/58 (41%)

Query: 137 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKA 194
             N+     K   Y+EAI      L  D  + +A +  G A  + G  D A E + KA
Sbjct: 4   WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 61

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 50.1 bits (121), Expect = 3e-08
 Identities = 28/109 (25%), Positives = 42/109 (38%), Gaps = 25/109 (22%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNP----CHLNMAACLL 145
           GNA +K+   +EA++ Y+ A+                       +P       N+     
Sbjct: 16  GNAYYKQGDYDEAIEYYQKALEL---------------------DPNNAEAWYNLGNAYY 54

Query: 146 KLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKA 194
           K   Y+EAI      L  D NN +A +  G A  + G  D A E + KA
Sbjct: 55  KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 103

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 49.7 bits (119), Expect = 4e-08
 Identities = 20/120 (16%), Positives = 40/120 (33%), Gaps = 14/120 (11%)

Query: 98  KLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQC 157
              +A+  YE AIA              +D+A       +L + +    L  Y +A    
Sbjct: 5   LEAQAVPYYEKAIASGLQG---------KDLAEC-----YLGLGSTFRTLGEYRKAEAVL 50

Query: 158 SLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKA 217
           +  + +  N+             LG+ +   E  LK      +D++I    + +  +   
Sbjct: 51  ANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILFYADK 110

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 50.3 bits (120), Expect = 4e-08
 Identities = 21/136 (15%), Positives = 38/136 (27%), Gaps = 18/136 (13%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
               ++    E+A   ++        D  F                  L + AC   + +
Sbjct: 28  AFNQYQSGXYEDAHXVFQALCVLDHYDSRF-----------------FLGLGACRQAMGQ 70

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELR 209
           Y+ AI   S     D    +  F   +   + G+   A      A +    +     EL 
Sbjct: 71  YDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA-NXPEFXELS 129

Query: 210 LLAEHEKAVYKKQKEI 225
                     K +KE+
Sbjct: 130 TRVSSMLEAIKLKKEM 145

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 41.4 bits (97), Expect = 4e-05
 Identities = 11/63 (17%), Positives = 21/63 (33%)

Query: 139 NMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFA 198
           ++A    +   YE+A      +   D  + +     G  R  +GQ D A   +       
Sbjct: 26  SLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85

Query: 199 PED 201
             +
Sbjct: 86  IXE 88

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 51.9 bits (125), Expect = 5e-08
 Identities = 18/123 (14%), Positives = 39/123 (31%), Gaps = 19/123 (15%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDF--------MFQLFGKYR------DMALAVKNP 135
                   +  E       A+    +D         ++ L   Y         A+ +  P
Sbjct: 145 DFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL-RP 203

Query: 136 ----CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDF 191
                   + A L    R +EA+   +  L  +   V+ ++    + + + Q D A +  
Sbjct: 204 DDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQL 263

Query: 192 LKA 194
           ++A
Sbjct: 264 VRA 266

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 14/112 (12%), Positives = 29/112 (25%), Gaps = 2/112 (1%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
             +   E     A+      +         QL        + + +    +          
Sbjct: 96  AVSHTNEHNANAALASLRAWLLSQPQYE--QLGSVNLQADVDIDDLNVQSEDFFFAAPNE 153

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED 201
           Y E        L  + N+ +     G         D+A  +  +A +  P+D
Sbjct: 154 YRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD 205

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 12/105 (11%), Positives = 27/105 (25%), Gaps = 17/105 (16%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
           G ++ K   L EA   +E            Q   +  +           ++     + ++
Sbjct: 28  GLSMLKLANLAEAALAFEAVC---------QAAPEREE--------AWRSLGLTQAENEK 70

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKA 194
              AI   +     D  ++        +       +AA       
Sbjct: 71  DGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAW 115

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 16/78 (20%), Positives = 22/78 (28%), Gaps = 5/78 (6%)

Query: 129 ALAVKNP-----CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQ 183
                NP       +     +LKL    EA      V        +A    G  +AE  +
Sbjct: 11  PFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEK 70

Query: 184 TDAAREDFLKAGKFAPED 201
              A      A    P+D
Sbjct: 71  DGLAIIALNHARMLDPKD 88

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 14/95 (14%), Positives = 23/95 (24%), Gaps = 25/95 (26%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNP----CHLNMAACLL 145
           G  L    + +EA+  Y  A+                       NP       NMA    
Sbjct: 213 GATLANGNRPQEALDAYNRALDI---------------------NPGYVRVMYNMAVSYS 251

Query: 146 KLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAE 180
            + +Y+ A  Q    +              +    
Sbjct: 252 NMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATR 286

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens} Length = 157

 Score = 49.4 bits (118), Expect = 9e-08
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 12  GLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKE 67
            L + V  M  GE A++    +  YG +GS S P + P A L  EV L    + + 
Sbjct: 98  ALDLSVPLMDVGETAMVTADSKYCYGPQGSRS-PYIPPHAALCLEVTLKTAVDLEH 152

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 48.6 bits (116), Expect = 9e-08
 Identities = 12/111 (10%), Positives = 27/111 (24%), Gaps = 17/111 (15%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
           G ++ K   L EA   +E       +                       ++     + ++
Sbjct: 24  GLSMLKLANLAEAALAFEAVCQKEPEREE-----------------AWRSLGLTQAENEK 66

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE 200
              AI   +     D  ++        +       +AA           P+
Sbjct: 67  DGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 45.9 bits (109), Expect = 8e-07
 Identities = 14/68 (20%), Positives = 23/68 (33%)

Query: 134 NPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLK 193
           +   +     +LKL    EA      V  ++    +A    G  +AE  +   A      
Sbjct: 17  HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNH 76

Query: 194 AGKFAPED 201
           A    P+D
Sbjct: 77  ARMLDPKD 84

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 50.9 bits (121), Expect = 1e-07
 Identities = 24/175 (13%), Positives = 52/175 (29%), Gaps = 20/175 (11%)

Query: 66  KEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKY 125
            +    + +    +  + +   M    L K ++L+ A ++ +       D  + QL   +
Sbjct: 113 YDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAW 172

Query: 126 RDMALAVKN-------------------PCHLNMAACLLKLKRYEEAIGQCSLVLGEDEN 166
             +A   +                          AAC +   R+E A G     L +D  
Sbjct: 173 VSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232

Query: 167 NVKALFRRGKARAELGQTDAAREDFL-KAGKFAPEDKSIARELRLLAEHEKAVYK 220
           + + L         LG+       +L +          I        + ++ V +
Sbjct: 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRAKENDFDRLVLQ 287

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 17/129 (13%), Positives = 31/129 (24%), Gaps = 25/129 (19%)

Query: 98  KLEEAMQQYEMAIAY----------MGDDFMFQLFGKYRDM----------ALAVKNP-- 135
           + E A    E    +          M          + ++               +NP  
Sbjct: 4   EFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFK 63

Query: 136 ---CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFL 192
                       LK       I      + +D  + +A    G  +AE     AA     
Sbjct: 64  DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQ 123

Query: 193 KAGKFAPED 201
           +  +  P +
Sbjct: 124 RCLELQPNN 132

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 18/105 (17%), Positives = 32/105 (30%), Gaps = 17/105 (16%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
           G       +   A+  +  A+    +D                       + A L    R
Sbjct: 220 GVLFHLSGEFNRAIDAFNAALTVRPED------------YSL-----WNRLGATLANGDR 262

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKA 194
            EEA+   +  L      +++ +  G +   LG    A  +FL A
Sbjct: 263 SEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTA 307

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 45.4 bits (108), Expect = 7e-06
 Identities = 12/150 (8%), Positives = 39/150 (26%), Gaps = 35/150 (23%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
           G    + E  + A+   +  +    ++                     + +A        
Sbjct: 106 GITQAENENEQAAIVALQRCLELQPNNL-----------------KALMALAVSYTNTSH 148

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRG----------KARAELGQTDAAREDFLKAGKFAP 199
            ++A       + ++      +  +           K+  +    +  +E +L+A     
Sbjct: 149 QQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNG 208

Query: 200 EDK------SIARELRLLAEHEKAV--YKK 221
           +         +     L  E  +A+  +  
Sbjct: 209 DMIDPDLQTGLGVLFHLSGEFNRAIDAFNA 238

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 18/113 (15%), Positives = 38/113 (33%), Gaps = 9/113 (7%)

Query: 96  EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVK-------NPCHLNMAACLLKLK 148
           + +LEE  ++   A  ++ D     L     D     +       +P         L+  
Sbjct: 21  QAELEEMAKRDAEAHPWLSDYD--DLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEG 78

Query: 149 RYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED 201
               A+      + +D  +++A    G  +AE  Q   A     +  +  P++
Sbjct: 79  DLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDN 131

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 48.9 bits (117), Expect = 6e-07
 Identities = 18/125 (14%), Positives = 33/125 (26%), Gaps = 17/125 (13%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
           G    +E  L  A+  +E A+         Q   K+ +            +     + ++
Sbjct: 71  GLRRLQEGDLPNAVLLFEAAV---------QQDPKHME--------AWQYLGTTQAENEQ 113

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELR 209
              AI      L    +N  AL     +         A E      ++ P    +     
Sbjct: 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAE 173

Query: 210 LLAEH 214
             A  
Sbjct: 174 EGAGG 178

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 48.9 bits (117), Expect = 6e-07
 Identities = 14/106 (13%), Positives = 31/106 (29%), Gaps = 15/106 (14%)

Query: 89  DGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK 148
              +L  +    E  + +  A+         +L     D            +        
Sbjct: 187 ILGSLLSDSLFLEVKELFLAAV---------RLDPTSID-PDV-----QCGLGVLFNLSG 231

Query: 149 RYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKA 194
            Y++A+   +  L    N+     + G   A   Q++ A   + +A
Sbjct: 232 EYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRA 277

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 17/114 (14%), Positives = 29/114 (25%), Gaps = 4/114 (3%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
             +   E    +A +     + Y        L     + A          +   LL    
Sbjct: 139 AVSFTNESLQRQACEILRDWLRYTPAY--AHLVTPAEEGAGGAGLGPSKRILGSLLSDSL 196

Query: 150 YEEAIGQCSLVLGEDENNVKA--LFRRGKARAELGQTDAAREDFLKAGKFAPED 201
           + E        +  D  ++        G      G+ D A + F  A    P D
Sbjct: 197 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND 250

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 19/120 (15%), Positives = 30/120 (25%), Gaps = 36/120 (30%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNP----CHLNMAACLL 145
           G  L    + EEA+  Y  A+                        P       N+    +
Sbjct: 258 GATLANGNQSEEAVAAYRRALEL---------------------QPGYIRSRYNLGISCI 296

Query: 146 KLKRYEEAIGQCSLVLGEDENNVKALFRR-----------GKARAELGQTDAAREDFLKA 194
            L  + EA+      L     +                    A + LGQ+DA      + 
Sbjct: 297 NLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 51.1 bits (122), Expect = 1e-07
 Identities = 17/114 (14%), Positives = 37/114 (32%), Gaps = 2/114 (1%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFM--FQLFGKYRDMALAVKNPCHLNMAACLLKL 147
                ++++ ++A++  + A+ Y+ ++     Q+   YR     V N     M      L
Sbjct: 254 AKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLL 313

Query: 148 KRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED 201
           +    A+         ++N  +         A   Q + A   F K        
Sbjct: 314 ELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTP 367

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280

 Score = 50.2 bits (120), Expect = 2e-07
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 4   GKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD 63
           G+      GL   +  M+ GEH+++++     +G  G      + P A+L YE+ L  F+
Sbjct: 215 GENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGK-EKFQIPPNAELKYELHLKSFE 273

Query: 64  ETKE 67
           + KE
Sbjct: 274 KAKE 277

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 2/69 (2%)

Query: 12  GLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKAR 71
              I +++MK GE   +    E  YG  G  S P + P A LV+EV L  F      +  
Sbjct: 109 AWDIAIATMKVGEVCHITCKPEYAYGSAG--SPPKIPPNATLVFEVELFEFKGEDLTEEE 166

Query: 72  SDMTVEERI 80
               +    
Sbjct: 167 DGGIIRRIQ 175

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A Length = 118

 Score = 47.6 bits (114), Expect = 2e-07
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 12  GLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDE 64
            L + V  M  GE A++    +  YG +G    P + P A L  EV L    +
Sbjct: 68  ALDLSVPLMDVGETAMVTADSKYCYGPQG--RSPYIPPHAALCLEVTLKTAVD 118

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 45.3 bits (108), Expect = 1e-06
 Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 4/73 (5%)

Query: 132 VKNP----CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAA 187
           +++P        +A   LK      A+     ++  D + V   +  GK    L +TD A
Sbjct: 1   MEDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDA 60

Query: 188 REDFLKAGKFAPE 200
            + + +  + A E
Sbjct: 61  IDTYAQGIEVARE 73

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} PDB: 1pbk_A* Length = 119

 Score = 43.4 bits (103), Expect = 7e-06
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 15  IGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD 63
             + +M  GE A L +  E  YGK+G      + P   L++EV L+  D
Sbjct: 72  EALLTMSKGEKARLEIEPEWAYGKKG-QPDAKIPPNTKLIFEVELVDID 119

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A Length = 129

 Score = 43.0 bits (102), Expect = 1e-05
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 15  IGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETK 66
           I VSSM+  E  L+ +    GYG EG     ++   + L++E+ L+ F E +
Sbjct: 80  ICVSSMRKNEKCLVRIESMYGYGDEG--CGESIPGNSVLLFEIELLSFRELE 129

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 44.6 bits (105), Expect = 2e-05
 Identities = 18/109 (16%), Positives = 33/109 (30%), Gaps = 18/109 (16%)

Query: 96  EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRY-EEAI 154
           +E++E+ +QQ E  +     +                     +     L     Y  EA 
Sbjct: 81  QEEMEKTLQQMEEVLGSAQVEAQA-----------------LMLKGKALNVTPDYSPEAE 123

Query: 155 GQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKS 203
              S  +  +   V+A  + G+   + G   +A   F  A        S
Sbjct: 124 VLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVS 172

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 44.2 bits (104), Expect = 2e-05
 Identities = 23/143 (16%), Positives = 37/143 (25%), Gaps = 27/143 (18%)

Query: 90  GNALF--------KEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMA 141
           GNA            +  ++A+  Y  A          ++  K            HLN A
Sbjct: 220 GNAYLSLYFNTGQNPKISQQALSAYAQAE---------KVDRKASSNPDL-----HLNRA 265

Query: 142 ACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED 201
                 + Y EA+   S     D    +   R  +    L +  +  E   K        
Sbjct: 266 TLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKP----- 320

Query: 202 KSIARELRLLAEHEKAVYKKQKE 224
           K +   L  L           + 
Sbjct: 321 KKLQSMLGSLRPAHLGPCGDGRY 343

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 23/115 (20%), Positives = 41/115 (35%), Gaps = 15/115 (13%)

Query: 90  GNALFKEEKLEEAMQQYEMAI--AYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKL 147
                +EE+ +  +Q+ +  +   Y   D  F+       +  A +    +         
Sbjct: 34  SMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETH----SVEDAGRKQQDVQ-------- 81

Query: 148 KRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQ-TDAAREDFLKAGKFAPED 201
           +  E+ + Q   VLG  +   +AL  +GKA       +  A     KA K  PE 
Sbjct: 82  EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL 136

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 40.8 bits (95), Expect = 3e-04
 Identities = 20/174 (11%), Positives = 42/174 (24%), Gaps = 40/174 (22%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAY----------------MGDDFMFQLFGKYR------D 127
           G   +K+  +  A   +  A+ +                +  D   +             
Sbjct: 144 GEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAK 203

Query: 128 MALAVKN---PCHLNMAACLL--------KLKRYEEAIG--QCSLVLGEDE-NNVKALFR 173
           +A+ +          +    L          K  ++A+     +  +     +N      
Sbjct: 204 LAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLN 263

Query: 174 RGKARAELGQTDAAREDFLKAGKFAPEDKS----IARELRLLAEHEKAVYKKQK 223
           R            A E F +A    P          + L  L+     +  K K
Sbjct: 264 RATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 14/127 (11%), Positives = 29/127 (22%), Gaps = 20/127 (15%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKL-- 147
           G     +     ++  Y  A+   G++                    +  +A  L     
Sbjct: 51  GEYYLWQNDYSNSLLAYRQALQLRGENAEL-----------------YAALATVLYYQAS 93

Query: 148 -KRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIAR 206
                +        L  D N + AL               A E + K         +  +
Sbjct: 94  QHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153

Query: 207 ELRLLAE 213
            +  +  
Sbjct: 154 LVESINM 160

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens} Length = 102

 Score = 41.0 bits (97), Expect = 3e-05
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 15  IGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKE 67
            G+  M  GE   L +  ELGYG+ G  + P +   A LV+EV L+  +   E
Sbjct: 51  QGLLGMCEGEKRKLVIPSELGYGERG--APPKIPGGATLVFEVELLKIERRTE 101

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens} Length = 125

 Score = 41.5 bits (98), Expect = 4e-05
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 12  GLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF 62
           G   G+  M  GE   L +   LGYGKEG      + P + L++ + L+  
Sbjct: 74  GWDQGLKGMCVGEKRKLIIPPALGYGKEGK---GKIPPESTLIFNIDLLEI 121

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ... Length = 107

 Score = 41.0 bits (97), Expect = 4e-05
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 15  IGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD 63
            GV+ M  G+ A L +  +  YG  G      + P A LV++V L+  +
Sbjct: 61  EGVAQMSVGQRAKLTISPDYAYGATG--HPGIIPPHATLVFDVELLKLE 107

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A Length = 128

 Score = 41.1 bits (97), Expect = 5e-05
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 15  IGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF 62
           IGV++MK GE   L    E  YG  G  S P +   A L +E+ L+ F
Sbjct: 80  IGVATMKKGEICHLLCKPEYAYGSAG--SLPKIPSNATLFFEIELLDF 125

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1 Length = 135

 Score = 41.1 bits (97), Expect = 5e-05
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)

Query: 15  IGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF 62
           +GV++M  GE A   +  + GYG  G  S P +   A L++EV L  +
Sbjct: 75  LGVATMTKGEVAEFTIRSDYGYGDAG--SPPKIPGGATLIFEVELFEW 120

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens} Length = 134

 Score = 40.7 bits (96), Expect = 7e-05
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 12  GLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF 62
           G+ +G+ SM+ GE A         YG  G    P + P   +++E+ L+ F
Sbjct: 84  GMELGLLSMRRGELARFLFKPNYAYGTLG--CPPLIPPNTTVLFEIELLDF 132

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 40.0 bits (94), Expect = 7e-05
 Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 1/69 (1%)

Query: 137 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNV-KALFRRGKARAELGQTDAAREDFLKAG 195
            L     L+     E A+      L  +     +A +  G A  +LG    A  ++  A 
Sbjct: 3   QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62

Query: 196 KFAPEDKSI 204
           +  P+  ++
Sbjct: 63  ELNPDSPAL 71

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1 Length = 113

 Score = 39.5 bits (93), Expect = 1e-04
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 15  IGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD 63
           +G+  +  GE A L +     YG  G      + P + LV++V L+  +
Sbjct: 67  VGIPKLSVGEKARLTIPGPYAYGPRG--FPGLIPPNSTLVFDVELLKVN 113

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 18/137 (13%), Positives = 41/137 (29%), Gaps = 19/137 (13%)

Query: 83  ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAA 142
           A         L +   L +A+  Y+ A A      +F+   + R  A           + 
Sbjct: 115 AAMALDRAGKLMEPLDLSKAVHLYQQAAA------VFENEERLRQAAE-----LIGKASR 163

Query: 143 CLLKLKRYEEAI------GQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGK 196
            L++ ++++EA             +       K    +   +       AA++   ++  
Sbjct: 164 LLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYS 223

Query: 197 FAPEDKSIARELRLLAE 213
                 S   +   L +
Sbjct: 224 IPGFSGS--EDCAALED 238

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A Length = 144

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 15  IGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF 62
           IGV++MK GE   L    E  YG  G  S P +   A L +E+ L+ F
Sbjct: 96  IGVATMKKGEICHLLCKPEYAYGSAG--SLPKIPSNATLFFEIELLDF 141

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 37.4 bits (88), Expect = 4e-04
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 17/93 (18%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
           GNA +K+   +EA++ Y+ A+    ++            A A       N+     K   
Sbjct: 16  GNAYYKQGDYDEAIEYYQKALELDPNN------------AEA-----WYNLGNAYYKQGD 58

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELG 182
           Y+EAI      L  D NN +A    G A+ + G
Sbjct: 59  YDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 91

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 37.0 bits (87), Expect = 6e-04
 Identities = 19/58 (32%), Positives = 25/58 (43%)

Query: 137 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKA 194
             N+     K   Y+EAI      L  D NN +A +  G A  + G  D A E + KA
Sbjct: 12  WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1 Length = 167

 Score = 38.1 bits (89), Expect = 9e-04
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 2/73 (2%)

Query: 16  GVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMT 75
            +  M+ G+   L + ++L YG  G      + P + L ++V LI   +  +G+   ++ 
Sbjct: 97  ALQLMREGDRWRLFIPYDLAYGVTG--GGGMIPPYSPLEFDVELISIKDGGKGRTAEEVD 154

Query: 76  VEERIGAADRRKM 88
              R    DR  M
Sbjct: 155 EILRKAEEDREDM 167

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	266
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	100.0
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.97
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.97
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.9
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.89
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.86
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.85
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.85
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.81
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.81
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.8
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.78
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.77
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.76
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.76
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.76
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.75
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.74
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.73
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.73
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.71
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.69
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.69
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.68
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.68
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.68
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.67
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.67
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.66
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.66
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.66
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.66
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.66
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.64
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.63
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.63
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.62
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.62
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.61
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.6
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.6
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.6
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.6
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.59
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.59
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.57
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.57
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.57
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.56
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.55
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.55
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.55
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.55
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.54
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.53
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.53
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.53
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.52
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.52
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.52
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.52
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.52
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.51
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.51
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.5
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.5
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.5
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.5
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.49
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.49
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.48
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.48
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.48
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.48
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.48
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.48
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.48
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.47
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.47
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.47
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.47
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.46
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.46
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.46
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.46
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.45
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.45
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.44
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.44
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.43
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.43
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.43
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.42
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.42
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.42
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.42
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.41
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.4
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.4
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.39
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.38
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.38
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.36
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.36
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.36
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.34
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.33
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.32
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.32
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.32
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.31
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.31
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.3
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.3
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.3
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.29
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.29
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.29
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.28
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.28
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.27
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.27
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.27
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.25
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.25
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.24
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.24
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.24
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.24
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.24
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.22
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.22
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.22
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.21
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.21
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.21
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.21
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.2
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.19
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.19
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.19
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.18
1pc2_A	152	Mitochondria fission protein; unknown function; NM	99.18
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.17
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.17
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.16
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	99.16
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.16
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.15
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.15
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.15
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.14
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.14
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.13
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.13
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.13
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.13
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.13
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.12
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.12
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.11
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.11
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.1
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.09
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.07
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.07
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.06
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.04
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.04
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.03
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.03
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.02
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.01
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.01
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.0
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.99
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.98
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.97
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.93
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.93
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	98.92
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.92
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.92
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.9
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.9
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.89
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.88
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	98.88
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	98.88
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	98.87
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	98.87
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.87
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	98.86
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	98.86
2ppn_A	107	FK506-binding protein 1A; high resolution protein	98.85
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	98.85
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	98.85
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.85
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	98.84
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.83
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	98.83
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	98.81
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	98.81
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.81
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.8
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.79
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.77
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.75
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	98.74
2lkn_A	165	AH receptor-interacting protein; FKBP-type domain,	98.72
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	98.72
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.69
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.69
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.66
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	98.63
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	98.57
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.56
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.55
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.53
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	98.52
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.5
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	98.47
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	98.47
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.46
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.45
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	98.44
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	98.43
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	98.42
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.41
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.41
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.39
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.37
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.36
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.35
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	98.34
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	98.34
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.3
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	98.27
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.24
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.24
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.23
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.06
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.04
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.79
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.68
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.67
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	97.66
1hxv_A	113	Trigger factor; FKBP fold, ppiase, chaperone; NMR	97.6
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.4
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.33
3pr9_A	157	FKBP-type peptidyl-prolyl CIS-trans isomerase; FKB	97.28
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.19
1ix5_A	151	FKBP; ppiase, isomerase; NMR {Methanothermococcust	97.18
3cgm_A	158	SLYD, peptidyl-prolyl CIS-trans isomerase; chapero	97.12
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	97.06
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.05
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.05
2kr7_A	151	FKBP-type peptidyl-prolyl CIS-trans isomerase SLY;	97.02
3prb_A	231	FKBP-type peptidyl-prolyl CIS-trans isomerase; cha	96.97
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	96.94
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	96.89
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	96.88
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	96.77
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.33
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.29
1w26_A	432	Trigger factor, TF; chaperone, protein folding, ri	96.01
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	95.97
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	95.9
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	95.88
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	95.75
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	95.54
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	95.45
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	95.37
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.79
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	94.44
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	93.61
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	93.2
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	93.18
1t11_A	392	Trigger factor, TF; helix-turn-helix, four-helix-b	93.08
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	92.81
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	91.75
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	90.88
3mv2_A	325	Coatomer subunit alpha; vesicular membrane coat CO	90.62
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	88.65
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	88.33
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	87.99
3mkr_B	320	Coatomer subunit alpha; tetratricopeptide repeats	87.78
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	86.99
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	86.85
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	86.78
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	86.52
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	86.03
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	84.22
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	83.95
3ax2_A	73	Mitochondrial import receptor subunit TOM20 homol;	83.58
2v6x_A	85	Vacuolar protein sorting-associated protein 4; pro	81.45
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	81.02
1om2_A	95	Protein (mitochondrial import receptor subunit TOM	80.52

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=100.00  E-value=1.9e-34  Score=249.79  Aligned_cols=238  Identities=80%  Similarity=1.252  Sum_probs=179.6

Q ss_pred             ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeeccccccCCCCCCCCHHHHHH
Q 024531            2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIG   81 (266)
Q Consensus         2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~   81 (266)
                      +||.+.++|+||+.+|..|+.||++.|+|+|.++||..|...++.||+++.+.|.+.+..+....++...+.++.++++.
T Consensus        98 ~lg~~~~~i~g~e~~l~~m~~Ge~~~~~i~~~~~yg~~~~~~~~~ip~~~~l~f~v~L~~~~~~~e~~~~~~~~~~~~~~  177 (338)
T 2if4_A           98 VLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIG  177 (338)
T ss_dssp             ETTSCCGGGHHHHHHHHHCCBTCEEEEEECGGGSSCSSCCCSSSCCCTTCCEEEEEEEEEEECCCCCBTTTBCCHHHHHH
T ss_pred             EcCCCCcccHHHHHHHhcCCCCCeEEEEECHHHhcCCCCCCCCCCCCCCCcEEEEEEEEEecCCccccccccCCHHHHHH
Confidence            57876469999999999999999999999999999999976567899999999999999998887777789999999999


Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531           82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  161 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al  161 (266)
                      .+..++..|+.++..|+|++|+..|.+++.+.|.+......+...+....+...+++|+|.||.++|+|++|+.+|+++|
T Consensus       178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al  257 (338)
T 2if4_A          178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL  257 (338)
T ss_dssp             HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999987655455555566666677799999999999999999999999999


Q ss_pred             cCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCccc
Q 024531          162 GEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQK  239 (266)
Q Consensus       162 ~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~  239 (266)
                      .++|++.++++++|.+|..+|+|++|+.+|+++++++|+++.++..|..+....+...++++.+|+++|+..+...++
T Consensus       258 ~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~~  335 (338)
T 2if4_A          258 TEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGAK  335 (338)
T ss_dssp             HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------------
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCC
Confidence            999999999999999999999999999999999999999999999999998888888888889999999987766543

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.97  E-value=3.3e-29  Score=216.59  Aligned_cols=225  Identities=29%  Similarity=0.475  Sum_probs=201.2

Q ss_pred             ccCCCC--ccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeeccccccCCCCCCCCHHHH
Q 024531            2 VLGKEK--KEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEER   79 (266)
Q Consensus         2 ~lg~~~--~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~   79 (266)
                      ++|.+.  .+++|++.|+..|+.||++.+.++|.++|+..|... ..+|+++.+.|.+.+.++....+   .+.+.....
T Consensus        68 ~lG~g~~~~~~~~~e~al~~~~~Ge~~~l~i~p~~ayg~~g~~~-~~i~~~~~l~f~~~L~~~~~A~~---~~~~a~~~~  143 (336)
T 1p5q_A           68 EIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEK-FQIPPNAELKYELHLKSFEKAKE---SWEMNSEEK  143 (336)
T ss_dssp             ETTCGGGGTCCHHHHHHHTTCCTTCEEEEEECTTTTTTTTCBGG-GTBCSSCCEEEEEEEEEEECCCC---GGGCCHHHH
T ss_pred             EeCCCCccccchHHHHHHhcCCCCCeEEEEECCccccCcCCCCc-cCCCCCCeEEEEEEEeecccccc---hhcCCHHHH
Confidence            467662  369999999999999999999999999999999721 25899999999999999887665   788899999


Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531           80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  159 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~  159 (266)
                      +..+..+..+|+.++..|+|++|+..|.+++.+.|.....  ..+.......+...++.|+|.||.++|++++|+.+|++
T Consensus       144 p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~--~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~  221 (336)
T 1p5q_A          144 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSF--SNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNK  221 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCC--CSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccC--ChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999986432  12233344555677899999999999999999999999


Q ss_pred             HhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 024531          160 VLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGP  232 (266)
Q Consensus       160 al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~  232 (266)
                      ++.++|+++.+++++|.+|..+|++++|+.+|+++++++|++..++..+..+...+++..++++.+|++||+.
T Consensus       222 al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~  294 (336)
T 1p5q_A          222 ALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER  294 (336)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999864

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.97  E-value=5.8e-29  Score=223.61  Aligned_cols=231  Identities=27%  Similarity=0.468  Sum_probs=196.1

Q ss_pred             ccCCC--CccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeeccccccCCCCCCCCHHHH
Q 024531            2 VLGKE--KKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEER   79 (266)
Q Consensus         2 ~lg~~--~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~   79 (266)
                      ++|.+  ..++.|++.|+..|+.||++.+.++|.++|+..|... ..+|+++.+.|.+.+..+.+...   .+.+.....
T Consensus       189 ~~g~g~~~~v~~~~e~al~~~~~ge~~~l~i~P~~ay~~~g~~~-~~ip~~~~l~y~~~l~~~~~A~~---~~~~~~~~~  264 (457)
T 1kt0_A          189 TVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPK-FGIEPNAELIYEVTLKSFEKAKE---SWEMDTKEK  264 (457)
T ss_dssp             ETTCGGGGTCCHHHHHHHTTCCBTCEEEEEECGGGTTCSSCBGG-GTBCTTCCEEEEEEEEEEECCCC---GGGSCHHHH
T ss_pred             EeCCCccccCChHHHHHHHhCCCCCEEEEEECcccccCCCCCcc-cCCCCCCEEEEEhhhhhcccCcc---hhhcCHHHH
Confidence            35644  2589999999999999999999999999999999732 36899999999999998877665   889999999


Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531           80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  159 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~  159 (266)
                      +..+..++.+|+.+++.|+|.+|+..|.+|+.+.|.....  ..+.......+...+++|+|.||.++|+|++|+.+|++
T Consensus       265 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~--~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~  342 (457)
T 1kt0_A          265 LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGL--SEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDK  342 (457)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSC--CHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccC--ChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            9999999999999999999999999999999999986432  12233345566677999999999999999999999999


Q ss_pred             HhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcc
Q 024531          160 VLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQ  238 (266)
Q Consensus       160 al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~~~~  238 (266)
                      +|.++|+++++++++|.+|..+|+|++|+.+|+++++++|++..++..+..+...+++..++++.+|++||+.....++
T Consensus       343 al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~k~~~~d~  421 (457)
T 1kt0_A          343 ALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFKKFAEQDA  421 (457)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred             HHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999986554443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.90  E-value=1.4e-23  Score=162.01  Aligned_cols=156  Identities=26%  Similarity=0.342  Sum_probs=126.2

Q ss_pred             HHHHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhh-chhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHH
Q 024531           76 VEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQL-FGKYRDMALAVKNPCHLNMAACLLKLKRYEEAI  154 (266)
Q Consensus        76 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~-~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~  154 (266)
                      .++++..+..+++.|+.++..|+|++|+..|.+++.+.+....... ..............+++|+|.||+++|+|++|+
T Consensus         4 ~~e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~   83 (162)
T 3rkv_A            4 EDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAE   83 (162)
T ss_dssp             ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            3456778999999999999999999999999999999543221100 111122334456668999999999999999999


Q ss_pred             HHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 024531          155 GQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK-SIARELRLLAEHEKAVYKKQKEIYKGIFG  231 (266)
Q Consensus       155 ~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~~l~~l~~~~~~~~~~~~~~~~k~~~  231 (266)
                      .+|++++.++|+++++++++|.+|..+|+|++|+.+|++++.++|+++ .+...+..+...+++..++++..|++||+
T Consensus        84 ~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~  161 (162)
T 3rkv_A           84 ETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKADSRVTYSKMFQ  161 (162)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTSSCC-------
T ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999 88999999999999999999999999985

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.89  E-value=2.6e-22  Score=148.97  Aligned_cols=115  Identities=23%  Similarity=0.351  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531           80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  159 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~  159 (266)
                      ++.++.++++|+.+|+.|+|++|+..|+++|+++|.+..                 ++.++|.||.++|++++|+.+|++
T Consensus        10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~-----------------~~~~~~~~~~~~~~~~~A~~~~~~   72 (126)
T 4gco_A           10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAI-----------------LYSNRAACLTKLMEFQRALDDCDT   72 (126)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHhhHHHhhccHHHHHHHHHH
Confidence            567889999999999999999999999999999999766                 699999999999999999999999


Q ss_pred             HhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024531          160 VLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL  211 (266)
Q Consensus       160 al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l  211 (266)
                      +++++|+++.+++++|.++..+|++++|+.+|+++++++|+|++++..|+.|
T Consensus        73 al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           73 CIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999988865

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.86  E-value=1.2e-20  Score=150.18  Aligned_cols=174  Identities=31%  Similarity=0.423  Sum_probs=135.8

Q ss_pred             EeeccccccCCCCCCCCHHHHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhh
Q 024531           59 LIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHL  138 (266)
Q Consensus        59 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~  138 (266)
                      +..+.+..+   .|+++..+....+..+...|..++..|+|++|+..|.+++.+.|........ ........+...++.
T Consensus        17 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~~~~~~~~   92 (198)
T 2fbn_A           17 LYFQGAKKS---IYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ-ILLDKKKNIEISCNL   92 (198)
T ss_dssp             -----CCCS---GGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH-HHHHHHHHHHHHHHH
T ss_pred             hhhccccCc---hhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh-hHHHHHHHHHHHHHH
Confidence            344444444   8999999999999999999999999999999999999999998876532111 122223444556899


Q ss_pred             hHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 024531          139 NMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAV  218 (266)
Q Consensus       139 n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~  218 (266)
                      ++|.++..+|++++|+.+|++++.++|++..+++++|.++..+|++++|+.+|++++.++|++..++..+..+...+++.
T Consensus        93 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  172 (198)
T 2fbn_A           93 NLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEA  172 (198)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccCCCCCC
Q 024531          219 YKKQKEIYKGIFGPRPEP  236 (266)
Q Consensus       219 ~~~~~~~~~k~~~~~~~~  236 (266)
                      .+..+..|+++|+...-.
T Consensus       173 ~~~~~~~~~~~f~~~~~~  190 (198)
T 2fbn_A          173 RKKDKLTFGGMFDKGPLY  190 (198)
T ss_dssp             HC----------------
T ss_pred             HHHHHHHHHHHhcccchh
Confidence            888888999999765443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.85  E-value=4.2e-21  Score=146.62  Aligned_cols=142  Identities=18%  Similarity=0.170  Sum_probs=119.8

Q ss_pred             CCHHHHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHH
Q 024531           74 MTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEA  153 (266)
Q Consensus        74 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A  153 (266)
                      |.+-..+..+..+...|+.+++.|+|++|+..|++||+++|+.+..+...     .......+|+|+|.|+.++|+|++|
T Consensus         2 ~~~~~~~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~-----~~~~~a~a~~n~g~al~~Lgr~~eA   76 (159)
T 2hr2_A            2 MKPLKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFD-----HAGFDAFCHAGLAEALAGLRSFDEA   76 (159)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCC-----HHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CccHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhh-----hccchHHHHHHHHHHHHHCCCHHHH
Confidence            44444567899999999999999999999999999999999843211000     0112233899999999999999999


Q ss_pred             HHHHHhHhcC-------CCCchHHH----HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 024531          154 IGQCSLVLGE-------DENNVKAL----FRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYK  220 (266)
Q Consensus       154 ~~~~~~al~l-------~p~~~~a~----~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~  220 (266)
                      +.+|+++|++       +|++.++|    |++|.++..+|++++|+.+|+++++++|++..+...+..+++..+...+
T Consensus        77 l~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~~~~~  154 (159)
T 2hr2_A           77 LHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRIA  154 (159)
T ss_dssp             HHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence            9999999999       99999999    9999999999999999999999999999999999888888766665543

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.85  E-value=1.7e-21  Score=174.99  Aligned_cols=233  Identities=17%  Similarity=0.144  Sum_probs=159.8

Q ss_pred             ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeeccccccCC------------
Q 024531            2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGK------------   69 (266)
Q Consensus         2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~~~~~~~~------------   69 (266)
                      +||.+ .+|+||+.+|..|+.||++.|+|+|.++||..|.  ++.||++++++|.|++.++...+-..            
T Consensus        80 ~~g~~-~~i~g~~~~l~~m~~Ge~~~~~i~~~~~yg~~g~--~~~i~~~~~l~~~v~l~~~~~~~~~~dg~~~k~i~~~g  156 (457)
T 1kt0_A           80 SLGKG-QVIKAWDIGVATMKRGEICHLLCKPEYAYGSAGS--LPKIPSNATLFFEIELLDFKGEDLFEDGGIIRRTKRKG  156 (457)
T ss_dssp             ETTST-TSCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCB--TTTBCTTCCEEEEEEEEEEECEETTSSSSEEEEEEECC
T ss_pred             EeCCc-chhhHHHHHHhhCCCCCEEEEEEChHHhccccCC--CCCCCCCCcEEEEEeeceeecccccCCcceEEEEEecC
Confidence            58888 7999999999999999999999999999999997  67899999999999999875421100            


Q ss_pred             CCCCCCHH--------------HHHHH--HHHHHHHhHHHHhhccHHHHHHHHHH----HHhhhccchhhhhch------
Q 024531           70 ARSDMTVE--------------ERIGA--ADRRKMDGNALFKEEKLEEAMQQYEM----AIAYMGDDFMFQLFG------  123 (266)
Q Consensus        70 ~~~~~~~~--------------~~~~~--~~~~~~~g~~~~~~g~~~~A~~~y~~----al~~~~~~~~~~~~~------  123 (266)
                      .-+.....              ..+..  .......|....-...++.|+..+.+    +|.+.|.. .+...+      
T Consensus       157 ~~~~~p~~g~~V~v~y~g~~~g~~f~~~~~~f~~g~g~~~~v~~~~e~al~~~~~ge~~~l~i~P~~-ay~~~g~~~~~i  235 (457)
T 1kt0_A          157 EGYSNPNEGATVEIHLEGRCGGRMFDCRDVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRY-GFGEAGKPKFGI  235 (457)
T ss_dssp             BCSCCCCTTCEEEEEEEEEETTEEEEEEEEEEETTCGGGGTCCHHHHHHHTTCCBTCEEEEEECGGG-TTCSSCBGGGTB
T ss_pred             CCCCCCCCCCEEEEEEEEEeCCeEEecCceEEEeCCCccccCChHHHHHHHhCCCCCEEEEEECccc-ccCCCCCcccCC
Confidence            00000000              00000  00000000000111245555555554    44444321 000000      


Q ss_pred             -----------------h-----HHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCc--------------
Q 024531          124 -----------------K-----YRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN--------------  167 (266)
Q Consensus       124 -----------------~-----~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~--------------  167 (266)
                                       .     .......-...++.++|.++++.|+|.+|+..|++|+.++|.+              
T Consensus       236 p~~~~l~y~~~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~  315 (457)
T 1kt0_A          236 EPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESF  315 (457)
T ss_dssp             CTTCCEEEEEEEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHH
T ss_pred             CCCCEEEEEhhhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHH
Confidence                             0     0001112234478999999999999999999999999999998              


Q ss_pred             -hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCccc
Q 024531          168 -VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQK  239 (266)
Q Consensus       168 -~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~  239 (266)
                       ..+++++|.||..+|+|++|+.+|++++.++|++..++..++.+...+++..++. ..|.+++...+.....
T Consensus       316 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~-~~~~~al~l~P~~~~a  387 (457)
T 1kt0_A          316 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAK-GDFEKVLEVNPQNKAA  387 (457)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHTTC----CH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHH-HHHHHHHHhCCCCHHH
Confidence             6999999999999999999999999999999999999999999988888776654 4588988877665543

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.81  E-value=4.7e-19  Score=154.91  Aligned_cols=156  Identities=31%  Similarity=0.433  Sum_probs=131.4

Q ss_pred             CHHHHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHH
Q 024531           75 TVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAI  154 (266)
Q Consensus        75 ~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~  154 (266)
                      +.+.....+..++..|+.++..|+|++|+..|.+++.+.+..... ...+...........++.|+|.||.++|+|++|+
T Consensus       215 ~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~-~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~  293 (370)
T 1ihg_A          215 DVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAA-AEDADGAKLQPVALSCVLNIGACKLKMSDWQGAV  293 (370)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH-SCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccc-cChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHH
Confidence            578888999999999999999999999999999999976553210 0000011123335568999999999999999999


Q ss_pred             HHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 024531          155 GQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFG  231 (266)
Q Consensus       155 ~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~  231 (266)
                      .+|+++++++|+++++++++|.+|..+|++++|+.+|+++++++|++..++..+..+...+++..++++..|++||+
T Consensus       294 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~~~~kmf~  370 (370)
T 1ihg_A          294 DSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAYAKMFA  370 (370)
T ss_dssp             HHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999884

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.81  E-value=5.2e-19  Score=131.13  Aligned_cols=115  Identities=23%  Similarity=0.259  Sum_probs=102.9

Q ss_pred             HHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHH
Q 024531           79 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS  158 (266)
Q Consensus        79 ~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~  158 (266)
                      ..+.+..++++|+.+++.|+|++|+..|++||+++|.+..                 ++.|+|.||..+|+|++|+.+|+
T Consensus         4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~-----------------~~~nlg~~~~~~~~~~~A~~~~~   66 (127)
T 4gcn_A            4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNIT-----------------FYNNKAAVYFEEKKFAECVQFCE   66 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----------------HHHhHHHHHHHhhhHHHHHHHHH
Confidence            3567888999999999999999999999999999999765                 69999999999999999999999


Q ss_pred             hHhcCCCCch-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024531          159 LVLGEDENNV-------KALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL  211 (266)
Q Consensus       159 ~al~l~p~~~-------~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l  211 (266)
                      ++++++|++.       ++++++|.++..+|++++|+.+|++++..+|+ ++....|..+
T Consensus        67 ~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~l  125 (127)
T 4gcn_A           67 KAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKEL  125 (127)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHHH
T ss_pred             HHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHHh
Confidence            9999988763       68999999999999999999999999999986 6665555543

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.80  E-value=9.6e-19  Score=128.74  Aligned_cols=117  Identities=23%  Similarity=0.310  Sum_probs=109.9

Q ss_pred             HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhH
Q 024531           81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  160 (266)
Q Consensus        81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~a  160 (266)
                      ..+..+...|..++..|+|++|+..|.+++...|.+..                 ++.++|.++..+|++++|+.+|+++
T Consensus         2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-----------------~~~~~a~~~~~~~~~~~A~~~~~~a   64 (126)
T 3upv_A            2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDAR-----------------GYSNRAAALAKLMSFPEAIADCNKA   64 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH-----------------HHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            35778899999999999999999999999999998765                 6999999999999999999999999


Q ss_pred             hcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHH
Q 024531          161 LGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFA------PEDKSIARELRLLAEH  214 (266)
Q Consensus       161 l~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~------p~~~~~~~~l~~l~~~  214 (266)
                      +.++|+++.+++++|.++..+|++++|+.+|++++.++      |+++.+...+..+...
T Consensus        65 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~  124 (126)
T 3upv_A           65 IEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ  124 (126)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred             HHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999      9999999888877543

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.78  E-value=4.3e-18  Score=130.14  Aligned_cols=106  Identities=15%  Similarity=0.186  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531           80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  159 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~  159 (266)
                      +..+..++..|..+++.|+|++|+..|.+++.++|.+..                 ++.++|.++..+|++++|+..|++
T Consensus        33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~-----------------~~~~lg~~~~~~g~~~~Ai~~~~~   95 (151)
T 3gyz_A           33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVD-----------------YIMGLAAIYQIKEQFQQAADLYAV   95 (151)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHHccHHHHHHHHHH
Confidence            556788999999999999999999999999999999776                 599999999999999999999999


Q ss_pred             HhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 024531          160 VLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK  202 (266)
Q Consensus       160 al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~  202 (266)
                      ++.++|+++.+++++|.||..+|++++|+.+|++++++.|+++
T Consensus        96 al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           96 AFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            9999999999999999999999999999999999999999865

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.77  E-value=9.9e-18  Score=129.13  Aligned_cols=120  Identities=23%  Similarity=0.227  Sum_probs=108.1

Q ss_pred             HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhH
Q 024531           81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  160 (266)
Q Consensus        81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~a  160 (266)
                      ..+..+...|..++..|+|++|+..|.+++.+.|.+..                 ++.++|.+|..+|++++|+.+|+++
T Consensus         9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~-----------------~~~~l~~~~~~~g~~~~A~~~~~~a   71 (164)
T 3sz7_A            9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPI-----------------YLSNRAAAYSASGQHEKAAEDAELA   71 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHH-----------------HHHHHHHHHHHccCHHHHHHHHHHH
Confidence            45788999999999999999999999999999998665                 6999999999999999999999999


Q ss_pred             hcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH--HHHHHHHHHHHHHH
Q 024531          161 LGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKS--IARELRLLAEHEKA  217 (266)
Q Consensus       161 l~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~--~~~~l~~l~~~~~~  217 (266)
                      +.++|+++.+++++|.++..+|++++|+.+|+++++++|++..  ....+..+...+++
T Consensus        72 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~  130 (164)
T 3sz7_A           72 TVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEE  130 (164)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999887  45555544444433

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.76  E-value=7.6e-19  Score=134.00  Aligned_cols=131  Identities=15%  Similarity=0.062  Sum_probs=113.1

Q ss_pred             HhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCch
Q 024531           89 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNV  168 (266)
Q Consensus        89 ~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~  168 (266)
                      +|..+..+|++++|+..|++++...|+...                 .++++|.+|++.|+|++|+.+++++++++|+++
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~-----------------~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~   65 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQKSI-----------------KGFYFAKLYYEAKEYDLAKKYICTYINVQERDP   65 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHHHT-----------------THHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcccHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            578888999999999999999999887554                 588999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 024531          169 KALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEP  236 (266)
Q Consensus       169 ~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~~  236 (266)
                      .+|+.+|.+|..+|++++|+.+|+++++++|+++.+...++.+....++..++.+..+++.+...|..
T Consensus        66 ~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~  133 (150)
T 4ga2_A           66 KAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGS  133 (150)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCC
Confidence            99999999999999999999999999999999999999999988777776666666567777665554

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.76  E-value=1.3e-17  Score=125.62  Aligned_cols=123  Identities=20%  Similarity=0.186  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531           80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  159 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~  159 (266)
                      +.....+...|..++..|+|++|+..|.+++...|.+..                 ++.++|.++..+|++++|+..|++
T Consensus        15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~-----------------~~~~lg~~~~~~g~~~~A~~~~~~   77 (142)
T 2xcb_A           15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDAR-----------------YFLGLGACRQSLGLYEQALQSYSY   77 (142)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHH-----------------HHHHHHHHHHHHhhHHHHHHHHHH
Confidence            455678889999999999999999999999999998766                 589999999999999999999999


Q ss_pred             HhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 024531          160 VLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVY  219 (266)
Q Consensus       160 al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~  219 (266)
                      ++.++|+++.+++.+|.++..+|++++|+..|++++.++|+++........+...++...
T Consensus        78 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~  137 (142)
T 2xcb_A           78 GALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVT  137 (142)
T ss_dssp             HHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998877766666655555443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.76  E-value=3.2e-18  Score=130.48  Aligned_cols=117  Identities=9%  Similarity=0.020  Sum_probs=106.5

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531           80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  159 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~  159 (266)
                      ++....+...|..++..|+|++|+..|.++++++|++..                 ++.++|.+|..+|++++|+.+|++
T Consensus        28 p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~-----------------a~~~lg~~~~~~~~~~~A~~~~~~   90 (150)
T 4ga2_A           28 RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPK-----------------AHRFLGLLYELEENTDKAVECYRR   90 (150)
T ss_dssp             HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHcCchHHHHHHHHH
Confidence            345566778999999999999999999999999999766                 699999999999999999999999


Q ss_pred             HhcCCCCchHHHHHHHHHHHHcCCHHHHHHH-HHHHHhhCCCCHHHHHHHHHHHH
Q 024531          160 VLGEDENNVKALFRRGKARAELGQTDAARED-FLKAGKFAPEDKSIARELRLLAE  213 (266)
Q Consensus       160 al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~-~~~al~l~p~~~~~~~~l~~l~~  213 (266)
                      +++++|+++.+++++|.++..+|++++|... ++++++++|+|+.+......+..
T Consensus        91 al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~  145 (150)
T 4ga2_A           91 SVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLD  145 (150)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence            9999999999999999999999999887776 59999999999999887776643

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.75  E-value=1.8e-17  Score=126.17  Aligned_cols=120  Identities=13%  Similarity=0.104  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531           80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  159 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~  159 (266)
                      +.....+...|..++..|+|++|+..|.+++...|.+..                 ++.++|.++..+|++++|+..|++
T Consensus        18 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~-----------------~~~~lg~~~~~~g~~~~A~~~~~~   80 (148)
T 2vgx_A           18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSR-----------------FFLGLGACRQAMGQYDLAIHSYSY   80 (148)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHH-----------------HHHHHHHHHHHHhhHHHHHHHHHH
Confidence            456778889999999999999999999999999999766                 589999999999999999999999


Q ss_pred             HhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 024531          160 VLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEK  216 (266)
Q Consensus       160 al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~  216 (266)
                      ++.++|+++.+++++|.++..+|++++|+.+|+++++++|+++........+...++
T Consensus        81 al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~  137 (148)
T 2vgx_A           81 GAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLE  137 (148)
T ss_dssp             HHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred             HHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998776555554444333

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.74  E-value=2.2e-17  Score=155.49  Aligned_cols=139  Identities=17%  Similarity=0.180  Sum_probs=126.5

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531           80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  159 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~  159 (266)
                      +..++.+..+|+.+...|++++|+..|++||+++|+...                 +++|+|.+|.++|++++|+.+|++
T Consensus         6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~-----------------a~~nLg~~l~~~g~~~eA~~~~~~   68 (723)
T 4gyw_A            6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA-----------------AHSNLASVLQQQGKLQEALMHYKE   68 (723)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHH
Confidence            456889999999999999999999999999999999665                 699999999999999999999999


Q ss_pred             HhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 024531          160 VLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEP  236 (266)
Q Consensus       160 al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~~  236 (266)
                      |++++|++..+++++|.++..+|++++|+++|+++++++|++..++..++.+...+++.+++... |++.+...++.
T Consensus        69 Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~-~~~Al~l~P~~  144 (723)
T 4gyw_A           69 AIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIAS-YRTALKLKPDF  144 (723)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHHCSCC
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCCC
Confidence            99999999999999999999999999999999999999999999999999998888877666554 78887765543

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.73  E-value=4.6e-17  Score=120.90  Aligned_cols=121  Identities=30%  Similarity=0.345  Sum_probs=110.9

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531           82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  161 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al  161 (266)
                      .+..+...|..++..|+|++|+..|.+++...|.+..                 ++.++|.++..+|++++|+.++++++
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~-----------------~~~~l~~~~~~~~~~~~A~~~~~~al   70 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAV-----------------YYTNRALCYLKMQQPEQALADCRRAL   70 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHH-----------------HHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            3678899999999999999999999999999998655                 69999999999999999999999999


Q ss_pred             cCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHHHHHHH
Q 024531          162 GEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE-----DKSIARELRLLAEHEKAVY  219 (266)
Q Consensus       162 ~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~-----~~~~~~~l~~l~~~~~~~~  219 (266)
                      .++|+++.+++.+|.++..+|++++|+..|++++.++|+     +..+...+..+........
T Consensus        71 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~  133 (137)
T 3q49_B           71 ELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSI  133 (137)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHH
T ss_pred             HhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998     7888888887765554443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.73  E-value=2e-16  Score=126.91  Aligned_cols=147  Identities=17%  Similarity=0.096  Sum_probs=113.2

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  162 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~  162 (266)
                      ++.+...|..++..|+|++|+..|.+++..+|++...-..... .....+...+.+++|.+|...|++++|+..|+++++
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   82 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNV-DKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ   82 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHS-CTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhh-cchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            5677899999999999999999999999999986542000000 000001112233499999999999999999999999


Q ss_pred             CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHhccc
Q 024531          163 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAV-YKKQKEIYKGIF  230 (266)
Q Consensus       163 l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~-~~~~~~~~~k~~  230 (266)
                      ++|+++.+++.+|.++..+|++++|+.+|+++++++|+++.++..++.+.-...+. .+.....|+++.
T Consensus        83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~  151 (208)
T 3urz_A           83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS  151 (208)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999886544432 223334455543

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.71  E-value=8e-17  Score=130.07  Aligned_cols=131  Identities=15%  Similarity=0.084  Sum_probs=82.1

Q ss_pred             HHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHh-----------hCHHHH
Q 024531           85 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKL-----------KRYEEA  153 (266)
Q Consensus        85 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~-----------~~~~~A  153 (266)
                      .+...|..+...|++++|+..|.+++.+.|++..                 ++.++|.++...           |++++|
T Consensus        41 a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~-----------------a~~~lg~~~~~~~~~~~~~~~~~g~~~~A  103 (217)
T 2pl2_A           41 ALYWLARTQLKLGLVNPALENGKTLVARTPRYLG-----------------GYMVLSEAYVALYRQAEDRERGKGYLEQA  103 (217)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-----------------HHHHHHHHHHHhhhhhhhhcccccCHHHH
Confidence            3344444444444444444444444444444332                 566777777777           777777


Q ss_pred             HHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 024531          154 IGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPR  233 (266)
Q Consensus       154 ~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~  233 (266)
                      +..++++++++|+++.+++.+|.++..+|++++|+..|+++++++ +++.++..++.+....++..++.. .|++++...
T Consensus       104 ~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~  181 (217)
T 2pl2_A          104 LSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALA-QYAKALEQA  181 (217)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHS
T ss_pred             HHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhC
Confidence            777777777777777777777777777777777777777777777 777777777777666665544433 356666544


Q ss_pred             C
Q 024531          234 P  234 (266)
Q Consensus       234 ~  234 (266)
                      |
T Consensus       182 P  182 (217)
T 2pl2_A          182 P  182 (217)
T ss_dssp             T
T ss_pred             C
Confidence            3

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.69  E-value=1e-15  Score=109.63  Aligned_cols=114  Identities=18%  Similarity=0.199  Sum_probs=107.2

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531           82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  161 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al  161 (266)
                      .+..+...|..++..|++++|+..|.+++...|.+..                 ++.++|.++...|++++|+..+++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----------------~~~~~a~~~~~~~~~~~A~~~~~~~~   65 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHV-----------------LYSNRSAAYAKKGDYQKAYEDGCKTV   65 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHH-----------------HHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            4678889999999999999999999999999998655                 68999999999999999999999999


Q ss_pred             cCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024531          162 GEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLA  212 (266)
Q Consensus       162 ~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  212 (266)
                      ..+|+++.+++.+|.++..+|++++|...|++++.++|+++.+...+..+.
T Consensus        66 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           66 DLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999988887664

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.69  E-value=9.9e-16  Score=123.82  Aligned_cols=134  Identities=16%  Similarity=0.211  Sum_probs=117.4

Q ss_pred             HHHHHHhHHHHhhccHHHHHHHHHHHHhhhc-cchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531           84 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMG-DDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  162 (266)
Q Consensus        84 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~-~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~  162 (266)
                      ..+...|..++..|+|++|+..|.+++...| .+..                 +++++|.++..+|++++|+.++++++.
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~A~~~~~~al~   70 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSV-----------------TAYNCGVCADNIKKYKEAADYFDIAIK   70 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcH-----------------HHHHHHHHHHHhhcHHHHHHHHHHHHH
Confidence            6788999999999999999999999999998 5443                 588899999999999999999999999


Q ss_pred             CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 024531          163 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK-------SIARELRLLAEHEKAVYKKQKEIYKGIFGPRPE  235 (266)
Q Consensus       163 l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~-------~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~  235 (266)
                      ++|++..+++.+|.++..+|++++|+..|++++.++|+++       .+...++.+....++..++ ...|.+++...+.
T Consensus        71 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A-~~~~~~al~~~p~  149 (228)
T 4i17_A           71 KNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKA-EENYKHATDVTSK  149 (228)
T ss_dssp             TTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHH-HHHHHHHTTSSCH
T ss_pred             hCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHH-HHHHHHHHhcCCC
Confidence            9999999999999999999999999999999999999999       5567777776666665544 4457888876443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.68  E-value=4.1e-15  Score=113.43  Aligned_cols=118  Identities=24%  Similarity=0.342  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHH
Q 024531           77 EERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQ  156 (266)
Q Consensus        77 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~  156 (266)
                      ......+..+...|..++..|+|+.|+..|.+++...|.+..                 ++.++|.++...|++++|+..
T Consensus         7 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~-----------------~~~~~a~~~~~~~~~~~A~~~   69 (166)
T 1a17_A            7 DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAI-----------------YYGNRSLAYLRTECYGYALGD   69 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH-----------------HHHHHHHHHHHTTCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChH-----------------HHHHHHHHHHHcCCHHHHHHH
Confidence            455678899999999999999999999999999999998655                 699999999999999999999


Q ss_pred             HHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024531          157 CSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL  211 (266)
Q Consensus       157 ~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l  211 (266)
                      +.+++.++|.++.+++.+|.++..+|++++|+..|++++.++|++..+...+..+
T Consensus        70 ~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~  124 (166)
T 1a17_A           70 ATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC  124 (166)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999888666665

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.68  E-value=1.9e-15  Score=110.16  Aligned_cols=123  Identities=28%  Similarity=0.329  Sum_probs=112.3

Q ss_pred             HHHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHH
Q 024531           77 EERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQ  156 (266)
Q Consensus        77 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~  156 (266)
                      ......+..+...|..++..|+++.|+..|.+++...|....                 ++.++|.++...|++++|+..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----------------~~~~~a~~~~~~~~~~~A~~~   68 (131)
T 2vyi_A            6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAV-----------------YFCNRAAAYSKLGNYAGAVQD   68 (131)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCHHHHHHH
T ss_pred             hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHH-----------------HHHHHHHHHHHhhchHHHHHH
Confidence            344567888999999999999999999999999999988654                 689999999999999999999


Q ss_pred             HHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 024531          157 CSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEK  216 (266)
Q Consensus       157 ~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~  216 (266)
                      +.+++..+|+++.+++.+|.++..+|++++|+..|++++.++|++..+...+..+...++
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  128 (131)
T 2vyi_A           69 CERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR  128 (131)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999988887765443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.68  E-value=9.4e-16  Score=123.73  Aligned_cols=88  Identities=16%  Similarity=0.120  Sum_probs=76.6

Q ss_pred             hhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024531          134 NPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAE  213 (266)
Q Consensus       134 ~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  213 (266)
                      ..++.++|.++..+|++++|+..|+++++++ +++.+++.+|.++..+|++++|+..|+++++++|+++.+...+..+..
T Consensus       118 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~  196 (217)
T 2pl2_A          118 APLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALL  196 (217)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            5578999999999999999999999999999 999999999999999999999999999999999999999999998877


Q ss_pred             HHHHHHHHH
Q 024531          214 HEKAVYKKQ  222 (266)
Q Consensus       214 ~~~~~~~~~  222 (266)
                      ..++..++.
T Consensus       197 ~~g~~~~A~  205 (217)
T 2pl2_A          197 LKGKAEEAA  205 (217)
T ss_dssp             C--------
T ss_pred             HccCHHHHH
Confidence            776665443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.67  E-value=3.3e-16  Score=114.96  Aligned_cols=102  Identities=12%  Similarity=0.002  Sum_probs=91.0

Q ss_pred             HHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCC
Q 024531           85 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED  164 (266)
Q Consensus        85 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~  164 (266)
                      .+...|..++..|++++|+..|.+++...|++..                 +++++|.++...|++++|+..++++++++
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~-----------------a~~~lg~~~~~~g~~~~A~~~~~~al~l~   81 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREE-----------------AWRSLGLTQAENEKDGLAIIALNHARMLD   81 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            3578899999999999999999999999999766                 69999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 024531          165 ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKS  203 (266)
Q Consensus       165 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~  203 (266)
                      |+++.+++.+|.++..+|++++|+..|+++++++|++..
T Consensus        82 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           82 PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence            999999999999999999999999999999999998754

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.67  E-value=1.3e-15  Score=118.87  Aligned_cols=151  Identities=13%  Similarity=0.103  Sum_probs=111.5

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhh--------hchhHHHHHH---------HhhhhhhhhHHHHH
Q 024531           82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQ--------LFGKYRDMAL---------AVKNPCHLNMAACL  144 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~--------~~~~~~~~~~---------~l~~~~~~n~a~~~  144 (266)
                      .+..+..+|..++..|+|++|+..|+++++++|++...-        ..+...+...         .-...++.++|.++
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   83 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN   83 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence            356788999999999999999999999999999865431        0111111110         01133566777777


Q ss_pred             HHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 024531          145 LKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKE  224 (266)
Q Consensus       145 ~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~  224 (266)
                      ...++++.|+..+.+++.++|++..+++.+|.++..+|++++|+..|+++++++|+++.+...++.+...+++..++.. 
T Consensus        84 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~-  162 (184)
T 3vtx_A           84 FMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVK-  162 (184)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-
T ss_pred             HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHH-
Confidence            7788888888888888888888888888888888888888888888888888888888888888888777766655444 


Q ss_pred             HHhcccCCC
Q 024531          225 IYKGIFGPR  233 (266)
Q Consensus       225 ~~~k~~~~~  233 (266)
                      .|++.+...
T Consensus       163 ~~~~al~~~  171 (184)
T 3vtx_A          163 YFKKALEKE  171 (184)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHhCC
Confidence            467766543

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.66  E-value=2.7e-15  Score=110.01  Aligned_cols=116  Identities=10%  Similarity=0.093  Sum_probs=104.7

Q ss_pred             HHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCC
Q 024531           85 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED  164 (266)
Q Consensus        85 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~  164 (266)
                      .+...|..++..|+|++|+..|.+++...|++..              ...+++++|.++...|++++|+..+++++..+
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~--------------~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~   69 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVY--------------TPNALYWLGESYYATRNFQLAEAQFRDLVSRY   69 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTT--------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcc--------------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence            4678899999999999999999999999998652              12368999999999999999999999999999


Q ss_pred             CCc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024531          165 ENN---VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEH  214 (266)
Q Consensus       165 p~~---~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  214 (266)
                      |++   +.+++.+|.++..+|++++|+..|++++...|+++.+......+...
T Consensus        70 p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l  122 (129)
T 2xev_A           70 PTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI  122 (129)
T ss_dssp             TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred             CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence            999   88999999999999999999999999999999999888777766543

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.66  E-value=6.6e-16  Score=145.52  Aligned_cols=125  Identities=16%  Similarity=0.055  Sum_probs=115.2

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531           80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  159 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~  159 (266)
                      +..+..+..+|..+...|++++|+..|+++++++|+...                 +++|+|.++..+|++++|+..|++
T Consensus        40 P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~-----------------a~~nLg~~l~~~g~~~~A~~~~~k  102 (723)
T 4gyw_A           40 PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD-----------------AYSNMGNTLKEMQDVQGALQCYTR  102 (723)
T ss_dssp             SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHH
Confidence            344677889999999999999999999999999999765                 699999999999999999999999


Q ss_pred             HhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 024531          160 VLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKK  221 (266)
Q Consensus       160 al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~  221 (266)
                      +++++|++..+++++|.+|..+|++++|+.+|+++++++|++..++..|+.+...+.+..++
T Consensus       103 Al~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A  164 (723)
T 4gyw_A          103 AIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY  164 (723)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence            99999999999999999999999999999999999999999999999999987766554433

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.66  E-value=4.3e-16  Score=136.61  Aligned_cols=122  Identities=13%  Similarity=0.049  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhC-HHHHHHHHH
Q 024531           80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR-YEEAIGQCS  158 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~-~~~A~~~~~  158 (266)
                      +.....+...|..+...|++++|+..|.++|.++|+...                 +++++|.++..+|+ +++|+.+|+
T Consensus        94 p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~-----------------a~~~~g~~l~~~g~d~~eAl~~~~  156 (382)
T 2h6f_A           94 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYT-----------------VWHFRRVLLKSLQKDLHEEMNYIT  156 (382)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHH-----------------HHHHHHHHHHHcccCHHHHHHHHH
Confidence            445666777888888888888888888888888887544                 34445555555553 555555555


Q ss_pred             hHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 024531          159 LVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAV  218 (266)
Q Consensus       159 ~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~  218 (266)
                      +++.++|++..+|+++|.++..+|++++|+.+|++++.++|+|..++..++.+...+++.
T Consensus       157 ~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~  216 (382)
T 2h6f_A          157 AIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLW  216 (382)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCCh
Confidence            555555555555555555555555555555555555555555444444444444444333

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.66  E-value=1.4e-15  Score=111.60  Aligned_cols=116  Identities=23%  Similarity=0.233  Sum_probs=108.3

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531           82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  161 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al  161 (266)
                      ....+...|..++..|+|++|+..|.+++...|.+..                 ++.++|.++...|++++|+..+++++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~-----------------~~~~la~~~~~~~~~~~A~~~~~~a~   77 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAK-----------------LYSNRAACYTKLLEFQLALKDCEECI   77 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHH-----------------HHHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH-----------------HHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            4678889999999999999999999999999988654                 69999999999999999999999999


Q ss_pred             cCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024531          162 GEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEH  214 (266)
Q Consensus       162 ~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  214 (266)
                      .++|.+..+++.+|.++..+|++++|+..|++++.++|++..+...+..+...
T Consensus        78 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  130 (133)
T 2lni_A           78 QLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA  130 (133)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred             HhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999988888877543

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.66  E-value=2.6e-15  Score=112.33  Aligned_cols=116  Identities=31%  Similarity=0.466  Sum_probs=106.5

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  162 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~  162 (266)
                      +..+...|..++..|+|++|+..|.+++...|+...              ...++.++|.++...|++++|+..+++++.
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~--------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~   93 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQD--------------QAVLHRNRAACHLKLEDYDKAETEASKAIE   93 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHH--------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchH--------------HHHHHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence            677889999999999999999999999999987421              233699999999999999999999999999


Q ss_pred             CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024531          163 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLA  212 (266)
Q Consensus       163 l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  212 (266)
                      ++|+++.+++.+|.++..+|++++|+..|++++.++|++..+...+..+.
T Consensus        94 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (148)
T 2dba_A           94 KDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS  143 (148)
T ss_dssp             HTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             hCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999988777663

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.64  E-value=4.1e-15  Score=108.46  Aligned_cols=119  Identities=18%  Similarity=0.180  Sum_probs=107.8

Q ss_pred             HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhH
Q 024531           81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  160 (266)
Q Consensus        81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~a  160 (266)
                      +.+..+...|..++..|+++.|+..|.+++...|....                 ++.++|.++...|++++|+.++.++
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----------------~~~~la~~~~~~~~~~~A~~~~~~~   64 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMT-----------------YITNQAAVYFEKGDYNKCRELCEKA   64 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH-----------------HHHHHHHHHHHhccHHHHHHHHHHH
Confidence            35677889999999999999999999999999988654                 6899999999999999999999999


Q ss_pred             hcCCCCc-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 024531          161 LGEDENN-------VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKA  217 (266)
Q Consensus       161 l~l~p~~-------~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~  217 (266)
                      +.++|.+       ..+++.+|.++..+|++++|+..|++++.+.| ++.+...+..+...+++
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~  127 (131)
T 1elr_A           65 IEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE  127 (131)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred             HhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence            9998877       89999999999999999999999999999999 68888888877655544

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.63  E-value=1.9e-15  Score=132.45  Aligned_cols=138  Identities=12%  Similarity=0.036  Sum_probs=118.5

Q ss_pred             HHHHHHHHHhHHHHhhcc-HHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531           81 GAADRRKMDGNALFKEEK-LEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  159 (266)
Q Consensus        81 ~~~~~~~~~g~~~~~~g~-~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~  159 (266)
                      .....+..+|..+...|+ +++|+..|.++|.++|++..                 +++++|.++..+|++++|+.+|++
T Consensus       129 ~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~-----------------a~~~~g~~~~~~g~~~eAl~~~~k  191 (382)
T 2h6f_A          129 ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ-----------------VWHHRRVLVEWLRDPSQELEFIAD  191 (382)
T ss_dssp             TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHHTCCTTHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHH-----------------HHHHHHHHHHHccCHHHHHHHHHH
Confidence            446677889999999997 99999999999999999766                 699999999999999999999999


Q ss_pred             HhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH-HHH----HHHHHhcccCCCC
Q 024531          160 VLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAV-YKK----QKEIYKGIFGPRP  234 (266)
Q Consensus       160 al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~-~~~----~~~~~~k~~~~~~  234 (266)
                      +|.++|++..+|+++|.++..+|++++|+.+|+++++++|++..++..++.+...+... .++    +-..|.+.+...+
T Consensus       192 al~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P  271 (382)
T 2h6f_A          192 ILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP  271 (382)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHST
T ss_pred             HHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCC
Confidence            99999999999999999999999999999999999999999999999999887662222 222    2355777765544


Q ss_pred             C
Q 024531          235 E  235 (266)
Q Consensus       235 ~  235 (266)
                      .
T Consensus       272 ~  272 (382)
T 2h6f_A          272 H  272 (382)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.63  E-value=1.2e-15  Score=116.24  Aligned_cols=103  Identities=21%  Similarity=0.187  Sum_probs=93.6

Q ss_pred             hhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCH----------HHHHHHHHhHhcCC
Q 024531           95 KEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRY----------EEAIGQCSLVLGED  164 (266)
Q Consensus        95 ~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~----------~~A~~~~~~al~l~  164 (266)
                      +.+.|++|+..|.++++++|.+..                 +++|+|.++..++++          ++|+..|++||+++
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~ae-----------------a~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld   76 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDAD-----------------NLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID   76 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCHH-----------------HHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC
Confidence            447899999999999999999776                 699999999999875          59999999999999


Q ss_pred             CCchHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024531          165 ENNVKALFRRGKARAELG-----------QTDAAREDFLKAGKFAPEDKSIARELRLLAEH  214 (266)
Q Consensus       165 p~~~~a~~~~g~~~~~~g-----------~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  214 (266)
                      |++..+|+++|.+|..+|           ++++|+.+|++|++++|++...++.+..+.+.
T Consensus        77 P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ka  137 (158)
T 1zu2_A           77 PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKA  137 (158)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTH
T ss_pred             cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhC
Confidence            999999999999999985           89999999999999999999888887766443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.62  E-value=3e-16  Score=119.84  Aligned_cols=118  Identities=14%  Similarity=-0.048  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHH
Q 024531          100 EEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARA  179 (266)
Q Consensus       100 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~  179 (266)
                      -.+-..|.+++.++|++..                 +++++|.++...|++++|+..|++++.++|+++.+|+.+|.++.
T Consensus        19 ~~~~~~l~~al~l~p~~~~-----------------~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~   81 (151)
T 3gyz_A           19 INSGATLKDINAIPDDMMD-----------------DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQ   81 (151)
T ss_dssp             HHTSCCTGGGCCSCHHHHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHCCCCHHHHhCCCHHHHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            3344557778888888655                 69999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 024531          180 ELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPE  235 (266)
Q Consensus       180 ~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~  235 (266)
                      .+|+|++|+.+|++++.++|+++.++..++.+...+++..++... |++.+...++
T Consensus        82 ~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~-~~~al~l~~~  136 (151)
T 3gyz_A           82 IKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKEC-FELVIQHSND  136 (151)
T ss_dssp             HTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHH-HHHHHHHCCC
T ss_pred             HHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCC
Confidence            999999999999999999999999999999999888888766655 7887766554

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.62  E-value=1.1e-14  Score=113.51  Aligned_cols=123  Identities=11%  Similarity=0.035  Sum_probs=99.2

Q ss_pred             HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhh--------chhHHHH---H------HHhhhhhhhhHHHH
Q 024531           81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQL--------FGKYRDM---A------LAVKNPCHLNMAAC  143 (266)
Q Consensus        81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~--------~~~~~~~---~------~~l~~~~~~n~a~~  143 (266)
                      ..+..+..+|..++..|++++|+..+.+++...|.......        .+.....   .      ..-...++..+|.+
T Consensus        37 ~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~  116 (184)
T 3vtx_A           37 NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLV  116 (184)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence            34567788888999999999999999999888887543311        1111111   0      11124478899999


Q ss_pred             HHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 024531          144 LLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKS  203 (266)
Q Consensus       144 ~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~  203 (266)
                      +..+|++++|+..|+++++++|.++.+++++|.+|..+|++++|+.+|+++++++|+++.
T Consensus       117 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~  176 (184)
T 3vtx_A          117 YDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAK  176 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred             HHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHH
Confidence            999999999999999999999999999999999999999999999999999999998654

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.61  E-value=1.1e-14  Score=117.55  Aligned_cols=118  Identities=16%  Similarity=0.121  Sum_probs=108.8

Q ss_pred             HHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcC
Q 024531           84 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE  163 (266)
Q Consensus        84 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l  163 (266)
                      ..+...|..++..|+|++|+..|.+++...|....                 ++.++|.+|..+|++++|+..+++++.+
T Consensus        43 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-----------------~~~~l~~~~~~~~~~~~A~~~~~~al~~  105 (228)
T 4i17_A           43 VTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLAN-----------------AYIGKSAAYRDMKNNQEYIATLTEGIKA  105 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHH-----------------HHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            45667999999999999999999999999998655                 6999999999999999999999999999


Q ss_pred             CCCch-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHHH
Q 024531          164 DENNV-------KALFRRGKARAELGQTDAAREDFLKAGKFAPE--DKSIARELRLLAEHEKAV  218 (266)
Q Consensus       164 ~p~~~-------~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~~l~~l~~~~~~~  218 (266)
                      +|+++       .+++.+|.++..+|++++|+..|+++++++|+  +..+...++.+...++..
T Consensus       106 ~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~  169 (228)
T 4i17_A          106 VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGAD  169 (228)
T ss_dssp             STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHH
Confidence            99998       77999999999999999999999999999999  999999999887665554

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.60  E-value=1.4e-14  Score=121.61  Aligned_cols=102  Identities=32%  Similarity=0.370  Sum_probs=97.6

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  162 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~  162 (266)
                      +..+..+|+.++..|+|++|+..|.+++...|.+..                 +++++|.+|..+|++++|+.++++++.
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~-----------------~~~~la~~~~~~~~~~~A~~~~~~al~   66 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAV-----------------YYTNRALCYLKMQQPEQALADCRRALE   66 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHH-----------------HHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            567889999999999999999999999999998665                 699999999999999999999999999


Q ss_pred             CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 024531          163 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED  201 (266)
Q Consensus       163 l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~  201 (266)
                      ++|++..+++++|.++..+|++++|+..|++++.++|++
T Consensus        67 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           67 LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            999999999999999999999999999999999999976

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.60  E-value=4.3e-14  Score=101.94  Aligned_cols=114  Identities=26%  Similarity=0.336  Sum_probs=106.2

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  162 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~  162 (266)
                      +..+...|..++..|++++|+..|.+++...|....                 ++.++|.++...|++++|+..+++++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----------------~~~~la~~~~~~~~~~~A~~~~~~~~~   71 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE-----------------AWYNLGNAYYKQGDYDEAIEYYQKALE   71 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHH-----------------HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            567788999999999999999999999999887554                 588999999999999999999999999


Q ss_pred             CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024531          163 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAE  213 (266)
Q Consensus       163 l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  213 (266)
                      .+|.++.+++.+|.++..+|++++|+..|++++.++|+++.+...+..+..
T Consensus        72 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  122 (125)
T 1na0_A           72 LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ  122 (125)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999988887653

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.60  E-value=2.3e-14  Score=114.80  Aligned_cols=128  Identities=13%  Similarity=0.053  Sum_probs=93.5

Q ss_pred             HhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCch
Q 024531           89 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNV  168 (266)
Q Consensus        89 ~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~  168 (266)
                      +|..++..|++++|+..|.++++++|++..                 ++.++|.++...|++++|+.+|+++++++|+++
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-----------------~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~  122 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQKAPNNVD-----------------CLEACAEMQVCRGQEKDALRMYEKILQLEADNL  122 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence            999999999999999999999999999766                 699999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 024531          169 KALFRRGKARAELGQ--TDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPE  235 (266)
Q Consensus       169 ~a~~~~g~~~~~~g~--~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~  235 (266)
                      .+++++|.+|+.+|+  ...+...|.+++...|.+ .+...++.+....++. ++....|.+.+...|.
T Consensus       123 ~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~a~~~~g~~~~~~~~~-~~A~~~~~~al~l~P~  189 (208)
T 3urz_A          123 AANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQ-YARYRDGLSKLFTTRY-EKARNSLQKVILRFPS  189 (208)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHH-HHHHHHHHHHHHHHTH-HHHHHHHHHHTTTSCC
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchh-HHHHHHHHHHHHccCH-HHHHHHHHHHHHhCCC
Confidence            999999998876654  344555566555333221 1222333333333433 3344446666665554

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.60  E-value=3e-15  Score=110.62  Aligned_cols=101  Identities=14%  Similarity=0.053  Sum_probs=92.5

Q ss_pred             hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 024531          136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE  215 (266)
Q Consensus       136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  215 (266)
                      ++.++|.++++.|+|++|+..|+++++++|.++.+++++|.++..+|++++|+.+|+++++++|++..++..++.+...+
T Consensus        15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~   94 (126)
T 4gco_A           15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAM   94 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHHHhcccCCCCCCc
Q 024531          216 KAVYKKQKEIYKGIFGPRPEPK  237 (266)
Q Consensus       216 ~~~~~~~~~~~~k~~~~~~~~~  237 (266)
                      ++..++.. .|++.+...|...
T Consensus        95 ~~~~~A~~-~~~~al~l~P~~~  115 (126)
T 4gco_A           95 REWSKAQR-AYEDALQVDPSNE  115 (126)
T ss_dssp             TCHHHHHH-HHHHHHHHCTTCH
T ss_pred             CCHHHHHH-HHHHHHHHCcCCH
Confidence            87766554 4788887766544

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.59  E-value=1.6e-14  Score=115.08  Aligned_cols=134  Identities=16%  Similarity=0.123  Sum_probs=109.4

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531           82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  161 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al  161 (266)
                      .+..++..|..++..|+|++|+..|.+++.  | ...                 ++.++|.++...|++++|+..|++++
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~--~-~~~-----------------~~~~lg~~~~~~g~~~~A~~~~~~al   64 (213)
T 1hh8_A            5 EAISLWNEGVLAADKKDWKGALDAFSAVQD--P-HSR-----------------ICFNIGCMYTILKNMTEAEKAFTRSI   64 (213)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSSS--C-CHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHcC--C-ChH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            455677889999999999999999998862  2 222                 58899999999999999999999999


Q ss_pred             cCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHHHHHHHHHHHHHH
Q 024531          162 GEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK----------------SIARELRLLAEHEKAVYKKQKEI  225 (266)
Q Consensus       162 ~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~----------------~~~~~l~~l~~~~~~~~~~~~~~  225 (266)
                      .++|+++.+++++|.++..+|++++|+.+|++++.+.|++.                .+...++.+...+++..++. ..
T Consensus        65 ~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~  143 (213)
T 1hh8_A           65 NRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE-EQ  143 (213)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHH-HH
T ss_pred             HhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHH-HH
Confidence            99999999999999999999999999999999999888776                88888888877776665554 44


Q ss_pred             HhcccCCCCCC
Q 024531          226 YKGIFGPRPEP  236 (266)
Q Consensus       226 ~~k~~~~~~~~  236 (266)
                      |.+++...+..
T Consensus       144 ~~~al~~~p~~  154 (213)
T 1hh8_A          144 LALATSMKSEP  154 (213)
T ss_dssp             HHHHHTTCCSG
T ss_pred             HHHHHHcCccc
Confidence            77777766554

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.59  E-value=3.1e-15  Score=108.67  Aligned_cols=97  Identities=21%  Similarity=0.115  Sum_probs=85.2

Q ss_pred             hhccHHHHHHHHHHHHhh---hccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHH
Q 024531           95 KEEKLEEAMQQYEMAIAY---MGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKAL  171 (266)
Q Consensus        95 ~~g~~~~A~~~y~~al~~---~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~  171 (266)
                      ..|++++|+..|.+++..   +|....                 ++.++|.+|..+|++++|+..++++++++|+++.++
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~-----------------~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   64 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAE-----------------CYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALR   64 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHH
Confidence            368999999999999999   565433                 699999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 024531          172 FRRGKARAELGQTDAAREDFLKAGKFAPEDKSIAREL  208 (266)
Q Consensus       172 ~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l  208 (266)
                      +++|.++..+|++++|+..|++++.++|+++.+....
T Consensus        65 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  101 (117)
T 3k9i_A           65 VFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYK  101 (117)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            9999999999999999999999999999998876433

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.57  E-value=6e-15  Score=133.02  Aligned_cols=129  Identities=23%  Similarity=0.296  Sum_probs=111.1

Q ss_pred             HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhH
Q 024531           81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  160 (266)
Q Consensus        81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~a  160 (266)
                      +.+..+..+|..++..|+|++|+..|+++++..|....                 ++.++|.+|..+|++++|+.+++++
T Consensus         4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~-----------------~~~~lg~~~~~~g~~~~A~~~~~~a   66 (477)
T 1wao_1            4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAI-----------------YYGNRSLAYLRTECYGYALGDATRA   66 (477)
T ss_dssp             HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHH-----------------HHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            45666778899999999999999999999999998655                 6999999999999999999999999


Q ss_pred             hcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHh
Q 024531          161 LGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLA--EHEKAVYKKQKEIYK  227 (266)
Q Consensus       161 l~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~--~~~~~~~~~~~~~~~  227 (266)
                      ++++|+++.+++++|.+|..+|++++|+..|+++++++|++..+...+..+.  ..+++.+++. ..+.
T Consensus        67 l~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~-~~~~  134 (477)
T 1wao_1           67 IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAI-AGDE  134 (477)
T ss_dssp             HHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHh-cccc
Confidence            9999999999999999999999999999999999999999999998888873  3334443333 3355

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.57  E-value=4.4e-15  Score=112.77  Aligned_cols=116  Identities=11%  Similarity=0.019  Sum_probs=102.5

Q ss_pred             HHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcC
Q 024531          103 MQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELG  182 (266)
Q Consensus       103 ~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g  182 (266)
                      -..|.+++.+.|.+..                 +++++|.++...|++++|+..+++++.++|+++.+++.+|.++..+|
T Consensus         7 ~~~~~~al~~~p~~~~-----------------~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g   69 (148)
T 2vgx_A            7 GGTIAMLNEISSDTLE-----------------QLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMG   69 (148)
T ss_dssp             CCSHHHHTTCCHHHHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             hhhHHHHHcCCHhhHH-----------------HHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHh
Confidence            3467888888887554                 68999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 024531          183 QTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEP  236 (266)
Q Consensus       183 ~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~~  236 (266)
                      +|++|+.+|++++.++|+++.+...++.+...+++..++... |.+.+...+..
T Consensus        70 ~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~-~~~al~~~p~~  122 (148)
T 2vgx_A           70 QYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESG-LFLAQELIANX  122 (148)
T ss_dssp             CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHH-HHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHH-HHHHHHHCcCC
Confidence            999999999999999999999999999998888877666554 77777665543

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.57  E-value=3.4e-14  Score=117.29  Aligned_cols=140  Identities=14%  Similarity=0.163  Sum_probs=116.9

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531           82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  161 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al  161 (266)
                      .+..+...|..++..|+|++|+..|.+++...|.+..              ...+++++|.+|..+|++++|+..|++++
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~--------------~~~a~~~lg~~~~~~~~~~~A~~~~~~~l   79 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEW--------------AADAQFYLARAYYQNKEYLLAASEYERFI   79 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTT--------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcc--------------hHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            3678899999999999999999999999999998632              23379999999999999999999999999


Q ss_pred             cCCCCc---hHHHHHHHHHHHH--------cCCHHHHHHHHHHHHhhCCCCHHHH-----------------HHHHHHHH
Q 024531          162 GEDENN---VKALFRRGKARAE--------LGQTDAAREDFLKAGKFAPEDKSIA-----------------RELRLLAE  213 (266)
Q Consensus       162 ~l~p~~---~~a~~~~g~~~~~--------~g~~~~A~~~~~~al~l~p~~~~~~-----------------~~l~~l~~  213 (266)
                      .++|++   +.+++.+|.++..        +|++++|+..|++++..+|+++.+.                 ..++.+..
T Consensus        80 ~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~  159 (261)
T 3qky_A           80 QIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYE  159 (261)
T ss_dssp             HHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998854   6789999999999        9999999999999999999986665                 45566666


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCC
Q 024531          214 HEKAVYKKQKEIYKGIFGPRPEP  236 (266)
Q Consensus       214 ~~~~~~~~~~~~~~k~~~~~~~~  236 (266)
                      ..++..++.. .|++++...|..
T Consensus       160 ~~g~~~~A~~-~~~~~l~~~p~~  181 (261)
T 3qky_A          160 RRELYEAAAV-TYEAVFDAYPDT  181 (261)
T ss_dssp             HTTCHHHHHH-HHHHHHHHCTTS
T ss_pred             HccCHHHHHH-HHHHHHHHCCCC
Confidence            6666655444 477777655543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.56  E-value=2.8e-14  Score=130.98  Aligned_cols=139  Identities=14%  Similarity=0.049  Sum_probs=122.5

Q ss_pred             HHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHH
Q 024531           79 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS  158 (266)
Q Consensus        79 ~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~  158 (266)
                      .+.....+...|..++..|++++|+..|+++++..|++..                 ++.++|.+|..+|++++|+..++
T Consensus        19 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-----------------~~~~lg~~~~~~g~~~~A~~~~~   81 (568)
T 2vsy_A           19 RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPE-----------------AVARLGRVRWTQQRHAEAAVLLQ   81 (568)
T ss_dssp             --CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHCCCHHHHHHHHH
Confidence            3445678899999999999999999999999999998655                 69999999999999999999999


Q ss_pred             hHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHhcccCCCCC
Q 024531          159 LVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE---KAVYKKQKEIYKGIFGPRPE  235 (266)
Q Consensus       159 ~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~---~~~~~~~~~~~~k~~~~~~~  235 (266)
                      ++++++|++..+++++|.++..+|++++|+..|+++++++|++..+...+..+...+   ++..++. ..|++.+...+.
T Consensus        82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~-~~~~~al~~~p~  160 (568)
T 2vsy_A           82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLS-AQVRAAVAQGVG  160 (568)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHH-HHHHHHHHHTCC
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHH-HHHHHHHhcCCc
Confidence            999999999999999999999999999999999999999999999999999998777   6655444 446666655444

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.55  E-value=5.9e-14  Score=113.62  Aligned_cols=110  Identities=14%  Similarity=0.095  Sum_probs=96.4

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  162 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~  162 (266)
                      +..++..|..++..|+|++|+..|.+++...|.+..              ...+++++|.+|.+.|+|++|+..|+++++
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~--------------~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~   69 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPY--------------SQQVQLDLIYAYYKNADLPLAQAAIDRFIR   69 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTT--------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH--------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            456788999999999999999999999999887543              223689999999999999999999999999


Q ss_pred             CCCCchH---HHHHHHHHHHH------------------cCCHHHHHHHHHHHHhhCCCCHHHHH
Q 024531          163 EDENNVK---ALFRRGKARAE------------------LGQTDAAREDFLKAGKFAPEDKSIAR  206 (266)
Q Consensus       163 l~p~~~~---a~~~~g~~~~~------------------~g~~~~A~~~~~~al~l~p~~~~~~~  206 (266)
                      .+|++..   +++.+|.++..                  +|++++|+..|+++++..|+++.+..
T Consensus        70 ~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~  134 (225)
T 2yhc_A           70 LNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTD  134 (225)
T ss_dssp             HCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHH
T ss_pred             HCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence            9999875   89999999986                  67999999999999999999875543

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.55  E-value=1.1e-13  Score=114.14  Aligned_cols=139  Identities=15%  Similarity=0.118  Sum_probs=117.8

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHH--------hhCHHHHH
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLK--------LKRYEEAI  154 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~--------~~~~~~A~  154 (266)
                      ...+...|..++..|+|++|+..|.+++...|.+..              ...+++++|.++..        .|++++|+
T Consensus        52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~--------------~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~  117 (261)
T 3qky_A           52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR--------------VPQAEYERAMCYYKLSPPYELDQTDTRKAI  117 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT--------------HHHHHHHHHHHHHHHCCCTTSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch--------------hHHHHHHHHHHHHHhcccccccchhHHHHH
Confidence            567889999999999999999999999999987543              23379999999999        99999999


Q ss_pred             HHHHhHhcCCCCchHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHH
Q 024531          155 GQCSLVLGEDENNVKAL-----------------FRRGKARAELGQTDAAREDFLKAGKFAPE---DKSIARELRLLAEH  214 (266)
Q Consensus       155 ~~~~~al~l~p~~~~a~-----------------~~~g~~~~~~g~~~~A~~~~~~al~l~p~---~~~~~~~l~~l~~~  214 (266)
                      ..+++++..+|++..+.                 +.+|.+|..+|+|++|+..|++++...|+   .+.++..++.+...
T Consensus       118 ~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~  197 (261)
T 3qky_A          118 EAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIA  197 (261)
T ss_dssp             HHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHH
Confidence            99999999999987666                 89999999999999999999999999998   46678888887765


Q ss_pred             H----------HHHHHHHHHHHhcccCCCCCC
Q 024531          215 E----------KAVYKKQKEIYKGIFGPRPEP  236 (266)
Q Consensus       215 ~----------~~~~~~~~~~~~k~~~~~~~~  236 (266)
                      +          ++. ++....|+++....|+.
T Consensus       198 ~g~~~~~~~~~~~~-~~A~~~~~~~~~~~p~~  228 (261)
T 3qky_A          198 YAEQSVRARQPERY-RRAVELYERLLQIFPDS  228 (261)
T ss_dssp             HHHTSCGGGHHHHH-HHHHHHHHHHHHHCTTC
T ss_pred             hcccchhhcccchH-HHHHHHHHHHHHHCCCC
Confidence            5          333 44555678887665543

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.55  E-value=9.7e-14  Score=101.15  Aligned_cols=130  Identities=22%  Similarity=0.242  Sum_probs=113.4

Q ss_pred             HHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcC
Q 024531           84 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE  163 (266)
Q Consensus        84 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l  163 (266)
                      ..+...|..++..|++++|+..|.+++...|....                 ++.++|.++...|++++|+..+.+++..
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----------------~~~~~a~~~~~~~~~~~A~~~~~~~~~~   64 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE-----------------AWYNLGNAYYKQGDYDEAIEYYQKALEL   64 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchh-----------------HHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            35678899999999999999999999999887544                 5889999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 024531          164 DENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFG  231 (266)
Q Consensus       164 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~  231 (266)
                      +|.+..+++.+|.++...|++++|+..+++++...|++..+...+..+....++..++. ..+.+++.
T Consensus        65 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~~~  131 (136)
T 2fo7_A           65 DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAI-EYYQKALE  131 (136)
T ss_dssp             CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH-HHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHH-HHHHHHHc
Confidence            99999999999999999999999999999999999999999888888876666555443 33555543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.55  E-value=1.3e-13  Score=106.99  Aligned_cols=113  Identities=12%  Similarity=0.118  Sum_probs=102.1

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHH-HHHhhCH--HHHHHHHH
Q 024531           82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAAC-LLKLKRY--EEAIGQCS  158 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~-~~~~~~~--~~A~~~~~  158 (266)
                      ....+...|..++..|++++|+..|.+++...|.+..                 ++.++|.+ +...|++  ++|+..++
T Consensus        43 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~-----------------~~~~la~~l~~~~~~~~~~~A~~~~~  105 (177)
T 2e2e_A           43 NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE-----------------LYAALATVLYYQASQHMTAQTRAMID  105 (177)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHH-----------------HHHHHHHHHHHHTTTCCCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH-----------------HHHHHHHHHHHhcCCcchHHHHHHHH
Confidence            4567889999999999999999999999999998655                 58899999 8899998  99999999


Q ss_pred             hHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024531          159 LVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL  211 (266)
Q Consensus       159 ~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l  211 (266)
                      +++.++|++..+++.+|.++..+|++++|+..|++++.++|++......+..+
T Consensus       106 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i  158 (177)
T 2e2e_A          106 KALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESI  158 (177)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHH
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHH
Confidence            99999999999999999999999999999999999999999987665555444

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.54  E-value=3.4e-14  Score=133.40  Aligned_cols=145  Identities=13%  Similarity=0.012  Sum_probs=123.3

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  162 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~  162 (266)
                      +..+..+|..++..|+|++|+..|+++++.+|++..                 +++++|.++..+|++++|+..|+++++
T Consensus       433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~-----------------a~~~lg~~~~~~g~~~~A~~~~~~al~  495 (681)
T 2pzi_A          433 VELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWR-----------------LVWYRAVAELLTGDYDSATKHFTEVLD  495 (681)
T ss_dssp             SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHH-----------------HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            356778899999999999999999999999999766                 699999999999999999999999999


Q ss_pred             CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcccchh
Q 024531          163 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKKNW  242 (266)
Q Consensus       163 l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~  242 (266)
                      ++|++..+++++|.++..+|+|++ +.+|+++++++|++..++..++.+...+++..++.. .|++++...+..  ..+|
T Consensus       496 l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~-~~~~al~l~P~~--~~a~  571 (681)
T 2pzi_A          496 TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR-TLDEVPPTSRHF--TTAR  571 (681)
T ss_dssp             HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHTSCTTSTTH--HHHH
T ss_pred             hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH-HHHhhcccCccc--HHHH
Confidence            999999999999999999999999 999999999999999999999999877777765544 478887655543  2444


Q ss_pred             HHHhHH
Q 024531          243 LIIFWQ  248 (266)
Q Consensus       243 ~~~~~~  248 (266)
                      ......
T Consensus       572 ~~~~~~  577 (681)
T 2pzi_A          572 LTSAVT  577 (681)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444333

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.53  E-value=2.1e-13  Score=112.37  Aligned_cols=126  Identities=18%  Similarity=0.086  Sum_probs=65.0

Q ss_pred             HHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhh--------hchhHHHH---HH---------HhhhhhhhhHHHH
Q 024531           84 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQ--------LFGKYRDM---AL---------AVKNPCHLNMAAC  143 (266)
Q Consensus        84 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~--------~~~~~~~~---~~---------~l~~~~~~n~a~~  143 (266)
                      +.+...|..++..|+|++|+..|.+++...|.+...-        ..+...+-   ..         .....++.++|.+
T Consensus         4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~   83 (272)
T 3u4t_A            4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI   83 (272)
T ss_dssp             -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence            3456777888888888888888888888877654310        00000000   00         0011124445555


Q ss_pred             HHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024531          144 LLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELR  209 (266)
Q Consensus       144 ~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~  209 (266)
                      +...|++++|+.+++++++++|.++.+++.+|.++..+|++++|+..|++++.++|++..+...++
T Consensus        84 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~  149 (272)
T 3u4t_A           84 LMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELG  149 (272)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHH
Confidence            555555555555555555555555555555555555555555555555555555555555544444

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.53  E-value=3.3e-13  Score=111.11  Aligned_cols=133  Identities=21%  Similarity=0.087  Sum_probs=112.7

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531           80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  159 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~  159 (266)
                      +..+..+...|..++..|++++|+..|.+++...|....                 ++.++|.++...|++++|+.++++
T Consensus        40 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-----------------~~~~la~~~~~~~~~~~A~~~~~~  102 (275)
T 1xnf_A           40 DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPE-----------------VFNYLGIYLTQAGNFDAAYEAFDS  102 (275)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHH-----------------HHHHHHHHHHHccCHHHHHHHHHH
Confidence            355778889999999999999999999999999998655                 699999999999999999999999


Q ss_pred             HhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 024531          160 VLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFG  231 (266)
Q Consensus       160 al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~  231 (266)
                      ++.++|.++.+++.+|.++..+|++++|+..|++++.++|++......+..+ ...+... +....+.+.+.
T Consensus       103 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~-~A~~~~~~~~~  172 (275)
T 1xnf_A          103 VLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEK-QAKEVLKQHFE  172 (275)
T ss_dssp             HHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHH-HHHHHHHHHHH
T ss_pred             HHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHH-HHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999998766555544 3333333 33334444443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.53  E-value=2.7e-13  Score=119.71  Aligned_cols=152  Identities=23%  Similarity=0.260  Sum_probs=125.3

Q ss_pred             HHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcC
Q 024531           84 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE  163 (266)
Q Consensus        84 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l  163 (266)
                      ......|..++..|++++|+..|.+++...|.+...             ...++.++|.++.+.|++++|+..+++++.+
T Consensus       258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  324 (450)
T 2y4t_A          258 NKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEY-------------TVRSKERICHCFSKDEKPVEAIRVCSEVLQM  324 (450)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHH-------------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHH-------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            334556999999999999999999999999885431             3346899999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCccc---c
Q 024531          164 DENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQK---K  240 (266)
Q Consensus       164 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~---~  240 (266)
                      +|+++.+++.+|.++..+|++++|+..|+++++++|+++.+...+..+....+.   .....++..++.....+..   .
T Consensus       325 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~---~~~~~~y~~lg~~~~~~~~~~~~  401 (450)
T 2y4t_A          325 EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQ---SQKRDYYKILGVKRNAKKQEIIK  401 (450)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHH---HHSCCSGGGSCSSTTCCTTHHHH
T ss_pred             CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhc---ccchhHHHHhCCCccCCHHHHHH
Confidence            999999999999999999999999999999999999999999999887655444   3334566777766655443   5


Q ss_pred             hhHHHhHHHHH
Q 024531          241 NWLIIFWQLLV  251 (266)
Q Consensus       241 ~~~~~~~~~~~  251 (266)
                      +|++...+|+.
T Consensus       402 ~y~~~~l~~~p  412 (450)
T 2y4t_A          402 AYRKLALQWHP  412 (450)
T ss_dssp             HHHHHHHHSCG
T ss_pred             HHHHHHHHhCC
Confidence            56555555543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.52  E-value=7.7e-14  Score=98.85  Aligned_cols=101  Identities=20%  Similarity=0.217  Sum_probs=94.4

Q ss_pred             HHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCC
Q 024531           85 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED  164 (266)
Q Consensus        85 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~  164 (266)
                      .+...|..++..|++++|+..|.+++...|....                 ++.++|.++...|++++|+..+++++.++
T Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----------------~~~~~a~~~~~~~~~~~A~~~~~~a~~~~   70 (112)
T 2kck_A            8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESK-----------------YWLMKGKALYNLERYEEAVDCYNYVINVI   70 (112)
T ss_dssp             GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHH-----------------HHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            4567899999999999999999999999988655                 58999999999999999999999999999


Q ss_pred             CC--chHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCH
Q 024531          165 EN--NVKALFRRGKARAEL-GQTDAAREDFLKAGKFAPEDK  202 (266)
Q Consensus       165 p~--~~~a~~~~g~~~~~~-g~~~~A~~~~~~al~l~p~~~  202 (266)
                      |.  +..+++.+|.++..+ |++++|++++++++...|+++
T Consensus        71 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           71 EDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             CCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             cccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence            99  999999999999999 999999999999999999753

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.52  E-value=2.2e-13  Score=104.98  Aligned_cols=131  Identities=19%  Similarity=0.199  Sum_probs=95.1

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  162 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~  162 (266)
                      ...+...|..++..|++++|+..|.+++...|....                 ++.++|.++...|++++|+..+++++.
T Consensus        42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----------------~~~~~a~~~~~~~~~~~A~~~~~~~~~  104 (186)
T 3as5_A           42 VDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVK-----------------VATVLGLTYVQVQKYDLAVPLLIKVAE  104 (186)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-----------------HHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            345566777777777777777777777777666443                 577788888888888888888888888


Q ss_pred             CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 024531          163 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFG  231 (266)
Q Consensus       163 l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~  231 (266)
                      .+|.++.+++.+|.++..+|++++|+..|++++..+|++..+...++.+....++..++. ..+.+++.
T Consensus       105 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~~~  172 (186)
T 3as5_A          105 ANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL-PHFKKANE  172 (186)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHH
T ss_pred             cCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH-HHHHHHHH
Confidence            888888888888888888888888888888888888888777777777766655554433 33455443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.52  E-value=6.4e-13  Score=113.06  Aligned_cols=122  Identities=22%  Similarity=0.244  Sum_probs=109.5

Q ss_pred             HHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcC
Q 024531           84 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE  163 (266)
Q Consensus        84 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l  163 (266)
                      ......|..++..|++++|+..|.+++...|.+...             ...++.++|.++...|++++|+..+++++.+
T Consensus       235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  301 (359)
T 3ieg_A          235 NKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEY-------------TVRSKERICHCFSKDEKPVEAIRICSEVLQM  301 (359)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHH-------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHH-------------HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            344566999999999999999999999999986432             3346888999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 024531          164 DENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAV  218 (266)
Q Consensus       164 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~  218 (266)
                      +|+++.+++.+|.++..+|++++|+..|+++++++|+++.+...+..+...+++.
T Consensus       302 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~  356 (359)
T 3ieg_A          302 EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQS  356 (359)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999887666553

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.52  E-value=1.6e-13  Score=123.47  Aligned_cols=133  Identities=14%  Similarity=-0.062  Sum_probs=112.8

Q ss_pred             HHHHHHHhHHHHhhccH-HHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531           83 ADRRKMDGNALFKEEKL-EEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  161 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~-~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al  161 (266)
                      +..+..+|..++..|+| ++|+..|.+++.++|....                 ++.++|.+|...|++++|+..|++++
T Consensus       102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~-----------------a~~~lg~~~~~~g~~~~A~~~~~~al  164 (474)
T 4abn_A          102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVE-----------------AWNQLGEVYWKKGDVTSAHTCFSGAL  164 (474)
T ss_dssp             HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            56677889999999999 9999999999999998655                 68899999999999999999999999


Q ss_pred             cCCCCchHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH--------HHHHHHHHH
Q 024531          162 GEDENNVKALFRRGKARAEL---------GQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE--------KAVYKKQKE  224 (266)
Q Consensus       162 ~l~p~~~~a~~~~g~~~~~~---------g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~--------~~~~~~~~~  224 (266)
                      +++|+ ..+++.+|.++..+         |++++|+..|+++++++|++..++..++.+...+        ++..++.. 
T Consensus       165 ~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~-  242 (474)
T 4abn_A          165 THCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALS-  242 (474)
T ss_dssp             TTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH-
T ss_pred             hhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHH-
Confidence            99988 68899999999999         9999999999999999999999988888887766        66655444 


Q ss_pred             HHhcccCCCC
Q 024531          225 IYKGIFGPRP  234 (266)
Q Consensus       225 ~~~k~~~~~~  234 (266)
                      .|.+.+...+
T Consensus       243 ~~~~al~~~p  252 (474)
T 4abn_A          243 AYAQAEKVDR  252 (474)
T ss_dssp             HHHHHHHHCG
T ss_pred             HHHHHHHhCC
Confidence            4677765433

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.52  E-value=2.1e-13  Score=110.99  Aligned_cols=112  Identities=13%  Similarity=0.004  Sum_probs=59.9

Q ss_pred             hHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchH
Q 024531           90 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVK  169 (266)
Q Consensus        90 g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~  169 (266)
                      +..+...|++++|+..|.+++...|....                 ++.++|.++...|++++|+..+++++.++|.++.
T Consensus       112 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~  174 (258)
T 3uq3_A          112 ADILTKLRNAEKELKKAEAEAYVNPEKAE-----------------EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDAR  174 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCHHHHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             hHHHHHHhHHHHHHHHHHHHHHcCcchHH-----------------HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHH
Confidence            44555555555555555555555444322                 3555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 024531          170 ALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAV  218 (266)
Q Consensus       170 a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~  218 (266)
                      +++.+|.++..+|++++|+..|++++.++|++..+...++.+....++.
T Consensus       175 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~  223 (258)
T 3uq3_A          175 GYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEY  223 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhH
Confidence            5555555555555555555555555555555555555555554444433

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.51  E-value=3.4e-14  Score=106.67  Aligned_cols=116  Identities=8%  Similarity=0.030  Sum_probs=98.3

Q ss_pred             HHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCC
Q 024531          104 QQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQ  183 (266)
Q Consensus       104 ~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~  183 (266)
                      ..|.+++...|.+..                 +++++|.+++..|++++|+..|++++.++|+++.+++.+|.++..+|+
T Consensus         5 ~~l~~al~~~p~~~~-----------------~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~   67 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLE-----------------QLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGL   67 (142)
T ss_dssp             ----CCTTCCHHHHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             hhHHHHHcCCHHHHH-----------------HHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhh
Confidence            456777777777544                 588999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCc
Q 024531          184 TDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPK  237 (266)
Q Consensus       184 ~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~~~  237 (266)
                      |++|+.+|++++.++|+++.+...++.+...+++..++... |.+.+...+...
T Consensus        68 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~-~~~al~~~p~~~  120 (142)
T 2xcb_A           68 YEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESG-FYSARALAAAQP  120 (142)
T ss_dssp             HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHH-HHHHHHHHHTCG
T ss_pred             HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCCCc
Confidence            99999999999999999999999999998888877665554 677776555433

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.51  E-value=2.8e-13  Score=121.88  Aligned_cols=123  Identities=15%  Similarity=0.054  Sum_probs=114.1

Q ss_pred             HHHHHHhHHHHhh---------ccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHh-------
Q 024531           84 DRRKMDGNALFKE---------EKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKL-------  147 (266)
Q Consensus        84 ~~~~~~g~~~~~~---------g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~-------  147 (266)
                      ..+...|..+...         |++++|+..|.+++++.|++..                 ++.++|.+|..+       
T Consensus       171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~-----------------~~~~lg~~~~~~~~~~~~~  233 (474)
T 4abn_A          171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGR-----------------SWYILGNAYLSLYFNTGQN  233 (474)
T ss_dssp             HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHHHHhhccc
Confidence            5677889999999         9999999999999999999765                 699999999999       


Q ss_pred             -hCHHHHHHHHHhHhcCCC---CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 024531          148 -KRYEEAIGQCSLVLGEDE---NNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQK  223 (266)
Q Consensus       148 -~~~~~A~~~~~~al~l~p---~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~  223 (266)
                       |++++|+..|++++.++|   +++.+++++|.+|..+|++++|+..|+++++++|++..++..+..+...+++..++..
T Consensus       234 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~  313 (474)
T 4abn_A          234 PKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLE  313 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence             999999999999999999   9999999999999999999999999999999999999999999999888877665544

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.50  E-value=5e-13  Score=108.68  Aligned_cols=127  Identities=16%  Similarity=0.089  Sum_probs=112.2

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  162 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~  162 (266)
                      +..+...|..+...|++++|+..|.+++.+.|.                         +.++..+|++++|+..+++++.
T Consensus        79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------------------------~~~~~~~~~~~~a~~~~~~~~~  133 (258)
T 3uq3_A           79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-------------------------ADILTKLRNAEKELKKAEAEAY  133 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------------------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-------------------------hHHHHHHhHHHHHHHHHHHHHH
Confidence            678889999999999999999999999998765                         2457778999999999999999


Q ss_pred             CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 024531          163 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPE  235 (266)
Q Consensus       163 l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~  235 (266)
                      .+|.++.+++.+|.++...|++++|+..|++++.++|++..+...++.+....++..++.. .+.+++...+.
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~al~~~~~  205 (258)
T 3uq3_A          134 VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIA-DCNKAIEKDPN  205 (258)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTT
T ss_pred             cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHH-HHHHHHHhCHH
Confidence            9999999999999999999999999999999999999999999999999877777665544 46777665544

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.50  E-value=3.2e-13  Score=117.37  Aligned_cols=97  Identities=18%  Similarity=0.108  Sum_probs=61.7

Q ss_pred             hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 024531          136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE  215 (266)
Q Consensus       136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  215 (266)
                      ++.++|.++.+.|++++|+..++++++++|.++.+++.+|.++...|++++|+..|+++++++|++..+...+..+....
T Consensus       273 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  352 (388)
T 1w3b_A          273 AYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ  352 (388)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence            46666666666666666666666666666666666666666666666666666666666666666666666666665555


Q ss_pred             HHHHHHHHHHHhcccCCC
Q 024531          216 KAVYKKQKEIYKGIFGPR  233 (266)
Q Consensus       216 ~~~~~~~~~~~~k~~~~~  233 (266)
                      ++..++. ..|++++...
T Consensus       353 g~~~~A~-~~~~~a~~~~  369 (388)
T 1w3b_A          353 GKLQEAL-MHYKEAIRIS  369 (388)
T ss_dssp             TCCHHHH-HHHHHHHTTC
T ss_pred             CCHHHHH-HHHHHHHhhC
Confidence            4443333 3355665543

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.50  E-value=1e-13  Score=112.01  Aligned_cols=133  Identities=15%  Similarity=0.108  Sum_probs=104.6

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531           82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  161 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al  161 (266)
                      ....+...|..++..|++++|+..|.+++...|....                 ++.++|.++...|++++|+..+++++
T Consensus        56 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----------------~~~~la~~~~~~~~~~~A~~~~~~~~  118 (243)
T 2q7f_A           56 DAIPYINFANLLSSVNELERALAFYDKALELDSSAAT-----------------AYYGAGNVYVVKEMYKEAKDMFEKAL  118 (243)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchH-----------------HHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            4667788999999999999999999999999887544                 57778888888888888888888888


Q ss_pred             cCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 024531          162 GEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGP  232 (266)
Q Consensus       162 ~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~  232 (266)
                      ..+|.+..+++.+|.++..+|++++|+..|++++.++|++..+...++.+....++..++.. .+.+++..
T Consensus       119 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~  188 (243)
T 2q7f_A          119 RAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALS-QFAAVTEQ  188 (243)
T ss_dssp             HHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH-HHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHh
Confidence            88888888888888888888888888888888888888888877777777666655544433 35555543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.50  E-value=2.7e-13  Score=114.40  Aligned_cols=136  Identities=12%  Similarity=0.031  Sum_probs=107.0

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHH----HHhhCHHHHHHHHH
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACL----LKLKRYEEAIGQCS  158 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~----~~~~~~~~A~~~~~  158 (266)
                      ...+...|..+...|++++|+..|.+++...|+..                   ..+++.++    ...|++++|+..++
T Consensus       130 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~-------------------~~~l~~a~~~l~~~~~~~~eA~~~~~  190 (291)
T 3mkr_A          130 LECMAMTVQILLKLDRLDLARKELKKMQDQDEDAT-------------------LTQLATAWVSLAAGGEKLQDAYYIFQ  190 (291)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-------------------HHHHHHHHHHHHHCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcH-------------------HHHHHHHHHHHHhCchHHHHHHHHHH
Confidence            45667788888888999999999999988887642                   22333332    23478999999999


Q ss_pred             hHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCc
Q 024531          159 LVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPK  237 (266)
Q Consensus       159 ~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~~~  237 (266)
                      +++..+|+++.+++.+|.++..+|++++|+..|++++.++|++++++..+..+....++..++...+++++....|+..
T Consensus       191 ~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~  269 (291)
T 3mkr_A          191 EMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP  269 (291)
T ss_dssp             HHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCh
Confidence            9999999999999999999999999999999999999999999999888888877777666666667777776655543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.49  E-value=3.1e-14  Score=133.69  Aligned_cols=115  Identities=11%  Similarity=0.026  Sum_probs=106.8

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531           82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  161 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al  161 (266)
                      ....+..+|..++..|+|++|+..|+++++++|++..                 +++++|.++..+|++++ +..|++++
T Consensus       466 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~-----------------~~~~lg~~~~~~g~~~~-~~~~~~al  527 (681)
T 2pzi_A          466 RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELA-----------------PKLALAATAELAGNTDE-HKFYQTVW  527 (681)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSH-----------------HHHHHHHHHHHHTCCCT-TCHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH-----------------HHHHHHHHHHHcCChHH-HHHHHHHH
Confidence            3456778899999999999999999999999999765                 69999999999999999 99999999


Q ss_pred             cCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024531          162 GEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEH  214 (266)
Q Consensus       162 ~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  214 (266)
                      +++|++..+++++|.++..+|++++|+.+|+++++++|++..++..+..+...
T Consensus       528 ~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~  580 (681)
T 2pzi_A          528 STNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLS  580 (681)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred             HhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999888887533

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.49  E-value=3.6e-13  Score=103.77  Aligned_cols=135  Identities=16%  Similarity=0.118  Sum_probs=119.7

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531           82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  161 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al  161 (266)
                      .+..+...|..++..|++++|+..|.+++...|....                 ++.++|.++...|++++|+..+++++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~A~~~~~~~~   69 (186)
T 3as5_A            7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVD-----------------VALHLGIAYVKTGAVDRGTELLERSL   69 (186)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4667888999999999999999999999999887654                 68999999999999999999999999


Q ss_pred             cCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 024531          162 GEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRP  234 (266)
Q Consensus       162 ~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~  234 (266)
                      ..+|.+..+++.+|.++...|++++|...|++++..+|++..+...++.+....++..++.. .+.+++...+
T Consensus        70 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~-~~~~~~~~~~  141 (186)
T 3as5_A           70 ADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAID-SFKIALGLRP  141 (186)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCT
T ss_pred             hcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHH-HHHHHHhcCc
Confidence            99999999999999999999999999999999999999999999999988777666655444 4666665443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.48  E-value=4.8e-14  Score=109.39  Aligned_cols=130  Identities=10%  Similarity=-0.002  Sum_probs=110.8

Q ss_pred             hHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchH
Q 024531           90 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVK  169 (266)
Q Consensus        90 g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~  169 (266)
                      +..++..|++++|+..|.+++...|.+..                 ++.++|.++...|++++|+..+.+++.++|+++.
T Consensus        17 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~-----------------~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~   79 (177)
T 2e2e_A           17 LHQFASQQNPEAQLQALQDKIRANPQNSE-----------------QWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE   79 (177)
T ss_dssp             TCCCC-----CCCCHHHHHHHHHCCSCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHH
T ss_pred             hhhhhhccCHHHHHHHHHHHHHhCCCcHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence            44567789999999999999999998665                 6999999999999999999999999999999999


Q ss_pred             HHHHHHHH-HHHcCCH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCc
Q 024531          170 ALFRRGKA-RAELGQT--DAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPK  237 (266)
Q Consensus       170 a~~~~g~~-~~~~g~~--~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~~~  237 (266)
                      +++.+|.+ +...|++  ++|+..|++++.++|++..+...++.+....++..++.. .|.+++...+...
T Consensus        80 ~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~p~~~  149 (177)
T 2e2e_A           80 LYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIE-LWQKVMDLNSPRI  149 (177)
T ss_dssp             HHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHTCCTTS
T ss_pred             HHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHH-HHHHHHhhCCCCc
Confidence            99999999 8899999  999999999999999999999999999877777765544 4788877766543

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.48  E-value=6.4e-13  Score=115.49  Aligned_cols=153  Identities=14%  Similarity=0.104  Sum_probs=119.2

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhh--------chhHHHHH---------HHhhhhhhhhHHHHH
Q 024531           82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQL--------FGKYRDMA---------LAVKNPCHLNMAACL  144 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~--------~~~~~~~~---------~~l~~~~~~n~a~~~  144 (266)
                      .+..+...|..+...|++++|+..|.+++...|.....-.        .+...+..         ..-...++.++|.++
T Consensus       168 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  247 (388)
T 1w3b_A          168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVY  247 (388)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHH
Confidence            3567778888888888888888888888888887543200        01100100         011234688999999


Q ss_pred             HHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 024531          145 LKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKE  224 (266)
Q Consensus       145 ~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~  224 (266)
                      ...|++++|+..+++++.++|+++.+++.+|.++...|++++|+..|+++++++|++..+...+..+....++..++ ..
T Consensus       248 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A-~~  326 (388)
T 1w3b_A          248 YEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEA-VR  326 (388)
T ss_dssp             HHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHH-HH
T ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHH-HH
Confidence            99999999999999999999999999999999999999999999999999999999999999999887766666554 45


Q ss_pred             HHhcccCCCCC
Q 024531          225 IYKGIFGPRPE  235 (266)
Q Consensus       225 ~~~k~~~~~~~  235 (266)
                      .|.+++...+.
T Consensus       327 ~~~~al~~~p~  337 (388)
T 1w3b_A          327 LYRKALEVFPE  337 (388)
T ss_dssp             HHHHHTTSCTT
T ss_pred             HHHHHHhcCCC
Confidence            57888776544

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.48  E-value=5.5e-13  Score=106.09  Aligned_cols=103  Identities=15%  Similarity=0.068  Sum_probs=96.2

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  162 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~  162 (266)
                      ...+...|..++..|+|++|+..|.+++...|....                 ++.++|.++..+|++++|+.++++++.
T Consensus        37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------------~~~~lg~~~~~~~~~~~A~~~~~~al~   99 (213)
T 1hh8_A           37 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV-----------------AYFQRGMLYYQTEKYDLAIKDLKEALI   99 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchH-----------------HHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            457889999999999999999999999999998655                 699999999999999999999999999


Q ss_pred             CCCCch----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 024531          163 EDENNV----------------KALFRRGKARAELGQTDAAREDFLKAGKFAPEDK  202 (266)
Q Consensus       163 l~p~~~----------------~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~  202 (266)
                      +.|.+.                .+++++|.++..+|++++|+..|++++.++|++.
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  155 (213)
T 1hh8_A          100 QLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR  155 (213)
T ss_dssp             TTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred             hCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence            888766                9999999999999999999999999999999864

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.48  E-value=1.9e-12  Score=105.47  Aligned_cols=99  Identities=19%  Similarity=0.149  Sum_probs=84.0

Q ss_pred             hhhhhHHHHHHHhhCHHHHHHHHHhHhc--CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024531          135 PCHLNMAACLLKLKRYEEAIGQCSLVLG--EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLA  212 (266)
Q Consensus       135 ~~~~n~a~~~~~~~~~~~A~~~~~~al~--l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  212 (266)
                      .++.++|.++...|++++|+..+++++.  .+|.+..+++.+|.++..+|++++|+..|++++.++|++..+...+..+.
T Consensus       106 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  185 (252)
T 2ho1_A          106 RVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLL  185 (252)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence            3688899999999999999999999999  88888999999999999999999999999999999999999988888887


Q ss_pred             HHHHHHHHHHHHHHhcccCCCC
Q 024531          213 EHEKAVYKKQKEIYKGIFGPRP  234 (266)
Q Consensus       213 ~~~~~~~~~~~~~~~k~~~~~~  234 (266)
                      ...++..++. ..+.+++...+
T Consensus       186 ~~~g~~~~A~-~~~~~~~~~~~  206 (252)
T 2ho1_A          186 YKEREYVPAR-QYYDLFAQGGG  206 (252)
T ss_dssp             HHTTCHHHHH-HHHHHHHTTSC
T ss_pred             HHcCCHHHHH-HHHHHHHHhCc
Confidence            7776665554 44677766544

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.48  E-value=1.6e-13  Score=118.31  Aligned_cols=106  Identities=20%  Similarity=0.070  Sum_probs=93.0

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  162 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~  162 (266)
                      +..+...|..++..|++++|+..|.+++...|.+..                 ++.++|.++...|++++|+..+++++.
T Consensus        65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~-----------------~~~~lg~~~~~~g~~~~A~~~~~~al~  127 (365)
T 4eqf_A           65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAE-----------------AWQFLGITQAENENEQAAIVALQRCLE  127 (365)
T ss_dssp             CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHH-----------------HHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            345778899999999999999999999999998655                 588999999999999999999999999


Q ss_pred             CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 024531          163 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIA  205 (266)
Q Consensus       163 l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~  205 (266)
                      ++|++..+++.+|.++..+|++++|+..|++++.++|++..+.
T Consensus       128 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  170 (365)
T 4eqf_A          128 LQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLV  170 (365)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-
T ss_pred             cCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHH
Confidence            9999999999999999999999999999999888887654433

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.48  E-value=4.4e-13  Score=108.31  Aligned_cols=135  Identities=19%  Similarity=0.164  Sum_probs=119.4

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  162 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~  162 (266)
                      ...+...|..++..|++++|+..|.+++...|....                 ++.++|.++...|++++|+..+++++.
T Consensus        91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----------------~~~~~a~~~~~~~~~~~A~~~~~~~~~  153 (243)
T 2q7f_A           91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGD-----------------LFYMLGTVLVKLEQPKLALPYLQRAVE  153 (243)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHH-----------------HHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            455677899999999999999999999999988654                 588999999999999999999999999


Q ss_pred             CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 024531          163 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPE  235 (266)
Q Consensus       163 l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~  235 (266)
                      .+|.+..+++.+|.++...|++++|+..|++++..+|++..+...++.+....++..++. ..|++++...+.
T Consensus       154 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~~~~~p~  225 (243)
T 2q7f_A          154 LNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKAL-EMLDKAIDIQPD  225 (243)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHH-HHHHHHHHHCTT
T ss_pred             hCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHH-HHHHHHHccCcc
Confidence            999999999999999999999999999999999999999999999999887776665544 447777765444

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.48  E-value=2.5e-13  Score=117.02  Aligned_cols=129  Identities=15%  Similarity=0.086  Sum_probs=110.5

Q ss_pred             HhHHHHhhccHHHHHHHHHHHHhhhcc--chhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCC
Q 024531           89 DGNALFKEEKLEEAMQQYEMAIAYMGD--DFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDEN  166 (266)
Q Consensus        89 ~g~~~~~~g~~~~A~~~y~~al~~~~~--~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~  166 (266)
                      .|..+...|++++|+..|.+++...|.  +..                 ++.++|.++...|++++|+..+++++.++|+
T Consensus       183 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-----------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  245 (365)
T 4eqf_A          183 MSKSPVDSSVLEGVKELYLEAAHQNGDMIDPD-----------------LQTGLGVLFHLSGEFNRAIDAFNAALTVRPE  245 (365)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHSCSSCCHH-----------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHHhCcCccCHH-----------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            478889999999999999999999998  444                 5899999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 024531          167 NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPE  235 (266)
Q Consensus       167 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~  235 (266)
                      ++.+++.+|.++..+|++++|+..|+++++++|++..+...++.+...+++..++.. .|++++...+.
T Consensus       246 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~al~~~~~  313 (365)
T 4eqf_A          246 DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVS-NFLTALSLQRK  313 (365)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH-HHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHH-HHHHHHHhCcc
Confidence            999999999999999999999999999999999999999999999887777665544 46777655443

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.47  E-value=6.9e-13  Score=111.79  Aligned_cols=152  Identities=13%  Similarity=0.046  Sum_probs=112.8

Q ss_pred             HHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhh--------hchhHHHH---HHH------hhhhhhhhHHHHHHH
Q 024531           84 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQ--------LFGKYRDM---ALA------VKNPCHLNMAACLLK  146 (266)
Q Consensus        84 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~--------~~~~~~~~---~~~------l~~~~~~n~a~~~~~  146 (266)
                      ..+...|..++..|++++|+..|.+++...|......        ..+...+-   ...      -...++.++|.++..
T Consensus       126 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~  205 (330)
T 3hym_B          126 PAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQ  205 (330)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            4455666666666666666666666666666532210        01111110   000      113468899999999


Q ss_pred             hhCHHHHHHHHHhHhcCC---------CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 024531          147 LKRYEEAIGQCSLVLGED---------ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKA  217 (266)
Q Consensus       147 ~~~~~~A~~~~~~al~l~---------p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~  217 (266)
                      .|++++|+..+++++.+.         |.++.+++.+|.++..+|++++|+..|++++.++|++..+...++.+....++
T Consensus       206 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~  285 (330)
T 3hym_B          206 NGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGN  285 (330)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC
T ss_pred             cccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhcc
Confidence            999999999999999886         67788999999999999999999999999999999999999999999888777


Q ss_pred             HHHHHHHHHhcccCCCCCC
Q 024531          218 VYKKQKEIYKGIFGPRPEP  236 (266)
Q Consensus       218 ~~~~~~~~~~k~~~~~~~~  236 (266)
                      ..++. ..|.+++...+..
T Consensus       286 ~~~A~-~~~~~al~~~p~~  303 (330)
T 3hym_B          286 FENAV-DYFHTALGLRRDD  303 (330)
T ss_dssp             HHHHH-HHHHTTTTTCSCC
T ss_pred             HHHHH-HHHHHHHccCCCc
Confidence            76554 4578888766543

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.47  E-value=4e-13  Score=110.67  Aligned_cols=128  Identities=15%  Similarity=0.078  Sum_probs=96.7

Q ss_pred             HhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCch
Q 024531           89 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNV  168 (266)
Q Consensus        89 ~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~  168 (266)
                      .|..+...|++++|+..|.+++...|...                 .++.++|.+|...|++++|+..+++++.++|.++
T Consensus        80 lg~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~  142 (272)
T 3u4t_A           80 YGKILMKKGQDSLAIQQYQAAVDRDTTRL-----------------DMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDP  142 (272)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCT-----------------HHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcCcccH-----------------HHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcH
Confidence            34445555555555555555555555433                 3799999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH--HHHHHHHHhcccCCC
Q 024531          169 KALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAV--YKKQKEIYKGIFGPR  233 (266)
Q Consensus       169 ~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~--~~~~~~~~~k~~~~~  233 (266)
                      .+++.+|...+..+++++|+..|+++++++|++..+...++.+....+..  .+.....|.+++...
T Consensus       143 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~  209 (272)
T 3u4t_A          143 KVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVC  209 (272)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHH
Confidence            99999994455566999999999999999999999988888876655431  122344567766543

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.47  E-value=1.4e-12  Score=105.54  Aligned_cols=138  Identities=11%  Similarity=-0.043  Sum_probs=113.6

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHH----------------
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLK----------------  146 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~----------------  146 (266)
                      ...+..+|..++..|+|++|+..|+++++..|++..              ...+++++|.++..                
T Consensus        41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~--------------~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~  106 (225)
T 2yhc_A           41 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN--------------IDYVMYMRGLTNMALDDSALQGFFGVDRSD  106 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT--------------HHHHHHHHHHHHHHHHC-------------
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc--------------HHHHHHHHHHHHHhhhhhhhhhhhccchhh
Confidence            456788999999999999999999999999998653              11257788888776                


Q ss_pred             --hhCHHHHHHHHHhHhcCCCCchHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HH
Q 024531          147 --LKRYEEAIGQCSLVLGEDENNVKAL-----------------FRRGKARAELGQTDAAREDFLKAGKFAPEDK---SI  204 (266)
Q Consensus       147 --~~~~~~A~~~~~~al~l~p~~~~a~-----------------~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~---~~  204 (266)
                        .|++++|+..++++++.+|++..+.                 +.+|.+|...|+|++|+..|+++++..|+++   .+
T Consensus       107 ~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a  186 (225)
T 2yhc_A          107 RDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDA  186 (225)
T ss_dssp             -CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHH
Confidence              5789999999999999999987654                 6789999999999999999999999999986   66


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 024531          205 ARELRLLAEHEKAVYKKQKEIYKGIFGPRPE  235 (266)
Q Consensus       205 ~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~  235 (266)
                      +..++.+...+++..++.. .++++....+.
T Consensus       187 ~~~l~~~~~~~g~~~~A~~-~~~~l~~~~~~  216 (225)
T 2yhc_A          187 LPLMENAYRQMQMNAQAEK-VAKIIAANSSN  216 (225)
T ss_dssp             HHHHHHHHHHTTCHHHHHH-HHHHHHHCCSC
T ss_pred             HHHHHHHHHHcCCcHHHHH-HHHHHHhhCCC
Confidence            7778888777777766544 46666554443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.47  E-value=5.6e-13  Score=113.41  Aligned_cols=110  Identities=23%  Similarity=0.337  Sum_probs=103.8

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  162 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~  162 (266)
                      ++.+...|..++..|+|++|+..|.+++...|....                 ++.++|.++...|++++|+..+++++.
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~-----------------~~~~~a~~~~~~~~~~~A~~~~~~~~~   65 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYI-----------------AYYRRATVFLAMGKSKAALPDLTKVIA   65 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHH-----------------HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            567889999999999999999999999999998655                 699999999999999999999999999


Q ss_pred             CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCHHHHHHHH
Q 024531          163 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAP---EDKSIARELR  209 (266)
Q Consensus       163 l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p---~~~~~~~~l~  209 (266)
                      ++|++..+++.+|.++..+|++++|+..|++++.++|   ++..+...+.
T Consensus        66 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~  115 (359)
T 3ieg_A           66 LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLV  115 (359)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHH
T ss_pred             hCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHH
Confidence            9999999999999999999999999999999999999   8888887774

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.46  E-value=1.3e-12  Score=103.89  Aligned_cols=151  Identities=12%  Similarity=0.009  Sum_probs=102.0

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhh--------hchhHHHH---HH------HhhhhhhhhHHHHHH
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQ--------LFGKYRDM---AL------AVKNPCHLNMAACLL  145 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~--------~~~~~~~~---~~------~l~~~~~~n~a~~~~  145 (266)
                      +..+...|..++..|++++|+..|.+++...|.....-        ..+...+-   ..      .-...++.++|.++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~   87 (225)
T 2vq2_A            8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLC   87 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            44455556666666666666666666666555432210        00110000   00      001236788889999


Q ss_pred             Hh-hCHHHHHHHHHhHhc--CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 024531          146 KL-KRYEEAIGQCSLVLG--EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQ  222 (266)
Q Consensus       146 ~~-~~~~~A~~~~~~al~--l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~  222 (266)
                      .. |++++|+..+++++.  .+|.+..+++.+|.++..+|++++|+..|++++..+|++..+...++.+....++..++.
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  167 (225)
T 2vq2_A           88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDAD  167 (225)
T ss_dssp             TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHH
Confidence            99 999999999999988  667778888899999999999999999999999999988888888888877766665544


Q ss_pred             HHHHhcccCCCC
Q 024531          223 KEIYKGIFGPRP  234 (266)
Q Consensus       223 ~~~~~k~~~~~~  234 (266)
                      . .+.+++...+
T Consensus       168 ~-~~~~~~~~~~  178 (225)
T 2vq2_A          168 Y-YFKKYQSRVE  178 (225)
T ss_dssp             H-HHHHHHHHHC
T ss_pred             H-HHHHHHHhCC
Confidence            4 4666665443

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.46  E-value=7e-13  Score=111.49  Aligned_cols=143  Identities=13%  Similarity=0.078  Sum_probs=114.6

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531           82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  161 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al  161 (266)
                      ....+...|..+...|++++|+..|++++..+|++..                 ++.++|.++...|++++|+..+++++
T Consensus       116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~-----------------a~~~la~~~~~~g~~~~A~~~l~~~~  178 (287)
T 3qou_A          116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGE-----------------IGLLLAETLIALNRSEDAEAVLXTIP  178 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHH-----------------HHHHHHHHHHHTTCHHHHHHHHTTSC
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchh-----------------HHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            4566789999999999999999999999999999765                 68999999999999999999999988


Q ss_pred             cCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcccch
Q 024531          162 GEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKKN  241 (266)
Q Consensus       162 ~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~  241 (266)
                      ..+|+....+...+..+...++.++|+..|++++.++|++..++..++.+....++..++... |.+++...+......+
T Consensus       179 ~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~-l~~~l~~~p~~~~~~a  257 (287)
T 3qou_A          179 LQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALEL-LFGHLRXDLTAADGQT  257 (287)
T ss_dssp             GGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHHCTTGGGGHH
T ss_pred             hhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHH-HHHHHhcccccccchH
Confidence            888877777777777777888888888888888888888888888888777666666555544 5666665555433333


Q ss_pred             h
Q 024531          242 W  242 (266)
Q Consensus       242 ~  242 (266)
                      |
T Consensus       258 ~  258 (287)
T 3qou_A          258 R  258 (287)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.46  E-value=6.9e-13  Score=103.08  Aligned_cols=140  Identities=12%  Similarity=0.037  Sum_probs=113.4

Q ss_pred             HHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcC
Q 024531           84 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE  163 (266)
Q Consensus        84 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l  163 (266)
                      +.+...|..++..|++++|+..|.+++..+|++..                 ++.++|.++...|++++|+..+++++..
T Consensus         7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~-----------------a~~~la~~~~~~g~~~~A~~~~~~a~~~   69 (176)
T 2r5s_A            7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGD-----------------VKLAKADCLLETKQFELAQELLATIPLE   69 (176)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHH-----------------HHHHHHHHHHHTTCHHHHHHHHTTCCGG
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH-----------------HHHHHHHHHHHCCCHHHHHHHHHHhhhc
Confidence            45678899999999999999999999999999766                 6999999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcccchh
Q 024531          164 DENNVKALFRRGKARA-ELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKKNW  242 (266)
Q Consensus       164 ~p~~~~a~~~~g~~~~-~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~  242 (266)
                      +| ++..+..++.+.. ..+...+|+..|+++++++|+++.++..++.+....++..++... |.+++...|......+|
T Consensus        70 ~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~-~~~~l~~~p~~~~~~a~  147 (176)
T 2r5s_A           70 YQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALEL-LWNILKVNLGAQDGEVK  147 (176)
T ss_dssp             GC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHH-HHHHHTTCTTTTTTHHH
T ss_pred             cC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHH-HHHHHHhCcccChHHHH
Confidence            99 7776666664432 333445689999999999999999999999988777777655544 78888777665444444

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.46  E-value=6.1e-13  Score=114.25  Aligned_cols=109  Identities=14%  Similarity=0.086  Sum_probs=63.5

Q ss_pred             hhccHHHHHHHHHHHHhhhcc--chhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHH
Q 024531           95 KEEKLEEAMQQYEMAIAYMGD--DFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALF  172 (266)
Q Consensus        95 ~~g~~~~A~~~y~~al~~~~~--~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~  172 (266)
                      ..|++++|+..|.+++...|.  ...                 ++.++|.++...|++++|+..+++++.++|+++.+++
T Consensus       193 ~~~~~~~A~~~~~~a~~~~p~~~~~~-----------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  255 (368)
T 1fch_A          193 SDSLFLEVKELFLAAVRLDPTSIDPD-----------------VQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWN  255 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTSCCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hcccHHHHHHHHHHHHHhCcCcccHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHH
Confidence            555666666666666666555  222                 3555666666666666666666666666666666666


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 024531          173 RRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYK  220 (266)
Q Consensus       173 ~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~  220 (266)
                      .+|.++..+|++++|+..|++++.++|++..+...++.+....++..+
T Consensus       256 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~  303 (368)
T 1fch_A          256 KLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHRE  303 (368)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHH
Confidence            666666666666666666666666666666555555555554444433

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.45  E-value=8.3e-13  Score=107.58  Aligned_cols=135  Identities=17%  Similarity=0.140  Sum_probs=119.7

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531           82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  161 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al  161 (266)
                      .+..+...|..++..|++++|+..|.+++...|....                 ++.++|.++...|++++|+..+.+++
T Consensus        36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~-----------------~~~~la~~~~~~~~~~~A~~~~~~a~   98 (252)
T 2ho1_A           36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSAD-----------------AHAALAVVFQTEMEPKLADEEYRKAL   98 (252)
T ss_dssp             HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3788899999999999999999999999999988654                 68999999999999999999999999


Q ss_pred             cCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 024531          162 GEDENNVKALFRRGKARAELGQTDAAREDFLKAGK--FAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRP  234 (266)
Q Consensus       162 ~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~  234 (266)
                      ..+|.+..+++.+|.++..+|++++|+..|++++.  .+|.+..+...++.+....++..++.. .+.+++...+
T Consensus        99 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~~~~~~  172 (252)
T 2ho1_A           99 ASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKE-YFEKSLRLNR  172 (252)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCS
T ss_pred             HHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhcCc
Confidence            99999999999999999999999999999999999  889999999999988777666655444 4667665443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.45  E-value=1.2e-12  Score=110.28  Aligned_cols=144  Identities=14%  Similarity=0.018  Sum_probs=109.4

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHh-hCHHHHHHHHHhH
Q 024531           82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKL-KRYEEAIGQCSLV  160 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~-~~~~~A~~~~~~a  160 (266)
                      .+..+.+.|..+...|++++|+..|.+++.+.+.....           .....++.++|.+|... |++++|+.+|+++
T Consensus        76 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~-----------~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~A  144 (292)
T 1qqe_A           76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF-----------RRGANFKFELGEILENDLHDYAKAIDCYELA  144 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-----------HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH-----------HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence            36677788888888888888888888888887653221           11234688999999996 9999999999999


Q ss_pred             hcCCCCc------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-------HHHHHHHHHHHHHHHHHHHHHHHh
Q 024531          161 LGEDENN------VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKS-------IARELRLLAEHEKAVYKKQKEIYK  227 (266)
Q Consensus       161 l~l~p~~------~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~-------~~~~l~~l~~~~~~~~~~~~~~~~  227 (266)
                      +++.|.+      ..++.++|.++..+|+|++|+..|++++.+.|++..       +...+..+...+++..++. ..|.
T Consensus       145 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~-~~~~  223 (292)
T 1qqe_A          145 GEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAA-RTLQ  223 (292)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHH-HHHH
T ss_pred             HHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHH-HHHH
Confidence            9998754      467899999999999999999999999999998654       4456677766666655444 4578


Q ss_pred             cccCCCCCCc
Q 024531          228 GIFGPRPEPK  237 (266)
Q Consensus       228 k~~~~~~~~~  237 (266)
                      +.+...+...
T Consensus       224 ~al~l~p~~~  233 (292)
T 1qqe_A          224 EGQSEDPNFA  233 (292)
T ss_dssp             GGGCC-----
T ss_pred             HHHhhCCCCC
Confidence            8887766544

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.44  E-value=4.5e-12  Score=100.81  Aligned_cols=150  Identities=12%  Similarity=-0.040  Sum_probs=107.8

Q ss_pred             HHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhh--------hhc-hhHHHH---HHH-h-------hhhhhhhHHHH
Q 024531           84 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMF--------QLF-GKYRDM---ALA-V-------KNPCHLNMAAC  143 (266)
Q Consensus        84 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~--------~~~-~~~~~~---~~~-l-------~~~~~~n~a~~  143 (266)
                      ..+...|..++..|++++|+..|.+++...|.....        ... +...+-   ... +       ...++.++|.+
T Consensus        43 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~  122 (225)
T 2vq2_A           43 LAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGIC  122 (225)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHH
Confidence            345556666666666666666666666666553221        011 221111   111 1       13468899999


Q ss_pred             HHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHHHHHHH
Q 024531          144 LLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAP-EDKSIARELRLLAEHEKAVYKKQ  222 (266)
Q Consensus       144 ~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~l~~l~~~~~~~~~~~  222 (266)
                      +...|++++|+..+.+++..+|.++.+++.+|.++..+|++++|+..|++++.++| ++..+...+..+....+... +.
T Consensus       123 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~a  201 (225)
T 2vq2_A          123 SAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQ-AA  201 (225)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHH-HH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHH-HH
Confidence            99999999999999999999999999999999999999999999999999999999 99999877777755555443 44


Q ss_pred             HHHHhcccCCCC
Q 024531          223 KEIYKGIFGPRP  234 (266)
Q Consensus       223 ~~~~~k~~~~~~  234 (266)
                      ...++.+....+
T Consensus       202 ~~~~~~~~~~~p  213 (225)
T 2vq2_A          202 YEYEAQLQANFP  213 (225)
T ss_dssp             HHHHHHHHHHCT
T ss_pred             HHHHHHHHHhCC
Confidence            455555543333

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.44  E-value=1.8e-12  Score=94.75  Aligned_cols=99  Identities=17%  Similarity=0.154  Sum_probs=87.8

Q ss_pred             hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 024531          136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE  215 (266)
Q Consensus       136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  215 (266)
                      .++++|.+++..|++++|+..+++++.++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.+....
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            47789999999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHHHhcccCCCCC
Q 024531          216 KAVYKKQKEIYKGIFGPRPE  235 (266)
Q Consensus       216 ~~~~~~~~~~~~k~~~~~~~  235 (266)
                      ++..++.. .|.+++...|.
T Consensus        99 g~~~~A~~-~~~~al~~~P~  117 (121)
T 1hxi_A           99 HNANAALA-SLRAWLLSQPQ  117 (121)
T ss_dssp             HHHHHHHH-HHHHHHC----
T ss_pred             CCHHHHHH-HHHHHHHhCcC
Confidence            88766654 47777766554

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.43  E-value=7e-14  Score=99.50  Aligned_cols=95  Identities=25%  Similarity=0.329  Sum_probs=76.4

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531           82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  161 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al  161 (266)
                      .+..+...|..++..|+|++|+..|.+++...|.+..                 ++.++|.++..+|++++|+.+|++++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-----------------~~~~lg~~~~~~g~~~~A~~~~~~al   65 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPV-----------------GYSNKAMALIKLGEYTQAIQMCQQGL   65 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-----------------HHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            3566778888888888888888888888888887654                 57888888888888888888888888


Q ss_pred             cCCCCc------hHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024531          162 GEDENN------VKALFRRGKARAELGQTDAAREDFLK  193 (266)
Q Consensus       162 ~l~p~~------~~a~~~~g~~~~~~g~~~~A~~~~~~  193 (266)
                      .++|++      ..+++++|.++..+|+++.|+..+++
T Consensus        66 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           66 RYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             TSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred             HhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence            888887      78888888888888887777766543

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.43  E-value=2.5e-13  Score=100.20  Aligned_cols=99  Identities=10%  Similarity=0.046  Sum_probs=83.0

Q ss_pred             hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-------HHHHHH
Q 024531          136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK-------SIAREL  208 (266)
Q Consensus       136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~-------~~~~~l  208 (266)
                      ++.++|.++++.|+|++|+.+|++|++++|+++.+++++|.+|..+|+|++|+.+|+++++++|++.       .+...+
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l   89 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA   89 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence            6889999999999999999999999999999999999999999999999999999999999999764       355556


Q ss_pred             HHHHHHHHHHHHHHHHHHhcccCCCCC
Q 024531          209 RLLAEHEKAVYKKQKEIYKGIFGPRPE  235 (266)
Q Consensus       209 ~~l~~~~~~~~~~~~~~~~k~~~~~~~  235 (266)
                      +.+...++...++. ..|.+.+...++
T Consensus        90 g~~~~~~~~~~~A~-~~~~kal~~~~~  115 (127)
T 4gcn_A           90 GNAFQKQNDLSLAV-QWFHRSLSEFRD  115 (127)
T ss_dssp             HHHHHHTTCHHHHH-HHHHHHHHHSCC
T ss_pred             HHHHHHcCCHHHHH-HHHHHHHhhCcC
Confidence            66666666665444 447777654443

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.43  E-value=2.9e-12  Score=107.90  Aligned_cols=130  Identities=13%  Similarity=0.005  Sum_probs=101.3

Q ss_pred             HHHHHHhHHHHhhc-cHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531           84 DRRKMDGNALFKEE-KLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  162 (266)
Q Consensus        84 ~~~~~~g~~~~~~g-~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~  162 (266)
                      ..+...|..++..| ++++|+..|.+++...|....                 ++.++|.++...|++++|+..+++++.
T Consensus        91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----------------~~~~l~~~~~~~~~~~~A~~~~~~a~~  153 (330)
T 3hym_B           91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGP-----------------AWIAYGHSFAVESEHDQAMAAYFTAAQ  153 (330)
T ss_dssp             HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTH-----------------HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHH-----------------HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            34455666666666 666666666666666665433                 588899999999999999999999999


Q ss_pred             CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 024531          163 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFG  231 (266)
Q Consensus       163 l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~  231 (266)
                      ++|++..+++.+|.++..+|++++|+..|++++.++|++..+...++.+....++..++... +.+++.
T Consensus       154 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~-~~~a~~  221 (330)
T 3hym_B          154 LMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKW-FLDALE  221 (330)
T ss_dssp             HTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHH-HHHHHH
T ss_pred             hccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHH-HHHHHH
Confidence            99998889999999999999999999999999999999988888888887776666554443 555544

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.42  E-value=2.8e-12  Score=115.65  Aligned_cols=115  Identities=23%  Similarity=0.298  Sum_probs=101.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCH
Q 024531           71 RSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRY  150 (266)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~  150 (266)
                      ...++..+....+..+...|..++..|+|++|+..|++++..+|.+..                 ++.++|.|+..+|++
T Consensus        13 ~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~-----------------~~~~la~~~~~~g~~   75 (537)
T 3fp2_A           13 LKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV-----------------FYSNISACYISTGDL   75 (537)
T ss_dssp             HTTSCHHHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHHTCH
T ss_pred             hcCCCcchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcH-----------------HHHHHHHHHHHcCCH
Confidence            455678888889999999999999999999999999999999998765                 699999999999999


Q ss_pred             HHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 024531          151 EEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKS  203 (266)
Q Consensus       151 ~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~  203 (266)
                      ++|+..|++++.++|+++.+++.+|.++..+|++++|+..|+ ++.++|+...
T Consensus        76 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~  127 (537)
T 3fp2_A           76 EKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDG  127 (537)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-------
T ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCCh
Confidence            999999999999999999999999999999999999999996 8888887543

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.42  E-value=2.3e-12  Score=113.77  Aligned_cols=115  Identities=20%  Similarity=0.301  Sum_probs=105.8

Q ss_pred             HHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHH
Q 024531           79 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS  158 (266)
Q Consensus        79 ~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~  158 (266)
                      .+..+..+...|..++..|+|++|+..|.+++...|.+..                 ++.++|.++...|++++|+..++
T Consensus        22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~-----------------~~~~l~~~~~~~g~~~~A~~~~~   84 (450)
T 2y4t_A           22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYI-----------------AYYRRATVFLAMGKSKAALPDLT   84 (450)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHH-----------------HHHHHHHHHHHCCCHHHHHHHHH
Confidence            3456888999999999999999999999999999988655                 69999999999999999999999


Q ss_pred             hHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHH
Q 024531          159 LVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK---SIARELRL  210 (266)
Q Consensus       159 ~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~l~~  210 (266)
                      ++++++|++..+++.+|.+|..+|++++|+..|++++.++|++.   .+...+..
T Consensus        85 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~  139 (450)
T 2y4t_A           85 KVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIK  139 (450)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHH
T ss_pred             HHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999988   77666543

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.42  E-value=2.5e-12  Score=92.62  Aligned_cols=97  Identities=16%  Similarity=0.234  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHH
Q 024531          101 EAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAE  180 (266)
Q Consensus       101 ~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~  180 (266)
                      .|+..|.+++...|.+..                 +++++|.++...|++++|+..|++++.++|++..+++.+|.++..
T Consensus         3 ~a~~~~~~al~~~p~~~~-----------------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~   65 (115)
T 2kat_A            3 AITERLEAMLAQGTDNML-----------------LRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQG   65 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHH-----------------HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence            578999999999998765                 699999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHH
Q 024531          181 LGQTDAAREDFLKAGKFAPE--DKSIARELRLLAEH  214 (266)
Q Consensus       181 ~g~~~~A~~~~~~al~l~p~--~~~~~~~l~~l~~~  214 (266)
                      +|++++|+..|++++.++|+  +......+......
T Consensus        66 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~  101 (115)
T 2kat_A           66 QGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRR  101 (115)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence            99999999999999999985  45555555444333

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.42  E-value=1.7e-12  Score=111.43  Aligned_cols=107  Identities=14%  Similarity=0.067  Sum_probs=97.7

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  162 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~  162 (266)
                      +..+...|..++..|++++|+..|.+++...|....                 ++.++|.++...|++++|+..+++++.
T Consensus        64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~-----------------~~~~l~~~~~~~g~~~~A~~~~~~al~  126 (368)
T 1fch_A           64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHME-----------------AWQYLGTTQAENEQELLAISALRRCLE  126 (368)
T ss_dssp             CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHCcCHHHHHHHHHHHHh
Confidence            345678999999999999999999999999998655                 689999999999999999999999999


Q ss_pred             CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 024531          163 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIAR  206 (266)
Q Consensus       163 l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~  206 (266)
                      ++|+++.+++.+|.++..+|++++|+..|++++.++|++..+..
T Consensus       127 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  170 (368)
T 1fch_A          127 LKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVT  170 (368)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC
T ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHH
Confidence            99999999999999999999999999999999999998765543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.41  E-value=3.7e-12  Score=107.14  Aligned_cols=129  Identities=16%  Similarity=0.130  Sum_probs=107.8

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  162 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~  162 (266)
                      ...+...|..++..|++++|+..|.+++...|....                 ++.++|.++...|++++|+..+++++.
T Consensus       172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~~~~~~~~A~~~~~~a~~  234 (327)
T 3cv0_A          172 AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQ-----------------LWNKLGATLANGNRPQEALDAYNRALD  234 (327)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            456677888999999999999999999998887654                 588899999999999999999999999


Q ss_pred             CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 024531          163 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE------------DKSIARELRLLAEHEKAVYKKQKEIYKGI  229 (266)
Q Consensus       163 l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~------------~~~~~~~l~~l~~~~~~~~~~~~~~~~k~  229 (266)
                      .+|++..+++.+|.++..+|++++|+..|++++.++|+            +..+...+..+...+++..++.. .+++.
T Consensus       235 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~  312 (327)
T 3cv0_A          235 INPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVEL-TYAQN  312 (327)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHH-HTTCC
T ss_pred             cCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHH-HHHHH
Confidence            99999999999999999999999999999999999998            78888888888777666554433 34443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.40  E-value=1.1e-12  Score=95.97  Aligned_cols=97  Identities=11%  Similarity=-0.045  Sum_probs=88.4

Q ss_pred             hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 024531          136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE  215 (266)
Q Consensus       136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  215 (266)
                      .+.++|.+++..|+|++|+..|++++.++|+++.+++++|.++..+|+|++|+.+|+++++++|++..+...++.+...+
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~   85 (126)
T 3upv_A            6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV   85 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999999998887


Q ss_pred             HHHHHHHHHHHhcccCCC
Q 024531          216 KAVYKKQKEIYKGIFGPR  233 (266)
Q Consensus       216 ~~~~~~~~~~~~k~~~~~  233 (266)
                      ++..++... |.+.+...
T Consensus        86 ~~~~~A~~~-~~~al~~~  102 (126)
T 3upv_A           86 KEYASALET-LDAARTKD  102 (126)
T ss_dssp             TCHHHHHHH-HHHHHHHH
T ss_pred             hCHHHHHHH-HHHHHHhC
Confidence            777655444 67776554

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.40  E-value=4.1e-12  Score=106.87  Aligned_cols=149  Identities=12%  Similarity=0.029  Sum_probs=118.1

Q ss_pred             HHHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHH
Q 024531           77 EERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQ  156 (266)
Q Consensus        77 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~  156 (266)
                      ....+.+..+...|+.+...|+|++|+..|.+++.+.+....           ..-...++.++|.+|..+|++++|+.+
T Consensus        31 ~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------~~~~a~~~~~lg~~~~~~g~~~~A~~~   99 (292)
T 1qqe_A           31 YKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGN-----------EDEAGNTYVEAYKCFKSGGNSVNAVDS   99 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC-----------HHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            334555667777788999999999999999999998754211           011234799999999999999999999


Q ss_pred             HHhHhcCCCCc------hHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHHHHH
Q 024531          157 CSLVLGEDENN------VKALFRRGKARAEL-GQTDAAREDFLKAGKFAPED------KSIARELRLLAEHEKAVYKKQK  223 (266)
Q Consensus       157 ~~~al~l~p~~------~~a~~~~g~~~~~~-g~~~~A~~~~~~al~l~p~~------~~~~~~l~~l~~~~~~~~~~~~  223 (266)
                      +++++.+.|..      ..++.++|.+|..+ |++++|+.+|++++.+.|++      ..+...++.+...+++..++. 
T Consensus       100 ~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~-  178 (292)
T 1qqe_A          100 LENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEAS-  178 (292)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH-
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHH-
Confidence            99999987753      46899999999996 99999999999999998864      456777888877777776555 


Q ss_pred             HHHhcccCCCCCCc
Q 024531          224 EIYKGIFGPRPEPK  237 (266)
Q Consensus       224 ~~~~k~~~~~~~~~  237 (266)
                      ..|.++....+...
T Consensus       179 ~~~~~al~~~~~~~  192 (292)
T 1qqe_A          179 DIYSKLIKSSMGNR  192 (292)
T ss_dssp             HHHHHHHHTTSSCT
T ss_pred             HHHHHHHHHHhcCC
Confidence            45788877665543

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.39  E-value=5.1e-12  Score=96.81  Aligned_cols=117  Identities=16%  Similarity=0.044  Sum_probs=97.8

Q ss_pred             hhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024531          135 PCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEH  214 (266)
Q Consensus       135 ~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  214 (266)
                      ..+.++|.+++..|+|++|+..|++++.++|+++.+++++|.+|..+|+|++|+.+|++++.++|++..++..++.+...
T Consensus        12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   91 (164)
T 3sz7_A           12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD   91 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHHhcccCCCCCCcccchhHHHhHHHHHHHH
Q 024531          215 EKAVYKKQKEIYKGIFGPRPEPKQKKNWLIIFWQLLVSLV  254 (266)
Q Consensus       215 ~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (266)
                      +++..++.. .|.+.+...+...  .+|....+..+..-+
T Consensus        92 ~g~~~~A~~-~~~~al~~~p~~~--~~~~~~~l~~~~~~~  128 (164)
T 3sz7_A           92 MADYKGAKE-AYEKGIEAEGNGG--SDAMKRGLETTKRKI  128 (164)
T ss_dssp             TTCHHHHHH-HHHHHHHHHSSSC--CHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHH-HHHHHHHhCCCch--HHHHHHHHHHHHHHH
Confidence            877765555 4778776655443  345444444443333

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.38  E-value=5.6e-12  Score=112.77  Aligned_cols=108  Identities=21%  Similarity=0.270  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHH
Q 024531           79 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS  158 (266)
Q Consensus        79 ~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~  158 (266)
                      +.+.+..+...|+.++..|+|++|+..|++++...|+ ..                 ++.++|.++..+|++++|+..++
T Consensus         2 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~-----------------~~~~la~~~~~~g~~~~A~~~~~   63 (514)
T 2gw1_A            2 KDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED-PV-----------------FYSNLSACYVSVGDLKKVVEMST   63 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC-HH-----------------HHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-HH-----------------HHHhHHHHHHHHhhHHHHHHHHH
Confidence            3567889999999999999999999999999999985 33                 59999999999999999999999


Q ss_pred             hHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 024531          159 LVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSI  204 (266)
Q Consensus       159 ~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~  204 (266)
                      ++++++|++..+++.+|.++..+|++++|+..|++++.++|.+...
T Consensus        64 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  109 (514)
T 2gw1_A           64 KALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDAS  109 (514)
T ss_dssp             HHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGG
T ss_pred             HHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccch
Confidence            9999999999999999999999999999999999999999965433

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.38  E-value=3.5e-12  Score=104.86  Aligned_cols=132  Identities=14%  Similarity=-0.021  Sum_probs=111.1

Q ss_pred             HHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHH
Q 024531           92 ALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKAL  171 (266)
Q Consensus        92 ~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~  171 (266)
                      .....|+|++|+..|.+++...+.....             ...++.++|.++...|++++|+..+++++.++|+++.++
T Consensus        14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~   80 (275)
T 1xnf_A           14 PLQPTLQQEVILARMEQILASRALTDDE-------------RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVF   80 (275)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTSSCCCHHH-------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHH
T ss_pred             ccCccchHHHHHHHHHHHHhcccccCch-------------hHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHH
Confidence            3445689999999999999975422110             233799999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCc
Q 024531          172 FRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPK  237 (266)
Q Consensus       172 ~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~~~  237 (266)
                      +.+|.++..+|++++|+..|++++.++|++..+...++.+....++..++. ..|.+++...+...
T Consensus        81 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~a~~~~~~~~  145 (275)
T 1xnf_A           81 NYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQ-DDLLAFYQDDPNDP  145 (275)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHH-HHHHHHHHhCCCCh
Confidence            999999999999999999999999999999999999999987777765554 44777776655543

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.36  E-value=1.2e-11  Score=89.77  Aligned_cols=102  Identities=26%  Similarity=0.330  Sum_probs=94.2

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  162 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~  162 (266)
                      ...+...|..++..|++++|+..|.+++...|....                 ++.++|.++...|++++|+..+.+++.
T Consensus        35 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~~~~~~~~A~~~~~~~~~   97 (136)
T 2fo7_A           35 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE-----------------AWYNLGNAYYKQGDYDEAIEYYQKALE   97 (136)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchH-----------------HHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            345677899999999999999999999999887544                 588999999999999999999999999


Q ss_pred             CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 024531          163 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED  201 (266)
Q Consensus       163 l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~  201 (266)
                      ..|.+..+++.+|.++...|++++|...|++++.++|++
T Consensus        98 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A           98 LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred             hCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence            999999999999999999999999999999999999864

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.36  E-value=8e-12  Score=102.61  Aligned_cols=137  Identities=18%  Similarity=0.107  Sum_probs=114.4

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhh-----ccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHH
Q 024531           80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYM-----GDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAI  154 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~  154 (266)
                      +..+..+...|..++..|++++|+..|.+++...     ++.+.              ...++.++|.++...|++++|+
T Consensus        40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~g~~~~A~  105 (283)
T 3edt_B           40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPA--------------VAATLNNLAVLYGKRGKYKEAE  105 (283)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH--------------HHHHHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchH--------------HHHHHHHHHHHHHHhccHHHHH
Confidence            4457788899999999999999999999999986     22221              3447999999999999999999


Q ss_pred             HHHHhHhcC--------CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHHHHH
Q 024531          155 GQCSLVLGE--------DENNVKALFRRGKARAELGQTDAAREDFLKAGKF--------APEDKSIARELRLLAEHEKAV  218 (266)
Q Consensus       155 ~~~~~al~l--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--------~p~~~~~~~~l~~l~~~~~~~  218 (266)
                      .++.+++.+        +|....+++.+|.++..+|++++|+..|++++.+        +|....+...++.+...+++.
T Consensus       106 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  185 (283)
T 3edt_B          106 PLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKY  185 (283)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH
Confidence            999999988        5778899999999999999999999999999999        777778888888887777766


Q ss_pred             HHHHHHHHhcccC
Q 024531          219 YKKQKEIYKGIFG  231 (266)
Q Consensus       219 ~~~~~~~~~k~~~  231 (266)
                      .++... +.+++.
T Consensus       186 ~~A~~~-~~~~l~  197 (283)
T 3edt_B          186 QDAETL-YKEILT  197 (283)
T ss_dssp             HHHHHH-HHHHHH
T ss_pred             HHHHHH-HHHHHH
Confidence            554443 455443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.36  E-value=3.1e-12  Score=117.30  Aligned_cols=122  Identities=20%  Similarity=0.125  Sum_probs=92.6

Q ss_pred             hccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHH
Q 024531           96 EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRG  175 (266)
Q Consensus        96 ~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g  175 (266)
                      .|++++|+..|+++++..|.+..                 ++.++|.++...|++++|+..++++++++|++..+++.+|
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~-----------------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg   64 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFV-----------------AWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLG   64 (568)
T ss_dssp             -------------------CCHH-----------------HHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            47899999999999999998665                 6999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 024531          176 KARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPE  235 (266)
Q Consensus       176 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~  235 (266)
                      .++..+|++++|+..|+++++++|++..+...++.+....++..++.. .|.+.+...+.
T Consensus        65 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~p~  123 (568)
T 2vsy_A           65 RVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAA-AYTRAHQLLPE  123 (568)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTT
T ss_pred             HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCC
Confidence            999999999999999999999999999999999999887777765544 47777765554

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.34  E-value=4.5e-12  Score=98.44  Aligned_cols=135  Identities=11%  Similarity=0.071  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHH-HHHhhCHHHHH
Q 024531           76 VEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAAC-LLKLKRYEEAI  154 (266)
Q Consensus        76 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~-~~~~~~~~~A~  154 (266)
                      ....+.....+...|..+...|++++|+..|.+++...| +...                 +..++.+ +...+....|+
T Consensus        33 l~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~-----------------~~~~~~~~~~~~~~~~~a~   94 (176)
T 2r5s_A           33 SDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSY-----------------KSLIAKLELHQQAAESPEL   94 (176)
T ss_dssp             CHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHH-----------------HHHHHHHHHHHHHTSCHHH
T ss_pred             HHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHH-----------------HHHHHHHHHHhhcccchHH
Confidence            344556678889999999999999999999999999998 5431                 2233333 22334455689


Q ss_pred             HHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 024531          155 GQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED--KSIARELRLLAEHEKAVYKKQKEIYKGI  229 (266)
Q Consensus       155 ~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~--~~~~~~l~~l~~~~~~~~~~~~~~~~k~  229 (266)
                      ..+++++.++|+++.+++.+|.++..+|++++|+..|+++++++|+.  ..++..+..+...+++..+.... |++.
T Consensus        95 ~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~-y~~a  170 (176)
T 2r5s_A           95 KRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK-YRRQ  170 (176)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH-HHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH-HHHH
Confidence            99999999999999999999999999999999999999999999975  56888888887766655444333 4443

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.33  E-value=4.9e-12  Score=106.26  Aligned_cols=124  Identities=10%  Similarity=-0.016  Sum_probs=109.1

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  162 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~  162 (266)
                      ...+..+|..+...|++++|+..|.+++...|+...                 ...+.+..+...++...|+..+++++.
T Consensus       151 ~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~-----------------~~~~~~~~l~~~~~~~~a~~~l~~al~  213 (287)
T 3qou_A          151 GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRY-----------------QGLVAQIELLXQAADTPEIQQLQQQVA  213 (287)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHH-----------------HHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHH-----------------HHHHHHHHHHhhcccCccHHHHHHHHh
Confidence            456677899999999999999999999999996432                 466778888899999999999999999


Q ss_pred             CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHHHHHHHHHH
Q 024531          163 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED--KSIARELRLLAEHEKAVYKKQK  223 (266)
Q Consensus       163 l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~--~~~~~~l~~l~~~~~~~~~~~~  223 (266)
                      .+|+++.+++.+|.++...|++++|+..|++++.++|++  ..++..+..+...+++..+...
T Consensus       214 ~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~  276 (287)
T 3qou_A          214 ENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALAS  276 (287)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHH
Confidence            999999999999999999999999999999999999998  8899999988777665544433

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.32  E-value=7.1e-13  Score=114.06  Aligned_cols=124  Identities=14%  Similarity=0.068  Sum_probs=105.3

Q ss_pred             hccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCc--------
Q 024531           96 EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENN--------  167 (266)
Q Consensus        96 ~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~--------  167 (266)
                      .+++.+|+..|.+++...|....                 ++.++|.++++.|+|++|+..|++++.++|.+        
T Consensus       126 L~~~~~A~~~~~~a~~~~p~~a~-----------------~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~  188 (336)
T 1p5q_A          126 LKSFEKAKESWEMNSEEKLEQST-----------------IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEA  188 (336)
T ss_dssp             EEEEECCCCGGGCCHHHHHHHHH-----------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHH
T ss_pred             EeecccccchhcCCHHHHHHHHH-----------------HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHH
Confidence            45566677677776666665333                 69999999999999999999999999999998        


Q ss_pred             -------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCc
Q 024531          168 -------VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPK  237 (266)
Q Consensus       168 -------~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~~~  237 (266)
                             ..+++++|.||..+|+|++|+.+|+++++++|++..++..++.+...+++..++.. .|.+++...+...
T Consensus       189 ~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~-~~~~al~l~P~~~  264 (336)
T 1p5q_A          189 QKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARA-DFQKVLQLYPNNK  264 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCSSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHHCCCCH
Confidence                   69999999999999999999999999999999999999999999888877765544 4788887666544

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.32  E-value=2.7e-11  Score=102.07  Aligned_cols=96  Identities=18%  Similarity=0.175  Sum_probs=89.0

Q ss_pred             HhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHH
Q 024531           94 FKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFR  173 (266)
Q Consensus        94 ~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~  173 (266)
                      ...|++++|+..|+++++..|.+..                 +++++|.++.++|++++|+..+++++.++|+++.++++
T Consensus       177 ~~~~~~~eA~~~~~~~l~~~p~~~~-----------------~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~  239 (291)
T 3mkr_A          177 AGGEKLQDAYYIFQEMADKCSPTLL-----------------LLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLIN  239 (291)
T ss_dssp             HCTTHHHHHHHHHHHHHHHSCCCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hCchHHHHHHHHHHHHHHhCCCcHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            3458999999999999999998665                 69999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHH-HHHHHHHHHhhCCCCHHHHH
Q 024531          174 RGKARAELGQTDA-AREDFLKAGKFAPEDKSIAR  206 (266)
Q Consensus       174 ~g~~~~~~g~~~~-A~~~~~~al~l~p~~~~~~~  206 (266)
                      +|.++..+|++++ +..+++++++++|+++.+..
T Consensus       240 l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d  273 (291)
T 3mkr_A          240 LVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE  273 (291)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH
Confidence            9999999999986 56899999999999998875

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.32  E-value=1.3e-11  Score=111.32  Aligned_cols=154  Identities=12%  Similarity=-0.017  Sum_probs=120.4

Q ss_pred             HHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhh-h-------hchhHHH---HHH------HhhhhhhhhH
Q 024531           78 ERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMF-Q-------LFGKYRD---MAL------AVKNPCHLNM  140 (266)
Q Consensus        78 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~-~-------~~~~~~~---~~~------~l~~~~~~n~  140 (266)
                      .....+..+...|..++..|++++|+..|.+++...|. ... .       ..+...+   ...      .-...++.++
T Consensus       238 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  316 (537)
T 3fp2_A          238 LRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHR  316 (537)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHH
Confidence            34455777888999999999999999999999998887 221 0       0111111   111      1124578899


Q ss_pred             HHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 024531          141 AACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYK  220 (266)
Q Consensus       141 a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~  220 (266)
                      |.++...|++++|+..+++++.++|++..+++.+|.++..+|++++|+..|++++.++|++..+...++.+....++..+
T Consensus       317 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  396 (537)
T 3fp2_A          317 GQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDT  396 (537)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988777766655


Q ss_pred             HHHHHHhcccCCC
Q 024531          221 KQKEIYKGIFGPR  233 (266)
Q Consensus       221 ~~~~~~~k~~~~~  233 (266)
                      +.. .|.+++...
T Consensus       397 A~~-~~~~a~~~~  408 (537)
T 3fp2_A          397 AIK-QYDIAKRLE  408 (537)
T ss_dssp             HHH-HHHHHHHHH
T ss_pred             HHH-HHHHHHHcC
Confidence            444 466665443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.31  E-value=2e-11  Score=86.49  Aligned_cols=80  Identities=15%  Similarity=0.150  Sum_probs=72.3

Q ss_pred             hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHH
Q 024531          136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED------KSIARELR  209 (266)
Q Consensus       136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~~l~  209 (266)
                      ++.++|.++...|++++|+..|++++.++|+++.+++++|.++..+|++++|+.+|++++.++|++      ..+...++
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~   85 (111)
T 2l6j_A            6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLE   85 (111)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHH
Confidence            688999999999999999999999999999999999999999999999999999999999999998      66665555


Q ss_pred             HHHHHH
Q 024531          210 LLAEHE  215 (266)
Q Consensus       210 ~l~~~~  215 (266)
                      .+...+
T Consensus        86 ~~~~~~   91 (111)
T 2l6j_A           86 LAQGAV   91 (111)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            554333

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.31  E-value=9.6e-12  Score=94.77  Aligned_cols=99  Identities=18%  Similarity=0.108  Sum_probs=89.0

Q ss_pred             hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCC-------chH-----HHHHHHHHHHHcCCHHHHHHHHHHHHhh------
Q 024531          136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDEN-------NVK-----ALFRRGKARAELGQTDAAREDFLKAGKF------  197 (266)
Q Consensus       136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~-------~~~-----a~~~~g~~~~~~g~~~~A~~~~~~al~l------  197 (266)
                      .+.++|.++++.|+|++|+..|++||+++|+       +..     +|+++|.++..+|+|++|+.+|.+++++      
T Consensus        13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e   92 (159)
T 2hr2_A           13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE   92 (159)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence            5889999999999999999999999999999       444     9999999999999999999999999999      


Q ss_pred             -CCCCHHHH----HHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 024531          198 -APEDKSIA----RELRLLAEHEKAVYKKQKEIYKGIFGPRPE  235 (266)
Q Consensus       198 -~p~~~~~~----~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~  235 (266)
                       +|++..++    ..++.+...+++.+++... |++.+...|+
T Consensus        93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~-y~kAlel~p~  134 (159)
T 2hr2_A           93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPE-FKKVVEMIEE  134 (159)
T ss_dssp             TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHH-HHHHHhcCCC
Confidence             99999999    9999998888888777665 7888766443

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.30  E-value=5.4e-11  Score=108.77  Aligned_cols=132  Identities=13%  Similarity=0.023  Sum_probs=115.0

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  162 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~  162 (266)
                      ...+...|..+.+.|++++|+..|.+++...|.+..                 ++.+++.+|.+.|++++|+..+++++.
T Consensus       373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~~~g~~~~A~~~~~~~~~  435 (597)
T 2xpi_A          373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGP-----------------AWIGFAHSFAIEGEHDQAISAYTTAAR  435 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            456667788888899999999999999888877544                 588999999999999999999999999


Q ss_pred             CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 024531          163 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGP  232 (266)
Q Consensus       163 l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~  232 (266)
                      .+|++..+++.+|.+|...|++++|+..|+++++++|+++.+...+..+....++.+++. ..|.+++..
T Consensus       436 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~  504 (597)
T 2xpi_A          436 LFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAI-NHFQNALLL  504 (597)
T ss_dssp             TTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHH
T ss_pred             hCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHH-HHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999887777665544 446777654

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.30  E-value=2.4e-11  Score=82.93  Aligned_cols=78  Identities=27%  Similarity=0.331  Sum_probs=74.5

Q ss_pred             hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024531          136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAE  213 (266)
Q Consensus       136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  213 (266)
                      ++.++|.++...|++++|+..+++++.++|+++.+++.+|.++..+|++++|+..|++++.++|++..+...++.+..
T Consensus        11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~   88 (91)
T 1na3_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ   88 (91)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            688999999999999999999999999999999999999999999999999999999999999999999988887754

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.30  E-value=1.1e-11  Score=87.47  Aligned_cols=99  Identities=11%  Similarity=-0.031  Sum_probs=88.2

Q ss_pred             hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHH
Q 024531          136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE--DKSIARELRLLAE  213 (266)
Q Consensus       136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~~l~~l~~  213 (266)
                      ++.++|.++...|++++|+..+++++.++|.+..+++.+|.++..+|++++|+..|++++.++|+  +..+...++.+..
T Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~   87 (112)
T 2kck_A            8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALR   87 (112)
T ss_dssp             GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999  9999999999877


Q ss_pred             HH-HHHHHHHHHHHhcccCCCCC
Q 024531          214 HE-KAVYKKQKEIYKGIFGPRPE  235 (266)
Q Consensus       214 ~~-~~~~~~~~~~~~k~~~~~~~  235 (266)
                      .. ++..++. ..+.++....+.
T Consensus        88 ~~~~~~~~A~-~~~~~~~~~~p~  109 (112)
T 2kck_A           88 YIEGKEVEAE-IAEARAKLEHHH  109 (112)
T ss_dssp             TCSSCSHHHH-HHHHHHGGGCCC
T ss_pred             HHhCCHHHHH-HHHHHHhhcccC
Confidence            77 6665544 446777665554

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.29  E-value=1.5e-11  Score=90.66  Aligned_cols=99  Identities=11%  Similarity=-0.008  Sum_probs=89.0

Q ss_pred             hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 024531          136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE  215 (266)
Q Consensus       136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  215 (266)
                      .+.++|.+++..|+|++|+..+++++.++|+++.+++.+|.++..+|++++|+..|++++.++|++..++..++.+....
T Consensus        11 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~   90 (137)
T 3q49_B           11 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEM   90 (137)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999998877


Q ss_pred             HHHHHHHHHHHhcccCCCCC
Q 024531          216 KAVYKKQKEIYKGIFGPRPE  235 (266)
Q Consensus       216 ~~~~~~~~~~~~k~~~~~~~  235 (266)
                      ++..++.. .|.+.+...+.
T Consensus        91 ~~~~~A~~-~~~~a~~~~p~  109 (137)
T 3q49_B           91 ESYDEAIA-NLQRAYSLAKE  109 (137)
T ss_dssp             TCHHHHHH-HHHHHHHHHHH
T ss_pred             hhHHHHHH-HHHHHHHHChh
Confidence            77765544 46777655443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.29  E-value=3.6e-11  Score=90.15  Aligned_cols=131  Identities=14%  Similarity=0.001  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531           80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  159 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~  159 (266)
                      ...+..+...|..++..|++++|+..|.+++.+.+....           ......++.++|.++...|++++|+.++++
T Consensus         6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~   74 (164)
T 3ro3_A            6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-----------KAAERIAYSNLGNAYIFLGEFETASEYYKK   74 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC-----------chHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            456778899999999999999999999999998775322           122345789999999999999999999999


Q ss_pred             HhcCCCCc------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHHH
Q 024531          160 VLGEDENN------VKALFRRGKARAELGQTDAAREDFLKAGKFAPED------KSIARELRLLAEHEKAVYKK  221 (266)
Q Consensus       160 al~l~p~~------~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~~l~~l~~~~~~~~~~  221 (266)
                      ++.+.+..      ..+++.+|.++..+|++++|+..+++++.+.+..      ..+...++.+....++..++
T Consensus        75 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  148 (164)
T 3ro3_A           75 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA  148 (164)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHH
Confidence            99875542      5789999999999999999999999999875422      34555666665555555443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.29  E-value=1.7e-11  Score=103.00  Aligned_cols=126  Identities=10%  Similarity=0.037  Sum_probs=112.4

Q ss_pred             HHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHH
Q 024531           92 ALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKAL  171 (266)
Q Consensus        92 ~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~  171 (266)
                      .+...|++++|+..|.+++...|.+..                 ++.++|.++...|++++|+..+++++..+|+++.++
T Consensus       147 ~~~~~~~~~~A~~~~~~~~~~~~~~~~-----------------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  209 (327)
T 3cv0_A          147 FFAAPNEYRECRTLLHAALEMNPNDAQ-----------------LHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLW  209 (327)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHHSTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHhhCCCCHH-----------------HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence            488899999999999999999988654                 689999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 024531          172 FRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPE  235 (266)
Q Consensus       172 ~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~  235 (266)
                      +.+|.++...|++++|+..|++++.++|++..+...++.+....++..++.+ .|.+++...+.
T Consensus       210 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~a~~~~~~  272 (327)
T 3cv0_A          210 NKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAK-QLVRAIYMQVG  272 (327)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHH-HHHHHHHhCCc
Confidence            9999999999999999999999999999999999999999877777655544 46676655444

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.28  E-value=4.7e-11  Score=109.17  Aligned_cols=153  Identities=13%  Similarity=0.070  Sum_probs=119.7

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhh--------hchhHHH---HHHH------hhhhhhhhHHHHHH
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQ--------LFGKYRD---MALA------VKNPCHLNMAACLL  145 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~--------~~~~~~~---~~~~------l~~~~~~n~a~~~~  145 (266)
                      ...+...|..+...|++++|+..|.+++...|.+...-        ..+...+   ....      -...++.++|.++.
T Consensus       407 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  486 (597)
T 2xpi_A          407 GPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAF  486 (597)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            56777888888888888888888888888877643220        0111111   1111      12446889999999


Q ss_pred             HhhCHHHHHHHHHhHhcC------CCCc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 024531          146 KLKRYEEAIGQCSLVLGE------DENN-VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAV  218 (266)
Q Consensus       146 ~~~~~~~A~~~~~~al~l------~p~~-~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~  218 (266)
                      +.|++++|+..+++++++      +|++ ..+++.+|.++...|++++|+..|+++++++|+++.+...+..+....++.
T Consensus       487 ~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  566 (597)
T 2xpi_A          487 NKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIP  566 (597)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCH
T ss_pred             HhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCH
Confidence            999999999999999988      6765 789999999999999999999999999999999999999999998877776


Q ss_pred             HHHHHHHHhcccCCCCCC
Q 024531          219 YKKQKEIYKGIFGPRPEP  236 (266)
Q Consensus       219 ~~~~~~~~~k~~~~~~~~  236 (266)
                      .++. ..|++++...|+.
T Consensus       567 ~~A~-~~~~~~l~~~p~~  583 (597)
T 2xpi_A          567 GLAI-THLHESLAISPNE  583 (597)
T ss_dssp             HHHH-HHHHHHHHHCTTC
T ss_pred             HHHH-HHHHHHHhcCCCC
Confidence            5554 4578888765553

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.28  E-value=2.6e-11  Score=99.49  Aligned_cols=104  Identities=15%  Similarity=-0.065  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhcc-----chhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHH
Q 024531           80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD-----DFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAI  154 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~  154 (266)
                      ...+..+...|..++..|++++|+..|.+++.....     .+.              ...++.++|.++..+|++++|+
T Consensus        82 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--------------~~~~~~~la~~~~~~g~~~~A~  147 (283)
T 3edt_B           82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPD--------------VAKQLNNLALLCQNQGKAEEVE  147 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHHHTTTCHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChH--------------HHHHHHHHHHHHHHcCCHHHHH
Confidence            445677889999999999999999999999998521     111              3347999999999999999999


Q ss_pred             HHHHhHhcC--------CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024531          155 GQCSLVLGE--------DENNVKALFRRGKARAELGQTDAAREDFLKAGKF  197 (266)
Q Consensus       155 ~~~~~al~l--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  197 (266)
                      .++++++.+        +|....+++.+|.++..+|++++|+..|++++.+
T Consensus       148 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          148 YYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            999999998        7888899999999999999999999999999987

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.27  E-value=1.9e-11  Score=102.60  Aligned_cols=137  Identities=10%  Similarity=-0.028  Sum_probs=104.8

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  162 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~  162 (266)
                      +..+...|..++..+++++|+..|.+++...+.....           .....++.++|.+|..+|++++|+.++++++.
T Consensus       115 ~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~-----------~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~  183 (293)
T 3u3w_A          115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV-----------YQNLYIENAIANIYAENGYLKKGIDLFEQILK  183 (293)
T ss_dssp             HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCT-----------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccH-----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4445567888888888999999999988865442221           01233689999999999999999999999993


Q ss_pred             -------CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 024531          163 -------EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED------KSIARELRLLAEHEKAVYKKQKEIYKGI  229 (266)
Q Consensus       163 -------l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~~l~~l~~~~~~~~~~~~~~~~k~  229 (266)
                             ..+....+++++|.+|..+|+|++|+..+++++.+.+..      ..+...++.+...+++..++....|++.
T Consensus       184 ~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A  263 (293)
T 3u3w_A          184 QLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA  263 (293)
T ss_dssp             HHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence                   333456789999999999999999999999999987654      6788888888877774333444445555


Q ss_pred             c
Q 024531          230 F  230 (266)
Q Consensus       230 ~  230 (266)
                      +
T Consensus       264 l  264 (293)
T 3u3w_A          264 S  264 (293)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.27  E-value=4.8e-11  Score=103.73  Aligned_cols=140  Identities=16%  Similarity=0.095  Sum_probs=104.3

Q ss_pred             HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhH
Q 024531           81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  160 (266)
Q Consensus        81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~a  160 (266)
                      ..+..+...|..++..|+++.|+..|.+|+.+.+.....          ......++.++|.+|..+|++++|+.+++++
T Consensus       141 ~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~----------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  210 (383)
T 3ulq_A          141 EKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY----------NIRLLQCHSLFATNFLDLKQYEDAISHFQKA  210 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc----------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            456677777888888888888888888888776653221          1113447889999999999999999999999


Q ss_pred             hcCCCCc------hHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024531          161 LGEDENN------VKALFRRGKARAELGQTDAAREDFLKAGK-----FA-PEDKSIARELRLLAEHEKAVYKKQKEIYKG  228 (266)
Q Consensus       161 l~l~p~~------~~a~~~~g~~~~~~g~~~~A~~~~~~al~-----l~-p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k  228 (266)
                      +.+.|..      ..+++++|.+|..+|++++|+.+|++++.     .+ |....+...++.+...+++..++.. .+.+
T Consensus       211 l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~  289 (383)
T 3ulq_A          211 YSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHE-YHSK  289 (383)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHH-HHHH
T ss_pred             HHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHH-HHHH
Confidence            9775433      25888999999999999999999999999     46 7777888888888776666554443 3555


Q ss_pred             ccC
Q 024531          229 IFG  231 (266)
Q Consensus       229 ~~~  231 (266)
                      .+.
T Consensus       290 al~  292 (383)
T 3ulq_A          290 GMA  292 (383)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.27  E-value=6.3e-11  Score=105.31  Aligned_cols=125  Identities=14%  Similarity=0.014  Sum_probs=94.9

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  162 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~  162 (266)
                      +..+..+|.+++..|+|++|+..|++|+++.+.......        ..-...++.|+|.+|..+|++++|+.++++++.
T Consensus        51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~--------~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~  122 (472)
T 4g1t_A           51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQA--------EIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKH  122 (472)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGC--------TTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCcccc--------chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            456778999999999999999999999998654211100        000233578899999999999999999998886


Q ss_pred             C--------CCCchHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 024531          163 E--------DENNVKALFRRGKARAEL--GQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE  215 (266)
Q Consensus       163 l--------~p~~~~a~~~~g~~~~~~--g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  215 (266)
                      +        .+..+.++..+|.++...  ++|++|+.+|+++++++|+++++...+..+...+
T Consensus       123 i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l  185 (472)
T 4g1t_A          123 VCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRL  185 (472)
T ss_dssp             HHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            5        334567888888777665  4688999999999999999988887777664443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.25  E-value=4.7e-11  Score=84.00  Aligned_cols=75  Identities=21%  Similarity=0.228  Sum_probs=67.5

Q ss_pred             hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHH
Q 024531          136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE--DKSIARELRL  210 (266)
Q Consensus       136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~~l~~  210 (266)
                      +++++|.++...|++++|+..++++++++|+++.+++.+|.+|..+|++++|+..|++++++.|.  +......+..
T Consensus         9 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~~   85 (100)
T 3ma5_A            9 TRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQD   85 (100)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999875  4444444443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.25  E-value=1.2e-11  Score=94.55  Aligned_cols=101  Identities=15%  Similarity=0.103  Sum_probs=90.6

Q ss_pred             hhhhhHHHHHHHhhCHHHHHHHHHhHhcC------------------CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024531          135 PCHLNMAACLLKLKRYEEAIGQCSLVLGE------------------DENNVKALFRRGKARAELGQTDAAREDFLKAGK  196 (266)
Q Consensus       135 ~~~~n~a~~~~~~~~~~~A~~~~~~al~l------------------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~  196 (266)
                      ..+.++|..+++.|+|++|+..|.+++.+                  +|.+..+++++|.||..+|+|++|+.++++++.
T Consensus        12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~   91 (162)
T 3rkv_A           12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK   91 (162)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence            36889999999999999999999999999                  788889999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 024531          197 FAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEP  236 (266)
Q Consensus       197 l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~~  236 (266)
                      ++|++..++..++.+...+++..++... |.+.+...|..
T Consensus        92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~-~~~al~l~p~~  130 (162)
T 3rkv_A           92 REETNEKALFRRAKARIAAWKLDEAEED-LKLLLRNHPAA  130 (162)
T ss_dssp             HSTTCHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHHCGGG
T ss_pred             cCCcchHHHHHHHHHHHHHhcHHHHHHH-HHHHHhcCCCC
Confidence            9999999999999998888887766554 78887765543

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.24  E-value=3.7e-11  Score=101.73  Aligned_cols=141  Identities=13%  Similarity=0.035  Sum_probs=92.1

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531           82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  161 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al  161 (266)
                      .+..+...|..+...|+|++|+..|.+++.+.+.....           .....++.++|.+|.. |++++|+.+|++++
T Consensus        75 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~-----------~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al  142 (307)
T 2ifu_A           75 AAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTP-----------DTAAMALDRAGKLMEP-LDLSKAVHLYQQAA  142 (307)
T ss_dssp             HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCH-----------HHHHHHHHHHHHHHTT-TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCH-----------HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Confidence            35566667777777777777777777777765432110           0123467788888887 88888888888888


Q ss_pred             cCCCCc------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 024531          162 GEDENN------VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK------SIARELRLLAEHEKAVYKKQKEIYKGI  229 (266)
Q Consensus       162 ~l~p~~------~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~------~~~~~l~~l~~~~~~~~~~~~~~~~k~  229 (266)
                      .+.|..      ..++.++|.+|..+|+|++|+..|++++.+.|++.      .+...+..+...+++..++ ...|.+.
T Consensus       143 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A-~~~~~~a  221 (307)
T 2ifu_A          143 AVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA-QKCVRES  221 (307)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH-HHHHHHH
T ss_pred             HHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHH-HHHHHHH
Confidence            776543      46788888888888888888888888888766432      2333344444333444433 3446666


Q ss_pred             cCCCCCC
Q 024531          230 FGPRPEP  236 (266)
Q Consensus       230 ~~~~~~~  236 (266)
                      + ..+..
T Consensus       222 l-~~p~~  227 (307)
T 2ifu_A          222 Y-SIPGF  227 (307)
T ss_dssp             T-TSTTS
T ss_pred             h-CCCCC
Confidence            6 54443

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.24  E-value=2.8e-11  Score=108.19  Aligned_cols=99  Identities=12%  Similarity=0.114  Sum_probs=76.3

Q ss_pred             hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchH------HHHHHHHHHHH---cCCHHHHHHHHHHHHhhCCCCHHHHH
Q 024531          136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVK------ALFRRGKARAE---LGQTDAAREDFLKAGKFAPEDKSIAR  206 (266)
Q Consensus       136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~------a~~~~g~~~~~---~g~~~~A~~~~~~al~l~p~~~~~~~  206 (266)
                      ++.++|.++...|++++|+..+++++.++|.+..      +++.+|.++..   +|++++|+..|++++.++|++..+..
T Consensus       374 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  453 (514)
T 2gw1_A          374 VPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKI  453 (514)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence            5778888888888888888888888888877754      88888888888   88888888888888888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 024531          207 ELRLLAEHEKAVYKKQKEIYKGIFGPRPE  235 (266)
Q Consensus       207 ~l~~l~~~~~~~~~~~~~~~~k~~~~~~~  235 (266)
                      .++.+....++..++. ..|.+++...+.
T Consensus       454 ~la~~~~~~g~~~~A~-~~~~~a~~~~~~  481 (514)
T 2gw1_A          454 GLAQMKLQQEDIDEAI-TLFEESADLART  481 (514)
T ss_dssp             HHHHHHHHTTCHHHHH-HHHHHHHHHCSS
T ss_pred             HHHHHHHHhcCHHHHH-HHHHHHHHhccc
Confidence            8888776666655443 346776655443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.24  E-value=7.8e-11  Score=80.34  Aligned_cols=84  Identities=27%  Similarity=0.354  Sum_probs=77.8

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531           82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  161 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al  161 (266)
                      .+..+...|..++..|++++|+..|.+++...|.+..                 ++.++|.++...|++++|+..+++++
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----------------~~~~l~~~~~~~~~~~~A~~~~~~a~   70 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE-----------------AWYNLGNAYYKQGDYDEAIEYYQKAL   70 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH-----------------HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            4667889999999999999999999999999988654                 58999999999999999999999999


Q ss_pred             cCCCCchHHHHHHHHHHHHcC
Q 024531          162 GEDENNVKALFRRGKARAELG  182 (266)
Q Consensus       162 ~l~p~~~~a~~~~g~~~~~~g  182 (266)
                      .++|++..+++.+|.++..+|
T Consensus        71 ~~~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           71 ELDPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHC
T ss_pred             hcCCCCHHHHHHHHHHHHhcC
Confidence            999999999999999998765

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.24  E-value=1e-11  Score=86.69  Aligned_cols=69  Identities=19%  Similarity=0.263  Sum_probs=52.8

Q ss_pred             hhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 024531          137 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVK-ALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIA  205 (266)
Q Consensus       137 ~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~-a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~  205 (266)
                      .+++|.++...|++++|+..+++++..+|+++. +++.+|.++..+|++++|+..|++++.++|++..+.
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   72 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ   72 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence            346777777777777777777777777777777 777777777777777777777777777777777665

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.24  E-value=9.6e-11  Score=102.15  Aligned_cols=125  Identities=12%  Similarity=0.058  Sum_probs=109.9

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531           80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  159 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~  159 (266)
                      ...+..+...|..++..|+|++|+..|.+++...|.+...             ...++.++|.+|...|++++|+.++++
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------~~~~~~~lg~~~~~~g~~~~A~~~~~~  111 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRT-------------LSAIYSQLGNAYFYLGDYNKAMQYHKH  111 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHH-------------HHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhH-------------HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            4567788899999999999999999999999998876431             334789999999999999999999999


Q ss_pred             HhcC------CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHHHH
Q 024531          160 VLGE------DENNVKALFRRGKARAELGQTDAAREDFLKAGKF------APEDKSIARELRLLAEHEKA  217 (266)
Q Consensus       160 al~l------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l------~p~~~~~~~~l~~l~~~~~~  217 (266)
                      ++.+      +|....+++.+|.+|..+|++++|+..|++++.+      .|....+...++.+....++
T Consensus       112 al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  181 (411)
T 4a1s_A          112 DLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK  181 (411)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence            9988      6778899999999999999999999999999999      55566788888888777777

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.22  E-value=8.1e-11  Score=102.22  Aligned_cols=144  Identities=13%  Similarity=0.058  Sum_probs=103.3

Q ss_pred             HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhH
Q 024531           81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  160 (266)
Q Consensus        81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~a  160 (266)
                      ..+..+...|..++..|+++.|+..|.+|+.+.+.....          ......++.++|.+|..+|++++|+.++.++
T Consensus       139 ~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~----------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~a  208 (378)
T 3q15_A          139 EKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLY----------SIRTIQSLFVIAGNYDDFKHYDKALPHLEAA  208 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTC----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCc----------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            345555666666666666666666666666665542210          1113457889999999999999999999999


Q ss_pred             hcCCC------CchHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 024531          161 LGEDE------NNVKALFRRGKARAELGQTDAAREDFLKAGK-----FAPEDKSIARELRLLAEHEKAVYKKQKEIYKGI  229 (266)
Q Consensus       161 l~l~p------~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~-----l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~  229 (266)
                      +.+.+      ....+++++|.+|..+|++++|+.+|++++.     .+|....+...++.+...+++..++.. .+.+.
T Consensus       209 l~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~a  287 (378)
T 3q15_A          209 LELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQ-FIEEG  287 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHH-HHHHH
Confidence            97633      2346888999999999999999999999999     778778888888888777776655444 46666


Q ss_pred             cCCCCC
Q 024531          230 FGPRPE  235 (266)
Q Consensus       230 ~~~~~~  235 (266)
                      +...+.
T Consensus       288 l~~~~~  293 (378)
T 3q15_A          288 LDHITA  293 (378)
T ss_dssp             HHHCCT
T ss_pred             HHHHHH
Confidence            654443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.22  E-value=1.3e-10  Score=82.53  Aligned_cols=99  Identities=16%  Similarity=0.051  Sum_probs=89.0

Q ss_pred             hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 024531          136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE  215 (266)
Q Consensus       136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  215 (266)
                      .+.++|.++...|++++|+..+++++..+|.++.+++.+|.++..+|++++|+..+++++.++|++..+...++.+....
T Consensus         6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~   85 (118)
T 1elw_A            6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL   85 (118)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999999988777


Q ss_pred             HHHHHHHHHHHhcccCCCCC
Q 024531          216 KAVYKKQKEIYKGIFGPRPE  235 (266)
Q Consensus       216 ~~~~~~~~~~~~k~~~~~~~  235 (266)
                      ++..++. ..|.+.+...+.
T Consensus        86 ~~~~~A~-~~~~~~~~~~~~  104 (118)
T 1elw_A           86 NRFEEAK-RTYEEGLKHEAN  104 (118)
T ss_dssp             TCHHHHH-HHHHHHHTTCTT
T ss_pred             hhHHHHH-HHHHHHHHcCCC
Confidence            7665554 457787766554

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.22  E-value=1.3e-10  Score=97.58  Aligned_cols=97  Identities=12%  Similarity=-0.027  Sum_probs=77.9

Q ss_pred             hhhhhhHHHHHHHhhCHHHHHHHHHhHh---cCCCCc----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------
Q 024531          134 NPCHLNMAACLLKLKRYEEAIGQCSLVL---GEDENN----VKALFRRGKARAELGQTDAAREDFLKAGKFAPE------  200 (266)
Q Consensus       134 ~~~~~n~a~~~~~~~~~~~A~~~~~~al---~l~p~~----~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~------  200 (266)
                      ..++.++|.+|...|++++|+.++++++   ...|++    ..+++++|.+|..+|+|++|+.+|++++.+.++      
T Consensus       155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~  234 (293)
T 2qfc_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL  234 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence            3478999999999999999999999999   445553    268999999999999999999999999998653      


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 024531          201 DKSIARELRLLAEHEKAVYKKQKEIYKGIF  230 (266)
Q Consensus       201 ~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~  230 (266)
                      -..+...++.+...+++..++....|.+.+
T Consensus       235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          235 IGQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            167778888887777766655344455543

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.21  E-value=6.3e-11  Score=86.34  Aligned_cols=99  Identities=20%  Similarity=0.118  Sum_probs=87.4

Q ss_pred             hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCch---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHH
Q 024531          136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNV---KALFRRGKARAELGQTDAAREDFLKAGKFAPED---KSIARELR  209 (266)
Q Consensus       136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~---~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~l~  209 (266)
                      +++++|.+++..|++++|+..+++++..+|+++   .+++.+|.++..+|+|++|+..|++++..+|++   +.+...++
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la   83 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG   83 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence            578999999999999999999999999999998   899999999999999999999999999999999   88899999


Q ss_pred             HHHHHHHHHHHHHHHHHhcccCCCCC
Q 024531          210 LLAEHEKAVYKKQKEIYKGIFGPRPE  235 (266)
Q Consensus       210 ~l~~~~~~~~~~~~~~~~k~~~~~~~  235 (266)
                      .+...+++..++.. .|.+++...|.
T Consensus        84 ~~~~~~g~~~~A~~-~~~~~~~~~p~  108 (129)
T 2xev_A           84 LSQYGEGKNTEAQQ-TLQQVATQYPG  108 (129)
T ss_dssp             HHHHHTTCHHHHHH-HHHHHHHHSTT
T ss_pred             HHHHHcCCHHHHHH-HHHHHHHHCCC
Confidence            98877777655544 47777765443

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.21  E-value=7.9e-11  Score=98.21  Aligned_cols=104  Identities=17%  Similarity=-0.021  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhh-----ccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHH
Q 024531           80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYM-----GDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAI  154 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~  154 (266)
                      ...+..+...|..++..|++++|+..|.+++...     ++...              ...++.++|.++...|++++|+
T Consensus       108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~--------------~~~~~~~la~~~~~~~~~~~A~  173 (311)
T 3nf1_A          108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPD--------------VAKQLNNLALLCQNQGKYEEVE  173 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHHHTTTCHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChH--------------HHHHHHHHHHHHHHcCCHHHHH
Confidence            3456677889999999999999999999999986     22121              3347899999999999999999


Q ss_pred             HHHHhHhcC--------CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024531          155 GQCSLVLGE--------DENNVKALFRRGKARAELGQTDAAREDFLKAGKF  197 (266)
Q Consensus       155 ~~~~~al~l--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  197 (266)
                      .++++++.+        +|....+++.+|.++..+|++++|+..|++++.+
T Consensus       174 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  224 (311)
T 3nf1_A          174 YYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR  224 (311)
T ss_dssp             HHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            999999988        7778889999999999999999999999999985

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.21  E-value=2.1e-11  Score=96.28  Aligned_cols=101  Identities=10%  Similarity=-0.090  Sum_probs=89.7

Q ss_pred             hhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCch----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024531          135 PCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNV----------------KALFRRGKARAELGQTDAAREDFLKAGKFA  198 (266)
Q Consensus       135 ~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~----------------~a~~~~g~~~~~~g~~~~A~~~~~~al~l~  198 (266)
                      ..+.++|.+++..|+|++|+..|.+++.+.|.++                .+++++|.++..+|+|++|+.+|++++.++
T Consensus        39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  118 (198)
T 2fbn_A           39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID  118 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            3688999999999999999999999999999887                899999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 024531          199 PEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEP  236 (266)
Q Consensus       199 p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~~  236 (266)
                      |++..+...++.+...+++..++.. .|.+.+...+..
T Consensus       119 p~~~~~~~~lg~~~~~~~~~~~A~~-~~~~al~~~p~~  155 (198)
T 2fbn_A          119 KNNVKALYKLGVANMYFGFLEEAKE-NLYKAASLNPNN  155 (198)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHSTTC
T ss_pred             cccHHHHHHHHHHHHHcccHHHHHH-HHHHHHHHCCCc
Confidence            9999999999999887777765544 477777665543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.21  E-value=1.9e-10  Score=99.98  Aligned_cols=109  Identities=17%  Similarity=0.206  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531           80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  159 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~  159 (266)
                      ...+..+...|..+...|+|++|+..|.+++.+.+....           ......++.|+|.+|..+|++++|+.++++
T Consensus       181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~  249 (383)
T 3ulq_A          181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ-----------PQLMGRTLYNIGLCKNSQSQYEDAIPYFKR  249 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC-----------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            345677889999999999999999999999999875432           122445799999999999999999999999


Q ss_pred             Hhc-----CC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 024531          160 VLG-----ED-ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAP  199 (266)
Q Consensus       160 al~-----l~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p  199 (266)
                      ++.     .+ |..+.+++++|.++..+|++++|...|++++.+.+
T Consensus       250 al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  295 (383)
T 3ulq_A          250 AIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ  295 (383)
T ss_dssp             HHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            999     56 88899999999999999999999999999999854

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.20  E-value=3.2e-10  Score=98.48  Aligned_cols=109  Identities=14%  Similarity=-0.016  Sum_probs=95.8

Q ss_pred             HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhH
Q 024531           81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  160 (266)
Q Consensus        81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~a  160 (266)
                      ..+..+...|..+...|+|++|+..|.+++.+.+....           ......++.|+|.+|..+|++++|+.+++++
T Consensus       180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~a  248 (378)
T 3q15_A          180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN-----------DRFIAISLLNIANSYDRSGDDQMAVEHFQKA  248 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            45777889999999999999999999999998754221           1124457999999999999999999999999


Q ss_pred             hc-----CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 024531          161 LG-----EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE  200 (266)
Q Consensus       161 l~-----l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~  200 (266)
                      +.     .+|....+++.+|.++..+|++++|+..+++++.+.+.
T Consensus       249 l~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          249 AKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             HHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            99     88989999999999999999999999999999999653

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.19  E-value=1e-10  Score=85.21  Aligned_cols=100  Identities=13%  Similarity=0.063  Sum_probs=88.8

Q ss_pred             hhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024531          134 NPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAE  213 (266)
Q Consensus       134 ~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  213 (266)
                      ..++.++|.++...|++++|+..+++++..+|.+..+++.+|.++..+|++++|+..|++++.++|++..+...++.+..
T Consensus        16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~   95 (133)
T 2lni_A           16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE   95 (133)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            34689999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             HHHHHHHHHHHHHhcccCCCC
Q 024531          214 HEKAVYKKQKEIYKGIFGPRP  234 (266)
Q Consensus       214 ~~~~~~~~~~~~~~k~~~~~~  234 (266)
                      ..++..++.+ .|.+.+...+
T Consensus        96 ~~~~~~~A~~-~~~~~~~~~p  115 (133)
T 2lni_A           96 AMKDYTKAMD-VYQKALDLDS  115 (133)
T ss_dssp             HTTCHHHHHH-HHHHHHHHCG
T ss_pred             HHhhHHHHHH-HHHHHHHhCC
Confidence            7777665544 4677665433

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.19  E-value=1.8e-10  Score=96.00  Aligned_cols=141  Identities=16%  Similarity=0.089  Sum_probs=112.2

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531           80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  159 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~  159 (266)
                      ...+..+...|..++..|++++|+..|.+++..........         ......++.++|.++...|++++|+.++.+
T Consensus        66 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  136 (311)
T 3nf1_A           66 PDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD---------HPAVAATLNNLAVLYGKRGKYKEAEPLCKR  136 (311)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC---------ChHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence            44566778899999999999999999999999852210000         001334789999999999999999999999


Q ss_pred             HhcCC--------CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHHHHHHHHHH
Q 024531          160 VLGED--------ENNVKALFRRGKARAELGQTDAAREDFLKAGKF--------APEDKSIARELRLLAEHEKAVYKKQK  223 (266)
Q Consensus       160 al~l~--------p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--------~p~~~~~~~~l~~l~~~~~~~~~~~~  223 (266)
                      ++.+.        |....+++.+|.++..+|++++|+..|++++.+        +|....+...++.+....++..++..
T Consensus       137 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  216 (311)
T 3nf1_A          137 ALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAET  216 (311)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            99874        667789999999999999999999999999998        67777788888888777776655544


Q ss_pred             HHHhccc
Q 024531          224 EIYKGIF  230 (266)
Q Consensus       224 ~~~~k~~  230 (266)
                      . +.+++
T Consensus       217 ~-~~~al  222 (311)
T 3nf1_A          217 L-YKEIL  222 (311)
T ss_dssp             H-HHHHH
T ss_pred             H-HHHHH
Confidence            3 45554

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.19  E-value=4.6e-10  Score=101.13  Aligned_cols=143  Identities=13%  Similarity=0.018  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHH
Q 024531           78 ERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQC  157 (266)
Q Consensus        78 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~  157 (266)
                      .....+....+.+..+..+|+|++|+..|.++++........+         ......++.|+|.+|..+|+|++|+.++
T Consensus       304 ~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~---------Hp~~a~~~~nLa~~y~~~g~~~eA~~~~  374 (490)
T 3n71_A          304 EMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADT---------NLYVLRLLSIASEVLSYLQAYEEASHYA  374 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTT---------SHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC---------CHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            3345566667778888899999999999999998764311100         0013447999999999999999999999


Q ss_pred             HhHhcC--------CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHHH---HHHHHHHHHHHHHHH
Q 024531          158 SLVLGE--------DENNVKALFRRGKARAELGQTDAAREDFLKAGKF-----APEDKSIAR---ELRLLAEHEKAVYKK  221 (266)
Q Consensus       158 ~~al~l--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l-----~p~~~~~~~---~l~~l~~~~~~~~~~  221 (266)
                      .++|.+        .|+-...+.++|.+|..+|+|++|+..|++|+.+     .|+++.+..   .|..+...++.+.++
T Consensus       375 ~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~a  454 (490)
T 3n71_A          375 RRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQN  454 (490)
T ss_dssp             HHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            999955        3444578999999999999999999999999985     677776665   444444445555444


Q ss_pred             HHHHHhccc
Q 024531          222 QKEIYKGIF  230 (266)
Q Consensus       222 ~~~~~~k~~  230 (266)
                      +.. |+++-
T Consensus       455 e~~-~~~~~  462 (490)
T 3n71_A          455 EFM-YHKMR  462 (490)
T ss_dssp             HHH-HHHHH
T ss_pred             HHH-HHHHH
Confidence            443 55553

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.18  E-value=1.7e-10  Score=80.31  Aligned_cols=59  Identities=12%  Similarity=0.018  Sum_probs=47.9

Q ss_pred             hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 024531          136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK  202 (266)
Q Consensus       136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~  202 (266)
                      ++.++|.++..+|++++|+.+|++++.++|++..++++        +.+.+|+..|+++...+|++.
T Consensus        37 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~~~a~~~~~~~~~~~p~~~   95 (99)
T 2kc7_A           37 AYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMVMDILNFYNKDMYNQLEHH   95 (99)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHHHHHHHHHCCTTHHHHCCS
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHHHHHHHHHHHHhccCcccc
Confidence            78888888888888888888888888888888887754        667778888888888777653

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=99.18  E-value=2.2e-10  Score=86.26  Aligned_cols=102  Identities=15%  Similarity=0.116  Sum_probs=87.3

Q ss_pred             ccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhh---CHHHHHHHHHhHhcCC-C-CchHHH
Q 024531           97 EKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK---RYEEAIGQCSLVLGED-E-NNVKAL  171 (266)
Q Consensus        97 g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~---~~~~A~~~~~~al~l~-p-~~~~a~  171 (266)
                      .....+.+.|.+.+...+.+..                 +.+++|.|+.+.+   +..+++..++.+++.+ | ++.+++
T Consensus        12 ~~l~~~~~~y~~e~~~~~~~~~-----------------~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~l   74 (152)
T 1pc2_A           12 EDLLKFEKKFQSEKAAGSVSKS-----------------TQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYV   74 (152)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCHH-----------------HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCCCcHH-----------------HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHH
Confidence            3456677788888776665443                 6899999999988   6779999999999998 7 678999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 024531          172 FRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE  215 (266)
Q Consensus       172 ~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  215 (266)
                      |.+|.+++++|+|++|.++++++|+++|+|..+......+....
T Consensus        75 Y~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~  118 (152)
T 1pc2_A           75 FYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM  118 (152)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998777665444

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.17  E-value=5e-10  Score=94.63  Aligned_cols=133  Identities=7%  Similarity=-0.097  Sum_probs=108.0

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  162 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~  162 (266)
                      ...+...|..+...|++++|...|++++...|.+...                ++.++|.++.+.|++++|+..|+++++
T Consensus        99 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~----------------~~~~~~~~~~~~~~~~~A~~~~~~a~~  162 (308)
T 2ond_A           99 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTL----------------VYIQYMKFARRAEGIKSGRMIFKKARE  162 (308)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHH----------------HHHHHHHHHHHHHCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccH----------------HHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            4566778888899999999999999999998875431                588899999999999999999999999


Q ss_pred             CCCCchHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 024531          163 EDENNVKALFRRGKARAE-LGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGP  232 (266)
Q Consensus       163 l~p~~~~a~~~~g~~~~~-~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~  232 (266)
                      .+|.+..++...+..... +|++++|...|++++.++|+++.+...+..+...+++.. ..+..|.+.+..
T Consensus       163 ~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~-~A~~~~~~al~~  232 (308)
T 2ond_A          163 DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDN-NTRVLFERVLTS  232 (308)
T ss_dssp             STTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHH-HHHHHHHHHHHS
T ss_pred             cCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH-HHHHHHHHHHhc
Confidence            999888887766655433 799999999999999999999999888887765555554 445667887764

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.17  E-value=2.7e-10  Score=95.44  Aligned_cols=123  Identities=15%  Similarity=0.093  Sum_probs=104.1

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531           82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  161 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al  161 (266)
                      .+..+...|..++..|++++|+..|.+++...|.+...             ...++.++|.++...|++++|+..+++++
T Consensus         4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al   70 (338)
T 3ro2_A            4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKT-------------LSAIYSQLGNAYFYLHDYAKALEYHHHDL   70 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHH-------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHH-------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            35577889999999999999999999999998876431             34478999999999999999999999998


Q ss_pred             cC------CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHH
Q 024531          162 GE------DENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED------KSIARELRLLAEHEKA  217 (266)
Q Consensus       162 ~l------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~~l~~l~~~~~~  217 (266)
                      .+      .|....+++.+|.++..+|++++|+..+++++.+.|..      ..+...++.+....++
T Consensus        71 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~  138 (338)
T 3ro2_A           71 TLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK  138 (338)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence            87      55667899999999999999999999999999987643      2366677777666666

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.16  E-value=1.7e-10  Score=97.56  Aligned_cols=109  Identities=15%  Similarity=0.048  Sum_probs=92.5

Q ss_pred             HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhH
Q 024531           81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  160 (266)
Q Consensus        81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~a  160 (266)
                      ..+..+...|..+.. |++++|+..|++++.+.+....           ......++.++|.+|..+|+|++|+.+|+++
T Consensus       114 ~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~-----------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  181 (307)
T 2ifu_A          114 TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEER-----------LRQAAELIGKASRLLVRQQKFDEAAASLQKE  181 (307)
T ss_dssp             HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCC-----------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            346778889999998 9999999999999999875322           1113447999999999999999999999999


Q ss_pred             hcCCCCc------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 024531          161 LGEDENN------VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK  202 (266)
Q Consensus       161 l~l~p~~------~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~  202 (266)
                      +.+.|.+      ..+++.+|.++..+|++++|+.+|++++ ++|+..
T Consensus       182 l~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~  228 (307)
T 2ifu_A          182 KSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS  228 (307)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred             HHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence            9986644      3478899999999999999999999999 999754

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana}

Probab=99.16  E-value=5.6e-11  Score=92.84  Aligned_cols=82  Identities=85%  Similarity=1.325  Sum_probs=59.3

Q ss_pred             ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeeccccccCCCCCCCCHHHHHH
Q 024531            2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIG   81 (266)
Q Consensus         2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~   81 (266)
                      +||.+..+|+||+.+|..|+.||++.|.|.|.++||..|.+.++.||+++++.|.|+|.++....+....|+|+.++++.
T Consensus        98 ~lG~g~~vi~G~eeaL~gMk~Ge~~~v~iPp~~aYG~~g~~~~~~Ip~~s~l~F~VeL~~v~~~~e~~~~~~mt~eErl~  177 (180)
T 2f4e_A           98 VLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIG  177 (180)
T ss_dssp             ETTSCCGGGHHHHHHHTTCCBTCEEEEEECGGGTTTTTCBSSSSCBCTTCCEEEEEEEEEESCBCCC-------------
T ss_pred             EeCCCCchhHHHHHHHhCCCCCCEEEEEECchHhCCcCCcccCCCcCCCCeEEEEEEEEEEecCccccccccCCHHHHHh
Confidence            46765359999999999999999999999999999998864456799999999999999998877666689999998877


Q ss_pred             HH
Q 024531           82 AA   83 (266)
Q Consensus        82 ~~   83 (266)
                      .+
T Consensus       178 ~A  179 (180)
T 2f4e_A          178 AA  179 (180)
T ss_dssp             --
T ss_pred             hc
Confidence            65

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.16  E-value=1.7e-10  Score=96.84  Aligned_cols=107  Identities=16%  Similarity=0.140  Sum_probs=89.5

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531           82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  161 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al  161 (266)
                      .+..+...|..++..|+|++|+..|.+++.........          ......+++|+|.+|..+|+|++|+.++++++
T Consensus       154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~----------~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al  223 (293)
T 3u3w_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN----------EEFDVKVRYNHAKALYLDSRYEESLYQVNKAI  223 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCC----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc----------hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            35568899999999999999999999999765432110          22245579999999999999999999999999


Q ss_pred             cCCCCc------hHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhC
Q 024531          162 GEDENN------VKALFRRGKARAELG-QTDAAREDFLKAGKFA  198 (266)
Q Consensus       162 ~l~p~~------~~a~~~~g~~~~~~g-~~~~A~~~~~~al~l~  198 (266)
                      .+.+..      ..+++++|.++..+| ++++|+.+|++|+.+.
T Consensus       224 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          224 EISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            886543      789999999999999 5799999999999864

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.15  E-value=3.7e-11  Score=100.65  Aligned_cols=131  Identities=13%  Similarity=0.162  Sum_probs=107.7

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531           82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  161 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al  161 (266)
                      ....+..+|..++..|+|++|+..|.+++.+.|++..                 +++++|.+|..+|++++|+.++.+++
T Consensus        37 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-----------------~~~~lg~~~~~~g~~~~A~~~~~~al   99 (281)
T 2c2l_A           37 VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK-----------------AHFFLGQCQLEMESYDEAIANLQRAY   99 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3567788999999999999999999999999998655                 69999999999999999999999999


Q ss_pred             cCCCCch-------H------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024531          162 GEDENNV-------K------------------------ALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRL  210 (266)
Q Consensus       162 ~l~p~~~-------~------------------------a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~  210 (266)
                      .++|++.       .                        ....++.  ...|++++|++.|+++++++|++......+..
T Consensus       100 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~--l~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  177 (281)
T 2c2l_A          100 SLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTR--LIAAERERELEECQRNHEGHEDDGHIRAQQAC  177 (281)
T ss_dssp             HHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHH--HHHHHHHHHHTTTSGGGTTTSCHHHHTHHHHH
T ss_pred             HhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH--HHHHHHHHHHHHHHhhhccccchhhhhhHHHH
Confidence            9988652       1                        1111222  23689999999999999999999988888888


Q ss_pred             HHHHHHHHHHHHHHHHhcccC
Q 024531          211 LAEHEKAVYKKQKEIYKGIFG  231 (266)
Q Consensus       211 l~~~~~~~~~~~~~~~~k~~~  231 (266)
                      +.....+..+....+|.++..
T Consensus       178 ~~~~~~~~~~~a~~~f~~a~~  198 (281)
T 2c2l_A          178 IEAKHDKYMADMDELFSQVDE  198 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHHHHHHHHHHHhhhc
Confidence            777765656667777877655

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.15  E-value=1.9e-10  Score=97.23  Aligned_cols=137  Identities=15%  Similarity=0.065  Sum_probs=107.2

Q ss_pred             HHHHHHHHHhHHHHh-------hccH-------HHHHHHHHHHHh-hhccchhhhhchhHHHHHHHhhhhhhhhHHHHHH
Q 024531           81 GAADRRKMDGNALFK-------EEKL-------EEAMQQYEMAIA-YMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLL  145 (266)
Q Consensus        81 ~~~~~~~~~g~~~~~-------~g~~-------~~A~~~y~~al~-~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~  145 (266)
                      ..+..+...|..+..       .|++       ++|+..|.+|+. +.|+...                 ++.++|..+.
T Consensus        48 ~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~-----------------~~~~~~~~~~  110 (308)
T 2ond_A           48 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNML-----------------LYFAYADYEE  110 (308)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHH-----------------HHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHH-----------------HHHHHHHHHH
Confidence            345556666666653       4775       999999999999 6887654                 6999999999


Q ss_pred             HhhCHHHHHHHHHhHhcCCCCchH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 024531          146 KLKRYEEAIGQCSLVLGEDENNVK-ALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKE  224 (266)
Q Consensus       146 ~~~~~~~A~~~~~~al~l~p~~~~-a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~  224 (266)
                      ..|++++|...|+++++++|.++. +|..+|.++..+|++++|...|+++++++|.+..+......+........+....
T Consensus       111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~  190 (308)
T 2ond_A          111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK  190 (308)
T ss_dssp             HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999999999999999987 9999999999999999999999999999999877765444432211122334455


Q ss_pred             HHhcccCCCC
Q 024531          225 IYKGIFGPRP  234 (266)
Q Consensus       225 ~~~k~~~~~~  234 (266)
                      .|.+.+...+
T Consensus       191 ~~~~al~~~p  200 (308)
T 2ond_A          191 IFELGLKKYG  200 (308)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHhCC
Confidence            6777665433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.15  E-value=1.1e-09  Score=100.68  Aligned_cols=147  Identities=14%  Similarity=0.075  Sum_probs=122.5

Q ss_pred             HHHHHHHHHHhHHHHhhcc----------HHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhh-
Q 024531           80 IGAADRRKMDGNALFKEEK----------LEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK-  148 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~----------~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~-  148 (266)
                      ++....+..+|..+...|+          +++|+..|.+++..+|....                 ++++++.++.+++ 
T Consensus        60 P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~-----------------aW~hR~w~l~~l~~  122 (567)
T 1dce_A           60 PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG-----------------TWHHRCWLLSRLPE  122 (567)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHTCSS
T ss_pred             chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHccc
Confidence            3445667788888888888          99999999999999999766                 6999999999999 


Q ss_pred             -CHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH-----------
Q 024531          149 -RYEEAIGQCSLVLGEDENNVKALFRRGKARAELG-QTDAAREDFLKAGKFAPEDKSIARELRLLAEHE-----------  215 (266)
Q Consensus       149 -~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g-~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~-----------  215 (266)
                       +|++|+.+|++++++||.|..||..++.++..+| .++++++++.++++.+|+|..++.....+...+           
T Consensus       123 ~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~  202 (567)
T 1dce_A          123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR  202 (567)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred             ccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence             7899999999999999999999999999999999 999999999999999999999999999887664           


Q ss_pred             --HHHHHHHHHHHhcccCCCCCCcccchhHHH
Q 024531          216 --KAVYKKQKEIYKGIFGPRPEPKQKKNWLII  245 (266)
Q Consensus       216 --~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~  245 (266)
                        ....+++-.++.+++...  |...++|.-.
T Consensus       203 ~~~~~~~eel~~~~~ai~~~--P~~~saW~y~  232 (567)
T 1dce_A          203 LPENVLLKELELVQNAFFTD--PNDQSAWFYH  232 (567)
T ss_dssp             SCHHHHHHHHHHHHHHHHHC--SSCSHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHhhC--CCCccHHHHH
Confidence              122344445566665433  3445677533

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.14  E-value=3.4e-10  Score=85.73  Aligned_cols=102  Identities=16%  Similarity=-0.015  Sum_probs=90.4

Q ss_pred             hhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024531          134 NPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAE  213 (266)
Q Consensus       134 ~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  213 (266)
                      ...+.++|.++...|++++|+..+.+++..+|.+..+++.+|.++..+|++++|+..|++++.++|++..+...++.+..
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~   92 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            34688999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCC
Q 024531          214 HEKAVYKKQKEIYKGIFGPRPEP  236 (266)
Q Consensus       214 ~~~~~~~~~~~~~~k~~~~~~~~  236 (266)
                      .+++..++.. .|.+++...+..
T Consensus        93 ~~~~~~~A~~-~~~~a~~~~p~~  114 (166)
T 1a17_A           93 ALGKFRAALR-DYETVVKVKPHD  114 (166)
T ss_dssp             HTTCHHHHHH-HHHHHHHHSTTC
T ss_pred             HhccHHHHHH-HHHHHHHhCCCC
Confidence            7777665544 477777655543

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.14  E-value=2.7e-10  Score=98.51  Aligned_cols=122  Identities=16%  Similarity=0.091  Sum_probs=104.8

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  162 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~  162 (266)
                      +..+...|..++..|+|++|+..|++++...|.+...             ...++.++|.++...|++++|+.++++++.
T Consensus         9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~   75 (406)
T 3sf4_A            9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKT-------------LSAIYSQLGNAYFYLHDYAKALEYHHHDLT   75 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHH-------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHH-------------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            5677889999999999999999999999998876431             344789999999999999999999999987


Q ss_pred             C------CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHH
Q 024531          163 E------DENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED------KSIARELRLLAEHEKA  217 (266)
Q Consensus       163 l------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~~l~~l~~~~~~  217 (266)
                      +      .|....+++.+|.++..+|++++|+..|++++.+.|..      ..+...++.+....++
T Consensus        76 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  142 (406)
T 3sf4_A           76 LARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK  142 (406)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence            7      45567899999999999999999999999999998753      3477777777766666

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.13  E-value=4.5e-10  Score=97.13  Aligned_cols=140  Identities=13%  Similarity=-0.005  Sum_probs=111.8

Q ss_pred             HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhH
Q 024531           81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  160 (266)
Q Consensus        81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~a  160 (266)
                      ..+..+...|..++..|++++|+..|.+++.+.+....           ......++.++|.++...|++++|+.+++++
T Consensus       185 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  253 (406)
T 3sf4_A          185 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-----------KAAERRAYSNLGNAYIFLGEFETASEYYKKT  253 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCC-----------cHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            34556788899999999999999999999999876432           1123447899999999999999999999999


Q ss_pred             hcCCCCc------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024531          161 LGEDENN------VKALFRRGKARAELGQTDAAREDFLKAGKFAPED------KSIARELRLLAEHEKAVYKKQKEIYKG  228 (266)
Q Consensus       161 l~l~p~~------~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~~l~~l~~~~~~~~~~~~~~~~k  228 (266)
                      +.+.|..      ..+++.+|.++..+|++++|+..|++++.+.+..      ..+...++.+....++..++.. .|.+
T Consensus       254 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~  332 (406)
T 3sf4_A          254 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH-FAEK  332 (406)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH-HHHH
T ss_pred             HHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH-HHHH
Confidence            9887655      6789999999999999999999999999986643      5667777777766666554443 4566


Q ss_pred             ccCC
Q 024531          229 IFGP  232 (266)
Q Consensus       229 ~~~~  232 (266)
                      .+..
T Consensus       333 al~~  336 (406)
T 3sf4_A          333 HLEI  336 (406)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.13  E-value=3.4e-10  Score=100.56  Aligned_cols=36  Identities=11%  Similarity=0.260  Sum_probs=31.8

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchh
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFM  118 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~  118 (266)
                      ...+...|..+...|++++|+..|.+++...|++..
T Consensus       247 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~  282 (472)
T 4g1t_A          247 TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAY  282 (472)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHH
Confidence            455678899999999999999999999999998654

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.13  E-value=4e-09  Score=88.34  Aligned_cols=140  Identities=13%  Similarity=-0.001  Sum_probs=110.3

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531           80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  159 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~  159 (266)
                      +.....+...+..++..|+|++|+..|.+++...+.....           ......++++|.++...|++++|+.++++
T Consensus        72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  140 (293)
T 2qfc_A           72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEF-----------QQFLQWQYYVAAYVLKKVDYEYCILELKK  140 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHH-----------HHHHHHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhH-----------HHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            4556677889999999999999999999999987653221           11233467799999999999999999999


Q ss_pred             HhcCCCCc------hHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCCH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 024531          160 VLGEDENN------VKALFRRGKARAELGQTDAAREDFLKAG---KFAPEDK----SIARELRLLAEHEKAVYKKQKEIY  226 (266)
Q Consensus       160 al~l~p~~------~~a~~~~g~~~~~~g~~~~A~~~~~~al---~l~p~~~----~~~~~l~~l~~~~~~~~~~~~~~~  226 (266)
                      ++.+.+..      ..+++.+|.+|..+|+|++|+..|++++   ...|++.    .+...++.+...+++..++... |
T Consensus       141 al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~-~  219 (293)
T 2qfc_A          141 LLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQ-V  219 (293)
T ss_dssp             HHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH-H
T ss_pred             HHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHH-H
Confidence            99875543      5689999999999999999999999999   5566643    5777888887777777655544 5


Q ss_pred             hcccC
Q 024531          227 KGIFG  231 (266)
Q Consensus       227 ~k~~~  231 (266)
                      .+.+.
T Consensus       220 ~kal~  224 (293)
T 2qfc_A          220 NKAIE  224 (293)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55543

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.13  E-value=4.9e-10  Score=83.12  Aligned_cols=99  Identities=16%  Similarity=0.046  Sum_probs=88.2

Q ss_pred             hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024531          136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENN---VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLA  212 (266)
Q Consensus       136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  212 (266)
                      .+..+|.++...|++++|+..+++++.++|++   ..+++.+|.++..+|++++|+..|++++.++|++..+...++.+.
T Consensus        30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~  109 (148)
T 2dba_A           30 QLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQAL  109 (148)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHH
Confidence            58899999999999999999999999999998   899999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHhcccCCCCC
Q 024531          213 EHEKAVYKKQKEIYKGIFGPRPE  235 (266)
Q Consensus       213 ~~~~~~~~~~~~~~~k~~~~~~~  235 (266)
                      ...++..++. ..|.+.+...+.
T Consensus       110 ~~~~~~~~A~-~~~~~al~~~p~  131 (148)
T 2dba_A          110 EKLGRLDQAV-LDLQRCVSLEPK  131 (148)
T ss_dssp             HHHTCHHHHH-HHHHHHHHHCSS
T ss_pred             HHcCCHHHHH-HHHHHHHHcCCC
Confidence            7777766554 446777655443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.13  E-value=4e-10  Score=88.36  Aligned_cols=138  Identities=14%  Similarity=0.095  Sum_probs=105.8

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531           82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  161 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al  161 (266)
                      .+..+...|..++..|++++|+..|.+++.+......           ......++.++|.++...|++++|+.++.+++
T Consensus        25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al   93 (203)
T 3gw4_A           25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD-----------HTAEHRALHQVGMVERMAGNWDAARRCFLEER   93 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC-----------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4677889999999999999999999999997654221           11134479999999999999999999999999


Q ss_pred             cC---CC----CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCH----HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024531          162 GE---DE----NNVKALFRRGKARAELGQTDAAREDFLKAGKFAP--EDK----SIARELRLLAEHEKAVYKKQKEIYKG  228 (266)
Q Consensus       162 ~l---~p----~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p--~~~----~~~~~l~~l~~~~~~~~~~~~~~~~k  228 (266)
                      .+   .+    ....+++++|.++..+|++++|+..+++++.+.+  ++.    .+...++.+....++..++.. .+.+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~  172 (203)
T 3gw4_A           94 ELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQ-HWLR  172 (203)
T ss_dssp             HHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHH
T ss_pred             HHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHH-HHHH
Confidence            88   33    3456799999999999999999999999998743  222    234566666666665554433 3555


Q ss_pred             ccC
Q 024531          229 IFG  231 (266)
Q Consensus       229 ~~~  231 (266)
                      .+.
T Consensus       173 al~  175 (203)
T 3gw4_A          173 ARD  175 (203)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.12  E-value=1.8e-09  Score=89.17  Aligned_cols=128  Identities=15%  Similarity=0.031  Sum_probs=69.1

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhh------hh----chhHHHHH-------HHhhhhhhhhHHHHHH
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMF------QL----FGKYRDMA-------LAVKNPCHLNMAACLL  145 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~------~~----~~~~~~~~-------~~l~~~~~~n~a~~~~  145 (266)
                      +..+...|..++..|++++|+..|.++++..+.....      ..    .+...+-.       ..-...++.++|.+|.
T Consensus         6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~   85 (273)
T 1ouv_A            6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYY   85 (273)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            4455666666666677777777777666622111000      00    00000000       0001224566666666


Q ss_pred             H----hhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024531          146 K----LKRYEEAIGQCSLVLGEDENNVKALFRRGKARAE----LGQTDAAREDFLKAGKFAPEDKSIARELRLLAEH  214 (266)
Q Consensus       146 ~----~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  214 (266)
                      .    .+++++|+..+++++..+  ++.+++.+|.+|..    .+++++|+.+|+++++++  +..+...++.+...
T Consensus        86 ~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~  158 (273)
T 1ouv_A           86 SGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDA  158 (273)
T ss_dssp             HTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred             CCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHc
Confidence            6    666666666666666653  56666666666666    666666666666666654  35555556655444

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.12  E-value=5.8e-10  Score=80.52  Aligned_cols=100  Identities=16%  Similarity=0.130  Sum_probs=88.7

Q ss_pred             hhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024531          134 NPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAE  213 (266)
Q Consensus       134 ~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  213 (266)
                      ..++..+|.++...|++++|+..+++++..+|+++.+++.+|.++..+|++++|+..+++++.++|++..+...++.+..
T Consensus        12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (131)
T 2vyi_A           12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS   91 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence            34688999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             HHHHHHHHHHHHHhcccCCCC
Q 024531          214 HEKAVYKKQKEIYKGIFGPRP  234 (266)
Q Consensus       214 ~~~~~~~~~~~~~~k~~~~~~  234 (266)
                      ..++..++.. .|.+.+...+
T Consensus        92 ~~~~~~~A~~-~~~~~~~~~p  111 (131)
T 2vyi_A           92 SLNKHVEAVA-YYKKALELDP  111 (131)
T ss_dssp             HTTCHHHHHH-HHHHHHHHST
T ss_pred             HhCCHHHHHH-HHHHHHhcCc
Confidence            7777655544 4677765544

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.11  E-value=4.3e-10  Score=94.16  Aligned_cols=141  Identities=13%  Similarity=-0.005  Sum_probs=111.3

Q ss_pred             HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhH
Q 024531           81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  160 (266)
Q Consensus        81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~a  160 (266)
                      ..+..+...|..++..|++++|+..|.+++...+....           ......++.++|.++...|++++|+..++++
T Consensus       181 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  249 (338)
T 3ro2_A          181 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-----------KAAERRAYSNLGNAYIFLGEFETASEYYKKT  249 (338)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC-----------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC-----------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            34556778899999999999999999999998765322           1123447899999999999999999999999


Q ss_pred             hcCCCCc------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024531          161 LGEDENN------VKALFRRGKARAELGQTDAAREDFLKAGKFAPED------KSIARELRLLAEHEKAVYKKQKEIYKG  228 (266)
Q Consensus       161 l~l~p~~------~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~~l~~l~~~~~~~~~~~~~~~~k  228 (266)
                      +.+.|..      ..+++.+|.++..+|++++|+..|++++.+.|..      ..+...++.+....++..++.. .|.+
T Consensus       250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~  328 (338)
T 3ro2_A          250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH-FAEK  328 (338)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH-HHHH
T ss_pred             HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH-HHHH
Confidence            9886654      6789999999999999999999999999987643      4466677777766666654444 4666


Q ss_pred             ccCCC
Q 024531          229 IFGPR  233 (266)
Q Consensus       229 ~~~~~  233 (266)
                      .+...
T Consensus       329 a~~~~  333 (338)
T 3ro2_A          329 HLEIS  333 (338)
T ss_dssp             HHHC-
T ss_pred             HHHHH
Confidence            65443

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.11  E-value=9.1e-11  Score=100.94  Aligned_cols=103  Identities=10%  Similarity=-0.013  Sum_probs=57.7

Q ss_pred             HHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCC
Q 024531           85 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED  164 (266)
Q Consensus        85 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~  164 (266)
                      .+..+|..++..|+|++|+..|.+++.++|.+..                 +++++|.+|..+|++++|+.+|+++++++
T Consensus       232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~-----------------a~~~lg~a~~~~g~~~~A~~~l~~al~l~  294 (338)
T 2if4_A          232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPK-----------------ALFRRGKAKAELGQMDSARDDFRKAQKYA  294 (338)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHTTTCHHHHHHHHHHTTC--
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            6788999999999999999999999999998655                 69999999999999999999999999999


Q ss_pred             CCchHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 024531          165 ENNVKALFRRGKA-RAELGQTDAAREDFLKAGKFAPEDKSI  204 (266)
Q Consensus       165 p~~~~a~~~~g~~-~~~~g~~~~A~~~~~~al~l~p~~~~~  204 (266)
                      |++..++..++.+ ....+..+++...|.+++..+|+++..
T Consensus       295 p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~~  335 (338)
T 2if4_A          295 PDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGAK  335 (338)
T ss_dssp             -----------------------------------------
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCC
Confidence            9999999999998 455677889999999999999987653

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.10  E-value=8.4e-10  Score=78.95  Aligned_cols=100  Identities=24%  Similarity=0.259  Sum_probs=87.8

Q ss_pred             hhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024531          135 PCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEH  214 (266)
Q Consensus       135 ~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  214 (266)
                      .++.++|.++...|++++|+..+.+++..+|.+..+++.+|.++...|++++|+..|++++.++|++..+...+..+...
T Consensus        10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~   89 (125)
T 1na0_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK   89 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence            36889999999999999999999999999999999999999999999999999999999999999999999999988777


Q ss_pred             HHHHHHHHHHHHhcccCCCCC
Q 024531          215 EKAVYKKQKEIYKGIFGPRPE  235 (266)
Q Consensus       215 ~~~~~~~~~~~~~k~~~~~~~  235 (266)
                      .++..++. ..|.+++...+.
T Consensus        90 ~~~~~~A~-~~~~~~~~~~~~  109 (125)
T 1na0_A           90 QGDYDEAI-EYYQKALELDPN  109 (125)
T ss_dssp             TTCHHHHH-HHHHHHHHHCTT
T ss_pred             hcCHHHHH-HHHHHHHHhCCC
Confidence            66665544 446777655443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.09  E-value=7.9e-10  Score=82.66  Aligned_cols=107  Identities=21%  Similarity=0.140  Sum_probs=90.3

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  162 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~  162 (266)
                      +..+...|..++..|++++|+..|.+++.+.+....           ......++.++|.++...|++++|+.++++++.
T Consensus        49 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  117 (164)
T 3ro3_A           49 RIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD-----------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA  117 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC-----------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            457788999999999999999999999998765322           112344789999999999999999999999997


Q ss_pred             CCC------CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 024531          163 EDE------NNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE  200 (266)
Q Consensus       163 l~p------~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~  200 (266)
                      +.+      ....+++.+|.++..+|++++|...+++++.+...
T Consensus       118 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          118 IAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            632      23578999999999999999999999999987654

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.07  E-value=1e-10  Score=105.31  Aligned_cols=103  Identities=14%  Similarity=0.014  Sum_probs=90.9

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531           82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  161 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al  161 (266)
                      .+..+..+|..++..|+|++|+..|++++++.|....                 +++++|.+|..+|++++|+..+++++
T Consensus        39 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~-----------------~~~~lg~~~~~~g~~~eA~~~~~~al  101 (477)
T 1wao_1           39 NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIK-----------------GYYRRAASNMALGKFRAALRDYETVV  101 (477)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHH-----------------HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3667788999999999999999999999999998655                 69999999999999999999999999


Q ss_pred             cCCCCchHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHhhCCCC
Q 024531          162 GEDENNVKALFRRGKA--RAELGQTDAAREDFL-----------KAGKFAPED  201 (266)
Q Consensus       162 ~l~p~~~~a~~~~g~~--~~~~g~~~~A~~~~~-----------~al~l~p~~  201 (266)
                      +++|++..++..++.+  +..+|++++|++.++           +++.++|+.
T Consensus       102 ~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~  154 (477)
T 1wao_1          102 KVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY  154 (477)
T ss_dssp             HHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence            9999999999999999  899999999999999           888888864

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.07  E-value=1e-10  Score=84.39  Aligned_cols=90  Identities=10%  Similarity=0.057  Sum_probs=75.3

Q ss_pred             HhhCHHHHHHHHHhHhcC---CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 024531          146 KLKRYEEAIGQCSLVLGE---DENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQ  222 (266)
Q Consensus       146 ~~~~~~~A~~~~~~al~l---~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~  222 (266)
                      .+|++++|+..|++++++   +|+++.+++.+|.++..+|+|++|+..|+++++++|+++.+...++.+....++..++.
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            468899999999999999   69999999999999999999999999999999999999999999999988888776665


Q ss_pred             HHHHhcccCCCCCC
Q 024531          223 KEIYKGIFGPRPEP  236 (266)
Q Consensus       223 ~~~~~k~~~~~~~~  236 (266)
                      .. +.+.+...+..
T Consensus        82 ~~-~~~al~~~p~~   94 (117)
T 3k9i_A           82 EL-LLKIIAETSDD   94 (117)
T ss_dssp             HH-HHHHHHHHCCC
T ss_pred             HH-HHHHHHhCCCc
Confidence            54 67776654443

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.06  E-value=1.8e-09  Score=89.94  Aligned_cols=109  Identities=16%  Similarity=0.084  Sum_probs=78.4

Q ss_pred             HHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCC
Q 024531           85 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED  164 (266)
Q Consensus        85 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~  164 (266)
                      ..+..|..+++.++|++|+..|..++...+..               ....+++++|.++..+|++++|+..|++++...
T Consensus       137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~---------------~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~  201 (282)
T 4f3v_A          137 VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKF---------------LAGAAGVAHGVAAANLALFTEAERRLTEANDSP  201 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHH---------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTST
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcc---------------cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC
Confidence            56777777888888888888877665542110               012257788888888888888888888887544


Q ss_pred             --CC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024531          165 --EN-NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELR  209 (266)
Q Consensus       165 --p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~  209 (266)
                        |. .+.+++++|.|+..+|+.++|...|++++..+|+ +.+...|.
T Consensus       202 ~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~  248 (282)
T 4f3v_A          202 AGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK  248 (282)
T ss_dssp             TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred             CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence              54 6678888888888888888888888888888887 76665553

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.04  E-value=5.2e-10  Score=80.87  Aligned_cols=98  Identities=14%  Similarity=0.086  Sum_probs=86.8

Q ss_pred             hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------HHHHHHH
Q 024531          136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED-------KSIAREL  208 (266)
Q Consensus       136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~-------~~~~~~l  208 (266)
                      ++.++|.++...|++++|+..+.+++..+|.++.+++.+|.++..+|++++|+..|++++.++|++       ..+...+
T Consensus         6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l   85 (131)
T 1elr_A            6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence            588999999999999999999999999999999999999999999999999999999999999887       8888888


Q ss_pred             HHHHHHHHHHHHHHHHHHhcccCCCC
Q 024531          209 RLLAEHEKAVYKKQKEIYKGIFGPRP  234 (266)
Q Consensus       209 ~~l~~~~~~~~~~~~~~~~k~~~~~~  234 (266)
                      +.+....++..++. ..|.+++...+
T Consensus        86 a~~~~~~~~~~~A~-~~~~~~~~~~~  110 (131)
T 1elr_A           86 GNSYFKEEKYKDAI-HFYNKSLAEHR  110 (131)
T ss_dssp             HHHHHHTTCHHHHH-HHHHHHHHHCC
T ss_pred             HHHHHHhccHHHHH-HHHHHHHHhCC
Confidence            88877777665554 44777776544

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.04  E-value=5.2e-10  Score=85.02  Aligned_cols=93  Identities=13%  Similarity=0.129  Sum_probs=81.7

Q ss_pred             HHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024531          145 LKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQT----------DAAREDFLKAGKFAPEDKSIARELRLLAEH  214 (266)
Q Consensus       145 ~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~----------~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  214 (266)
                      .+.+.|++|+..++++++++|+++.+++++|.++..++++          ++|+..|++|++++|++.+++..++.++..
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            4677899999999999999999999999999999999876          599999999999999999999999999877


Q ss_pred             HH----------HHHHHHHHHHhcccCCCCCCc
Q 024531          215 EK----------AVYKKQKEIYKGIFGPRPEPK  237 (266)
Q Consensus       215 ~~----------~~~~~~~~~~~k~~~~~~~~~  237 (266)
                      +.          ...++....|++.+...|...
T Consensus        93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~  125 (158)
T 1zu2_A           93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT  125 (158)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             hcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence            65          345566667999998777643

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.03  E-value=1e-09  Score=95.54  Aligned_cols=140  Identities=16%  Similarity=0.071  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHhHHHHhhcc-----------------HHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHH
Q 024531           80 IGAADRRKMDGNALFKEEK-----------------LEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAA  142 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~-----------------~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~  142 (266)
                      ...+..+...|..+...|+                 +++|+..|.+++.+.+....           ......++.++|.
T Consensus       163 ~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~~~la~  231 (411)
T 4a1s_A          163 LSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGD-----------RGAQGRACGNLGN  231 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTC-----------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHH
Confidence            3446677889999999999                 99999999999987654211           1113446888999


Q ss_pred             HHHHhhCHHHHHHHHHhHhcCCCCchH------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHH
Q 024531          143 CLLKLKRYEEAIGQCSLVLGEDENNVK------ALFRRGKARAELGQTDAAREDFLKAGKFAPED------KSIARELRL  210 (266)
Q Consensus       143 ~~~~~~~~~~A~~~~~~al~l~p~~~~------a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~~l~~  210 (266)
                      ++...|++++|+.++++++.+.|....      +++.+|.++..+|++++|+..|++++.+.|..      ..+...++.
T Consensus       232 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~  311 (411)
T 4a1s_A          232 TYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGN  311 (411)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999999999999999888765444      88889999999999999999999999887754      556666777


Q ss_pred             HHHHHHHHHHHHHHHHhcccC
Q 024531          211 LAEHEKAVYKKQKEIYKGIFG  231 (266)
Q Consensus       211 l~~~~~~~~~~~~~~~~k~~~  231 (266)
                      +...+++..++.. .+.+.+.
T Consensus       312 ~~~~~g~~~~A~~-~~~~al~  331 (411)
T 4a1s_A          312 TYTLLHEFNTAIE-YHNRHLA  331 (411)
T ss_dssp             HHHHTTCHHHHHH-HHHHHHH
T ss_pred             HHHHcCCHHHHHH-HHHHHHH
Confidence            7665555544433 3555543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.03  E-value=5.8e-09  Score=95.79  Aligned_cols=147  Identities=9%  Similarity=-0.014  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHHHhHHHHhhccH-HHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhC-------
Q 024531           78 ERIGAADRRKMDGNALFKEEKL-EEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR-------  149 (266)
Q Consensus        78 ~~~~~~~~~~~~g~~~~~~g~~-~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~-------  149 (266)
                      .+++.............+.|++ ++|+..|.++|..+|+...                 ++++++.++..+++       
T Consensus        23 ~k~~~y~~~~~~~~~~~~~~~~~eeal~~~~~~l~~nP~~~t-----------------aW~~R~~~l~~l~~~~~~~~~   85 (567)
T 1dce_A           23 QKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFAT-----------------LWNCRREVLQHLETEKSPEES   85 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHHHTTSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHH-----------------HHHHHHHHHHhcccccchhhh
Confidence            3344344444444455556655 5789999999999999665                 69999999999998       


Q ss_pred             ---HHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 024531          150 ---YEEAIGQCSLVLGEDENNVKALFRRGKARAELG--QTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKE  224 (266)
Q Consensus       150 ---~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g--~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~  224 (266)
                         +++|+..+++++..+|.+..+|+.++.++..++  +|++|++++.++++++|.|-.++.....+....+...+++-.
T Consensus        86 ~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~  165 (567)
T 1dce_A           86 AALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELA  165 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHH
Confidence               999999999999999999999999999999999  779999999999999999999999988887666633345556


Q ss_pred             HHhcccCCCCCCcccchhH
Q 024531          225 IYKGIFGPRPEPKQKKNWL  243 (266)
Q Consensus       225 ~~~k~~~~~~~~~~~~~~~  243 (266)
                      .+.++....+.  ..++|.
T Consensus       166 ~~~~~I~~~p~--n~saW~  182 (567)
T 1dce_A          166 FTDSLITRNFS--NYSSWH  182 (567)
T ss_dssp             HHHTTTTTTCC--CHHHHH
T ss_pred             HHHHHHHHCCC--CccHHH
Confidence            67777764443  335653

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.02  E-value=9.4e-09  Score=84.73  Aligned_cols=94  Identities=10%  Similarity=0.018  Sum_probs=79.3

Q ss_pred             hhhhhhHHHHHHH----hhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHH
Q 024531          134 NPCHLNMAACLLK----LKRYEEAIGQCSLVLGEDENNVKALFRRGKARAE----LGQTDAAREDFLKAGKFAPEDKSIA  205 (266)
Q Consensus       134 ~~~~~n~a~~~~~----~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~  205 (266)
                      ..++.++|.+|..    .+++++|+.+++++++.+  ++.+++++|.+|..    .+++++|+.+|+++++.+  ++.+.
T Consensus       110 ~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~  185 (273)
T 1ouv_A          110 AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK--DSPGC  185 (273)
T ss_dssp             HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred             ccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHH
Confidence            3478999999999    999999999999999986  68899999999999    999999999999999874  57888


Q ss_pred             HHHHHHHHH----HHHHHHHHHHHHhcccCC
Q 024531          206 RELRLLAEH----EKAVYKKQKEIYKGIFGP  232 (266)
Q Consensus       206 ~~l~~l~~~----~~~~~~~~~~~~~k~~~~  232 (266)
                      ..++.+...    .+...++. ..|++....
T Consensus       186 ~~lg~~~~~g~~~~~~~~~A~-~~~~~a~~~  215 (273)
T 1ouv_A          186 FNAGNMYHHGEGATKNFKEAL-ARYSKACEL  215 (273)
T ss_dssp             HHHHHHHHHTCSSCCCHHHHH-HHHHHHHHT
T ss_pred             HHHHHHHHcCCCCCccHHHHH-HHHHHHHhC
Confidence            889988776    55555444 457777654

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.01  E-value=1.7e-09  Score=86.48  Aligned_cols=110  Identities=9%  Similarity=-0.028  Sum_probs=69.0

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhh----CHHHHHHHH
Q 024531           82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK----RYEEAIGQC  157 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~----~~~~A~~~~  157 (266)
                      .+..+..+|..++..+++++|+..|.++++....  .                 +++++|.+|.. +    ++++|+..+
T Consensus        17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~--~-----------------a~~~lg~~y~~-~g~~~~~~~A~~~~   76 (212)
T 3rjv_A           17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDG--D-----------------ALALLAQLKIR-NPQQADYPQARQLA   76 (212)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCH--H-----------------HHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCH--H-----------------HHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence            3667788999999999999999999999876422  1                 35555555555 4    555555555


Q ss_pred             HhHhcCCCCchHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHH
Q 024531          158 SLVLGEDENNVKALFRRGKARAE----LGQTDAAREDFLKAGKFAP--EDKSIARELRLLAE  213 (266)
Q Consensus       158 ~~al~l~p~~~~a~~~~g~~~~~----~g~~~~A~~~~~~al~l~p--~~~~~~~~l~~l~~  213 (266)
                      ++++.  +.++.+++++|.+|..    .+++++|+.+|+++.+..|  +++.+...|..+..
T Consensus        77 ~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~  136 (212)
T 3rjv_A           77 EKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYA  136 (212)
T ss_dssp             HHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHH
Confidence            55533  3455555555555555    5555555555555555555  23555555555543

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.01  E-value=3.5e-09  Score=84.64  Aligned_cols=111  Identities=15%  Similarity=0.060  Sum_probs=96.0

Q ss_pred             HHHHHHHhHHHHhhc----cHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHH----hhCHHHHH
Q 024531           83 ADRRKMDGNALFKEE----KLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLK----LKRYEEAI  154 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g----~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~----~~~~~~A~  154 (266)
                      +..+..+|..+.. +    ++++|+..|.++++..  ...                 +++++|.+|..    .+++.+|+
T Consensus        50 ~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g--~~~-----------------a~~~Lg~~y~~g~g~~~d~~~A~  109 (212)
T 3rjv_A           50 GDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG--SKS-----------------GEIVLARVLVNRQAGATDVAHAI  109 (212)
T ss_dssp             HHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT--CHH-----------------HHHHHHHHHTCGGGSSCCHHHHH
T ss_pred             HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC--CHH-----------------HHHHHHHHHHcCCCCccCHHHHH
Confidence            4567788998888 7    9999999999997643  222                 68999999998    88999999


Q ss_pred             HHHHhHhcCCC--CchHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024531          155 GQCSLVLGEDE--NNVKALFRRGKARAE----LGQTDAAREDFLKAGKFAPEDKSIARELRLLAEH  214 (266)
Q Consensus       155 ~~~~~al~l~p--~~~~a~~~~g~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  214 (266)
                      ..++++++..|  .++.+++++|.+|..    .+++++|+.+|+++.++ |+++.+...|..+...
T Consensus       110 ~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~  174 (212)
T 3rjv_A          110 TLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQ  174 (212)
T ss_dssp             HHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHc
Confidence            99999999998  469999999999999    99999999999999998 7777788888877643

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.00  E-value=1e-09  Score=95.52  Aligned_cols=102  Identities=16%  Similarity=0.114  Sum_probs=90.8

Q ss_pred             hhhhhhHHHHHHHhhCHHHHHHHHHhHhc----------------CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024531          134 NPCHLNMAACLLKLKRYEEAIGQCSLVLG----------------EDENNVKALFRRGKARAELGQTDAAREDFLKAGKF  197 (266)
Q Consensus       134 ~~~~~n~a~~~~~~~~~~~A~~~~~~al~----------------l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  197 (266)
                      ...+.++|.++++.|+|++|+..|+++++                ++|.+..+++++|.+|..+|+|++|+.+|++++++
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  302 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  302 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            34588999999999999999999999998                88889999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 024531          198 APEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEP  236 (266)
Q Consensus       198 ~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~~  236 (266)
                      +|++..++..++.+...+++..++.. .|++++...+..
T Consensus       303 ~p~~~~a~~~lg~~~~~~g~~~eA~~-~l~~Al~l~P~~  340 (370)
T 1ihg_A          303 DPSNTKALYRRAQGWQGLKEYDQALA-DLKKAQEIAPED  340 (370)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTTC
T ss_pred             CchhHHHHHHHHHHHHHccCHHHHHH-HHHHHHHhCCCC
Confidence            99999999999999888887766554 478887765543

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.99  E-value=9.3e-09  Score=91.22  Aligned_cols=119  Identities=13%  Similarity=0.044  Sum_probs=91.8

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531           82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  161 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al  161 (266)
                      .+....+.+...-..|+|++|+..|.++++........+         .......+.|+|.+|..+|+|++|+.+++++|
T Consensus       297 ~~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~---------Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL  367 (433)
T 3qww_A          297 YARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDS---------NVYMLHMMYQAMGVCLYMQDWEGALKYGQKII  367 (433)
T ss_dssp             HHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTT---------SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChh---------chHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            344444555555667899999999999998754311100         01134478999999999999999999999999


Q ss_pred             cC--------CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHHHHHH
Q 024531          162 GE--------DENNVKALFRRGKARAELGQTDAAREDFLKAGKF-----APEDKSIARELR  209 (266)
Q Consensus       162 ~l--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l-----~p~~~~~~~~l~  209 (266)
                      .+        .|+-...++++|.+|..+|+|++|+..|++|+.+     .|+++.+.....
T Consensus       368 ~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~  428 (433)
T 3qww_A          368 KPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQ  428 (433)
T ss_dssp             HHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred             HHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence            55        4445678999999999999999999999999995     688888776444

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.98  E-value=3.3e-08  Score=84.41  Aligned_cols=116  Identities=13%  Similarity=-0.001  Sum_probs=102.0

Q ss_pred             HHHHHHHhHHHHhhcc----------HHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhC--H
Q 024531           83 ADRRKMDGNALFKEEK----------LEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR--Y  150 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~----------~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~--~  150 (266)
                      ...+..++..+...+.          +.+++..+..++..+|.+..                 ++++++.++..++.  +
T Consensus        64 ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~-----------------aW~hR~wlL~~l~~~~~  126 (331)
T 3dss_A           64 ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG-----------------TWHHRCWLLSRLPEPNW  126 (331)
T ss_dssp             HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHCSSCCH
T ss_pred             HHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHhccCcccH
Confidence            3444555666655544          78999999999999999766                 69999999999994  9


Q ss_pred             HHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 024531          151 EEAIGQCSLVLGEDENNVKALFRRGKARAELGQ-TDAAREDFLKAGKFAPEDKSIARELRLLAEHE  215 (266)
Q Consensus       151 ~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~-~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  215 (266)
                      .+++..|.++++.||.|..||..++.++..+|. ++++++++.++++.+|.|..+......+....
T Consensus       127 ~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l  192 (331)
T 3dss_A          127 ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  192 (331)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999 69999999999999999999999998887665

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.97  E-value=1.1e-08  Score=86.57  Aligned_cols=117  Identities=9%  Similarity=-0.132  Sum_probs=84.5

Q ss_pred             HHHHHHHHHhHHHHhhc--cHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHH----HHh---hCHH
Q 024531           81 GAADRRKMDGNALFKEE--KLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACL----LKL---KRYE  151 (266)
Q Consensus        81 ~~~~~~~~~g~~~~~~g--~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~----~~~---~~~~  151 (266)
                      +....+..+|..+...+  ++++++..+..+|..+|....                 +.+.++.++    ..+   +++.
T Consensus        65 ~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~-----------------aW~~R~~iL~~~~~~l~~~~~~~  127 (306)
T 3dra_A           65 SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQ-----------------IWNYRQLIIGQIMELNNNDFDPY  127 (306)
T ss_dssp             TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCH-----------------HHHHHHHHHHHHHHHTTTCCCTH
T ss_pred             HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHH-----------------HHHHHHHHHHHHHHhccccCCHH
Confidence            44555677888888888  999999999999999998654                 466666666    555   5667


Q ss_pred             HHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHH--HHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024531          152 EAIGQCSLVLGEDENNVKALFRRGKARAELGQTD--AAREDFLKAGKFAPEDKSIARELRLLAEH  214 (266)
Q Consensus       152 ~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~--~A~~~~~~al~l~p~~~~~~~~l~~l~~~  214 (266)
                      +++..++++++.+|.|..+|+.++.++..+|.++  ++++.+.++++.+|.|-.+......+...
T Consensus       128 ~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~  192 (306)
T 3dra_A          128 REFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFS  192 (306)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence            7777777777777777777777777777777766  77777777777777776666666655443

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.93  E-value=5.5e-09  Score=88.50  Aligned_cols=132  Identities=9%  Similarity=-0.095  Sum_probs=114.5

Q ss_pred             HHHHHHhHHH----Hhh---ccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHH--HHH
Q 024531           84 DRRKMDGNAL----FKE---EKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYE--EAI  154 (266)
Q Consensus        84 ~~~~~~g~~~----~~~---g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~--~A~  154 (266)
                      ..+..++..+    ...   +++.+++..+.+++..+|.+..                 +..+++.+..+++.++  +++
T Consensus       104 ~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~-----------------aW~~R~~vl~~l~~~~~~~EL  166 (306)
T 3dra_A          104 QIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHH-----------------VWSYRKWLVDTFDLHNDAKEL  166 (306)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHhcccChHHHH
Confidence            3445666666    555   7899999999999999999776                 6999999999999998  999


Q ss_pred             HHHHhHhcCCCCchHHHHHHHHHHHHcCC------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024531          155 GQCSLVLGEDENNVKALFRRGKARAELGQ------TDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKG  228 (266)
Q Consensus       155 ~~~~~al~l~p~~~~a~~~~g~~~~~~g~------~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k  228 (266)
                      .+++++++.+|.|..||..++.++..++.      ++++++++.+++.++|+|..+...+..+....++...+......+
T Consensus       167 ~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~  246 (306)
T 3dra_A          167 SFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQ  246 (306)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHT
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHH
Confidence            99999999999999999999999999998      999999999999999999999999998877766655555566666


Q ss_pred             ccCC
Q 024531          229 IFGP  232 (266)
Q Consensus       229 ~~~~  232 (266)
                      ++..
T Consensus       247 ~~~~  250 (306)
T 3dra_A          247 FVDL  250 (306)
T ss_dssp             TEEG
T ss_pred             HHhc
Confidence            6653

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.93  E-value=3.1e-08  Score=87.83  Aligned_cols=122  Identities=15%  Similarity=0.032  Sum_probs=93.8

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  162 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~  162 (266)
                      +.........+..+|+|++|+..|.++++........+         ......++.|+|.+|..+|+|++|+.++.++|.
T Consensus       287 ~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~---------h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~  357 (429)
T 3qwp_A          287 VQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDI---------NIYQLKVLDCAMDACINLGLLEEALFYGTRTME  357 (429)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTT---------SHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCcc---------chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            33444555667788999999999999998643211100         011455799999999999999999999999995


Q ss_pred             C--------CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHH
Q 024531          163 E--------DENNVKALFRRGKARAELGQTDAAREDFLKAGKF-----APEDKSIARELRLLAE  213 (266)
Q Consensus       163 l--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l-----~p~~~~~~~~l~~l~~  213 (266)
                      +        .|.-...++++|.+|..+|+|++|+..|++|+.+     .|+++.+...+..+..
T Consensus       358 i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~  421 (429)
T 3qwp_A          358 PYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEE  421 (429)
T ss_dssp             HHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHH
T ss_pred             hHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence            5        3444578999999999999999999999999985     6888877766554443

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A

Probab=98.92  E-value=1.7e-09  Score=81.44  Aligned_cols=59  Identities=37%  Similarity=0.624  Sum_probs=55.0

Q ss_pred             ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeecc
Q 024531            2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD   63 (266)
Q Consensus         2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~~   63 (266)
                      +||.+ ++|+||+.+|..|+.||++.|.|+|.++||..|.  ++.|||++++.|+++|.++.
T Consensus        84 ~lG~g-~~i~G~e~~l~gm~~Ge~~~v~ipp~~aYG~~g~--~~~Ipp~~~L~f~VeL~~ik  142 (144)
T 3o5e_A           84 SLGKG-QVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGS--LPKIPSNATLFFEIELLDFK  142 (144)
T ss_dssp             ETTSS-SSCHHHHHHHTTCCBTCEEEEEECGGGTTTTTCB--TTTBCTTCCEEEEEEEEEEE
T ss_pred             EeCCC-cccHHHHHHHhCCCCCCEEEEEEChHHCcCCCCC--CCCcCCCCeEEEEEEEEEec
Confidence            57887 7999999999999999999999999999999998  57899999999999999874

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.92  E-value=2.2e-08  Score=85.54  Aligned_cols=140  Identities=14%  Similarity=0.006  Sum_probs=117.0

Q ss_pred             HHHHHHHHHHhHHHHhhc--cHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhC-HHHHHHH
Q 024531           80 IGAADRRKMDGNALFKEE--KLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR-YEEAIGQ  156 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g--~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~-~~~A~~~  156 (266)
                      ++....+..++..+...+  ++.+++..+.++++.+|.+..                 ++++++.+....|. +++++.+
T Consensus       105 PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~-----------------AW~~R~~vl~~l~~~~~eel~~  167 (331)
T 3dss_A          105 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFH-----------------CWDYRRFVAAQAAVAPAEELAF  167 (331)
T ss_dssp             TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHhCcCHHHHHHH
Confidence            344556677788887777  499999999999999999766                 69999999999998 6999999


Q ss_pred             HHhHhcCCCCchHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH-------
Q 024531          157 CSLVLGEDENNVKALFRRGKARAEL--------------GQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE-------  215 (266)
Q Consensus       157 ~~~al~l~p~~~~a~~~~g~~~~~~--------------g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~-------  215 (266)
                      +.+++..+|.|..||..++.++..+              +.++++++++.+++.++|+|..+...+.-+....       
T Consensus       168 ~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~  247 (331)
T 3dss_A          168 TDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELS  247 (331)
T ss_dssp             HHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCC
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccc
Confidence            9999999999999999999999988              5689999999999999999999998666553332       


Q ss_pred             ---HHHHHHHHHHHhcccCCCCCC
Q 024531          216 ---KAVYKKQKEIYKGIFGPRPEP  236 (266)
Q Consensus       216 ---~~~~~~~~~~~~k~~~~~~~~  236 (266)
                         ....+++-..+.+++...|++
T Consensus       248 ~~~~~~l~~el~~~~elle~~pd~  271 (331)
T 3dss_A          248 VEKSTVLQSELESCKELQELEPEN  271 (331)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             hHHHHHHHHHHHHHHHHHhhCccc
Confidence               134455666688888777764

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.92  E-value=6.9e-09  Score=86.47  Aligned_cols=133  Identities=15%  Similarity=0.059  Sum_probs=108.6

Q ss_pred             HHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcC
Q 024531           84 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE  163 (266)
Q Consensus        84 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l  163 (266)
                      ......+..+...|+|++|...|..++...|...                  +++.+|.++++.++|++|+..++.++..
T Consensus       103 dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~------------------~~~~~a~l~~~~~r~~dA~~~l~~a~~~  164 (282)
T 4f3v_A          103 AITMGFAACEAAQGNYADAMEALEAAPVAGSEHL------------------VAWMKAVVYGAAERWTDVIDQVKSAGKW  164 (282)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH------------------HHHHHHHHHHHTTCHHHHHHHHTTGGGC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH------------------HHHHHHHHHHHcCCHHHHHHHHHHhhcc
Confidence            3445668888899999999999999998777632                  4889999999999999999999999876


Q ss_pred             CCCc--hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CC-CHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 024531          164 DENN--VKALFRRGKARAELGQTDAAREDFLKAGKFA--PE-DKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPE  235 (266)
Q Consensus       164 ~p~~--~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~--p~-~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~  235 (266)
                      .+..  ..+++.+|.++..+|++++|+.+|++++.-.  |. ..++...++.+...+++..++ ...|++++...|.
T Consensus       165 ~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA-~~~l~~a~a~~P~  240 (282)
T 4f3v_A          165 PDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAA-VALLEWLQTTHPE  240 (282)
T ss_dssp             SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHH-HHHHHHHHHHSCC
T ss_pred             CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhcCCc
Confidence            4222  4589999999999999999999999998654  65 667888888887777776544 4558888876665

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.90  E-value=3.1e-08  Score=85.28  Aligned_cols=129  Identities=7%  Similarity=-0.094  Sum_probs=87.8

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531           82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  161 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al  161 (266)
                      .+..+...|..++..|+++.|+..|.+++.+.+.....           .....++.++|.++...|++++|+..+.+++
T Consensus        52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----------~~~~~~~~~la~~~~~~G~~~~A~~~~~~al  120 (373)
T 1hz4_A           52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW-----------HYALWSLIQQSEILFAQGFLQTAWETQEKAF  120 (373)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH-----------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            34556677888888888888888888888876653221           1122346778888888888888888888887


Q ss_pred             cCC--------CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHHHHHHHH
Q 024531          162 GED--------ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED-----KSIARELRLLAEHEKAVYKK  221 (266)
Q Consensus       162 ~l~--------p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~-----~~~~~~l~~l~~~~~~~~~~  221 (266)
                      .+.        |....++..+|.++..+|++++|...+++++.+.|..     ..+...+..+....++..++
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  193 (373)
T 1hz4_A          121 QLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNA  193 (373)
T ss_dssp             HHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence            654        3345667778888888888888888888888877642     23455555555555544433

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.90  E-value=2.3e-08  Score=90.68  Aligned_cols=135  Identities=7%  Similarity=-0.108  Sum_probs=111.1

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  162 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~  162 (266)
                      ...+...|..+...|++++|...|.+++...|.+..                .++.+.+.++.+.|++++|...|.+|++
T Consensus       321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~----------------~~~~~~~~~~~~~~~~~~A~~~~~~Al~  384 (530)
T 2ooe_A          321 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT----------------LVYIQYMKFARRAEGIKSGRMIFKKARE  384 (530)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCch----------------HHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            445566778888899999999999999999887532                1588999999999999999999999999


Q ss_pred             CCCCchHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 024531          163 EDENNVKALFRRGKA-RAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRP  234 (266)
Q Consensus       163 l~p~~~~a~~~~g~~-~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~  234 (266)
                      ..|.+...+...+.+ +...|++++|...|+++++.+|+++.+...+..+....++. .+.+..|.+.+...+
T Consensus       385 ~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~-~~Ar~~~~~al~~~~  456 (530)
T 2ooe_A          385 DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNED-NNTRVLFERVLTSGS  456 (530)
T ss_dssp             CTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCH-HHHHHHHHHHHHSCC
T ss_pred             ccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCH-hhHHHHHHHHHhccC
Confidence            999888877766655 44699999999999999999999999998888876555544 455667888876644

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.89  E-value=1.7e-08  Score=71.45  Aligned_cols=79  Identities=15%  Similarity=0.016  Sum_probs=70.5

Q ss_pred             hhhhHHHHHHHhhCHHHHHHHHHhHhcCC-------CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 024531          136 CHLNMAACLLKLKRYEEAIGQCSLVLGED-------ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIAREL  208 (266)
Q Consensus       136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~-------p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l  208 (266)
                      -++.+|..++..++|..|+..++.|+...       +.....+..+|.|+..+|+++.|+..+++++.++|+++.+...+
T Consensus         7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~   86 (104)
T 2v5f_A            7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL   86 (104)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence            37799999999999999999999999753       35678899999999999999999999999999999999998888


Q ss_pred             HHHHHH
Q 024531          209 RLLAEH  214 (266)
Q Consensus       209 ~~l~~~  214 (266)
                      ..+...
T Consensus        87 ~~~~~~   92 (104)
T 2v5f_A           87 KYFEYI   92 (104)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            755443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.88  E-value=1.2e-08  Score=70.80  Aligned_cols=67  Identities=13%  Similarity=-0.066  Sum_probs=62.2

Q ss_pred             hhhhHHHHHHHhhC---HHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 024531          136 CHLNMAACLLKLKR---YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK  202 (266)
Q Consensus       136 ~~~n~a~~~~~~~~---~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~  202 (266)
                      ++..+|.+++..++   .++|...++++|.+||+++.+++.+|..++..|+|++|+..|++++..+|.++
T Consensus         8 ~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~   77 (93)
T 3bee_A            8 QLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL   77 (93)
T ss_dssp             HHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            58889999876665   79999999999999999999999999999999999999999999999999853

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A

Probab=98.88  E-value=3.7e-09  Score=78.05  Aligned_cols=60  Identities=32%  Similarity=0.514  Sum_probs=55.1

Q ss_pred             ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeeccc
Q 024531            2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDE   64 (266)
Q Consensus         2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~~~   64 (266)
                      +||.+ .+|+||+.+|..|+.||+..|.|+|.++||..|.  ++.||+++++.|.++|.++..
T Consensus        68 ~lG~g-~~i~g~e~~l~gm~~Ge~~~v~ip~~~aYG~~~~--~~~Ip~~~~l~f~vel~~v~~  127 (129)
T 2vn1_A           68 HLEQG-EVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGC--GESIPGNSVLLFEIELLSFRE  127 (129)
T ss_dssp             ETTSS-SSCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCB--TTTBCTTCCEEEEEEEEEEEC
T ss_pred             EeCCC-CcCHHHHHHHhCCCCCCEEEEEEChHHcCCCCCC--CCCcCCCCeEEEEEEEEEEec
Confidence            57887 7999999999999999999999999999999887  567999999999999998764

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drk_A* 4drm_A* 4drn_A* 4dro_A* 4drp_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A

Probab=98.88  E-value=3.3e-09  Score=78.16  Aligned_cols=59  Identities=37%  Similarity=0.624  Sum_probs=54.9

Q ss_pred             ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeecc
Q 024531            2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD   63 (266)
Q Consensus         2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~~   63 (266)
                      ++|.+ ++|+||+.+|..|+.||+..|.|+|.++||..|.  ++.||+++++.|+++|.++.
T Consensus        68 ~lG~g-~~i~G~e~~l~gm~~Ge~~~v~ip~~~aYG~~g~--~~~Ip~~~~l~f~vel~~i~  126 (128)
T 3o5q_A           68 SLGKG-QVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGS--LPKIPSNATLFFEIELLDFK  126 (128)
T ss_dssp             ETTSS-SSCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCB--TTTBCTTCCEEEEEEEEEEE
T ss_pred             EECCC-CccHHHHHHHhcCCCCCEEEEEEChHHcCCCCCC--CCCcCCCCEEEEEEEEEEec
Confidence            57877 7999999999999999999999999999999998  57899999999999999874

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens}

Probab=98.87  E-value=2.5e-09  Score=79.45  Aligned_cols=59  Identities=29%  Similarity=0.527  Sum_probs=53.2

Q ss_pred             ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeecc
Q 024531            2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD   63 (266)
Q Consensus         2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~~   63 (266)
                      +||.+ .+|+||+.+|..|+.||++.|.|+|.++||..+.  ++.||+++++.|.|+|.++.
T Consensus        75 ~lG~g-~~i~G~e~aL~gm~~Ge~~~v~ip~~~aYG~~~~--~~~Ip~~~~l~f~VeL~~i~  133 (134)
T 3b7x_A           75 KLGED-ITLWGMELGLLSMRRGELARFLFKPNYAYGTLGC--PPLIPPNTTVLFEIELLDFL  133 (134)
T ss_dssp             EC-CC-CCCHHHHHHHHTCEETCEEEEEECGGGTTTTTCB--TTTBCTTCCEEEEEEEEEEC
T ss_pred             EcCCc-chhHHHHHHHhCCCCCCEEEEEECHHHCcCCCCC--CCCcCcCCeEEEEEEEEEEe
Confidence            47887 7999999999999999999999999999999887  56799999999999998764

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} SCOP: d.26.1.1 PDB: 1pbk_A*

Probab=98.87  E-value=2.9e-09  Score=77.45  Aligned_cols=59  Identities=31%  Similarity=0.489  Sum_probs=53.0

Q ss_pred             ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeec
Q 024531            2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF   62 (266)
Q Consensus         2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~   62 (266)
                      ++|.+ ++|+||+.+|..|+.||+..|.|+|.++||..|.+ ...|||++++.|+++|.++
T Consensus        60 ~lG~~-~~i~G~e~~l~gm~~Ge~~~v~ip~~~aYG~~g~~-~~~Ip~~~~l~f~veL~~i  118 (119)
T 3kz7_A           60 KVGVG-KVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQP-DAKIPPNTKLIFEVELVDI  118 (119)
T ss_dssp             ETTSS-SSCHHHHHHHTTCCTTCEEEEEECGGGTTCTTCBG-GGTBCTTCCEEEEEEEEEE
T ss_pred             EECCC-ChhHHHHHHHhCCCCCCEEEEEECcHHhcCCCCCC-CCccCcCCeEEEEEEEEEe
Confidence            47877 79999999999999999999999999999999872 1269999999999999875

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.87  E-value=2e-08  Score=78.47  Aligned_cols=110  Identities=10%  Similarity=-0.034  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531           80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  159 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~  159 (266)
                      ...+..+...|..+...|++++|+..|.+++.+.......          ......++.++|.++..+|++++|+.++.+
T Consensus        63 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~  132 (203)
T 3gw4_A           63 TAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPED----------PLAASANAYEVATVALHFGDLAGARQEYEK  132 (203)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC----------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCcc----------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            3456778899999999999999999999999985422100          011344789999999999999999999999


Q ss_pred             HhcCCCC------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 024531          160 VLGEDEN------NVKALFRRGKARAELGQTDAAREDFLKAGKFAP  199 (266)
Q Consensus       160 al~l~p~------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p  199 (266)
                      ++.+.+.      ...++..+|.++..+|++++|...+++++.+..
T Consensus       133 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  178 (203)
T 3gw4_A          133 SLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA  178 (203)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence            9966321      134578999999999999999999999998754

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=98.86  E-value=3e-09  Score=75.15  Aligned_cols=61  Identities=34%  Similarity=0.557  Sum_probs=55.9

Q ss_pred             ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeecccc
Q 024531            2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDET   65 (266)
Q Consensus         2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~~~~   65 (266)
                      +||.+ ++++||+.+|..|+.||+..|.++|.++||..+.  .+.||+++++.|.+++.++...
T Consensus        39 ~lG~~-~~i~g~~~~l~gm~~Ge~~~v~ip~~~ayG~~~~--~~~Ip~~~~l~f~v~l~~v~~~   99 (102)
T 2pbc_A           39 SLGTG-QVIKGWDQGLLGMCEGEKRKLVIPSELGYGERGA--PPKIPGGATLVFEVELLKIERR   99 (102)
T ss_dssp             ETTSS-SSCHHHHTTSTTCCTTCEEEEEECGGGTTTTTCB--TTTBCTTCCEEEEEEEEEEGGG
T ss_pred             EeCCC-CccHHHHHHHhCCCCCCEEEEEECHHHCcCCCCC--CCCcCcCCeEEEEEEEEEeccc
Confidence            57887 7999999999999999999999999999999887  5679999999999999988664

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A

Probab=98.86  E-value=4.7e-09  Score=76.23  Aligned_cols=59  Identities=31%  Similarity=0.451  Sum_probs=54.1

Q ss_pred             ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeecc
Q 024531            2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD   63 (266)
Q Consensus         2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~~   63 (266)
                      +||.+ .+++||+.+|..|+.||+..|.++|.++||..+.  ++.||+++++.|.++|.++.
T Consensus        59 ~lG~~-~~i~g~e~~l~gm~~Ge~~~~~ip~~~ayG~~~~--~~~Ip~~~~l~f~v~l~~v~  117 (118)
T 2awg_A           59 TLGDC-DVIQALDLSVPLMDVGETAMVTADSKYCYGPQGR--SPYIPPHAALCLEVTLKTAV  117 (118)
T ss_dssp             ETTSS-CSCHHHHHHGGGSCTTCEEEEEECGGGTTTTTCB--TTTBCTTCCEEEEEEEEEEE
T ss_pred             EECCC-ChhHHHHHHHhCCCCCCEEEEEEChHHccCCCCC--CCccCCCCeEEEEEEEEEec
Confidence            57887 7999999999999999999999999999999887  56799999999999998764

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...

Probab=98.85  E-value=5e-09  Score=74.71  Aligned_cols=58  Identities=33%  Similarity=0.581  Sum_probs=53.3

Q ss_pred             ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeec
Q 024531            2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF   62 (266)
Q Consensus         2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~   62 (266)
                      ++|.+ ++++||+.+|..|+.||+..|.++|.++||..+.  ++.||+++++.|.+++.++
T Consensus        49 ~lG~~-~~i~g~~~~l~gm~~Ge~~~~~ip~~~ayG~~~~--~~~Ip~~~~l~f~v~l~~v  106 (107)
T 2ppn_A           49 MLGKQ-EVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGH--PGIIPPHATLVFDVELLKL  106 (107)
T ss_dssp             ETTSC-CSCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCB--TTTBCTTCCEEEEEEEEEE
T ss_pred             EeCCC-ChHHHHHHHHhCCCCCCEEEEEECHHHccCCCCC--CCCcCCCCeEEEEEEEEEe
Confidence            57887 7999999999999999999999999999999887  5579999999999999865

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens}

Probab=98.85  E-value=5.2e-09  Score=79.59  Aligned_cols=62  Identities=29%  Similarity=0.443  Sum_probs=56.4

Q ss_pred             ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCC-CCCCCCCCCCCceEEEEEEeeccccc
Q 024531            2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEG-SFSFPNVSPMADLVYEVVLIGFDETK   66 (266)
Q Consensus         2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g-~~~~~~ip~~~~~~~~i~l~~~~~~~   66 (266)
                      +||.+ ++|+||+.+|..|+.||+..|.|.|.++||..| .  .+.|||++++.|+++|.++....
T Consensus        89 ~lG~g-~vi~G~eeaL~gMk~Ge~~~v~IP~~~aYG~~g~~--~~~IPp~stLiF~VeL~~i~~~~  151 (157)
T 2jwx_A           89 TLGDC-DVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSR--SPYIPPHAALCLEVTLKTAVDLE  151 (157)
T ss_dssp             ETTTT-SSCHHHHHHTTTSCTTCEEEEEECGGGTTTTTCCS--SSCCCTTCCEEEEEEEEEEEECS
T ss_pred             EeCCC-ChhHHHHHHHcCCCCCCEEEEEECchhcCCccccc--CCCcCCCCeEEEEEEEEEEEccc
Confidence            57887 799999999999999999999999999999988 4  46799999999999999987654

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens}

Probab=98.85  E-value=4.6e-09  Score=77.09  Aligned_cols=60  Identities=30%  Similarity=0.546  Sum_probs=55.0

Q ss_pred             ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeecccc
Q 024531            2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDET   65 (266)
Q Consensus         2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~~~~   65 (266)
                      +||.+ ++|+||+.+|..|+.||+..|.|.|.++||..|.   +.||+++++.|+++|.++.+.
T Consensus        65 ~lG~~-~~i~G~e~~l~gm~~Ge~~~~~ip~~~aYG~~g~---~~Ip~~~~l~f~vel~~i~~~  124 (125)
T 4dip_A           65 TLGIL-EALKGWDQGLKGMCVGEKRKLIIPPALGYGKEGK---GKIPPESTLIFNIDLLEIRNG  124 (125)
T ss_dssp             ETTSC-SSCHHHHHHSTTCCTTCEEEEEECGGGTTTTTCB---TTBCTTCCEEEEEEEEEEECC
T ss_pred             EeCCC-ChhHHHHHHHhCCCCCCEEEEEEChHHhcCCCCC---CCCCCCCeEEEEEEEEEEEcC
Confidence            57887 7999999999999999999999999999999986   489999999999999987653

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.85  E-value=6.1e-08  Score=83.21  Aligned_cols=126  Identities=13%  Similarity=0.039  Sum_probs=106.8

Q ss_pred             hHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhh-CHHHHHHHHHhHhcCCCCch
Q 024531           90 GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK-RYEEAIGQCSLVLGEDENNV  168 (266)
Q Consensus        90 g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~-~~~~A~~~~~~al~l~p~~~  168 (266)
                      .......+...+|+..+.++|.++|+...                 +.+.++.++..++ .+++++..++.+|..+|.+.
T Consensus        61 r~~~~~~e~se~AL~lt~~~L~~nP~~yt-----------------aWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny  123 (349)
T 3q7a_A           61 RAIAAKEEKSERALELTEIIVRMNPAHYT-----------------VWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSY  123 (349)
T ss_dssp             HHHHHTTCCSHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHhCchhHH-----------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcH
Confidence            33444455667899999999999999765                 6999999999999 59999999999999999999


Q ss_pred             HHHHHHHHHHHHc-C-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH-------HHHHHHHhcccCC
Q 024531          169 KALFRRGKARAEL-G-QTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVY-------KKQKEIYKGIFGP  232 (266)
Q Consensus       169 ~a~~~~g~~~~~~-g-~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~-------~~~~~~~~k~~~~  232 (266)
                      .+|+.++.++..+ + +++++++.+.++++++|.|-.+.....-+....+...       .++-..+.+++..
T Consensus       124 ~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~  196 (349)
T 3q7a_A          124 QVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV  196 (349)
T ss_dssp             HHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh
Confidence            9999999999998 8 9999999999999999999999998888777666554       2444456666653

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1

Probab=98.84  E-value=5.9e-09  Score=75.11  Aligned_cols=58  Identities=26%  Similarity=0.478  Sum_probs=53.3

Q ss_pred             ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeec
Q 024531            2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF   62 (266)
Q Consensus         2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~   62 (266)
                      +||.+ ++++||+.+|..|+.||+..|.++|.++||..+.  ++.||+++++.|.+++.++
T Consensus        55 ~lG~~-~~i~g~e~~l~gm~~Ge~~~v~ip~~~ayG~~~~--~~~Ip~~~~l~f~vel~~i  112 (113)
T 1yat_A           55 NIGVG-QVIKGWDVGIPKLSVGEKARLTIPGPYAYGPRGF--PGLIPPNSTLVFDVELLKV  112 (113)
T ss_dssp             ETTSS-SSCHHHHHHGGGCCTTCEEEEEECGGGTTTTTCB--TTTBCTTCCEEEEEEEEEE
T ss_pred             EeCCC-CccHHHHHHHhCCCCCCEEEEEECHHHCcCCCCC--CCCcCCCCeEEEEEEEEEe
Confidence            57887 7999999999999999999999999999999887  5579999999999999865

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.83  E-value=1.2e-08  Score=71.34  Aligned_cols=70  Identities=13%  Similarity=0.090  Sum_probs=63.5

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531           82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  161 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al  161 (266)
                      ....+..+|..++..|+|++|+..|+++++++|+...                 ++.++|.+|..+|++++|+..+++++
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-----------------a~~~lg~~~~~~g~~~~A~~~~~~al   68 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVG-----------------TYYHLGKLYERLDRTDDAIDTYAQGI   68 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3567889999999999999999999999999998665                 69999999999999999999999999


Q ss_pred             cCCCCch
Q 024531          162 GEDENNV  168 (266)
Q Consensus       162 ~l~p~~~  168 (266)
                      .+.|.+.
T Consensus        69 ~l~~~~~   75 (100)
T 3ma5_A           69 EVAREEG   75 (100)
T ss_dssp             HHHHHHS
T ss_pred             hhhhcCC
Confidence            9877543

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia}

Probab=98.83  E-value=6.7e-09  Score=76.68  Aligned_cols=58  Identities=38%  Similarity=0.695  Sum_probs=53.1

Q ss_pred             ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeec
Q 024531            2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF   62 (266)
Q Consensus         2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~   62 (266)
                      +||.+ ++|+||+.+|..|+.||+..|.|+|.++||..+.  ++.||+++++.|+++|.++
T Consensus        73 ~lG~g-~vi~G~e~aL~gm~~Ge~~~v~ip~~~aYG~~~~--~~~Ip~~~~l~f~VeL~~i  130 (130)
T 2lgo_A           73 TLGAG-EVIKGWDQGVATMTLGEKALFTIPYQLAYGERGY--PPVIPPKATLVFEVELLAV  130 (130)
T ss_dssp             ETTST-TSCHHHHHHHHHSCTTEEEEEEECTTTSTTTTCC--STTSCSSCCEEEEEEEEEC
T ss_pred             EeCCC-CccHHHHHHHhCCCCCCEEEEEECcHHHCCCCCC--CCCcCCCCeEEEEEEEEEC
Confidence            57887 7999999999999999999999999999999887  5579999999999999764

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1

Probab=98.81  E-value=7.8e-09  Score=76.88  Aligned_cols=61  Identities=33%  Similarity=0.596  Sum_probs=55.8

Q ss_pred             ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeecccc
Q 024531            2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDET   65 (266)
Q Consensus         2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~~~~   65 (266)
                      +||.+ ++|+||+.+|..|+.||++.|.|+|.++||..|.  ++.||+++++.|.+++..+...
T Consensus        63 ~lG~~-~vi~G~e~~l~gm~~Ge~~~v~ip~~~aYG~~g~--~~~Ip~~~~l~f~v~l~~i~~~  123 (135)
T 1r9h_A           63 NLGRG-NVIKGWDLGVATMTKGEVAEFTIRSDYGYGDAGS--PPKIPGGATLIFEVELFEWSAE  123 (135)
T ss_dssp             ETTTT-SSCHHHHHHHTTCCBTCEEEEEECGGGTTTTTCB--TTTBCTTCCEEEEEEEEEEEC-
T ss_pred             EeCCC-CccHHHHHHHhcCCCCCEEEEEEChHHcCCCCCC--CCCcCcCCcEEEEEEEEEeecC
Confidence            57887 7999999999999999999999999999999887  5789999999999999988654

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*

Probab=98.81  E-value=7.1e-09  Score=76.83  Aligned_cols=58  Identities=38%  Similarity=0.547  Sum_probs=53.0

Q ss_pred             ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeec
Q 024531            2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF   62 (266)
Q Consensus         2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~   62 (266)
                      +||.+ ++|+||+.+|..|+.||+..|.|+|.++||..+.  .+.|||++++.|+++|.++
T Consensus        76 ~lG~g-~vi~G~eeaL~gmk~Ge~~~v~ip~~~aYG~~~~--~~~Ipp~~~l~f~VeL~~I  133 (133)
T 2y78_A           76 VLGGG-MVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGA--GGVIPPNATLVFEVELLDV  133 (133)
T ss_dssp             ETTSS-SSCHHHHHHSTTCBTTCEEEEEECGGGTTTTTCB--TTTBCTTCCEEEEEEEEEC
T ss_pred             EeCCC-ChhHHHHHHHcCCCCCCEEEEEECcHHhCCCCCC--CCCCCCCCeEEEEEEEEEC
Confidence            57888 7999999999999999999999999999999887  4579999999999999763

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.81  E-value=1.2e-07  Score=68.87  Aligned_cols=103  Identities=14%  Similarity=0.115  Sum_probs=84.3

Q ss_pred             hccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHH---HHHHHHhHhcCC-C-CchHH
Q 024531           96 EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEE---AIGQCSLVLGED-E-NNVKA  170 (266)
Q Consensus        96 ~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~---A~~~~~~al~l~-p-~~~~a  170 (266)
                      ......+.+.|.+.+...+....                 +.+++|.++.+......   ++..+...+..+ | ..-++
T Consensus        14 ~~~l~~~~~~y~~e~~~~~~s~~-----------------~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~   76 (126)
T 1nzn_A           14 VEDLLKFEKKFQSEKAAGSVSKS-----------------TQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDY   76 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHH-----------------HHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCCcHH-----------------HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHH
Confidence            34456667777777765544332                 58899999999887666   999999999987 5 57789


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 024531          171 LFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE  215 (266)
Q Consensus       171 ~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  215 (266)
                      +|.+|..++++|+|++|..+++.+|+.+|+|..+......+..+.
T Consensus        77 lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i  121 (126)
T 1nzn_A           77 VFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM  121 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988776665443

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.80  E-value=6e-08  Score=83.26  Aligned_cols=144  Identities=8%  Similarity=-0.076  Sum_probs=117.7

Q ss_pred             HHHHHHHHHhHHHHhhc-cHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHh-h-CHHHHHHHH
Q 024531           81 GAADRRKMDGNALFKEE-KLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKL-K-RYEEAIGQC  157 (266)
Q Consensus        81 ~~~~~~~~~g~~~~~~g-~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~-~-~~~~A~~~~  157 (266)
                      +....+..+|..+...| .+++++..+..+|..+|....                 +.+.++.++..+ + ++++++..+
T Consensus        86 ~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~-----------------aW~hR~wlL~~l~~~~~~~EL~~~  148 (349)
T 3q7a_A           86 AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQ-----------------VWHHRLLLLDRISPQDPVSEIEYI  148 (349)
T ss_dssp             TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHH-----------------HHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHH-----------------HHHHHHHHHHHhcCCChHHHHHHH
Confidence            34455677888888888 599999999999999999766                 699999999998 8 899999999


Q ss_pred             HhHhcCCCCchHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH------HHHHHH
Q 024531          158 SLVLGEDENNVKALFRRGKARAELGQTD--------AAREDFLKAGKFAPEDKSIARELRLLAEHEKA------VYKKQK  223 (266)
Q Consensus       158 ~~al~l~p~~~~a~~~~g~~~~~~g~~~--------~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~------~~~~~~  223 (266)
                      ++++..+|.|..+|+.++.++..+|.++        ++++++.++++.+|.|-.+......+......      .-+++-
T Consensus       149 ~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eEL  228 (349)
T 3q7a_A          149 HGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDEL  228 (349)
T ss_dssp             HHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHH
Confidence            9999999999999999999999999988        99999999999999999999998887655432      123344


Q ss_pred             HHHhcccCCCCCCcccchhH
Q 024531          224 EIYKGIFGPRPEPKQKKNWL  243 (266)
Q Consensus       224 ~~~~k~~~~~~~~~~~~~~~  243 (266)
                      ..+.+++..  .+...++|.
T Consensus       229 e~~~~aI~~--~P~n~SaW~  246 (349)
T 3q7a_A          229 IYILKSIHL--IPHNVSAWN  246 (349)
T ss_dssp             HHHHHHHHH--CTTCHHHHH
T ss_pred             HHHHHHHHh--CCCCHHHHH
Confidence            445555533  333345663

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.79  E-value=4.3e-08  Score=69.31  Aligned_cols=83  Identities=12%  Similarity=0.006  Sum_probs=69.0

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  162 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~  162 (266)
                      +......|..+|..++|..|+..|..|+...+.....          ..-...++.++|.|+.++|+++.|+.++++++.
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~----------~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~   74 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEIS----------TIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE   74 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCC----------SSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCC----------cccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            4566799999999999999999999999986432110          000234689999999999999999999999999


Q ss_pred             CCCCchHHHHHHH
Q 024531          163 EDENNVKALFRRG  175 (266)
Q Consensus       163 l~p~~~~a~~~~g  175 (266)
                      ++|++..+..+++
T Consensus        75 l~P~~~~~~~n~~   87 (104)
T 2v5f_A           75 LDPEHQRANGNLK   87 (104)
T ss_dssp             HCTTCHHHHHHHH
T ss_pred             cCCCCHHHHhhHH
Confidence            9999999988876

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.77  E-value=4.8e-08  Score=69.70  Aligned_cols=82  Identities=18%  Similarity=0.132  Sum_probs=71.9

Q ss_pred             HHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 024531          152 EAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFG  231 (266)
Q Consensus       152 ~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~  231 (266)
                      .|+..++++++.+|+++.+++.+|.++..+|++++|+..|++++.++|++..++..++.+....++..++.. .|.+.+.
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~   81 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQ-AWESGLA   81 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH-HHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHH-HHHHHHH
Confidence            578899999999999999999999999999999999999999999999999999999999887777665544 4677665


Q ss_pred             CCC
Q 024531          232 PRP  234 (266)
Q Consensus       232 ~~~  234 (266)
                      ..+
T Consensus        82 ~~~   84 (115)
T 2kat_A           82 AAQ   84 (115)
T ss_dssp             HHH
T ss_pred             hcc
Confidence            433

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.75  E-value=2.2e-07  Score=84.12  Aligned_cols=118  Identities=12%  Similarity=0.070  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHH-------hhCHH-------HHHHHHHhHhc-CC
Q 024531          100 EEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLK-------LKRYE-------EAIGQCSLVLG-ED  164 (266)
Q Consensus       100 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~-------~~~~~-------~A~~~~~~al~-l~  164 (266)
                      ..|+..|.+++..+|....                 ++.++|..+..       .|+++       +|+..+++|+. ++
T Consensus       255 ~~a~~~y~~al~~~p~~~~-----------------~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~  317 (530)
T 2ooe_A          255 KRVMFAYEQCLLVLGHHPD-----------------IWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL  317 (530)
T ss_dssp             HHHHHHHHHHHHHHTTCHH-----------------HHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTC
T ss_pred             HHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhC
Confidence            4788899999999998665                 68899998886       78876       99999999997 89


Q ss_pred             CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 024531          165 ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK-SIARELRLLAEHEKAVYKKQKEIYKGIFGPRPE  235 (266)
Q Consensus       165 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~  235 (266)
                      |++...++.+|.++...|++++|...|+++++++|.++ .++..+..+..+.+... +.+..|.+.+..++.
T Consensus       318 p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~-~A~~~~~~Al~~~~~  388 (530)
T 2ooe_A          318 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIK-SGRMIFKKAREDART  388 (530)
T ss_dssp             SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHTCTTC
T ss_pred             cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHH-HHHHHHHHHHhccCC
Confidence            99999999999999999999999999999999999986 57777777766666554 456678888876543

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1

Probab=98.74  E-value=5.7e-08  Score=74.65  Aligned_cols=67  Identities=24%  Similarity=0.396  Sum_probs=57.7

Q ss_pred             ccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeeccccccCCCCCCCCHHHHHH
Q 024531            8 KEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKEGKARSDMTVEERIG   81 (266)
Q Consensus         8 ~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~   81 (266)
                      ++|+||+.+|..|+.|++..|.|+|.++||..|.  ++.|||++++.|.|+|.++.+.     .+.++.++..+
T Consensus        89 ~vI~G~eeaL~gMk~Ge~~~~~Ip~~laYG~~g~--~~~Ipp~s~LiF~VeL~~i~~~-----~~~~~~~e~~~  155 (167)
T 1jvw_A           89 EVIKGWTEALQLMREGDRWRLFIPYDLAYGVTGG--GGMIPPYSPLEFDVELISIKDG-----GKGRTAEEVDE  155 (167)
T ss_dssp             GSCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCS--SSSSCTTCCEEEEEEEEEEGGG-----CCSCBHHHHHH
T ss_pred             chhHHHHHHHcCCCCCCEEEEEECchhhCCCCCC--CCCcCCCCeEEEEEEEEEEEcC-----CCCCCHHHHHH
Confidence            6999999999999999999999999999999987  5689999999999999999754     34455555433

>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens}

Probab=98.72  E-value=8.6e-09  Score=78.74  Aligned_cols=66  Identities=14%  Similarity=0.126  Sum_probs=51.7

Q ss_pred             ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCC-----------CCCCCCC------------------------C
Q 024531            2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGK-----------EGSFSFP------------------------N   46 (266)
Q Consensus         2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~-----------~g~~~~~------------------------~   46 (266)
                      +||.+ +||+|||.+|.+|+.||++.|+|+|.++||.           .|..++.                        .
T Consensus        62 ~lG~g-~vI~Gwd~gl~~M~~Ge~~~~~ipp~laYG~p~v~~~~r~~~~~~~p~~~~~~~~g~~~~~~~~~~g~~d~~~l  140 (165)
T 2lkn_A           62 IIGKK-FKLPVWETIVCTMREGEIAQFLCDIKHVVLYPLVAKSLRNIAVGKDPLEGQRHCCGVAQMREHSSLGHADLDAL  140 (165)
T ss_dssp             ESSSS-CSCSHHHHHHTTCCTTCEEEEECCHHHHSSHHHHHHHHTTGGGSSTTTTTCSCCSSCCSCCCCCCCCCSTTTHH
T ss_pred             EecCC-CccHHHHHHHhcCccCceEEEEECHHHhcCCcchhhhhhhccccCCCccccccceeeeeccccccccccccccc
Confidence            58988 8999999999999999999999999999982           1111000                        0


Q ss_pred             CCCCCceEEEEEEeeccccccC
Q 024531           47 VSPMADLVYEVVLIGFDETKEG   68 (266)
Q Consensus        47 ip~~~~~~~~i~l~~~~~~~~~   68 (266)
                      ++++++++|+|+|+++..+.++
T Consensus       141 i~~p~~L~FeIELl~Ve~P~ey  162 (165)
T 2lkn_A          141 QQNPQPLIFHMEMLKVESPGTY  162 (165)
T ss_dssp             HHSCCCCEEEEEEEEEECTTTC
T ss_pred             cCCCCCeEEEEEEEEEcCCccc
Confidence            2344789999999999887653

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.72  E-value=1.1e-08  Score=75.97  Aligned_cols=63  Identities=29%  Similarity=0.447  Sum_probs=57.0

Q ss_pred             ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCC-CCCCCCCCCCCceEEEEEEeecccccc
Q 024531            2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEG-SFSFPNVSPMADLVYEVVLIGFDETKE   67 (266)
Q Consensus         2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g-~~~~~~ip~~~~~~~~i~l~~~~~~~~   67 (266)
                      +||.+ .+|+||+.+|..|+.||+..|.|+|.++||..+ .  .+.||+++++.|.++|.++....+
T Consensus        63 ~lG~g-~~i~G~e~~L~gm~~Ge~~~v~ip~~~aYG~~~~~--~~~Ip~~~~l~f~vel~~v~~~~~  126 (135)
T 2d9f_A           63 TLGDC-DVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSR--SPYIPPHAALCLEVTLKTAVDRPD  126 (135)
T ss_dssp             ETTSC-CSCTTTTTTGGGSCTTCEEEEEECHHHHTCTTCCS--SSCCCTTCCEEEEEEEEEEESSCS
T ss_pred             EeCCC-ChhHHHHHHHhCCCCCCEEEEEEChhHccCcCCcC--CCccCCCCeEEEEEEEEEeecCCc
Confidence            57887 799999999999999999999999999999988 4  457999999999999999877654

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.69  E-value=1.9e-07  Score=80.27  Aligned_cols=146  Identities=10%  Similarity=0.001  Sum_probs=110.3

Q ss_pred             HHHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHH
Q 024531           77 EERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQ  156 (266)
Q Consensus        77 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~  156 (266)
                      ....-.+..+...|..++..|++++|+..+.+++...|....            .....++.++|.++...|++++|+..
T Consensus         8 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~------------~~~~~~~~~l~~~~~~~g~~~~A~~~   75 (373)
T 1hz4_A            8 REDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWF------------YSRIVATSVLGEVLHCKGELTRSLAL   75 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCH------------HHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCch------------hHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            334445667788899999999999999999999998875321            11334688999999999999999999


Q ss_pred             HHhHhcCCCCc------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--------CCHHHHHHHHHHHHHHHHHHHHH
Q 024531          157 CSLVLGEDENN------VKALFRRGKARAELGQTDAAREDFLKAGKFAP--------EDKSIARELRLLAEHEKAVYKKQ  222 (266)
Q Consensus       157 ~~~al~l~p~~------~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p--------~~~~~~~~l~~l~~~~~~~~~~~  222 (266)
                      +.+++.+.|..      ..+++.+|.++..+|++++|+..|++++.+.+        ....+...+..+....++..++.
T Consensus        76 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  155 (373)
T 1hz4_A           76 MQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAE  155 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHH
Confidence            99999876543      24578999999999999999999999999863        33455566777766666555444


Q ss_pred             HHHHhcccCCCCC
Q 024531          223 KEIYKGIFGPRPE  235 (266)
Q Consensus       223 ~~~~~k~~~~~~~  235 (266)
                      . .+.+.+...+.
T Consensus       156 ~-~~~~al~~~~~  167 (373)
T 1hz4_A          156 A-SARSGIEVLSS  167 (373)
T ss_dssp             H-HHHHHHHHTTT
T ss_pred             H-HHHHHHHHhhc
Confidence            3 45665544443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.69  E-value=1.9e-07  Score=69.42  Aligned_cols=97  Identities=13%  Similarity=0.001  Sum_probs=73.0

Q ss_pred             HhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHH----hhCHHHHHHHHHhHhcCC
Q 024531           89 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLK----LKRYEEAIGQCSLVLGED  164 (266)
Q Consensus        89 ~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~----~~~~~~A~~~~~~al~l~  164 (266)
                      .|..+...+.+++|+..|.++.+...  .                 .+++++|.+|..    .+++.+|+..++++.+. 
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~g~--~-----------------~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-   90 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACELNS--G-----------------NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL-   90 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHTTC--H-----------------HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcCCC--H-----------------HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC-
Confidence            66677777777778888888877631  1                 257888888887    77888888888888876 


Q ss_pred             CCchHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 024531          165 ENNVKALFRRGKARAE----LGQTDAAREDFLKAGKFAPEDKSIAREL  208 (266)
Q Consensus       165 p~~~~a~~~~g~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~~l  208 (266)
                       .++.+++++|.+|..    .+++++|+.+|+++.+.  .++.+...|
T Consensus        91 -g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l  135 (138)
T 1klx_A           91 -NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDACGIL  135 (138)
T ss_dssp             -TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC
T ss_pred             -CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHH
Confidence             578888888888888    88888888888888876  345554444

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.66  E-value=3.2e-07  Score=82.28  Aligned_cols=129  Identities=15%  Similarity=0.037  Sum_probs=90.1

Q ss_pred             HHHHHHHhHHHHhh-----ccHHHHHHHHHHHHhhhccchhhhh------ch---hHHHH-------HHHhhhhhhhhHH
Q 024531           83 ADRRKMDGNALFKE-----EKLEEAMQQYEMAIAYMGDDFMFQL------FG---KYRDM-------ALAVKNPCHLNMA  141 (266)
Q Consensus        83 ~~~~~~~g~~~~~~-----g~~~~A~~~y~~al~~~~~~~~~~~------~~---~~~~~-------~~~l~~~~~~n~a  141 (266)
                      ...+...|..+...     +++++|+..|.++++..+.......      .+   ...+-       ...-...+++++|
T Consensus       291 ~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg  370 (490)
T 2xm6_A          291 SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLG  370 (490)
T ss_dssp             HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            45566677777666     6777777777777765433221100      00   00000       0011244788899


Q ss_pred             HHHHH----hhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCC---CHHHHHHHHH
Q 024531          142 ACLLK----LKRYEEAIGQCSLVLGEDENNVKALFRRGKARAE----LGQTDAAREDFLKAGKFAPE---DKSIARELRL  210 (266)
Q Consensus       142 ~~~~~----~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~----~g~~~~A~~~~~~al~l~p~---~~~~~~~l~~  210 (266)
                      .+|..    .+++++|+..|+++++..  ++.+++++|.+|..    .+++++|..+|+++++.+|+   ++.+...+..
T Consensus       371 ~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~  448 (490)
T 2xm6_A          371 NALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKK  448 (490)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTT
T ss_pred             HHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHh
Confidence            99988    789999999999998864  68899999999998    89999999999999999854   7888877776


Q ss_pred             HHH
Q 024531          211 LAE  213 (266)
Q Consensus       211 l~~  213 (266)
                      +..
T Consensus       449 ~~~  451 (490)
T 2xm6_A          449 LTA  451 (490)
T ss_dssp             SCH
T ss_pred             cCH
Confidence            644

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A

Probab=98.63  E-value=4.6e-08  Score=84.64  Aligned_cols=62  Identities=31%  Similarity=0.441  Sum_probs=55.9

Q ss_pred             ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCC---CCCCCCCceEEEEEEeeccc
Q 024531            2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSF---PNVSPMADLVYEVVLIGFDE   64 (266)
Q Consensus         2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~---~~ip~~~~~~~~i~l~~~~~   64 (266)
                      ++|++ ++|+||+.+|.+|++||++.|+|.|.|+||..|+++.   +.||+++.+.|+++|.++..
T Consensus       172 ~~g~~-~v~~gl~~~l~~m~~GE~~~~~v~p~~~yg~~G~~~~~~~~~ip~~~~l~~~vel~~~~~  236 (356)
T 3jxv_A          172 TVKDG-HLCPALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKT  236 (356)
T ss_dssp             EGGGC-SSSHHHHHHHTTCCBTCEEEEEECGGGTTTTTCBCCCC--CCBCTTCCEEEEEEEEEEEC
T ss_pred             EeCCC-CcchHHHHHHhhCCCCCEEEEEEChHhhcCCCCCCcccccccCCCCcEEEEEEEEEEEec
Confidence            47888 7999999999999999999999999999999998542   36999999999999999865

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0

Probab=98.57  E-value=9.2e-08  Score=76.43  Aligned_cols=54  Identities=26%  Similarity=0.453  Sum_probs=50.5

Q ss_pred             ccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeecc
Q 024531            8 KEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD   63 (266)
Q Consensus         8 ~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~~   63 (266)
                      ++|+||+.+|..|+.|++..|.|+|.++||..|.  .+.|||+++++|+|+|+++.
T Consensus       165 ~vI~G~eeaL~gMk~Gek~~v~IPp~lAYG~~g~--~~~IPpnstLvFeVeLl~Ik  218 (219)
T 3oe2_A          165 SVISGWTSALQNMPTGAKWRLVIPSDQAYGAEGA--GDLIDPFTPLVFEIELIAVS  218 (219)
T ss_dssp             GSCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCB--TTTBCTTCCEEEEEEEEEEE
T ss_pred             chhHHHHHHHhCCCCCCEEEEEECchhcCCCCCC--CCCCCCCCeEEEEEEEEEEe
Confidence            6899999999999999999999999999999998  55799999999999999864

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.56  E-value=1.2e-06  Score=78.15  Aligned_cols=107  Identities=11%  Similarity=-0.029  Sum_probs=72.3

Q ss_pred             HHHHHhHHHHhhc---cHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHh----hCHHHHHHHH
Q 024531           85 RRKMDGNALFKEE---KLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKL----KRYEEAIGQC  157 (266)
Q Consensus        85 ~~~~~g~~~~~~g---~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~----~~~~~A~~~~  157 (266)
                      .+..+|..+...|   ++.+|+..|.++++..+....                 .++++|.+|...    +++++|+..|
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~-----------------~~~~Lg~~y~~g~~~~~d~~~A~~~~  240 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQ-----------------RVDSVARVLGDATLGTPDEKTAQALL  240 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHH-----------------HHHHHHHHHTCGGGSSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHH-----------------HHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence            4567888888888   999999999999998877544                 245666666544    4666666666


Q ss_pred             HhHhcCCCCchHHHHHHHHH-H--HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024531          158 SLVLGEDENNVKALFRRGKA-R--AELGQTDAAREDFLKAGKFAPEDKSIARELRLLAE  213 (266)
Q Consensus       158 ~~al~l~p~~~~a~~~~g~~-~--~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  213 (266)
                      +++.   |.++.+++++|.+ +  ...+++++|+.+|+++.+  ++++.+...|+.+..
T Consensus       241 ~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~  294 (452)
T 3e4b_A          241 EKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA--ADQPRAELLLGKLYY  294 (452)
T ss_dssp             HHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHH
T ss_pred             HHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHH
Confidence            6665   5666666666666 3  355666666666666654  335666666665543

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.55  E-value=4e-07  Score=79.67  Aligned_cols=136  Identities=8%  Similarity=-0.072  Sum_probs=88.0

Q ss_pred             HHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCC
Q 024531           85 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED  164 (266)
Q Consensus        85 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~  164 (266)
                      ...++|..+++.|+|.+|++.|.++++..|.....................++.++|.+|...|+|++|+.++.+++...
T Consensus         6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~   85 (434)
T 4b4t_Q            6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM   85 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            34577888999999999999999999998864332111100000111122356777777777777777777776665432


Q ss_pred             C----------------------------------------------CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 024531          165 E----------------------------------------------NNVKALFRRGKARAELGQTDAAREDFLKAGKFA  198 (266)
Q Consensus       165 p----------------------------------------------~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~  198 (266)
                      +                                              .....+.++|.+|..+|+|++|...++.++...
T Consensus        86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~  165 (434)
T 4b4t_Q           86 MQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREF  165 (434)
T ss_dssp             HTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHH
Confidence            2                                              124467788888889999999998888887752


Q ss_pred             ------CCCHHHHHHHHHHHHHHHHHHH
Q 024531          199 ------PEDKSIARELRLLAEHEKAVYK  220 (266)
Q Consensus       199 ------p~~~~~~~~l~~l~~~~~~~~~  220 (266)
                            |...++...+..+...++...+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (434)
T 4b4t_Q          166 KKLDDKPSLVDVHLLESKVYHKLRNLAK  193 (434)
T ss_dssp             TTSSCSTHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HhcccchhHHHHHHHHHHHHHHhCcHHH
Confidence                  2234555556666555554443

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.53  E-value=2.8e-07  Score=82.99  Aligned_cols=109  Identities=10%  Similarity=-0.045  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhc-----cchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHH
Q 024531           80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMG-----DDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAI  154 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~  154 (266)
                      +..+..+.++|..+...|+|++|+..|.++|....     +.+.              ....++|+|.+|..+|+|++|+
T Consensus       348 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~--------------~a~~l~nLa~~~~~~G~~~eA~  413 (490)
T 3n71_A          348 LYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQ--------------LGMAVMRAGLTNWHAGHIEVGH  413 (490)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHH--------------HHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHH--------------HHHHHHHHHHHHHHCCCHHHHH
Confidence            45677788899999999999999999999998753     2221              3446999999999999999999


Q ss_pred             HHHHhHhcC-----CCCc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 024531          155 GQCSLVLGE-----DENN---VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK  202 (266)
Q Consensus       155 ~~~~~al~l-----~p~~---~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~  202 (266)
                      ..+++|+++     -|++   .+..-.++.++..++.|++|...|+++.+..-+|.
T Consensus       414 ~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~  469 (490)
T 3n71_A          414 GMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQ  469 (490)
T ss_dssp             HHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            999999954     3444   45677899999999999999999999876443333

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A

Probab=98.52  E-value=1.4e-07  Score=78.80  Aligned_cols=60  Identities=37%  Similarity=0.580  Sum_probs=55.7

Q ss_pred             ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeeccc
Q 024531            2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDE   64 (266)
Q Consensus         2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~~~   64 (266)
                      +||.+ .+|+||+.+|..|+.||++.|.|+|.++||..|.  ++.||+++++.|.+++..+..
T Consensus       100 ~lG~g-~vi~G~e~aL~gm~~Ge~~~v~ipp~~aYG~~g~--~~~Ip~~~~lvf~Vel~~i~~  159 (280)
T 1q1c_A          100 DLGKG-EVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGS--PPKIPPNATLVFEVELFEFKG  159 (280)
T ss_dssp             ETTTT-SSCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCB--TTTBCTTCCEEEEEEEEEEEC
T ss_pred             EECCc-ChhHHHHHHHhcCCCCCEEEEEECcHHhCCCcCc--cCCCCCCCcEEEEEEeeeecc
Confidence            57888 7999999999999999999999999999999997  678999999999999998865

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.50  E-value=3.8e-07  Score=75.64  Aligned_cols=89  Identities=12%  Similarity=-0.001  Sum_probs=78.6

Q ss_pred             cHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHh-----hCHHHHHHHHHhHhcCCCCc-hHHH
Q 024531           98 KLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKL-----KRYEEAIGQCSLVLGEDENN-VKAL  171 (266)
Q Consensus        98 ~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~-----~~~~~A~~~~~~al~l~p~~-~~a~  171 (266)
                      ....|...++++++++|...               ...+|..+|..|.+.     |+.++|..+|++||+++|+. +.++
T Consensus       178 ~l~~A~a~lerAleLDP~~~---------------~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~  242 (301)
T 3u64_A          178 TVHAAVMMLERACDLWPSYQ---------------EGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHH  242 (301)
T ss_dssp             HHHHHHHHHHHHHHHCTTHH---------------HHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHH
T ss_pred             hHHHHHHHHHHHHHhCCCcc---------------cCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHH
Confidence            47889999999999999832               122699999999995     99999999999999999975 9999


Q ss_pred             HHHHHHHHH-cCCHHHHHHHHHHHHhhCCCC
Q 024531          172 FRRGKARAE-LGQTDAAREDFLKAGKFAPED  201 (266)
Q Consensus       172 ~~~g~~~~~-~g~~~~A~~~~~~al~l~p~~  201 (266)
                      +..|..+.. +|++++|.+.+++++..+|..
T Consensus       243 v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          243 ITYADALCIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence            999999988 599999999999999998873

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=98.47  E-value=2.5e-07  Score=73.77  Aligned_cols=53  Identities=36%  Similarity=0.540  Sum_probs=49.2

Q ss_pred             ccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeec
Q 024531            8 KEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF   62 (266)
Q Consensus         8 ~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~   62 (266)
                      ++|+||+.+|..|+.||+..|.|+|.++||..|.  .+.|||++++.|+++|.++
T Consensus       157 ~vi~G~eeaL~gM~~Ge~~~v~Ipp~~aYG~~g~--~~~IP~~s~LvF~VeL~~I  209 (209)
T 3uf8_A          157 MVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGA--AGVIPPNATLVFEVELLDV  209 (209)
T ss_dssp             SSCHHHHHHHTTCBTTCEEEEEECGGGTTTTTCB--TTTBCTTCCEEEEEEEEEC
T ss_pred             ccchhHHHHHhCCCCCCEEEEEECcHHhCCCCCC--CCCcCCCCeEEEEEEEEEC
Confidence            5899999999999999999999999999999998  5569999999999999863

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A*

Probab=98.47  E-value=2.9e-07  Score=73.47  Aligned_cols=55  Identities=22%  Similarity=0.334  Sum_probs=51.2

Q ss_pred             ccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeeccc
Q 024531            8 KEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDE   64 (266)
Q Consensus         8 ~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~~~   64 (266)
                      .+|+||+.+|..|+.|++..|.|+|.++||..|.  ++.|||+++++|+|+|.++.+
T Consensus       157 ~vI~G~eeaL~gMk~Gek~~v~IP~~laYG~~g~--~~~Ipp~stLiF~VeLl~v~~  211 (213)
T 1fd9_A          157 QVIPGWTEALQLMPAGSTWEIYVPSGLAYGPRSV--GGPIGPNETLIFKIHLISVKK  211 (213)
T ss_dssp             GSCHHHHHHHTTCCTTCEEEEEECGGGTTTTCCC--SSSCCTTCCEEEEEEEEEEEC
T ss_pred             chhhHHHHHHcCCCCCCEEEEEECchhccCccCC--CCCCCCCCeEEEEEEEEEEEc
Confidence            6899999999999999999999999999999886  568999999999999998754

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.46  E-value=2e-06  Score=63.73  Aligned_cols=94  Identities=14%  Similarity=-0.035  Sum_probs=82.3

Q ss_pred             hccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHH
Q 024531           96 EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRG  175 (266)
Q Consensus        96 ~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g  175 (266)
                      .+++++|+..|.++.+..+..                   +.  +|.+|...+..++|+..++++.+.  .++.+++++|
T Consensus         8 ~~d~~~A~~~~~~aa~~g~~~-------------------a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg   64 (138)
T 1klx_A            8 KKDLKKAIQYYVKACELNEMF-------------------GC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLG   64 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTT-------------------HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHcCCCHh-------------------hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHH
Confidence            367999999999999876332                   34  999999999999999999999987  6899999999


Q ss_pred             HHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024531          176 KARAE----LGQTDAAREDFLKAGKFAPEDKSIARELRLLAEH  214 (266)
Q Consensus       176 ~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  214 (266)
                      .+|..    .+++++|+.+|+++.+.  +++.+...|..+...
T Consensus        65 ~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~  105 (138)
T 1klx_A           65 DFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYA  105 (138)
T ss_dssp             HHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHC
Confidence            99999    89999999999999986  678888889988654

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.45  E-value=3.3e-06  Score=75.66  Aligned_cols=28  Identities=14%  Similarity=0.114  Sum_probs=14.6

Q ss_pred             HHHHHhHHHHh----hccHHHHHHHHHHHHhh
Q 024531           85 RRKMDGNALFK----EEKLEEAMQQYEMAIAY  112 (266)
Q Consensus        85 ~~~~~g~~~~~----~g~~~~A~~~y~~al~~  112 (266)
                      .+..+|..++.    .+++++|+..|.++++.
T Consensus        77 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~  108 (490)
T 2xm6_A           77 AEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK  108 (490)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence            34445555555    55555555555555543

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A

Probab=98.44  E-value=1.3e-07  Score=69.62  Aligned_cols=60  Identities=25%  Similarity=0.418  Sum_probs=52.2

Q ss_pred             ccCCCCccchhHHHHhhc------CCCCcEEEEEEecCcccCCCCCC---CCCCCCCCCceEEEEEEeec
Q 024531            2 VLGKEKKEMTGLAIGVSS------MKAGEHALLHVGWELGYGKEGSF---SFPNVSPMADLVYEVVLIGF   62 (266)
Q Consensus         2 ~lg~~~~~~~gl~~~l~~------m~~gE~~~~~i~~~~~~~~~g~~---~~~~ip~~~~~~~~i~l~~~   62 (266)
                      +||.+ .+|+||+.+|..      |+.||+..|.|+|.++||..+..   ..+.||+++++.|.++|.++
T Consensus        60 ~lG~~-~~i~G~~~~L~G~~~~~~m~~Ge~~~v~ip~~~aYG~~~~~~~~~~~~Ip~~~~l~f~vel~~i  128 (129)
T 1u79_A           60 RIGVG-EVIKGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  128 (129)
T ss_dssp             ETTSS-SSCHHHHHHHHCBTTBCCCBTTCEEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             EeCCC-CccHHHHHHhcccccccccCCCCEEEEEEChHHccCCCCCCccccCCcCCCCCeEEEEEEEEEe
Confidence            57887 799999999976      99999999999999999998852   12479999999999999864

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A

Probab=98.43  E-value=2.4e-07  Score=77.27  Aligned_cols=64  Identities=28%  Similarity=0.503  Sum_probs=56.1

Q ss_pred             ccCCCC--ccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCC-CCCCCCceEEEEEEeecccccc
Q 024531            2 VLGKEK--KEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFP-NVSPMADLVYEVVLIGFDETKE   67 (266)
Q Consensus         2 ~lg~~~--~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~-~ip~~~~~~~~i~l~~~~~~~~   67 (266)
                      +||.+.  ++|+||+.+|..|+.||.+.|+|+|.++||..|.  ++ .||+++++.|.++|.++.+..+
T Consensus       211 ~lG~g~~~~~i~G~e~~l~gmk~Ge~~~v~ip~~~~yG~~~~--~~~~IP~~~~l~f~V~L~~i~~~~~  277 (280)
T 1q1c_A          211 EIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGK--EKFQIPPNAELKYELHLKSFEKAKE  277 (280)
T ss_dssp             ETTCGGGGTCCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCB--GGGTBCTTCCEEEEEEEEEEECCCC
T ss_pred             EecCCcccccchhHHHHHhCCCCCcEEEEEEChhHcCCcCCC--ccCccCCCCeEEEEEEEEEEeCCCC
Confidence            578772  2699999999999999999999999999998886  23 5999999999999999988766

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A

Probab=98.42  E-value=1.9e-07  Score=80.68  Aligned_cols=62  Identities=34%  Similarity=0.447  Sum_probs=56.0

Q ss_pred             ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeeccc
Q 024531            2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDE   64 (266)
Q Consensus         2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~~~   64 (266)
                      ++|.+ ++|+||+.+|..|+.||+..|+|+|.++||..+....+.||+++++.|+++|.++.+
T Consensus       294 ~~G~g-~~i~G~e~~l~gm~~Ge~~~v~ip~~~aYG~~~~~~~~~Ip~~~~l~f~vel~~~~~  355 (356)
T 3jxv_A          294 KTDEE-AVIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSFVK  355 (356)
T ss_dssp             ETTTT-SSCHHHHHHHTTCCBTCEEEEEECGGGTTTTSCEESSSEECTTCCEEEEEEEEEEEC
T ss_pred             EECCC-ccchHHHHHHhCCCCCCEEEEEEChHHccCCCCcCCCCcCCcCCeEEEEEEEEEEEc
Confidence            57887 799999999999999999999999999999988644577999999999999998754

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.41  E-value=3.1e-06  Score=73.97  Aligned_cols=121  Identities=15%  Similarity=0.094  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhh--------------hhchhHHHH----------HH----
Q 024531           79 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMF--------------QLFGKYRDM----------AL----  130 (266)
Q Consensus        79 ~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~--------------~~~~~~~~~----------~~----  130 (266)
                      .......+...|..++..|+|++|+..|.+++...+.....              ...+.....          ..    
T Consensus        51 ~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  130 (434)
T 4b4t_Q           51 RNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKR  130 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSC
T ss_pred             hhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCc
Confidence            34445678899999999999999999999999877653211              001111110          00    


Q ss_pred             -HhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcC------CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 024531          131 -AVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE------DENNVKALFRRGKARAELGQTDAAREDFLKAGKFAP  199 (266)
Q Consensus       131 -~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p  199 (266)
                       .+...++.++|.+|...|+|.+|+..+.+++..      .|....++..+|.+|..+|+|++|...|++++.+.+
T Consensus       131 ~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~  206 (434)
T 4b4t_Q          131 VFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN  206 (434)
T ss_dssp             CSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence             122457889999999999999999999998754      344567899999999999999999999999998754

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.41  E-value=6.1e-06  Score=70.98  Aligned_cols=119  Identities=11%  Similarity=-0.038  Sum_probs=82.5

Q ss_pred             HHHHHHHhHHHHhhc---cHHHHHHHHHHHHhhhccchhhhh---------------chhHHHHHH------------Hh
Q 024531           83 ADRRKMDGNALFKEE---KLEEAMQQYEMAIAYMGDDFMFQL---------------FGKYRDMAL------------AV  132 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g---~~~~A~~~y~~al~~~~~~~~~~~---------------~~~~~~~~~------------~l  132 (266)
                      +-.++-+|..++..+   ++.+|+..|.+|++++|+....--               .........            ..
T Consensus       196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~  275 (372)
T 3ly7_A          196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNN  275 (372)
T ss_dssp             GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCc
Confidence            344556677776654   568999999999999998532200               000000000            11


Q ss_pred             hhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 024531          133 KNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK  202 (266)
Q Consensus       133 ~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~  202 (266)
                      ...++.-+|..+...|++++|+..+++|+.++|+ ..+|..+|.++...|++++|++.|.+|+.++|..+
T Consensus       276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence            1224455666777788899999999999888864 66778888888899999999999999999988764

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.39  E-value=5.5e-06  Score=81.83  Aligned_cols=141  Identities=12%  Similarity=0.098  Sum_probs=105.4

Q ss_pred             HHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcC
Q 024531           84 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE  163 (266)
Q Consensus        84 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l  163 (266)
                      ..+...|..++..|+|++|+..|.++-                         .|..+|.|+.++|+++.|++.+++|...
T Consensus      1196 ad~~~iGd~le~eg~YeeA~~~Y~kA~-------------------------ny~rLA~tLvkLge~q~AIEaarKA~n~ 1250 (1630)
T 1xi4_A         1196 AHIQQVGDRCYDEKMYDAAKLLYNNVS-------------------------NFGRLASTLVHLGEYQAAVDGARKANST 1250 (1630)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhhh-------------------------HHHHHHHHHHHhCCHHHHHHHHHHhCCH
Confidence            355679999999999999999999972                         2778999999999999999999988655


Q ss_pred             CC-------------------------CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH--HH
Q 024531          164 DE-------------------------NNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEH--EK  216 (266)
Q Consensus       164 ~p-------------------------~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~--~~  216 (266)
                      ++                         .+++.+..++..|...|.|++|+..|+.++.++|.+......|..+..+  -+
T Consensus      1251 ~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~pe 1330 (1630)
T 1xi4_A         1251 RTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQ 1330 (1630)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHH
Confidence            43                         2445666888899999999999999999999999999999888888665  33


Q ss_pred             HHHHHHHHHHhcccCCCC---CCcccchhHHHhHHHH
Q 024531          217 AVYKKQKEIYKGIFGPRP---EPKQKKNWLIIFWQLL  250 (266)
Q Consensus       217 ~~~~~~~~~~~k~~~~~~---~~~~~~~~~~~~~~~~  250 (266)
                      +..+..+. |..-.+.++   .+.....|....+.++
T Consensus      1331 klmEhlk~-f~~rini~k~~r~~e~~~lW~elv~LY~ 1366 (1630)
T 1xi4_A         1331 KMREHLEL-FWSRVNIPKVLRAAEQAHLWAELVFLYD 1366 (1630)
T ss_pred             HHHHHHHH-HHHhcccchHhHHHHHHHHHHHHHHHHH
Confidence            44444444 333334333   2233356665555443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.37  E-value=3.6e-06  Score=74.95  Aligned_cols=101  Identities=16%  Similarity=0.031  Sum_probs=69.0

Q ss_pred             HHHhHHHHhh----ccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHH-H--HHhhCHHHHHHHHHh
Q 024531           87 KMDGNALFKE----EKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAAC-L--LKLKRYEEAIGQCSL  159 (266)
Q Consensus        87 ~~~g~~~~~~----g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~-~--~~~~~~~~A~~~~~~  159 (266)
                      ...|..+...    +++++|+..|.++.   |.+..                 +++++|.+ +  ...+++++|+..|++
T Consensus       217 ~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~-----------------a~~~Lg~~~~~~~~~~d~~~A~~~~~~  276 (452)
T 3e4b_A          217 DSVARVLGDATLGTPDEKTAQALLEKIA---PGYPA-----------------SWVSLAQLLYDFPELGDVEQMMKYLDN  276 (452)
T ss_dssp             HHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTH-----------------HHHHHHHHHHHSGGGCCHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHH-----------------HHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence            5567776554    68999999999988   54433                 46677776 3  356677777777777


Q ss_pred             HhcCCCCchHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024531          160 VLGEDENNVKALFRRGKARAELG-----QTDAAREDFLKAGKFAPEDKSIARELRLLAE  213 (266)
Q Consensus       160 al~l~p~~~~a~~~~g~~~~~~g-----~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  213 (266)
                      +.+.  .++.+++++|.+|. .|     ++++|+.+|+++.   |+++.+...|+.+..
T Consensus       277 Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~  329 (452)
T 3e4b_A          277 GRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYR  329 (452)
T ss_dssp             HHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHH
T ss_pred             HHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHH
Confidence            7644  36777777777776 44     7777777777776   667777777766643

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.36  E-value=2.7e-06  Score=71.76  Aligned_cols=145  Identities=9%  Similarity=-0.065  Sum_probs=99.8

Q ss_pred             HHHHhHHHHhhccHHHHHHHHHHHHhhhc--cchhhh--------hchhH---HHHH---HHhh-------hhhhhhHHH
Q 024531           86 RKMDGNALFKEEKLEEAMQQYEMAIAYMG--DDFMFQ--------LFGKY---RDMA---LAVK-------NPCHLNMAA  142 (266)
Q Consensus        86 ~~~~g~~~~~~g~~~~A~~~y~~al~~~~--~~~~~~--------~~~~~---~~~~---~~l~-------~~~~~n~a~  142 (266)
                      +.-.|.++...|++++|++.+.++|...|  ......        ..+..   ...+   ....       ..+..+++.
T Consensus       103 ~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Lae  182 (310)
T 3mv2_B          103 LYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAE  182 (310)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHH
Confidence            45788889999999999999999977664  332210        01111   1111   2222       234566655


Q ss_pred             H--HHHhh--CHHHHHHHHHhHhcCCCC--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------CCCCHHHHH
Q 024531          143 C--LLKLK--RYEEAIGQCSLVLGEDEN--NVKALFRRGKARAELGQTDAAREDFLKAGKF----------APEDKSIAR  206 (266)
Q Consensus       143 ~--~~~~~--~~~~A~~~~~~al~l~p~--~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l----------~p~~~~~~~  206 (266)
                      +  .+..|  ++.+|...|+++....|+  .+..+++   +++.+|+|++|.+.++.++++          +|+|++++.
T Consensus       183 a~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~La  259 (310)
T 3mv2_B          183 SYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLA  259 (310)
T ss_dssp             HHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHH
T ss_pred             HHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHH
Confidence            5  66666  899999999999988887  3445555   899999999999999988887          588999997


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 024531          207 ELRLLAEHEKAVYKKQKEIYKGIFGPRPEP  236 (266)
Q Consensus       207 ~l~~l~~~~~~~~~~~~~~~~k~~~~~~~~  236 (266)
                      ++..+...+++   ...+++.++....|+.
T Consensus       260 N~i~l~~~lgk---~a~~l~~qL~~~~P~h  286 (310)
T 3mv2_B          260 NQITLALMQGL---DTEDLTNQLVKLDHEH  286 (310)
T ss_dssp             HHHHHHHHTTC---TTHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHhCh---HHHHHHHHHHHhCCCC
Confidence            77767665554   3345566666555543

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.35  E-value=2.7e-06  Score=75.03  Aligned_cols=103  Identities=15%  Similarity=0.119  Sum_probs=62.0

Q ss_pred             HHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCC
Q 024531           85 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED  164 (266)
Q Consensus        85 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~  164 (266)
                      .+...|+.++..|.|++|...|.++    +                     -+..+|.|+.++|+|++|++.+.++.  +
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a----~---------------------n~~~LA~~L~~Lg~yq~AVea~~KA~--~  176 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNV----S---------------------NFGRLASTLVHLGEYQAAVDGARKAN--S  176 (449)
T ss_dssp             -------------CTTTHHHHHHHT----T---------------------CHHHHHHHHHTTTCHHHHHHHHHHHT--C
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh----h---------------------hHHHHHHHHHHhccHHHHHHHHHHcC--C
Confidence            4455566666666666666666644    1                     14455555555555555555555552  2


Q ss_pred             C---------------------------CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024531          165 E---------------------------NNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEH  214 (266)
Q Consensus       165 p---------------------------~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  214 (266)
                      |                           .+++-...+..+|...|.+++|+..++.++.+++.+..+...|..+..+
T Consensus       177 ~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~k  253 (449)
T 1b89_A          177 TRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK  253 (449)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred             chhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHh
Confidence            2                           1222344566889999999999999999999999999999999988765

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=98.34  E-value=5.5e-06  Score=60.27  Aligned_cols=81  Identities=14%  Similarity=0.106  Sum_probs=70.2

Q ss_pred             hhhhHHHHHHHhhC---HHHHHHHHHhHhcCCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024531          136 CHLNMAACLLKLKR---YEEAIGQCSLVLGEDEN-NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL  211 (266)
Q Consensus       136 ~~~n~a~~~~~~~~---~~~A~~~~~~al~l~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l  211 (266)
                      +.++.|.|+.+...   ..+++..+...++.+|. .-+.+|.+|.+++++|+|++|..+.+.+|+.+|+|..+......+
T Consensus        42 t~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~I  121 (134)
T 3o48_A           42 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV  121 (134)
T ss_dssp             HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            57899999998775   55799999999988884 578999999999999999999999999999999999998877766


Q ss_pred             HHHHH
Q 024531          212 AEHEK  216 (266)
Q Consensus       212 ~~~~~  216 (266)
                      ..+..
T Consensus       122 e~ki~  126 (134)
T 3o48_A          122 EDKIQ  126 (134)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55444

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A

Probab=98.34  E-value=7.5e-07  Score=71.57  Aligned_cols=52  Identities=31%  Similarity=0.524  Sum_probs=48.2

Q ss_pred             ccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeec
Q 024531            8 KEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF   62 (266)
Q Consensus         8 ~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~   62 (266)
                      .+|+||+.+|..|+.|++..|.|+|.++||..|.  + .|||+++++|+|+|.++
T Consensus       172 ~vI~G~eeaL~gMk~Gek~~v~IP~~laYG~~g~--~-~IPp~stLiF~VeL~~i  223 (224)
T 1q6h_A          172 GVIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGV--P-GIPPNSTLVFDVELLDV  223 (224)
T ss_dssp             GSCHHHHHHGGGSCTTCEEEEEECGGGTTTTTCB--T-TBCTTCCEEEEEEEEEE
T ss_pred             CcchhHHHHHcCCCCCCEEEEEECchhhcCcCCC--C-CCCCCCEEEEEEEEEEe
Confidence            5899999999999999999999999999999887  3 49999999999999875

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.30  E-value=1.4e-05  Score=66.34  Aligned_cols=110  Identities=11%  Similarity=-0.070  Sum_probs=85.6

Q ss_pred             CHHHHHHHHHhHhcCCCC--chHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHHHHHHH
Q 024531          149 RYEEAIGQCSLVLGEDEN--NVKALFRRGKARAEL-----GQTDAAREDFLKAGKFAPED-KSIARELRLLAEHEKAVYK  220 (266)
Q Consensus       149 ~~~~A~~~~~~al~l~p~--~~~a~~~~g~~~~~~-----g~~~~A~~~~~~al~l~p~~-~~~~~~l~~l~~~~~~~~~  220 (266)
                      ....|...+++|+++||+  +..+|..+|..|...     |+.++|.++|++|++++|+. ..+...++..........+
T Consensus       178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~  257 (301)
T 3u64_A          178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA  257 (301)
T ss_dssp             HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred             hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence            378899999999999999  667999999999996     99999999999999999975 9998888876555434445


Q ss_pred             HHHHHHhcccCCCCCCccc----chhHHHhHHHHHHHHHHHh
Q 024531          221 KQKEIYKGIFGPRPEPKQK----KNWLIIFWQLLVSLVLGLF  258 (266)
Q Consensus       221 ~~~~~~~k~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~  258 (266)
                      .....+.+.+..++...|.    ...+..-.+|+..-+-++|
T Consensus       258 ~a~~~L~kAL~a~p~~~P~~~lan~~~q~eA~~LL~~~~d~F  299 (301)
T 3u64_A          258 GFDEALDRALAIDPESVPHNKLLVILSQKRARWLKAHVQDFF  299 (301)
T ss_dssp             HHHHHHHHHHHCCGGGCSSCHHHHHHHHHHHHHHHHTHHHHC
T ss_pred             HHHHHHHHHHcCCCCCCCChhHHHHHHHHHHHHHHHHhHHhc
Confidence            5556678888888875444    2234444556776666666

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.27  E-value=1.2e-05  Score=59.28  Aligned_cols=79  Identities=14%  Similarity=0.111  Sum_probs=68.7

Q ss_pred             hhhhHHHHHHHhhC---HHHHHHHHHhHhcCCC-CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024531          136 CHLNMAACLLKLKR---YEEAIGQCSLVLGEDE-NNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL  211 (266)
Q Consensus       136 ~~~n~a~~~~~~~~---~~~A~~~~~~al~l~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l  211 (266)
                      +.++.|.|+.+...   -.+++..+...+..+| ..-+.+|.+|..++++|+|++|..+.+.+|+.+|+|..+......+
T Consensus        41 t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~I  120 (144)
T 1y8m_A           41 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV  120 (144)
T ss_dssp             HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            57899999998775   5579999999999888 4678999999999999999999999999999999999998766655


Q ss_pred             HHH
Q 024531          212 AEH  214 (266)
Q Consensus       212 ~~~  214 (266)
                      ..+
T Consensus       121 e~~  123 (144)
T 1y8m_A          121 EDK  123 (144)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.24  E-value=1.3e-05  Score=67.48  Aligned_cols=117  Identities=11%  Similarity=0.057  Sum_probs=86.7

Q ss_pred             HHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCC--CchHHHHHHHHHHH
Q 024531          102 AMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDE--NNVKALFRRGKARA  179 (266)
Q Consensus       102 A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p--~~~~a~~~~g~~~~  179 (266)
                      |+..+++.+...+....                 ++..+|.++...|++++|+..|.+++..+|  .+..++...+.++.
T Consensus        85 a~~~l~~l~~~~~~~~~-----------------~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L  147 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPY-----------------ELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVAL  147 (310)
T ss_dssp             CCHHHHHTTTTSCCCHH-----------------HHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHH
Confidence            78888888876544322                 356889999999999999999999999987  99999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHH--HHHHH-HHHHHHHHHHhcccCCCCC
Q 024531          180 ELGQTDAAREDFLKAGKFAPE----DKSIARELRLL--AEHEK-AVYKKQKEIYKGIFGPRPE  235 (266)
Q Consensus       180 ~~g~~~~A~~~~~~al~l~p~----~~~~~~~l~~l--~~~~~-~~~~~~~~~~~k~~~~~~~  235 (266)
                      .+|+.+.|.+.+++..+.+|+    +..+...|...  .-..+ +..+..-..|..+....+.
T Consensus       148 ~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~  210 (310)
T 3mv2_B          148 LNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPT  210 (310)
T ss_dssp             HTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS
T ss_pred             HCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC
Confidence            999999999999999999983    33444444433  32233 1233445667777655543

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.24  E-value=7.6e-06  Score=56.41  Aligned_cols=70  Identities=20%  Similarity=0.179  Sum_probs=61.4

Q ss_pred             HHHHHHHhHHHHhhcc---HHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531           83 ADRRKMDGNALFKEEK---LEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  159 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~---~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~  159 (266)
                      +..+...|..++..++   ..+|...+.+++.++|++..                 ++..+|..++..|+|.+|+.++++
T Consensus         6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~r-----------------A~~~lg~~~~~~g~y~~Ai~~w~~   68 (93)
T 3bee_A            6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEA-----------------ALSLIANDHFISFRFQEAIDTWVL   68 (93)
T ss_dssp             HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHH
Confidence            5667788888876555   79999999999999999766                 689999999999999999999999


Q ss_pred             HhcCCCCchH
Q 024531          160 VLGEDENNVK  169 (266)
Q Consensus       160 al~l~p~~~~  169 (266)
                      +++.+|.++.
T Consensus        69 ~l~~~p~~~~   78 (93)
T 3bee_A           69 LLDSNDPNLD   78 (93)
T ss_dssp             HHTCCCTTCC
T ss_pred             HHhhCCCCcc
Confidence            9999998543

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.23  E-value=5.5e-06  Score=62.22  Aligned_cols=79  Identities=14%  Similarity=0.118  Sum_probs=65.7

Q ss_pred             HHHHHHHhHHHHhhc---cHHHHHHHHHHHHhhh-ccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHH
Q 024531           83 ADRRKMDGNALFKEE---KLEEAMQQYEMAIAYM-GDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS  158 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g---~~~~A~~~y~~al~~~-~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~  158 (266)
                      .+...+.|..+.+.+   ++++++..+...++.. |..                ...+++++|..|+++|+|++|..+++
T Consensus        32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~----------------~rd~lY~LAv~~~kl~~Y~~A~~y~~   95 (152)
T 1pc2_A           32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEE----------------QRDYVFYLAVGNYRLKEYEKALKYVR   95 (152)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHH----------------HHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccc----------------hHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            456677788888877   7889999999999987 532                22279999999999999999999999


Q ss_pred             hHhcCCCCchHHHHHHHHH
Q 024531          159 LVLGEDENNVKALFRRGKA  177 (266)
Q Consensus       159 ~al~l~p~~~~a~~~~g~~  177 (266)
                      ++|+++|+|..|..-+..+
T Consensus        96 ~lL~ieP~n~QA~~Lk~~i  114 (152)
T 1pc2_A           96 GLLQTEPQNNQAKELERLI  114 (152)
T ss_dssp             HHHHHCTTCHHHHHHHHHH
T ss_pred             HHHhcCCCCHHHHHHHHHH
Confidence            9999999999887655443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.06  E-value=9e-05  Score=73.42  Aligned_cols=107  Identities=16%  Similarity=0.082  Sum_probs=74.4

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccch-------hhhh---chhHHHHHHHhhhhhhhhHHHHHHHhhCHHH
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDF-------MFQL---FGKYRDMALAVKNPCHLNMAACLLKLKRYEE  152 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~-------~~~~---~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~  152 (266)
                      ...+.+.|..+.+.|+|++|++.|..|+...++..       .+..   .++..+.........+.+.|.++...|+|++
T Consensus      1134 ~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~Yee 1213 (1630)
T 1xi4_A         1134 PSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDA 1213 (1630)
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHH
Confidence            44556667777777777777777777776664421       0000   1112222233334457789999999999999


Q ss_pred             HHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024531          153 AIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKF  197 (266)
Q Consensus       153 A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  197 (266)
                      |+.+|.++        ..|.++|.+|.++|+|++|++.+++|...
T Consensus      1214 A~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n~ 1250 (1630)
T 1xi4_A         1214 AKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANST 1250 (1630)
T ss_pred             HHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCCH
Confidence            99999886        47889999999999999999999998443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.04  E-value=8.6e-05  Score=56.19  Aligned_cols=119  Identities=11%  Similarity=0.042  Sum_probs=88.4

Q ss_pred             HHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCC
Q 024531           85 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED  164 (266)
Q Consensus        85 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~  164 (266)
                      .+.+....++..+.|+.|+-....++.+..++...-.        ......++..+|.+++..++|..|...|++||.+.
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~s--------p~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~   93 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFS--------PPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQK   93 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCccccc--------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence            4667788899999999999999998887654332100        12234468899999999999999999999987431


Q ss_pred             ------C-------------------CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024531          165 ------E-------------------NNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLA  212 (266)
Q Consensus       165 ------p-------------------~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  212 (266)
                            |                   .+.+..|+++.||..++++++|+..++.+-. .-..+.+.-.|++++
T Consensus        94 k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A           94 KALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS-RQRTPKINMLLANLY  165 (167)
T ss_dssp             HCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred             HHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc-hhcCHHHHHHHHHHh
Confidence                  1                   1236889999999999999999999775421 224677777777653

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.79  E-value=7.2e-05  Score=66.17  Aligned_cols=88  Identities=11%  Similarity=0.054  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhc-----cchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHH
Q 024531           80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMG-----DDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAI  154 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~  154 (266)
                      +..+..+...|..+...|+|++|+..|.++|....     +.+.              ....++|+|.+|..+|++++|+
T Consensus       326 ~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~--------------~a~~l~nLa~~~~~~g~~~eA~  391 (429)
T 3qwp_A          326 IYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPV--------------RGVQVMKVGKLQLHQGMFPQAM  391 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHH--------------HHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChH--------------HHHHHHHHHHHHHhcCCHHHHH
Confidence            44566677889999999999999999999998752     2222              3446999999999999999999


Q ss_pred             HHHHhHhcC-----CCCch---HHHHHHHHHHHHc
Q 024531          155 GQCSLVLGE-----DENNV---KALFRRGKARAEL  181 (266)
Q Consensus       155 ~~~~~al~l-----~p~~~---~a~~~~g~~~~~~  181 (266)
                      ..+++|+++     -|+++   ..+.+++.+...+
T Consensus       392 ~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          392 KNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence            999999865     44444   4455666666543

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.68  E-value=0.00012  Score=64.68  Aligned_cols=70  Identities=7%  Similarity=-0.051  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhc-----cchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHH
Q 024531           80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMG-----DDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAI  154 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~  154 (266)
                      +..+..+..+|..+..+|+|++|+..|+++|....     +.+.              ....++|+|.+|..+|++++|+
T Consensus       337 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~--------------~a~~l~nLa~~~~~qg~~~eA~  402 (433)
T 3qww_A          337 VYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLN--------------VASMWLKLGRLYMGLENKAAGE  402 (433)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHH--------------HHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChH--------------HHHHHHHHHHHHHhccCHHHHH
Confidence            45667778899999999999999999999998752     2222              3446999999999999999999


Q ss_pred             HHHHhHhcC
Q 024531          155 GQCSLVLGE  163 (266)
Q Consensus       155 ~~~~~al~l  163 (266)
                      ..+++|+++
T Consensus       403 ~~~~~Al~i  411 (433)
T 3qww_A          403 KALKKAIAI  411 (433)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999865

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.67  E-value=2e-05  Score=69.51  Aligned_cols=105  Identities=16%  Similarity=0.072  Sum_probs=36.9

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhh-------hhchhHHHHHH---HhhhhhhhhHHHHHHHhhCHH
Q 024531           82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMF-------QLFGKYRDMAL---AVKNPCHLNMAACLLKLKRYE  151 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~-------~~~~~~~~~~~---~l~~~~~~n~a~~~~~~~~~~  151 (266)
                      ....+...+..+...|+|++|+..++.+++..++....       ...+...+...   .-....+.++|.++...|.|+
T Consensus        60 D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~ye  139 (449)
T 1b89_A           60 DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYD  139 (449)
T ss_dssp             -------------------------------------------------CHHHHTTTTTCC----------------CTT
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHH
Confidence            34466677777778889999999888888754331110       01111111100   011237889999999999999


Q ss_pred             HHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024531          152 EAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKA  194 (266)
Q Consensus       152 ~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a  194 (266)
                      +|..+|.++        ..+.++|.|+.++|+|++|++.++++
T Consensus       140 eA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA  174 (449)
T 1b89_A          140 AAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA  174 (449)
T ss_dssp             THHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc
Confidence            999999977        46889999999999999999999999

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=97.66  E-value=0.0014  Score=57.15  Aligned_cols=117  Identities=13%  Similarity=0.043  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhh-----chhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHH
Q 024531           80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQL-----FGKYRDMALAVKNPCHLNMAACLLKLKRYEEAI  154 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~  154 (266)
                      ......+...|......|+...|...+.+|+.+.........     .......+.+....+...++.++...|++.+|+
T Consensus       112 ~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~  191 (388)
T 2ff4_A          112 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI  191 (388)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            344556667777777789999999999999998754332221     123344566777778888999999999999999


Q ss_pred             HHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024531          155 GQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGK  196 (266)
Q Consensus       155 ~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~  196 (266)
                      ..+..++..+|.+..++..+-.++...|+..+|++.|+++-.
T Consensus       192 ~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          192 AELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999988755

>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1

Probab=97.60  E-value=5.1e-05  Score=54.21  Aligned_cols=52  Identities=21%  Similarity=0.319  Sum_probs=42.9

Q ss_pred             ccCCCCccchhHHHHhhcCCCCcEEEEEEe-cCcccCCCCCCCCCCCCCCCceEEEEEEeec
Q 024531            2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVG-WELGYGKEGSFSFPNVSPMADLVYEVVLIGF   62 (266)
Q Consensus         2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~-~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~   62 (266)
                      +||.+ ++|+||+.+|..|+.|+...|.|+ |.. ||..+.       +++++.|.+++.++
T Consensus        60 ~lG~g-~vi~G~ee~L~Gmk~Ge~~~v~i~fP~~-Yg~~~~-------~g~~l~F~V~l~~V  112 (113)
T 1hxv_A           60 TIGSN-SFIKGFETGLIAMKVNQKKTLALTFPSD-YHVKEL-------QSKPVTFEVVLKAI  112 (113)
T ss_dssp             EETSS-CSCTTHHHHHHTSCSSEEEEECCCCCTT-SSSSGG-------GSCCCEEEEEECCB
T ss_pred             EECCC-ChhHHHHHHHCCCCCCCEEEEEEeCchh-hCcCCC-------CCCEEEEEEEEEEE
Confidence            57888 799999999999999999999996 554 775442       45789999998765

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.40  E-value=0.00079  Score=48.66  Aligned_cols=76  Identities=14%  Similarity=0.084  Sum_probs=54.7

Q ss_pred             HHHHHhHHHHhhccH---HHHHHHHHHHHhhh-ccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhH
Q 024531           85 RRKMDGNALFKEEKL---EEAMQQYEMAIAYM-GDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  160 (266)
Q Consensus        85 ~~~~~g~~~~~~g~~---~~A~~~y~~al~~~-~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~a  160 (266)
                      ...+.|..+.+..+.   .+++..+...+... |..                ...+++.+|..++++|+|.+|..+++.+
T Consensus        37 ~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~----------------~Rd~lY~LAvg~yklg~Y~~A~~~~~~l  100 (126)
T 1nzn_A           37 TQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEE----------------QRDYVFYLAVGNYRLKEYEKALKYVRGL  100 (126)
T ss_dssp             HHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHH----------------HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcch----------------HHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            334445555555443   33777777766654 211                2337999999999999999999999999


Q ss_pred             hcCCCCchHHHHHHHH
Q 024531          161 LGEDENNVKALFRRGK  176 (266)
Q Consensus       161 l~l~p~~~~a~~~~g~  176 (266)
                      |+.+|+|..|.--...
T Consensus       101 L~~eP~n~QA~~Lk~~  116 (126)
T 1nzn_A          101 LQTEPQNNQAKELERL  116 (126)
T ss_dssp             HHHCTTCHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHH
Confidence            9999999887755443

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.33  E-value=0.0027  Score=46.10  Aligned_cols=74  Identities=12%  Similarity=0.069  Sum_probs=55.6

Q ss_pred             HHhHHHHhhc---cHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCC
Q 024531           88 MDGNALFKEE---KLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED  164 (266)
Q Consensus        88 ~~g~~~~~~g---~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~  164 (266)
                      +.|-.+.+..   +...++..+...+...|..                ...+++.+|..+.++|+|..|..+++.+|+.+
T Consensus        45 ~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~----------------~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e  108 (134)
T 3o48_A           45 NYAWGLIKSTDVNDERLGVKILTDIYKEAESR----------------RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE  108 (134)
T ss_dssp             HHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG----------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHhcCcch----------------hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence            3344444433   5667888888887766532                22378999999999999999999999999999


Q ss_pred             CCchHHHHHHHHH
Q 024531          165 ENNVKALFRRGKA  177 (266)
Q Consensus       165 p~~~~a~~~~g~~  177 (266)
                      |+|..|.--...+
T Consensus       109 P~N~QA~~Lk~~I  121 (134)
T 3o48_A          109 RNNKQVGALKSMV  121 (134)
T ss_dssp             TTCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHH
Confidence            9998876554443

>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A

Probab=97.28  E-value=0.00017  Score=54.45  Aligned_cols=39  Identities=23%  Similarity=0.365  Sum_probs=36.2

Q ss_pred             ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCCC
Q 024531            2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGS   41 (266)
Q Consensus         2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~   41 (266)
                      ++|.+ ++|+||+.+|..|+.||+..|.|+|..+||..+.
T Consensus        47 ~vG~g-~vi~G~eeaL~gm~~Ge~~~v~Ipp~~aYG~~~~   85 (157)
T 3pr9_A           47 FAGEG-QVLPGLDEAILEMDVGEEREVVLPPEKAFGKRDP   85 (157)
T ss_dssp             ETTSS-SSCHHHHHHHHHCCTTCEEEEEECGGGTTCCCCG
T ss_pred             EECCC-cHHHHHHHHHcCCCCCCEEEEEECcHHhcCCCCh
Confidence            57887 7999999999999999999999999999998775

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.19  E-value=0.0038  Score=45.91  Aligned_cols=74  Identities=12%  Similarity=0.053  Sum_probs=55.9

Q ss_pred             HHHhHHHHhhc---cHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcC
Q 024531           87 KMDGNALFKEE---KLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE  163 (266)
Q Consensus        87 ~~~g~~~~~~g---~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l  163 (266)
                      ++.|..+.+..   +..+++..+...+...|..                ...+++.+|..+.++|+|.+|..+++.+|+.
T Consensus        43 F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~----------------~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~  106 (144)
T 1y8m_A           43 FNYAWGLIKSTDVNDERLGVKILTDIYKEAESR----------------RRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  106 (144)
T ss_dssp             HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCST----------------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccc----------------hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            34444454443   4567888888888766543                2237899999999999999999999999999


Q ss_pred             CCCchHHHHHHHH
Q 024531          164 DENNVKALFRRGK  176 (266)
Q Consensus       164 ~p~~~~a~~~~g~  176 (266)
                      +|+|..|.--...
T Consensus       107 eP~n~QA~~Lk~~  119 (144)
T 1y8m_A          107 ERNNKQVGALKSM  119 (144)
T ss_dssp             CCCCHHHHHHHHH
T ss_pred             CCCcHHHHHHHHH
Confidence            9999887654443

>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1

Probab=97.18  E-value=0.0002  Score=53.79  Aligned_cols=39  Identities=23%  Similarity=0.460  Sum_probs=36.2

Q ss_pred             ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCCC
Q 024531            2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGS   41 (266)
Q Consensus         2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~   41 (266)
                      ++|.+ .+++||+.+|..|+.|++..|+|+|..+||..+.
T Consensus        48 ~~G~g-~vi~G~eeaL~gm~~Ge~~~v~ipp~~aYG~~~~   86 (151)
T 1ix5_A           48 VVGEG-QLIQGFEEAVLDMEVGDEKTVKIPAEKAYGNRNE   86 (151)
T ss_dssp             ETTTT-CSCHHHHHHHHTCCTTCCCEEEECTTTSSCSCCS
T ss_pred             EECCC-ChhHHHHHHHcCCCCCCEEEEEECcHHHCCCCCc
Confidence            57888 7999999999999999999999999999998765

>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*

Probab=97.12  E-value=0.00042  Score=52.44  Aligned_cols=39  Identities=26%  Similarity=0.374  Sum_probs=35.9

Q ss_pred             ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCCC
Q 024531            2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGS   41 (266)
Q Consensus         2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~   41 (266)
                      ++|.+ ++|+||+.+|..|+.|++..|.|+|..+||..+.
T Consensus        30 ~~G~g-~vipG~e~aL~Gm~~Ge~~~v~ipp~~aYG~~~~   68 (158)
T 3cgm_A           30 LHGHR-NLIPGLEEALEGREEGEAFQAHVPAEKAYGPHDP   68 (158)
T ss_dssp             ETTSS-SSCHHHHHHHTTCBTTCEEEEEECGGGTTCCCCG
T ss_pred             EECCC-CcChHHHHHHcCCCCCCEEEEEECcHHHcCCCCc
Confidence            57888 8999999999999999999999999999998664

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}

Probab=97.06  E-value=0.00051  Score=52.45  Aligned_cols=39  Identities=18%  Similarity=0.324  Sum_probs=35.8

Q ss_pred             ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCCC
Q 024531            2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGS   41 (266)
Q Consensus         2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~   41 (266)
                      ++|.+ ++|+||+.+|..|+.||+..|.|.|..+||....
T Consensus        58 ~lG~g-~vipG~eeaL~gm~~Ge~~~v~Ipp~~AYG~~~~   96 (169)
T 4dt4_A           58 RLGDA-SLSEGLEQHLLGLKVGDKTTFSLEPDAAFGVPSP   96 (169)
T ss_dssp             ETTSS-SSCHHHHHHHTTCCTTCEEEEEECGGGTTCCCCG
T ss_pred             EECCC-CccHHHHHHHcCCCCCCEEEEEEChHHhcCCCCh
Confidence            57888 7999999999999999999999999999997653

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.05  E-value=0.0025  Score=54.76  Aligned_cols=66  Identities=9%  Similarity=-0.021  Sum_probs=56.6

Q ss_pred             HHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCC
Q 024531           86 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDE  165 (266)
Q Consensus        86 ~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p  165 (266)
                      +...|..++..|+++.|+..+++|+.++|+. .                 ++..+|.++.-.|++++|+..+.+|+.++|
T Consensus       280 ~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~-~-----------------a~~llG~~~~~~G~~~eA~e~~~~AlrL~P  341 (372)
T 3ly7_A          280 YQIKAVSALVKGKTDESYQAINTGIDLEMSW-L-----------------NYVLLGKVYEMKGMNREAADAYLTAFNLRP  341 (372)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCCCH-H-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCH-H-----------------HHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            3445667777899999999999999998752 2                 477899999999999999999999999999


Q ss_pred             CchH
Q 024531          166 NNVK  169 (266)
Q Consensus       166 ~~~~  169 (266)
                      ....
T Consensus       342 ~~~t  345 (372)
T 3ly7_A          342 GANT  345 (372)
T ss_dssp             SHHH
T ss_pred             CcCh
Confidence            8753

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.05  E-value=0.0036  Score=47.32  Aligned_cols=95  Identities=14%  Similarity=0.122  Sum_probs=62.9

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhh-------chhHHHHHHHh--hhhhhhhHHHHHHHhhCHHH
Q 024531           82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQL-------FGKYRDMALAV--KNPCHLNMAACLLKLKRYEE  152 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~-------~~~~~~~~~~l--~~~~~~n~a~~~~~~~~~~~  152 (266)
                      .++.+...|+.+|..++|..|...|.+||.....-.....       ....... ..+  -..+.+.+|.||.+++++.+
T Consensus        62 ~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s-~~~~~e~Elkykia~C~~~l~~~~~  140 (167)
T 3ffl_A           62 KYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQS-QCLPSEIEVKYKLAECYTVLKQDKD  140 (167)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------------------CCCCHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCccc-ccccchHHHHHHHHHHHHHHCCHHH
Confidence            3667788999999999999999999999887643111100       0000000 001  12467889999999999999


Q ss_pred             HHHHHHhHhcCCCCchHHHHHHHHHH
Q 024531          153 AIGQCSLVLGEDENNVKALFRRGKAR  178 (266)
Q Consensus       153 A~~~~~~al~l~p~~~~a~~~~g~~~  178 (266)
                      |+..++.+-. .-..++.-..+|..|
T Consensus       141 Ai~~Le~Ip~-k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          141 AIAILDGIPS-RQRTPKINMLLANLY  165 (167)
T ss_dssp             HHHHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred             HHHHHhcCCc-hhcCHHHHHHHHHHh
Confidence            9998865422 235677777777655

>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}

Probab=97.02  E-value=0.00053  Score=51.52  Aligned_cols=39  Identities=26%  Similarity=0.373  Sum_probs=36.0

Q ss_pred             ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCCC
Q 024531            2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGS   41 (266)
Q Consensus         2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~   41 (266)
                      ++|.+ .+++||+.+|..|+.|++..|.|.|..+||..+.
T Consensus        40 ~~G~g-~vipg~e~aL~gm~~Ge~~~v~ipp~~aYG~~~~   78 (151)
T 2kr7_A           40 IIGTN-QIIAGLEKAVLKAQIGEWEEVVIAPEEAYGVYES   78 (151)
T ss_dssp             ETTCC-CSCHHHHHHHTTCCBTCEEEEEECGGGTTCSSCS
T ss_pred             EECCC-CccHHHHHHHcCCCCCCEEEEEEecHHHcCCCCc
Confidence            57888 7999999999999999999999999999998764

>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A

Probab=96.97  E-value=0.00056  Score=54.90  Aligned_cols=39  Identities=23%  Similarity=0.365  Sum_probs=36.1

Q ss_pred             ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCCC
Q 024531            2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGS   41 (266)
Q Consensus         2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~   41 (266)
                      ++|.+ ++|+||+.+|..|+.|+...|.|+|..+||..+.
T Consensus        47 ~lG~g-~vIpG~eeaL~Gm~vGek~~v~Ippe~AYGe~~~   85 (231)
T 3prb_A           47 FAGEG-QVLPGLDEAILEMDVGEEREVVLPPEKAFGKRDP   85 (231)
T ss_dssp             ETTSS-SSCHHHHHHHHTCCTTCEEEEEECGGGTTCCCCG
T ss_pred             EeCCC-cHHHHHHHHHcCCCCCCEEEEEeCcHHhcCCCCh
Confidence            57887 7999999999999999999999999999998774

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=96.94  E-value=0.0057  Score=57.10  Aligned_cols=135  Identities=10%  Similarity=-0.021  Sum_probs=96.1

Q ss_pred             HHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhh-CHHHHHHHHHhHhcCC
Q 024531           86 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK-RYEEAIGQCSLVLGED  164 (266)
Q Consensus        86 ~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~-~~~~A~~~~~~al~l~  164 (266)
                      +...++.....|..+.|...|.+|+...|....                .++...|..-.+.+ +++.|...|..+++..
T Consensus       437 Wi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~----------------~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~  500 (679)
T 4e6h_A          437 YCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTP----------------DIYLENAYIEYHISKDTKTACKVLELGLKYF  500 (679)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCT----------------HHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCh----------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC
Confidence            333444455678899999999999987443211                14556666666665 4899999999999999


Q ss_pred             CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCc
Q 024531          165 ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE---DKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPK  237 (266)
Q Consensus       165 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~---~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~~~  237 (266)
                      |+++..+...+......|+.+.|...|++++...|+   ...+...........+.. +..+..++++....|+.+
T Consensus       501 p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~-~~~~~v~~R~~~~~P~~~  575 (679)
T 4e6h_A          501 ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSL-NSVRTLEKRFFEKFPEVN  575 (679)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCS-HHHHHHHHHHHHHSTTCC
T ss_pred             CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCc
Confidence            999998888888888999999999999999999884   445555555554443332 344555666666555544

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=96.89  E-value=0.022  Score=53.23  Aligned_cols=147  Identities=6%  Similarity=-0.077  Sum_probs=97.7

Q ss_pred             HHhHHHHhhccHHHHHHHHHHHHhhhccchhh-----hhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531           88 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMF-----QLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  162 (266)
Q Consensus        88 ~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~  162 (266)
                      ..+......|+++.|...|.+++...+.....     ............-...++...+....+.|..+.|...+.+|++
T Consensus       383 ~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~  462 (679)
T 4e6h_A          383 SLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRR  462 (679)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34445556788888888888888764321100     0000000000111223566777777888999999999999998


Q ss_pred             C-CCCchHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 024531          163 E-DENNVKALFRRGKARAELG-QTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPE  235 (266)
Q Consensus       163 l-~p~~~~a~~~~g~~~~~~g-~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~  235 (266)
                      . .+.....|...|..-...+ +++.|...|+++++..|+++.............++ ....+..|.+.+...+.
T Consensus       463 ~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~-~~~AR~lferal~~~~~  536 (679)
T 4e6h_A          463 LKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNE-ESQVKSLFESSIDKISD  536 (679)
T ss_dssp             TGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHTTTSSS
T ss_pred             hcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcCC
Confidence            8 4455677777777776765 49999999999999999999988666665444433 45667788888866553

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}

Probab=96.88  E-value=0.00092  Score=51.22  Aligned_cols=39  Identities=21%  Similarity=0.364  Sum_probs=35.9

Q ss_pred             ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCCC
Q 024531            2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGS   41 (266)
Q Consensus         2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~   41 (266)
                      ++|.+ .+|+||+.+|..|+.|++..|+|+|..+||..+.
T Consensus        35 ~lG~g-~vipG~eeaL~Gm~~Ge~~~v~ippe~aYG~~~~   73 (171)
T 2k8i_A           35 LHGHG-SLISGLETALEGHEVGDKFDVAVGANDAYGQYDE   73 (171)
T ss_dssp             ETTSC-SSCSHHHHHHTTCCTTCEEEEEEETTTSSCCCCT
T ss_pred             EECCC-CcchHHHHHHcCCCCCCEEEEEECcHHhcCCCCh
Confidence            57887 7999999999999999999999999999998754

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}

Probab=96.77  E-value=0.00082  Score=52.62  Aligned_cols=39  Identities=21%  Similarity=0.364  Sum_probs=36.0

Q ss_pred             ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCCC
Q 024531            2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGS   41 (266)
Q Consensus         2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~   41 (266)
                      ++|.+ ++|+||+.+|..|+.|++..|+|+|..+||..+.
T Consensus        35 ~lG~g-~vipG~eeaL~Gm~vGe~~~v~Ippe~aYGe~~~   73 (196)
T 2kfw_A           35 LHGHG-SLISGLETALEGHEVGDKFDVAVGANDAYGQYDE   73 (196)
T ss_dssp             ESSSS-SSCHHHHHHHSSSCTTCEEEEECSTTTTSSCCCT
T ss_pred             EECCC-CcchHHHHHHcCCCCCCEEEEEeCcHHhcCCCCh
Confidence            57888 7999999999999999999999999999998664

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.33  E-value=0.019  Score=53.99  Aligned_cols=59  Identities=12%  Similarity=0.055  Sum_probs=53.4

Q ss_pred             hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024531          136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKA  194 (266)
Q Consensus       136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a  194 (266)
                      ++...+.-++..|+|+.|+..+++|+...|.....|+.++.||..+|+|+.|+-.++.+
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            44455777778899999999999999999999999999999999999999999888776

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.29  E-value=0.097  Score=38.86  Aligned_cols=96  Identities=9%  Similarity=0.048  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHH
Q 024531          100 EEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARA  179 (266)
Q Consensus       100 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~  179 (266)
                      +.-++.|.+|+...|... ...        -.-.+.++.+.|.- ...++.++|...|+.++.+....++.|...|+--.
T Consensus        36 ~rlrd~YerAia~~Pp~k-~~~--------wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEi  105 (161)
T 4h7y_A           36 NKLIGRYSQAIEALPPDK-YGQ--------NESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFEL  105 (161)
T ss_dssp             HHHHHHHHHHHHHSCGGG-GTT--------CHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCccc-ccc--------HHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            788899999999988753 111        11123345555533 56799999999999999887788899999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHH
Q 024531          180 ELGQTDAAREDFLKAGKFAPEDKSIA  205 (266)
Q Consensus       180 ~~g~~~~A~~~~~~al~l~p~~~~~~  205 (266)
                      .+|+...|.+.+.+++.+.|...+..
T Consensus       106 Rqgnl~kARkILg~AiG~~~k~~~~l  131 (161)
T 4h7y_A          106 SQGNVKKSKQLLQKAVERGAVPLEML  131 (161)
T ss_dssp             HTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred             HcccHHHHHHHHHHHhccCCCcHHHH
Confidence            99999999999999999999866554

>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5

Probab=96.01  E-value=0.0083  Score=52.89  Aligned_cols=56  Identities=21%  Similarity=0.347  Sum_probs=47.7

Q ss_pred             ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeecccc
Q 024531            2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDET   65 (266)
Q Consensus         2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~~~~   65 (266)
                      ++|.+ .+|+||+.+|..|+.|+...|.+++..+||..+.       ++.++.|.+.+..+...
T Consensus       188 ~lG~g-~~ipgfee~L~G~k~Ge~~~v~v~~~~~yg~~~l-------ag~~~~F~V~v~~v~~~  243 (432)
T 1w26_A          188 AMGQG-RMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAENL-------KGKAAKFAINLKKVEER  243 (432)
T ss_dssp             ETTSC-CSCTTHHHHSSSCCSSCEEEEEEECCTTCSCTTT-------SSCEEEEEEECCEECCE
T ss_pred             EeCCC-CcchHHHHHhCCCCCCCEEEEEECCchhhCCCCC-------CCceEEEEEEEEEEecc
Confidence            58888 7999999999999999999999999998886543       45689999998887553

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=95.97  E-value=0.064  Score=46.53  Aligned_cols=99  Identities=12%  Similarity=-0.072  Sum_probs=77.4

Q ss_pred             HHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCC---
Q 024531           88 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED---  164 (266)
Q Consensus        88 ~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~---  164 (266)
                      .+|..++..|+|.+|+..+.+.+........           ......++......|..++++.++...+.+|....   
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd-----------~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai  172 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDD-----------KNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAI  172 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSC-----------THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhcccc-----------chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccC
Confidence            6799999999999999999999887654211           23356678889999999999999999998886432   


Q ss_pred             -C-Cch--HHHHHHHHHHH-HcCCHHHHHHHHHHHHhh
Q 024531          165 -E-NNV--KALFRRGKARA-ELGQTDAAREDFLKAGKF  197 (266)
Q Consensus       165 -p-~~~--~a~~~~g~~~~-~~g~~~~A~~~~~~al~l  197 (266)
                       | ...  .....-|..++ ..++|..|..+|-.+++-
T Consensus       173 ~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~  210 (394)
T 3txn_A          173 YCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEG  210 (394)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence             1 122  33445689999 899999999999999753

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=95.90  E-value=0.14  Score=38.87  Aligned_cols=96  Identities=13%  Similarity=0.117  Sum_probs=70.7

Q ss_pred             HHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh--cC--
Q 024531           88 MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL--GE--  163 (266)
Q Consensus        88 ~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al--~l--  163 (266)
                      -.+..+|-.|+|..|+-+..+   +  +                 ...+.+.-+.||.++++|..|+...+..|  +.  
T Consensus        38 L~~I~LyyngEY~R~Lf~L~~---l--N-----------------T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~   95 (242)
T 3kae_A           38 LMSIVLYLNGEYTRALFHLHK---L--N-----------------TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVER   95 (242)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHT---C--C-----------------BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBC
T ss_pred             hhhhhhhhcchHhHHHHHHHh---c--c-----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            356777788888777765432   1  1                 11235668999999999999999999998  32  


Q ss_pred             -------------CCCchHHHH-HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 024531          164 -------------DENNVKALF-RRGKARAELGQTDAAREDFLKAGKFAPEDKSIA  205 (266)
Q Consensus       164 -------------~p~~~~a~~-~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~  205 (266)
                                   ||.+-+.++ .+|..+.+.|+-++|+.+|......+|--+.+.
T Consensus        96 d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vE  151 (242)
T 3kae_A           96 DPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVE  151 (242)
T ss_dssp             CCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             CcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHH
Confidence                         233444444 579999999999999999999998887644444

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=95.88  E-value=0.053  Score=48.61  Aligned_cols=79  Identities=6%  Similarity=-0.073  Sum_probs=70.4

Q ss_pred             hhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024531          135 PCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAE  213 (266)
Q Consensus       135 ~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  213 (266)
                      .++..+|....-...+..|..+|.+|+.+.|++...|..+|.+....|+.-+|+-+|.+++......+.+..+|..+..
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~  231 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS  231 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence            3566778777777889999999999999999999999999999999999999999999999987778888888886643

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=95.75  E-value=0.12  Score=42.16  Aligned_cols=62  Identities=16%  Similarity=0.040  Sum_probs=54.9

Q ss_pred             HHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchH
Q 024531           91 NALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVK  169 (266)
Q Consensus        91 ~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~  169 (266)
                      ..+++.|+.++|+......|+..|.+..                 +...+-..+.-.|+|++|...++.+.+++|....
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~P~da~-----------------~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~   66 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKASPKDAS-----------------LRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP   66 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHH-----------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCcCHH-----------------HHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence            4678899999999999999999999876                 4677788888899999999999999999997643

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=95.54  E-value=0.71  Score=41.16  Aligned_cols=141  Identities=12%  Similarity=0.043  Sum_probs=90.9

Q ss_pred             HHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhh----hc---hhHHHHHH----------------HhhhhhhhhHHH
Q 024531           86 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQ----LF---GKYRDMAL----------------AVKNPCHLNMAA  142 (266)
Q Consensus        86 ~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~----~~---~~~~~~~~----------------~l~~~~~~n~a~  142 (266)
                      +..-+..+...|+.+.|...|.+|+.. |.+...-    ..   ++..+.+.                .-...++...+.
T Consensus       216 W~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~  294 (493)
T 2uy1_A          216 YFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLN  294 (493)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHH
Confidence            444566667789999999999999999 8764221    00   11100110                001234566666


Q ss_pred             HHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 024531          143 CLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELG-QTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKK  221 (266)
Q Consensus       143 ~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g-~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~  221 (266)
                      ...+.++.+.|...+.+| ...+.....+...|..-...+ +.+.|...|+.+++..|+++.............+. ...
T Consensus       295 ~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~-~~~  372 (493)
T 2uy1_A          295 YVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGD-EEN  372 (493)
T ss_dssp             HHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHH
T ss_pred             HHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC-HHH
Confidence            666788999999999999 433334555655666666566 69999999999999999988765444443322222 234


Q ss_pred             HHHHHhcc
Q 024531          222 QKEIYKGI  229 (266)
Q Consensus       222 ~~~~~~k~  229 (266)
                      .+..|.++
T Consensus       373 aR~l~er~  380 (493)
T 2uy1_A          373 ARALFKRL  380 (493)
T ss_dssp             HHHHHHHS
T ss_pred             HHHHHHHH
Confidence            45667665

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.45  E-value=0.11  Score=45.71  Aligned_cols=100  Identities=8%  Similarity=-0.125  Sum_probs=78.7

Q ss_pred             HHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcC--
Q 024531           86 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE--  163 (266)
Q Consensus        86 ~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l--  163 (266)
                      +..+|..++..|+++.|++.|.++.........              .+.++.+...+++..++|..+..+++++-.+  
T Consensus       134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~--------------kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~  199 (429)
T 4b4t_R          134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGA--------------KIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIE  199 (429)
T ss_dssp             CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCS--------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHH--------------HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhh
Confidence            457899999999999999999999887765432              3446888888999999999999999998644  


Q ss_pred             -CCC-c--hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 024531          164 -DEN-N--VKALFRRGKARAELGQTDAAREDFLKAGKFAP  199 (266)
Q Consensus       164 -~p~-~--~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p  199 (266)
                       .++ .  .+.....|..+...++|.+|...|..++....
T Consensus       200 ~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~  239 (429)
T 4b4t_R          200 KGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFT  239 (429)
T ss_dssp             TCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred             cCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence             221 1  13444568888999999999999998876544

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=95.37  E-value=0.14  Score=41.80  Aligned_cols=68  Identities=16%  Similarity=0.078  Sum_probs=60.5

Q ss_pred             HHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024531          142 ACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELR  209 (266)
Q Consensus       142 ~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~  209 (266)
                      ..+++.|..++|+..+...++-+|.|......+-+.+.-.|+|+.|..-++-+.+++|+....-..+.
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr   72 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLR   72 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999765554444

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.79  E-value=0.12  Score=48.67  Aligned_cols=62  Identities=23%  Similarity=0.284  Sum_probs=55.4

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  161 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al  161 (266)
                      ...+..++..+..+|+|+-|+..-++|+...|.+..                 .+..+|.||..+|+|+.|+-.++..-
T Consensus       337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~-----------------tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          337 SDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFE-----------------SWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhH-----------------HHHHHHHHHHHhccHHHHHHHHhcCC
Confidence            345677888899999999999999999999999877                 59999999999999999999888763

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.44  E-value=0.82  Score=40.23  Aligned_cols=105  Identities=11%  Similarity=-0.083  Sum_probs=76.9

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531           82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  161 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al  161 (266)
                      .+..-..++..++..|+|.+|.........-.-...+           ....+..+......|...++|.+|...++++.
T Consensus       136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~-----------~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~  204 (445)
T 4b4t_P          136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSME-----------MSEKIQFILEQMELSILKGDYSQATVLSRKIL  204 (445)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSC-----------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhccc-----------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            3455567899999999999999999887542211111           22245567788899999999999999999874


Q ss_pred             ----cCC-CCch--HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024531          162 ----GED-ENNV--KALFRRGKARAELGQTDAAREDFLKAGKF  197 (266)
Q Consensus       162 ----~l~-p~~~--~a~~~~g~~~~~~g~~~~A~~~~~~al~l  197 (266)
                          ... |...  ..+...|..+...++|.+|-.+|..++..
T Consensus       205 ~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          205 KKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence                222 2222  34556799999999999999999988764

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=93.61  E-value=1.3  Score=39.43  Aligned_cols=109  Identities=11%  Similarity=-0.099  Sum_probs=78.3

Q ss_pred             HHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhh-CHHHHHHHHHhHhcCC
Q 024531           86 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLK-RYEEAIGQCSLVLGED  164 (266)
Q Consensus        86 ~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~-~~~~A~~~~~~al~l~  164 (266)
                      +..-+....+.++.+.|...|.+| . .|....                .++...|..-...+ +.+.|...++.+++..
T Consensus       289 w~~y~~~~~r~~~~~~AR~i~~~A-~-~~~~~~----------------~v~i~~A~lE~~~~~d~~~ar~ife~al~~~  350 (493)
T 2uy1_A          289 RINHLNYVLKKRGLELFRKLFIEL-G-NEGVGP----------------HVFIYCAFIEYYATGSRATPYNIFSSGLLKH  350 (493)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHH-T-TSCCCH----------------HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHh-h-CCCCCh----------------HHHHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence            334444555677899999999999 3 333111                13555566566666 6999999999999999


Q ss_pred             CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 024531          165 ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEK  216 (266)
Q Consensus       165 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~  216 (266)
                      |+++..+...+.....+|+.+.|...|+++    +....+...........+
T Consensus       351 ~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G  398 (493)
T 2uy1_A          351 PDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVG  398 (493)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHS
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCC
Confidence            998887777788788999999999999998    345666666665544433

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=93.20  E-value=0.59  Score=41.79  Aligned_cols=80  Identities=11%  Similarity=-0.131  Sum_probs=68.6

Q ss_pred             HHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcC
Q 024531           84 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE  163 (266)
Q Consensus        84 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l  163 (266)
                      ..+..+|+..-....+..|...|.+|+.+.|....                 .|+.+|......|+.-+|+-+|-+++..
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~-----------------~~nqLavla~~~~~~l~a~y~y~rsl~~  215 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQ-----------------PYNQLAILASSKGDHLTTIFYYCRSIAV  215 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCc-----------------hHHHHHHHHhcccccHHHHHHHHHHHhc
Confidence            35567899988889999999999999999999665                 5999999999999999999999999988


Q ss_pred             CCCchHHHHHHHHHHHH
Q 024531          164 DENNVKALFRRGKARAE  180 (266)
Q Consensus       164 ~p~~~~a~~~~g~~~~~  180 (266)
                      ....+.+.-++...+..
T Consensus       216 ~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          216 KFPFPAASTNLQKALSK  232 (497)
T ss_dssp             SBCCHHHHHHHHHHHHH
T ss_pred             CCCChhHHHHHHHHHHH
Confidence            77777777777766654

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=93.18  E-value=1.7  Score=38.79  Aligned_cols=97  Identities=7%  Similarity=-0.070  Sum_probs=74.2

Q ss_pred             HHHHHhHHHHhhccHHHHHHHHHHHHhh--hccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531           85 RRKMDGNALFKEEKLEEAMQQYEMAIAY--MGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  162 (266)
Q Consensus        85 ~~~~~g~~~~~~g~~~~A~~~y~~al~~--~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~  162 (266)
                      .+...-..+.+.|++++|...|.+....  .|+..                  .|+.+-.+|.+.|++++|...+....+
T Consensus       107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~------------------tyn~lI~~~~~~g~~~~A~~l~~~M~~  168 (501)
T 4g26_A          107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLR------------------SYGPALFGFCRKGDADKAYEVDAHMVE  168 (501)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc------------------eehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            3445556788889999999999887664  23322                  366777888899999999999988764


Q ss_pred             C--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCC
Q 024531          163 E--DENNVKALFRRGKARAELGQTDAAREDFLKAGKF--APE  200 (266)
Q Consensus       163 l--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~  200 (266)
                      .  .| +...|..+-.++...|+.++|.+.|++..+.  .|+
T Consensus       169 ~G~~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps  209 (501)
T 4g26_A          169 SEVVP-EEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVS  209 (501)
T ss_dssp             TTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBC
T ss_pred             cCCCC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcC
Confidence            4  44 4567778888999999999999999987663  455

>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A

Probab=93.08  E-value=0.036  Score=48.15  Aligned_cols=56  Identities=13%  Similarity=0.236  Sum_probs=43.9

Q ss_pred             ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeecccc
Q 024531            2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDET   65 (266)
Q Consensus         2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~~~~   65 (266)
                      +||.+ .+|+||+.+|..|+.|+...|.++..-.|+..+       .++.++.|.+.+..+...
T Consensus       191 ~lG~g-~~ipgfee~L~Gmk~Ge~~~v~v~fp~dy~~~~-------laGk~~~F~V~v~~i~~~  246 (392)
T 1t11_A          191 EMGAG-RMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAEN-------LKGKAAKFAIKVNKVEAR  246 (392)
T ss_dssp             ETTSC-CBSTTSGGGTTTCCSSCCCCEEEECCTTCSCTT-------TSSCEEEECCCEEEEEEE
T ss_pred             EecCC-CcchhHHHHhCCCCCCCEEEEEEeCccccccCC-------CCCCeEEEEEEEEEEEcC
Confidence            58988 899999999999999999999997333455322       245788999998887553

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=92.81  E-value=2.1  Score=38.23  Aligned_cols=120  Identities=13%  Similarity=0.012  Sum_probs=82.2

Q ss_pred             ccHHHHHHHHHHHHhh--hccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcC--CCCchHHHH
Q 024531           97 EKLEEAMQQYEMAIAY--MGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE--DENNVKALF  172 (266)
Q Consensus        97 g~~~~A~~~y~~al~~--~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l--~p~~~~a~~  172 (266)
                      +..+.|.+.|.+....  .|+.                  ..|+.+-.+|.+.|++++|...+++....  .| +...|.
T Consensus        84 ~~l~~A~~lf~~M~~~G~~Pd~------------------~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~tyn  144 (501)
T 4g26_A           84 PGLSRGFDIFKQMIVDKVVPNE------------------ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQP-RLRSYG  144 (501)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCH------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHH
T ss_pred             chHHHHHHHHHHHHHhCCCCCH------------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ccceeh
Confidence            4467777777766543  2332                  24778889999999999999999987654  44 567788


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCc
Q 024531          173 RRGKARAELGQTDAAREDFLKAGKF--APEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPK  237 (266)
Q Consensus       173 ~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~~~  237 (266)
                      .+-.+|...|+.++|.+.|+...+.  .|+ ......|-....+.++.. +...++.+|-+....++
T Consensus       145 ~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd-~~ty~~Li~~~~~~g~~d-~A~~ll~~Mr~~g~~ps  209 (501)
T 4g26_A          145 PALFGFCRKGDADKAYEVDAHMVESEVVPE-EPELAALLKVSMDTKNAD-KVYKTLQRLRDLVRQVS  209 (501)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHTSSBC
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhhCCCHH-HHHHHHHHHHHhCCCcC
Confidence            8888999999999999999998874  455 444444444444444443 34455677754444433

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=91.75  E-value=1.7  Score=37.45  Aligned_cols=79  Identities=16%  Similarity=0.055  Sum_probs=60.7

Q ss_pred             HHHHHHHhhCHHHHHHHHHhHhcCCCCc----------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024531          140 MAACLLKLKRYEEAIGQCSLVLGEDENN----------------------VKALFRRGKARAELGQTDAAREDFLKAGKF  197 (266)
Q Consensus       140 ~a~~~~~~~~~~~A~~~~~~al~l~p~~----------------------~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  197 (266)
                      .|......|+...|...+.+|+.+....                      ..+...++.++...|++.+|+..+..++..
T Consensus       121 ~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~  200 (388)
T 2ff4_A          121 AGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE  200 (388)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            3444445688999999999999874311                      235556788899999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHH
Q 024531          198 APEDKSIARELRLLAEHEKAV  218 (266)
Q Consensus       198 ~p~~~~~~~~l~~l~~~~~~~  218 (266)
                      +|-+..++..+..+....++.
T Consensus       201 ~P~~E~~~~~lm~al~~~Gr~  221 (388)
T 2ff4_A          201 HPYREPLWTQLITAYYLSDRQ  221 (388)
T ss_dssp             STTCHHHHHHHHHHHHTTTCH
T ss_pred             CCCCHHHHHHHHHHHHHcCCH
Confidence            999998888888775544433

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=90.88  E-value=0.73  Score=30.36  Aligned_cols=35  Identities=26%  Similarity=0.230  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhh
Q 024531           79 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYM  113 (266)
Q Consensus        79 ~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~  113 (266)
                      ....+-.+..+|...-+.|+|.+|+..|..+|+..
T Consensus         7 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l   41 (83)
T 2v6y_A            7 LEDMARKYAILAVKADKEGKVEDAITYYKKAIEVL   41 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            56678888899999999999999999999999875

>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A

Probab=90.62  E-value=6.7  Score=32.75  Aligned_cols=118  Identities=11%  Similarity=-0.062  Sum_probs=67.7

Q ss_pred             HHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhh-hHHHHHHHh-------hCHHHHHH-
Q 024531           85 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHL-NMAACLLKL-------KRYEEAIG-  155 (266)
Q Consensus        85 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~-n~a~~~~~~-------~~~~~A~~-  155 (266)
                      .....|-.++..|+|.+|+..|..+|...|-....  ..++.++.+++...+.. -+|... .+       .+..+.++ 
T Consensus       116 ~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~--~~~e~~e~~eli~icrEYilal~i-El~Rr~l~~~~~kR~lEL  192 (325)
T 3mv2_A          116 EKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVD--DAEDEKLAHKILETAREYILGLSI-ELERRSLKEGNTVRMLEL  192 (325)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBC--SSHHHHHHHHHHHHHHHHHHHHHH-HHHHHTCCTTCHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeec--cHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCcccHHHHHHH
Confidence            34568999999999999999999999988743211  11222233333222222 222211 11       11111111 


Q ss_pred             -HHHhHhcCCCCchH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 024531          156 -QCSLVLGEDENNVK-ALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIA  205 (266)
Q Consensus       156 -~~~~al~l~p~~~~-a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~  205 (266)
                       .|=.-..+.|.+.- ++...-...++.++|..|...-++.|++.|..+.+.
T Consensus       193 AAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a~  244 (325)
T 3mv2_A          193 AAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRAE  244 (325)
T ss_dssp             HHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHHH
T ss_pred             HHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHH
Confidence             11122344444432 333334556799999999999999999999755443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=88.65  E-value=5.3  Score=37.12  Aligned_cols=47  Identities=19%  Similarity=-0.005  Sum_probs=38.1

Q ss_pred             HHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024531          143 CLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKA  194 (266)
Q Consensus       143 ~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a  194 (266)
                      ..+.+|+++.|.+.++..     ++...|-.+|..+...++++.|+.+|.++
T Consensus       661 ~~l~~~~~~~A~~~~~~~-----~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          661 LALKVGQLTLARDLLTDE-----SAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHTCHHHHHHHHTTC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhhhcCCHHHHHHHHHhh-----CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            346788888888876432     46778889999999999999999999986

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=88.33  E-value=6.9  Score=29.72  Aligned_cols=89  Identities=13%  Similarity=0.048  Sum_probs=60.3

Q ss_pred             hhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----------------hCCC
Q 024531          138 LNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGK-----------------FAPE  200 (266)
Q Consensus       138 ~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~-----------------l~p~  200 (266)
                      ..++..+.-.|+|..|+-.+..   +  +...+.|..+.||..+.+|..|+.+++..++                 .+|.
T Consensus        37 lL~~I~LyyngEY~R~Lf~L~~---l--NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~  111 (242)
T 3kae_A           37 MLMSIVLYLNGEYTRALFHLHK---L--NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPG  111 (242)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHT---C--CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTT
T ss_pred             hhhhhhhhhcchHhHHHHHHHh---c--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccc
Confidence            4567788889999998876532   2  4678889999999999999999999999992                 2466


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 024531          201 DKSIARELRLLAEHEKAVYKKQKEIYKGIFG  231 (266)
Q Consensus       201 ~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~  231 (266)
                      +++.-..+.-..-.+-...++.-..|..-|+
T Consensus       112 DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~  142 (242)
T 3kae_A          112 DEEFFESLLGDLCTLSGYREEGIGHYVRSFG  142 (242)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCHHHhhhHhhhhcC
Confidence            6665544433323333334444444444433

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=87.99  E-value=2.5  Score=29.74  Aligned_cols=44  Identities=25%  Similarity=0.234  Sum_probs=34.9

Q ss_pred             CCCCCHH-HHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhc
Q 024531           71 RSDMTVE-ERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMG  114 (266)
Q Consensus        71 ~~~~~~~-~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~  114 (266)
                      ...|+.. ..+..+..+..+|...-..|+|.+|+.+|..++++.-
T Consensus         5 ~~~m~~~~~~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~   49 (117)
T 2cpt_A            5 SSGMSSTSPNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFL   49 (117)
T ss_dssp             CCCSCCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             cccCCccHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            3445434 4566788888899999999999999999999998753

>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=87.78  E-value=11  Score=31.41  Aligned_cols=114  Identities=12%  Similarity=-0.014  Sum_probs=66.2

Q ss_pred             HHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhh-hHHHHHHHh--hC-----HHHHHH--
Q 024531           86 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHL-NMAACLLKL--KR-----YEEAIG--  155 (266)
Q Consensus        86 ~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~-n~a~~~~~~--~~-----~~~A~~--  155 (266)
                      ....|-.++..|++.+|+..|..+|...|-....  ..++.++.+++...+.. -+|... .+  ..     .+....  
T Consensus       105 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~--~~~e~~e~~eli~icreYilal~i-El~Rr~l~~~~~~~~kR~l  181 (320)
T 3mkr_B          105 RLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVD--NKQEIAEAQQLITICREYIVGLSM-ETERKKLPKETLEQQKRIC  181 (320)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCC--SHHHHHHHHHHHHHHHHHHHHHHH-HHHHTTSCCCSHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeec--cHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcccCCchhHHHHH
Confidence            4578999999999999999999999988743211  11222233333322222 222221 21  11     111111  


Q ss_pred             ---HHHhHhcCCCCchH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 024531          156 ---QCSLVLGEDENNVK-ALFRRGKARAELGQTDAAREDFLKAGKFAPEDK  202 (266)
Q Consensus       156 ---~~~~al~l~p~~~~-a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~  202 (266)
                         .|=.-..+.|.+.- ++...-...++.++|..|...-++.|++.|..+
T Consensus       182 ELAAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~  232 (320)
T 3mkr_B          182 EMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPE  232 (320)
T ss_dssp             HHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHH
T ss_pred             HHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH
Confidence               11112244554433 333334456799999999999999999998743

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=86.99  E-value=1.7  Score=33.12  Aligned_cols=47  Identities=13%  Similarity=0.104  Sum_probs=40.9

Q ss_pred             HHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024531          144 LLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAG  195 (266)
Q Consensus       144 ~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al  195 (266)
                      .+.+|+++.|.+.++..     ++...|-++|......|+++-|..+|+++-
T Consensus        15 AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~   61 (177)
T 3mkq_B           15 ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH   61 (177)
T ss_dssp             HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence            35789999999998765     567889999999999999999999999763

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=86.85  E-value=3.5  Score=37.88  Aligned_cols=58  Identities=10%  Similarity=-0.043  Sum_probs=47.8

Q ss_pred             hHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024531          139 NMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGK  196 (266)
Q Consensus       139 n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~  196 (266)
                      .++...++.|+|..|...+...-.-.+....+.|.+|.++..+|+.++|...|+.+..
T Consensus       290 ~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          290 RRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            3444456789999999999876654445688999999999999999999999998875

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=86.78  E-value=1.2  Score=39.85  Aligned_cols=66  Identities=17%  Similarity=0.031  Sum_probs=54.1

Q ss_pred             hhhhHHHHHHHhhCHHHHHHHHHhHhcCCC---Cc--hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 024531          136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDE---NN--VKALFRRGKARAELGQTDAAREDFLKAGKFAPED  201 (266)
Q Consensus       136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p---~~--~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~  201 (266)
                      +++-+-..|+..+.|+.|.....++.-..+   ++  ...+|..|.++.-+++|.+|.+++..|+...|.+
T Consensus       233 l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~  303 (523)
T 4b4t_S          233 LINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN  303 (523)
T ss_dssp             HHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred             HHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence            566677899999999999999999853211   11  3457788999999999999999999999988864

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=86.52  E-value=1.8  Score=28.45  Aligned_cols=38  Identities=24%  Similarity=0.211  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhc
Q 024531           77 EERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMG  114 (266)
Q Consensus        77 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~  114 (266)
                      ......+-.+..+|...-+.|+|.+|+..|..+|+..-
T Consensus        13 ~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~   50 (83)
T 2w2u_A           13 VMLEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLA   50 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            34567788888999999999999999999999998753

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=86.03  E-value=6.3  Score=29.87  Aligned_cols=29  Identities=7%  Similarity=-0.105  Sum_probs=19.5

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHh
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIA  111 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~  111 (266)
                      ...++..|......|+++-|...|.++=+
T Consensus        34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D   62 (177)
T 3mkq_B           34 SITWERLIQEALAQGNASLAEMIYQTQHS   62 (177)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence            34566677777777777777777776544

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=84.22  E-value=7.9  Score=28.30  Aligned_cols=61  Identities=18%  Similarity=0.152  Sum_probs=42.9

Q ss_pred             hhhHHHHH-HHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 024531          137 HLNMAACL-LKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKF  197 (266)
Q Consensus       137 ~~n~a~~~-~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  197 (266)
                      |.++|.-+ ...|.-++-.+.++..+.-.+-++..++.+|.+|.++|+-.+|.+.+.+|.+-
T Consensus        93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k  154 (172)
T 1wy6_A           93 HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK  154 (172)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence            34444333 23444555455555556667778999999999999999999999999998863

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=83.95  E-value=5.8  Score=36.86  Aligned_cols=25  Identities=12%  Similarity=0.033  Sum_probs=17.2

Q ss_pred             hhhhHHHHHHHhhCHHHHHHHHHhH
Q 024531          136 CHLNMAACLLKLKRYEEAIGQCSLV  160 (266)
Q Consensus       136 ~~~n~a~~~~~~~~~~~A~~~~~~a  160 (266)
                      .+.++|..+.+.++++.|+..|.++
T Consensus       683 ~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          683 KWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            3666777777777777777777654

>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A

Probab=83.58  E-value=3.6  Score=26.28  Aligned_cols=40  Identities=18%  Similarity=0.105  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccch
Q 024531           78 ERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDF  117 (266)
Q Consensus        78 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~  117 (266)
                      ++........+.|..+...|++++|+.+|-+||..+|...
T Consensus        12 ~~e~~Fl~eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~   51 (73)
T 3ax2_A           12 AVQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQ   51 (73)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHH
Confidence            3334455556889999999999999999999999998743

>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=81.45  E-value=1.7  Score=28.60  Aligned_cols=35  Identities=17%  Similarity=0.144  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhh
Q 024531           79 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYM  113 (266)
Q Consensus        79 ~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~  113 (266)
                      ....+..+..+|...-..|+|.+|+..|..+++..
T Consensus         9 ~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l   43 (85)
T 2v6x_A            9 FLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYL   43 (85)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            34567777888888889999999999999999865

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=81.02  E-value=5  Score=26.26  Aligned_cols=15  Identities=13%  Similarity=0.009  Sum_probs=7.0

Q ss_pred             HHHHHHHHHhhCCCC
Q 024531          187 AREDFLKAGKFAPED  201 (266)
Q Consensus       187 A~~~~~~al~l~p~~  201 (266)
                      |++.|..++...|+.
T Consensus        45 aie~l~~alk~e~d~   59 (83)
T 2w2u_A           45 AIEVLAQLVSLYRDG   59 (83)
T ss_dssp             HHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHCCCH
Confidence            333444444455553

>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1

Probab=80.52  E-value=5.5  Score=26.83  Aligned_cols=42  Identities=19%  Similarity=0.150  Sum_probs=35.7

Q ss_pred             CHHHHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccc
Q 024531           75 TVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDD  116 (266)
Q Consensus        75 ~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~  116 (266)
                      ..+.+..........|..+...|+++.|+.+|-+||..+|..
T Consensus        12 d~e~~e~~Fl~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP   53 (95)
T 1om2_A           12 DAEAVQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQP   53 (95)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSCH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence            455566667777889999999999999999999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	266
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	1e-17
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	9e-15
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	6e-13
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	2e-12
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-08
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-05
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	9e-07
d1u79a_	125	d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis tha	2e-06
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	1e-05
d1q6ha_	210	d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	2e-05
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	2e-05
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	6e-05
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	7e-05
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	2e-04
d1q1ca2	117	d.26.1.1 (A:141-257) FKBP52, N-terminal domains {H	1e-04
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	1e-04
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	3e-04
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	3e-04
d1r9ha_	118	d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabd	4e-04
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	5e-04
d1fd9a_	204	d.26.1.1 (A:) Macrophage infectivity potentiator p	6e-04
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	9e-04
d1kt1a2	111	d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Mo	0.002

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 75.8 bits (185), Expect = 1e-17
 Identities = 42/158 (26%), Positives = 80/158 (50%), Gaps = 2/158 (1%)

Query: 73  DMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAV 132
           +M  +E++  A   K  G   FK  K  +A+ QY   ++++  ++   L  K    + + 
Sbjct: 5   EMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEY--GLSEKESKASESF 62

Query: 133 KNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFL 192
                LN+A C LKL+ Y +A+  C   LG D  N K L+RRG+A+  + + ++A+ DF 
Sbjct: 63  LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFE 122

Query: 193 KAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIF 230
           K  +  P++K+   ++ +  +  K   ++ +  Y  +F
Sbjct: 123 KVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMF 160

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.2 bits (165), Expect = 9e-15
 Identities = 49/168 (29%), Positives = 85/168 (50%), Gaps = 2/168 (1%)

Query: 73  DMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAV 132
           +M  EE++  +   K  G   FKE K ++A+ QY+  ++++  +  F    +    A A+
Sbjct: 3   EMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS--NEEAQKAQAL 60

Query: 133 KNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFL 192
           +   HLN+A C LKL+ +  AI  C+  L  D NN K L RRG+A   +   + AR DF 
Sbjct: 61  RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQ 120

Query: 193 KAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKK 240
           K  +  P +K+   +L +  +  +    ++K++Y  +F    E + K 
Sbjct: 121 KVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKA 168

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 62.7 bits (151), Expect = 6e-13
 Identities = 47/148 (31%), Positives = 73/148 (49%), Gaps = 1/148 (0%)

Query: 69  KARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDM 128
           K+  D T EE++ +A   K +GN  FK+ ++ EA+ +Y+ A+ +      +       D 
Sbjct: 3   KSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWD-DQILLDK 61

Query: 129 ALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAR 188
              ++  C+LN+A C  K K Y +AI   S VL  D+NNVKAL++ G A    G  + A+
Sbjct: 62  KKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAK 121

Query: 189 EDFLKAGKFAPEDKSIARELRLLAEHEK 216
           E+  KA    P +  I     L     K
Sbjct: 122 ENLYKAASLNPNNLDIRNSYELCVNKLK 149

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 62.0 bits (149), Expect = 2e-12
 Identities = 47/151 (31%), Positives = 73/151 (48%), Gaps = 1/151 (0%)

Query: 76  VEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNP 135
           V++ +  ++  K  GN  FK +  E A+++Y   + Y+              +   V   
Sbjct: 20  VDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ-PVALS 78

Query: 136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAG 195
           C LN+ AC LK+  ++ A+  C   L  D +N KAL+RR +    L + D A  D  KA 
Sbjct: 79  CVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQ 138

Query: 196 KFAPEDKSIARELRLLAEHEKAVYKKQKEIY 226
           + APEDK+I  EL  + +  KA   K+K  Y
Sbjct: 139 EIAPEDKAIQAELLKVKQKIKAQKDKEKAAY 169

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 3e-08
 Identities = 16/129 (12%), Positives = 32/129 (24%), Gaps = 17/129 (13%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAY-----------------MGDDFMFQLFGKYRDMALAV 132
               +++  ++ A+  Y  AI                    G     +            
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT 303

Query: 133 KNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFL 192
                 N+A    +    EEA+      L        A         + G+   A   + 
Sbjct: 304 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 363

Query: 193 KAGKFAPED 201
           +A + +P  
Sbjct: 364 EAIRISPTF 372

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 3e-06
 Identities = 10/64 (15%), Positives = 21/64 (32%)

Query: 138 LNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKF 197
           + +A    +   +E A   C  +  ++ +N   L        +  + D +      A K 
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62

Query: 198 APED 201
            P  
Sbjct: 63  NPLL 66

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 6e-06
 Identities = 15/95 (15%), Positives = 30/95 (31%), Gaps = 17/95 (17%)

Query: 88  MDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKL 147
              N   ++  +EEA++ Y  A+    +                     H N+A+ L + 
Sbjct: 310 NLANIKREQGNIEEAVRLYRKALEVFPEFAAA-----------------HSNLASVLQQQ 352

Query: 148 KRYEEAIGQCSLVLGEDENNVKALFRRGKARAELG 182
            + +EA+      +        A    G    E+ 
Sbjct: 353 GKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 1e-05
 Identities = 26/143 (18%), Positives = 47/143 (32%), Gaps = 23/143 (16%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
           GN L +    + A+  Y  A++   +  +                  H N+A    +   
Sbjct: 210 GNVLKEARIFDRAVAAYLRALSLSPNHAV-----------------VHGNLACVYYEQGL 252

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK----SIA 205
            + AI      +    +   A      A  E G    A + +  A +  P       ++A
Sbjct: 253 IDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA 312

Query: 206 RELRLLAEHEKAV--YKKQKEIY 226
              R     E+AV  Y+K  E++
Sbjct: 313 NIKREQGNIEEAVRLYRKALEVF 335

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 3e-05
 Identities = 8/88 (9%), Positives = 25/88 (28%), Gaps = 17/88 (19%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
            +  ++    E A +          D+                     L +++   + +R
Sbjct: 6   AHREYQAGDFEAAERHCMQLWRQEPDNT-----------------GVLLLLSSIHFQCRR 48

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKA 177
            + +    +L + ++    +A    G  
Sbjct: 49  LDRSAHFSTLAIKQNPLLAEAYSNLGNV 76

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 5e-05
 Identities = 24/168 (14%), Positives = 48/168 (28%), Gaps = 18/168 (10%)

Query: 83  ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAA 142
           A      G     + ++  A+  +E A+    +                     ++N+  
Sbjct: 169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFL-----------------DAYINLGN 211

Query: 143 CLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK 202
            L + + ++ A+      L    N+            E G  D A + + +A +  P   
Sbjct: 212 VLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF- 270

Query: 203 SIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKKNWLIIFWQLL 250
             A      A  EK    + ++ Y       P      N L    +  
Sbjct: 271 PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.1 bits (108), Expect = 9e-07
 Identities = 35/147 (23%), Positives = 54/147 (36%), Gaps = 18/147 (12%)

Query: 82  AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMA 141
           +A   K  GN LF   K  EA   Y  AI       +                  + N A
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAV-----------------YYTNRA 45

Query: 142 ACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED 201
            C LK+++ E+A+  C   L  D  +VKA F  G+ + E+   D A  +  +A   A E 
Sbjct: 46  LCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105

Query: 202 K-SIARELRLLAEHEKAVYKKQKEIYK 227
           + +   ++       K       E  +
Sbjct: 106 RLNFGDDIPSALRIAKKKRWNSIEERR 132

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 125

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 43.7 bits (102), Expect = 2e-06
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 9   EMTGLAIGVSSMKAGEHALLHVGWELGYGKEGS---FSFPNVSPMADLVYEVVLIG 61
           +    + G+  M  G    L +  EL YG  G+        + P + L++++  IG
Sbjct: 68  QGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIG 123

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (100), Expect = 1e-05
 Identities = 21/182 (11%), Positives = 46/182 (25%), Gaps = 32/182 (17%)

Query: 90  GNALFKEEKLEEAMQQYEMAI-----AYMGDDFMFQLFGKYRDMALAVKN---------P 135
           G     ++  + A+  +                M+ +     +   A             
Sbjct: 12  GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV 71

Query: 136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENN----------------VKALFRRGKARA 179
            +        + ++Y+ AI      L +   N                 + L+      A
Sbjct: 72  AYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYA 131

Query: 180 ELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQK 239
           +  +   A E    A     E +  ++  + +    K    +   I  G    RP  +Q 
Sbjct: 132 KKEEWKKAEEQLALATSMKSEPRH-SKIDKAMECVWKQKLYEPVVIPVGRLF-RPNERQV 189

Query: 240 KN 241
             
Sbjct: 190 AQ 191

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]} Length = 210

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

 Score = 42.1 bits (98), Expect = 2e-05
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 8   KEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF 62
             + G   G+ ++K G    L +  EL YGK G    P + P + LV++V L+  
Sbjct: 158 GVIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGV---PGIPPNSTLVFDVELLDV 209

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 2e-05
 Identities = 23/152 (15%), Positives = 48/152 (31%), Gaps = 18/152 (11%)

Query: 77  EERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPC 136
           +  +  A+  K   N  FK +  E A++ Y  AI     + ++        +        
Sbjct: 4   DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYA 63

Query: 137 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGK 196
             +    +                   D+  +K  +RR  +   LG+  AA  D+    K
Sbjct: 64  LGDATRAIEL-----------------DKKYIKGYYRRAASNMALGKFRAALRDYETVVK 106

Query: 197 FAPEDKSIAREL-RLLAEHEKAVYKKQKEIYK 227
             P DK    +        ++  +++     +
Sbjct: 107 VKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 138

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 40.1 bits (92), Expect = 6e-05
 Identities = 26/152 (17%), Positives = 47/152 (30%), Gaps = 20/152 (13%)

Query: 78  ERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCH 137
           + +  A     D        + +EA      A+         + F             CH
Sbjct: 4   KEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFD-----AFCH 58

Query: 138 LNMAACLLKLKRYEEAIGQCSLVL-----------GEDENNVKALFRRGKARAELGQTDA 186
             +A  L  L+ ++EA+      L            E +  + A++ R  A   LG+   
Sbjct: 59  AGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAE 118

Query: 187 AREDFLKAGKFAPEDK----SIARELRLLAEH 214
           A  +F K  +   E K       R + +  + 
Sbjct: 119 AMPEFKKVVEMIEERKGETPGKERMMEVAIDR 150

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 40.8 bits (95), Expect = 7e-05
 Identities = 16/147 (10%), Positives = 33/147 (22%), Gaps = 17/147 (11%)

Query: 90  GNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR 149
                 E +L++A++    AI     D                      +    L     
Sbjct: 3   WKNALSEGQLQQALELLIEAIKASPKDA-----------------SLRSSFIELLCIDGD 45

Query: 150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELR 209
           +E A  Q    +      +    +               +    A      ++     + 
Sbjct: 46  FERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVS 105

Query: 210 LLAEHEKAVYKKQKEIYKGIFGPRPEP 236
                    Y++  E+   I   R E 
Sbjct: 106 FNLSMVSQDYEQVSELALQIEELRQEK 132

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 39.6 bits (92), Expect = 2e-04
 Identities = 15/100 (15%), Positives = 30/100 (30%)

Query: 144 LLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKS 203
            L   + ++A+      +     +        +     G  + A E  +++ K  PE   
Sbjct: 6   ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 65

Query: 204 IARELRLLAEHEKAVYKKQKEIYKGIFGPRPEPKQKKNWL 243
            A +LR L +  +A     +           E   K    
Sbjct: 66  GASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVS 105

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 1e-04
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 1   MVLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLI 60
           +  G+      GL   +  M+ GEH+++++     +G  G      + P A+L YE+ L 
Sbjct: 52  IGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGK-EKFQIPPNAELKYELHLK 110

Query: 61  GFDETKE 67
            F++ KE
Sbjct: 111 SFEKAKE 117

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (94), Expect = 1e-04
 Identities = 16/134 (11%), Positives = 36/134 (26%), Gaps = 15/134 (11%)

Query: 83  ADRRKMDGNALFKEEKLEEAMQQ-----YEMAIAYMGDDFMF-----QLFGKYRDMALAV 132
            D +          + L++  Q+      E A+    +  ++           +  A   
Sbjct: 20  TDSKLGPAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKNR 79

Query: 133 KNPCHLNMAACLLKL-----KRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAA 187
            NP    + A L          Y + + +   V   D        + G    +   T A 
Sbjct: 80  ANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAI 139

Query: 188 REDFLKAGKFAPED 201
            +    +  +  + 
Sbjct: 140 VKPQSSSCSYICQH 153

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 39.0 bits (89), Expect = 3e-04
 Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 4/66 (6%)

Query: 140 MAACLLKLKRYEEAIGQCSLVLGE----DENNVKALFRRGKARAELGQTDAAREDFLKAG 195
           +A  L    + E  + +   +L      D+   + L+ RG     LG    AR DF +A 
Sbjct: 5   LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL 64

Query: 196 KFAPED 201
              P+ 
Sbjct: 65  AIRPDM 70

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 3e-04
 Identities = 24/142 (16%), Positives = 48/142 (33%), Gaps = 20/142 (14%)

Query: 83  ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAA 142
           A + K  GN  +K++  + A++ Y+ A      +                      N AA
Sbjct: 4   ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMT-----------------YITNQAA 46

Query: 143 CLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKF---AP 199
              +   Y +    C   +     N +   +  KA A +G +    E +  A  F   + 
Sbjct: 47  VYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL 106

Query: 200 EDKSIARELRLLAEHEKAVYKK 221
            +      L+   + EK + ++
Sbjct: 107 AEHRTPDVLKKCQQAEKILKEQ 128

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]} Length = 118

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 37.0 bits (85), Expect = 4e-04
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 20  MKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF 62
           M  GE A   +  + GYG  GS   P +   A L++EV L  +
Sbjct: 76  MTKGEVAEFTIRSDYGYGDAGSP--PKIPGGATLIFEVELFEW 116

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 5e-04
 Identities = 20/114 (17%), Positives = 31/114 (27%), Gaps = 17/114 (14%)

Query: 83  ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPC------ 136
            +  K  GN       +++A+Q Y  AI     + +                        
Sbjct: 3   VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 62

Query: 137 -----------HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARA 179
                      +   AA L  L R+EEA       L  + NN +         A
Sbjct: 63  TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]} Length = 204

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

 Score = 37.5 bits (86), Expect = 6e-04
 Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 10  MTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDET 65
           + G    +  M AG    ++V   L YG         + P   L++++ LI   ++
Sbjct: 151 IPGWTEALQLMPAGSTWEIYVPSGLAYGPRS--VGGPIGPNETLIFKIHLISVKKS 204

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 9e-04
 Identities = 10/61 (16%), Positives = 20/61 (32%)

Query: 134 NPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLK 193
           +P         L+      A+      + +D  +++A    G  +AE  Q   A     +
Sbjct: 19  HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRR 78

Query: 194 A 194
            
Sbjct: 79  C 79

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 111

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 34.7 bits (79), Expect = 0.002
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 20  MKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF 62
           MK GE   L    E  YG  GS   P +   A L +EV L+ F
Sbjct: 70  MKKGEICHLLCKPEYAYGATGSL--PKIPSNATLFFEVELLDF 110

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	266
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.95
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.94
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.92
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.88
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.86
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.82
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.77
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.74
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.71
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.67
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.64
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.63
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.6
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.6
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.55
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.55
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.54
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.54
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.53
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.53
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.49
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.46
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.45
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.44
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.41
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.4
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.4
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.4
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.31
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.2
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.2
d1r9ha_	118	FKB-6, N-terminal domain {Caenorhabditis elegans [	99.17
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.16
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.14
d1kt1a2	111	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.13
d2ppna1	107	FK-506 binding protein (FKBP12), an immunophilin {	99.1
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.1
d1kt1a3	115	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.08
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.08
d1q1ca1	120	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.08
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.07
d1yata_	113	Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyc	99.05
d1pbka_	116	FKBP25 {Human (Homo sapiens) [TaxId: 9606]}	99.03
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.99
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.97
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.96
d1jvwa_	160	Macrophage infectivity potentiator protein (MIP) {	98.96
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.94
d1q1ca2	117	FKBP52, N-terminal domains {Human (Homo sapiens) [	98.93
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.92
d1fd9a_	204	Macrophage infectivity potentiator protein (MIP) {	98.89
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.81
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.74
d1q6ha_	210	Peptidyl-prolyl cis-trans isomerase FkpA {Escheric	98.72
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.7
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.68
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.63
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.61
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.58
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.56
d1u79a_	125	FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId:	98.43
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.27
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.23
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.87
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.57
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.5
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.43
d1hxva_	85	Trigger factor PPIase domain {Mycoplasma genitaliu	97.22
d1ix5a_	151	Archaeal FKBP {Archaeon Methanococcus thermolithot	97.09
d1l1pa_	106	Trigger factor PPIase domain {Escherichia coli [Ta	93.07
d1t11a3	113	Trigger factor PPIase domain {Vibrio cholerae [Tax	89.97
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	89.82
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	86.13
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	85.25
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	83.85
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	83.18
d1wr0a1	77	Vacuolar sorting protein 4b (VPS4B, SKD1 protein)	83.12
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	80.08

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.5e-26  Score=177.84  Aligned_cols=160  Identities=29%  Similarity=0.473  Sum_probs=146.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCH
Q 024531           71 RSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRY  150 (266)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~  150 (266)
                      +|+|+.+++++.+..+++.|+.+|..|+|++|+..|.++|...|.....  ..........+...+|.|+|.||+++|+|
T Consensus         1 ~~~~~~~ek~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~--~~~~~~~~~~~~~~~~~nla~~y~k~~~~   78 (170)
T d1p5qa1           1 SWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSF--SNEEAQKAQALRLASHLNLAMCHLKLQAF   78 (170)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCC--CSHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcccc--chHHHhhhchhHHHHHHHHHHHHHhhhhc
Confidence            4899999999999999999999999999999999999999998865432  23344455667778899999999999999


Q ss_pred             HHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 024531          151 EEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIF  230 (266)
Q Consensus       151 ~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~  230 (266)
                      ++|+.+++++|.++|+++.+++++|.||..+|+|++|+.+|+++++++|+|+.+...+..+...+++..+.+++.|.+||
T Consensus        79 ~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f  158 (170)
T d1p5qa1          79 SAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF  158 (170)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CC
Q 024531          231 GP  232 (266)
Q Consensus       231 ~~  232 (266)
                      +.
T Consensus       159 ~~  160 (170)
T d1p5qa1         159 ER  160 (170)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.94  E-value=4.9e-26  Score=175.79  Aligned_cols=160  Identities=26%  Similarity=0.434  Sum_probs=146.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCH
Q 024531           71 RSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRY  150 (266)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~  150 (266)
                      .|.|+..++++.++.+++.|+.+|..|+|.+|+..|.+||...+.....  ..........+...+|.|+|.||.++|+|
T Consensus         3 ~~~m~~~E~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~--~~~~~~~~~~~~~~~~~Nla~~~~~l~~~   80 (168)
T d1kt1a1           3 SWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGL--SEKESKASESFLLAAFLNLAMCYLKLREY   80 (168)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSC--CHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcc--chhhhhhcchhHHHHHHhHHHHHHHhhhc
Confidence            7999999999999999999999999999999999999999998764432  23344455666778899999999999999


Q ss_pred             HHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 024531          151 EEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIF  230 (266)
Q Consensus       151 ~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~  230 (266)
                      .+|+.+|++++.++|+++++++++|.+|..+|+|++|+.+|++++.++|+|+.+...+..+....++..+++++.|++||
T Consensus        81 ~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f  160 (168)
T d1kt1a1          81 TKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMF  160 (168)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999989899999999998


Q ss_pred             CC
Q 024531          231 GP  232 (266)
Q Consensus       231 ~~  232 (266)
                      ..
T Consensus       161 ~~  162 (168)
T d1kt1a1         161 KK  162 (168)
T ss_dssp             HH
T ss_pred             hh
Confidence            54

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.92  E-value=3.3e-24  Score=162.91  Aligned_cols=148  Identities=31%  Similarity=0.446  Sum_probs=130.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhC
Q 024531           70 ARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKR  149 (266)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~  149 (266)
                      ..|+++.++++..+..+++.|+.+|+.|+|.+|+..|.+||.+.+...... ..........+...+++|+|.||+++|+
T Consensus         4 ~~~~~~~~e~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~-~~~~~~~~~~~~~~~~~Nla~~~~~l~~   82 (153)
T d2fbna1           4 SIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWD-DQILLDKKKNIEISCNLNLATCYNKNKD   82 (153)
T ss_dssp             SGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCC-CHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             chhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhh-hHHHHHhhhhHHHHHHhhHHHHHHHhcc
Confidence            479999999999999999999999999999999999999999887643321 1122233455667789999999999999


Q ss_pred             HHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 024531          150 YEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAV  218 (266)
Q Consensus       150 ~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~  218 (266)
                      +++|+.+|+++|+++|.+.++|+++|.+|..+|+|++|+.+|++++.++|+|+.+...+..+..++++.
T Consensus        83 ~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~~~  151 (153)
T d2fbna1          83 YPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEA  151 (153)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999887666553

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.88  E-value=7.9e-22  Score=151.91  Aligned_cols=150  Identities=31%  Similarity=0.417  Sum_probs=128.1

Q ss_pred             CCHHHHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHH
Q 024531           74 MTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEA  153 (266)
Q Consensus        74 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A  153 (266)
                      ...+.....+..++..|+.++..|+|..|+..|.++|.+.+....... .............++.|+|.||.++|+|++|
T Consensus        18 ~~~~~~~~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~-~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A   96 (169)
T d1ihga1          18 KDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAE-DADGAKLQPVALSCVLNIGACKLKMSDWQGA   96 (169)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSC-HHHHGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhh-hHHHHHhChhhHHHHHHHHHHHHhhcccchh
Confidence            356677788889999999999999999999999999998765332211 1111123445667899999999999999999


Q ss_pred             HHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 024531          154 IGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKE  224 (266)
Q Consensus       154 ~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~  224 (266)
                      +.+|++||+++|+++++|+++|.+|..+|+|++|+.+|+++++++|+|+.+...|..+...++...+++++
T Consensus        97 i~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~~k~  167 (169)
T d1ihga1          97 VDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA  167 (169)
T ss_dssp             HHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999998888877776654

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=5.9e-22  Score=143.44  Aligned_cols=114  Identities=18%  Similarity=0.199  Sum_probs=109.3

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531           82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  161 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al  161 (266)
                      .++.+++.|+.++..|+|++|+..|.++|..+|.++.                 ++.++|.||.++|++.+|+.+|.+++
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~-----------------~~~~~a~~~~~~~~~~~A~~~~~~al   64 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHV-----------------LYSNRSAAYAKKGDYQKAYEDGCKTV   64 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchh-----------------hhhcccccccccccccccchhhhhHH
Confidence            4677899999999999999999999999999999766                 69999999999999999999999999


Q ss_pred             cCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024531          162 GEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLA  212 (266)
Q Consensus       162 ~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  212 (266)
                      +++|+++.+|+++|.++..+|++++|+.+|+++++++|+++.+...+..+.
T Consensus        65 ~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          65 DLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HhccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999988775

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.3e-20  Score=143.54  Aligned_cols=122  Identities=23%  Similarity=0.322  Sum_probs=114.3

Q ss_pred             HHHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHH
Q 024531           77 EERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQ  156 (266)
Q Consensus        77 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~  156 (266)
                      ...++.++.++.+|+.+|+.|+|++|+..|++++.++|.+..                 ++.++|.|++.+|++++|+.+
T Consensus         4 ~~~l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~-----------------~~~~lg~~~~~~~~~~~A~~~   66 (159)
T d1a17a_           4 DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAI-----------------YYGNRSLAYLRTECYGYALGD   66 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH-----------------HHHHHHHHHHHTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhh-----------------hhhhhHHHHHhccccchHHHH
Confidence            345688999999999999999999999999999999999766                 699999999999999999999


Q ss_pred             HHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 024531          157 CSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE  215 (266)
Q Consensus       157 ~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  215 (266)
                      |+++|+++|+++.+++++|.++..+|+|++|+.+|++++.++|+++.+...+..+....
T Consensus        67 ~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~  125 (159)
T d1a17a_          67 ATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIV  125 (159)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998888775543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=5.5e-20  Score=144.30  Aligned_cols=103  Identities=32%  Similarity=0.375  Sum_probs=98.3

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  162 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~  162 (266)
                      ++.+++.|+.+|+.|+|++|+..|.++|.++|.++.                 ++.|+|.||.++|++++|+.+|++|+.
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~-----------------~~~~lg~~y~~~~~~~~Ai~~~~~al~   66 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAV-----------------YYTNRALCYLKMQQPEQALADCRRALE   66 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----------------HHHhHHHHHhhhhhhhhhhHHHHHHHH
Confidence            677899999999999999999999999999999766                 699999999999999999999999999


Q ss_pred             CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 024531          163 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK  202 (266)
Q Consensus       163 l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~  202 (266)
                      ++|+++.+|+++|.+|..+|+|++|+.+|++++.++|++.
T Consensus        67 l~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          67 LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence            9999999999999999999999999999999999998643

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2.9e-18  Score=125.68  Aligned_cols=118  Identities=18%  Similarity=0.175  Sum_probs=103.9

Q ss_pred             HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhH
Q 024531           81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  160 (266)
Q Consensus        81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~a  160 (266)
                      +.+..+++.|+.+|..|+|++|+..|+++|+++|++..                 ++.|+|.||.++|+|++|+.+|+++
T Consensus         2 ~~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~-----------------~~~~~a~~~~~~~~~~~A~~~~~~a   64 (128)
T d1elra_           2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMT-----------------YITNQAAVYFEKGDYNKCRELCEKA   64 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH-----------------HHHhHHHHHHHcCchHHHHHHHHHH
Confidence            35778899999999999999999999999999999765                 6999999999999999999999999


Q ss_pred             hcCCCCch-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 024531          161 LGEDENNV-------KALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEK  216 (266)
Q Consensus       161 l~l~p~~~-------~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~  216 (266)
                      +.++|.+.       .+++++|.++..++++++|+.+|++++..+|+ +++...+..+.+.++
T Consensus        65 l~l~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~~~k~lk  126 (128)
T d1elra_          65 IEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKILK  126 (128)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHH
T ss_pred             HHhCcccHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHh
Confidence            99998764       57888999999999999999999999999885 666666666544433

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.5e-17  Score=120.68  Aligned_cols=113  Identities=15%  Similarity=0.099  Sum_probs=101.3

Q ss_pred             HHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHH---hhCHHHHHHHHHhHhcC
Q 024531           87 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLK---LKRYEEAIGQCSLVLGE  163 (266)
Q Consensus        87 ~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~---~~~~~~A~~~~~~al~l  163 (266)
                      .+.++.+...+++.+|.+.|.+++..+|.+..                 +++|+|.|+++   .+++.+|+..+++++..
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~-----------------~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~   65 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKS-----------------TQFEYAWCLVRTRYNDDIRKGIVLLEELLPK   65 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHH-----------------HHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHH-----------------HHHHHHHHHHHhcchHHHHHHHHHHHHHHhc
Confidence            45778899999999999999999999999766                 69999999987   45677899999999999


Q ss_pred             CCCc--hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 024531          164 DENN--VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEK  216 (266)
Q Consensus       164 ~p~~--~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~  216 (266)
                      +|.+  ..+++++|.+|..+|+|++|+.+|+++++++|+|..++..+..+....+
T Consensus        66 ~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~  120 (122)
T d1nzna_          66 GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK  120 (122)
T ss_dssp             SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHc
Confidence            9866  4589999999999999999999999999999999999998888766554

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=1.3e-16  Score=129.36  Aligned_cols=117  Identities=20%  Similarity=0.067  Sum_probs=108.6

Q ss_pred             HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhH
Q 024531           81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  160 (266)
Q Consensus        81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~a  160 (266)
                      ..+..++.+|..++..|+|++|+..|.++|.++|+++.                 +++++|.+|..+|++++|+.+|+++
T Consensus        35 ~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~-----------------a~~~lg~~~~~~g~~~~A~~~~~~a   97 (259)
T d1xnfa_          35 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPE-----------------VFNYLGIYLTQAGNFDAAYEAFDSV   97 (259)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHH-----------------HHhhhchHHHHHHHHHHhhhhhhHH
Confidence            45788999999999999999999999999999999766                 6999999999999999999999999


Q ss_pred             hcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024531          161 LGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEH  214 (266)
Q Consensus       161 l~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  214 (266)
                      +.++|+++.+++++|.++..+|++++|+..|+++++++|++......+..+...
T Consensus        98 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  151 (259)
T d1xnfa_          98 LELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQK  151 (259)
T ss_dssp             HHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998877666655443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=3.7e-16  Score=122.24  Aligned_cols=135  Identities=15%  Similarity=0.117  Sum_probs=112.3

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531           82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  161 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al  161 (266)
                      .+-.++++|..++..|+|+.|+..|.++   .|..+.                 +++|+|.+|..+|++++|+.+|++||
T Consensus         4 ~~~~l~~~g~~~~~~~d~~~Al~~~~~i---~~~~~~-----------------~~~nlG~~~~~~g~~~~A~~~~~kAl   63 (192)
T d1hh8a_           4 EAISLWNEGVLAADKKDWKGALDAFSAV---QDPHSR-----------------ICFNIGCMYTILKNMTEAEKAFTRSI   63 (192)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTS---SSCCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHhc---CCCCHH-----------------HHHHHHHHHHHcCCchhHHHHHHHHH
Confidence            4557788999999999999999999874   333222                 58899999999999999999999999


Q ss_pred             cCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 024531          162 GEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPED----------------KSIARELRLLAEHEKAVYKKQKEI  225 (266)
Q Consensus       162 ~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~----------------~~~~~~l~~l~~~~~~~~~~~~~~  225 (266)
                      +++|+++.+|+++|.+|..+|+|++|+.+|++++...|.|                .++...++.+...+++..++.. .
T Consensus        64 ~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~-~  142 (192)
T d1hh8a_          64 NRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEE-Q  142 (192)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHH-H
T ss_pred             HHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHH-H
Confidence            9999999999999999999999999999999999877654                3566678888777777766554 4


Q ss_pred             HhcccCCCCCCc
Q 024531          226 YKGIFGPRPEPK  237 (266)
Q Consensus       226 ~~k~~~~~~~~~  237 (266)
                      +.+.....+++.
T Consensus       143 l~~A~~~~~~~~  154 (192)
T d1hh8a_         143 LALATSMKSEPR  154 (192)
T ss_dssp             HHHHHTTCCSGG
T ss_pred             HHHHHhcCCCcc
Confidence            677776666543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.64  E-value=4.5e-16  Score=116.22  Aligned_cols=113  Identities=19%  Similarity=0.124  Sum_probs=98.8

Q ss_pred             HHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHh----------hCHHHHHHHHHhH
Q 024531           91 NALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKL----------KRYEEAIGQCSLV  160 (266)
Q Consensus        91 ~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~----------~~~~~A~~~~~~a  160 (266)
                      ..+-+.+.|++|+..|++++.++|++..                 +++++|.++..+          +.+++|+..|++|
T Consensus         5 ~~~~r~~~fe~A~~~~e~al~~~P~~~~-----------------~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kA   67 (145)
T d1zu2a1           5 TEFDRILLFEQIRQDAENTYKSNPLDAD-----------------NLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEA   67 (145)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHccHHHHHHHHHHHHhhCCcchH-----------------HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Confidence            3455667899999999999999999876                 699999999865          4568999999999


Q ss_pred             hcCCCCchHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 024531          161 LGEDENNVKALFRRGKARAELGQ-----------TDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYK  220 (266)
Q Consensus       161 l~l~p~~~~a~~~~g~~~~~~g~-----------~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~  220 (266)
                      ++++|+++.+++++|.+|..+|+           |++|.++|+++++++|+|..++..|..+.+..+...+
T Consensus        68 l~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e  138 (145)
T d1zu2a1          68 LLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAE  138 (145)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHH
T ss_pred             HHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999988764           7999999999999999999999999988766655444

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.63  E-value=1.1e-15  Score=109.00  Aligned_cols=93  Identities=12%  Similarity=-0.009  Sum_probs=85.3

Q ss_pred             HHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCC
Q 024531           86 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDE  165 (266)
Q Consensus        86 ~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p  165 (266)
                      ....|..+++.|++.+|+..|++++...|+...                 ++.++|.++...|++++|+.++++++.++|
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~-----------------a~~~lg~~~~~~~~~~~A~~~~~~al~~~p   81 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREE-----------------AWRSLGLTQAENEKDGLAIIALNHARMLDP   81 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhcccccccch-----------------hhhhhhhhhhhhhhHHHhhccccccccccc
Confidence            467899999999999999999999999998655                 699999999999999999999999999999


Q ss_pred             CchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024531          166 NNVKALFRRGKARAELGQTDAAREDFLKAG  195 (266)
Q Consensus       166 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al  195 (266)
                      +++.+++.+|.+|..+|++++|++.|++.|
T Consensus        82 ~~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          82 KDIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            999999999999999999999999999876

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.60  E-value=1.8e-15  Score=114.15  Aligned_cols=117  Identities=20%  Similarity=0.209  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531           80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  159 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~  159 (266)
                      +..+..+...|+.++..|+|++|+..|.++|++.|..+.......     ......+|.|+|.||.++|+|++|+.++++
T Consensus         6 ~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~-----~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~   80 (156)
T d2hr2a1           6 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDH-----AGFDAFCHAGLAEALAGLRSFDEALHSADK   80 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCH-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhccc-----chhHHHHHHHHHHHHHHcCccchhhHhhhh
Confidence            445556667799999999999999999999999987543211100     112345799999999999999999999999


Q ss_pred             HhcCCCC-----------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 024531          160 VLGEDEN-----------NVKALFRRGKARAELGQTDAAREDFLKAGKFAPED  201 (266)
Q Consensus       160 al~l~p~-----------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~  201 (266)
                      ++.+.|.           ...+++++|.+|..+|++++|+.+|++++++.|+.
T Consensus        81 al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          81 ALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             HHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             hhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence            9977542           34589999999999999999999999999997754

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.4e-15  Score=126.45  Aligned_cols=133  Identities=13%  Similarity=0.032  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhh--------hhch-hHHHHHH---------HhhhhhhhhHH
Q 024531           80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMF--------QLFG-KYRDMAL---------AVKNPCHLNMA  141 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~--------~~~~-~~~~~~~---------~l~~~~~~n~a  141 (266)
                      +..++.+...|..+.+.+.+++|+..|.+||+++|.....        ...+ ...+.+.         .-...++.++|
T Consensus        40 p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~  119 (315)
T d2h6fa1          40 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRR  119 (315)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHh
Confidence            3456666777888888888888888888888888876542        0000 0111100         01123455666


Q ss_pred             HHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024531          142 ACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLA  212 (266)
Q Consensus       142 ~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  212 (266)
                      .++..+|++++|+.+++++++++|++..+|+++|.++..+|++++|+.+|+++++++|+|..++..++.+.
T Consensus       120 ~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l  190 (315)
T d2h6fa1         120 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVI  190 (315)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHH
Confidence            66666666666666666666666666666666666666666666666666666666666666655555543

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.8e-14  Score=120.33  Aligned_cols=136  Identities=17%  Similarity=0.100  Sum_probs=101.7

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531           82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  161 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al  161 (266)
                      ....+...|..++..|++++|+..|+++++..|+...                 ++.++|.++...|++.+|+..++.++
T Consensus       236 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~-----------------~~~~l~~~~~~~~~~~~A~~~~~~~~  298 (388)
T d1w3ba_         236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD-----------------AYCNLANALKEKGSVAEAEDCYNTAL  298 (388)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH-----------------HHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHhhh
Confidence            4566778999999999999999999999999998655                 46677777777777777777777777


Q ss_pred             cCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 024531          162 GEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPE  235 (266)
Q Consensus       162 ~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~  235 (266)
                      ...|.+..+++.+|.++..+|++++|+..|+++++++|+++.++..++.+...+++..++. ..|.+++...|+
T Consensus       299 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~l~P~  371 (388)
T d1w3ba_         299 RLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL-MHYKEAIRISPT  371 (388)
T ss_dssp             HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHH-HHHHHHHTTCTT
T ss_pred             ccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCC
Confidence            7777777777777777777777777777777777777777777777777766665554443 336666655443

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=3.3e-14  Score=119.87  Aligned_cols=135  Identities=17%  Similarity=0.182  Sum_probs=88.6

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  162 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~  162 (266)
                      ...+...|..++..|++++|+..|.+++...|....                 .+.++|.++...|++++|+..++++++
T Consensus       203 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~~~~~~~~A~~~~~~al~  265 (388)
T d1w3ba_         203 LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV-----------------VHGNLACVYYEQGLIDLAIDTYRRAIE  265 (388)
T ss_dssp             HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHH-----------------HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            455666677777777777777777777766665443                 466667777777777777777777777


Q ss_pred             CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 024531          163 EDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPE  235 (266)
Q Consensus       163 l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~  235 (266)
                      ++|+++.+++.+|.++..+|++++|+..|+.++...|.+..+...+..+....++..++. ..|++.+...|+
T Consensus       266 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~al~~~p~  337 (388)
T d1w3ba_         266 LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAV-RLYRKALEVFPE  337 (388)
T ss_dssp             TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH-HHHHHHTTSCTT
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHH-HHHHHHHHhCCC
Confidence            777777777777777777777777777777777777777766666666655555544333 335666554443

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=2.4e-14  Score=115.63  Aligned_cols=126  Identities=13%  Similarity=-0.016  Sum_probs=106.0

Q ss_pred             hccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHH
Q 024531           96 EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRG  175 (266)
Q Consensus        96 ~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g  175 (266)
                      ..+++.|+..+.+++...+....             -...+++++|.+|..+|++++|+.+|+++|.++|+++.+++++|
T Consensus        12 ~~~~e~al~~~~e~l~~~~~~~~-------------~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg   78 (259)
T d1xnfa_          12 TLQQEVILARMEQILASRALTDD-------------ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLG   78 (259)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCHH-------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhhhcCCH-------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhc
Confidence            45677888888888875442211             13447999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 024531          176 KARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPE  235 (266)
Q Consensus       176 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~  235 (266)
                      .+|..+|++++|+.+|++++.++|++..+...++.+...+++..++. ..|.+.+...+.
T Consensus        79 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~-~~~~~al~~~p~  137 (259)
T d1xnfa_          79 IYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQ-DDLLAFYQDDPN  137 (259)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTT
T ss_pred             hHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHH-HHHHHHHhhccc
Confidence            99999999999999999999999999999999999987777766554 457777765554

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.4e-14  Score=120.81  Aligned_cols=105  Identities=17%  Similarity=0.209  Sum_probs=80.6

Q ss_pred             HHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCC
Q 024531           85 RRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGED  164 (266)
Q Consensus        85 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~  164 (266)
                      .+...|..+...|++++|+..|.+++...|+...                 ++.++|.++..+|++++|+..|+++++++
T Consensus       174 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~-----------------~~~~lg~~~~~~g~~~~A~~~~~~al~~~  236 (323)
T d1fcha_         174 VQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYL-----------------LWNKLGATLANGNQSEEAVAAYRRALELQ  236 (323)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             cchhhHHHHHHHHHHhhhhccccccccccccccc-----------------chhhhhhcccccccchhHHHHHHHHHHHh
Confidence            4556777788888888888888888888877554                 57788888888888888888888888888


Q ss_pred             CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 024531          165 ENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIAR  206 (266)
Q Consensus       165 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~  206 (266)
                      |+++.+++.+|.+|..+|++++|+..|++|++++|++..+..
T Consensus       237 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~  278 (323)
T d1fcha_         237 PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRG  278 (323)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-----
T ss_pred             hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhh
Confidence            888888888888888888888888888888888887765443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=9.3e-14  Score=108.27  Aligned_cols=101  Identities=15%  Similarity=0.061  Sum_probs=92.7

Q ss_pred             HHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcC
Q 024531           84 DRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGE  163 (266)
Q Consensus        84 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l  163 (266)
                      ..+.++|.+++..|+|++|+..|++||+++|+...                 +++++|.||.++|++++|+.+|++++..
T Consensus        37 ~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~-----------------a~~~~g~~~~~~g~~~~A~~~~~kAl~~   99 (192)
T d1hh8a_          37 RICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV-----------------AYFQRGMLYYQTEKYDLAIKDLKEALIQ   99 (192)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhh-----------------hHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence            45789999999999999999999999999999665                 7999999999999999999999999987


Q ss_pred             CCCc----------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 024531          164 DENN----------------VKALFRRGKARAELGQTDAAREDFLKAGKFAPED  201 (266)
Q Consensus       164 ~p~~----------------~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~  201 (266)
                      .|.+                ..+++++|.++..+|++++|++.|.+++.+.|+.
T Consensus       100 ~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_         100 LRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             CccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            5543                4789999999999999999999999999999874

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=8.1e-15  Score=123.17  Aligned_cols=156  Identities=12%  Similarity=0.065  Sum_probs=116.2

Q ss_pred             HHHHHHHHHHhHHHHhhc-cHHHHHHHHHHHHhhhccchhhhh------------chhHHHH-----HHHhhhhhhhhHH
Q 024531           80 IGAADRRKMDGNALFKEE-KLEEAMQQYEMAIAYMGDDFMFQL------------FGKYRDM-----ALAVKNPCHLNMA  141 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g-~~~~A~~~y~~al~~~~~~~~~~~------------~~~~~~~-----~~~l~~~~~~n~a  141 (266)
                      +.....+..+|.++...| ++++|+..|.+++..+|.....-.            .+.....     ...-...++.++|
T Consensus        74 P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~  153 (315)
T d2h6fa1          74 AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQ  153 (315)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHH
Confidence            455667778888887765 588888888888888887543310            1111110     1112355899999


Q ss_pred             HHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCC------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 024531          142 ACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQ------TDAAREDFLKAGKFAPEDKSIARELRLLAEHE  215 (266)
Q Consensus       142 ~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~------~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  215 (266)
                      .++..+|++++|+.+|+++|+++|.+..+|+++|.++..++.      +++|+..+.+++.++|+|..+...++.+....
T Consensus       154 ~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~  233 (315)
T d2h6fa1         154 WVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDR  233 (315)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTT
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999998887      68999999999999999999999888775332


Q ss_pred             HHHHHHHHHHHhcccCCCCCCc
Q 024531          216 KAVYKKQKEIYKGIFGPRPEPK  237 (266)
Q Consensus       216 ~~~~~~~~~~~~k~~~~~~~~~  237 (266)
                      +-  ......+.......+...
T Consensus       234 ~~--~~~~~~~~~~~~l~~~~~  253 (315)
T d2h6fa1         234 GL--SKYPNLLNQLLDLQPSHS  253 (315)
T ss_dssp             CG--GGCHHHHHHHHHHTTTCC
T ss_pred             Ch--HHHHHHHHHHHHhCCCcC
Confidence            22  333444556655444433

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.49  E-value=2.4e-13  Score=96.50  Aligned_cols=92  Identities=17%  Similarity=0.147  Sum_probs=85.6

Q ss_pred             hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 024531          136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE  215 (266)
Q Consensus       136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  215 (266)
                      ..+++|.++++.|++.+|+..+++++..+|+++.+++.+|.++..+|++++|+.+|+++++++|++..++..++.+...+
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHhc
Q 024531          216 KAVYKKQKEIYKG  228 (266)
Q Consensus       216 ~~~~~~~~~~~~k  228 (266)
                      ++..++.+. +++
T Consensus        98 g~~~~A~~~-l~~  109 (112)
T d1hxia_          98 HNANAALAS-LRA  109 (112)
T ss_dssp             HHHHHHHHH-HHH
T ss_pred             CCHHHHHHH-HHH
Confidence            888776554 444

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.4e-13  Score=97.28  Aligned_cols=99  Identities=16%  Similarity=0.068  Sum_probs=91.0

Q ss_pred             hhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 024531          137 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEK  216 (266)
Q Consensus       137 ~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~  216 (266)
                      +.+.|..+++.|+|++|+..|+++|.++|+++.+|+.+|.+|..+|++++|+.+|.+++.++|+++.++..++.+...++
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~   85 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN   85 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHHHHHhcccCCCCCC
Q 024531          217 AVYKKQKEIYKGIFGPRPEP  236 (266)
Q Consensus       217 ~~~~~~~~~~~k~~~~~~~~  236 (266)
                      +..++... |.+.+...|..
T Consensus        86 ~~~~A~~~-~~~a~~~~p~~  104 (117)
T d1elwa_          86 RFEEAKRT-YEEGLKHEANN  104 (117)
T ss_dssp             CHHHHHHH-HHHHHTTCTTC
T ss_pred             CHHHHHHH-HHHHHHhCCCC
Confidence            88766665 78888766654

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=4e-13  Score=111.85  Aligned_cols=99  Identities=15%  Similarity=0.067  Sum_probs=94.2

Q ss_pred             HHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCC
Q 024531           87 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDEN  166 (266)
Q Consensus        87 ~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~  166 (266)
                      .++|..++..|+|++|+..|+++++.+|....                 ++.++|.++...|++++|+..+.++++++|+
T Consensus        23 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~-----------------a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~   85 (323)
T d1fcha_          23 FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHME-----------------AWQYLGTTQAENEQELLAISALRRCLELKPD   85 (323)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHcCChHHHHHHHHhhhccccc
Confidence            57899999999999999999999999999765                 6999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 024531          167 NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDK  202 (266)
Q Consensus       167 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~  202 (266)
                      +..+++.+|.++..+|++++|++.+++++.++|.+.
T Consensus        86 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~  121 (323)
T d1fcha_          86 NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYA  121 (323)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTG
T ss_pred             cccccccccccccccccccccccchhhHHHhccchH
Confidence            999999999999999999999999999999998753

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.44  E-value=3e-13  Score=105.07  Aligned_cols=97  Identities=10%  Similarity=0.003  Sum_probs=89.0

Q ss_pred             hhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 024531          137 HLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEK  216 (266)
Q Consensus       137 ~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~  216 (266)
                      +.+.|..+++.|+|++|+..|++||.++|+++.+|+++|.||..+|+|++|+.+|++|++++|++..++..++.+...++
T Consensus         7 l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~   86 (201)
T d2c2la1           7 LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEME   86 (201)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHHhcccCCCC
Q 024531          217 AVYKKQKEIYKGIFGPRP  234 (266)
Q Consensus       217 ~~~~~~~~~~~k~~~~~~  234 (266)
                      +..++... |++++...|
T Consensus        87 ~~~~A~~~-~~~al~l~p  103 (201)
T d2c2la1          87 SYDEAIAN-LQRAYSLAK  103 (201)
T ss_dssp             CHHHHHHH-HHHHHHHHH
T ss_pred             CHHHHHHH-HHHHHHhCc
Confidence            88776654 677765443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=3.4e-13  Score=92.83  Aligned_cols=88  Identities=11%  Similarity=-0.002  Sum_probs=65.0

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  162 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~  162 (266)
                      ++..++.|..+++.|+|..|+..|++|+++.|.......          -...++.|+|.|+.++|++++|+.+++++|+
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~----------~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~   74 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTI----------DKVSVLDYLSYAVYQQGDLDKALLLTKKLLE   74 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSS----------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCc----------cHHHHHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence            566789999999999999999999999999876432100          0123577777777777777777777777777


Q ss_pred             CCCCchHHHHHHHHHHHH
Q 024531          163 EDENNVKALFRRGKARAE  180 (266)
Q Consensus       163 l~p~~~~a~~~~g~~~~~  180 (266)
                      ++|+++.++.+++.....
T Consensus        75 l~P~~~~a~~Nl~~~~~~   92 (95)
T d1tjca_          75 LDPEHQRANGNLKYFEYI   92 (95)
T ss_dssp             HCTTCHHHHHHHHHHHHH
T ss_pred             hCcCCHHHHHHHHHHHHH
Confidence            777777777777655443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=9.3e-13  Score=99.14  Aligned_cols=101  Identities=17%  Similarity=0.020  Sum_probs=91.2

Q ss_pred             hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 024531          136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHE  215 (266)
Q Consensus       136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  215 (266)
                      .+...|..+++.|+|++|+..|++++.++|+++.+|+++|.+++.+|++++|+.+|+++++++|++..++..++.+...+
T Consensus        12 ~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~   91 (159)
T d1a17a_          12 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL   91 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHc
Confidence            36678999999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHHHhcccCCCCCCc
Q 024531          216 KAVYKKQKEIYKGIFGPRPEPK  237 (266)
Q Consensus       216 ~~~~~~~~~~~~k~~~~~~~~~  237 (266)
                      ++..++... |.+++...+...
T Consensus        92 g~~~eA~~~-~~~a~~~~p~~~  112 (159)
T d1a17a_          92 GKFRAALRD-YETVVKVKPHDK  112 (159)
T ss_dssp             TCHHHHHHH-HHHHHHHSTTCH
T ss_pred             CCHHHHHHH-HHHHHHcCCCCH
Confidence            888766555 778776655543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=6.2e-13  Score=91.47  Aligned_cols=80  Identities=15%  Similarity=0.027  Sum_probs=72.5

Q ss_pred             hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCc-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 024531          136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENN-------VKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIAREL  208 (266)
Q Consensus       136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~-------~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l  208 (266)
                      -++++|.++.+.|+|..|+..+++|+++.|.+       ..+++++|.++..+|++++|+..|+++++++|+++.+...+
T Consensus         7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl   86 (95)
T d1tjca_           7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL   86 (95)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHH
Confidence            37799999999999999999999999886543       67899999999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 024531          209 RLLAEHE  215 (266)
Q Consensus       209 ~~l~~~~  215 (266)
                      ..+...+
T Consensus        87 ~~~~~~l   93 (95)
T d1tjca_          87 KYFEYIM   93 (95)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            8776544

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.40  E-value=9.8e-12  Score=95.46  Aligned_cols=121  Identities=13%  Similarity=0.050  Sum_probs=104.1

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhh-----chhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHH
Q 024531           80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQL-----FGKYRDMALAVKNPCHLNMAACLLKLKRYEEAI  154 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~  154 (266)
                      +...+.+...|..++..|++++|+..|.+|+.+.+.......     .......+......++.+++.++..+|++++|+
T Consensus         8 ~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al   87 (179)
T d2ff4a2           8 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI   87 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence            456788899999999999999999999999999876543221     122334456667788999999999999999999


Q ss_pred             HHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH-------HhhCCC
Q 024531          155 GQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKA-------GKFAPE  200 (266)
Q Consensus       155 ~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a-------l~l~p~  200 (266)
                      .++++++.++|.+..+|..++.++..+|++.+|+..|+++       +-++|+
T Consensus        88 ~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~  140 (179)
T d2ff4a2          88 AELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG  140 (179)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence            9999999999999999999999999999999999999998       556775

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=2.6e-12  Score=93.27  Aligned_cols=96  Identities=16%  Similarity=0.120  Sum_probs=78.2

Q ss_pred             hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH---
Q 024531          136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLA---  212 (266)
Q Consensus       136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~---  212 (266)
                      .+.++|.+++..|+|++|+.+|+++|.++|+++.+++++|.||..+|+|++|+.+|+++++++|++......++.+.   
T Consensus         6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l   85 (128)
T d1elra_           6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (128)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999998876555555443   


Q ss_pred             ----HHHHHHHHHHHHHHhcccCC
Q 024531          213 ----EHEKAVYKKQKEIYKGIFGP  232 (266)
Q Consensus       213 ----~~~~~~~~~~~~~~~k~~~~  232 (266)
                          ..++...++. ..|.+.+..
T Consensus        86 g~~~~~~~~~~~A~-~~~~kal~~  108 (128)
T d1elra_          86 GNSYFKEEKYKDAI-HFYNKSLAE  108 (128)
T ss_dssp             HHHHHHTTCHHHHH-HHHHHHHHH
T ss_pred             HHHHHHhCCHHHHH-HHHHHHHhc
Confidence                3333333333 345665543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.20  E-value=4.3e-11  Score=90.70  Aligned_cols=92  Identities=12%  Similarity=0.006  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531           80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  159 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~  159 (266)
                      +..+..+.++|.++++.|+|++|+..|+++|+++|....                 +++++|.+|..+|++++|+.+|++
T Consensus        74 ~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~-----------------a~~~~g~~~~~l~~~~~A~~~~~~  136 (169)
T d1ihga1          74 PVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTK-----------------ALYRRAQGWQGLKEYDQALADLKK  136 (169)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhh-----------------HHHhHHHHHHHccCHHHHHHHHHH
Confidence            345566778899999999999999999999999998655                 699999999999999999999999


Q ss_pred             HhcCCCCchHHHHHHHHHHHHcCCHHHHH
Q 024531          160 VLGEDENNVKALFRRGKARAELGQTDAAR  188 (266)
Q Consensus       160 al~l~p~~~~a~~~~g~~~~~~g~~~~A~  188 (266)
                      +++++|++..++..++.+...+..+.++.
T Consensus       137 al~l~p~n~~~~~~l~~~~~~l~~~~~~~  165 (169)
T d1ihga1         137 AQEIAPEDKAIQAELLKVKQKIKAQKDKE  165 (169)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999988877776654

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=5.1e-11  Score=105.65  Aligned_cols=108  Identities=7%  Similarity=-0.033  Sum_probs=79.0

Q ss_pred             HHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCC
Q 024531           86 RKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDE  165 (266)
Q Consensus        86 ~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p  165 (266)
                      +...|..+...|++..|+..|.+++..++.                   .++.++|.++...++|++|+.+|.+|+.++|
T Consensus       123 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~-------------------~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P  183 (497)
T d1ya0a1         123 SSQLGIISNKQTHTSAIVKPQSSSCSYICQ-------------------HCLVHLGDIARYRNQTSQAESYYRHAAQLVP  183 (497)
T ss_dssp             --------------------CCHHHHHHHH-------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHhHHHHHhCCCHHHHHHHHHHHhCCCHH-------------------HHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence            334444444455555555555554444332                   3688999999999999999999999999999


Q ss_pred             CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024531          166 NNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLA  212 (266)
Q Consensus       166 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  212 (266)
                      ++..+|+++|.++...|++.+|+.+|.+++.++|..+.++..|..+.
T Consensus       184 ~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~  230 (497)
T d1ya0a1         184 SNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL  230 (497)
T ss_dssp             TBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998764

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.17  E-value=2.5e-11  Score=86.49  Aligned_cols=59  Identities=34%  Similarity=0.617  Sum_probs=54.7

Q ss_pred             ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeecc
Q 024531            2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD   63 (266)
Q Consensus         2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~~   63 (266)
                      .+|.+ ++|+||+.+|..|+.||++.|.+.|.++||..|.  ++.|||++.+.|+|+|++|.
T Consensus        59 ~~g~~-~vi~G~~~~l~~M~~Ge~~~~~ipp~laYG~~g~--~~~IPp~s~l~f~IeLl~f~  117 (118)
T d1r9ha_          59 NLGRG-NVIKGWDLGVATMTKGEVAEFTIRSDYGYGDAGS--PPKIPGGATLIFEVELFEWS  117 (118)
T ss_dssp             ETTTT-SSCHHHHHHHTTCCBTCEEEEEECGGGTTTTTCB--TTTBCTTCCEEEEEEEEEEE
T ss_pred             eccCc-ceeeeeeeeeeeecCCceEEEEECHHHhCCcCCC--CCccCcCCcEEEEEEEEEEe
Confidence            47877 7999999999999999999999999999999998  56899999999999999874

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.16  E-value=2.8e-10  Score=86.09  Aligned_cols=89  Identities=12%  Similarity=0.037  Sum_probs=79.4

Q ss_pred             HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhH
Q 024531           81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  160 (266)
Q Consensus        81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~a  160 (266)
                      ..+..+.++|.++++.|+|.+|+..+.+++.++|....                 +++++|.++..+|++++|+.+|.++
T Consensus        62 ~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~-----------------a~~~~~~~~~~l~~~~~A~~~~~~a  124 (168)
T d1kt1a1          62 FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEK-----------------GLYRRGEAQLLMNEFESAKGDFEKV  124 (168)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            34556778999999999999999999999999998655                 7999999999999999999999999


Q ss_pred             hcCCCCchHHHHHHHHHHHHcCCHHH
Q 024531          161 LGEDENNVKALFRRGKARAELGQTDA  186 (266)
Q Consensus       161 l~l~p~~~~a~~~~g~~~~~~g~~~~  186 (266)
                      +.++|++..++..++.+...++.+.+
T Consensus       125 l~l~P~n~~~~~~l~~~~~~~~~~~e  150 (168)
T d1kt1a1         125 LEVNPQNKAARLQIFMCQKKAKEHNE  150 (168)
T ss_dssp             HHSCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHhHHH
Confidence            99999999999999888776666544

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1.7e-10  Score=87.60  Aligned_cols=92  Identities=13%  Similarity=0.021  Sum_probs=82.5

Q ss_pred             HHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhH
Q 024531           81 GAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLV  160 (266)
Q Consensus        81 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~a  160 (266)
                      -....+..+|.++++.|+|++|+..+.++|.++|.+..                 +++++|.||..+|++++|+.+|+++
T Consensus        60 ~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~-----------------a~~~~g~~~~~~g~~~~A~~~~~~a  122 (170)
T d1p5qa1          60 LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEK-----------------GLSRRGEAHLAVNDFELARADFQKV  122 (170)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhhhhcccccchhhhhhhccccchh-----------------hhHHHHHHHHHhhhHHHHHHHHHHH
Confidence            33456678999999999999999999999999998655                 6999999999999999999999999


Q ss_pred             hcCCCCchHHHHHHHHHHHHcCCHHHHHH
Q 024531          161 LGEDENNVKALFRRGKARAELGQTDAARE  189 (266)
Q Consensus       161 l~l~p~~~~a~~~~g~~~~~~g~~~~A~~  189 (266)
                      ++++|+++.+...++.++..++++.+...
T Consensus       123 l~l~P~n~~~~~~l~~~~~~~~~~~~~e~  151 (170)
T d1p5qa1         123 LQLYPNNKAAKTQLAVCQQRIRRQLAREK  151 (170)
T ss_dssp             HHHCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999888877766543

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.13  E-value=3e-11  Score=85.14  Aligned_cols=58  Identities=38%  Similarity=0.623  Sum_probs=50.2

Q ss_pred             ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeec
Q 024531            2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF   62 (266)
Q Consensus         2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~   62 (266)
                      .+|.+ ++|+||+.+|..|+.||++.|.|+|.++||..|.  ++.|||++++.|+|+|+++
T Consensus        53 ~lg~~-~~i~G~~~~l~~M~~Ge~~~~~ip~~layG~~g~--~~~IPp~s~lif~ieLl~i  110 (111)
T d1kt1a2          53 SIGKG-QVIKAWDIGVATMKKGEICHLLCKPEYAYGATGS--LPKIPSNATLFFEVELLDF  110 (111)
T ss_dssp             ETTSS-SSCHHHHHSTTTCCTTCCEEEEC----CCCTTTC--TTTSCTTCCCEEEEEEEEE
T ss_pred             ecCCC-cEEeeeeeeehhccCCcEEEEEECHHHhCCCCCC--CCcCCcCCeEEEEEEEEEE
Confidence            47877 7999999999999999999999999999999998  5689999999999999976

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=6.5e-11  Score=82.84  Aligned_cols=58  Identities=33%  Similarity=0.581  Sum_probs=53.8

Q ss_pred             ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeec
Q 024531            2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF   62 (266)
Q Consensus         2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~   62 (266)
                      ++|.+ ++|+||+.++..|+.||++.|.|+|.++||..|.  ++.|||++++.|+++|+++
T Consensus        49 ~~g~~-~~i~G~~~~l~~M~~Ge~~~~~ip~~laYG~~g~--~~~IPp~s~lif~ieL~~v  106 (107)
T d2ppna1          49 MLGKQ-EVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGH--PGIIPPHATLVFDVELLKL  106 (107)
T ss_dssp             ETTSC-CSCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCB--TTTBCTTCCEEEEEEEEEE
T ss_pred             eeCcc-hhheeehhhhcCccCCCEEEEEECHHHhCCCCCC--CCCCCcCCeEEEEEEEEEE
Confidence            47877 7999999999999999999999999999999997  5679999999999999876

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.10  E-value=2.1e-10  Score=85.49  Aligned_cols=84  Identities=10%  Similarity=-0.002  Sum_probs=76.3

Q ss_pred             HHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh
Q 024531           82 AADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL  161 (266)
Q Consensus        82 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al  161 (266)
                      .+..+.++|..+++.|+|++|+..|+++|.++|.+..                 +++++|.+|..+|++++|+.+|.+++
T Consensus        66 ~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~k-----------------a~~~~g~~~~~lg~~~~A~~~~~~al  128 (153)
T d2fbna1          66 EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVK-----------------ALYKLGVANMYFGFLEEAKENLYKAA  128 (153)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH-----------------HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHhcccchhhhhhhccccccchhhh-----------------hhHHhHHHHHHcCCHHHHHHHHHHHH
Confidence            3556778999999999999999999999999998654                 79999999999999999999999999


Q ss_pred             cCCCCchHHHHHHHHHHHHcC
Q 024531          162 GEDENNVKALFRRGKARAELG  182 (266)
Q Consensus       162 ~l~p~~~~a~~~~g~~~~~~g  182 (266)
                      +++|++..+...++.+...++
T Consensus       129 ~l~P~n~~~~~~l~~~~~kl~  149 (153)
T d2fbna1         129 SLNPNNLDIRNSYELCVNKLK  149 (153)
T ss_dssp             HHSTTCHHHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHHH
Confidence            999999999998888876554

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.08  E-value=9e-11  Score=83.27  Aligned_cols=57  Identities=30%  Similarity=0.561  Sum_probs=51.5

Q ss_pred             CccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeeccc
Q 024531            7 KKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDE   64 (266)
Q Consensus         7 ~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~~~   64 (266)
                      ..+|+||+.+|.+|+.||++.|.|+|.++||..|.+ ...|||++++.|+|+|+++.+
T Consensus        58 ~~vi~G~~~~l~~M~~Ge~~~v~ip~~~ayG~~g~~-~~~Ipp~a~l~f~ieLl~~~k  114 (115)
T d1kt1a3          58 HDIPIGIDKALEKMQREEQCILHLGPRYGFGEAGKP-KFGIEPNAELIYEVTLKSFEK  114 (115)
T ss_dssp             GTCCHHHHHHHTTCCTTCEEEEEECGGGSSCTTCBT-TTTBCTTCCEEEEEEEEEEEC
T ss_pred             cccCchhHhhhccchhhceeEEEeCHHHCcCCCCCC-CCCcCcCCeEEEEEEEEEEEe
Confidence            368999999999999999999999999999999972 236999999999999998865

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.08  E-value=1.7e-10  Score=85.32  Aligned_cols=96  Identities=11%  Similarity=0.106  Sum_probs=80.6

Q ss_pred             HHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024531          142 ACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAEL----------GQTDAAREDFLKAGKFAPEDKSIARELRLL  211 (266)
Q Consensus       142 ~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~----------g~~~~A~~~~~~al~l~p~~~~~~~~l~~l  211 (266)
                      ..+.+++.|++|+..|+++++++|+++.+++++|.++..+          +.+++|+..|+++++++|++..+...++.+
T Consensus         5 ~~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~   84 (145)
T d1zu2a1           5 TEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNA   84 (145)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHH
Confidence            3456788899999999999999999999999999999855          555899999999999999999999999998


Q ss_pred             HHHHHH----------HHHHHHHHHhcccCCCCCCc
Q 024531          212 AEHEKA----------VYKKQKEIYKGIFGPRPEPK  237 (266)
Q Consensus       212 ~~~~~~----------~~~~~~~~~~k~~~~~~~~~  237 (266)
                      ...+.+          .-......|++.+...|...
T Consensus        85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~  120 (145)
T d1zu2a1          85 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT  120 (145)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHH
Confidence            766543          23455667888887777654

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=1e-10  Score=83.45  Aligned_cols=59  Identities=37%  Similarity=0.594  Sum_probs=54.9

Q ss_pred             ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeecc
Q 024531            2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD   63 (266)
Q Consensus         2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~~   63 (266)
                      ++|.+ ++|+||+.+|..|+.||++.|.|.|.++||..|.  ++.|||++.+.|+|+|+++.
T Consensus        60 ~~g~~-~~i~G~~~~l~~M~~Ge~~~~~ip~~laYG~~g~--~~~IPp~s~LifeIeLl~v~  118 (120)
T d1q1ca1          60 DLGKG-EVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGS--PPKIPPNATLVFEVELFEFK  118 (120)
T ss_dssp             ETTTT-SSCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCB--TTTBCTTCCEEEEEEEEEEE
T ss_pred             ecCCC-ceeeeeeeeeccccCCcEEEEEECHHHhCCCcCC--CCCCCcCCcEEEEEEEEEEe
Confidence            47887 7999999999999999999999999999999998  67899999999999999874

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.07  E-value=4.2e-10  Score=92.47  Aligned_cols=143  Identities=13%  Similarity=0.037  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHh
Q 024531           80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSL  159 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~  159 (266)
                      .+.++.+...|+.+...++|++|+..|.+|+++.+....           ..-...++.++|.||.++|++++|+.++++
T Consensus        34 ~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~-----------~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~  102 (290)
T d1qqea_          34 EEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGN-----------EDEAGNTYVEAYKCFKSGGNSVNAVDSLEN  102 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC-----------CHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence            455778888999999999999999999999998654221           011344799999999999999999999999


Q ss_pred             HhcCCCCc------hHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024531          160 VLGEDENN------VKALFRRGKARAE-LGQTDAAREDFLKAGKFAPED------KSIARELRLLAEHEKAVYKKQKEIY  226 (266)
Q Consensus       160 al~l~p~~------~~a~~~~g~~~~~-~g~~~~A~~~~~~al~l~p~~------~~~~~~l~~l~~~~~~~~~~~~~~~  226 (266)
                      ++.+.+..      ..++.++|.++.. +|++++|+..|++++.+.+.+      ..+...++.+...+++..++... |
T Consensus       103 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~-~  181 (290)
T d1qqea_         103 AIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI-Y  181 (290)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH-H
T ss_pred             hhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHH-H
Confidence            99886554      5678899998865 699999999999999885532      34456677777777766655554 6


Q ss_pred             hcccCCCC
Q 024531          227 KGIFGPRP  234 (266)
Q Consensus       227 ~k~~~~~~  234 (266)
                      .++....+
T Consensus       182 ~~~~~~~~  189 (290)
T d1qqea_         182 SKLIKSSM  189 (290)
T ss_dssp             HHHHHTTS
T ss_pred             HHHHHhCc
Confidence            66654433

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.05  E-value=1.7e-10  Score=81.49  Aligned_cols=58  Identities=26%  Similarity=0.478  Sum_probs=53.6

Q ss_pred             ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeec
Q 024531            2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF   62 (266)
Q Consensus         2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~   62 (266)
                      ++|.+ ++|+||+.++..|+.||++.|.++|.++||..|.  ++.||+++++.|+++|+++
T Consensus        55 ~~~~~-~~i~G~~~~l~~M~~G~~~~~~iP~~laYG~~g~--~~~IP~~s~Lif~ieLl~I  112 (113)
T d1yata_          55 NIGVG-QVIKGWDVGIPKLSVGEKARLTIPGPYAYGPRGF--PGLIPPNSTLVFDVELLKV  112 (113)
T ss_dssp             ETTSS-SSCHHHHHHGGGCCTTCEEEEEECGGGTTTTTCB--TTTBCTTCCEEEEEEEEEE
T ss_pred             eeccC-ceeeehhhhcccccCCCEEEEEechHHeecCcCC--CCccCcCCeEEEEEEEEEe
Confidence            46777 7999999999999999999999999999999998  5679999999999999876

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=1.4e-10  Score=82.31  Aligned_cols=60  Identities=33%  Similarity=0.500  Sum_probs=53.8

Q ss_pred             ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeecc
Q 024531            2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFD   63 (266)
Q Consensus         2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~~   63 (266)
                      ++|.+ ++|+||+.++..|+.||++.|.|+|.++||..|.+ ...|||++.+.|+|+|++++
T Consensus        57 ~lg~~-~~i~Gl~~~v~~M~~Ge~~~~~ip~~~ayG~~g~~-~~~Ipp~s~L~feieLl~ve  116 (116)
T d1pbka_          57 KVGVG-KVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQP-DAKIPPNAKLTFEVELVDID  116 (116)
T ss_dssp             ETTTT-SSCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCBG-GGTBCTTCCEEEEEEEEEEC
T ss_pred             eeccc-ccccchheechhhcCCcEEEEEECHHHhCCccCCC-CCCcCcCCeEEEEEEEEEEC
Confidence            47888 79999999999999999999999999999998872 24699999999999998763

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=2.8e-10  Score=81.53  Aligned_cols=101  Identities=8%  Similarity=-0.025  Sum_probs=85.5

Q ss_pred             hhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHH
Q 024531          138 LNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAEL---GQTDAAREDFLKAGKFAPED--KSIARELRLLA  212 (266)
Q Consensus       138 ~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~---g~~~~A~~~~~~al~l~p~~--~~~~~~l~~l~  212 (266)
                      .+++..+...+++++|.+.|+++|.++|+++.+++++|.|+...   +++++|+..|++++..+|.+  ..++..|+.++
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            46777888999999999999999999999999999999999864   55668999999999999865  45788999998


Q ss_pred             HHHHHHHHHHHHHHhcccCCCCCCccc
Q 024531          213 EHEKAVYKKQKEIYKGIFGPRPEPKQK  239 (266)
Q Consensus       213 ~~~~~~~~~~~~~~~k~~~~~~~~~~~  239 (266)
                      ..+++..++. ..|.+++...|.....
T Consensus        83 ~~~g~~~~A~-~~~~~aL~~~P~~~~A  108 (122)
T d1nzna_          83 YRLKEYEKAL-KYVRGLLQTEPQNNQA  108 (122)
T ss_dssp             HHTTCHHHHH-HHHHHHHHHCTTCHHH
T ss_pred             HHHhhhHHHH-HHHHHHHHhCcCCHHH
Confidence            8888876655 4589999887766543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.97  E-value=5.6e-09  Score=85.55  Aligned_cols=144  Identities=15%  Similarity=0.031  Sum_probs=104.5

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHH-hhCHHHHHHHHH
Q 024531           80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLK-LKRYEEAIGQCS  158 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~-~~~~~~A~~~~~  158 (266)
                      ...+..+.+.|+++...|++++|+..|.+++.+.+.....           .....++.++|.+|.. .|++++|+..++
T Consensus        74 ~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~  142 (290)
T d1qqea_          74 DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF-----------RRGANFKFELGEILENDLHDYAKAIDCYE  142 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-----------HHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccc-----------hhHHHHHHHHHHhHhhHHHHHHHHHHHHH
Confidence            3456778899999999999999999999999988764321           1123468888988855 699999999999


Q ss_pred             hHhcCCCC------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 024531          159 LVLGEDEN------NVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKS-------IARELRLLAEHEKAVYKKQKEI  225 (266)
Q Consensus       159 ~al~l~p~------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~-------~~~~l~~l~~~~~~~~~~~~~~  225 (266)
                      +++++.+.      ...++.++|.++..+|+|++|+..|++++...|.+..       ....+..+....... ......
T Consensus       143 ~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~-~~A~~~  221 (290)
T d1qqea_         143 LAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDA-VAAART  221 (290)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCH-HHHHHH
T ss_pred             HHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccH-HHHHHH
Confidence            99977432      2466889999999999999999999999999887642       222333333333333 334455


Q ss_pred             HhcccCCCCC
Q 024531          226 YKGIFGPRPE  235 (266)
Q Consensus       226 ~~k~~~~~~~  235 (266)
                      +.+.....+.
T Consensus       222 ~~~~~~~~~~  231 (290)
T d1qqea_         222 LQEGQSEDPN  231 (290)
T ss_dssp             HHGGGCC---
T ss_pred             HHHHHHhCCC
Confidence            6777666544

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.96  E-value=1.7e-08  Score=83.91  Aligned_cols=119  Identities=8%  Similarity=-0.133  Sum_probs=76.0

Q ss_pred             cHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHH----------HHHhhCHHHHHHHHHhHhcCCCCc
Q 024531           98 KLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAAC----------LLKLKRYEEAIGQCSLVLGEDENN  167 (266)
Q Consensus        98 ~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~----------~~~~~~~~~A~~~~~~al~l~p~~  167 (266)
                      ..++|+..|.++|..+|++..                 ++++++.+          +...+.+.+|+.++++++..+|.+
T Consensus        44 ~~~~al~~~~~~l~~~P~~~~-----------------a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~  106 (334)
T d1dcea1          44 LDESVLELTSQILGANPDFAT-----------------LWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS  106 (334)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             ccHHHHHHHHHHHHHCCCcHH-----------------HHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            358999999999999999754                 23333333          333444677777777777777777


Q ss_pred             hHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHhcccCCCC
Q 024531          168 VKALFRRGKARAELGQ--TDAAREDFLKAGKFAPEDKSIARE-LRLLAEHEKAVYKKQKEIYKGIFGPRP  234 (266)
Q Consensus       168 ~~a~~~~g~~~~~~g~--~~~A~~~~~~al~l~p~~~~~~~~-l~~l~~~~~~~~~~~~~~~~k~~~~~~  234 (266)
                      ..+++.+|.++..++.  +++|+..++++++++|.+..+... +..+....+... +.-..+.+++...+
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~-~Al~~~~~~i~~~p  175 (334)
T d1dcea1         107 YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPA-EELAFTDSLITRNF  175 (334)
T ss_dssp             HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHH-HHHHHHHTTTTTTC
T ss_pred             HHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccH-HHHHHHHHHHHcCC
Confidence            7777777777766654  677777777777777777666433 333333333332 33344566665444

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.96  E-value=1.5e-09  Score=81.19  Aligned_cols=63  Identities=21%  Similarity=0.425  Sum_probs=56.3

Q ss_pred             ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeecccccc
Q 024531            2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETKE   67 (266)
Q Consensus         2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~~~~~~   67 (266)
                      ++|.+ ++|+||+.+|..|+.||.+.|.|+|.++||..|.  .+.|||++.++|+|+|+++.+...
T Consensus        81 ~~~~~-~~i~G~~e~l~~M~~Ge~~~v~iPp~laYG~~g~--~~~IPp~s~LifeIeLl~i~~~~~  143 (160)
T d1jvwa_          81 TFRPN-EVIKGWTEALQLMREGDRWRLFIPYDLAYGVTGG--GGMIPPYSPLEFDVELISIKDGGK  143 (160)
T ss_dssp             EECGG-GSCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCS--SSSSCTTCCEEEEEEEEEEGGGCC
T ss_pred             ccCcc-ccchhHHHHhcCccccceeEEEeCHHHCcCCCCC--CCCcCcCCcEEEEEEEEEEecCCC
Confidence            35666 7999999999999999999999999999999987  567999999999999999976543

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.94  E-value=1.5e-09  Score=90.59  Aligned_cols=109  Identities=12%  Similarity=-0.012  Sum_probs=90.4

Q ss_pred             HHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHH
Q 024531           93 LFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALF  172 (266)
Q Consensus        93 ~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~  172 (266)
                      +...+.++.|+..|.+++...|....                 .+.+++.++...+++.+|+..+.+++..+|.+..+++
T Consensus       218 ~~~l~~~~~a~~~~~~~l~~~~~~~~-----------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~  280 (334)
T d1dcea1         218 AFFTDPNDQSAWFYHRWLLGRAEPLF-----------------RCELSVEKSTVLQSELESCKELQELEPENKWCLLTII  280 (334)
T ss_dssp             HHHHCSSCSHHHHHHHHHHSCCCCSS-----------------SCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHhcchhHHHHHHHHHHHhCcchhh-----------------HHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHH
Confidence            34445555666666666666665443                 5788999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 024531          173 RRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAV  218 (266)
Q Consensus       173 ~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~  218 (266)
                      .+|.++..+|++++|+.+|+++++++|.+...+..|+.........
T Consensus       281 ~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~e~~~  326 (334)
T d1dcea1         281 LLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSV  326 (334)
T ss_dssp             HHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhHhhHH
Confidence            9999999999999999999999999999999988887665444333

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=6.4e-10  Score=78.98  Aligned_cols=58  Identities=28%  Similarity=0.445  Sum_probs=52.6

Q ss_pred             ccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeeccccc
Q 024531            8 KEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDETK   66 (266)
Q Consensus         8 ~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~~~~~   66 (266)
                      ++|+||+.+|..|+.||++.|.|+|.++||..|.+ ...|||++++.|+++|+++.+.+
T Consensus        59 ~~i~Gl~~~l~~M~~Ge~~~i~ip~~~ayG~~g~~-~~~Ipp~s~l~f~veL~~~~~~k  116 (117)
T d1q1ca2          59 DLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKE-KFQIPPNAELKYELHLKSFEKAK  116 (117)
T ss_dssp             TCCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCBG-GGTBCTTCCEEEEEEEEEEECCC
T ss_pred             eeCcHHHHhhhcchhhCeEEEEECHHHhCcccCCC-CCccCcCCeEEEEEEEEEEEeCC
Confidence            68999999999999999999999999999999972 33699999999999999987654

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.92  E-value=4.1e-09  Score=74.46  Aligned_cols=81  Identities=14%  Similarity=0.106  Sum_probs=71.3

Q ss_pred             hhhhHHHHHHHhh---CHHHHHHHHHhHhcCCCCch-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024531          136 CHLNMAACLLKLK---RYEEAIGQCSLVLGEDENNV-KALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLL  211 (266)
Q Consensus       136 ~~~n~a~~~~~~~---~~~~A~~~~~~al~l~p~~~-~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l  211 (266)
                      ..++.|.|+.+..   +..+|+..+..+++.+|.+. .++|.+|.+|+++|+|++|..+++++|+++|+|..+......+
T Consensus        37 t~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~~I  116 (124)
T d2pqrb1          37 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV  116 (124)
T ss_dssp             HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHHHH
Confidence            5788999998654   57899999999999998764 8999999999999999999999999999999999998877777


Q ss_pred             HHHHH
Q 024531          212 AEHEK  216 (266)
Q Consensus       212 ~~~~~  216 (266)
                      ..+..
T Consensus       117 e~~~~  121 (124)
T d2pqrb1         117 EDKIQ  121 (124)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            65544

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

Probab=98.89  E-value=9.2e-10  Score=85.83  Aligned_cols=59  Identities=20%  Similarity=0.309  Sum_probs=53.7

Q ss_pred             cCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeeccc
Q 024531            3 LGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDE   64 (266)
Q Consensus         3 lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~~~   64 (266)
                      ++.+ ++|+||+.+|..|+.|+++.|.|+|.++||..|.  ++.|||+++++|+|+|+++.+
T Consensus       145 ~~~~-~~i~G~~e~l~~m~~G~~~~~~iP~~laYG~~g~--~~~Ipp~s~l~feveL~~i~k  203 (204)
T d1fd9a_         145 FQVS-QVIPGWTEALQLMPAGSTWEIYVPSGLAYGPRSV--GGPIGPNETLIFKIHLISVKK  203 (204)
T ss_dssp             EEGG-GSCHHHHHHHTTCCTTCEEEEEECGGGTTTTCCC--SSSCCTTCCEEEEEEEEEEEC
T ss_pred             ecCC-ccchhHHHHhcCCCCCCEEEEEEChHHCcCCCCC--CCCcCcCCcEEEEEEEEEEEc
Confidence            3445 6999999999999999999999999999999998  678999999999999998764

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.81  E-value=1.6e-09  Score=87.97  Aligned_cols=129  Identities=13%  Similarity=-0.020  Sum_probs=95.5

Q ss_pred             HhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCch
Q 024531           89 DGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNV  168 (266)
Q Consensus        89 ~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~  168 (266)
                      ++..++..|++++|+..|.++++..|.+..                 ++.+++.++...|++++|+..++++++++|++.
T Consensus         2 q~~~aL~~G~l~eAl~~l~~al~~~P~d~~-----------------ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~   64 (264)
T d1zbpa1           2 QWKNALSEGQLQQALELLIEAIKASPKDAS-----------------LRSSFIELLCIDGDFERADEQLMQSIKLFPEYL   64 (264)
T ss_dssp             CHHHHTTTTCHHHHHHHHHHHHHTCTTCHH-----------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred             hHHHHHHCCCHHHHHHHHHHHHHHCCCCHH-----------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcH
Confidence            356788999999999999999999999766                 699999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 024531          169 KALFRRGKARAELGQTDAAREDFLKAGKFA-PEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPE  235 (266)
Q Consensus       169 ~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~  235 (266)
                      .++..++.++...+..+++...+.....+. |.+.........+....++. ++....+.++....+.
T Consensus        65 ~~~~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~-~~A~~~~~~a~e~~p~  131 (264)
T d1zbpa1          65 PGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDY-EQVSELALQIEELRQE  131 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHhcCCC
Confidence            999999999988888877776655544443 33333332223332223333 3444446666554443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=4.1e-09  Score=93.16  Aligned_cols=119  Identities=12%  Similarity=-0.003  Sum_probs=70.6

Q ss_pred             hhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHH
Q 024531           95 KEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRR  174 (266)
Q Consensus        95 ~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~  174 (266)
                      ..+.|..|+..|.+++.+.|....                 ++.++|.++.+.|++..|+..+.+++.++|  ..+++++
T Consensus        98 a~~~Y~~ai~~l~~~~~l~~~~~~-----------------~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~L  158 (497)
T d1ya0a1          98 ASGFYTQLLQELCTVFNVDLPCRV-----------------KSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHL  158 (497)
T ss_dssp             HHHHHHHHHHHHTC------------------------------------------------CCHHHHHHH--HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCChhhHH-----------------HHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHHHH
Confidence            345566666666666666655433                 588999999999999999999999998876  4789999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 024531          175 GKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPR  233 (266)
Q Consensus       175 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~  233 (266)
                      |.++..+|+|++|+.+|++|+.++|++..+...|+.+....++..++... |.+.+...
T Consensus       159 G~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~-y~ral~~~  216 (497)
T d1ya0a1         159 GDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFY-YCRSIAVK  216 (497)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHH-HHHHHSSS
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHH-HHHHHhCC
Confidence            99999999999999999999999999999999999998777766655443 55555443

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

Probab=98.72  E-value=8.3e-09  Score=80.63  Aligned_cols=52  Identities=33%  Similarity=0.597  Sum_probs=49.0

Q ss_pred             ccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeec
Q 024531            8 KEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF   62 (266)
Q Consensus         8 ~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~   62 (266)
                      ++|+||+.+|..|+.|++..|.|+|.++||..|.   +.|||+++++|+|+|+++
T Consensus       158 ~vi~g~~e~l~~m~~G~k~~~~iP~~laYG~~g~---~~Ippns~Lvfevel~~i  209 (210)
T d1q6ha_         158 GVIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGV---PGIPPNSTLVFDVELLDV  209 (210)
T ss_dssp             GSCHHHHHHGGGSCTTCEEEEEECGGGTTTTTCB---TTBCTTCCEEEEEEEEEE
T ss_pred             ccchhHHHHHhhccCCCEEEEEECHHHCcCCCCC---CCCCcCCcEEEEEEEEEE
Confidence            5899999999999999999999999999999997   459999999999999976

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.70  E-value=8.8e-08  Score=78.42  Aligned_cols=143  Identities=10%  Similarity=0.018  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHH
Q 024531           79 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCS  158 (266)
Q Consensus        79 ~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~  158 (266)
                      ....++...-+|..++..|++++|+..|++++...|.....            ....++.++|.++..+|++++|+..+.
T Consensus         8 ~~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~------------~~~~a~~~lg~~~~~~g~~~~A~~~~~   75 (366)
T d1hz4a_           8 DTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFY------------SRIVATSVLGEVLHCKGELTRSLALMQ   75 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHH------------HHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcH------------HHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            33445666678999999999999999999999999875321            133478899999999999999999999


Q ss_pred             hHhcCCCC------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--------CHHHHHHHHHHHHHHHHHHHHHHH
Q 024531          159 LVLGEDEN------NVKALFRRGKARAELGQTDAAREDFLKAGKFAPE--------DKSIARELRLLAEHEKAVYKKQKE  224 (266)
Q Consensus       159 ~al~l~p~------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~--------~~~~~~~l~~l~~~~~~~~~~~~~  224 (266)
                      +++.+.|.      ...+++.++.++...|++..|...+.+++.+.+.        ...+...++.+....+....... 
T Consensus        76 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~-  154 (366)
T d1hz4a_          76 QTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEA-  154 (366)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHH-
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHH-
Confidence            99987543      2467889999999999999999999999986432        12344455555554444443333 


Q ss_pred             HHhcccCCCC
Q 024531          225 IYKGIFGPRP  234 (266)
Q Consensus       225 ~~~k~~~~~~  234 (266)
                      .+.+.....+
T Consensus       155 ~~~~~~~~~~  164 (366)
T d1hz4a_         155 SARSGIEVLS  164 (366)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHhh
Confidence            3445444333

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.68  E-value=9.7e-09  Score=76.33  Aligned_cols=93  Identities=18%  Similarity=0.045  Sum_probs=73.8

Q ss_pred             hHHHHHHHhhCHHHHHHHHHhHhcCCCCc------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------
Q 024531          139 NMAACLLKLKRYEEAIGQCSLVLGEDENN------------VKALFRRGKARAELGQTDAAREDFLKAGKFAPE------  200 (266)
Q Consensus       139 n~a~~~~~~~~~~~A~~~~~~al~l~p~~------------~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~------  200 (266)
                      ..|..++..|+|++|+..|+++|.++|+.            ..+|.++|.+|..+|+|++|+.++++++.+.|.      
T Consensus        14 ~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~   93 (156)
T d2hr2a1          14 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ   93 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccc
Confidence            44888999999999999999999988764            357889999999999999999999999987552      


Q ss_pred             -----CHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 024531          201 -----DKSIARELRLLAEHEKAVYKKQKEIYKGIFGP  232 (266)
Q Consensus       201 -----~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~  232 (266)
                           ...++..++.+...+++.+++... |.+.+..
T Consensus        94 ~~~~~~~~a~~~~g~~~~~lg~~eeA~~~-~~~Al~l  129 (156)
T d2hr2a1          94 DEGKLWISAVYSRALALDGLGRGAEAMPE-FKKVVEM  129 (156)
T ss_dssp             THHHHHHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHH
T ss_pred             cccchhHHHHhhhHHHHHHHHHHHHHHHH-HHHHHHh
Confidence                 123556677777777776655544 6666554

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.63  E-value=1.5e-07  Score=71.54  Aligned_cols=100  Identities=17%  Similarity=0.135  Sum_probs=84.2

Q ss_pred             hhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCc----------------------hHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024531          136 CHLNMAACLLKLKRYEEAIGQCSLVLGEDENN----------------------VKALFRRGKARAELGQTDAAREDFLK  193 (266)
Q Consensus       136 ~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~----------------------~~a~~~~g~~~~~~g~~~~A~~~~~~  193 (266)
                      .+.+.|......|++++|+..|.+|+.+.+..                      ..++.+++.++..+|++++|+.++++
T Consensus        13 ~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~   92 (179)
T d2ff4a2          13 AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEA   92 (179)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence            57889999999999999999999999997743                      35789999999999999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------cCCCCCC
Q 024531          194 AGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGI-------FGPRPEP  236 (266)
Q Consensus       194 al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~-------~~~~~~~  236 (266)
                      ++.++|.+..++..+..+....++..++.+. |..+       ++..+.+
T Consensus        93 al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~-y~~~~~~L~~eLG~~P~~  141 (179)
T d2ff4a2          93 LTFEHPYREPLWTQLITAYYLSDRQSDALGA-YRRVKTTLADDLGIDPGP  141 (179)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHTTTCHHHHHHH-HHHHHHHHHHHHSCCCCH
T ss_pred             HHHhCCccHHHHHHHHHHHHHhcCHHHHHHH-HHHHHHHHHHHhCCCcCH
Confidence            9999999999999999987777666655443 3333       6666553

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.61  E-value=8.6e-08  Score=78.50  Aligned_cols=105  Identities=14%  Similarity=-0.013  Sum_probs=89.2

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHh-
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVL-  161 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al-  161 (266)
                      ...+...|..+...|+++.|...+.+++...+.....             ....+.++|.++...|++++|+..+++++ 
T Consensus       213 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~  279 (366)
T d1hz4a_         213 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF-------------LQGQWRNIARAQILLGEFEPAEIVLEELNE  279 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGG-------------GHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchH-------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4456677888999999999999999999887764332             23357789999999999999999999997 


Q ss_pred             -----cCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 024531          162 -----GEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPE  200 (266)
Q Consensus       162 -----~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~  200 (266)
                           ...|....+++.+|.+|..+|++++|+..|++++.+.+.
T Consensus       280 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~  323 (366)
T d1hz4a_         280 NARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR  323 (366)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhh
Confidence                 456677889999999999999999999999999998653

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.58  E-value=1.8e-06  Score=70.73  Aligned_cols=133  Identities=8%  Similarity=-0.060  Sum_probs=107.5

Q ss_pred             HHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCC
Q 024531           87 KMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDEN  166 (266)
Q Consensus        87 ~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~  166 (266)
                      ...+......|+++.|...|.+++...|.+...                ++...+....+.|+++.|...+.+++...|.
T Consensus       103 ~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~----------------~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~  166 (308)
T d2onda1         103 FAYADYEESRMKYEKVHSIYNRLLAIEDIDPTL----------------VYIQYMKFARRAEGIKSGRMIFKKAREDART  166 (308)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHH----------------HHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHhcCChHH----------------HHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence            344566667889999999999999988875431                4677888888999999999999999999999


Q ss_pred             chHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 024531          167 NVKALFRRGKARA-ELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGPRPEP  236 (266)
Q Consensus       167 ~~~a~~~~g~~~~-~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~~~~~  236 (266)
                      +...+...|.... ..|+.+.|...|++++...|+++.+...+......++.. ...+..|.+.+...+..
T Consensus       167 ~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~-~~aR~~fe~ai~~~~~~  236 (308)
T d2onda1         167 RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNED-NNTRVLFERVLTSGSLP  236 (308)
T ss_dssp             CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHSSSSC
T ss_pred             cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHhCCCC
Confidence            9999988887654 468999999999999999999999988888776665554 45677788877655433

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.56  E-value=1.7e-07  Score=75.72  Aligned_cols=75  Identities=16%  Similarity=0.089  Sum_probs=68.1

Q ss_pred             HHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 024531          142 ACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEK  216 (266)
Q Consensus       142 ~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~  216 (266)
                      .-.+..|++++|+..++++++.+|++..++..+|.++...|++++|+..|+++++++|++..+...+..+....+
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~   78 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQ   78 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            456678999999999999999999999999999999999999999999999999999999999888887654333

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.43  E-value=9.1e-08  Score=68.31  Aligned_cols=60  Identities=25%  Similarity=0.432  Sum_probs=51.2

Q ss_pred             ccCCCCccchhHHHHh------hcCCCCcEEEEEEecCcccCCCCCC---CCCCCCCCCceEEEEEEeec
Q 024531            2 VLGKEKKEMTGLAIGV------SSMKAGEHALLHVGWELGYGKEGSF---SFPNVSPMADLVYEVVLIGF   62 (266)
Q Consensus         2 ~lg~~~~~~~gl~~~l------~~m~~gE~~~~~i~~~~~~~~~g~~---~~~~ip~~~~~~~~i~l~~~   62 (266)
                      ++|.+ .+++|++.++      ..|+.||++.|.|.|.++||..|..   ..+.|||++.+.|+|+|+.+
T Consensus        56 ~~g~~-~~i~g~~~~i~g~~~l~~M~~G~k~~v~iP~~laYG~~G~~~~~~~~~IPp~s~LifeieLl~~  124 (125)
T d1u79a_          56 RIGVG-EVIKGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  124 (125)
T ss_dssp             ETTSS-SSCHHHHHHHHCBTTBCCCBTTCEEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             ecCcc-ccccchhhhccchhhcccccCCCEEEEEECHHHCCCCCCcCCcCCCCcCCcCCeEEEEEEEEEe
Confidence            47777 7999999877      5699999999999999999998852   24569999999999999864

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.27  E-value=3e-06  Score=59.44  Aligned_cols=77  Identities=13%  Similarity=0.035  Sum_probs=61.0

Q ss_pred             HHHHhHHHHh---hccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhc
Q 024531           86 RKMDGNALFK---EEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLG  162 (266)
Q Consensus        86 ~~~~g~~~~~---~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~  162 (266)
                      .++-|-.+.+   ..+.++|+..+..++...|....                .+++++|.+|.++|+|++|..+++++|+
T Consensus        38 ~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~r----------------d~lY~Lav~yyklgdy~~A~~~~~~~L~  101 (124)
T d2pqrb1          38 RFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRR----------------ECLYYLTIGCYKLGEYSMAKRYVDTLFE  101 (124)
T ss_dssp             HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHH----------------HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHH----------------HHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence            3444444543   35678999999999988776432                2789999999999999999999999999


Q ss_pred             CCCCchHHHHHHHHHH
Q 024531          163 EDENNVKALFRRGKAR  178 (266)
Q Consensus       163 l~p~~~~a~~~~g~~~  178 (266)
                      ++|+|..|...+..+.
T Consensus       102 ieP~n~qA~~L~~~Ie  117 (124)
T d2pqrb1         102 HERNNKQVGALKSMVE  117 (124)
T ss_dssp             HCTTCHHHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHHHH
Confidence            9999998876655544

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.23  E-value=2.8e-06  Score=69.52  Aligned_cols=121  Identities=15%  Similarity=0.055  Sum_probs=95.4

Q ss_pred             hhccHHHHHHHHHHHHhh-hccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCch-HHHH
Q 024531           95 KEEKLEEAMQQYEMAIAY-MGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNV-KALF  172 (266)
Q Consensus        95 ~~g~~~~A~~~y~~al~~-~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~-~a~~  172 (266)
                      ..+.++.|...|.+|+.. .|.+..                 ++...+......|+++.|...+++++...|.+. .++.
T Consensus        76 ~~~~~~~a~~i~~ral~~~~p~~~~-----------------l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~  138 (308)
T d2onda1          76 AKLFSDEAANIYERAISTLLKKNML-----------------LYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYI  138 (308)
T ss_dssp             HHHHHHHHHHHHHHHHTTTTTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHH
T ss_pred             cccchHHHHHHHHHHHHHcCCCCHH-----------------HHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHH
Confidence            344578899999999975 455333                 577889999999999999999999999999775 4788


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 024531          173 RRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAEHEKAVYKKQKEIYKGIFGP  232 (266)
Q Consensus       173 ~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~k~~~~  232 (266)
                      ..+......|+++.|.+.|.+++...|.+.......+.+........+.....|..++..
T Consensus       139 ~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~  198 (308)
T d2onda1         139 QYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK  198 (308)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999998887766655433222334455667777654

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.87  E-value=0.00013  Score=57.42  Aligned_cols=97  Identities=15%  Similarity=0.089  Sum_probs=79.8

Q ss_pred             HHHHHHHhHHHHhhccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHH----hhCHHHHHHHHH
Q 024531           83 ADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLK----LKRYEEAIGQCS  158 (266)
Q Consensus        83 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~----~~~~~~A~~~~~  158 (266)
                      ++.+..+|..++..++|.+|+..|+++.+..  +..                 +++++|.+|..    ..++..|..++.
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g--~~~-----------------A~~~Lg~~y~~G~~~~~d~~~a~~~~~   62 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK--ENS-----------------GCFNLGVLYYQGQGVEKNLKKAASFYA   62 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CHH-----------------HHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC--CHH-----------------HHHHHHHHHHcCCCcchhHHHHHHhhc
Confidence            4578899999999999999999999998764  222                 68889999987    568999999999


Q ss_pred             hHhcCCCCchHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCC
Q 024531          159 LVLGEDENNVKALFRRGKARAE----LGQTDAAREDFLKAGKFAPE  200 (266)
Q Consensus       159 ~al~l~p~~~~a~~~~g~~~~~----~g~~~~A~~~~~~al~l~p~  200 (266)
                      .+...  .++.+.+.+|.++..    ..+.+.|...++.+....+.
T Consensus        63 ~a~~~--~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~  106 (265)
T d1ouva_          63 KACDL--NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA  106 (265)
T ss_dssp             HHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             ccccc--cccchhhccccccccccccchhhHHHHHHHhhhhhhhhh
Confidence            88765  477888888888875    57889999999998876553

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.57  E-value=0.00038  Score=49.12  Aligned_cols=59  Identities=17%  Similarity=0.101  Sum_probs=29.5

Q ss_pred             hhhHHHHHHH----hhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHH----cCCHHHHHHHHHHHHhh
Q 024531          137 HLNMAACLLK----LKRYEEAIGQCSLVLGEDENNVKALFRRGKARAE----LGQTDAAREDFLKAGKF  197 (266)
Q Consensus       137 ~~n~a~~~~~----~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~----~g~~~~A~~~~~~al~l  197 (266)
                      ++++|..|..    ..++.+|+.+++++.+.  .++.+.+++|.+|..    ..++.+|+.+|+++.++
T Consensus        58 ~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~  124 (133)
T d1klxa_          58 CRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  124 (133)
T ss_dssp             HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             hhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence            4455555543    23455555555555443  345555555555554    34555555555555543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.50  E-value=0.0004  Score=54.54  Aligned_cols=72  Identities=22%  Similarity=0.251  Sum_probs=57.6

Q ss_pred             hhhhhHHHHHHH----hhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHH
Q 024531          135 PCHLNMAACLLK----LKRYEEAIGQCSLVLGEDENNVKALFRRGKARAE----LGQTDAAREDFLKAGKFAPEDKSIAR  206 (266)
Q Consensus       135 ~~~~n~a~~~~~----~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~  206 (266)
                      .+.+++|.+|..    .+++..|+.+|.++.+.  .++.+.+++|.+|..    ..++++|+.+|++|....+  ..+..
T Consensus       179 ~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~--~~A~~  254 (265)
T d1ouva_         179 PGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA--KGACD  254 (265)
T ss_dssp             HHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC--HHHHH
T ss_pred             ccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC--HHHHH
Confidence            368889988887    56899999999999887  478899999999986    4589999999999987765  44454


Q ss_pred             HHHH
Q 024531          207 ELRL  210 (266)
Q Consensus       207 ~l~~  210 (266)
                      .|..
T Consensus       255 ~l~~  258 (265)
T d1ouva_         255 ILKQ  258 (265)
T ss_dssp             HHHT
T ss_pred             HHHH
Confidence            4543

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.43  E-value=0.0007  Score=47.65  Aligned_cols=92  Identities=15%  Similarity=-0.008  Sum_probs=72.9

Q ss_pred             ccHHHHHHHHHHHHhhhccchhhhhchhHHHHHHHhhhhhhhhHHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHH
Q 024531           97 EKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGK  176 (266)
Q Consensus        97 g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~n~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~  176 (266)
                      .|+++|+..|.++.+.....                   +..+++.  ....++++|+..++++.+.  .++.+.+.+|.
T Consensus         7 kd~~~A~~~~~kaa~~g~~~-------------------a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~   63 (133)
T d1klxa_           7 KDLKKAIQYYVKACELNEMF-------------------GCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGD   63 (133)
T ss_dssp             HHHHHHHHHHHHHHHTTCTT-------------------HHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHCCChh-------------------hhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHH
Confidence            58899999999998864321                   3455553  3456899999999999875  68999999999


Q ss_pred             HHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024531          177 ARAE----LGQTDAAREDFLKAGKFAPEDKSIARELRLLAE  213 (266)
Q Consensus       177 ~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  213 (266)
                      .|..    ..++.+|+.+|+++.+.  .++.+...|..+..
T Consensus        64 ~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~  102 (133)
T d1klxa_          64 FYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQY  102 (133)
T ss_dssp             HHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             hhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHH
Confidence            9987    67899999999999875  56777777877653

>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Mycoplasma genitalium [TaxId: 2097]

Probab=97.22  E-value=0.00015  Score=47.20  Aligned_cols=53  Identities=21%  Similarity=0.376  Sum_probs=44.9

Q ss_pred             ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeec
Q 024531            2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGF   62 (266)
Q Consensus         2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~   62 (266)
                      +||.+ .+++||+.+|..|+.|+...|.+.+...|+..+       .++..+.|.+.+..+
T Consensus        32 ~lg~~-~~ipgf~~~l~g~~~Ge~~~~~i~~p~~y~~~~-------laGk~~~f~V~v~~V   84 (85)
T d1hxva_          32 TIGSN-SFIKGFETGLIAMKVNQKKTLALTFPSDYHVKE-------LQSKPVTFEVVLKAI   84 (85)
T ss_dssp             EETSS-CSCTTHHHHHHTSCSSEEEEECCCCCTTSSSSG-------GGSCCCEEEEEECCB
T ss_pred             EECCc-ccCchHHHHhccCcCCCeEEEEEEChhhcCccc-------CCCCcEEEEEEEEEe
Confidence            58888 799999999999999999999999888777644       256788999998765

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

Probab=97.09  E-value=0.00014  Score=52.85  Aligned_cols=39  Identities=23%  Similarity=0.460  Sum_probs=36.0

Q ss_pred             ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCCC
Q 024531            2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGS   41 (266)
Q Consensus         2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~   41 (266)
                      ++|.+ ++++|||.+|..|+.|++..|.++|..+||....
T Consensus        48 ~~G~g-~~ipglE~al~gm~~Ge~~~v~i~p~~ayG~~d~   86 (151)
T d1ix5a_          48 VVGEG-QLIQGFEEAVLDMEVGDEKTVKIPAEKAYGNRNE   86 (151)
T ss_dssp             ETTTT-CSCHHHHHHHHTCCTTCCCEEEECTTTSSCSCCS
T ss_pred             EecCC-CccHHHHHHHHhhcCCceeEEEeCHHHhcccccc
Confidence            57988 7999999999999999999999999999997654

>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Escherichia coli [TaxId: 562]

Probab=93.07  E-value=0.12  Score=34.35  Aligned_cols=56  Identities=20%  Similarity=0.319  Sum_probs=42.4

Q ss_pred             ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeecccc
Q 024531            2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDET   65 (266)
Q Consensus         2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~~~~   65 (266)
                      .||.+ ..++||+.+|..|+.|+...|.+.---.|.       ..--.+..+.|.+.+..+...
T Consensus        45 ~lg~~-~~~~gf~~~L~G~k~Ge~~~~~~~~P~d~~-------~~~laGK~v~f~V~v~~i~~~  100 (106)
T d1l1pa_          45 AMGQG-RMIPGFEDGIKGHKAGEEFTIDVTFPEEYH-------AENLKGKAAKFAINLKKVEER  100 (106)
T ss_dssp             EETTS-CCCTTHHHHTTSCCTTCCEEEEECCCSSCC-------CTTTTTCCEEEEEEEEEEECC
T ss_pred             EecCC-CccchHHHHhcCCCCCceEEEEEEeCCCCC-------chhhCCCEEEEEEEEEEeccc
Confidence            58888 689999999999999999999996322221       122345688999999887654

>d1t11a3 d.26.1.1 (A:135-247) Trigger factor PPIase domain {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Vibrio cholerae [TaxId: 666]

Probab=89.97  E-value=0.068  Score=35.99  Aligned_cols=55  Identities=13%  Similarity=0.226  Sum_probs=39.7

Q ss_pred             ccCCCCccchhHHHHhhcCCCCcEEEEEEecCcccCCCCCCCCCCCCCCCceEEEEEEeeccc
Q 024531            2 VLGKEKKEMTGLAIGVSSMKAGEHALLHVGWELGYGKEGSFSFPNVSPMADLVYEVVLIGFDE   64 (266)
Q Consensus         2 ~lg~~~~~~~gl~~~l~~m~~gE~~~~~i~~~~~~~~~g~~~~~~ip~~~~~~~~i~l~~~~~   64 (266)
                      ++|.+ ..++||+.+|..|++|+...|.++-...|...       --.+..+.|.+.+..+..
T Consensus        54 ~lg~~-~~~~~f~~~L~G~k~Ge~~~~~~~~Ped~~~~-------~laGk~~~f~v~v~~Ik~  108 (113)
T d1t11a3          54 EMGAG-RMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAE-------NLKGKAAKFAIKVNKVEA  108 (113)
T ss_dssp             ETTSC-CBSTTSGGGTTTCCSSCCCCEEEECCTTCSCT-------TTSSCEEEECCCEEEEEE
T ss_pred             Eeccc-cccccHHHhhcCCcCCCEEEEEEeCCCcCCcc-------ccCCCeEEEEEEEEEEEe
Confidence            58887 78999999999999999999998632222211       113457788887776654

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.82  E-value=0.95  Score=28.85  Aligned_cols=36  Identities=19%  Similarity=0.102  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhc
Q 024531           79 RIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMG  114 (266)
Q Consensus        79 ~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~  114 (266)
                      ....+-.+...|..+-..|+|.+|+..|..|++..-
T Consensus        11 ~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~   46 (93)
T d1wfda_          11 DSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLL   46 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            355677788999999999999999999999998753

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=86.13  E-value=1.9  Score=35.56  Aligned_cols=57  Identities=11%  Similarity=-0.045  Sum_probs=45.2

Q ss_pred             HHHHHHHhhCHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024531          140 MAACLLKLKRYEEAIGQCSLVLGEDENNVKALFRRGKARAELGQTDAAREDFLKAGK  196 (266)
Q Consensus       140 ~a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~  196 (266)
                      ++...+..+++..+...++..-.-......+.|.+|.++..+|+.++|...|..+..
T Consensus       291 ~~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~  347 (450)
T d1qsaa1         291 RVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (450)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence            333456678999998888765443334578899999999999999999999998765

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.25  E-value=1  Score=27.75  Aligned_cols=36  Identities=22%  Similarity=0.361  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhhcc
Q 024531           80 IGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGD  115 (266)
Q Consensus        80 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~  115 (266)
                      +..+-.+-.++..+.+.|.|++||+.+.+|......
T Consensus         5 LN~AH~~~RrAer~l~~~rydeAIech~kA~~yl~e   40 (83)
T d2crba1           5 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSE   40 (83)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            456777778899999999999999999999887643

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=83.85  E-value=1.9  Score=34.36  Aligned_cols=41  Identities=12%  Similarity=-0.018  Sum_probs=26.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024531          173 RRGKARAELGQTDAAREDFLKAGKFAPEDKSIARELRLLAE  213 (266)
Q Consensus       173 ~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  213 (266)
                      ..-..|...|.+++.+..++.++..++.+..+...+..+..
T Consensus       104 ~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lya  144 (336)
T d1b89a_         104 ELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYS  144 (336)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHH
Confidence            34555666677777777777776666666666666665543

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.18  E-value=3.8  Score=25.79  Aligned_cols=19  Identities=5%  Similarity=-0.143  Sum_probs=10.1

Q ss_pred             HHHcCCHHHHHHHHHHHHh
Q 024531          178 RAELGQTDAAREDFLKAGK  196 (266)
Q Consensus       178 ~~~~g~~~~A~~~~~~al~  196 (266)
                      +-..|+|++|+..|..+++
T Consensus        25 ~D~~g~y~eA~~~Y~~aie   43 (93)
T d1wfda_          25 LDAESRYQQALVCYQEGID   43 (93)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHH
Confidence            3355555555555555544

>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.12  E-value=0.96  Score=27.67  Aligned_cols=36  Identities=25%  Similarity=0.264  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHhHHHHhhccHHHHHHHHHHHHhhh
Q 024531           78 ERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYM  113 (266)
Q Consensus        78 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~  113 (266)
                      ..+..+..+...|...-..|+|..|+..|..|++..
T Consensus         6 ~~l~~A~~l~~~Av~~D~~~~y~~A~~~Y~~a~~~l   41 (77)
T d1wr0a1           6 PNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYF   41 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            345677888889999999999999999999999864

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.08  E-value=1.2  Score=27.44  Aligned_cols=39  Identities=23%  Similarity=0.175  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH-------hhCCCCHHHHHHHH
Q 024531          170 ALFRRGKARAELGQTDAAREDFLKAG-------KFAPEDKSIARELR  209 (266)
Q Consensus       170 a~~~~g~~~~~~g~~~~A~~~~~~al-------~l~p~~~~~~~~l~  209 (266)
                      .+-++|..+...|.|++|+++.+++.       ++ |.++.++.-|.
T Consensus        10 ~~~RrAer~l~~~rydeAIech~kA~~yl~eA~kl-t~s~~~l~SLq   55 (83)
T d2crba1          10 QQSRRADRLLAAGKYEEAISCHRKATTYLSEAMKL-TESEQAHLSLE   55 (83)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT-CCCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence            34466777777777777777666554       44 56666655443