Citrus Sinensis ID: 024533

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260------
Protein Sequence
MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLNLWIPPYVRVDLFQINLDQYSRPSRSDKYVKWALRVGSVHRPKAPSPFVQSVEVSFSDRPDLKTAILNKQPFKLKRRKQITSAMIRTPLFGS
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHcccccEEEEccccHHHHHcccccccEEEEccccccccccccccccccHHHHHHHccccccccccccccccEEcccEEEccccccHHHHHHHHHHHHHccEEEEEcccccccccccccHHHHHccccEEEEccccccccccccEEEEccHHHHHHHHHHHHccccccccccccEEEEcccccccccccccEEEEEEEEccccccccccccEEEEcccccccccccccccccccccEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHcccEEEEEEcccccHHHHccccHHHEEEEccccEEEEHHHcccEEccHHHHHHccccccccccccHccccEEcccEEEccccccHHHHHHHHHHHHcccEEEEEEccEEEEcccccHHHHHHcccEEEEEEcccccccccccEEEcccHHHHHHHHHHHHcccccccccccccEEEcccccccccccccccEEEEcccccccccccccEEEEEccccccccccHHHHccccccEEEEcccccccEccccccc
Coil and Loop (DISEMBL)
MPSITHMALVELEKAGILKFVISqnvdslhlrsgipreklaelhgnsfreicpscgveyMRDFEIetigmkktprrcsdvkcgsrlkdtvldwedalppvemnpaeencrMADVVLCLgtslqitpacnlplkslrgggKIVIVNLqqtpkdkkaslvVHAPVDKVIAGVMRHLnlwippyvrvdlfqinldqysrpsrsdkYVKWALRVgsvhrpkapspfvqsvevsfsdrpdlKTAILNKQPFKLKRRKQITSAMIRTPLFGS
Flexible Loop (DISEMBL)
MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEietigmkktprrcsdvkcgsrlkdtvldwedalppVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLqqtpkdkkaslvVHAPVDKVIAGVMRHLNLWIPPYVRVDLFQINLDqysrpsrsdkyVKWALRVGsvhrpkapspfvqsvevsfsdrpdlktailnkqpfklkrrkqitsamirtplfgs
Low Complexity Region (SEG)
MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLNLWIPPYVRVDLFQINLDQYSRPSRSDKYVKWALRVGSVHRPKAPSPFVQSVEVSFSDRPDLKTAILNKQPFKLKRRKQITSAMIRTPLFGS
Disordered region (IsUnstruct)
*****HMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLNLWIPPYVRVDLFQINLDQYSRPSRSDKYVKWALRVGSV*****************************************************
Disordered Region (DISOPRED)
MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLNLWIPPYVRVDLFQIN*****************************************************************SAMIRTPLFG*
Disordered Region (DISEMBL)
MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLNLWIPPYVRVDLFQINLDQYSRPSRSDKYVKWALRVGSVHRPKAPSPFVQSVEVSFSDRPDLKTAILNKQPFKLKRRKQITSAMIRTPLFGS
Disordered Region (DISPRO)
MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLNLWIPPYVRVDLFQINLDQYSRPSRSDKYVKWALRVGSVHRPKAPSPFVQSVEVSFSDRPDLKTAILNKQPFKLKRRKQITSAMIRTPLFGS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLNLWIPPYVRVDLFQINLDQYSRPSRSDKYVKWALRVGSVHRPKAPSPFVQSVEVSFSDRPDLKTAILNKQPFKLKRRKQITSAMIRTPLFGS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	266	2.2.26 [Sep-21-2011]
Q9FE17	473	NAD-dependent protein dea	yes	no	0.936	0.526	0.709	1e-105
B8ARK7	484	NAD-dependent protein dea	N/A	no	0.958	0.526	0.687	1e-102
P59941	334	NAD-dependent protein dea	no	no	0.872	0.694	0.444	4e-51
Q8N6T7	355	NAD-dependent protein dea	yes	no	0.676	0.507	0.521	2e-50
Q9VH08	317	NAD-dependent protein dea	yes	no	0.766	0.643	0.392	3e-38
Q9NRC8	400	NAD-dependent protein dea	no	no	0.669	0.445	0.389	5e-29
B2RZ55	402	NAD-dependent protein dea	no	no	0.669	0.442	0.4	7e-29
Q0P595	400	NAD-dependent protein dea	no	no	0.669	0.445	0.384	1e-28
Q8BKJ9	402	NAD-dependent protein dea	no	no	0.669	0.442	0.394	2e-28
Q9VAQ1	771	NAD-dependent protein dea	no	no	0.676	0.233	0.378	7e-28

>sp|Q9FE17|SIR1_ARATH NAD-dependent protein deacetylase SRT1 OS=Arabidopsis thaliana GN=SRT1 PE=2 SV=1

 Score =  382 bits (980), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 178/251 (70%), Positives = 215/251 (85%), Gaps = 2/251 (0%)

Query: 1   MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYM 60
           MPS+THMALVELE+AGILKFVISQNVD LHLRSGIPREKL+ELHG+SF E+CPSCG EY+
Sbjct: 91  MPSMTHMALVELERAGILKFVISQNVDGLHLRSGIPREKLSELHGDSFMEMCPSCGAEYL 150

Query: 61  RDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGT 120
           RDFE+ETIG+K+T R+CS  KCG++LKDTVLDWEDALPP E++PAE++C+ AD+VLCLGT
Sbjct: 151 RDFEVETIGLKETSRKCSVEKCGAKLKDTVLDWEDALPPKEIDPAEKHCKKADLVLCLGT 210

Query: 121 SLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLNLWIPP 180
           SLQITPACNLPLK L+GGGKIVIVNLQ+TPKDKKA++V+H  VDKV+AGVM  LN+ IPP
Sbjct: 211 SLQITPACNLPLKCLKGGGKIVIVNLQKTPKDKKANVVIHGLVDKVVAGVMESLNMKIPP 270

Query: 181 YVRVDLFQINLDQYSRPSRSDKYVKWALRVGSVHRPKAPSPFVQSVEVSFSDRPDLKTAI 240
           YVR+DLFQI L Q    S   +++ W LRV SVH   +  PF++S+EVSFSD  + K A+
Sbjct: 271 YVRIDLFQIILTQ--SISGDQRFINWTLRVASVHGLTSQLPFIKSIEVSFSDNHNYKDAV 328

Query: 241 LNKQPFKLKRR 251
           L+KQPF +KRR
Sbjct: 329 LDKQPFLMKRR 339

NAD-dependent protein deacetylase. Has deacetylase activity towards H3K9Ac. May have a function in the safeguard against genome instabiliy and DNA damage to ensure plant cell growth.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: -

>sp|B8ARK7|SIR1_ORYSI NAD-dependent protein deacetylase SRT1 OS=Oryza sativa subsp. indica GN=SRT1 PE=2 SV=1

 Score =  372 bits (956), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/259 (68%), Positives = 210/259 (81%), Gaps = 4/259 (1%)

Query: 1   MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYM 60
           +P++THMALVELEK G LKFVISQNVDSLHLRSG+PREKLAELHGNSF+EICPSC  EY+
Sbjct: 92  VPTLTHMALVELEKTGRLKFVISQNVDSLHLRSGLPREKLAELHGNSFKEICPSCKKEYL 151

Query: 61  RDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGT 120
           RDFEIETIG+K TPRRCSD  CG+RLKDTVLDWEDALPP EM+ A+E C+ AD+VLCLGT
Sbjct: 152 RDFEIETIGLKDTPRRCSDKNCGARLKDTVLDWEDALPPEEMDAAKEQCQTADLVLCLGT 211

Query: 121 SLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLNLWIPP 180
           SLQITPACN+PL SL+ GG++ IVNLQ TPKDKKASLV+H  VDKVIAGVM  +NL IPP
Sbjct: 212 SLQITPACNMPLLSLKNGGRVAIVNLQATPKDKKASLVIHGLVDKVIAGVMYMMNLRIPP 271

Query: 181 YVRVDLFQINLDQYSRPSRSDKYVKWALRVGSVHRPKAPSPFVQSVEVSFSDRPDLKTAI 240
           Y+R D  QI+L    R S   K V+W LRV S+H  +AP PF++SVEVSF +RPD+K  +
Sbjct: 272 YIRTDFVQISL----RNSVKKKCVRWTLRVTSIHGLRAPLPFLRSVEVSFPERPDMKPVV 327

Query: 241 LNKQPFKLKRRKQITSAMI 259
           L +QPF L+R   +    +
Sbjct: 328 LKEQPFSLQRETSMNRPFV 346

NAD-dependent protein deacetylase. Has deacetylase activity towards H3K9Ac. May have a function in the safeguard against genome instabiliy and DNA damage to ensure plant cell growth.

Oryza sativa subsp. indica (taxid: 39946)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

>sp|P59941|SIR6_MOUSE NAD-dependent protein deacetylase sirtuin-6 OS=Mus musculus GN=Sirt6 PE=1 SV=1

 Score =  201 bits (512), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 113/254 (44%), Positives = 157/254 (61%), Gaps = 22/254 (8%)

Query: 2   PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
           PS THMALV+LE+ G L F++SQNVD LH+RSG PR+KLAELHGN F E CP C  +Y+R
Sbjct: 91  PSKTHMALVQLERMGFLSFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECPKCKTQYVR 150

Query: 62  DFEIETIGMKKTPRRCSDVK------CGSRLKDTVLDWEDALPPVEMNPAEENCRMADVV 115
           D  + T+G+K T R C+  K      C   L+DT+LDWED+LP  ++  A+E  R AD+ 
Sbjct: 151 DTVVGTMGLKATGRLCTVAKTRGLRACRGELRDTILDWEDSLPDRDLMLADEASRTADLS 210

Query: 116 LCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLN 175
           + LGTSLQI P+ NLPL + R GG++VIVNLQ T  D++A L +H  VD+V+  +M+HL 
Sbjct: 211 VTLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRQADLRIHGYVDEVMCRLMKHLG 270

Query: 176 LWIPPYVRVDLFQINLDQYSRPSRSDKYVKWALRVGSVHRPKAPSPFVQSVEVSFSDRPD 235
           L IP +    +    L    RP         AL+       + P     +V VS+  +P+
Sbjct: 271 LEIPAWDGPCVLDKALPPLPRPV--------ALKA------EPPVHLNGAVHVSYKSKPN 316

Query: 236 LKTAILNKQPFKLK 249
             + IL++ P ++K
Sbjct: 317 --SPILHRPPKRVK 328

NAD-dependent protein deacetylase. Has deacetylase activity towards histone H3K9Ac and H3K56Ac. Modulates acetylation of histone H3 in telomeric chromatin during the S-phase of the cell cycle. Deacetylates histone H3K9Ac at NF-kappa-B target promoters and may down-regulate the expression of a subset of NF-kappa-B target genes. Deacetylation of nucleosomes interferes with RELA binding to target DNA. May be required for the association of WRN with telomeres during S-phase and for normal telomere maintenance. On DNA damage, promotes DNA end resection via deacetylation of RBBP8. Has very weak deacetylase activity and can bind NAD(+) in the absence of acetylated substrate (By similarity). Acts as a corepressor of the transcription factor Hif1a to control the expression of multiple glycolytic genes to regulate glucose homeostasis. Required for genomic stability. Required for normal IGF1 serum levels and normal glucose homeostasis. Modulates cellular senescence and apoptosis. Regulates the production of TNF protein. Has a role in the regulation of life span in male mice, but not in female mice.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

>sp|Q8N6T7|SIR6_HUMAN NAD-dependent protein deacetylase sirtuin-6 OS=Homo sapiens GN=SIRT6 PE=1 SV=2

 Score =  199 bits (505), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 97/186 (52%), Positives = 131/186 (70%), Gaps = 6/186 (3%)

Query: 2   PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
           P+ THMALV+LE+ G+L+F++SQNVD LH+RSG PR+KLAELHGN F E C  C  +Y+R
Sbjct: 91  PTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVR 150

Query: 62  DFEIETIGMKKTPRRCSDVK------CGSRLKDTVLDWEDALPPVEMNPAEENCRMADVV 115
           D  + T+G+K T R C+  K      C   L+DT+LDWED+LP  ++  A+E  R AD+ 
Sbjct: 151 DTVVGTMGLKATGRLCTVAKARGLRACRGELRDTILDWEDSLPDRDLALADEASRNADLS 210

Query: 116 LCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLN 175
           + LGTSLQI P+ NLPL + R GG++VIVNLQ T  D+ A L +H  VD+V+  +M+HL 
Sbjct: 211 ITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEVMTRLMKHLG 270

Query: 176 LWIPPY 181
           L IP +
Sbjct: 271 LEIPAW 276

NAD-dependent protein deacetylase. Has deacetylase activity towards histone H3K9Ac and H3K56Ac. Modulates acetylation of histone H3 in telomeric chromatin during the S-phase of the cell cycle. Deacetylates histone H3K9Ac at NF-kappa-B target promoters and may down-regulate the expression of a subset of NF-kappa-B target genes. Acts as a corepressor of the transcription factor HIF1A to control the expression of multiple glycolytic genes to regulate glucose homeostasis. Required for genomic stability. Regulates the production of TNF protein. Has a role in the regulation of life span (By similarity). Deacetylation of nucleosomes interferes with RELA binding to target DNA. May be required for the association of WRN with telomeres during S-phase and for normal telomere maintenance. Required for genomic stability. Required for normal IGF1 serum levels and normal glucose homeostasis. Modulates cellular senescence and apoptosis. On DNA damage, promotes DNA end resection via deacetylation of RBBP8. Has very weak deacetylase activity and can bind NAD(+) in the absence of acetylated substrate.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

>sp|Q9VH08|SIR6_DROME NAD-dependent protein deacetylase Sirt6 OS=Drosophila melanogaster GN=Sirt6 PE=2 SV=1

 Score =  158 bits (400), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 88/224 (39%), Positives = 134/224 (59%), Gaps = 20/224 (8%)

Query: 2   PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
           P+ THMA++ L ++G +++VISQN+D LHL+SG+ R+ L+ELHGN + E C  C  +++ 
Sbjct: 91  PTKTHMAIIALIESGYVQYVISQNIDGLHLKSGLDRKYLSELHGNIYIEQCKKCRRQFVS 150

Query: 62  DFEIETIGMKKTPRRC-SDVKCGSR------LKDTVLDWEDALPPVEMNPAEENCRMADV 114
              +ET+G K   R C S +    R      L D VLDWE  LP  ++     +  +AD+
Sbjct: 151 PSAVETVGQKSLQRACKSSMDSKGRSCRSGILYDNVLDWEHDLPENDLEMGVMHSTVADL 210

Query: 115 VLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHL 174
            + LGT+LQI P+ +LPLK+L+ GGK VI NLQ T  DKKA+L++ + VD V++ V + L
Sbjct: 211 NIALGTTLQIVPSGDLPLKNLKCGGKFVICNLQPTKHDKKANLIISSYVDVVLSKVCKLL 270

Query: 175 NLWIPPYVRVDLFQINLDQYSRPSRSDKYVKWAL---RVGSVHR 215
            + IP Y           + S P++  K ++W +    V + HR
Sbjct: 271 GVEIPEY----------SEASDPTKQSKPMEWTIPTSNVNTFHR 304

NAD-dependent protein deacetylase (By similarity). May be involved in the regulation of life span.

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

>sp|Q9NRC8|SIR7_HUMAN NAD-dependent protein deacetylase sirtuin-7 OS=Homo sapiens GN=SIRT7 PE=1 SV=1

 Score =  128 bits (321), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 76/195 (38%), Positives = 112/195 (57%), Gaps = 17/195 (8%)

Query: 2   PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSC--GVEY 59
           P++THM++  L +  +++ V+SQN D LHLRSG+PR  ++ELHGN + E+C SC    EY
Sbjct: 145 PTLTHMSITRLHEQKLVQHVVSQNCDGLHLRSGLPRTAISELHGNMYIEVCTSCVPNREY 204

Query: 60  MRDFEI---ETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALP---PVEMNPAEENCRMAD 113
           +R F++     +   +T R C   KCG++L+DT++ + +      P+    A E    AD
Sbjct: 205 VRVFDVTERTALHRHQTGRTCH--KCGTQLRDTIVHFGERGTLGQPLNWEAATEAASRAD 262

Query: 114 VVLCLGTSLQITPA-----CNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIA 168
            +LCLG+SL++        C     S R   K+ IVNLQ TPKD  A+L +H   D V+ 
Sbjct: 263 TILCLGSSLKVLKKYPRLWCMTKPPSRR--PKLYIVNLQWTPKDDWAALKLHGKCDDVMR 320

Query: 169 GVMRHLNLWIPPYVR 183
            +M  L L IP Y R
Sbjct: 321 LLMAELGLEIPAYSR 335

NAD-dependent protein deacetylase. Required to restore the transcription of ribosomal RNA (rRNA) at the exit from mitosis. Promotes the association of RNA polymerase I with the rDNA promoter region and coding region. Stimulates transcription activity of the RNA polymerase I complex.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

>sp|B2RZ55|SIR7_RAT NAD-dependent protein deacetylase sirtuin-7 OS=Rattus norvegicus GN=Sirt7 PE=2 SV=1

 Score =  127 bits (319), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 78/195 (40%), Positives = 114/195 (58%), Gaps = 17/195 (8%)

Query: 2   PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSC--GVEY 59
           P++THM++ +L K  +++ V+SQN D LHLRSG+PR  ++ELHGN + E+C SC    EY
Sbjct: 146 PTLTHMSITQLHKHKLVQHVVSQNCDGLHLRSGLPRTAISELHGNMYIEVCTSCIPNREY 205

Query: 60  MRDFEI-ETIGMKK--TPRRCSDVKCGSRLKDTVLDWEDALP---PVEMNPAEENCRMAD 113
           +R F++ E   + +  T R C   KCG++L+DT++ + +      P+    A E    AD
Sbjct: 206 VRVFDVTERTALHRHLTGRTCH--KCGTQLRDTIVHFGERGTLGQPLNWEAATEAASKAD 263

Query: 114 VVLCLGTSLQITPA-----CNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIA 168
            +LCLG+SL++        C     S R   K+ IVNLQ TPKD  A+L +H   D V+ 
Sbjct: 264 TILCLGSSLKVLKKYPRLWCMTKPPSRR--PKLYIVNLQWTPKDDWAALKLHGKCDDVMR 321

Query: 169 GVMRHLNLWIPPYVR 183
            +M  L L IP Y R
Sbjct: 322 LLMDELGLEIPVYNR 336

NAD-dependent protein deacetylase that specifically mediates deacetylation of histone H3 at 'Lys-18' (H3K18Ac). In contrast to other histone deacetylases, displays selectivity for a single histone mark, H3K18Ac, directly linked to control of gene expression. H3K18Ac is mainly present around the transcription start site of genes and has been linked to activation of nuclear hormone receptors. SIRT7 thereby acts as a transcription repressor. Moreover, H3K18 hypoacetylation has been reported as a marker of malignancy in various cancers and seems to maintain the transformed phenotype of cancer cells. These data suggest that SIRT7 may play a key role in oncogenic transformation by suppresses expression of tumor suppressor genes by locus-specific deacetylation of H3K18Ac at promoter regions. Also required to restore the transcription of ribosomal RNA (rRNA) at the exit from mitosis: promotes the association of RNA polymerase I with the rDNA promoter region and coding region. Stimulates transcription activity of the RNA polymerase I complex. May also deacetylate p53/TP53 and promotes cell survival, however such data need additional confirmation.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

>sp|Q0P595|SIR7_BOVIN NAD-dependent protein deacetylase sirtuin-7 OS=Bos taurus GN=SIRT7 PE=2 SV=1

 Score =  126 bits (317), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/195 (38%), Positives = 111/195 (56%), Gaps = 17/195 (8%)

Query: 2   PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSC--GVEY 59
           P++THM++  L +  +++ V+SQN D LHLRSG+PR  ++ELHGN + E+C +C    EY
Sbjct: 145 PTLTHMSITRLHEQKLVQHVVSQNCDGLHLRSGLPRSAMSELHGNMYIEVCTACTPNREY 204

Query: 60  MRDFEI---ETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALP---PVEMNPAEENCRMAD 113
           +R F++     +   +T R C   KCG +L+DT++ + +      P+    A E    AD
Sbjct: 205 VRVFDVTERTALHRHQTGRTCH--KCGGQLRDTIVHFGERGTLGQPLNWEAATEAASKAD 262

Query: 114 VVLCLGTSLQITPA-----CNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIA 168
            +LCLG+SL++        C     S R   K+ IVNLQ TPKD  A+L +H   D V+ 
Sbjct: 263 TILCLGSSLKVLKKYPHLWCMTKPPSRR--PKLYIVNLQWTPKDDWAALKLHGKCDDVMQ 320

Query: 169 GVMRHLNLWIPPYVR 183
            +M  L L IP Y R
Sbjct: 321 LLMDELGLEIPRYSR 335

NAD-dependent protein deacetylase. Required to restore the transcription of ribosomal RNA (rRNA) at the exit from mitosis. Promotes the association of RNA polymerase I with the rDNA promoter region and coding region. Stimulates transcription activity of the RNA polymerase I complex.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

>sp|Q8BKJ9|SIR7_MOUSE NAD-dependent protein deacetylase sirtuin-7 OS=Mus musculus GN=Sirt7 PE=1 SV=2

 Score =  126 bits (316), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/195 (39%), Positives = 113/195 (57%), Gaps = 17/195 (8%)

Query: 2   PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSC--GVEY 59
           P++THM++  L +  +++ V+SQN D LHLRSG+PR  ++ELHGN + E+C SC    EY
Sbjct: 146 PTLTHMSITRLHEQKLVQHVVSQNCDGLHLRSGLPRTAISELHGNMYIEVCTSCIPNREY 205

Query: 60  MRDFEI-ETIGMKK--TPRRCSDVKCGSRLKDTVLDWEDALP---PVEMNPAEENCRMAD 113
           +R F++ E   + +  T R C   KCG++L+DT++ + +      P+    A E    AD
Sbjct: 206 VRVFDVTERTALHRHLTGRTCH--KCGTQLRDTIVHFGERGTLGQPLNWEAATEAASKAD 263

Query: 114 VVLCLGTSLQITPA-----CNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIA 168
            +LCLG+SL++        C     S R   K+ IVNLQ TPKD  A+L +H   D V+ 
Sbjct: 264 TILCLGSSLKVLKKYPRLWCMTKPPSRR--PKLYIVNLQWTPKDDWAALKLHGKCDDVMQ 321

Query: 169 GVMRHLNLWIPPYVR 183
            +M  L L IP Y R
Sbjct: 322 LLMNELGLEIPVYNR 336

NAD-dependent protein deacetylase. Required to restore the transcription of ribosomal RNA (rRNA) at the exit from mitosis. Promotes the association of RNA polymerase I with the rDNA promoter region and coding region. Stimulates transcription activity of the RNA polymerase I complex.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

>sp|Q9VAQ1|SIR7_DROME NAD-dependent protein deacetylase Sirt7 OS=Drosophila melanogaster GN=Sirt7 PE=1 SV=2

 Score =  124 bits (311), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 73/193 (37%), Positives = 109/193 (56%), Gaps = 13/193 (6%)

Query: 2   PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSC--GVEY 59
           P+ THMAL EL +  +L  V+SQN D LHLRSG+PR  L+E+HGN + E+C +C     Y
Sbjct: 169 PTYTHMALYELHRRRLLHHVVSQNCDGLHLRSGLPRNSLSEIHGNMYVEVCKNCRPNSVY 228

Query: 60  MRDFEIETIGMK---KTPRRCSDVKCGSRLKDTVLDWED---ALPPVEMNPAEENCRMAD 113
            R F+   +  +   KT R C   +C   L DT++ + +      P+    A  N + AD
Sbjct: 229 WRQFDTTEMTARYCHKTHRLCH--RCSEPLYDTIVHFGERGNVKWPLNWAGATANAQRAD 286

Query: 114 VVLCLGTSLQITPACNLPL---KSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGV 170
           V+LCLG+SL++           +  R   KI +VNLQ TPKD  AS+ ++   D+V+A +
Sbjct: 287 VILCLGSSLKVLKKYTWLWQMDRPARQRAKICVVNLQWTPKDAIASIKINGKCDQVMAQL 346

Query: 171 MRHLNLWIPPYVR 183
           M  L++ +P Y +
Sbjct: 347 MHLLHIPVPVYTK 359

NAD-dependent protein deacetylase.

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	266
449506405	552	PREDICTED: NAD-dependent protein deacety	0.936	0.451	0.752	1e-110
449462391	472	PREDICTED: NAD-dependent protein deacety	0.936	0.527	0.752	1e-109
356524368	574	PREDICTED: NAD-dependent deacetylase sir	0.958	0.444	0.743	1e-109
224056465	464	histone deacetylase [Populus trichocarpa	0.936	0.536	0.756	1e-108
225461927	467	PREDICTED: NAD-dependent deacetylase sir	0.936	0.533	0.756	1e-108
356566429	479	PREDICTED: NAD-dependent deacetylase sir	0.958	0.532	0.739	1e-108
359466799	467	sirtuin 1 [Vitis vinifera]	0.936	0.533	0.752	1e-108
255563480	466	chromatin regulatory protein sir2, putat	0.958	0.547	0.725	1e-106
297793049	473	hypothetical protein ARALYDRAFT_495661 [	0.936	0.526	0.721	1e-105
297790063	473	hypothetical protein ARALYDRAFT_497237 [	0.936	0.526	0.717	1e-105

>gi|449506405|ref|XP_004162741.1| PREDICTED: NAD-dependent protein deacetylase SRT1-like [Cucumis sativus]

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 189/251 (75%), Positives = 212/251 (84%), Gaps = 2/251 (0%)

Query: 1   MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYM 60
           MPSITHMALVELEKAGILKF+ISQN+D LHLRSGIPREKLAELHGNSF E CPSCG EY+
Sbjct: 61  MPSITHMALVELEKAGILKFIISQNIDGLHLRSGIPREKLAELHGNSFMETCPSCGAEYL 120

Query: 61  RDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGT 120
           RDFE+ETIG+K T RRCSD  CG++L+DTVLDWEDALPP EMNPAE +CRMAD+VLCLGT
Sbjct: 121 RDFEVETIGLKDTSRRCSDANCGAKLRDTVLDWEDALPPKEMNPAERHCRMADIVLCLGT 180

Query: 121 SLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLNLWIPP 180
           SLQITPACNLPLKSLRGGGKI+IVNLQ+TPKDKKASLV+H  VDKVIAGVM  LN+ IPP
Sbjct: 181 SLQITPACNLPLKSLRGGGKIIIVNLQKTPKDKKASLVIHGRVDKVIAGVMEILNMQIPP 240

Query: 181 YVRVDLFQINLDQYSRPSRSDKYVKWALRVGSVHRPKAPSPFVQSVEVSFSDRPDLKTAI 240
           +VR+DLFQI L Q    S   K+V W LR+ S+H  KAP PF++SVE+SF D  D K+  
Sbjct: 241 FVRIDLFQIILSQ--GLSLDKKFVNWTLRILSIHGQKAPLPFIKSVEISFLDNQDYKSTT 298

Query: 241 LNKQPFKLKRR 251
           L  QPF LKRR
Sbjct: 299 LQSQPFLLKRR 309

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462391|ref|XP_004148924.1| PREDICTED: NAD-dependent protein deacetylase SRT1-like [Cucumis sativus]

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 189/251 (75%), Positives = 212/251 (84%), Gaps = 2/251 (0%)

Query: 1   MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYM 60
           MPSITHMALVELEKAGILKF+ISQN+D LHLRSGIPREKLAELHGNSF E CPSCG EY+
Sbjct: 91  MPSITHMALVELEKAGILKFIISQNIDGLHLRSGIPREKLAELHGNSFMETCPSCGAEYL 150

Query: 61  RDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGT 120
           RDFE+ETIG+K T RRCSD  CG++L+DTVLDWEDALPP EMNPAE +CRMAD+VLCLGT
Sbjct: 151 RDFEVETIGLKDTSRRCSDANCGAKLRDTVLDWEDALPPKEMNPAERHCRMADIVLCLGT 210

Query: 121 SLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLNLWIPP 180
           SLQITPACNLPLKSLRGGGKI+IVNLQ+TPKDKKASLV+H  VDKVIAGVM  LN+ IPP
Sbjct: 211 SLQITPACNLPLKSLRGGGKIIIVNLQKTPKDKKASLVIHGRVDKVIAGVMEILNMQIPP 270

Query: 181 YVRVDLFQINLDQYSRPSRSDKYVKWALRVGSVHRPKAPSPFVQSVEVSFSDRPDLKTAI 240
           +VR+DLFQI L Q    S   K+V W LR+ S+H  KAP PF++SVE+SF D  D K+  
Sbjct: 271 FVRIDLFQIILSQ--GLSLDKKFVNWTLRILSIHGQKAPLPFIKSVEISFLDNQDYKSTT 328

Query: 241 LNKQPFKLKRR 251
           L  QPF LKRR
Sbjct: 329 LQSQPFLLKRR 339

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524368|ref|XP_003530801.1| PREDICTED: NAD-dependent deacetylase sirtuin-7-like [Glycine max]

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 191/257 (74%), Positives = 215/257 (83%), Gaps = 2/257 (0%)

Query: 2   PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
           PS+THMALVELEKAGILKFVISQNVD LHLRSGIPREKLAELHGNSF E CPSCG EY R
Sbjct: 138 PSLTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMETCPSCGEEYFR 197

Query: 62  DFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTS 121
           DFE+ETIG+K+T RRCS  KCG+RLKDTVLDWEDALP  EMNPAE++C+ AD+VLCLGTS
Sbjct: 198 DFEVETIGLKETSRRCSVAKCGTRLKDTVLDWEDALPSKEMNPAEKHCKQADIVLCLGTS 257

Query: 122 LQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLNLWIPPY 181
           LQITPACNLPLK+LRGGGK+VIVNLQ+TPKDKKASLV+H  VDKVIAGVM  LN+ I P+
Sbjct: 258 LQITPACNLPLKALRGGGKVVIVNLQKTPKDKKASLVIHGFVDKVIAGVMDQLNMQIHPF 317

Query: 182 VRVDLFQINLDQYSRPSRSDKYVKWALRVGSVHRPKAPSPFVQSVEVSFSDRPDLKTAIL 241
           VR+DLFQI L Q    S  ++YV W L+V SVH  KA  PF++SVE+SF DR D K AIL
Sbjct: 318 VRIDLFQIILVQA--LSNDERYVNWTLQVASVHGQKAALPFIESVEISFLDREDYKAAIL 375

Query: 242 NKQPFKLKRRKQITSAM 258
           +KQPF+LKRR     A 
Sbjct: 376 DKQPFRLKRRTAYNKAF 392

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224056465|ref|XP_002298870.1| histone deacetylase [Populus trichocarpa] gi|222846128|gb|EEE83675.1| histone deacetylase [Populus trichocarpa]

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 190/251 (75%), Positives = 215/251 (85%), Gaps = 2/251 (0%)

Query: 1   MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYM 60
           MPS+THMALVELEKAGILKF+ISQNVD LHLRSGIPREKLAELHGNSF E+CPSCGVEY 
Sbjct: 91  MPSMTHMALVELEKAGILKFIISQNVDGLHLRSGIPREKLAELHGNSFMEVCPSCGVEYF 150

Query: 61  RDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGT 120
           RDFE+ETIG+K+T RRCSDVKCG++LKDTVLDWEDALP  EM PAE++CRMADVVLCLGT
Sbjct: 151 RDFEVETIGLKETSRRCSDVKCGAKLKDTVLDWEDALPTKEMLPAEKHCRMADVVLCLGT 210

Query: 121 SLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLNLWIPP 180
           SLQITPACNLPLK LRGGGKI+IVNLQ+TPKDKKASLV+H  VDKVIAGVM  LNL I P
Sbjct: 211 SLQITPACNLPLKCLRGGGKIIIVNLQKTPKDKKASLVIHGFVDKVIAGVMNLLNLRIAP 270

Query: 181 YVRVDLFQINLDQYSRPSRSDKYVKWALRVGSVHRPKAPSPFVQSVEVSFSDRPDLKTAI 240
           YVR+DL Q+ + Q    S  ++YV W LRV S+H  KAP PF++S+EVSF+D    K A+
Sbjct: 271 YVRIDLLQVIITQ--SLSLDERYVNWNLRVASIHALKAPLPFIESIEVSFTDAQKYKAAV 328

Query: 241 LNKQPFKLKRR 251
           L+ QPF LKRR
Sbjct: 329 LHDQPFNLKRR 339

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461927|ref|XP_002265837.1| PREDICTED: NAD-dependent deacetylase sirtuin-6 [Vitis vinifera] gi|296089923|emb|CBI39742.3| unnamed protein product [Vitis vinifera]

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 190/251 (75%), Positives = 218/251 (86%), Gaps = 2/251 (0%)

Query: 1   MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYM 60
           MPS+THMALVELEKAGILKFVISQN+D LHLRSGIPR+KLAELHGNSF EIC SCG+EY+
Sbjct: 91  MPSMTHMALVELEKAGILKFVISQNIDGLHLRSGIPRDKLAELHGNSFMEICSSCGIEYL 150

Query: 61  RDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGT 120
           RDFE+ETIG+K+T RRCS+V CG++L+DTVLDWEDALPP EMNPAE++CRMADVVLCLGT
Sbjct: 151 RDFEVETIGLKETSRRCSNVDCGAKLRDTVLDWEDALPPKEMNPAEKHCRMADVVLCLGT 210

Query: 121 SLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLNLWIPP 180
           SLQITPACNLPLKSLRGGGKIVIVNLQ+TPKDKKASLV+H  VDKVIAGVM  LN+ IPP
Sbjct: 211 SLQITPACNLPLKSLRGGGKIVIVNLQETPKDKKASLVIHGFVDKVIAGVMDRLNMRIPP 270

Query: 181 YVRVDLFQINLDQYSRPSRSDKYVKWALRVGSVHRPKAPSPFVQSVEVSFSDRPDLKTAI 240
           +VR+DLFQ+ L      S   ++V W LRV SVH  KAP PF++ VEVSF D  + K A+
Sbjct: 271 FVRIDLFQVILTHTL--SSDKRFVNWILRVASVHGQKAPLPFIKYVEVSFLDGQNYKEAV 328

Query: 241 LNKQPFKLKRR 251
           L+KQPF+LKRR
Sbjct: 329 LHKQPFQLKRR 339

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566429|ref|XP_003551434.1| PREDICTED: NAD-dependent deacetylase sirtuin-6-like [Glycine max]

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 190/257 (73%), Positives = 213/257 (82%), Gaps = 2/257 (0%)

Query: 2   PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
           PS+THMALVELEKAGILKFVISQNVD LHLRSGIPREKLAELHGNSF E CPSCG EY R
Sbjct: 92  PSMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMETCPSCGEEYFR 151

Query: 62  DFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTS 121
           DFE+ETIG+K+T RRCS  KCG+RLKDTVLDWEDALP  EMNPAE++C+ AD+VLCLGTS
Sbjct: 152 DFEVETIGLKETSRRCSVAKCGTRLKDTVLDWEDALPTKEMNPAEKHCKQADIVLCLGTS 211

Query: 122 LQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLNLWIPPY 181
           LQITPACNLPLK+LRGGGK+VIVNLQ+TPKDKKASLV+H  VDKVIAGVM  LN+ I P+
Sbjct: 212 LQITPACNLPLKALRGGGKVVIVNLQKTPKDKKASLVIHGFVDKVIAGVMDQLNMQISPF 271

Query: 182 VRVDLFQINLDQYSRPSRSDKYVKWALRVGSVHRPKAPSPFVQSVEVSFSDRPDLKTAIL 241
           VR+DLFQI L Q    S   +YV W L+V S H  KA  PF++SVE+SF DR D K AIL
Sbjct: 272 VRIDLFQIILVQ--ALSNDKRYVNWTLQVASAHGQKAALPFIKSVEISFLDREDYKAAIL 329

Query: 242 NKQPFKLKRRKQITSAM 258
           +KQPF+LKRR     A 
Sbjct: 330 DKQPFRLKRRTAYNKAF 346

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359466799|gb|AEV46830.1| sirtuin 1 [Vitis vinifera]

 Score =  395 bits (1015), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 189/251 (75%), Positives = 217/251 (86%), Gaps = 2/251 (0%)

Query: 1   MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYM 60
           MPS+THMALVELEKAGILKFVISQN+D LHLRSGIPR+KLAELHGNSF EIC SCG+EY+
Sbjct: 91  MPSMTHMALVELEKAGILKFVISQNIDGLHLRSGIPRDKLAELHGNSFMEICSSCGIEYL 150

Query: 61  RDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGT 120
           RDFE+ETIG+K+T RRCS+V CG++L+DTVLDWEDALPP EMNPAE++CRMADVVLCLG 
Sbjct: 151 RDFEVETIGLKETSRRCSNVDCGAKLRDTVLDWEDALPPKEMNPAEKHCRMADVVLCLGA 210

Query: 121 SLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLNLWIPP 180
           SLQITPACNLPLKSLRGGGKIVIVNLQ+TPKDKKASLV+H  VDKVIAGVM  LN+ IPP
Sbjct: 211 SLQITPACNLPLKSLRGGGKIVIVNLQETPKDKKASLVIHGFVDKVIAGVMDRLNMRIPP 270

Query: 181 YVRVDLFQINLDQYSRPSRSDKYVKWALRVGSVHRPKAPSPFVQSVEVSFSDRPDLKTAI 240
           +VR+DLFQ+ L      S   ++V W LRV SVH  KAP PF++ VEVSF D  + K A+
Sbjct: 271 FVRIDLFQVILTHTL--SSDKRFVNWILRVASVHGQKAPLPFIKYVEVSFLDGQNYKEAV 328

Query: 241 LNKQPFKLKRR 251
           L+KQPF+LKRR
Sbjct: 329 LHKQPFQLKRR 339

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563480|ref|XP_002522742.1| chromatin regulatory protein sir2, putative [Ricinus communis] gi|223537980|gb|EEF39593.1| chromatin regulatory protein sir2, putative [Ricinus communis]

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/259 (72%), Positives = 217/259 (83%), Gaps = 4/259 (1%)

Query: 1   MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYM 60
           MPSITHMALVELE+AGI+KF+ISQNVD LHLRSGIPREKLAELHGNSF E CPSCG EY 
Sbjct: 91  MPSITHMALVELERAGIVKFIISQNVDGLHLRSGIPREKLAELHGNSFMESCPSCGAEYF 150

Query: 61  RDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGT 120
           RDFE+ETIG+K+T RRCSDVKCG++L+DTVLDWEDALPP EM PAE++CRM D+VLCLGT
Sbjct: 151 RDFEVETIGLKETSRRCSDVKCGAKLRDTVLDWEDALPPKEMLPAEKHCRMGDLVLCLGT 210

Query: 121 SLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLNLWIPP 180
           SLQITPACNLPLK LRGGGKIVIVNLQ+TPKDKKASLV+H  VDKVIAGVM  L++ IPP
Sbjct: 211 SLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVIAGVMHLLSMQIPP 270

Query: 181 YVRVDLFQINLDQYSRPSRSDK-YVKWALRVGSVHRPKAPSPFVQSVEVSFSDRPDLKTA 239
           YVR+DL QI +   +R   +DK +V W LR+ SVH  KA  PF++S+EV+FSD    K A
Sbjct: 271 YVRIDLLQIIV---TRSLSADKRFVNWTLRIASVHALKATLPFIKSIEVTFSDTQKYKAA 327

Query: 240 ILNKQPFKLKRRKQITSAM 258
           IL++QPF LKRR   T + 
Sbjct: 328 ILHEQPFNLKRRTVTTESF 346

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297793049|ref|XP_002864409.1| hypothetical protein ARALYDRAFT_495661 [Arabidopsis lyrata subsp. lyrata] gi|297310244|gb|EFH40668.1| hypothetical protein ARALYDRAFT_495661 [Arabidopsis lyrata subsp. lyrata]

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 181/251 (72%), Positives = 216/251 (86%), Gaps = 2/251 (0%)

Query: 1   MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYM 60
           MPS+THMALVELE+AGILKFVISQNVD LHLRSGIPREKL+ELHG+SF E+CPSCG EY+
Sbjct: 91  MPSMTHMALVELERAGILKFVISQNVDGLHLRSGIPREKLSELHGDSFMEMCPSCGAEYL 150

Query: 61  RDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGT 120
           RDFE+ETIG+K+T RRCS  KCG++LKDTVLDWEDALPP E++PAE++C+MAD+VLCLGT
Sbjct: 151 RDFEVETIGLKETSRRCSVEKCGAKLKDTVLDWEDALPPKEIDPAEKHCKMADLVLCLGT 210

Query: 121 SLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLNLWIPP 180
           SLQITPACNLPLK LRGGGKIVIVNLQ+TPKDKKA++V+H  VDKV+AGVM  LN+ IPP
Sbjct: 211 SLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKANVVIHGLVDKVVAGVMESLNMKIPP 270

Query: 181 YVRVDLFQINLDQYSRPSRSDKYVKWALRVGSVHRPKAPSPFVQSVEVSFSDRPDLKTAI 240
           YVR+DLFQI L Q    S   +++ W LRV SVH   +  PF++S+EVSFSD  + K A+
Sbjct: 271 YVRIDLFQIILTQ--SLSGDQRFINWTLRVASVHGLTSQLPFIESIEVSFSDNQNYKDAV 328

Query: 241 LNKQPFKLKRR 251
           L+KQPF +KRR
Sbjct: 329 LDKQPFLMKRR 339

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297790063|ref|XP_002862943.1| hypothetical protein ARALYDRAFT_497237 [Arabidopsis lyrata subsp. lyrata] gi|297308724|gb|EFH39202.1| hypothetical protein ARALYDRAFT_497237 [Arabidopsis lyrata subsp. lyrata]

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 180/251 (71%), Positives = 216/251 (86%), Gaps = 2/251 (0%)

Query: 1   MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYM 60
           MPS+THMALVELE+AGILKFVISQNVD LHLRSGIPREKL+ELHG+SF E+CPSCG +Y+
Sbjct: 91  MPSMTHMALVELERAGILKFVISQNVDGLHLRSGIPREKLSELHGDSFMEMCPSCGAKYL 150

Query: 61  RDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGT 120
           RDFE+ETIG+K+T RRCS  KCG++LKDTVLDWEDALPP E++PAE++C+MAD+VLCLGT
Sbjct: 151 RDFEVETIGLKETSRRCSVEKCGAKLKDTVLDWEDALPPKEIDPAEKHCKMADLVLCLGT 210

Query: 121 SLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLNLWIPP 180
           SLQITPACNLPLK LRGGGKIVIVNLQ+TPKDKKA++V+H  VDKV+AGVM  LN+ IPP
Sbjct: 211 SLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKANVVIHGLVDKVVAGVMESLNMKIPP 270

Query: 181 YVRVDLFQINLDQYSRPSRSDKYVKWALRVGSVHRPKAPSPFVQSVEVSFSDRPDLKTAI 240
           YVR+DLFQI L Q    S   +++ W LRV SVH   +  PF++S+EVSFSD  + K A+
Sbjct: 271 YVRIDLFQIILTQ--SLSGDQRFINWTLRVASVHGLTSQLPFIESIEVSFSDNQNYKDAV 328

Query: 241 LNKQPFKLKRR 251
           L+KQPF +KRR
Sbjct: 329 LDKQPFLMKRR 339

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	266
TAIR|locus:2162112	473	SRT1 "AT5G55760" [Arabidopsis	0.936	0.526	0.709	1.2e-95
RGD|1305216	330	Sirt6 "sirtuin 6" [Rattus norv	0.819	0.660	0.477	2.5e-49
UNIPROTKB|F1P0C4	357	SIRT6 "Uncharacterized protein	0.676	0.504	0.537	8.5e-49
MGI|MGI:1354161	334	Sirt6 "sirtuin 6 (silent matin	0.819	0.652	0.464	4.7e-48
UNIPROTKB|B4DDV3	283	SIRT6 "NAD-dependent protein d	0.736	0.692	0.495	4.2e-47
UNIPROTKB|Q8N6T7	355	SIRT6 "NAD-dependent protein d	0.736	0.552	0.495	4.2e-47
UNIPROTKB|E2QXD9	361	SIRT6 "Uncharacterized protein	0.736	0.542	0.490	8.8e-47
UNIPROTKB|J9NZY5	289	SIRT6 "Uncharacterized protein	0.736	0.678	0.490	8.8e-47
UNIPROTKB|A5D7K6	359	SIRT6 "SIRT6 protein" [Bos tau	0.736	0.545	0.490	1.1e-46
ZFIN|ZDB-GENE-031007-2	354	sirt6 "sirtuin (silent mating	0.676	0.508	0.489	1.7e-43

TAIR|locus:2162112 SRT1 "AT5G55760" [Arabidopsis thaliana (taxid:3702)]

 Score = 951 (339.8 bits), Expect = 1.2e-95, P = 1.2e-95
 Identities = 178/251 (70%), Positives = 215/251 (85%)

Query:     1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYM 60
             MPS+THMALVELE+AGILKFVISQNVD LHLRSGIPREKL+ELHG+SF E+CPSCG EY+
Sbjct:    91 MPSMTHMALVELERAGILKFVISQNVDGLHLRSGIPREKLSELHGDSFMEMCPSCGAEYL 150

Query:    61 RDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGT 120
             RDFE+ETIG+K+T R+CS  KCG++LKDTVLDWEDALPP E++PAE++C+ AD+VLCLGT
Sbjct:   151 RDFEVETIGLKETSRKCSVEKCGAKLKDTVLDWEDALPPKEIDPAEKHCKKADLVLCLGT 210

Query:   121 SLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLNLWIPP 180
             SLQITPACNLPLK L+GGGKIVIVNLQ+TPKDKKA++V+H  VDKV+AGVM  LN+ IPP
Sbjct:   211 SLQITPACNLPLKCLKGGGKIVIVNLQKTPKDKKANVVIHGLVDKVVAGVMESLNMKIPP 270

Query:   181 YVRVDLFQINLDQYSRPSRSDKYVKWALRVGSVHRPKAPSPFVQSVEVSFSDRPDLKTAI 240
             YVR+DLFQI L Q    S   +++ W LRV SVH   +  PF++S+EVSFSD  + K A+
Sbjct:   271 YVRIDLFQIILTQSI--SGDQRFINWTLRVASVHGLTSQLPFIKSIEVSFSDNHNYKDAV 328

Query:   241 LNKQPFKLKRR 251
             L+KQPF +KRR
Sbjct:   329 LDKQPFLMKRR 339

GO:0003677 "DNA binding" evidence=ISS

GO:0005677 "chromatin silencing complex" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006342 "chromatin silencing" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0006476 "protein deacetylation" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0070403 "NAD+ binding" evidence=IEA

RGD|1305216 Sirt6 "sirtuin 6" [Rattus norvegicus (taxid:10116)]

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 108/226 (47%), Positives = 147/226 (65%)

Query:     2 PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
             PS THMALV+LE+ G L F++SQNVD LH+RSG PR+KLAELHGN F E CP C  +Y+R
Sbjct:    91 PSKTHMALVQLERMGFLSFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECPKCKTQYVR 150

Query:    62 DFEIETIGMKKTPRRCSDVK------CGSRLKDTVLDWEDALPPVEMNPAEENCRMADVV 115
             D  + T+G+K T R C+  K      C   L+DT+LDWEDALP  ++  A+E  R AD+ 
Sbjct:   151 DTVVGTMGLKATGRLCTVAKARGLRACRGELRDTILDWEDALPDRDLTLADEASRTADLS 210

Query:   116 LCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLN 175
             + LGTSLQI P+ NLPL + R GG++VIVNLQ T  D++A L +H  VD+V+  +M+HL 
Sbjct:   211 VTLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRQADLCIHGYVDEVMCKLMKHLG 270

Query:   176 LWIPPYVRVDLFQINLDQYSRPSRSDKYVKWALRVGSVHRPKAPSP 221
             L IP +    + +  L    RP  + K  +  + +   ++PK  SP
Sbjct:   271 LEIPTWDGPRVLEKALPPLPRPV-APK-AEPPVHLNGSYKPKPDSP 314

GO:0003674 "molecular_function" evidence=ND

GO:0003956 "NAD(P)+-protein-arginine ADP-ribosyltransferase activity" evidence=IEA;ISO

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=ISO

GO:0005654 "nucleoplasm" evidence=IEA;ISO

GO:0005724 "nuclear telomeric heterochromatin" evidence=IEA;ISO

GO:0006471 "protein ADP-ribosylation" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0010569 "regulation of double-strand break repair via homologous recombination" evidence=IEA;ISO

GO:0046969 "NAD-dependent histone deacetylase activity (H3-K9 specific)" evidence=IEA;ISO

GO:0070403 "NAD+ binding" evidence=IEA

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|F1P0C4 SIRT6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
 Identities = 100/186 (53%), Positives = 134/186 (72%)

Query:     2 PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
             PS THMAL+ L++ GILKF++SQNVD LH+RSG PR+KLAELHGN F E C  CG +Y+R
Sbjct:    91 PSKTHMALLGLQRVGILKFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECMKCGKQYVR 150

Query:    62 DFEIETIGMKKTPRRCSDVK------CGSRLKDTVLDWEDALPPVEMNPAEENCRMADVV 115
             D  + ++G+K T R CS  K      C  +L+DT+LDWED+LP  ++  A+E CR AD+ 
Sbjct:   151 DAVVGSMGLKPTGRLCSVTKARGLRACRGKLRDTILDWEDSLPDRDLTLADEACRKADLS 210

Query:   116 LCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLN 175
             + LGTSLQI P+ NLPL + + GGK+VIVNLQ T  D++A L +HA VD V+  +M+HL 
Sbjct:   211 VTLGTSLQIKPSGNLPLITKKRGGKLVIVNLQATKHDRQADLRIHAYVDDVMTKLMKHLG 270

Query:   176 LWIPPY 181
             L +P +
Sbjct:   271 LEVPEW 276

GO:0070403 "NAD+ binding" evidence=IEA

GO:0003956 "NAD(P)+-protein-arginine ADP-ribosyltransferase activity" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0005724 "nuclear telomeric heterochromatin" evidence=IEA

GO:0006471 "protein ADP-ribosylation" evidence=IEA

GO:0010569 "regulation of double-strand break repair via homologous recombination" evidence=IEA

GO:0046969 "NAD-dependent histone deacetylase activity (H3-K9 specific)" evidence=IEA

MGI|MGI:1354161 Sirt6 "sirtuin 6 (silent mating type information regulation 2, homolog) 6 (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
 Identities = 106/228 (46%), Positives = 145/228 (63%)

Query:     2 PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
             PS THMALV+LE+ G L F++SQNVD LH+RSG PR+KLAELHGN F E CP C  +Y+R
Sbjct:    91 PSKTHMALVQLERMGFLSFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECPKCKTQYVR 150

Query:    62 DFEIETIGMKKTPRRCSDVK------CGSRLKDTVLDWEDALPPVEMNPAEENCRMADVV 115
             D  + T+G+K T R C+  K      C   L+DT+LDWED+LP  ++  A+E  R AD+ 
Sbjct:   151 DTVVGTMGLKATGRLCTVAKTRGLRACRGELRDTILDWEDSLPDRDLMLADEASRTADLS 210

Query:   116 LCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLN 175
             + LGTSLQI P+ NLPL + R GG++VIVNLQ T  D++A L +H  VD+V+  +M+HL 
Sbjct:   211 VTLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRQADLRIHGYVDEVMCRLMKHLG 270

Query:   176 LWIPPYVRVDLFQINLDQYSRP----SRSDKYVKWALRVGSVHRPKAP 219
             L IP +    +    L    RP    +    ++  A+ V    +P +P
Sbjct:   271 LEIPAWDGPCVLDKALPPLPRPVALKAEPPVHLNGAVHVSYKSKPNSP 318

GO:0003956 "NAD(P)+-protein-arginine ADP-ribosyltransferase activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005654 "nucleoplasm" evidence=ISO

GO:0005724 "nuclear telomeric heterochromatin" evidence=ISO

GO:0006471 "protein ADP-ribosylation" evidence=IDA

GO:0010569 "regulation of double-strand break repair via homologous recombination" evidence=ISO

GO:0016787 "hydrolase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0046969 "NAD-dependent histone deacetylase activity (H3-K9 specific)" evidence=ISO

GO:0070403 "NAD+ binding" evidence=IEA

GO:0070932 "histone H3 deacetylation" evidence=ISO

UNIPROTKB|B4DDV3 SIRT6 "NAD-dependent protein deacetylase sirtuin-6" [Homo sapiens (taxid:9606)]

 Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
 Identities = 100/202 (49%), Positives = 136/202 (67%)

Query:     2 PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
             P+ THMALV+LE+ G+L+F++SQNVD LH+RSG PR+KLAELHGN F E C  C  +Y+R
Sbjct:    19 PTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVR 78

Query:    62 DFEIETIGMKKTPRRCSDVK------CGSRLKDTVLDWEDALPPVEMNPAEENCRMADVV 115
             D  + T+G+K T R C+  K      C   L+DT+LDWED+LP  ++  A+E  R AD+ 
Sbjct:    79 DTVVGTMGLKATGRLCTVAKARGLRACRGELRDTILDWEDSLPDRDLALADEASRNADLS 138

Query:   116 LCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLN 175
             + LGTSLQI P+ NLPL + R GG++VIVNLQ T  D+ A L +H  VD+V+  +M+HL 
Sbjct:   139 ITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEVMTRLMKHLG 198

Query:   176 LWIPPYVRVDLFQINLDQYSRP 197
             L IP +    + +  L    RP
Sbjct:   199 LEIPAWDGPRVLERALPPLPRP 220

GO:0070403 "NAD+ binding" evidence=IEA

GO:0003956 "NAD(P)+-protein-arginine ADP-ribosyltransferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006471 "protein ADP-ribosylation" evidence=IEA

UNIPROTKB|Q8N6T7 SIRT6 "NAD-dependent protein deacetylase sirtuin-6" [Homo sapiens (taxid:9606)]

 Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
 Identities = 100/202 (49%), Positives = 136/202 (67%)

Query:     2 PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
             P+ THMALV+LE+ G+L+F++SQNVD LH+RSG PR+KLAELHGN F E C  C  +Y+R
Sbjct:    91 PTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVR 150

Query:    62 DFEIETIGMKKTPRRCSDVK------CGSRLKDTVLDWEDALPPVEMNPAEENCRMADVV 115
             D  + T+G+K T R C+  K      C   L+DT+LDWED+LP  ++  A+E  R AD+ 
Sbjct:   151 DTVVGTMGLKATGRLCTVAKARGLRACRGELRDTILDWEDSLPDRDLALADEASRNADLS 210

Query:   116 LCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLN 175
             + LGTSLQI P+ NLPL + R GG++VIVNLQ T  D+ A L +H  VD+V+  +M+HL 
Sbjct:   211 ITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEVMTRLMKHLG 270

Query:   176 LWIPPYVRVDLFQINLDQYSRP 197
             L IP +    + +  L    RP
Sbjct:   271 LEIPAWDGPRVLERALPPLPRP 292

GO:0005654 "nucleoplasm" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0008270 "zinc ion binding" evidence=ISS

GO:0003956 "NAD(P)+-protein-arginine ADP-ribosyltransferase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006471 "protein ADP-ribosylation" evidence=ISS;TAS

GO:0005724 "nuclear telomeric heterochromatin" evidence=IDA

GO:0046969 "NAD-dependent histone deacetylase activity (H3-K9 specific)" evidence=IDA

GO:0070403 "NAD+ binding" evidence=ISS

GO:0017136 "NAD-dependent histone deacetylase activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0010569 "regulation of double-strand break repair via homologous recombination" evidence=IDA

GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=TAS

UNIPROTKB|E2QXD9 SIRT6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 99/202 (49%), Positives = 136/202 (67%)

Query:     2 PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
             P+ THMALV+LE+ G+L+F++SQNVD LH+RSG PR+KLAELHGN F E C  C  +Y+R
Sbjct:    91 PTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECVKCKTQYVR 150

Query:    62 DFEIETIGMKKTPRRCSDVK------CGSRLKDTVLDWEDALPPVEMNPAEENCRMADVV 115
             D  + ++G++ T R C+  K      C   L+DT+LDWEDALP  ++  A+E  R AD+ 
Sbjct:   151 DTVVGSMGLRATGRLCTVAKARGLRACRGELRDTILDWEDALPDRDLTLADEASRNADLS 210

Query:   116 LCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLN 175
             + LGTSLQI P+ NLPL + R GG++VIVNLQ T  D+ A L +H  VD+V+  +M+HL 
Sbjct:   211 ITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEVMTRLMKHLG 270

Query:   176 LWIPPYVRVDLFQINLDQYSRP 197
             L IP +    + +  L    RP
Sbjct:   271 LEIPAWDGPRVLERALPPLPRP 292

GO:0046969 "NAD-dependent histone deacetylase activity (H3-K9 specific)" evidence=IEA

GO:0010569 "regulation of double-strand break repair via homologous recombination" evidence=IEA

GO:0006471 "protein ADP-ribosylation" evidence=IEA

GO:0005724 "nuclear telomeric heterochromatin" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0003956 "NAD(P)+-protein-arginine ADP-ribosyltransferase activity" evidence=IEA

GO:0070403 "NAD+ binding" evidence=IEA

UNIPROTKB|J9NZY5 SIRT6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 99/202 (49%), Positives = 136/202 (67%)

Query:     2 PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
             P+ THMALV+LE+ G+L+F++SQNVD LH+RSG PR+KLAELHGN F E C  C  +Y+R
Sbjct:    19 PTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECVKCKTQYVR 78

Query:    62 DFEIETIGMKKTPRRCSDVK------CGSRLKDTVLDWEDALPPVEMNPAEENCRMADVV 115
             D  + ++G++ T R C+  K      C   L+DT+LDWEDALP  ++  A+E  R AD+ 
Sbjct:    79 DTVVGSMGLRATGRLCTVAKARGLRACRGELRDTILDWEDALPDRDLTLADEASRNADLS 138

Query:   116 LCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLN 175
             + LGTSLQI P+ NLPL + R GG++VIVNLQ T  D+ A L +H  VD+V+  +M+HL 
Sbjct:   139 ITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEVMTRLMKHLG 198

Query:   176 LWIPPYVRVDLFQINLDQYSRP 197
             L IP +    + +  L    RP
Sbjct:   199 LEIPAWDGPRVLERALPPLPRP 220

GO:0070403 "NAD+ binding" evidence=IEA

UNIPROTKB|A5D7K6 SIRT6 "SIRT6 protein" [Bos taurus (taxid:9913)]

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 99/202 (49%), Positives = 136/202 (67%)

Query:     2 PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
             P+ THMALV+LE+ G+L F++SQNVD LH+RSG PR+KLAELHGN F E C  C ++Y+R
Sbjct:    91 PTKTHMALVQLERVGLLHFLVSQNVDGLHVRSGFPRDKLAELHGNMFIEECVKCKMQYVR 150

Query:    62 DFEIETIGMKKTPRRCSDVK------CGSRLKDTVLDWEDALPPVEMNPAEENCRMADVV 115
             D  + ++G+K T R C+  K      C   L+DT+LDWED+LP  ++  A+E  R AD+ 
Sbjct:   151 DTVVGSMGLKPTGRLCTVAKSRGLRACRGELRDTILDWEDSLPDRDLTLADEASRNADLS 210

Query:   116 LCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLN 175
             + LGTSLQI P+ NLPL + R GG++VIVNLQ T  D+ A L +H  VD+V+  +M+HL 
Sbjct:   211 ITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEVMTRLMKHLG 270

Query:   176 LWIPPYVRVDLFQINLDQYSRP 197
             L IP +    + +  L    RP
Sbjct:   271 LEIPAWDGPHMVERALPPLPRP 292

GO:0046969 "NAD-dependent histone deacetylase activity (H3-K9 specific)" evidence=IEA

GO:0010569 "regulation of double-strand break repair via homologous recombination" evidence=IEA

GO:0006471 "protein ADP-ribosylation" evidence=IEA

GO:0005724 "nuclear telomeric heterochromatin" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0003956 "NAD(P)+-protein-arginine ADP-ribosyltransferase activity" evidence=IEA

GO:0070403 "NAD+ binding" evidence=IEA

ZFIN|ZDB-GENE-031007-2 sirt6 "sirtuin (silent mating type information regulation 2 homolog) 6 (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 91/186 (48%), Positives = 129/186 (69%)

Query:     2 PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
             PS+THMAL+++++ G LK++ISQNVD LH+RSG PR++L+ELHGN F E C  CG +Y+R
Sbjct:    91 PSLTHMALLQMQRTGHLKYLISQNVDGLHVRSGFPRDRLSELHGNMFVEECEKCGKQYVR 150

Query:    62 DFEIETIGMKKTPRRCSDVK------CGSRLKDTVLDWEDALPPVEMNPAEENCRMADVV 115
             D  +  +G+K T R C  ++      C  +L  ++LDWED+LP  ++N A+E  R AD+ 
Sbjct:   151 DTVVGVMGLKPTGRYCDVMRSRGLRSCRGKLISSILDWEDSLPDRDLNRADEASRRADLA 210

Query:   116 LCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLN 175
             L LGTSLQI P+ +LPL + R GGK+VIVNLQ T  DK A L ++  VD V+  +M+ L 
Sbjct:   211 LTLGTSLQIKPSGDLPLLTKRTGGKLVIVNLQPTKHDKHAHLRIYGYVDDVMGQLMKLLG 270

Query:   176 LWIPPY 181
             L +P +
Sbjct:   271 LDVPEW 276

GO:0070403 "NAD+ binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FE17	SIR1_ARATH	3, ., 5, ., 1, ., -	0.7091	0.9360	0.5264	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.5.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	266
cd01410	206	cd01410, SIRT7, SIRT7: Eukaryotic and prokaryotic	2e-89
cd01407	218	cd01407, SIR2-fam, SIR2 family of proteins include	2e-61
cd00296	222	cd00296, SIR2, SIR2 superfamily of proteins includ	8e-53
PRK00481	242	PRK00481, PRK00481, NAD-dependent deacetylase; Pro	3e-39
cd01413	222	cd01413, SIR2_Af2, SIR2_Af2: Archaeal and prokaryo	9e-36
COG0846	250	COG0846, SIR2, NAD-dependent protein deacetylases,	4e-35
cd01412	224	cd01412, SIRT5_Af1_CobB, SIRT5_Af1_CobB: Eukaryoti	2e-30
PRK14138	244	PRK14138, PRK14138, NAD-dependent deacetylase; Pro	1e-29
pfam02146	177	pfam02146, SIR2, Sir2 family	1e-27
cd01411	225	cd01411, SIR2H, SIR2H: Uncharacterized prokaryotic	2e-23
PTZ00409	271	PTZ00409, PTZ00409, Sir2 (Silent Information Regul	3e-23
cd01409	260	cd01409, SIRT4, SIRT4: Eukaryotic and prokaryotic	1e-20
PTZ00408	242	PTZ00408, PTZ00408, NAD-dependent deacetylase; Pro	6e-14
cd01408	235	cd01408, SIRT1, SIRT1: Eukaryotic group (class1) w	8e-14
PRK05333	285	PRK05333, PRK05333, NAD-dependent deacetylase; Pro	3e-10
PTZ00410	349	PTZ00410, PTZ00410, NAD-dependent SIR2; Provisiona	2e-09

>gnl|CDD|238701 cd01410, SIRT7, SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation

 Score =  263 bits (674), Expect = 2e-89
 Identities = 103/162 (63%), Positives = 123/162 (75%), Gaps = 2/162 (1%)

Query: 1   MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYM 60
            P++THMALVELE+AG+LKFVISQNVD LHLRSG+PREKL+ELHGN F E+C SCG EY+
Sbjct: 47  EPTLTHMALVELERAGLLKFVISQNVDGLHLRSGLPREKLSELHGNMFIEVCKSCGPEYV 106

Query: 61  RDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGT 120
           RD  +ET G K+T RRC    CG  LKDT++D+ + LPP     A      AD+ LCLGT
Sbjct: 107 RDDVVETRGDKETGRRCH--ACGGILKDTIVDFGERLPPENWMGAAAAACRADLFLCLGT 164

Query: 121 SLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAP 162
           SLQ+TPA NLPLK+ R GG++VIVNLQ TPKDK A LV+H  
Sbjct: 165 SLQVTPAANLPLKAARAGGRLVIVNLQPTPKDKLADLVIHGD 206

Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. Length = 206

>gnl|CDD|238698 cd01407, SIR2-fam, SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose

 Score =  192 bits (491), Expect = 2e-61
 Identities = 72/162 (44%), Positives = 98/162 (60%), Gaps = 6/162 (3%)

Query: 1   MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYM 60
            P+  H AL ELE+ G LK VI+QNVD LH R+G P+  + ELHG+ FR  C  CG EY 
Sbjct: 63  QPNPAHRALAELERKGKLKRVITQNVDGLHQRAGSPK--VIELHGSLFRVRCTKCGKEYP 120

Query: 61  RDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGT 120
           RD     I  ++   RC   KCG  L+  V+ + ++LP  E++ A E    AD++L +GT
Sbjct: 121 RDELQADI-DREEVPRCP--KCGGLLRPDVVFFGESLPE-ELDEAAEALAKADLLLVIGT 176

Query: 121 SLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAP 162
           SLQ+ PA  LPL +   G  +VI+NL+ TP D+KA LV+   
Sbjct: 177 SLQVYPAAGLPLYAPERGAPVVIINLEPTPADRKADLVILGD 218

Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer. Length = 218

>gnl|CDD|238184 cd00296, SIR2, SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose

 Score =  170 bits (434), Expect = 8e-53
 Identities = 72/162 (44%), Positives = 96/162 (59%), Gaps = 8/162 (4%)

Query: 1   MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYM 60
            P+  H AL ELE+ G LK +I+QNVD LH R+G  R ++ ELHG+  R  C SCG EY 
Sbjct: 65  KPNPAHRALAELERKGKLKRIITQNVDGLHERAGSRRNRVIELHGSLDRVRCTSCGKEYP 124

Query: 61  RDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGT 120
           RD  +E     + P RC   KCG  L+  V+D+ +ALP    + A E    AD+VL +GT
Sbjct: 125 RDEVLER----EKPPRCP--KCGGLLRPDVVDFGEALPKEWFDRALEALLEADLVLVIGT 178

Query: 121 SLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVH 160
           SL + PA  L L++   G  +VI+N + TP D  KKA LV+ 
Sbjct: 179 SLTVYPAARLLLRAPERGAPVVIINREPTPADALKKADLVIL 220

Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer. Also included in this superfamily is a group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines. Length = 222

>gnl|CDD|234777 PRK00481, PRK00481, NAD-dependent deacetylase; Provisional

 Score =  136 bits (344), Expect = 3e-39
 Identities = 67/174 (38%), Positives = 94/174 (54%), Gaps = 11/174 (6%)

Query: 2   PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
           P+  H AL ELEK G L  VI+QN+D LH R+G   + + ELHG+  R  C  CG  Y  
Sbjct: 77  PNAAHRALAELEKLGKLVTVITQNIDGLHERAG--SKNVIELHGSLLRARCTKCGQTYDL 134

Query: 62  DFEIETIGMKKTPRRCSDVKCGSRLK-DTVLDWEDALPPVEMNPAEENCRMADVVLCLGT 120
           D       +K  P RC   KCG  L+ D VL + + LP + ++ A E    AD+ + +GT
Sbjct: 135 DEY-----LKPEPPRCP--KCGGILRPDVVL-FGEMLPELAIDEAYEALEEADLFIVIGT 186

Query: 121 SLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHL 174
           SL + PA  LP ++   G K V +NL+ TP D    LV+H    +V+  ++  L
Sbjct: 187 SLVVYPAAGLPYEAREHGAKTVEINLEPTPLDSLFDLVIHGKAGEVVPELVEEL 240

Length = 242

>gnl|CDD|238704 cd01413, SIR2_Af2, SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation

 Score =  126 bits (319), Expect = 9e-36
 Identities = 62/161 (38%), Positives = 87/161 (54%), Gaps = 6/161 (3%)

Query: 2   PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
           P+  H  L ELEK GI+K +I+QN+D LH R+G   + + ELHG      C +CG +Y  
Sbjct: 68  PNKAHYFLAELEKQGIIKAIITQNIDGLHQRAG--SKNVIELHGTLQTAYCVNCGSKY-- 123

Query: 62  DFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTS 121
           D E      K    RC   KCG  ++  V+ + + LP   +  A E  + AD+ + LG+S
Sbjct: 124 DLEEVKYAKKHEVPRCP--KCGGIIRPDVVLFGEPLPQALLREAIEAAKEADLFIVLGSS 181

Query: 122 LQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAP 162
           L + PA  LPL +   G K+VIVN  +TP D  A LV+   
Sbjct: 182 LVVYPANLLPLIAKENGAKLVIVNADETPFDYIADLVIQDK 222

Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression. Length = 222

>gnl|CDD|223915 COG0846, SIR2, NAD-dependent protein deacetylases, SIR2 family [Transcription]

 Score =  125 bits (317), Expect = 4e-35
 Identities = 60/175 (34%), Positives = 92/175 (52%), Gaps = 8/175 (4%)

Query: 2   PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
           P+  H AL ELE  G L  +I+QN+D LH R+G     + ELHG+  R  C  CG +Y  
Sbjct: 77  PNKAHYALAELEDKGKLLRIITQNIDGLHERAGSKN--VIELHGSLKRVRCSKCGNQYYD 134

Query: 62  DFEIETIGMKKTPRRCSDVKCGSRL--KDTVLDWEDALPPVEMNPAEENCRMADVVLCLG 119
           +  I+ I       RC   KCG  +   D V  + + LP   ++ A E  + AD+++ +G
Sbjct: 135 EDVIKFI-EDGLIPRCP--KCGGPVLRPDVVW-FGEPLPASFLDEALEALKEADLLIVIG 190

Query: 120 TSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHL 174
           TSL++ PA  LP  + R G K++ +NL+ T  D  A  V+     +V+  ++  L
Sbjct: 191 TSLKVYPAAGLPELAKRRGAKVIEINLEPTRLDPIADEVIRGDAGEVLPLLLEEL 245

Length = 250

>gnl|CDD|238703 cd01412, SIRT5_Af1_CobB, SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E

 Score =  112 bits (283), Expect = 2e-30
 Identities = 53/157 (33%), Positives = 77/157 (49%), Gaps = 9/157 (5%)

Query: 6   HMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEI 65
           H+AL ELE+      +I+QNVD LH R+G     + ELHG+ FR  C SCG     + EI
Sbjct: 68  HLALAELERRLPNVLLITQNVDGLHERAG--SRNVIELHGSLFRVRCSSCGYVGENNEEI 125

Query: 66  ETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQIT 125
                ++   RC   KCG  L+  V+ W     P+ +  A E    AD+ L +GTS  + 
Sbjct: 126 P----EEELPRCP--KCGGLLRPGVV-WFGESLPLALLEAVEALAKADLFLVIGTSGVVY 178

Query: 126 PACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAP 162
           PA  LP ++   G +++ +N + TP    A       
Sbjct: 179 PAAGLPEEAKERGARVIEINPEPTPLSPIADFAFRGK 215

coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity. . Length = 224

>gnl|CDD|172627 PRK14138, PRK14138, NAD-dependent deacetylase; Provisional

 Score =  111 bits (279), Expect = 1e-29
 Identities = 58/156 (37%), Positives = 92/156 (58%), Gaps = 5/156 (3%)

Query: 2   PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
           P++ H+ L +LE+ G+++ VI+QN+D LH ++G   +K+ ELHGN     C  CG  Y  
Sbjct: 74  PNLAHVLLAKLEEKGLIEAVITQNIDRLHQKAG--SKKVIELHGNVEEYYCVRCGKRYTV 131

Query: 62  DFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTS 121
           +  IE +     PR C D  C   ++  ++ + +ALP   +  A      A +++ +G+S
Sbjct: 132 EDVIEKLEKSDVPR-CDD--CSGLIRPNIVFFGEALPQDALREAIRLSSKASLMIVMGSS 188

Query: 122 LQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASL 157
           L + PA  LPL ++R GGK+VIVNL +TP D  A+L
Sbjct: 189 LVVYPAAELPLITVRSGGKLVIVNLGETPLDDIATL 224

Length = 244

>gnl|CDD|216902 pfam02146, SIR2, Sir2 family

 Score =  104 bits (261), Expect = 1e-27
 Identities = 43/127 (33%), Positives = 66/127 (51%), Gaps = 8/127 (6%)

Query: 1   MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYM 60
            P+  H  + ELE  G L  +I+QN+D LH R+G   +K+ ELHG+  +  C SC  +Y 
Sbjct: 58  QPNPAHYFIAELEDKGKLLRLITQNIDGLHERAGS--KKVVELHGSFAKARCVSCHKKYT 115

Query: 61  RDFEIETIGMKKTPRRCSDVKCGSRLK-DTVLDWEDALPPVEMNPAEENCRMADVVLCLG 119
            +  +          +C   KCG  LK D V   E+   P +   A E+   AD+++ +G
Sbjct: 116 GE-TLPERIDAAKVPKCD--KCGGLLKPDIVFFGEN--LPDKFFRAYEDVEEADLLIVIG 170

Query: 120 TSLQITP 126
           TSL++ P
Sbjct: 171 TSLKVYP 177

This region is characteristic of Silent information regulator 2 (Sir2) proteins, or sirtuins. These are protein deacetylases that depend on nicotine adenine dinucleotide (NAD). They are found in many subcellular locations, including the nucleus, cytoplasm and mitochondria. Eukaryotic forms play in important role in the regulation of transcriptional repression. Moreover, they are involved in microtubule organisation and DNA damage repair processes. Length = 177

>gnl|CDD|238702 cd01411, SIR2H, SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation

 Score = 94.7 bits (236), Expect = 2e-23
 Identities = 47/160 (29%), Positives = 80/160 (50%), Gaps = 13/160 (8%)

Query: 1   MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYM 60
            P+I H  + ELEK G LK VI+QN+D LH ++G   + + E HG+ +R  C  CG    
Sbjct: 73  KPNIIHQKMAELEKMG-LKAVITQNIDGLHQKAG--SKNVVEFHGSLYRIYCTVCGKTVD 129

Query: 61  RDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGT 120
            +         K+P      KCG  ++  ++ +E+ L    +  A +    AD+++ +GT
Sbjct: 130 WE------EYLKSPYH---AKCGGVIRPDIVLYEEMLNESVIEEAIQAIEKADLLVIVGT 180

Query: 121 SLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH 160
           S  + P   L +   + G  ++ +N + T  D  A+LV+ 
Sbjct: 181 SFVVYPFAGL-IDYRQAGANLIAINKEPTQLDSPATLVIK 219

Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. Length = 225

>gnl|CDD|173599 PTZ00409, PTZ00409, Sir2 (Silent Information Regulator) protein; Provisional

 Score = 95.0 bits (236), Expect = 3e-23
 Identities = 51/153 (33%), Positives = 79/153 (51%), Gaps = 10/153 (6%)

Query: 1   MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYM 60
             +  H+AL  LE  G LKFV++QNVD LH  SG    K+  LHG+ F   C +C  + +
Sbjct: 91  ELNPGHVALSTLESLGYLKFVVTQNVDGLHEESG--NTKVIPLHGSVFEARCCTCR-KTI 147

Query: 61  RDFEI----ETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVL 116
           +  +I     +  M + P  C    CG   K  V+ + + +P   +  AE+     D++L
Sbjct: 148 QLNKIMLQKTSHFMHQLPPECP---CGGIFKPNVILFGEVIPKSLLKQAEKEIDKCDLLL 204

Query: 117 CLGTSLQITPACNLPLKSLRGGGKIVIVNLQQT 149
            +GTS  ++ A NL  ++ R   KIV VN+ +T
Sbjct: 205 VVGTSSSVSTATNLCYRAHRKKKKIVEVNISKT 237

Length = 271

>gnl|CDD|238700 cd01409, SIRT4, SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation

 Score = 87.7 bits (218), Expect = 1e-20
 Identities = 58/190 (30%), Positives = 80/190 (42%), Gaps = 26/190 (13%)

Query: 2   PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGV---- 57
           P+  H AL  LE AG L  +I+QNVD LH ++G     + ELHG+  R +C SCG     
Sbjct: 73  PNAAHRALAALEAAGRLHGLITQNVDGLHTKAG--SRNVVELHGSLHRVVCLSCGFRTPR 130

Query: 58  -EYMRDFEIETIGMK---KTPRRCSDV----------------KCGSRLKDTVLDWEDAL 97
            E     E    G            DV                +CG  LK  V+ + + +
Sbjct: 131 AELQDRLEALNPGFAEQAAGQAPDGDVDLEDEQVAGFRVPECERCGGVLKPDVVFFGENV 190

Query: 98  PPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASL 157
           P   +  A      AD +L LG+SL +       L +   G  I IVN+  T  D  A+L
Sbjct: 191 PRDRVVTAAARLAEADALLVLGSSLMVYSGYRFVLAAAEAGLPIAIVNIGPTRADHLATL 250

Query: 158 VVHAPVDKVI 167
            V A   +V+
Sbjct: 251 KVDARCGEVL 260

Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. Length = 260

>gnl|CDD|240405 PTZ00408, PTZ00408, NAD-dependent deacetylase; Provisional

 Score = 69.1 bits (169), Expect = 6e-14
 Identities = 47/179 (26%), Positives = 77/179 (43%), Gaps = 21/179 (11%)

Query: 2   PSITHMALVELEKA--GILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEY 59
           P+  H AL +LE+   G    V++QNVD+LH R+G     +  +HG   +  C + G   
Sbjct: 70  PNKAHFALAKLEREYRGGKVVVVTQNVDNLHERAG--STHVLHMHGELLKVRCTATG--- 124

Query: 60  MRDFEIETIGMKKTPRRCSDVKCGSRLK-DTVLDWEDALPPVEMNPAEENCRMADVVLCL 118
              F+     +  + R C    C   L+   V   E  L    M+  E      D+ + +
Sbjct: 125 -HVFDWTEDVVHGSSR-CKCCGCVGTLRPHIVWFGEMPLY---MDEIESVMSKTDLFVAV 179

Query: 119 GTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--------KASLVVHAPVDKVIAG 169
           GTS  + PA     ++   G   + +NL++             KAS++V A VD+V+  
Sbjct: 180 GTSGNVYPAAGFVGRAQFYGATTLELNLEEGTNYSQFDESIYGKASVIVPAWVDRVLKL 238

Length = 242

>gnl|CDD|238699 cd01408, SIRT1, SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation

 Score = 68.8 bits (169), Expect = 8e-14
 Identities = 40/131 (30%), Positives = 73/131 (55%), Gaps = 3/131 (2%)

Query: 1   MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYM 60
            PS+ H  +  LE  G+L    +QN+D+L   +G+P +++ E HG+     C  C  +Y 
Sbjct: 68  KPSVAHYFIKLLEDKGLLLRNYTQNIDTLERVAGVPDDRIIEAHGSFATAHCIKCKHKYP 127

Query: 61  RDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGT 120
            D+  E I  ++ P +C   +CG  +K  ++ + ++LP    +  EE+   AD+++ +GT
Sbjct: 128 GDWMREDIFNQEVP-KCP--RCGGLVKPDIVFFGESLPSRFFSHMEEDKEEADLLIVIGT 184

Query: 121 SLQITPACNLP 131
           SL++ P  +LP
Sbjct: 185 SLKVAPFASLP 195

Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity. Length = 235

>gnl|CDD|235415 PRK05333, PRK05333, NAD-dependent deacetylase; Provisional

 Score = 58.9 bits (143), Expect = 3e-10
 Identities = 52/199 (26%), Positives = 84/199 (42%), Gaps = 26/199 (13%)

Query: 2   PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
           P+  H AL  L  AG ++ +++QNVD LH R+G     + ELHG      C  CG  + R
Sbjct: 83  PNAAHHALARLGAAGRIERLVTQNVDGLHQRAG--SRDVIELHGRLDGVRCMGCGARHPR 140

Query: 62  -DFEI-------ETIGMKKTPRRCSDV----------------KCGSRLKDTVLDWEDAL 97
            + +        E + ++  P    D                  CG  LK  V+ + + +
Sbjct: 141 AEIQHVLEAANPEWLALEAAPAPDGDADLEWAAFDHFRVPACPACGGILKPDVVFFGENV 200

Query: 98  PPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASL 157
           P   +  A      AD VL +G+SL +       + + + G  I  +NL +T  D   +L
Sbjct: 201 PRERVAAARAALDAADAVLVVGSSLMVYSGYRFCVWAAQQGKPIAALNLGRTRADPLLTL 260

Query: 158 VVHAPVDKVIAGVMRHLNL 176
            V A   + +A ++  L L
Sbjct: 261 KVEASCAQALAALVARLGL 279

Length = 285

>gnl|CDD|185600 PTZ00410, PTZ00410, NAD-dependent SIR2; Provisional

 Score = 56.8 bits (137), Expect = 2e-09
 Identities = 38/132 (28%), Positives = 56/132 (42%), Gaps = 6/132 (4%)

Query: 2   PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
           P+  H  +  L   G L    +QN+D L   +G+P   L E HG+     C  C   Y  
Sbjct: 100 PTAVHHFIRLLADEGRLLRCCTQNIDGLERAAGVPPSLLVEAHGSFSAASCIECHTPY-- 157

Query: 62  DFEIETI-GMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGT 120
           D E   +         CS   CG  +K  V+ + + LP    N   +    A+++L +GT
Sbjct: 158 DIEQAYLEARSGKVPHCS--TCGGIVKPDVVFFGENLPDAFFNVHHD-IPEAELLLIIGT 214

Query: 121 SLQITPACNLPL 132
           SLQ+ P   L  
Sbjct: 215 SLQVHPFALLAC 226

Length = 349

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	266
KOG1905	353	consensus Class IV sirtuins (SIR2 family) [Chromat	100.0
PRK14138	244	NAD-dependent deacetylase; Provisional	100.0
cd01410	206	SIRT7 SIRT7: Eukaryotic and prokaryotic group (cla	100.0
cd01408	235	SIRT1 SIRT1: Eukaryotic group (class1) which inclu	100.0
cd01409	260	SIRT4 SIRT4: Eukaryotic and prokaryotic group (cla	100.0
PTZ00409	271	Sir2 (Silent Information Regulator) protein; Provi	100.0
PRK05333	285	NAD-dependent deacetylase; Provisional	100.0
cd01413	222	SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group	100.0
COG0846	250	SIR2 NAD-dependent protein deacetylases, SIR2 fami	100.0
PRK00481	242	NAD-dependent deacetylase; Provisional	100.0
PTZ00408	242	NAD-dependent deacetylase; Provisional	100.0
cd01412	224	SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaea	100.0
cd01407	218	SIR2-fam SIR2 family of proteins includes silent i	100.0
PTZ00410	349	NAD-dependent SIR2; Provisional	100.0
cd01411	225	SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homo	100.0
cd00296	222	SIR2 SIR2 superfamily of proteins includes silent	100.0
KOG2683	305	consensus Sirtuin 4 and related class II sirtuins	100.0
PF02146	178	SIR2: Sir2 family; InterPro: IPR003000 These seque	100.0
KOG2682	314	consensus NAD-dependent histone deacetylases and c	100.0
KOG2684	412	consensus Sirtuin 5 and related class III sirtuins	100.0
PF00205	137	TPP_enzyme_M: Thiamine pyrophosphate enzyme, centr	96.81
cd01406	242	SIR2-like Sir2-like: Prokaryotic group of uncharac	96.75
PRK07979	574	acetolactate synthase 3 catalytic subunit; Validat	95.14
PRK08322	547	acetolactate synthase; Reviewed	95.09
PRK07524	535	hypothetical protein; Provisional	95.05
PRK08979	572	acetolactate synthase 3 catalytic subunit; Validat	95.05
PRK07418	616	acetolactate synthase 3 catalytic subunit; Reviewe	95.01
CHL00099	585	ilvB acetohydroxyacid synthase large subunit	95.0
PRK06882	574	acetolactate synthase 3 catalytic subunit; Validat	94.94
PF13289	143	SIR2_2: SIR2-like domain	94.87
TIGR01504	588	glyox_carbo_lig glyoxylate carboligase. Glyoxylate	94.81
PRK08527	563	acetolactate synthase 3 catalytic subunit; Validat	94.8
PRK07789	612	acetolactate synthase 1 catalytic subunit; Validat	94.77
PRK09107	595	acetolactate synthase 3 catalytic subunit; Validat	94.73
PRK06466	574	acetolactate synthase 3 catalytic subunit; Validat	94.7
PRK05858	542	hypothetical protein; Provisional	94.66
PRK06154	565	hypothetical protein; Provisional	94.57
PRK06456	572	acetolactate synthase catalytic subunit; Reviewed	94.57
PRK06725	570	acetolactate synthase 3 catalytic subunit; Validat	94.51
PLN02470	585	acetolactate synthase	94.47
TIGR02418	539	acolac_catab acetolactate synthase, catabolic. Ace	94.42
TIGR03254	554	oxalate_oxc oxalyl-CoA decarboxylase. In a number	94.3
PRK08327	569	acetolactate synthase catalytic subunit; Validated	94.27
PRK08978	548	acetolactate synthase 2 catalytic subunit; Reviewe	94.26
PRK11269	591	glyoxylate carboligase; Provisional	94.26
PRK08199	557	thiamine pyrophosphate protein; Validated	94.15
PRK08155	564	acetolactate synthase catalytic subunit; Validated	94.12
TIGR00118	558	acolac_lg acetolactate synthase, large subunit, bi	94.09
PRK07282	566	acetolactate synthase catalytic subunit; Reviewed	94.03
PRK08266	542	hypothetical protein; Provisional	93.95
PRK09259	569	putative oxalyl-CoA decarboxylase; Validated	93.9
PRK08611	576	pyruvate oxidase; Provisional	93.86
PRK08273	597	thiamine pyrophosphate protein; Provisional	93.81
PRK06276	586	acetolactate synthase catalytic subunit; Reviewed	93.79
PRK06048	561	acetolactate synthase 3 catalytic subunit; Reviewe	93.78
PRK06112	578	acetolactate synthase catalytic subunit; Validated	93.77
PRK06965	587	acetolactate synthase 3 catalytic subunit; Validat	93.76
PRK07525	588	sulfoacetaldehyde acetyltransferase; Validated	93.76
COG0028	550	IlvB Thiamine pyrophosphate-requiring enzymes [ace	93.75
TIGR03457	579	sulphoacet_xsc sulfoacetaldehyde acetyltransferase	93.57
PRK06546	578	pyruvate dehydrogenase; Provisional	93.46
PRK08617	552	acetolactate synthase; Reviewed	93.39
TIGR00173	432	menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohex	93.28
PRK07710	571	acetolactate synthase catalytic subunit; Reviewed	93.0
PRK07064	544	hypothetical protein; Provisional	92.89
TIGR02720	575	pyruv_oxi_spxB pyruvate oxidase. Members of this f	92.79
PLN00022	356	electron transfer flavoprotein subunit alpha; Prov	92.53
PRK11916	312	electron transfer flavoprotein subunit YdiR; Provi	92.42
PRK03363	313	fixB putative electron transfer flavoprotein FixB;	92.33
PRK09124	574	pyruvate dehydrogenase; Provisional	92.25
COG2025	313	FixB Electron transfer flavoprotein, alpha subunit	91.78
KOG1185	571	consensus Thiamine pyrophosphate-requiring enzyme	91.46
PLN02573	578	pyruvate decarboxylase	89.61
PRK07092	530	benzoylformate decarboxylase; Reviewed	89.46
PRK06457	549	pyruvate dehydrogenase; Provisional	89.43
cd02766	501	MopB_3 The MopB_3 CD includes a group of related u	89.36
cd02750	461	MopB_Nitrate-R-NarG-like Respiratory nitrate reduc	89.07
COG3962	617	Acetolactate synthase [Amino acid transport and me	88.33
PRK09444	462	pntB pyridine nucleotide transhydrogenase; Provisi	88.21
cd02765	567	MopB_4 The MopB_4 CD includes a group of related u	88.15
cd02759	477	MopB_Acetylene-hydratase The MopB_Acetylene-hydrat	88.08
TIGR03393	539	indolpyr_decarb indolepyruvate decarboxylase, Erwi	88.01
PF02233	463	PNTB: NAD(P) transhydrogenase beta subunit; InterP	87.53
cd02753	512	MopB_Formate-Dh-H Formate dehydrogenase H (Formate	86.65
smart00834	41	CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C	86.12
cd02767	574	MopB_ydeP The MopB_ydeP CD includes a group of rel	86.02
PRK07449	568	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1	86.01
COG3383	978	Uncharacterized anaerobic dehydrogenase [General f	84.99
cd02768	386	MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The Nuo	84.86
cd02755	454	MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-lik	84.76
TIGR03479	912	DMSO_red_II_alp DMSO reductase family type II enzy	84.55
cd02763	679	MopB_2 The MopB_2 CD includes a group of related u	83.8
cd02754	565	MopB_Nitrate-R-NapA-like Nitrate reductases, NapA	83.66
PRK09939	759	putative oxidoreductase; Provisional	83.48
PF09723	42	Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR0134	83.37
cd02762	539	MopB_1 The MopB_1 CD includes a group of related u	83.01
TIGR01591	671	Fdh-alpha formate dehydrogenase, alpha subunit, ar	83.0
TIGR01553	1009	formate-DH-alph formate dehydrogenase, alpha subun	82.94
TIGR00509	770	bisC_fam molybdopterin guanine dinucleotide-contai	82.68
cd02770	617	MopB_DmsA-EC This CD (MopB_DmsA-EC) includes the D	82.55
PF03366	84	YEATS: YEATS family; InterPro: IPR005033 Named the	82.44
cd00368	374	Molybdopterin-Binding Molybdopterin-Binding (MopB)	81.84
cd02760	760	MopB_Phenylacetyl-CoA-OR The MopB_Phenylacetyl-CoA	81.17
TIGR01701	743	Fdhalpha-like oxidoreductase alpha (molybdopterin)	80.01

>KOG1905 consensus Class IV sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]

Probab=100.00  E-value=5.5e-50  Score=360.87  Aligned_cols=243  Identities=47%  Similarity=0.750  Sum_probs=217.1

Q ss_pred             CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCCCC
Q 024533            1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDV   80 (266)
Q Consensus         1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~   80 (266)
                      +|+.+||+|.+|++.|++++||||||||||.|+|+|+++++||||||+.+.|.+|..+|.++..+++++.+.+.+.|...
T Consensus       100 rPt~THmai~~Lhr~gll~~viSQNvDGLhlrsGlPr~~LsElHGNmfiEvC~sC~~~yvr~~~v~t~gl~at~R~ct~~  179 (353)
T KOG1905|consen  100 RPTVTHMAIVALHRAGLLKHVISQNVDGLHLRSGLPREKLSELHGNMFIEVCKSCRPEYVRDRVVDTVGLKATGRHCTGR  179 (353)
T ss_pred             CCcchHHHHHHHHHcchhhhhhhccccchhhccCCCHHHHHHHhcchHHHHhhhhcccceehhheeeccccccccccccc
Confidence            59999999999999999999999999999999999999999999999999999999999999988888877655554422


Q ss_pred             ------CCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCC
Q 024533           81 ------KCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKK  154 (266)
Q Consensus        81 ------~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~  154 (266)
                            .|.|.+++.++.|+..+|...|+.|.++.++||++|++||||+|.|..++|..+.+.|+++++||+|+|+.|+.
T Consensus       180 k~~~~rscrg~l~d~~ldwe~~lpln~l~~a~~a~~~Ad~~lcLGTSLqI~p~g~lpl~~~k~g~K~~ivNlQ~T~hDk~  259 (353)
T KOG1905|consen  180 KCRKCRSCRGTLRDFGLDWEDELPLNDLDRATKAAKRADLILCLGTSLQILPKGNLPLKMKKRGGKIVIVNLQWTPHDKI  259 (353)
T ss_pred             ccccccccccchhhccccccccCCchhhHHHHHHhhhcceEEEeccceEeeeCCCcchhHhccCceEEEEeCccCcccch
Confidence                  35678899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccEEEECcHHHHHHHHHHHcccCCCCccc-ccceeeeccccCCCCCCCcccceeEeeeccCCCCCCCCCceEEEeecCCC
Q 024533          155 ASLVVHAPVDKVIAGVMRHLNLWIPPYVR-VDLFQINLDQYSRPSRSDKYVKWALRVGSVHRPKAPSPFVQSVEVSFSDR  233 (266)
Q Consensus       155 adl~I~g~~~evl~~L~~~L~~~ip~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (266)
                      |++.|+|++|.||..||+.||++||.|++ +|++++..+..  .......+.|.+...++++-..+.+|+..+. |    
T Consensus       260 A~l~Ihg~vd~Vm~~lm~~LgveIp~y~~~~d~~~~~~t~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s----  332 (353)
T KOG1905|consen  260 ANLKIHGKVDLVMASLMELLGVEIPAYDRLPDPIFILLTLS--RPGEEHTIPQPLLKNSVEETTKQEPFISTIS-S----  332 (353)
T ss_pred             hheeehhhHHHHHHHHHHHhCCCCCcccCCCcccccccccC--CCCccccccccccccccccCCCCCccccccc-c----
Confidence            99999999999999999999999999997 78888776654  2223478888888999999888899999888 1    


Q ss_pred             CcchhccccCCCceEEeeeccc
Q 024533          234 PDLKTAILNKQPFKLKRRKQIT  255 (266)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~  255 (266)
                           +++.+++|.-.+++.+.
T Consensus       333 -----pi~~~~~~~~~~k~~rr  349 (353)
T KOG1905|consen  333 -----PILKGPRIRTPIKNGRR  349 (353)
T ss_pred             -----ccccCCCCcCCccCccc
Confidence                 37778888776666554

>PRK14138 NAD-dependent deacetylase; Provisional

Probab=100.00  E-value=2.7e-48  Score=349.15  Aligned_cols=171  Identities=35%  Similarity=0.603  Sum_probs=159.2

Q ss_pred             CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCCCC
Q 024533            1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDV   80 (266)
Q Consensus         1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~   80 (266)
                      +||++|++|++|+++|++.+||||||||||+|||.  ++|+|+|||++..+|.+|++.|+.+.....+. ...+|+||  
T Consensus        73 ~Pn~~H~ala~L~~~g~~~~viTQNIDgLh~~aG~--~~VielHG~~~~~~C~~C~~~~~~~~~~~~~~-~~~~p~Cp--  147 (244)
T PRK14138         73 KPNLAHVLLAKLEEKGLIEAVITQNIDRLHQKAGS--KKVIELHGNVEEYYCVRCGKRYTVEDVIEKLE-KSDVPRCD--  147 (244)
T ss_pred             CCCHHHHHHHHHHHcCCceEEEeecccChhhHcCC--CeEEEccCCcCeeEECCCCCcccHHHHHHHHh-cCCCCCCC--
Confidence            59999999999999999999999999999999995  78999999999999999999998765544322 33579999  


Q ss_pred             CCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCCccEEEE
Q 024533           81 KCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH  160 (266)
Q Consensus        81 ~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~  160 (266)
                      .|||.+||+||||||++|++.++++.+++++||++|||||||+|+|+++|+..+.++|+++++||+++|+.|..+++.|+
T Consensus       148 ~Cgg~lrP~Vv~FgE~~p~~~~~~~~~~~~~aDl~lviGTSl~V~pa~~l~~~~~~~g~~~i~iN~~~t~~d~~~~~~i~  227 (244)
T PRK14138        148 DCSGLIRPNIVFFGEALPQDALREAIRLSSKASLMIVMGSSLVVYPAAELPLITVRSGGKLVIVNLGETPLDDIATLKYN  227 (244)
T ss_pred             CCCCeECCCEEECCCcCCHHHHHHHHHHHhcCCEEEEeCcCCeeecHhHHHHHHHHcCCeEEEEcCCCCCCCcceeEEEe
Confidence            89999999999999999999899999999999999999999999999999998999999999999999999999999999


Q ss_pred             CcHHHHHHHHHHHccc
Q 024533          161 APVDKVIAGVMRHLNL  176 (266)
Q Consensus       161 g~~~evl~~L~~~L~~  176 (266)
                      |+++++|++|++.||+
T Consensus       228 ~~~~~~l~~l~~~~~~  243 (244)
T PRK14138        228 MDVVEFANRVMSEGGI  243 (244)
T ss_pred             CCHHHHHHHHHHHhCC
Confidence            9999999999998875

>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation

Probab=100.00  E-value=2.7e-48  Score=341.15  Aligned_cols=160  Identities=64%  Similarity=1.025  Sum_probs=149.7

Q ss_pred             CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCCCC
Q 024533            1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDV   80 (266)
Q Consensus         1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~   80 (266)
                      +||++|++|++|+++|++++||||||||||+|||++.++|+|+|||++..+|++|++.|..++....+.....+|+|+  
T Consensus        47 ~Pn~~H~~La~l~~~g~~~~viTQNID~Lh~~AG~~~~~vielHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~p~C~--  124 (206)
T cd01410          47 EPTLTHMALVELERAGLLKFVISQNVDGLHLRSGLPREKLSELHGNMFIEVCKSCGPEYVRDDVVETRGDKETGRRCH--  124 (206)
T ss_pred             CCCHHHHHHHHHHHCCCCceEEecCccchHhHcCcCcccEEEecCCcCcccCCCCCCccchHHHHHHhhcCCCCCcCC--
Confidence            599999999999999999999999999999999998889999999999999999999988776665554445689998  


Q ss_pred             CCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCCccEEEE
Q 024533           81 KCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH  160 (266)
Q Consensus        81 ~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~  160 (266)
                      .|||.+||+||||||.+|...++++.+++++||++|||||||+|+|+++|+..++++|+++|+||+++++.|..+|+.|+
T Consensus       125 ~Cgg~lrP~VV~FgE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~~~~~g~~vi~iN~~~~~~d~~~d~~~~  204 (206)
T cd01410         125 ACGGILKDTIVDFGERLPPENWMGAAAAACRADLFLCLGTSLQVTPAANLPLKAARAGGRLVIVNLQPTPKDKLADLVIH  204 (206)
T ss_pred             CCcCccCCcEEECCCCCCHHHHHHHHHHHhcCCEEEEECcCceehhHHHHHHHHHhcCCeEEEECCCCCCCCccccEEEe
Confidence            89999999999999999998899999999999999999999999999999998999999999999999999999999998


Q ss_pred             Cc
Q 024533          161 AP  162 (266)
Q Consensus       161 g~  162 (266)
                      |+
T Consensus       205 ~~  206 (206)
T cd01410         205 GD  206 (206)
T ss_pred             CC
Confidence            75

Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.

>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation

Probab=100.00  E-value=4.2e-48  Score=346.08  Aligned_cols=166  Identities=25%  Similarity=0.451  Sum_probs=151.3

Q ss_pred             CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCCCC
Q 024533            1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDV   80 (266)
Q Consensus         1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~   80 (266)
                      +||.+|++|++|+++|++++||||||||||+|||++.++|+|||||++..+|..|++.|+.++....+. ....|+|+  
T Consensus        68 ~Pn~~H~~la~L~~~g~~~~viTQNiD~Lh~raG~~~~~V~elHG~l~~~~C~~C~~~~~~~~~~~~~~-~~~~p~C~--  144 (235)
T cd01408          68 KPSVAHYFIKLLEDKGLLLRNYTQNIDTLERVAGVPDDRIIEAHGSFATAHCIKCKHKYPGDWMREDIF-NQEVPKCP--  144 (235)
T ss_pred             CCCHHHHHHHHHHhcCCceEEEEeccchHHHHcCCCccCEEEeCcCCCccccccCCCcCCHHHHHHHHh-CCCCccCC--
Confidence            699999999999999999999999999999999998889999999999999999999988765443332 23479998  


Q ss_pred             CCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC--CCccEE
Q 024533           81 KCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLV  158 (266)
Q Consensus        81 ~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d--~~adl~  158 (266)
                      .|||.|||+||||||.+|++.+..+.+++++||++|||||||+|+|++.|+..++ .|+++|+||+++++.+  ..+|++
T Consensus       145 ~Cgg~lrP~Vv~FGE~lp~~~~~~~~~~~~~aDlllvvGTSl~V~pa~~l~~~~~-~~~~~v~iN~~~~~~~~~~~~d~~  223 (235)
T cd01408         145 RCGGLVKPDIVFFGESLPSRFFSHMEEDKEEADLLIVIGTSLKVAPFASLPSRVP-SEVPRVLINREPVGHLGKRPFDVA  223 (235)
T ss_pred             CCCCCccCcEEECCCCCCHHHHHHHHHHHhcCCEEEEECCCCeeccHHHHHHHHh-CCCcEEEEeCCCCCCCCCCCcCEE
Confidence            8999999999999999999878888889999999999999999999999997766 6899999999999998  889999


Q ss_pred             EECcHHHHHHHH
Q 024533          159 VHAPVDKVIAGV  170 (266)
Q Consensus       159 I~g~~~evl~~L  170 (266)
                      |+|+++++|++|
T Consensus       224 ~~~~~~~~l~~~  235 (235)
T cd01408         224 LLGDCDDGVREL  235 (235)
T ss_pred             EeCCHHHHHHhC
Confidence            999999999875

Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.

>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation

Probab=100.00  E-value=5.4e-48  Score=350.06  Aligned_cols=163  Identities=34%  Similarity=0.498  Sum_probs=148.6

Q ss_pred             CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhh-----------
Q 024533            1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIG-----------   69 (266)
Q Consensus         1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~-----------   69 (266)
                      +||++|++|++|+++|++++||||||||||++||+  ++|+|+|||++..+|..|+++|.+++....+.           
T Consensus        72 ~Pn~~H~~la~L~~~g~~~~viTQNIDgLh~~aG~--~~vielHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~  149 (260)
T cd01409          72 QPNAAHRALAALEAAGRLHGLITQNVDGLHTKAGS--RNVVELHGSLHRVVCLSCGFRTPRAELQDRLEALNPGFAEQAA  149 (260)
T ss_pred             CCCHHHHHHHHHHHcCCCeeEEeeccchhHHHcCC--CCEEEEeeecCEEEeCCCcCccCHHHHHHHHhhcCcchhhhhc
Confidence            59999999999999999999999999999999997  68999999999999999999987654332110           


Q ss_pred             ---------------ccCCCCCCCCCCCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHH
Q 024533           70 ---------------MKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKS  134 (266)
Q Consensus        70 ---------------~~~~~p~Cp~~~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a  134 (266)
                                     ....+|+|+  .|||.|||+||||||++|++.+++|.+++++||++|||||||+|+|+++|+..|
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~p~C~--~Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~a  227 (260)
T cd01409         150 GQAPDGDVDLEDEQVAGFRVPECE--RCGGVLKPDVVFFGENVPRDRVVTAAARLAEADALLVLGSSLMVYSGYRFVLAA  227 (260)
T ss_pred             ccCCCcccccchhhcccCCCCCCC--CCCCEECCCEEECCCCCCHHHHHHHHHHHhcCCEEEEeCcCceecchhhHHHHH
Confidence                           012368998  899999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCEEEEECCCCCCCCCCccEEEECcHHHHH
Q 024533          135 LRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVI  167 (266)
Q Consensus       135 ~~~g~~lViIN~~~t~~d~~adl~I~g~~~evl  167 (266)
                      .++|+++|+||+++|+.|..+++.|+|+++++|
T Consensus       228 ~~~g~~viiIN~~~t~~d~~a~~~i~~~~~~~l  260 (260)
T cd01409         228 AEAGLPIAIVNIGPTRADHLATLKVDARCGEVL  260 (260)
T ss_pred             HHCCCcEEEEcCCCCCCCccccEEEeCChhhhC
Confidence            999999999999999999999999999999875

Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.

>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional

Probab=100.00  E-value=2.7e-46  Score=340.59  Aligned_cols=168  Identities=32%  Similarity=0.476  Sum_probs=149.2

Q ss_pred             CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHH-hh--ccCCCCCC
Q 024533            1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIET-IG--MKKTPRRC   77 (266)
Q Consensus         1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~-~~--~~~~~p~C   77 (266)
                      +||++|++|++|+++|++.+||||||||||+|||.  ++|+|+|||++..+|..|++.++.+..... ..  ....+|+|
T Consensus        91 ~PN~~H~aLa~Le~~g~~~~vITQNIDgLh~rAGs--~~V~ElHG~l~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~P~C  168 (271)
T PTZ00409         91 ELNPGHVALSTLESLGYLKFVVTQNVDGLHEESGN--TKVIPLHGSVFEARCCTCRKTIQLNKIMLQKTSHFMHQLPPEC  168 (271)
T ss_pred             CCCHHHHHHHHHHhcCCCcEEEeccccchHhHcCC--CcEEEeccCcCcceeCCCCCCcccCHHHHhhhhhhccCCCCCC
Confidence            59999999999999999999999999999999996  689999999999999999998875433211 10  12346899


Q ss_pred             CCCCCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC-CCcc
Q 024533           78 SDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD-KKAS  156 (266)
Q Consensus        78 p~~~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d-~~ad  156 (266)
                      +   |||.+||+||||||.+|++.+++|.+++++||++|||||||+|+|+++|+..|+++|+++|+||+++|+.+ ..+|
T Consensus       169 ~---Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~t~~~~~~~d  245 (271)
T PTZ00409        169 P---CGGIFKPNVILFGEVIPKSLLKQAEKEIDKCDLLLVVGTSSSVSTATNLCYRAHRKKKKIVEVNISKTYITNRISD  245 (271)
T ss_pred             C---CCCcccCcEEEeCCcCCHHHHHHHHHHHHcCCEEEEECCCCcccCHHHHHHHHHHcCCCEEEECCCCCCCCCcccc
Confidence            6   99999999999999999999999999999999999999999999999999999999999999999999987 5689


Q ss_pred             EEEECcHHHHHHHHHHHc
Q 024533          157 LVVHAPVDKVIAGVMRHL  174 (266)
Q Consensus       157 l~I~g~~~evl~~L~~~L  174 (266)
                      +.|+|++++++. +.+.|
T Consensus       246 ~~i~~~~~~~~~-~~~~~  262 (271)
T PTZ00409        246 YHVRAKFSELAQ-ISDIL  262 (271)
T ss_pred             EEEECcHHHHHH-HHHHh
Confidence            999999999995 44444

>PRK05333 NAD-dependent deacetylase; Provisional

Probab=100.00  E-value=2.5e-45  Score=336.59  Aligned_cols=172  Identities=29%  Similarity=0.427  Sum_probs=156.5

Q ss_pred             CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhh-----------
Q 024533            1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIG-----------   69 (266)
Q Consensus         1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~-----------   69 (266)
                      +||++|++|++|+++|++++||||||||||+|||.  ++|+|+|||++..+|.+|++.|.+++....+.           
T Consensus        82 ~Pn~~H~aLa~L~~~g~~~~viTQNIDgLh~rAG~--~~ViElHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~  159 (285)
T PRK05333         82 QPNAAHHALARLGAAGRIERLVTQNVDGLHQRAGS--RDVIELHGRLDGVRCMGCGARHPRAEIQHVLEAANPEWLALEA  159 (285)
T ss_pred             CCCHHHHHHHHHHHcCCcccEEecccchhHHHcCC--CCEEeecCCcCEEEECCCCCcCCHHHHHHHHhhcCcchhhhhc
Confidence            59999999999999999999999999999999996  78999999999999999999887653322110           


Q ss_pred             ---------------ccCCCCCCCCCCCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHH
Q 024533           70 ---------------MKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKS  134 (266)
Q Consensus        70 ---------------~~~~~p~Cp~~~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a  134 (266)
                                     ....+|+|+  .|||.|||+||||||.+|++.+.++.+++++||++||||||+.|+|++.++..+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~iP~C~--~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~~DlllvvGTSl~V~p~~~~~~~a  237 (285)
T PRK05333        160 APAPDGDADLEWAAFDHFRVPACP--ACGGILKPDVVFFGENVPRERVAAARAALDAADAVLVVGSSLMVYSGYRFCVWA  237 (285)
T ss_pred             ccCCCccccccccccccCCCCCCC--CCCCcccCCEEEcCCCCCHHHHHHHHHHHhcCCEEEEECcCceecchhhhHHHH
Confidence                           012368998  899999999999999999999999999999999999999999999999999988


Q ss_pred             hcCCCEEEEECCCCCCCCCCccEEEECcHHHHHHHHHHHccc
Q 024533          135 LRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLNL  176 (266)
Q Consensus       135 ~~~g~~lViIN~~~t~~d~~adl~I~g~~~evl~~L~~~L~~  176 (266)
                      .++|+++|+||++++..+..+++.|.|+++++|++|++.|++
T Consensus       238 ~~~g~~~i~IN~~~t~~~~~~~~~i~g~~~evL~~l~~~l~~  279 (285)
T PRK05333        238 AQQGKPIAALNLGRTRADPLLTLKVEASCAQALAALVARLGL  279 (285)
T ss_pred             HHCCCeEEEECCCCCCCCcceeEEEeCCHHHHHHHHHHHhCC
Confidence            889999999999999999999999999999999999999986

>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation

Probab=100.00  E-value=1.3e-45  Score=327.27  Aligned_cols=156  Identities=38%  Similarity=0.621  Sum_probs=143.9

Q ss_pred             CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCCCC
Q 024533            1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDV   80 (266)
Q Consensus         1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~   80 (266)
                      +||++|++|++|+++|++.+||||||||||+|||.  ++|+|+|||++..+|++|++.|+++.. ..+ .....|+|+  
T Consensus        67 ~Pn~~H~~La~L~~~~~~~~viTQNiDgLh~~AG~--~~v~elHG~l~~~~C~~C~~~~~~~~~-~~~-~~~~~p~C~--  140 (222)
T cd01413          67 QPNKAHYFLAELEKQGIIKAIITQNIDGLHQRAGS--KNVIELHGTLQTAYCVNCGSKYDLEEV-KYA-KKHEVPRCP--  140 (222)
T ss_pred             CCCHHHHHHHHHHhcCCCeEEEEeccchhhHHcCC--CcEEEccCCcCcceECCCCCCcchhHH-HHh-ccCCCCcCC--
Confidence            59999999999999999999999999999999995  789999999999999999999877643 222 124579998  


Q ss_pred             CCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCCccEEEE
Q 024533           81 KCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH  160 (266)
Q Consensus        81 ~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~  160 (266)
                      .|||.+||+||||||.+|++.++++.+++++||++|||||||+|+|+++|+..|+++|+++|+||+++++.|..++++|+
T Consensus       141 ~Cgg~lrP~Vv~fgE~lp~~~~~~a~~~~~~~Dl~lvvGTSl~V~p~~~l~~~a~~~g~~~i~iN~~~~~~~~~~~~~i~  220 (222)
T cd01413         141 KCGGIIRPDVVLFGEPLPQALLREAIEAAKEADLFIVLGSSLVVYPANLLPLIAKENGAKLVIVNADETPFDYIADLVIQ  220 (222)
T ss_pred             CCCCccCCCEEECCCCCCHHHHHHHHHHHhcCCEEEEEccCCEeccHhHHHHHHHHcCCeEEEEcCCCCCCCcceeEEEe
Confidence            89999999999999999999899999999999999999999999999999999999999999999999999999999998


Q ss_pred             Cc
Q 024533          161 AP  162 (266)
Q Consensus       161 g~  162 (266)
                      |+
T Consensus       221 ~~  222 (222)
T cd01413         221 DK  222 (222)
T ss_pred             CC
Confidence            74

Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.

>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription]

Probab=100.00  E-value=1.1e-45  Score=332.26  Aligned_cols=170  Identities=35%  Similarity=0.565  Sum_probs=156.5

Q ss_pred             CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCCCC
Q 024533            1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDV   80 (266)
Q Consensus         1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~   80 (266)
                      +||++|++|++|+++|++++||||||||||++||+  ++|+||||++...+|.+|+..+..++...... ...+|+|+  
T Consensus        76 ~Pn~~H~~la~le~~~~~~~iiTQNiD~Lhe~AGs--~~Vi~lHGsl~~~~C~~C~~~~~~~~~~~~~~-~~~~p~C~--  150 (250)
T COG0846          76 QPNKAHYALAELEDKGKLLRIITQNIDGLHERAGS--KNVIELHGSLKRVRCSKCGNQYYDEDVIKFIE-DGLIPRCP--  150 (250)
T ss_pred             CCCHHHHHHHHHhhcCCceEEEecccchHHHHcCC--CcEEEeccceeeeEeCCCcCccchhhhhhhcc-cCCCCcCc--
Confidence            69999999999999999999999999999999998  59999999999999999999887655322221 22579999  


Q ss_pred             CCCC-cccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCCccEEE
Q 024533           81 KCGS-RLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVV  159 (266)
Q Consensus        81 ~Cgg-~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I  159 (266)
                      .||+ .+||+||||||.+|.+.++.+.+.+++||++||+|||+.|+|++.+|..++++|+.+++||+++++.+..+|+.+
T Consensus       151 ~Cg~~~lrP~VV~fGE~lp~~~~~~~~~~~~~~d~liviGTSl~V~Paa~~p~~~~~~g~~~i~iN~~~~~~~~~~d~~i  230 (250)
T COG0846         151 KCGGPVLRPDVVWFGEPLPASFLDEALEALKEADLLIVIGTSLKVYPAAGLPELAKRRGAKVIEINLEPTRLDPIADEVI  230 (250)
T ss_pred             cCCCccccCCEEEeCCCCCHHHHHHHHHHhccCCEEEEECcceEEcChhhhhHHHHhcCCEEEEECCCcccCcchhHHHH
Confidence            9999 999999999999999999999999999999999999999999999998889999999999999999999999999


Q ss_pred             ECcHHHHHHHHHHHcc
Q 024533          160 HAPVDKVIAGVMRHLN  175 (266)
Q Consensus       160 ~g~~~evl~~L~~~L~  175 (266)
                      +++++++++.|++.+.
T Consensus       231 ~~~a~~~~~~l~~~~~  246 (250)
T COG0846         231 RGDAGEVLPLLLEELL  246 (250)
T ss_pred             HhhHHHHHHHHHHHhh
Confidence            9999999999988764

>PRK00481 NAD-dependent deacetylase; Provisional

Probab=100.00  E-value=5.7e-45  Score=326.79  Aligned_cols=165  Identities=39%  Similarity=0.655  Sum_probs=154.0

Q ss_pred             CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCCCC
Q 024533            1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDV   80 (266)
Q Consensus         1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~   80 (266)
                      +||++|++|++|++.|++++||||||||||++||.  ++|+|+|||++..+|++|++.|..+...     ....|+||  
T Consensus        76 ~Pn~~H~~L~~L~~~~~~~~viTqNiD~L~~~aG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~-----~~~~p~C~--  146 (242)
T PRK00481         76 KPNAAHRALAELEKLGKLVTVITQNIDGLHERAGS--KNVIELHGSLLRARCTKCGQTYDLDEYL-----KPEPPRCP--  146 (242)
T ss_pred             CCCHHHHHHHHHHhcCCCeEEEEeccchhHHHcCC--CceeeccCCcCceeeCCCCCCcChhhhc-----cCCCCCCC--
Confidence            69999999999999999999999999999999996  7999999999999999999988766433     13468898  


Q ss_pred             CCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCCccEEEE
Q 024533           81 KCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH  160 (266)
Q Consensus        81 ~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~  160 (266)
                      .|||.+||+||||||.+|++.+.++.+++++||++||||||++|+|+++|+..++++|+++|+||++++..+..+++.|.
T Consensus       147 ~Cgg~lrP~Vv~fge~~~~~~~~~a~~~~~~~dl~lviGTsl~V~p~~~l~~~~~~~~~~~i~iN~~~~~~~~~~~~~i~  226 (242)
T PRK00481        147 KCGGILRPDVVLFGEMLPELAIDEAYEALEEADLFIVIGTSLVVYPAAGLPYEAREHGAKTVEINLEPTPLDSLFDLVIH  226 (242)
T ss_pred             CCCCccCCCeEECCCCCCHHHHHHHHHHHhcCCEEEEECCCceEcCHhHHHHHHHHCCCeEEEECCCCCCCCCccCEEEE
Confidence            89999999999999999998899999999999999999999999999999988888999999999999999999999999


Q ss_pred             CcHHHHHHHHHHHc
Q 024533          161 APVDKVIAGVMRHL  174 (266)
Q Consensus       161 g~~~evl~~L~~~L  174 (266)
                      |+++++|++|+++|
T Consensus       227 ~~~~~~l~~l~~~~  240 (242)
T PRK00481        227 GKAGEVVPELVEEL  240 (242)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999999876

>PTZ00408 NAD-dependent deacetylase; Provisional

Probab=100.00  E-value=2.3e-44  Score=323.29  Aligned_cols=162  Identities=22%  Similarity=0.381  Sum_probs=144.5

Q ss_pred             CCCHHHHHHHHHHHc--CCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCC
Q 024533            1 MPSITHMALVELEKA--GILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCS   78 (266)
Q Consensus         1 ~Pn~~H~aLa~L~~~--g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp   78 (266)
                      +||.+|++|++|++.  |++++||||||||||+|||.  ++|+|+|||++..+|++|++.|..+....     ...|+|+
T Consensus        69 ~Pn~~H~~L~~Le~~~~~~~~~iiTQNiDgLh~~AG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~~-----~~~p~C~  141 (242)
T PTZ00408         69 KPNKAHFALAKLEREYRGGKVVVVTQNVDNLHERAGS--THVLHMHGELLKVRCTATGHVFDWTEDVV-----HGSSRCK  141 (242)
T ss_pred             CCCHHHHHHHHHHHhhcCCcEEEEeecccchhhHcCC--CcEEEecCccceEEECCCCcccCchhhhh-----cCCCccc
Confidence            599999999999986  88899999999999999996  68999999999999999999886654321     2368998


Q ss_pred             CCCCC--CcccccEEEcCC-CCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCCc
Q 024533           79 DVKCG--SRLKDTVLDWED-ALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKA  155 (266)
Q Consensus        79 ~~~Cg--g~lrP~Vv~FgE-~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~a  155 (266)
                        .||  |.+||+|||||| .+|.+.++   +++.+||++|||||||+|+|+++|+..|+++|+++++||++++..+..+
T Consensus       142 --~Cg~~g~lrP~vV~FGE~~~~~~~~~---~~~~~~DlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~~~~~~~~  216 (242)
T PTZ00408        142 --CCGCVGTLRPHIVWFGEMPLYMDEIE---SVMSKTDLFVAVGTSGNVYPAAGFVGRAQFYGATTLELNLEEGTNYSQF  216 (242)
T ss_pred             --cCCCCCCCCCCEEEcCCCCCcHHHHH---HHHHhCCEEEEEccCCccccHHHHHHHHHHcCCeEEEECCCCCCCCccC
Confidence              676  999999999999 77755444   4588999999999999999999999999999999999999999988888


Q ss_pred             cEEEECcHHHHHHHHHHHc
Q 024533          156 SLVVHAPVDKVIAGVMRHL  174 (266)
Q Consensus       156 dl~I~g~~~evl~~L~~~L  174 (266)
                      ++.|.|+++++|++|++.+
T Consensus       217 ~~~i~g~~~~~l~~l~~~~  235 (242)
T PTZ00408        217 DESIYGKASVIVPAWVDRV  235 (242)
T ss_pred             CEEEECCHHHHHHHHHHHH
Confidence            9999999999999998865

>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E

Probab=100.00  E-value=2.1e-44  Score=319.28  Aligned_cols=162  Identities=34%  Similarity=0.538  Sum_probs=149.8

Q ss_pred             CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCCCC
Q 024533            1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDV   80 (266)
Q Consensus         1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~   80 (266)
                      +||.+|++|++|++++++++||||||||||++||+  ++|+|+|||++..+|..|++.+..+...    ....+|+|+  
T Consensus        63 ~Pn~~H~~L~~L~~~~~~~~viTqNiDgL~~~aG~--~~v~e~HG~~~~~~C~~C~~~~~~~~~~----~~~~~p~C~--  134 (224)
T cd01412          63 QPNPAHLALAELERRLPNVLLITQNVDGLHERAGS--RNVIELHGSLFRVRCSSCGYVGENNEEI----PEEELPRCP--  134 (224)
T ss_pred             CCCHHHHHHHHHHhcCCCeEEEEccchHhhHHhCC--CceEeeCCCcCccccCCCCCCCCcchhh----hccCCCCCC--
Confidence            69999999999999998999999999999999998  8999999999999999999988665221    124579999  


Q ss_pred             CCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCCccEEEE
Q 024533           81 KCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH  160 (266)
Q Consensus        81 ~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~  160 (266)
                      .|||.+||+||||||.+|. .++.+.++++++|++|||||||.|.|+++|+..++.+|+++|+||++++..+..+++.|+
T Consensus       135 ~Cgg~lrp~Vv~fge~~p~-~~~~~~~~~~~~dl~lvlGTsl~v~p~~~l~~~~~~~~~~~i~iN~~~~~~~~~~~~~i~  213 (224)
T cd01412         135 KCGGLLRPGVVWFGESLPL-ALLEAVEALAKADLFLVIGTSGVVYPAAGLPEEAKERGARVIEINPEPTPLSPIADFAFR  213 (224)
T ss_pred             CCCCccCCceEECCCCCHH-HHHHHHHHHHcCCEEEEECcCccchhHHHHHHHHHHCCCeEEEECCCCCCCCCcCCEEEE
Confidence            8999999999999999998 789999999999999999999999999999988888999999999999999999999999


Q ss_pred             CcHHHHHHHHH
Q 024533          161 APVDKVIAGVM  171 (266)
Q Consensus       161 g~~~evl~~L~  171 (266)
                      |+++++|++|+
T Consensus       214 g~~~~~l~~l~  224 (224)
T cd01412         214 GKAGEVLPALL  224 (224)
T ss_pred             CCHHHHHHHhC
Confidence            99999999873

coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.

>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose

Probab=100.00  E-value=7.6e-44  Score=314.85  Aligned_cols=156  Identities=46%  Similarity=0.737  Sum_probs=143.3

Q ss_pred             CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCCCC
Q 024533            1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDV   80 (266)
Q Consensus         1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~   80 (266)
                      +||++|++|++|+++|++++||||||||||++||++  +|+|+|||++..+|+.|++.++.+.....+ ....+|+||  
T Consensus        63 ~Pn~~H~~L~~L~~~~~~~~viTQNiDgL~~~aG~~--~v~elHG~~~~~~C~~C~~~~~~~~~~~~~-~~~~~p~C~--  137 (218)
T cd01407          63 QPNPAHRALAELERKGKLKRVITQNVDGLHQRAGSP--KVIELHGSLFRVRCTKCGKEYPRDELQADI-DREEVPRCP--  137 (218)
T ss_pred             CCCHHHHHHHHHHhcCCCeeEEEeccchhHHHcCCC--CEEECcCCcCcceeCCCcCCCcHHHHhHhh-ccCCCCcCC--
Confidence            699999999999999999999999999999999985  999999999999999999988766433222 234579999  


Q ss_pred             CCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCCccEEEE
Q 024533           81 KCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH  160 (266)
Q Consensus        81 ~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~  160 (266)
                      .|||.|||+||||||.+|+. +.++.+++.++|++||||||+.|+|+++++..+.++|+++|+||+++++.+..+|+.|+
T Consensus       138 ~Cg~~lrP~Vv~fgE~~p~~-~~~a~~~~~~~Dl~lvlGTSl~V~p~~~l~~~~~~~~~~~i~iN~~~~~~~~~~d~~~~  216 (218)
T cd01407         138 KCGGLLRPDVVFFGESLPEE-LDEAAEALAKADLLLVIGTSLQVYPAAGLPLYAPERGAPVVIINLEPTPADRKADLVIL  216 (218)
T ss_pred             CCCCccCCCeEECCCCCcHH-HHHHHHHHhcCCEEEEeCCCcccccHHHHHHHHHHCCCeEEEECCCCCCCCccceEEEe
Confidence            89999999999999999998 99999999999999999999999999999998888999999999999999999999998


Q ss_pred             Cc
Q 024533          161 AP  162 (266)
Q Consensus       161 g~  162 (266)
                      |+
T Consensus       217 ~~  218 (218)
T cd01407         217 GD  218 (218)
T ss_pred             CC
Confidence            85

Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.

>PTZ00410 NAD-dependent SIR2; Provisional

Probab=100.00  E-value=9.1e-44  Score=332.31  Aligned_cols=171  Identities=24%  Similarity=0.336  Sum_probs=150.0

Q ss_pred             CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCCCC
Q 024533            1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDV   80 (266)
Q Consensus         1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~   80 (266)
                      +||++|++|+.|+++|++.+||||||||||++||++.++|+|+|||++..+|..|++.|+.+.....+. ...+|+|+  
T Consensus        99 ~Pn~aH~aLa~Le~~G~l~~vITQNIDgLh~rAG~~~~~ViElHGsl~~~~C~~C~~~~~~~~~~~~~~-~~~vP~C~--  175 (349)
T PTZ00410         99 QPTAVHHFIRLLADEGRLLRCCTQNIDGLERAAGVPPSLLVEAHGSFSAASCIECHTPYDIEQAYLEAR-SGKVPHCS--  175 (349)
T ss_pred             CCCHHHHHHHHHHhcCCcceEEecchhhhHhhcCCCcccEEEeccCCCeeEeCCCCCCcchhHHHHHhh-cCCCCCCC--
Confidence            699999999999999999999999999999999998889999999999999999999887765443332 34579998  


Q ss_pred             CCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC--------
Q 024533           81 KCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--------  152 (266)
Q Consensus        81 ~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d--------  152 (266)
                      .|||.+||+||||||.+|+..++ +.+++++||++|||||||+|+|++.|+..+. .++++|+||++++...        
T Consensus       176 ~CgG~lRPdVVlFGE~lp~~~~~-a~~~~~~aDllLVIGTSL~V~Paa~l~~~a~-~~~pvviIN~e~~~~~~~r~~~~~  253 (349)
T PTZ00410        176 TCGGIVKPDVVFFGENLPDAFFN-VHHDIPEAELLLIIGTSLQVHPFALLACVVP-KDVPRVLFNLERVGGLMFRFPTDP  253 (349)
T ss_pred             CCCCccCCcEEecCCcCCHHHHH-HHHHHHhCCEEEEECcCCcccCHHHHHHHHh-cCCCEEEECccccCCceeeccCCc
Confidence            89999999999999999988777 8899999999999999999999999997766 6899999999976421        


Q ss_pred             -----------------------------------------------CCccEEEECcHHHHHHHHHHHccc
Q 024533          153 -----------------------------------------------KKASLVVHAPVDKVIAGVMRHLNL  176 (266)
Q Consensus       153 -----------------------------------------------~~adl~I~g~~~evl~~L~~~L~~  176 (266)
                                                                     ...|+.+.|+||+-...|++.|||
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~g~~~~~~~~~~~~lg~  324 (349)
T PTZ00410        254 LTTFHADSVAKEGRSSSSSSRSSSDSSTSSSSDGYGQFGDYEADPGGVCRDIFFPGDCQESVRRLAEALGL  324 (349)
T ss_pred             cccchhhhhhhcccCccccccccccccccccccccccccccccCccccccceeecccchHHHHHHHHHhCc
Confidence                                                           134677888888888888888887

>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation

Probab=100.00  E-value=5.4e-43  Score=311.22  Aligned_cols=152  Identities=31%  Similarity=0.503  Sum_probs=139.8

Q ss_pred             CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCCCC
Q 024533            1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDV   80 (266)
Q Consensus         1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~   80 (266)
                      +||.+|++|++|++.| +++||||||||||++||.  ++|+|+|||++..+|++|++.|..+..       ...|+|+  
T Consensus        73 ~Pn~~H~~La~L~~~~-~~~viTQNvD~Lh~~aG~--~~v~elHG~~~~~~C~~C~~~~~~~~~-------~~~p~C~--  140 (225)
T cd01411          73 KPNIIHQKMAELEKMG-LKAVITQNIDGLHQKAGS--KNVVEFHGSLYRIYCTVCGKTVDWEEY-------LKSPYHA--  140 (225)
T ss_pred             CCCHHHHHHHHHHHcC-CcEEEEeccchhhhhcCC--CcEEEeCCCcCeeEeCCCCCccchhhc-------CCCCCCC--
Confidence            6999999999999987 899999999999999995  789999999999999999988865432       1368998  


Q ss_pred             CCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCCccEEEE
Q 024533           81 KCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH  160 (266)
Q Consensus        81 ~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~  160 (266)
                      .|||.|||+||||||.+|.+.++++.++++++|++|+||||+.|+|+++|+..+. +|+++|+||+++++.+..+++.|+
T Consensus       141 ~Cgg~lrP~vv~fge~~~~~~~~~~~~~~~~~DlllviGTSl~v~p~~~l~~~~~-~~~~~i~iN~~~~~~~~~~~~~~~  219 (225)
T cd01411         141 KCGGVIRPDIVLYEEMLNESVIEEAIQAIEKADLLVIVGTSFVVYPFAGLIDYRQ-AGANLIAINKEPTQLDSPATLVIK  219 (225)
T ss_pred             CCCCEeCCCEEEcCCCCCHHHHHHHHHHHhcCCEEEEECcCCeehhHHHHHHHHh-CCCeEEEECCCCCCCCcchhehhc
Confidence            8999999999999999999889999999999999999999999999999987654 799999999999999999999999


Q ss_pred             CcHHHH
Q 024533          161 APVDKV  166 (266)
Q Consensus       161 g~~~ev  166 (266)
                      | ++++
T Consensus       220 ~-~~~~  224 (225)
T cd01411         220 D-AVKV  224 (225)
T ss_pred             c-hhhh
Confidence            9 8875

Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.

>cd00296 SIR2 SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose

Probab=100.00  E-value=2.4e-39  Score=285.06  Aligned_cols=156  Identities=46%  Similarity=0.711  Sum_probs=143.6

Q ss_pred             CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCCCC
Q 024533            1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDV   80 (266)
Q Consensus         1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~   80 (266)
                      +||++|++|++|+++|++++||||||||||++||++.++|+|+||++...+|..|++.+..+.....    ...|+|+  
T Consensus        65 ~P~~~H~~l~~l~~~~~~~~iiTqNiD~L~~~ag~~~~~v~~lHG~~~~~~C~~C~~~~~~~~~~~~----~~~p~C~--  138 (222)
T cd00296          65 KPNPAHRALAELERKGKLKRIITQNVDGLHERAGSRRNRVIELHGSLDRVRCTSCGKEYPRDEVLER----EKPPRCP--  138 (222)
T ss_pred             CCCHHHHHHHHHHHcCCCceEEecChHHHHHHhCCCcCcEEEecCCCCccEECCCCCCcchhhhhhc----cCCCCCC--
Confidence            6999999999999999999999999999999999988899999999999999999988876654322    4579999  


Q ss_pred             CCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC--CCccEE
Q 024533           81 KCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLV  158 (266)
Q Consensus        81 ~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d--~~adl~  158 (266)
                      .|||.+||+|++|||.+|+..+.++.+++.++|++|+|||||+|.|+..|+..+.++|+++++||++++..+  ..+++.
T Consensus       139 ~C~~~l~p~v~~fge~~~~~~~~~~~~~~~~~d~llviGtSl~v~~~~~l~~~~~~~~~~~~~in~~~~~~~~~~~~~~~  218 (222)
T cd00296         139 KCGGLLRPDVVDFGEALPKEWFDRALEALLEADLVLVIGTSLTVYPAARLLLRAPERGAPVVIINREPTPADALKKADLV  218 (222)
T ss_pred             CCCCcccCceEECCCCCCHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHHHCCCcEEEECCCCCCCCCCCcceEE
Confidence            899999999999999999887888999999999999999999999999999888889999999999999999  778888


Q ss_pred             EECc
Q 024533          159 VHAP  162 (266)
Q Consensus       159 I~g~  162 (266)
                      +.|+
T Consensus       219 ~~~~  222 (222)
T cd00296         219 ILGD  222 (222)
T ss_pred             EeCC
Confidence            8764

Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer. Also included in this superfamily is a group of uncharacterized Sir2-like proteins which lack certain key catalytic

>KOG2683 consensus Sirtuin 4 and related class II sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]

Probab=100.00  E-value=2.8e-39  Score=284.03  Aligned_cols=165  Identities=30%  Similarity=0.436  Sum_probs=150.1

Q ss_pred             CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhh-----------
Q 024533            1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIG-----------   69 (266)
Q Consensus         1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~-----------   69 (266)
                      +||++|+||+.||+.|+..++||||||+||.|||+  +++.||||+...+.|..|+...+++...+.+.           
T Consensus       111 qPn~~H~ALs~wE~~~r~~wliTQNVD~LH~kAGS--~~~tElHG~~~~VkCl~C~y~~~R~~~Qdrl~~~NP~fke~~~  188 (305)
T KOG2683|consen  111 QPNPAHYALSKWEKAGRFQWLITQNVDRLHTKAGS--RMVTELHGSAYQVKCLSCGYIEPRQTFQDRLKYLNPGFKEAIV  188 (305)
T ss_pred             CCCchhHHHHHHhhcCceEEEeeccchhhhhhccc--cceeeeccceEEEEecccCcccchHHHHHHHHhcCcchhhhcc
Confidence            59999999999999999999999999999999997  78999999999999999999877653221110           


Q ss_pred             ------------------ccCCCCCCCCCCCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccch
Q 024533           70 ------------------MKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLP  131 (266)
Q Consensus        70 ------------------~~~~~p~Cp~~~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~  131 (266)
                                        ..-.+|.|.  +|||.|||+|+||||++|.+..+.+.+.+.+||-+||+||||.|+...+++
T Consensus       189 ~~~~~~pDgDv~lpl~~e~gF~IPeC~--~CgG~lKpdV~fFGdnvn~dkv~~~~~~v~e~dg~LvlGsSL~v~Sg~r~i  266 (305)
T KOG2683|consen  189 SPGHQRPDGDVELPLEFEEGFQIPECE--KCGGLLKPDVTFFGDNVNKDKVTFCMEKVKECDGFLVLGSSLMVLSGFRFI  266 (305)
T ss_pred             CccccCCCCCeecchhhhhcccCCccc--ccCCccCCceEEecCCCChHHHHHHHHHHhccCceEEechhHHHHHHHHHH
Confidence                              012369998  999999999999999999988888999999999999999999999999999


Q ss_pred             HHHhcCCCEEEEECCCCCCCCCCccEEEECcHHHHHHH
Q 024533          132 LKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAG  169 (266)
Q Consensus       132 ~~a~~~g~~lViIN~~~t~~d~~adl~I~g~~~evl~~  169 (266)
                      ..|...+.++.|||.++|..|..+++.|...|.|+|++
T Consensus       267 ~~a~~~k~pi~IvNIGpTRaD~~a~lKl~~r~gdvl~~  304 (305)
T KOG2683|consen  267 RHAHEKKKPIAIVNIGPTRADDMATLKLNYRIGEVLKE  304 (305)
T ss_pred             HHHHhhcCcEEEEecCCcchhheeeeeecchHhhhhhc
Confidence            99999999999999999999999999999999999975

>PF02146 SIR2: Sir2 family; InterPro: IPR003000 These sequences represent the Sirtuin (Sir2-related) family of NAD+-dependent deacetylases

Probab=100.00  E-value=1.8e-39  Score=278.28  Aligned_cols=120  Identities=47%  Similarity=0.795  Sum_probs=101.8

Q ss_pred             CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCCCC
Q 024533            1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDV   80 (266)
Q Consensus         1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~   80 (266)
                      +||.+|++|++|++.|++++||||||||||+|||++  +|+|||||++..+|..|+++|..+.....+. ....|+|+  
T Consensus        59 ~Pn~~H~~La~L~~~g~~~~viTQNIDgLh~~AG~~--~vielHG~l~~~~C~~C~~~~~~~~~~~~~~-~~~~~~C~--  133 (178)
T PF02146_consen   59 EPNPGHRALAELEKKGKLKRVITQNIDGLHQKAGSP--KVIELHGSLFRLRCSKCGKEYDREDIVDSID-EEEPPRCP--  133 (178)
T ss_dssp             ---HHHHHHHHHHHTTSEEEEEES-SSSHHHHTTES--CEEETTEEEEEEEETTTSBEEEGHHHHHHHH-TTSSCBCT--
T ss_pred             CCChhHHHHHHHHHhhhhccceecccchhhhcccch--hhHHHHhhhceeeecCCCccccchhhccccc-cccccccc--
Confidence            599999999999999999999999999999999995  9999999999999999999998776554443 34568998  


Q ss_pred             CCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhh
Q 024533           81 KCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITP  126 (266)
Q Consensus        81 ~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~P  126 (266)
                      .|||.|||+||||||.+| +.+..+.+++++|||+|||||||+|+|
T Consensus       134 ~C~~~lrp~vv~fgE~~~-~~~~~~~~~~~~~Dl~lviGTSl~V~P  178 (178)
T PF02146_consen  134 KCGGLLRPDVVLFGESLP-EEIEEAIEDAEEADLLLVIGTSLQVYP  178 (178)
T ss_dssp             TTSCBEEEEE--BTSB-S-HHHHHHHHHHHH-SEEEEESS-STSTT
T ss_pred             ccCccCCCCeeecCCCCH-HHHHHHHHHHHcCCEEEEEccCcEEEC
Confidence            999999999999999999 778999999999999999999999998

This family of enzymes is broadly conserved from bacteria to humans. In yeast, Sir2 proteins form complexes with other proteins to silence chromatin by accessing histones and deacetylating them. Sir2 proteins have been proposed to play a role in silencing, chromosome stability and ageing []. The bacterial enzyme CobB, an homologue of Sir2, is a phosphoribosyltransferase []. An in vitro ADP ribosyltransferase activity has also been associated with human members of this family []. Sir2-like enzymes employ NAD+ as a cosubstrate in deacetylation reactions [] and catalyse a reaction in which the cleavage of NAD(+)and histone and/or protein deacetylation are coupled to the formation of O-acetyl-ADP-ribose, a novel metabolite. The dependence of the reaction on both NAD(+) and the generation of this potential second messenger offers new clues to understanding the function and regulation of nuclear, cytoplasmic and mitochondrial Sir2-like enzymes []. Silent Information Regulator protein of Saccharomyces cerevisiae (Sir2) is one of several factors critical for silencing at least three loci. Among them, it is unique because it silences the rDNA as well as the mating type loci and telomeres []. Sir2 interacts in a complex with itself and with Sir3 and Sir4, two proteins that are able to interact with nucleosomes. In addition Sir2 also interacts with ubiquitination factors and/or complexes []. Homologues of Sir2 share a core domain including the GAG and NID motifs and a putative C4 Zinc finger. The regions containing these three conserved motifs are individually essential for Sir2 silencing function, as are the four cysteins []. In addition, the conserved residues HG next to the putative Zn finger have been shown to be essential for the ADP ribosyltransferase activity []. ; GO: 0008270 zinc ion binding, 0070403 NAD+ binding, 0006476 protein deacetylation; PDB: 1S5P_A 3PKI_E 3PKJ_F 3K35_A 1ICI_A 1M2K_A 1M2G_A 1M2N_B 1M2H_A 1M2J_A ....

>KOG2682 consensus NAD-dependent histone deacetylases and class I sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]

Probab=100.00  E-value=1.4e-38  Score=279.96  Aligned_cols=173  Identities=25%  Similarity=0.389  Sum_probs=157.6

Q ss_pred             CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCC-CCcccchhhHHHHhhccCCCCCCCC
Q 024533            1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPS-CGVEYMRDFEIETIGMKKTPRRCSD   79 (266)
Q Consensus         1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~-C~~~~~~~~~~~~~~~~~~~p~Cp~   79 (266)
                      +||.+||+|+.|.++|.+.++||||||+|++.||++.+.++|.||++...+|.. |++.|+.++....+. .+.+|+|+ 
T Consensus       104 kPt~~HYflrLl~DK~lL~r~YTQNIDtLER~aGv~d~~lvEAHGtFa~s~Ci~~C~~~yp~e~~ka~i~-~~~vpkC~-  181 (314)
T KOG2682|consen  104 KPTITHYFLRLLHDKGLLLRCYTQNIDTLERIAGVPDEDLVEAHGTFATSHCISSCRHEYPLEWMKAKIM-SEVVPKCE-  181 (314)
T ss_pred             CchhHHHHHHHHccccHHHHHHhccchHHHHhcCCCHHHHHHhccceeeeeehhhhcCcCCHHHHHHHHH-hccCCCCc-
Confidence            699999999999999999999999999999999999999999999999999995 999999888766553 35688998 


Q ss_pred             CCCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCC----CCCc
Q 024533           80 VKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPK----DKKA  155 (266)
Q Consensus        80 ~~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~----d~~a  155 (266)
                       .|+|.+||+||||||.+|..+++..+.....+||+|||||||+|+|+++||+.+ ....+.+.||++...-    .+..
T Consensus       182 -vC~~lVKP~IVFfGE~LP~rF~e~~~~D~~~~dl~lV~GTSL~V~PFAsLpe~v-p~~v~RlLiNre~~Gp~~~~~r~r  259 (314)
T KOG2682|consen  182 -VCQGLVKPDIVFFGESLPARFFECMQSDFLKVDLLLVMGTSLQVQPFASLPEKV-PLSVPRLLINREKAGPFLGMIRYR  259 (314)
T ss_pred             -hhhccccccEEEecCCccHHHHHHHhhcccccceEEEeccceeeeecccchhhh-hhcCceeEecccccCccccCcccc
Confidence             899999999999999999998888888889999999999999999999999764 5678899999998872    2457


Q ss_pred             cEEEECcHHHHHHHHHHHcccC
Q 024533          156 SLVVHAPVDKVIAGVMRHLNLW  177 (266)
Q Consensus       156 dl~I~g~~~evl~~L~~~L~~~  177 (266)
                      |+.+.|+||+....|++.|||.
T Consensus       260 Dv~~lgd~d~~~eaLvelLGW~  281 (314)
T KOG2682|consen  260 DVAWLGDCDQGVEALVELLGWK  281 (314)
T ss_pred             cchhhccHHHHHHHHHHHhCcH
Confidence            8999999999999999999983

>KOG2684 consensus Sirtuin 5 and related class III sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]

Probab=100.00  E-value=1.5e-35  Score=277.48  Aligned_cols=180  Identities=22%  Similarity=0.330  Sum_probs=157.7

Q ss_pred             CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCCCC
Q 024533            1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDV   80 (266)
Q Consensus         1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~   80 (266)
                      .|++.|.+|+.|+++|++.++|||||||||++||+...+++++|||+....|.+|+..++.+...+.+. ....|.||  
T Consensus       155 ~ps~~H~Fi~~L~~~gkLlR~YTQNID~LE~~aGl~~~~lVq~HGSf~t~sCt~C~~k~~~~~~~~~~~-~~~vp~CP--  231 (412)
T KOG2684|consen  155 NPSAFHEFIKLLEKKGKLLRNYTQNIDGLERKAGLSTNKLVQCHGSFKTASCTKCGYKKPFEELREDIR-NQEVPVCP--  231 (412)
T ss_pred             CCchHHHHHHHHHhcCceeEEeecccchhhhccCCCcCceEEeccccceeeecccccccChHHHHHHHh-cCcCccCc--
Confidence            489999999999999999999999999999999998788999999999999999999888774444443 45689998  


Q ss_pred             CCCC------------------cccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEE
Q 024533           81 KCGS------------------RLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIV  142 (266)
Q Consensus        81 ~Cgg------------------~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lV  142 (266)
                      .|.+                  .|||+||||||.+|+.+..........+||+|||||||.|+|++.++.. ..+..+.|
T Consensus       232 ~C~~~~~~r~~~g~r~~~~~vgvlrP~IvffgE~lP~~~~~~~~~d~d~~DllIviGTSLKV~pV~~iv~~-~~~~vpqI  310 (412)
T KOG2684|consen  232 DCEGKNEKRRGAGKRCESEGVGVLRPDIVFFGENLPDSFHIGVGADLDECDLLIVIGTSLKVRPVAEIVKS-FPAKVPQI  310 (412)
T ss_pred             ccccccccccCccccccccCccccccceEEecCCCChHHHhhhhccccccceEEEeCCccccccHHHHHhh-hcccCcEE
Confidence            8855                  8999999999999998877767777788999999999999999999864 45667999


Q ss_pred             EECCCCCCCCCCccEEEECcHHHHHHHHHHHcccCCCCccccc
Q 024533          143 IVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLNLWIPPYVRVD  185 (266)
Q Consensus       143 iIN~~~t~~d~~adl~I~g~~~evl~~L~~~L~~~ip~~~~~~  185 (266)
                      .||.++.+.. .+|+-+.++||++...+.+.+||..|.-...+
T Consensus       311 liNr~~v~h~-efd~~ll~~CD~v~~~l~~~~g~~~~~~~~~~  352 (412)
T KOG2684|consen  311 LINRDPVPHA-EFDVELLGDCDDVIRLLCQKCGWLKPLLSLND  352 (412)
T ss_pred             EecCcccccc-ccChhhccchHHHHHHHHhhccccchHhhhhh
Confidence            9999977764 46888999999999999999999998776655

>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor

Probab=96.81  E-value=0.0043  Score=50.39  Aligned_cols=67  Identities=18%  Similarity=0.285  Sum_probs=49.3

Q ss_pred             hHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC--CccEEEECcHHHHHHHH
Q 024533          103 NPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGV  170 (266)
Q Consensus       103 ~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~--~adl~I~g~~~evl~~L  170 (266)
                      ..+.+.+++||++|++|+++.-........ ......++|.||.++....+  ..++.|.|++..+|.+|
T Consensus        69 ~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~-~~~~~~~~I~I~~d~~~~~~~~~~~~~i~~d~~~~l~~L  137 (137)
T PF00205_consen   69 PAANEALEQADLVLAIGTRLSDFNTYGFSP-AFNPDAKIIQIDPDPAEIGKNYPPDVAIVGDIKAFLRAL  137 (137)
T ss_dssp             HHHHHHHHHSSEEEEESSSSSTTTTTTTTG-CSTTTSEEEEEESSGGGTTSSSEESEEEESHHHHHHHHH
T ss_pred             HHHHHHhcCCCEEEEECCCCcccccccccc-ccCCCCEEEEEECCHHHhCCCCCCCEEEEECHHHHhhCC
Confidence            456778899999999999986544433211 12333499999999987653  35899999999998875

It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....

>cd01406 SIR2-like Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation

Probab=96.75  E-value=0.0016  Score=58.19  Aligned_cols=33  Identities=27%  Similarity=0.200  Sum_probs=28.7

Q ss_pred             CCCHHHHHHHHHHHcCC-ccEEEeccccchhhhc
Q 024533            1 MPSITHMALVELEKAGI-LKFVISQNVDSLHLRS   33 (266)
Q Consensus         1 ~Pn~~H~aLa~L~~~g~-l~~viTQNIDgLh~kA   33 (266)
                      +|+..|.+|++|...+. ...+||+|.|.|.++|
T Consensus        79 ~~~~~h~~i~~l~~~~~~~~~iiTTNyD~llE~a  112 (242)
T cd01406          79 EPSPLHELLLRLFINNEGDVIIITTNYDRLLETA  112 (242)
T ss_pred             CCCHHHHHHHhchhccCCceEEEEcchHHHHHHH
Confidence            48999999999987653 5689999999999986

>PRK07979 acetolactate synthase 3 catalytic subunit; Validated

Probab=95.14  E-value=0.049  Score=54.71  Aligned_cols=70  Identities=17%  Similarity=0.284  Sum_probs=52.7

Q ss_pred             HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC--CccEEEECcHHHHHHHHHHHcc
Q 024533          104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~--~adl~I~g~~~evl~~L~~~L~  175 (266)
                      .+.+.+.+||++|++||++..+.......  ...++++|.||.++....+  ..++.|.||+..+|..|.+.|.
T Consensus       265 ~~~~~l~~aDlvl~vG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~  336 (574)
T PRK07979        265 EANMTMHNADVIFAVGVRFDDRTTNNLAK--YCPNATVLHIDIDPTSISKTVTADIPIVGDARQVLEQMLELLS  336 (574)
T ss_pred             HHHHHHHhCCEEEEeCCCCcccccCChhh--cCCCCeEEEEECCHHHhCCcccCCeEEecCHHHHHHHHHHhhh
Confidence            45667889999999999987665433211  1235689999998876543  4689999999999999988764

>PRK08322 acetolactate synthase; Reviewed

Probab=95.09  E-value=0.058  Score=53.66  Aligned_cols=68  Identities=15%  Similarity=0.213  Sum_probs=52.1

Q ss_pred             HHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHHHHHHcc
Q 024533          105 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       105 a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~L~~~L~  175 (266)
                      +...+++||++|++|+++.-.+.....   ...+.++|.||.++...+  ...++.|.||+..+|++|.+.+.
T Consensus       256 ~~~~l~~aDlil~lG~~l~~~~~~~~~---~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~  325 (547)
T PRK08322        256 VHCAIEHADLIINVGHDVIEKPPFFMN---PNGDKKVIHINFLPAEVDPVYFPQVEVVGDIANSLWQLKERLA  325 (547)
T ss_pred             HHHHHHhCCEEEEECCCCccccccccC---CCCCCeEEEEeCCHHHcCCCcCCCeEEecCHHHHHHHHHHhcc
Confidence            456788999999999998765543331   234578999999877643  34689999999999999988764

>PRK07524 hypothetical protein; Provisional

Probab=95.05  E-value=0.038  Score=54.89  Aligned_cols=74  Identities=16%  Similarity=0.136  Sum_probs=51.6

Q ss_pred             hHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHHHHHHccc
Q 024533          103 NPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLNL  176 (266)
Q Consensus       103 ~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~L~~~L~~  176 (266)
                      ..+.+.+++||++|++|+++........-......++++|.||.++....  ...++.|.||+.++|++|.+.+..
T Consensus       255 ~~~~~~~~~aDlvl~vG~~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~~  330 (535)
T PRK07524        255 PAVRALIAEADVVLAVGTELGETDYDVYFDGGFPLPGELIRIDIDPDQLARNYPPALALVGDARAALEALLARLPG  330 (535)
T ss_pred             HHHHHHHHhCCEEEEeCCCcCccccccccccccCCCCCEEEEECCHHHhCCCcCCCceEecCHHHHHHHHHHhccc
Confidence            34666788999999999998544321100001123567999998876543  246899999999999999988753

>PRK08979 acetolactate synthase 3 catalytic subunit; Validated

Probab=95.05  E-value=0.051  Score=54.56  Aligned_cols=71  Identities=15%  Similarity=0.273  Sum_probs=53.0

Q ss_pred             hHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHHHHHHcc
Q 024533          103 NPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       103 ~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~L~~~L~  175 (266)
                      ..+.+.+.+||++|+||+++.-........  ...+.++|.||.++....  ...++.|.||+.++|+.|++.|.
T Consensus       264 ~~~~~~~~~aD~vl~vG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~  336 (572)
T PRK08979        264 YEANMAMHNADLIFGIGVRFDDRTTNNLEK--YCPNATILHIDIDPSSISKTVRVDIPIVGSADKVLDSMLALLD  336 (572)
T ss_pred             HHHHHHHHhCCEEEEEcCCCCccccCchhh--cCCCCeEEEEECCHHHhCCccCCceEEecCHHHHHHHHHHhhh
Confidence            345667889999999999987655433211  224568999999877643  24689999999999999988775

>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed

Probab=95.01  E-value=0.053  Score=55.03  Aligned_cols=70  Identities=11%  Similarity=0.224  Sum_probs=52.1

Q ss_pred             HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHHHHHHcc
Q 024533          104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~L~~~L~  175 (266)
                      .+.+.+.+||++|+|||++.......+..  ...+.++|.||.++....  ...++.|.||+..+|++|++.+.
T Consensus       283 ~~~~~l~~aDlvL~vG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~ig~~~~~~~~i~~D~~~~l~~L~~~l~  354 (616)
T PRK07418        283 YANFAVTECDLLIAVGARFDDRVTGKLDE--FASRAKVIHIDIDPAEVGKNRRPDVPIVGDVRKVLVKLLERSL  354 (616)
T ss_pred             HHHHHHHhCCEEEEEcCCCCccccCChhh--cCCCCeEEEEeCCHHHhCCccCCCeEEecCHHHHHHHHHHhhh
Confidence            45667889999999999986544332221  234578999999876533  34689999999999999988774

>CHL00099 ilvB acetohydroxyacid synthase large subunit

Probab=95.00  E-value=0.072  Score=53.72  Aligned_cols=69  Identities=13%  Similarity=0.272  Sum_probs=51.3

Q ss_pred             HHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCC--CCCccEEEECcHHHHHHHHHHHcc
Q 024533          105 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPK--DKKASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       105 a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~--d~~adl~I~g~~~evl~~L~~~L~  175 (266)
                      +...+.+||++|++|+++.-........  ...+.++|.||.++...  ....++.|.+|+.++|++|.+.|.
T Consensus       277 ~~~~l~~aDlvL~lG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~  347 (585)
T CHL00099        277 ANFAVSECDLLIALGARFDDRVTGKLDE--FACNAQVIHIDIDPAEIGKNRIPQVAIVGDVKKVLQELLELLK  347 (585)
T ss_pred             HHHHHHhCCEEEEECCCCcccccCCHhH--cCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHHhh
Confidence            4557789999999999987654332211  23467899999987642  334679999999999999988764

>PRK06882 acetolactate synthase 3 catalytic subunit; Validated

Probab=94.94  E-value=0.06  Score=53.99  Aligned_cols=70  Identities=16%  Similarity=0.263  Sum_probs=52.7

Q ss_pred             HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHHHHHHcc
Q 024533          104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~L~~~L~  175 (266)
                      .+.+.+++||++|+||+++..........  ...+.++|.||.++....  ...++.|.||+.++|..|++.|.
T Consensus       265 ~~~~~l~~aDlvl~lG~~~~~~~~~~~~~--~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~  336 (574)
T PRK06882        265 EANNAMHESDLILGIGVRFDDRTTNNLAK--YCPNAKVIHIDIDPTSISKNVPAYIPIVGSAKNVLEEFLSLLE  336 (574)
T ss_pred             HHHHHHHhCCEEEEECCCCCccccCchhh--cCCCCeEEEEECCHHHhcCccCCceEEecCHHHHHHHHHHHhh
Confidence            35567889999999999987765443321  234568999998876543  24689999999999999988773

>PF13289 SIR2_2: SIR2-like domain

Probab=94.87  E-value=0.081  Score=42.43  Aligned_cols=62  Identities=15%  Similarity=0.111  Sum_probs=34.9

Q ss_pred             hhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCC----EEEEECCCCCCCCCCccEEEECcHHHHHHHHHHHcccC
Q 024533          102 MNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGG----KIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLNLW  177 (266)
Q Consensus       102 ~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~----~lViIN~~~t~~d~~adl~I~g~~~evl~~L~~~L~~~  177 (266)
                      +..+.+.+-.+..+|++|-|+.=.....+...+.+...    +.++|.+.+.              ++....+++..|++
T Consensus        76 ~~~~l~~~l~~~~~lfiGys~~D~~i~~~l~~~~~~~~~~~~~~~~v~~~~~--------------~~~~~~~~~~~~i~  141 (143)
T PF13289_consen   76 FPNFLRSLLRSKTLLFIGYSFNDPDIRQLLRSALENSGKSRPRHYIVIPDPD--------------DENEREFLEKYGIE  141 (143)
T ss_pred             HHHHHHHHHcCCCEEEEEECCCCHHHHHHHHHHHHhccCCCccEEEEEcCCc--------------hHHHHHHHHHcCCE
Confidence            33444444467788888999875555555544433222    3555544443              35555666666653

>TIGR01504 glyox_carbo_lig glyoxylate carboligase

Probab=94.81  E-value=0.061  Score=54.31  Aligned_cols=69  Identities=13%  Similarity=0.137  Sum_probs=51.2

Q ss_pred             HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHHHHHHc
Q 024533          104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHL  174 (266)
Q Consensus       104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~L~~~L  174 (266)
                      .+.+.+++||++|++|+++.-........  ...+.++|.||.++....  ...++.|.||+..+|.+|.+.+
T Consensus       262 ~a~~~l~~aD~iL~lG~~l~~~~t~~~~~--~~~~~~~I~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l  332 (588)
T TIGR01504       262 YGNATLLESDFVFGIGNRWANRHTGSVDV--YTEGRKFVHVDIEPTQIGRVFAPDLGIVSDAKAALKLLVEVA  332 (588)
T ss_pred             HHHHHHHhCCEEEEECCCCCccccCcccc--cCCCCeEEEeeCCHHHhcCcCCCCeEEEeCHHHHHHHHHHHh
Confidence            34567889999999999986544333211  234677999998876643  3468999999999999998876

Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.

>PRK08527 acetolactate synthase 3 catalytic subunit; Validated

Probab=94.80  E-value=0.069  Score=53.49  Aligned_cols=69  Identities=16%  Similarity=0.266  Sum_probs=51.1

Q ss_pred             HHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHHHHHHcc
Q 024533          105 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       105 a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~L~~~L~  175 (266)
                      +.+.+.+||++|+||+++.-........  ...+.++|.||.++....  ...++.|.|++.++|+.|.+.+.
T Consensus       263 ~~~~l~~aD~vl~lG~~l~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~  333 (563)
T PRK08527        263 ANMAMSECDLLISLGARFDDRVTGKLSE--FAKHAKIIHVDIDPSSISKIVNADYPIVGDLKNVLKEMLEELK  333 (563)
T ss_pred             HHHHHHhCCEEEEeCCCCCccccCChhh--cCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhhh
Confidence            4567889999999999987654333211  233568999999876543  24578999999999999988774

>PRK07789 acetolactate synthase 1 catalytic subunit; Validated

Probab=94.77  E-value=0.076  Score=53.84  Aligned_cols=70  Identities=19%  Similarity=0.323  Sum_probs=51.5

Q ss_pred             HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCC--CCCCccEEEECcHHHHHHHHHHHcc
Q 024533          104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTP--KDKKASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~--~d~~adl~I~g~~~evl~~L~~~L~  175 (266)
                      .+.+.+.+||++|++||++..........  ...++++|.||.++..  .....++.|.||+.++|+.|.+.|.
T Consensus       290 ~~~~~l~~aDlvL~lG~~l~~~~t~~~~~--~~~~~~~i~Id~d~~~i~~~~~~~~~i~gD~~~~l~~L~~~l~  361 (612)
T PRK07789        290 AAVAALQRSDLLIALGARFDDRVTGKLDS--FAPDAKVIHADIDPAEIGKNRHADVPIVGDVKEVIAELIAALR  361 (612)
T ss_pred             HHHHHHHhCCEEEEECCCCCccccCChhh--cCCCCcEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhhh
Confidence            35567889999999999987643322211  1245678999998754  2335689999999999999988774

>PRK09107 acetolactate synthase 3 catalytic subunit; Validated

Probab=94.73  E-value=0.073  Score=53.86  Aligned_cols=70  Identities=17%  Similarity=0.324  Sum_probs=51.8

Q ss_pred             HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC--CccEEEECcHHHHHHHHHHHcc
Q 024533          104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~--~adl~I~g~~~evl~~L~~~L~  175 (266)
                      .+.+.+++||++|+||+++..........  ...+.++|.||.++....+  ..++.|.||+..+|.+|++.|.
T Consensus       273 ~~~~~l~~aDlvL~lG~~~~~~~~~~~~~--~~~~~~~I~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~  344 (595)
T PRK09107        273 EANMAMHDCDVMLCVGARFDDRITGRLDA--FSPNSKKIHIDIDPSSINKNVRVDVPIIGDVGHVLEDMLRLWK  344 (595)
T ss_pred             HHHHHHHhCCEEEEECCCCCccccCchhh--cCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhhh
Confidence            34567889999999999986544333211  2345679999998876443  4689999999999999988764

>PRK06466 acetolactate synthase 3 catalytic subunit; Validated

Probab=94.70  E-value=0.073  Score=53.45  Aligned_cols=70  Identities=21%  Similarity=0.342  Sum_probs=52.3

Q ss_pred             HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC--CccEEEECcHHHHHHHHHHHcc
Q 024533          104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~--~adl~I~g~~~evl~~L~~~L~  175 (266)
                      .+.+.+++||++|++|+++..........  ...+.++|.||.++....+  ..++.|.+++.++|+.|.+.|+
T Consensus       265 ~~~~~l~~aD~il~vG~~~~~~~~~~~~~--~~~~~~vi~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~  336 (574)
T PRK06466        265 EANMAMHHADVILAVGARFDDRVTNGPAK--FCPNAKIIHIDIDPASISKTIKADIPIVGPVESVLTEMLAILK  336 (574)
T ss_pred             HHHHHHHhCCEEEEECCCCCccccCchhh--cCCCCeEEEEECCHHHhCCccCCCeEEecCHHHHHHHHHHHhh
Confidence            35567889999999999987654433211  2235689999998876543  4689999999999999988764

>PRK05858 hypothetical protein; Provisional

Probab=94.66  E-value=0.11  Score=51.91  Aligned_cols=79  Identities=13%  Similarity=0.161  Sum_probs=54.1

Q ss_pred             cCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC--CccEEEECcHHHHHHHH
Q 024533           93 WEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGV  170 (266)
Q Consensus        93 FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~--~adl~I~g~~~evl~~L  170 (266)
                      |.|..|...-..+.+.+.+||++|++|+++........    ...+.++|.||.++.....  ..++.|.|++..+++.|
T Consensus       244 ~~~~hpl~~~~~~~~~l~~aD~vl~vG~~~~~~~~~~~----~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L  319 (542)
T PRK05858        244 VPADHPLAFSRARGKALGEADVVLVVGVPMDFRLGFGV----FGGTAQLVHVDDAPPQRAHHRPVAAGLYGDLSAILSAL  319 (542)
T ss_pred             CCCCCchhhhHHHHHHHHhCCEEEEECCCCcccccccc----cCCCCEEEEECCCHHHhcCCCCCceEEeCCHHHHHHHH
Confidence            44444432223345678899999999998754322211    1234789999999765432  45799999999999999


Q ss_pred             HHHcc
Q 024533          171 MRHLN  175 (266)
Q Consensus       171 ~~~L~  175 (266)
                      .+.+.
T Consensus       320 ~~~l~  324 (542)
T PRK05858        320 AGAGG  324 (542)
T ss_pred             HHhcc
Confidence            88764

>PRK06154 hypothetical protein; Provisional

Probab=94.57  E-value=0.087  Score=52.96  Aligned_cols=68  Identities=19%  Similarity=0.187  Sum_probs=50.6

Q ss_pred             HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCC--CCCccEEEECcHHHHHHHHHHHcc
Q 024533          104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPK--DKKASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~--d~~adl~I~g~~~evl~~L~~~L~  175 (266)
                      .+.+.+++||++|+||+++.-.....    ....+.++|.||.++...  ....++.|.||+.++|+.|++.|.
T Consensus       273 ~~~~~~~~aDlvL~lG~~l~~~~~~~----~~~~~~~vI~id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~  342 (565)
T PRK06154        273 TVAHFLREADVLFGIGCSLTRSYYGL----PMPEGKTIIHSTLDDADLNKDYPIDHGLVGDAALVLKQMIEELR  342 (565)
T ss_pred             HHHHHHHhCCEEEEECCCCcccccCc----cCCCCCeEEEEECCHHHhccccCCCeeEEcCHHHHHHHHHHHhh
Confidence            35567889999999999987532211    123467888888887643  234689999999999999998775

>PRK06456 acetolactate synthase catalytic subunit; Reviewed

Probab=94.57  E-value=0.083  Score=52.96  Aligned_cols=70  Identities=14%  Similarity=0.239  Sum_probs=51.9

Q ss_pred             HHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC--CccEEEECcHHHHHHHHHHHcc
Q 024533          105 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       105 a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~--~adl~I~g~~~evl~~L~~~L~  175 (266)
                      +...+.+||++|++|+++.-.+....... ...+.++|.||.++.....  ..++.|.||+..+|++|++.|.
T Consensus       267 ~~~~~~~aDlvl~lG~~~~~~~~~~~~~~-~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~  338 (572)
T PRK06456        267 ASMAALESDAMLVVGARFSDRTFTSYDEM-VETRKKFIMVNIDPTDGEKAIKVDVGIYGNAKIILRELIKAIT  338 (572)
T ss_pred             HHHHHHhCCEEEEECCCCchhhccccccc-cCCCCeEEEEeCChHHhCCccCCCeEEecCHHHHHHHHHHHhh
Confidence            45567899999999999876665333111 1235689999988876542  4679999999999999988774

>PRK06725 acetolactate synthase 3 catalytic subunit; Validated

Probab=94.51  E-value=0.09  Score=52.92  Aligned_cols=69  Identities=19%  Similarity=0.205  Sum_probs=51.1

Q ss_pred             HHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC--CccEEEECcHHHHHHHHHHHcc
Q 024533          105 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       105 a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~--~adl~I~g~~~evl~~L~~~L~  175 (266)
                      +.+.+.+||++|++|+++..........  ...+.++|.||.++....+  ..++.|.||+.++|.+|.+.++
T Consensus       274 ~~~~l~~aDlil~vG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~i~~~~~~~~~i~gD~~~~l~~L~~~l~  344 (570)
T PRK06725        274 ANMAVTECDLLLALGVRFDDRVTGKLEL--FSPHSKKVHIDIDPSEFHKNVAVEYPVVGDVKKALHMLLHMSI  344 (570)
T ss_pred             HHHHHHhCCEEEEeCCCCCccccCcccc--cCCCCeEEEEeCCHHHhCCCCCCCeEEecCHHHHHHHHHHhcc
Confidence            5567889999999999987554332211  1234678999988876532  4689999999999999988764

>PLN02470 acetolactate synthase

Probab=94.47  E-value=0.096  Score=52.76  Aligned_cols=70  Identities=20%  Similarity=0.274  Sum_probs=50.9

Q ss_pred             HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHHHHHHcc
Q 024533          104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~L~~~L~  175 (266)
                      .+.+.+++||++|+||+++..........  .....++|.||.++....  ...++.|.||+..+|..|.+.|.
T Consensus       272 ~~~~~~~~aDlvl~lG~~l~~~~~~~~~~--~~~~~~~I~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~  343 (585)
T PLN02470        272 YANYAVDSADLLLAFGVRFDDRVTGKLEA--FASRASIVHIDIDPAEIGKNKQPHVSVCADVKLALQGLNKLLE  343 (585)
T ss_pred             HHHHHHHhCCEEEEECCCCcccccCChhh--cCCCCeEEEEECCHHHhCCCcCCCeEEecCHHHHHHHHHHhhh
Confidence            34567889999999999986554332211  123467899999876543  24579999999999999988774

>TIGR02418 acolac_catab acetolactate synthase, catabolic

Probab=94.42  E-value=0.1  Score=51.84  Aligned_cols=69  Identities=14%  Similarity=0.220  Sum_probs=50.6

Q ss_pred             HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHHHHHHcc
Q 024533          104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~L~~~L~  175 (266)
                      .+.+.+++||++|++|+++.-+......   ...+.++|.||.++....  ...++.|.|++..+|+.|.+.+.
T Consensus       255 ~~~~~~~~aDlvl~lG~~~~~~~~~~~~---~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~  325 (539)
T TIGR02418       255 PGDRLLKQADLVITIGYDPIEYEPRNWN---SENDATIVHIDVEPAQIDNNYQPDLELVGDIASTLDLLAERIP  325 (539)
T ss_pred             HHHHHHHhCCEEEEecCcccccCccccC---cCCCCeEEEEeCChHHcCCccCCCeEEecCHHHHHHHHHHhhc
Confidence            3456788999999999997644322221   123468999999987643  34579999999999999988663

Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.

>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase

Probab=94.30  E-value=0.13  Score=51.28  Aligned_cols=69  Identities=16%  Similarity=0.184  Sum_probs=49.2

Q ss_pred             HHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCC--CCCccEEEECcHHHHHHHHHHHcc
Q 024533          106 EENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPK--DKKASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       106 ~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~--d~~adl~I~g~~~evl~~L~~~L~  175 (266)
                      .+.+++|||+|++|+++.-+....-... ...+.++|.|+.++...  ....++.|.|++.++|..|.+.|.
T Consensus       260 ~~~~~~aDlvl~lG~~~~~~~~~~~~~~-~~~~~~vI~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~  330 (554)
T TIGR03254       260 SFALAEADVVMLVGARLNWLLSHGKGKL-WGEDAKFIQVDIEPTEMDSNRPIAAPVVGDIGSVVQALLSAAK  330 (554)
T ss_pred             HHHHhcCCEEEEECCCCchhhccCchhh-cCCCCcEEEcCCCHHHhCCCcCCceEEecCHHHHHHHHHHHhh
Confidence            4468899999999999874443211101 12357888888876543  334579999999999999998774

In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.

>PRK08327 acetolactate synthase catalytic subunit; Validated

Probab=94.27  E-value=0.11  Score=52.14  Aligned_cols=67  Identities=12%  Similarity=0.231  Sum_probs=48.8

Q ss_pred             HHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCC-----CCCccEEEECcHHHHHHHHHHHcc
Q 024533          105 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPK-----DKKASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       105 a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~-----d~~adl~I~g~~~evl~~L~~~L~  175 (266)
                      +.+.+++|||+|++||++...+...    ....++++|.||.++...     ....++.|.||+..+|.+|.+.|.
T Consensus       273 ~~~~~~~aDlvl~lG~~l~~~~~~~----~~~~~~~vi~Id~d~~~~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~  344 (569)
T PRK08327        273 PRADLAEADLVLVVDSDVPWIPKKI----RPDADARVIQIDVDPLKSRIPLWGFPCDLCIQADTSTALDQLEERLK  344 (569)
T ss_pred             cchhhhhCCEEEEeCCCCCCccccc----cCCCCCeEEEEeCChhhhcccccCcceeEEEecCHHHHHHHHHHHHh
Confidence            3456789999999999875333211    123456899999887643     234589999999999999998875

>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed

Probab=94.26  E-value=0.098  Score=52.14  Aligned_cols=69  Identities=10%  Similarity=0.283  Sum_probs=50.0

Q ss_pred             HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHHHHHHc
Q 024533          104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHL  174 (266)
Q Consensus       104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~L~~~L  174 (266)
                      .+...+++||++|++||++.-.-...+..  ...+.++|.||.++....  ...++.|.|++.++|+.|.+.+
T Consensus       255 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~l~~~~  325 (548)
T PRK08978        255 AANLAVQECDLLIAVGARFDDRVTGKLNT--FAPHAKVIHLDIDPAEINKLRQAHVALQGDLNALLPALQQPL  325 (548)
T ss_pred             HHHHHHHhCCEEEEEcCCCCccccCCccc--cCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhc
Confidence            35567789999999999986533222211  233567999998886543  3468999999999999998765

>PRK11269 glyoxylate carboligase; Provisional

Probab=94.26  E-value=0.11  Score=52.50  Aligned_cols=69  Identities=14%  Similarity=0.154  Sum_probs=50.8

Q ss_pred             HHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHHHHHHcc
Q 024533          105 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       105 a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~L~~~L~  175 (266)
                      +.+.+.+||++|++|+++.-.......  ....+.++|.||.++....  ...++.|.+++..+|..|.+.+.
T Consensus       264 ~~~~~~~aDlvl~lG~~~~~~~~~~~~--~~~~~~~~i~Vd~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~  334 (591)
T PRK11269        264 GNATLLASDFVLGIGNRWANRHTGSVE--VYTKGRKFVHVDIEPTQIGRVFGPDLGIVSDAKAALELLVEVAR  334 (591)
T ss_pred             HHHHHHhCCEEEEeCCCCCccccCchh--hcCCCCeEEEeeCCHHHhCCCCCCCeEEEeCHHHHHHHHHHHhh
Confidence            456678999999999997654332221  1234578999998877643  34679999999999999988763

>PRK08199 thiamine pyrophosphate protein; Validated

Probab=94.15  E-value=0.11  Score=51.98  Aligned_cols=72  Identities=19%  Similarity=0.139  Sum_probs=51.0

Q ss_pred             HHHHHhhcCCEEEEEccCCChhhcccchHHH-hcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHHHHHHcc
Q 024533          104 PAEENCRMADVVLCLGTSLQITPACNLPLKS-LRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a-~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~L~~~L~  175 (266)
                      .+.+.+++||++|++|+++.-.+...+.... .....++|.||.++....  ...++.|.||+..+|++|.+.+.
T Consensus       263 ~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~~~i~vd~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~~~  337 (557)
T PRK08199        263 ALAARIREADLVLAVGTRLGEVTTQGYTLLDIPVPRQTLVHVHPDAEELGRVYRPDLAIVADPAAFAAALAALEP  337 (557)
T ss_pred             HHHHHHHhCCEEEEeCCCCccccccccccccccCCCCeEEEEeCCHHHhCCccCCCeEEecCHHHHHHHHHhccc
Confidence            3556778999999999998655543221111 113568999998876543  24589999999999999987654

>PRK08155 acetolactate synthase catalytic subunit; Validated

Probab=94.12  E-value=0.13  Score=51.44  Aligned_cols=69  Identities=19%  Similarity=0.309  Sum_probs=51.3

Q ss_pred             HHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC--CccEEEECcHHHHHHHHHHHcc
Q 024533          105 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       105 a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~--~adl~I~g~~~evl~~L~~~L~  175 (266)
                      +.+.+.+||++|++|+++.........  ....+.++|.||.++....+  ..++.|.+|+.++|.+|.+.+.
T Consensus       271 ~~~~l~~aDlvl~lG~~~~~~~~~~~~--~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~  341 (564)
T PRK08155        271 TNYILQEADLLIVLGARFDDRAIGKTE--QFCPNAKIIHVDIDRAELGKIKQPHVAIQADVDDVLAQLLPLVE  341 (564)
T ss_pred             HHHHHHhCCEEEEECCCCCccccCCHh--hcCCCCeEEEEECCHHHhCCCcCCCeEEecCHHHHHHHHHHhhc
Confidence            455778999999999998765433221  12345689999998876542  4589999999999999988764

>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type

Probab=94.09  E-value=0.11  Score=51.85  Aligned_cols=70  Identities=13%  Similarity=0.272  Sum_probs=51.2

Q ss_pred             HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHHHHHHcc
Q 024533          104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~L~~~L~  175 (266)
                      .+.+.+.+||++|++|+++.-.....+..  ...+.++|.||.++....  ...++.|.||+.++|+.|.+.+.
T Consensus       260 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~  331 (558)
T TIGR00118       260 TANLAVHECDLIIAVGARFDDRVTGNLAK--FAPNAKIIHIDIDPAEIGKNVRVDIPIVGDARNVLEELLKKLF  331 (558)
T ss_pred             HHHHHHHhCCEEEEECCCCCccccCchhh--cCCCCcEEEEeCCHHHhCCcCCCCeEEecCHHHHHHHHHHhhh
Confidence            34567789999999999986543322211  123568999999876533  24589999999999999998774

Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.

>PRK07282 acetolactate synthase catalytic subunit; Reviewed

Probab=94.03  E-value=0.12  Score=51.83  Aligned_cols=70  Identities=14%  Similarity=0.194  Sum_probs=50.6

Q ss_pred             HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC--CccEEEECcHHHHHHHHHHHcc
Q 024533          104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~--~adl~I~g~~~evl~~L~~~L~  175 (266)
                      .+.+.+++||++|++||++.-........  .....++|.||.++....+  ..++.|.+|+..+|..|.+.|.
T Consensus       269 ~~~~~~~~aD~vl~lG~~l~~~~~~~~~~--~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~  340 (566)
T PRK07282        269 AANIAMTEADFMINIGSRFDDRLTGNPKT--FAKNAKVAHIDIDPAEIGKIIKTDIPVVGDAKKALQMLLAEPT  340 (566)
T ss_pred             HHHHHHHhCCEEEEECCCCCccccCChhh--cCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhhc
Confidence            34567889999999999986433222211  1235679999988775432  3578999999999999988764

>PRK08266 hypothetical protein; Provisional

Probab=93.95  E-value=0.087  Score=52.40  Aligned_cols=69  Identities=22%  Similarity=0.306  Sum_probs=50.4

Q ss_pred             HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC-CCccEEEECcHHHHHHHHHHHcc
Q 024533          104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD-KKASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d-~~adl~I~g~~~evl~~L~~~L~  175 (266)
                      .+.+.+.+||++|++|+++... .....  ....+.++|.||.++.... ...++.|.||+..+|+.|.+.+.
T Consensus       256 ~~~~~~~~aDlvl~lG~~~~~~-~~~~~--~~~~~~~~i~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~  325 (542)
T PRK08266        256 AAYELWPQTDVVIGIGSRLELP-TFRWP--WRPDGLKVIRIDIDPTEMRRLKPDVAIVADAKAGTAALLDALS  325 (542)
T ss_pred             HHHHHHHhCCEEEEeCCCcCcc-ccccc--ccCCCCcEEEEECCHHHhCCcCCCceEecCHHHHHHHHHHhhh
Confidence            3456778999999999998765 22221  1234568899888765533 34689999999999999988764

>PRK09259 putative oxalyl-CoA decarboxylase; Validated

Probab=93.90  E-value=0.17  Score=50.77  Aligned_cols=69  Identities=17%  Similarity=0.215  Sum_probs=48.8

Q ss_pred             HHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHHHHHHcc
Q 024533          106 EENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       106 ~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~L~~~L~  175 (266)
                      ...+.+||++|++|+++.-......... ...+.++|.||.++....  ...++.|.||+..+|++|++.+.
T Consensus       267 ~~~l~~aDlvl~lG~~~~~~~~~~~~~~-~~~~~~ii~Id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~  337 (569)
T PRK09259        267 SLALANADVVLLVGARLNWLLSHGKGKT-WGADKKFIQIDIEPQEIDSNRPIAAPVVGDIGSVMQALLAGLK  337 (569)
T ss_pred             HHHHhcCCEEEEeCCCCchhcccCchhc-cCCCCcEEEecCChHHhcCCccCceeEecCHHHHHHHHHHHhh
Confidence            3457899999999999864432211111 124578998888776543  34578999999999999988774

>PRK08611 pyruvate oxidase; Provisional

Probab=93.86  E-value=0.14  Score=51.48  Aligned_cols=65  Identities=15%  Similarity=0.232  Sum_probs=48.6

Q ss_pred             HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHHHHHHcc
Q 024533          104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~L~~~L~  175 (266)
                      .+.+.+++||++|++||++.....  +     ..+.++|.||.++....  ...++.|.+|+..+|..|.+.+.
T Consensus       260 ~a~~~l~~aDlvl~iG~~~~~~~~--~-----~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~  326 (576)
T PRK08611        260 PAYEAMQEADLLIMVGTNYPYVDY--L-----PKKAKAIQIDTDPANIGKRYPVNVGLVGDAKKALHQLTENIK  326 (576)
T ss_pred             HHHHHHHhCCEEEEeCCCCCcccc--C-----CCCCcEEEEeCCHHHcCCccCCCeeEecCHHHHHHHHHHhcc
Confidence            355678899999999999743221  1     22368999999876543  24578999999999999988775

>PRK08273 thiamine pyrophosphate protein; Provisional

Probab=93.81  E-value=0.16  Score=51.32  Aligned_cols=67  Identities=18%  Similarity=0.280  Sum_probs=49.4

Q ss_pred             HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHHHHHHcc
Q 024533          104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~L~~~L~  175 (266)
                      .+.+.+++|||+|++||++....+  ++   ...++++|.||.++....  ...++.|.+|+..+|++|.+.|.
T Consensus       265 ~a~~~~~~aDlvl~lG~~~~~~~~--~~---~~~~~~~i~Id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~  333 (597)
T PRK08273        265 PSYELMRECDTLLMVGSSFPYSEF--LP---KEGQARGVQIDIDGRMLGLRYPMEVNLVGDAAETLRALLPLLE  333 (597)
T ss_pred             HHHHHHHhCCEEEEeCCCCCHHhc--CC---CCCCCeEEEEeCCHHHcCCCCCCCceEecCHHHHHHHHHHhhh
Confidence            456678899999999999743211  11   123578999998876543  24578899999999999988775

>PRK06276 acetolactate synthase catalytic subunit; Reviewed

Probab=93.79  E-value=0.16  Score=51.16  Aligned_cols=70  Identities=11%  Similarity=0.260  Sum_probs=50.6

Q ss_pred             HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHHHHHHcc
Q 024533          104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~L~~~L~  175 (266)
                      .+.+.+++||++|++|+++.-........  ...+.++|.||.++....  ...++.|.+|+..+|+.|++.|.
T Consensus       262 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~  333 (586)
T PRK06276        262 AANYSVTESDVLIAIGCRFSDRTTGDISS--FAPNAKIIHIDIDPAEIGKNVRVDVPIVGDAKNVLRDLLAELM  333 (586)
T ss_pred             HHHHHHHcCCEEEEECCCCCccccCCccc--cCCCCeEEEEECCHHHhCCcCCCceEEecCHHHHHHHHHHhhh
Confidence            45567889999999999976433222211  234567899998876543  23578999999999999998774

>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed

Probab=93.78  E-value=0.15  Score=51.10  Aligned_cols=70  Identities=11%  Similarity=0.248  Sum_probs=50.8

Q ss_pred             HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHHHHHHcc
Q 024533          104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~L~~~L~  175 (266)
                      .+.+.+++||++|++|+++.-.-......  ...+.++|.||.++....  ...++.|.||+..+|+.|.+.+.
T Consensus       266 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~--~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~  337 (561)
T PRK06048        266 YANYAIQESDLIIAVGARFDDRVTGKLAS--FAPNAKIIHIDIDPAEISKNVKVDVPIVGDAKQVLKSLIKYVQ  337 (561)
T ss_pred             HHHHHHHhCCEEEEECCCCCccccCChhh--cCCCCeEEEEECCHHHhCCCCCCCeEEEeCHHHHHHHHHHhcc
Confidence            35567889999999999976433222211  234568999998876533  34589999999999999998775

>PRK06112 acetolactate synthase catalytic subunit; Validated

Probab=93.77  E-value=0.15  Score=51.24  Aligned_cols=70  Identities=17%  Similarity=0.190  Sum_probs=51.0

Q ss_pred             HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC-CCccEEEECcHHHHHHHHHHHcc
Q 024533          104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD-KKASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d-~~adl~I~g~~~evl~~L~~~L~  175 (266)
                      .+.+.+++||++|++|+.+..........  ...+.++|.||.++.... ...++.|.||+..+|++|.+.|.
T Consensus       277 ~~~~~l~~aDlvl~lG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~  347 (578)
T PRK06112        277 HLRDLVREADVVLLVGTRTNQNGTDSWSL--YPEQAQYIHIDVDGEEVGRNYEALRLVGDARLTLAALTDALR  347 (578)
T ss_pred             HHHHHHHhCCEEEEECCCCCccccccccc--cCCCCeEEEEECChHHhCccccceEEEeCHHHHHHHHHHhhh
Confidence            45667889999999999987655433311  234578999998875432 22368899999999999988764

>PRK06965 acetolactate synthase 3 catalytic subunit; Validated

Probab=93.76  E-value=0.15  Score=51.51  Aligned_cols=71  Identities=15%  Similarity=0.242  Sum_probs=51.2

Q ss_pred             HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHHHHHHcc
Q 024533          104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~L~~~L~  175 (266)
                      .+.+.+++||++|+||+++........... ...+.++|.||.++....  ...++.|.||+.++|+.|.+.+.
T Consensus       280 ~a~~~~~~aDlvl~lG~~~~~~~~~~~~~~-~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~  352 (587)
T PRK06965        280 EANMAMQHCDVLIAIGARFDDRVIGNPAHF-ASRPRKIIHIDIDPSSISKRVKVDIPIVGDVKEVLKELIEQLQ  352 (587)
T ss_pred             HHHHHHHhCCEEEEECCCCcccccCChhhc-CCCCceEEEEeCCHHHhCCcCCCCeEEecCHHHHHHHHHHhhh
Confidence            355678899999999999875543221111 123478999998876543  24589999999999999988763

>PRK07525 sulfoacetaldehyde acetyltransferase; Validated

Probab=93.76  E-value=0.13  Score=51.81  Aligned_cols=72  Identities=26%  Similarity=0.264  Sum_probs=51.0

Q ss_pred             HHHHHhhcCCEEEEEccCCChhhccc-chHHHhcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHHHHHHcc
Q 024533          104 PAEENCRMADVVLCLGTSLQITPACN-LPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~-L~~~a~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~L~~~L~  175 (266)
                      .+.+.+++||++|+|||++.-..... ........++++|.||.++....  ...++.|.||+..+|+.|.+.|.
T Consensus       259 ~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~~~~~~iI~Id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~  333 (588)
T PRK07525        259 AAMELIAKADVVLALGTRLNPFGTLPQYGIDYWPKDAKIIQVDINPDRIGLTKKVSVGICGDAKAVARELLARLA  333 (588)
T ss_pred             HHHHHHHhCCEEEEECCCCchhhcccccccccCCCCCeEEEEECCHHHhCCCCCCCceEecCHHHHHHHHHHhhh
Confidence            34567889999999999986432210 00011234678999998876543  34689999999999999998885

>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=93.75  E-value=0.14  Score=51.70  Aligned_cols=70  Identities=13%  Similarity=0.207  Sum_probs=52.0

Q ss_pred             HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC--CccEEEECcHHHHHHHHHHHccc
Q 024533          104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLNL  176 (266)
Q Consensus       104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~--~adl~I~g~~~evl~~L~~~L~~  176 (266)
                      .+...+.+|||+|+|||.+.=.... +...+ .... +|-|+.++....+  ..++.|.||+.++|.+|.+.+.-
T Consensus       259 ~a~~~~~~aDlll~vG~rf~~~~~~-~~~f~-~~~~-ii~iDidp~ei~k~~~~~~~i~gD~~~~l~~L~~~l~~  330 (550)
T COG0028         259 AANEALEEADLLLAVGARFDDRVTG-YSGFA-PPAA-IIHIDIDPAEIGKNYPVDVPIVGDAKATLEALLEELKP  330 (550)
T ss_pred             HHHHHhhcCCEEEEecCCCcccccc-hhhhC-CcCC-EEEEeCChHHhCCCCCCCeeEeccHHHHHHHHHHhhhh
Confidence            4566788999999999998854444 22122 2222 8999999876654  46899999999999999988753

>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase

Probab=93.57  E-value=0.15  Score=51.19  Aligned_cols=70  Identities=24%  Similarity=0.252  Sum_probs=50.3

Q ss_pred             HHHHHhhcCCEEEEEccCCChhhc---ccchHHHhcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHHHHHHcc
Q 024533          104 PAEENCRMADVVLCLGTSLQITPA---CNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       104 ~a~~~~~~aDLlLvlGTSL~V~Pa---~~L~~~a~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~L~~~L~  175 (266)
                      .+.+.+++|||+|++|+.+.-...   ...  .....++++|.||.++....  ...++.|.||+..+|.+|++.|.
T Consensus       255 ~~~~~l~~aDlil~lG~~~~~~~~~~~~~~--~~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~  329 (579)
T TIGR03457       255 AAMKLISDADVVLALGTRLGPFGTLPQYGI--DYWPKNAKIIQVDANAKMIGLVKKVTVGICGDAKAAAAEILQRLA  329 (579)
T ss_pred             HHHHHHHhCCEEEEECCCCccccccccccc--ccCCCCCeEEEEeCCHHHhCCCCCCCeeEecCHHHHHHHHHHhhh
Confidence            355678899999999999863211   111  01234678999998876543  24689999999999999998874

Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.

>PRK06546 pyruvate dehydrogenase; Provisional

Probab=93.46  E-value=0.18  Score=50.90  Aligned_cols=64  Identities=20%  Similarity=0.338  Sum_probs=49.1

Q ss_pred             HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC--CccEEEECcHHHHHHHHHHHcc
Q 024533          104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~--~adl~I~g~~~evl~~L~~~L~  175 (266)
                      .+.+.+++|||+|+||+++...   .+     ..+.++|.||.++....+  ..++.|.||+..+|.+|.+.|+
T Consensus       258 ~~~~~l~~aDlvl~lG~~~~~~---~~-----~~~~~~I~vd~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~L~  323 (578)
T PRK06546        258 AAHEAMHEADLLILLGTDFPYD---QF-----LPDVRTAQVDIDPEHLGRRTRVDLAVHGDVAETIRALLPLVK  323 (578)
T ss_pred             HHHHHHHhCCEEEEEcCCCChh---hc-----CCCCcEEEEeCCHHHhCCCCCCCeEEEcCHHHHHHHHHHhhc
Confidence            3556788999999999987532   11     123578999988876543  4679999999999999998885

>PRK08617 acetolactate synthase; Reviewed

Probab=93.39  E-value=0.17  Score=50.54  Aligned_cols=68  Identities=15%  Similarity=0.211  Sum_probs=49.3

Q ss_pred             HHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC--CccEEEECcHHHHHHHHHHHcc
Q 024533          105 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       105 a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~--~adl~I~g~~~evl~~L~~~L~  175 (266)
                      +.+.+.+||++|++|+++.-+......   ...+.++|.||.++...+.  ..++.|.+++..+|+.|.+.+.
T Consensus       262 ~~~~~~~aDlvl~lG~~~~~~~~~~~~---~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~  331 (552)
T PRK08617        262 GDELLKKADLVITIGYDPIEYEPRNWN---SEGDATIIHIDVLPAEIDNYYQPERELIGDIAATLDLLAEKLD  331 (552)
T ss_pred             HHHHHHhCCEEEEecCccccccccccc---cCCCCcEEEEeCChHHhCCccCCCeEEeCCHHHHHHHHHHhhh
Confidence            455688999999999987533322111   1234689999998876543  4589999999999999987664

>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase

Probab=93.28  E-value=0.2  Score=48.64  Aligned_cols=66  Identities=15%  Similarity=0.100  Sum_probs=48.9

Q ss_pred             HHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC--CccEEEECcHHHHHHHHHHHcc
Q 024533          106 EENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       106 ~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~--~adl~I~g~~~evl~~L~~~L~  175 (266)
                      .+.+ ++|++|++|+.+.-.......   ...++++|.|+.++...+.  ..++.|.||+.++|..|.+.+.
T Consensus       270 ~~~~-~aDlvl~lG~~~~~~~~~~~~---~~~~~~~i~vd~d~~~~~~~~~~~~~i~~D~~~~l~~l~~~~~  337 (432)
T TIGR00173       270 REEL-QPDLVIRFGGPPVSKRLRQWL---ARQPAEYWVVDPDPGWLDPSHHATTRLEASPAEFAEALAGLLK  337 (432)
T ss_pred             hhhC-CCCEEEEeCCCcchhHHHHHH---hCCCCcEEEECCCCCccCCCCCceEEEEECHHHHHHHhhhccC
Confidence            3445 899999999998654433321   1245789999998876653  4579999999999999887763

2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.

>PRK07710 acetolactate synthase catalytic subunit; Reviewed

Probab=93.00  E-value=0.3  Score=49.05  Aligned_cols=70  Identities=9%  Similarity=0.173  Sum_probs=50.1

Q ss_pred             HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHHHHHHcc
Q 024533          104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~L~~~L~  175 (266)
                      .+.+.+.+||++|++|+++.-........  ...+.++|.||.++....  ...++.|.+|+..+|.+|.+.++
T Consensus       274 ~~~~~l~~aDlvL~lG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~ig~~~~~~~~i~~D~~~~l~~L~~~~~  345 (571)
T PRK07710        274 TANMALYECDLLINIGARFDDRVTGNLAY--FAKEATVAHIDIDPAEIGKNVPTEIPIVADAKQALQVLLQQEG  345 (571)
T ss_pred             HHHHHHHhCCEEEEeCCCCCccccCchhh--cCCCCeEEEEECCHHHhcCcCCCCeEEecCHHHHHHHHHHhhh
Confidence            35567789999999999986543322211  123467888998876432  24579999999999999988765

>PRK07064 hypothetical protein; Provisional

Probab=92.89  E-value=0.22  Score=49.51  Aligned_cols=68  Identities=19%  Similarity=0.292  Sum_probs=49.6

Q ss_pred             HHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHHHHHHcc
Q 024533          105 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       105 a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~L~~~L~  175 (266)
                      +.+.+.+|||+|++|+++.-.......   .....+++.||.++....  ...++.|.+++..+|+.|.+.+.
T Consensus       258 ~~~~~~~aDlvl~iG~~~~~~~~~~~~---~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~  327 (544)
T PRK07064        258 VEALYKTCDLLLVVGSRLRGNETLKYS---LALPRPLIRVDADAAADGRGYPNDLFVHGDAARVLARLADRLE  327 (544)
T ss_pred             HHHHHHhCCEEEEecCCCCcccccccc---cCCCCceEEEeCCHHHhCCcCCCCceEecCHHHHHHHHHHhhh
Confidence            556778999999999998755543321   112347888988876443  34688999999999999988764

>TIGR02720 pyruv_oxi_spxB pyruvate oxidase

Probab=92.79  E-value=0.23  Score=49.98  Aligned_cols=68  Identities=18%  Similarity=0.343  Sum_probs=47.7

Q ss_pred             HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHHHHHHcc
Q 024533          104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~L~~~L~  175 (266)
                      .+.+.+++||++|++||++....+   ... ...+..+|.||.++....  ...++.|.||+..+|.+|.+.|.
T Consensus       257 ~~~~~l~~aDlvl~vG~~~~~~~~---~~~-~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~  326 (575)
T TIGR02720       257 PANEALFQADLVLFVGNNYPFAEV---SKA-FKNTKYFIQIDIDPAKLGKRHHTDIAVLADAKKALAAILAQVE  326 (575)
T ss_pred             HHHHHHHhCCEEEEeCCCCCcccc---ccc-cCCCceEEEEeCCHHHhCCCCCCCeEEecCHHHHHHHHHHhcc
Confidence            345678899999999998743222   111 123445588988776543  24578999999999999988775

Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.

>PLN00022 electron transfer flavoprotein subunit alpha; Provisional

Probab=92.53  E-value=0.29  Score=46.85  Aligned_cols=60  Identities=17%  Similarity=0.232  Sum_probs=50.3

Q ss_pred             cCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCC-CCCCCccEEEECcHHHHHHHHHHHcc
Q 024533          111 MADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQT-PKDKKASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       111 ~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t-~~d~~adl~I~g~~~evl~~L~~~L~  175 (266)
                      ..+|.|.+|-|.+++-.+.+     +.-..+|-||.++. +.-+.+|+.|-||..++++.|.+++.
T Consensus       293 ~P~lYIA~GISGAiQH~~Gm-----~~s~~IVAIN~D~~APIF~~ADygIVgD~~evlP~Lie~lk  353 (356)
T PLN00022        293 APELYIAVGISGAIQHLAGM-----KDSKVIVAINKDADAPIFQVADYGLVADLFEAVPELLEKLP  353 (356)
T ss_pred             CCcEEEEEecchHHHHHhhc-----ccCCEEEEECCCCCCCchhhcCeeEeeeHHHHHHHHHHHHH
Confidence            47899999999999887776     23346899999975 55678999999999999999999864

>PRK11916 electron transfer flavoprotein subunit YdiR; Provisional

Probab=92.42  E-value=0.3  Score=45.86  Aligned_cols=60  Identities=27%  Similarity=0.313  Sum_probs=49.5

Q ss_pred             cCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCC-CCCCCccEEEECcHHHHHHHHHHHcc
Q 024533          111 MADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQT-PKDKKASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       111 ~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t-~~d~~adl~I~g~~~evl~~L~~~L~  175 (266)
                      ..+|.|.+|-|.+++-.+.+     +.-..+|-||.++. +.-+.+|+.|-||..+++++|.+.+.
T Consensus       251 ~P~lYiA~GISGAiQH~aGm-----~~s~~IVAIN~Dp~APIF~~ADygiVgD~~~vlP~L~e~l~  311 (312)
T PRK11916        251 KSDLYLTLGISGQIQHMVGG-----NGAKVIVAINKDKNAPIFNYADYGLVGDIYKVVPALISQLS  311 (312)
T ss_pred             CccEEEEeccccHHHHHhhc-----ccCCEEEEECCCCCCCchhhCCeeEeeeHHHHHHHHHHHhh
Confidence            46799999999998887776     23346899999975 45678999999999999999998863

>PRK03363 fixB putative electron transfer flavoprotein FixB; Provisional

Probab=92.33  E-value=0.33  Score=45.63  Aligned_cols=60  Identities=18%  Similarity=0.220  Sum_probs=49.7

Q ss_pred             cCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCC-CCCCCccEEEECcHHHHHHHHHHHcc
Q 024533          111 MADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQT-PKDKKASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       111 ~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t-~~d~~adl~I~g~~~evl~~L~~~L~  175 (266)
                      ..+|.|.+|-|.+++-...+     +.-..+|-||.++. +.-+.+|+.|-||.-++++.|.+.+.
T Consensus       252 ~P~lYiA~GISGaiQH~~Gm-----~~s~~IVAIN~Dp~APIF~~ADygiVgD~~eilP~L~e~l~  312 (313)
T PRK03363        252 KPELYLAVGISGQIQHMVGA-----NASQTIFAINKDKNAPIFQYADYGIVGDAVKILPALTAALA  312 (313)
T ss_pred             CccEEEEEccccHHHHHhhc-----ccCCEEEEEcCCCCCCchhhCCeeEeeeHHHHHHHHHHHhh
Confidence            46899999999999887776     23346899999975 55678999999999999999998863

>PRK09124 pyruvate dehydrogenase; Provisional

Probab=92.25  E-value=0.32  Score=48.81  Aligned_cols=64  Identities=17%  Similarity=0.273  Sum_probs=48.0

Q ss_pred             HHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC--CccEEEECcHHHHHHHHHHHcc
Q 024533          105 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       105 a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~--~adl~I~g~~~evl~~L~~~L~  175 (266)
                      +.+.+++||++|++|+++...   .+    ...+.++|.||.++....+  ..++.|.||+.+++..|.+.+.
T Consensus       259 ~~~~~~~aDlvl~lG~~~~~~---~~----~~~~~~ii~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~  324 (574)
T PRK09124        259 GYHAMMNCDTLLMLGTDFPYR---QF----YPTDAKIIQIDINPGSLGRRSPVDLGLVGDVKATLAALLPLLE  324 (574)
T ss_pred             HHHHHHhCCEEEEECCCCCcc---cc----cCCCCcEEEeeCCHHHhCCCCCCCeEEEccHHHHHHHHHHhhh
Confidence            456778999999999987532   11    1234689999998866432  4589999999999999988764

>COG2025 FixB Electron transfer flavoprotein, alpha subunit [Energy production and conversion]

Probab=91.78  E-value=0.43  Score=44.87  Aligned_cols=60  Identities=18%  Similarity=0.266  Sum_probs=50.6

Q ss_pred             cCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCC-CCCCCccEEEECcHHHHHHHHHHHcc
Q 024533          111 MADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQT-PKDKKASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       111 ~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t-~~d~~adl~I~g~~~evl~~L~~~L~  175 (266)
                      ..||.|.+|-|.+++-.+.|     +.-..+|-||.++. |.=+.+|+.|-||.-+++|.|.++|+
T Consensus       251 ~P~LYIA~GISGAiQHlaGm-----~~Sk~IVAINkD~nAPIF~~ADyGiVgDl~~ivP~Lie~l~  311 (313)
T COG2025         251 APKLYIALGISGAIQHLAGM-----KDSKVIVAINKDPNAPIFQVADYGIVGDLFKIVPALIEALK  311 (313)
T ss_pred             cccEEEEEecccHHHHHhhc-----ccCcEEEEEcCCCCCCccccCCeeeeeeHHHHHHHHHHHHh
Confidence            47899999999999888776     23346899999975 45578999999999999999999875

>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]

Probab=91.46  E-value=0.28  Score=48.60  Aligned_cols=69  Identities=20%  Similarity=0.275  Sum_probs=51.4

Q ss_pred             HHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCC-CC--CccEEEECcHHHHHHHHHHHccc
Q 024533          107 ENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPK-DK--KASLVVHAPVDKVIAGVMRHLNL  176 (266)
Q Consensus       107 ~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~-d~--~adl~I~g~~~evl~~L~~~L~~  176 (266)
                      .++++||++|++|+-|.-.--..++.. -.+..++|.||..+... ..  ..++.|.||+..++.+|.+.|+-
T Consensus       272 ~ALk~ADvvll~GarlnwiLhfG~~Pk-~~kd~KfIqvd~n~Eel~~n~~k~~v~i~gDig~~~~~L~e~l~~  343 (571)
T KOG1185|consen  272 LALKKADVVLLAGARLNWILHFGLPPK-WSKDVKFIQVDINPEELGNNFVKPDVAIQGDIGLFVLQLVEELQD  343 (571)
T ss_pred             HHHhhCCEEEEecceeeEEEecCCCCc-cCCCceEEEEeCCHHHHhcccCCCCceeeecHHHHHHHHHHHhcC
Confidence            357899999999998875333333221 35678888888876553 22  56899999999999999999873

>PLN02573 pyruvate decarboxylase

Probab=89.61  E-value=0.54  Score=47.46  Aligned_cols=69  Identities=14%  Similarity=0.156  Sum_probs=46.7

Q ss_pred             HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCCccEEEECcHHHHHHHHHHHcc
Q 024533          104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~g~~~evl~~L~~~L~  175 (266)
                      .+.+.+++||++|++|+++.-........  ...+.++|.||.++.......++.+. ++..++..|.+.|.
T Consensus       284 ~~~~~~~~aDlvl~lG~~l~~~~~~~~~~--~~~~~~~I~id~d~~~i~~~~~~~~~-~~~~~l~~L~~~l~  352 (578)
T PLN02573        284 FCAEIVESADAYLFAGPIFNDYSSVGYSL--LLKKEKAIIVQPDRVTIGNGPAFGCV-LMKDFLEALAKRVK  352 (578)
T ss_pred             HHHHHHHhCCEEEEECCccCCcccccccc--cCCCCcEEEEeCCEEEECCcceECCc-CHHHHHHHHHHHhh
Confidence            34567789999999999986544322211  12457799999988765443344433 68888888888774

>PRK07092 benzoylformate decarboxylase; Reviewed

Probab=89.46  E-value=0.62  Score=46.31  Aligned_cols=72  Identities=11%  Similarity=0.086  Sum_probs=48.6

Q ss_pred             hHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC-CCccEEEECcHHHHHHHHHHHcc
Q 024533          103 NPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD-KKASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       103 ~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d-~~adl~I~g~~~evl~~L~~~L~  175 (266)
                      ..+.+.+++||++|++|+++.-+........ ...+.++|.||.++.... ...++.|.|++..++++|.+.|.
T Consensus       264 ~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~-~~~~~~~i~id~d~~~~~~~~~~~~i~~d~~~~l~~L~~~l~  336 (530)
T PRK07092        264 EKISALLDGHDLVLVIGAPVFTYHVEGPGPH-LPEGAELVQLTDDPGEAAWAPMGDAIVGDIRLALRDLLALLP  336 (530)
T ss_pred             HHHHHHHhhCCEEEEECCcccccccCCcccc-CCCCCeEEEEeCChHHhcCCCCCCcccCCHHHHHHHHHHhhc
Confidence            3455678899999999997422211111101 123578899998876532 23568899999999999998875

>PRK06457 pyruvate dehydrogenase; Provisional

Probab=89.43  E-value=0.92  Score=45.34  Aligned_cols=59  Identities=24%  Similarity=0.350  Sum_probs=43.8

Q ss_pred             HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHH
Q 024533          104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAG  169 (266)
Q Consensus       104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~  169 (266)
                      .+.+.+++||++|++|+++.....       ...+.++|.||.++....  ...++.|.|++..+|..
T Consensus       252 ~~~~~l~~aDlvl~lG~~~~~~~~-------~~~~~~ii~id~d~~~~~~~~~~~~~i~~d~~~~l~~  312 (549)
T PRK06457        252 PSIEAMDKADLLIMLGTSFPYVNF-------LNKSAKVIQVDIDNSNIGKRLDVDLSYPIPVAEFLNI  312 (549)
T ss_pred             HHHHHHHhCCEEEEECCCCChhhc-------CCCCCcEEEEeCCHHHhCCCCCCCeEEecCHHHHHHH
Confidence            355677899999999999854321       123568999999886643  34689999999999953

>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site

Probab=89.36  E-value=0.41  Score=47.36  Aligned_cols=55  Identities=18%  Similarity=0.299  Sum_probs=42.5

Q ss_pred             HHHhhcCCEEEEEccCCCh-hh-cccchHHHhcCCCEEEEECCCCCCCCCCccEEEE
Q 024533          106 EENCRMADVVLCLGTSLQI-TP-ACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH  160 (266)
Q Consensus       106 ~~~~~~aDLlLvlGTSL~V-~P-a~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~  160 (266)
                      .+.+.++|++|++|+-... .| .......|+++|+++|.|++..+.....+|++|.
T Consensus       152 ~~d~~~ad~il~~G~Np~~s~p~~~~~~~~a~~~GaklivvDPr~t~ta~~Ad~~l~  208 (501)
T cd02766         152 PEDMVNADLIVIWGINPAATNIHLMRIIQEARKRGAKVVVIDPYRTATAARADLHIQ  208 (501)
T ss_pred             HHHHhcCCEEEEECCChhhhchhHHHHHHHHHHCCCEEEEECCCCCccHHHhCeeec
Confidence            4567899999999998655 23 2233345788999999999999998888888764

These members belong to the molybdopterin_binding (MopB) superfamily of proteins

>cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins

Probab=89.07  E-value=0.9  Score=44.38  Aligned_cols=55  Identities=24%  Similarity=0.382  Sum_probs=41.4

Q ss_pred             HHHhhcCCEEEEEccCCChh-h-cccchHHHhcCCCEEEEECCCCCCCCCCccEEEE
Q 024533          106 EENCRMADVVLCLGTSLQIT-P-ACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH  160 (266)
Q Consensus       106 ~~~~~~aDLlLvlGTSL~V~-P-a~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~  160 (266)
                      ...+.+||++|++|+-.... | .......++++|+++|.||+..+.....+|.+|.
T Consensus       165 ~~d~~~ad~il~~G~N~~~~~~~~~~~l~~ar~~GaklividPr~s~ta~~Ad~~l~  221 (461)
T cd02750         165 SADWYNADYIIMWGSNVPVTRTPDAHFLTEARYNGAKVVVVSPDYSPSAKHADLWVP  221 (461)
T ss_pred             hhHHhcCcEEEEECCChHHccCchHHHHHHHHHCCCEEEEEcCCCCcchhhcCEEec
Confidence            45678899999999976553 2 1122234778999999999999998888888764

Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. Members of the MopB_Nitrate-R-NarG-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.

>COG3962 Acetolactate synthase [Amino acid transport and metabolism]

Probab=88.33  E-value=1.1  Score=44.35  Aligned_cols=70  Identities=24%  Similarity=0.220  Sum_probs=53.4

Q ss_pred             HHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCCccEEEECcHHHHHHHHHHHcc
Q 024533          105 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       105 a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~g~~~evl~~L~~~L~  175 (266)
                      |...+.+|||+|-|||-++=.-..+-.. ....+.+++.||-++-..-+...+-+-+|+...|.+|...|+
T Consensus       289 AN~~A~~ADlVigiGTR~~DFTTgS~al-F~~~~~k~l~lNV~~~da~K~~a~~lvaDAr~~L~~L~~~L~  358 (617)
T COG3962         289 ANRAAEEADLVIGIGTRLQDFTTGSKAL-FKNPGVKFLNLNVQPFDAYKHDALPLVADARAGLEALSEALG  358 (617)
T ss_pred             HHhhhhhcCEEEEecccccccccccHHH-hcCCCceEEEeecccccccccccceehhHHHHHHHHHHHHhc
Confidence            4556678999999999987655444321 245788899999888665555668889999999999988874

>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional

Probab=88.21  E-value=1.3  Score=43.69  Aligned_cols=88  Identities=16%  Similarity=0.264  Sum_probs=59.7

Q ss_pred             cccEEEcCCCCChhc---hhHHHHHhhcCCEEEEEccCCChhhcccc---------hHHHhcCCCEEEEECCCCCC-C--
Q 024533           87 KDTVLDWEDALPPVE---MNPAEENCRMADVVLCLGTSLQITPACNL---------PLKSLRGGGKIVIVNLQQTP-K--  151 (266)
Q Consensus        87 rP~Vv~FgE~lp~~~---~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L---------~~~a~~~g~~lViIN~~~t~-~--  151 (266)
                      +-||++=+-.+|.+.   +++....+++.|+.||+|..=.|.|+++-         |-.-..+-..++++++.-.+ +  
T Consensus       354 HMNVLLAEA~VPYd~v~eMdeIN~~F~~tDvalVIGANDvVNPaA~~dp~SpIyGMPvL~v~kAk~Viv~KRs~~~GyAG  433 (462)
T PRK09444        354 HMNVLLAEAKVPYDIVLEMDEINDDFADTDTVLVIGANDTVNPAAQEDPNSPIAGMPVLEVWKAQNVIVFKRSMNTGYAG  433 (462)
T ss_pred             cceeEEeecCCCHHHHHhHHhhccccccCCEEEEecCccCCCcccccCCCCCcCCCceeehhhCCEEEEEeCCCCCCcCC
Confidence            458898888888763   55566678899999999999999888742         21111112234555554332 1  


Q ss_pred             ------CCCccEEEECcHHHHHHHHHHHc
Q 024533          152 ------DKKASLVVHAPVDKVIAGVMRHL  174 (266)
Q Consensus       152 ------d~~adl~I~g~~~evl~~L~~~L  174 (266)
                            -+..+..+.||+.+.+.+|.+.+
T Consensus       434 v~NpLF~~~nt~MlfGDAK~~~~~l~~~~  462 (462)
T PRK09444        434 VQNPLFFKENTQMLFGDAKASVDAILKAL  462 (462)
T ss_pred             CCCcceecCCceEEeccHHHHHHHHHHhC
Confidence                  13456788999999999987653

>cd02765 MopB_4 The MopB_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site

Probab=88.15  E-value=0.67  Score=46.60  Aligned_cols=55  Identities=20%  Similarity=0.224  Sum_probs=42.2

Q ss_pred             HHHhhcCCEEEEEccCCChh-h-cccchHHHhcCCCEEEEECCCCCCCCCCccEEEE
Q 024533          106 EENCRMADVVLCLGTSLQIT-P-ACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH  160 (266)
Q Consensus       106 ~~~~~~aDLlLvlGTSL~V~-P-a~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~  160 (266)
                      ...+.+||++|++|+..... | .......++++|+++|.|++..+.....+|.+|.
T Consensus       154 ~~D~~~ad~il~~G~Np~~s~~~~~~~~~~a~~~GakliviDPr~s~ta~~Ad~~l~  210 (567)
T cd02765         154 ITDWVNAKTIIIWGSNILETQFQDAEFFLDARENGAKIVVIDPVYSTTAAKADQWVP  210 (567)
T ss_pred             HhHHhcCcEEEEECCChHHccchhHHHHHHHHHcCCeEEEECCCCCcchhhcCEEec
Confidence            44567999999999986553 2 2233345778999999999999998888888764

These members belong to the molybdopterin_binding (MopB) superfamily of proteins

>cd02759 MopB_Acetylene-hydratase The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins

Probab=88.08  E-value=0.96  Score=44.30  Aligned_cols=54  Identities=13%  Similarity=0.203  Sum_probs=41.0

Q ss_pred             HHhhcCCEEEEEccCCChh-h--cccchHHHhcCCCEEEEECCCCCCCCCCccEEEE
Q 024533          107 ENCRMADVVLCLGTSLQIT-P--ACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH  160 (266)
Q Consensus       107 ~~~~~aDLlLvlGTSL~V~-P--a~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~  160 (266)
                      ..+.+||++|++|+-.... |  .......++++|+++|.||+..+.....+|.+|.
T Consensus       156 ~d~~~ad~Il~~G~n~~~~~~~~~~~~~~~ar~~g~klividpr~s~ta~~Ad~~l~  212 (477)
T cd02759         156 PDWENPECIVLWGKNPLNSNLDLQGHWLVAAMKRGAKLIVVDPRLTWLAARADLWLP  212 (477)
T ss_pred             hhhhcCCEEEEEccChhhhCcHHHHHHHHHHHHCCCEEEEECCCCChhhHhhCeeec
Confidence            4567999999999976553 2  2222234667899999999999988888888875

The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.

>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family

Probab=88.01  E-value=0.39  Score=47.85  Aligned_cols=69  Identities=14%  Similarity=0.209  Sum_probs=46.0

Q ss_pred             HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC--CccEEEECcHHHHHHHHHHHcc
Q 024533          104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~--~adl~I~g~~~evl~~L~~~L~  175 (266)
                      .+.+.+++||++|++|+++.-......... . ...++|-||.++....+  ..++.| +|+..+|.+|.+.++
T Consensus       265 ~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~-~-~~~~~I~id~~~~~~~~~~~~~~~i-~D~~~~l~~l~~~l~  335 (539)
T TIGR03393       265 AVKEAIEGADAVICVGVRFTDTITAGFTHQ-L-TPEQTIDVQPHAARVGNVWFTGIPM-NDAIETLVELCEHAG  335 (539)
T ss_pred             HHHHHHhhCCEEEEECCcccccccceeecc-C-CcccEEEEcCCeEEECceEeCCcCH-HHHHHHHHHHhhhcc
Confidence            456678899999999999865433222111 1 12468888887654322  235556 899999999988774

A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.

>PF02233 PNTB: NAD(P) transhydrogenase beta subunit; InterPro: IPR012136 NAD(P) transhydrogenase catalyses the transfer of reducing equivalents between NAD(H) and NADP(H), coupled to the translocation of protons across a membrane []

Probab=87.53  E-value=0.65  Score=45.87  Aligned_cols=87  Identities=21%  Similarity=0.345  Sum_probs=55.4

Q ss_pred             ccEEEcCCCCChh---chhHHHHHhhcCCEEEEEccCCChhhccc---------chHHHhcCCCEEEEECCCCCC-----
Q 024533           88 DTVLDWEDALPPV---EMNPAEENCRMADVVLCLGTSLQITPACN---------LPLKSLRGGGKIVIVNLQQTP-----  150 (266)
Q Consensus        88 P~Vv~FgE~lp~~---~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~---------L~~~a~~~g~~lViIN~~~t~-----  150 (266)
                      -||++=+-.+|.+   ++++....++++|+.||+|..=.|.|+++         ||-.-..+-..+|++++.-.+     
T Consensus       356 MNVLLAEa~VpYd~~~emdeiN~~f~~~Dv~lViGANDvVNPaA~~d~~SpI~GMPil~v~~ak~Viv~Krsm~~Gyagv  435 (463)
T PF02233_consen  356 MNVLLAEANVPYDIVKEMDEINPDFPDTDVVLVIGANDVVNPAAREDPNSPIYGMPILEVWKAKQVIVIKRSMSPGYAGV  435 (463)
T ss_dssp             HHHHHHHCT--GGGEEEHHHHGGGGGG-SEEEEES-SGGG-CHHCCSTTSTTTTSS---GGGSSEEEEEESSS--TTTS-
T ss_pred             ceEEEEecCCCHHHHhhhhhcccchhcCCEEEEeccccccCchhccCCCCCCCCCeecchhhcCeEEEEEcCCCCCCCCC
Confidence            5777777778876   46667778999999999999999977653         442222233457777776443     


Q ss_pred             ----CCCCccEEEECcHHHHHHHHHHHc
Q 024533          151 ----KDKKASLVVHAPVDKVIAGVMRHL  174 (266)
Q Consensus       151 ----~d~~adl~I~g~~~evl~~L~~~L  174 (266)
                          +.+..+..+.||+.+.+.++.+++
T Consensus       436 ~NpLF~~~nt~MlfGDAk~~~~~l~~~~  463 (463)
T PF02233_consen  436 DNPLFYKDNTRMLFGDAKKTLEELVAEL  463 (463)
T ss_dssp             S-GGGGSTTEEEEES-HHHHHHHHHHHH
T ss_pred             CCcceecCCcEEEeccHHHHHHHHHHhC
Confidence                124567889999999999998764

It is an integral membrane protein found in most organisms except for yeasts, plants and some bacterial species. In bacterial species it is located in the cytoplasmic membrane, while in mitochondria it is located in the inner membrane. Under most physiological conditions this enzyme synthesises NADPH, driven by consumption of the proton electrochemical gradient. The resulting NADPH is subsequently used for biosynthetic reactions or the reduction of glutathione. The global structure of this enzyme is similar in all organisms, consisting of three distinct domains, though the polypeptide composition can vary. Domain I binds NAD(+)/NADH, domain II is a hydrophobic membrane-spanning domain, and domain III binds NADP(+)/NADPH. Domain I is composed of two subdomains, both of which form a Rossman fold, while domain III consists of a single Rossman fold where the NADP(+) is flipped relative to the normal orientation of bound nucleotides within the Rossman fold [, , ]. Several residues within these domains are thought to make functionally important interdomain contacts for hydride transfer between these domains []. Proton translocation occurs through domain II and is thought to induce conformational changes which are transmitted across domain III to the site of hydride transfer between domains I and III. This entry represents the beta subunit found in bacterial two-subunit NADP(H) transhydrogenases. This subunit forms domain III and part of the transmembrane domain II. ; GO: 0008750 NAD(P)+ transhydrogenase (AB-specific) activity, 0050661 NADP binding, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 1PT9_A 1DJL_A 1U31_B 2BRU_C 1PTJ_C 1HZZ_C 2FRD_C 2FSV_C 1XLT_C 1U2G_C ....

>cd02753 MopB_Formate-Dh-H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons

Probab=86.65  E-value=1.5  Score=43.24  Aligned_cols=55  Identities=22%  Similarity=0.362  Sum_probs=40.9

Q ss_pred             HHHhhcCCEEEEEccCCChh-h-cccchHHHhcCCCEEEEECCCCCCCCCCccEEEE
Q 024533          106 EENCRMADVVLCLGTSLQIT-P-ACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH  160 (266)
Q Consensus       106 ~~~~~~aDLlLvlGTSL~V~-P-a~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~  160 (266)
                      ...+.++|++|++|+..... | .......++++|+++|.|++..+.....+|.+|.
T Consensus       151 ~~d~~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~k~i~Idp~~s~ta~~Ad~~l~  207 (512)
T cd02753         151 IADIEEADVILVIGSNTTEAHPVIARRIKRAKRNGAKLIVADPRRTELARFADLHLQ  207 (512)
T ss_pred             HHHHHhCCEEEEECCChhhhhHHHHHHHHHHHHCCCeEEEEcCCCccchHhhCeeeC
Confidence            34567999999999976442 2 1122234678899999999999988778888875

It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. Members of the MopB_Formate-Dh-H CD belong to the molybdopterin_binding (MopB) superfamily of proteins.

>smart00834 CxxC_CXXC_SSSS Putative regulatory protein

Probab=86.12  E-value=0.43  Score=30.55  Aligned_cols=34  Identities=21%  Similarity=0.572  Sum_probs=21.7

Q ss_pred             ceeecCCCCcccchhhHHHHhhccCCCCCCCCCCCCCccc
Q 024533           48 FREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGSRLK   87 (266)
Q Consensus        48 ~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg~lr   87 (266)
                      +..+|..||+.|......   .. .....||  .||+.++
T Consensus         4 Y~y~C~~Cg~~fe~~~~~---~~-~~~~~CP--~Cg~~~~   37 (41)
T smart00834        4 YEYRCEDCGHTFEVLQKI---SD-DPLATCP--ECGGDVR   37 (41)
T ss_pred             EEEEcCCCCCEEEEEEec---CC-CCCCCCC--CCCCcce
Confidence            456899999987533211   11 3356798  9998654

CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site

Probab=86.02  E-value=1.8  Score=43.95  Aligned_cols=44  Identities=20%  Similarity=0.409  Sum_probs=31.7

Q ss_pred             HHHhhcCCEEEEEccCCCh-hhc-ccchHHHhcCCCEEEEECCCCC
Q 024533          106 EENCRMADVVLCLGTSLQI-TPA-CNLPLKSLRGGGKIVIVNLQQT  149 (266)
Q Consensus       106 ~~~~~~aDLlLvlGTSL~V-~Pa-~~L~~~a~~~g~~lViIN~~~t  149 (266)
                      .+.+.+||++|++|+-... .|. ......|+++|+++|.||+..+
T Consensus       158 ~~Di~~ad~Il~~G~Np~~~~p~~~~~l~~A~~rGakIIvIdP~~~  203 (574)
T cd02767         158 LEDFEHTDLIFFIGQNPGTNHPRMLHYLREAKKRGGKIIVINPLRE  203 (574)
T ss_pred             HHHHhcCCEEEEEcCChhhhcHHHHHHHHHHHHCCCEEEEECCCcc
Confidence            4567789999999996543 231 1222457789999999999765

These members belong to the molybdopterin_binding (MopB) superfamily of proteins.

>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated

Probab=86.01  E-value=1.8  Score=43.41  Aligned_cols=62  Identities=16%  Similarity=0.113  Sum_probs=43.8

Q ss_pred             HHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC--CccEEEECcHHHHHHH
Q 024533          105 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAG  169 (266)
Q Consensus       105 a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~--~adl~I~g~~~evl~~  169 (266)
                      +.+.+++||++|++|+++.-......   ......++|.||.++.....  ..++.|.+++.++|..
T Consensus       280 ~~~~l~~aD~vl~vG~~l~~~~~~~~---~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~  343 (568)
T PRK07449        280 AAEELLQPDIVIQFGSPPTSKRLLQW---LADCEPEYWVVDPGPGRLDPAHHATRRLTASVATWLEA  343 (568)
T ss_pred             hhhhcCCCCEEEEeCCCCCchhHHHH---HhcCCCCEEEECCCCCcCCCCCCceEEEEEcHHHHHHh
Confidence            44567899999999999853322221   11223488999998876543  4578999999999887

>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]

Probab=84.99  E-value=2.1  Score=44.78  Aligned_cols=95  Identities=22%  Similarity=0.333  Sum_probs=62.5

Q ss_pred             CCCCCCCCCCCCCc----ccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCCh-hh-cccchHHHhc-CCCEEEEE
Q 024533           72 KTPRRCSDVKCGSR----LKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQI-TP-ACNLPLKSLR-GGGKIVIV  144 (266)
Q Consensus        72 ~~~p~Cp~~~Cgg~----lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V-~P-a~~L~~~a~~-~g~~lViI  144 (266)
                      ..+..|.. -|..+    |-++|=.+++.-       ..+.+..+|++|+||+.-+= .| ++..+.+|.+ +|.++|.+
T Consensus       385 NNVDncsR-~CqsPa~~gL~rTvG~g~dsg-------si~dve~ad~vliIG~N~te~HPV~asr~kra~k~~G~KliV~  456 (978)
T COG3383         385 NNVDNCSR-YCQSPATDGLFRTVGSGADSG-------SIEDVEGADLVLIIGANPTEGHPVLASRLKRAHKLRGQKLIVI  456 (978)
T ss_pred             CCcccchh-hccCcccccchheeeccCCCC-------CHHHHhhCCeEEEEcCCCCccCccHHHHHHHHHHhcCCeEEEe
Confidence            34556652 46542    445555454443       25677889999999996432 44 2344455665 99999999


Q ss_pred             CCCCCCCCCCccEEEECcHHH---HHHHHHHHc
Q 024533          145 NLQQTPKDKKASLVVHAPVDK---VIAGVMRHL  174 (266)
Q Consensus       145 N~~~t~~d~~adl~I~g~~~e---vl~~L~~~L  174 (266)
                      .+.++.....+|++++-+.+.   +|..+++.+
T Consensus       457 D~R~~emaerAdlf~~pkpGtd~a~l~Avakyi  489 (978)
T COG3383         457 DPRKHEMAERADLFLHPKPGTDLAWLTAVAKYI  489 (978)
T ss_pred             ccchhHHHHhhhcccCCCCCccHHHHHHHHHHH
Confidence            999999999999999755443   444444443

>cd02768 MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The NuoG/Nad11/75-kDa subunit (second domain) of the NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory complex I/NADH dehydrogenase-1 (NDH-1)

Probab=84.86  E-value=2.6  Score=39.68  Aligned_cols=57  Identities=25%  Similarity=0.281  Sum_probs=39.5

Q ss_pred             HHHhhcCCEEEEEccCCCh-hhc-ccchHHHh-cCCCEEEEECCCCCCCCCCccEEEECcHH
Q 024533          106 EENCRMADVVLCLGTSLQI-TPA-CNLPLKSL-RGGGKIVIVNLQQTPKDKKASLVVHAPVD  164 (266)
Q Consensus       106 ~~~~~~aDLlLvlGTSL~V-~Pa-~~L~~~a~-~~g~~lViIN~~~t~~d~~adl~I~g~~~  164 (266)
                      ...+.++|++|++|+-... .|. ......+. ++|+++|.|++..+..  .+|.++.-...
T Consensus       143 ~~di~~ad~il~~G~n~~~~~p~~~~~~~~a~~~~g~kli~idp~~t~~--~ad~~~~~~pg  202 (386)
T cd02768         143 IAEIEEADAVLLIGSNLRKEAPLLNARLRKAVKKKGAKIAVIGPKDTDL--IADLTYPVSPL  202 (386)
T ss_pred             HHHHhhCCEEEEEcCCcchhchHHHHHHHHHHHcCCCeEEEECCCcccc--ccceEEEcCCc
Confidence            3467799999999997654 332 22223443 4599999999999887  67777764444

The NADH-Q-OR is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The atomic structure of complex I is not known and the mechanisms of electron transfer and proton pumping are not established. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Escherichia coli, this subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the 'minimal' fun

>cd02755 MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins

Probab=84.76  E-value=0.92  Score=44.18  Aligned_cols=53  Identities=21%  Similarity=0.288  Sum_probs=39.6

Q ss_pred             HhhcCCEEEEEccCCChh---hcccchHHHhcCCCEEEEECCCCCCCCCCccEEEE
Q 024533          108 NCRMADVVLCLGTSLQIT---PACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH  160 (266)
Q Consensus       108 ~~~~aDLlLvlGTSL~V~---Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~  160 (266)
                      .+.+||++|++|+-....   |.......++++|+++|.|++..+.....+|.+|.
T Consensus       153 d~~~ad~il~~G~n~~~~~~~~~~~~~~~a~~~g~kiivIdPr~t~ta~~AD~~i~  208 (454)
T cd02755         153 DFENARYIILFGRNLAEAIIVVDARRLMKALENGAKVVVVDPRFSELASKADEWIP  208 (454)
T ss_pred             chhcCCEEEEECcCcccccccHHHHHHHHHHHCCCeEEEECCCCChhhHhhCEecC
Confidence            456899999999976543   21222235677899999999999988778888764

Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Members of the MopB_Thiosulfate-R-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.

>TIGR03479 DMSO_red_II_alp DMSO reductase family type II enzyme, molybdopterin subunit

Probab=84.55  E-value=0.99  Score=48.12  Aligned_cols=62  Identities=18%  Similarity=0.325  Sum_probs=45.1

Q ss_pred             HHHhhcCCEEEEEccCCChh--hcccchHHHhcCCCEEEEECCCCCCCCCCccEEE--ECcHHHHH
Q 024533          106 EENCRMADVVLCLGTSLQIT--PACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVV--HAPVDKVI  167 (266)
Q Consensus       106 ~~~~~~aDLlLvlGTSL~V~--Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I--~g~~~evl  167 (266)
                      ...+.+||++|++|+-....  +.......|+++|+++|.|++..+.....+|++|  +-..|-+|
T Consensus       219 ~~D~~na~~Il~~G~Np~~t~~~~~~~l~~a~~~GaklVvIdPr~t~tA~~AD~wlpirPGTD~AL  284 (912)
T TIGR03479       219 SDDWFNADYIIMWGSNPSVTRIPDAHFLSEARYNGARVVSIAPDYNPSTIHADLWLPVRVGTDAAL  284 (912)
T ss_pred             hhhhhcCcEEEEecCChHHcCCchHHHHHHHHhcCCeEEEECCCCChhhhhCCeecCCCCCcHHHH
Confidence            44567899999999976542  2334444577899999999999999888888875  33444433

This model represents the molybdopterin subunit, typically called the alpha subunit, of various proteins that also contain an iron-sulfur subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase, ethylbenzene dehydrogenase, and an archaeal respiratory nitrate reductase. This alpha subunit has a twin-arginine translocation (TAT) signal for Sec-independent translocation across the plasma membrane.

>cd02763 MopB_2 The MopB_2 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site

Probab=83.80  E-value=2.2  Score=44.24  Aligned_cols=54  Identities=24%  Similarity=0.142  Sum_probs=40.0

Q ss_pred             HHhhcCCEEEEEccCCCh--hhcccchHHHhcCCCEEEEECCCCCCCCCCccEEEE
Q 024533          107 ENCRMADVVLCLGTSLQI--TPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH  160 (266)
Q Consensus       107 ~~~~~aDLlLvlGTSL~V--~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~  160 (266)
                      ..+.+||++|++|+....  .|+..-...++++|+++|.||+..+.....+|.+|.
T Consensus       151 ~D~~~Ad~Ivl~G~n~~~~~~p~~~~i~~ak~~GaKlIvIDPr~t~ta~~AD~wl~  206 (679)
T cd02763         151 PDLEHTKYFMMIGVAEDHHSNPFKIGIQKLKRRGGKFVAVNPVRTGYAAIADEWVP  206 (679)
T ss_pred             hHHHhCCEEEEECCCCcccCchHHHHHHHHHhCCCcEEEEcCcCCcchHhhCeecC
Confidence            467789999999985332  233322335677899999999999988777888764

These members belong to the molybdopterin_binding (MopB) superfamily of proteins

>cd02754 MopB_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite

Probab=83.66  E-value=2  Score=42.90  Aligned_cols=54  Identities=22%  Similarity=0.379  Sum_probs=39.6

Q ss_pred             HHhhcCCEEEEEccCCChh-hc-ccchHHHhcC--CCEEEEECCCCCCCCCCccEEEE
Q 024533          107 ENCRMADVVLCLGTSLQIT-PA-CNLPLKSLRG--GGKIVIVNLQQTPKDKKASLVVH  160 (266)
Q Consensus       107 ~~~~~aDLlLvlGTSL~V~-Pa-~~L~~~a~~~--g~~lViIN~~~t~~d~~adl~I~  160 (266)
                      ..+.+||++|++|+-.... |. ......++++  |+++|.|++..+.....+|.+|.
T Consensus       153 ~Di~~ad~Il~~G~n~~~s~~~~~~~~~~a~~~~~G~klividP~~t~ta~~Ad~~l~  210 (565)
T cd02754         153 DDIEHADCFFLIGSNMAECHPILFRRLLDRKKANPGAKIIVVDPRRTRTADIADLHLP  210 (565)
T ss_pred             HHHhhCCEEEEECCChhhhhhHHHHHHHHHHhcCCCCEEEEEcCCCCcchHHhCeeeC
Confidence            4567999999999986542 21 1222345556  99999999999998777887764

Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.

>PRK09939 putative oxidoreductase; Provisional

Probab=83.48  E-value=1.9  Score=45.20  Aligned_cols=45  Identities=22%  Similarity=0.386  Sum_probs=31.9

Q ss_pred             HHHhhcCCEEEEEccCCCh-hhc-ccchHHHhcCCCEEEEECCCCCC
Q 024533          106 EENCRMADVVLCLGTSLQI-TPA-CNLPLKSLRGGGKIVIVNLQQTP  150 (266)
Q Consensus       106 ~~~~~~aDLlLvlGTSL~V-~Pa-~~L~~~a~~~g~~lViIN~~~t~  150 (266)
                      .+.+.+||++|++|+-... .|. ......++++|+++|.||+-.+.
T Consensus       203 l~Di~~ad~Ili~G~Np~~~hP~~~~~l~~a~~rGakiIvIDPr~~~  249 (759)
T PRK09939        203 LEDFEKCDLVICIGHNPGTNHPRMLTSLRALVKRGAKMIAINPLQER  249 (759)
T ss_pred             HHHHhhCCEEEEeCCChHHHHHHHHHHHHHHHHCCCEEEEECCCCcc
Confidence            3457899999999997544 332 12223467899999999997653

>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria

Probab=83.37  E-value=0.55  Score=30.89  Aligned_cols=34  Identities=29%  Similarity=0.674  Sum_probs=21.7

Q ss_pred             cceeecCCCCcccchhhHHHHhhccCCCCCCCCCCCCC-cc
Q 024533           47 SFREICPSCGVEYMRDFEIETIGMKKTPRRCSDVKCGS-RL   86 (266)
Q Consensus        47 l~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~~Cgg-~l   86 (266)
                      ++..+|.+||+.+..-.   .+.. .....||  .||+ .+
T Consensus         3 ~Yey~C~~Cg~~fe~~~---~~~~-~~~~~CP--~Cg~~~~   37 (42)
T PF09723_consen    3 IYEYRCEECGHEFEVLQ---SISE-DDPVPCP--ECGSTEV   37 (42)
T ss_pred             CEEEEeCCCCCEEEEEE---EcCC-CCCCcCC--CCCCCce
Confidence            35678999998774321   1222 3456798  9998 44

The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>cd02762 MopB_1 The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site

Probab=83.01  E-value=1.2  Score=44.27  Aligned_cols=55  Identities=18%  Similarity=0.186  Sum_probs=40.7

Q ss_pred             HHHhhcCCEEEEEccCCChh-hcc-------cchHHHhcCCCEEEEECCCCCCCCCCccEEEE
Q 024533          106 EENCRMADVVLCLGTSLQIT-PAC-------NLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH  160 (266)
Q Consensus       106 ~~~~~~aDLlLvlGTSL~V~-Pa~-------~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~  160 (266)
                      ...+.+||++|++|+-.... |..       .....++++|+++|.|++..+.....+|.+|.
T Consensus       151 ~~D~~~ad~il~~G~N~~~s~~~~~~~~~~~~~~~~a~~~G~kliviDPr~t~ta~~AD~~l~  213 (539)
T cd02762         151 VPDIDRTDYLLILGANPLQSNGSLRTAPDRVLRLKAAKDRGGSLVVIDPRRTETAKLADEHLF  213 (539)
T ss_pred             chhhhhCCEEEEEecChHhhCCccccccCHHHHHHHHHhCCCEEEEECCCCchhhHhcCEeeC
Confidence            34568899999999976553 211       12334678999999999999988778888764

These members belong to the molybdopterin_binding (MopB) superfamily of proteins.

>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit, archaeal-type

Probab=83.00  E-value=1.9  Score=43.93  Aligned_cols=54  Identities=22%  Similarity=0.380  Sum_probs=39.7

Q ss_pred             HHhhcCCEEEEEccCCChh-hc-ccchHHHhcCCCEEEEECCCCCCCCCCccEEEE
Q 024533          107 ENCRMADVVLCLGTSLQIT-PA-CNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH  160 (266)
Q Consensus       107 ~~~~~aDLlLvlGTSL~V~-Pa-~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~  160 (266)
                      ..+.+||++|++|+-.... |. ......|+++|+++|.|++..+.....+|.+|.
T Consensus       151 ~di~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~klvvidp~~s~ta~~ad~~i~  206 (671)
T TIGR01591       151 SEIENADLIVIIGYNPAESHPVVAQYLKNAKRNGAKIIVIDPRKTETAKIADLHIP  206 (671)
T ss_pred             HHHHhCCEEEEECCChhhccCHHHHHHHHHHHCCCeEEEECCCCChhhHhhCcccC
Confidence            4678899999999975442 21 222345677999999999999887777777663

This model is well-defined, with only a single fragmentary sequence falling between trusted and noise. The alpha subunit of a version of nitrate reductase is closely related.

>TIGR01553 formate-DH-alph formate dehydrogenase, alpha subunit, proteobacterial-type

Probab=82.94  E-value=2.3  Score=45.98  Aligned_cols=54  Identities=17%  Similarity=0.312  Sum_probs=41.0

Q ss_pred             HHhhcCCEEEEEccCCCh-hhc-ccchHHHhcCCCEEEEECCCCCCCCCCccEEEE
Q 024533          107 ENCRMADVVLCLGTSLQI-TPA-CNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH  160 (266)
Q Consensus       107 ~~~~~aDLlLvlGTSL~V-~Pa-~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~  160 (266)
                      ..+.+||++|++|+-... .|. ......|+++|+++|.||+..+.....+|++|.
T Consensus       217 ~Di~~Ad~Ilv~G~Np~es~p~~~~~i~~Ak~~GakiIvIDPR~t~tA~~AD~~l~  272 (1009)
T TIGR01553       217 VDIKNSDLILVMGGNPAENHPIGFKWAIRAKKKGAKIIHIDPRFNRTATVADLYAP  272 (1009)
T ss_pred             HHHHhCCEEEEECCChhhhChHHHHHHHHHHHcCCEEEEEcCCCCchhHhhccEeC
Confidence            457789999999997554 332 223345778999999999999988788887764

This model is well-defined, with a large, unpopulated trusted/noise gap.

>TIGR00509 bisC_fam molybdopterin guanine dinucleotide-containing S/N-oxide reductases

Probab=82.68  E-value=1.5  Score=45.81  Aligned_cols=51  Identities=10%  Similarity=0.068  Sum_probs=38.6

Q ss_pred             hhcCCEEEEEccCCChh----------hcccchHHHhcCCCEEEEECCCCCCCCCCc-cEEE
Q 024533          109 CRMADVVLCLGTSLQIT----------PACNLPLKSLRGGGKIVIVNLQQTPKDKKA-SLVV  159 (266)
Q Consensus       109 ~~~aDLlLvlGTSL~V~----------Pa~~L~~~a~~~g~~lViIN~~~t~~d~~a-dl~I  159 (266)
                      +.+||++|+.|+...+.          +.......++++|+++|.|++..|.....+ |++|
T Consensus       165 ~~~a~~il~~G~Np~~t~~~~~~~~~~~~~~~~~~a~~~G~klIvIDPr~t~tA~~aaD~~l  226 (770)
T TIGR00509       165 LENSKVLVLWGADPLKTSQIAWGIPDHGGYEYLERLKAKGKRVISIDPVRTETAEFFGAEWI  226 (770)
T ss_pred             HhcCCEEEEeCCCHHHhCccccccCCcchHHHHHHHHHcCCEEEEEcCCCCcchhhccCeEe
Confidence            67899999999986553          222333457789999999999999877654 6765

This enzyme family shares sequence similarity and a requirement for a molydenum cofactor as the only prosthetic group. The form of the cofactor is a single molybdenum atom coordinated by two molybdopterin guanine dinucleotide molecules. Members of the family include biotin sulfoxide reductase, dimethylsulfoxide reductase, and trimethylamine-N-oxide reductase, although a single member may show all those activities and related activities; it may not be possible to resolve the primary function for members of this family by sequence comparison alone. A number of similar molybdoproteins in which the N-terminal region contains a CXXXC motif and may bind an iron-sulfur cluster are excluded from this set, including formate dehydrogenases and nitrate reductases. Also excluded is the A chain of a heteromeric, anaerobic DMSO reductase, which also contains the CXXXC motif.

>cd02770 MopB_DmsA-EC This CD (MopB_DmsA-EC) includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes

Probab=82.55  E-value=1.8  Score=44.03  Aligned_cols=55  Identities=15%  Similarity=0.199  Sum_probs=40.7

Q ss_pred             HHHhhcCCEEEEEccCCChhhc-----ccchHHHhcCCCEEEEECCCCCCCCC-CccEEEE
Q 024533          106 EENCRMADVVLCLGTSLQITPA-----CNLPLKSLRGGGKIVIVNLQQTPKDK-KASLVVH  160 (266)
Q Consensus       106 ~~~~~~aDLlLvlGTSL~V~Pa-----~~L~~~a~~~g~~lViIN~~~t~~d~-~adl~I~  160 (266)
                      ...+.+||++|+.|+-....-.     ......|+++|+++|.|++..+.... .+|++|.
T Consensus       161 ~~D~~~a~~ii~wG~N~~~~~~~~~~~~~~~~~a~~~G~klivIDPr~t~tA~~~AD~~i~  221 (617)
T cd02770         161 LDDLKDSKLVVLFGHNPAETRMGGGGSTYYYLQAKKAGAKFIVIDPRYTDTAVTLADEWIP  221 (617)
T ss_pred             HHHHhcCCEEEEECCCHHHhcCCCCchHHHHHHHHHcCCeEEEECCCCCccccccCCEEEC
Confidence            3466789999999997654321     22334577899999999999998774 7887764

Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.

>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein

Probab=82.44  E-value=3.6  Score=31.25  Aligned_cols=44  Identities=25%  Similarity=0.558  Sum_probs=33.8

Q ss_pred             ceeEeeeccCCCCCCCCCceEEEee----cCCCCcchhccccCCCceEEeeec
Q 024533          205 KWALRVGSVHRPKAPSPFVQSVEVS----FSDRPDLKTAILNKQPFKLKRRKQ  253 (266)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  253 (266)
                      +|++-+.+.++. ....++++|+..    |.+ |   -++++++||.+.++.-
T Consensus         3 ~W~v~Vr~~~~~-d~~~~i~kV~f~LHpsF~~-p---~r~v~~pPFevte~GW   50 (84)
T PF03366_consen    3 KWTVYVRGLDNE-DLSYFIKKVTFKLHPSFPN-P---VRVVTKPPFEVTETGW   50 (84)
T ss_dssp             EEEEEEEECCCT---TTTEEEEEEES-TTSSS-----EEECSSTTEEEEEEES
T ss_pred             EEEEEEEeCCCC-CccceEEEEEEECCCCCCC-C---ceEecCCCCEEEEeEe
Confidence            699999999888 589999999985    444 1   3589999999988753

All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.

>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor

Probab=81.84  E-value=1.7  Score=40.41  Aligned_cols=54  Identities=20%  Similarity=0.313  Sum_probs=38.7

Q ss_pred             HHHhhcCCEEEEEccCCChh-hc-ccchHHHhcCCCEEEEECCCCCCCCCCccEEE
Q 024533          106 EENCRMADVVLCLGTSLQIT-PA-CNLPLKSLRGGGKIVIVNLQQTPKDKKASLVV  159 (266)
Q Consensus       106 ~~~~~~aDLlLvlGTSL~V~-Pa-~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I  159 (266)
                      ...+.+||++|++|+-.... |. ......++++|+++|.|++..+.....+|.+|
T Consensus       151 ~~d~~~ad~il~~G~n~~~~~~~~~~~~~~a~~~g~kvv~idp~~s~t~~~ad~~i  206 (374)
T cd00368         151 LADIENADLILLWGSNPAETHPVLAARLRRAKKRGAKLIVIDPRRTETAAKADEWL  206 (374)
T ss_pred             HHHHhhCCEEEEEcCChHHhChHHHHHHHHHHHCCCeEEEEcCCCCcchHhhCEee
Confidence            34567899999999976542 22 22223456789999999999988766677765

The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is

>cd02760 MopB_Phenylacetyl-CoA-OR The MopB_Phenylacetyl-CoA-OR CD contains the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), and other related proteins

Probab=81.17  E-value=3.5  Score=43.29  Aligned_cols=55  Identities=18%  Similarity=0.204  Sum_probs=41.7

Q ss_pred             HHHhhcCCEEEEEccCCChh--h-cccchHHHhcCCCEEEEECCCCCCCCCCccEEEE
Q 024533          106 EENCRMADVVLCLGTSLQIT--P-ACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH  160 (266)
Q Consensus       106 ~~~~~~aDLlLvlGTSL~V~--P-a~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~  160 (266)
                      ...+.+||++|++|+-....  | .......++++|+++|.|++..+.....+|.+|.
T Consensus       168 ~~D~~~ad~Il~~G~Np~~s~~~~~~~~~~~ar~~GaKlIvVDPr~t~ta~~AD~wlp  225 (760)
T cd02760         168 AADTPLANYVISFGSNVEASGGPCAVTRHADARVRGYKRVQVEPHLSVTGACSAEWVP  225 (760)
T ss_pred             cchHhcCCEEEEECCCchHhcCcHHHHHHHHHHHcCCeEEEEcCCCCcchhhcCeEeC
Confidence            34677899999999987543  2 1223345677899999999999998888888864

The phenylacetyl-CoA:acceptor oxidoreductase has been characterized as a membrane-bound molybdenum-iron-sulfur enzyme involved in anaerobic metabolism of phenylalanine in the denitrifying bacterium Thauera aromatica. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.

>TIGR01701 Fdhalpha-like oxidoreductase alpha (molybdopterin) subunit

Probab=80.01  E-value=4.1  Score=42.58  Aligned_cols=45  Identities=18%  Similarity=0.316  Sum_probs=32.0

Q ss_pred             HHHhhcCCEEEEEccCCCh-hhc-ccchHHHhcCCCEEEEECCCCCC
Q 024533          106 EENCRMADVVLCLGTSLQI-TPA-CNLPLKSLRGGGKIVIVNLQQTP  150 (266)
Q Consensus       106 ~~~~~~aDLlLvlGTSL~V-~Pa-~~L~~~a~~~g~~lViIN~~~t~  150 (266)
                      .+.+.+||++|++|+-... .|. ......|+++|+++|.||+-.+.
T Consensus       193 ~~Di~~ad~Il~~G~Np~~~~p~~~~~l~~a~~rGakiIvIdP~~~~  239 (743)
T TIGR01701       193 LEDFEHTDCLVFIGSNAGTNHPRMLKYLYAAKKRGAKIIAINPLRER  239 (743)
T ss_pred             HhHHHhCCEEEEEecCcccccHHHHHHHHHHHHCCCEEEEECCCCcc
Confidence            3467789999999997543 231 12224578899999999997654

This model represents a well-defined clade of oxidoreductase alpha subunits most closely related to a group of formate dehydrogenases including the E. coli FdhH protein (TIGR01591). These alpha subunits contain a molybdopterin cofactor and generally associate with two other subunits which contain iron-sulfur clusters and cytochromes. The particular subunits with which this enzyme interacts and the substrate which is reduced is unknown at this time. In Ralstonia, the gene is associated with the cbb operon, but is not essential for CO2 fixation.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	266
3k35_A	318	Crystal Structure Of Human Sirt6 Length = 318		7e-52
3pki_A	355	Human Sirt6 Crystal Structure In Complex With Adp R		3e-51
1yc5_A	246	Sir2-P53 Peptide-Nicotinamide Length = 246		6e-21
2h4h_A	246	Sir2 H116y Mutant-P53 Peptide-Nad Length = 246		2e-20
2h59_A	246	Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp		8e-20
1ici_A	256	Crystal Structure Of A Sir2 Homolog-Nad Complex Len		8e-19
1m2h_A	249	Sir2 Homologue S24a Mutant-adp Ribose Complex Lengt		1e-18
1m2g_A	249	Sir2 Homologue-Adp Ribose Complex Length = 249		1e-18
1m2n_A	249	Sir2 Homologues (D102gF159AR170A) MUTANT-2'-O-Acety		1e-18
1m2k_A	249	Sir2 Homologue F159a Mutant-Adp Ribose Complex Leng		3e-18
1m2j_A	249	Sir2 Homologue H80n Mutant-Adp Ribose Complex Lengt		6e-18
1ma3_A	253	Structure Of A Sir2 Enzyme Bound To An Acetylated P		5e-17
3jwp_A	265	Crystal Structure Of Plasmodium Falciparum Sir2a (P		2e-13
3u31_A	290	Plasmodium Falciparum Sir2a Preferentially Hydrolyz		4e-13
2b4y_A	271	Crystal Structure Of Human Sirtuin Homolog 5 Length		1e-10
4hda_A	275	Crystal Structure Of Human Sirt5 In Complex With Fl		2e-10
3rig_A	273	Sirt5 Is An Nad-Dependent Protein Lysine Demalonyla		2e-10
4g1c_A	267	Human Sirt5 Bound To Succ-Idh2 And Carba-Nad Length		2e-10
2nyr_A	271	Crystal Structure Of Human Sirtuin Homolog 5 In Com		2e-10
1j8f_A	323	Human Sirt2 Histone Deacetylase Length = 323		2e-10
1j8f_C	323	Human Sirt2 Histone Deacetylase Length = 323		3e-10
4fvt_A	274	Human Sirt3 Bound To Ac-Acs Peptide And Carba-Nad L		3e-08
4hd8_A	284	Crystal Structure Of Human Sirt3 In Complex With Fl		3e-08
3glr_A	285	Crystal Structure Of Human Sirt3 With Acetyl-Lysine		4e-08
1s5p_A	235	Structure And Substrate Binding Properties Of Cobb,		2e-06
2od7_A	308	Crystal Structure Of Yhst2 Bound To The Intermediat		1e-04
1q14_A	361	Structure And Autoregulation Of The Yeast Hst2 Homo		1e-04
1szc_A	297	Structural Basis For Nicotinamide Cleavage And Adp-		1e-04
1q1a_A	289	Structure Of The Yeast Hst2 Protein Deacetylase In		1e-04
1q17_A	300	Structure Of The Yeast Hst2 Protein Deacetylase In		1e-04
2od2_A	308	Crystal Structure Of Yhst2 I117f Mutant Bound To Ca		3e-04

>pdb|3K35|A Chain A, Crystal Structure Of Human Sirt6 Length = 318

Iteration: 1
 Score =  200 bits (509), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 97/186 (52%), Positives = 131/186 (70%), Gaps = 6/186 (3%)
Query: 2   PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
           P+ THMALV+LE+ G+L+F++SQNVD LH+RSG PR+KLAELHGN F E C  C  +Y+R
Sbjct: 91  PTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVR 150
Query: 62  DFEIETIGMKKTPRRCSDVK------CGSRLKDTVLDWEDALPPVEMNPAEENCRMADVV 115
           D  + T+G+K T R C+  K      C   L+DT+LDWED+LP  ++  A+E  R AD+ 
Sbjct: 151 DTVVGTMGLKATGRLCTVAKARGLRACRGELRDTILDWEDSLPDRDLALADEASRNADLS 210
Query: 116 LCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLN 175
           + LGTSLQI P+ NLPL + R GG++VIVNLQ T  D+ A L +H  VD+V+  +M+HL 
Sbjct: 211 ITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEVMTRLMKHLG 270
Query: 176 LWIPPY 181
           L IP +
Sbjct: 271 LEIPAW 276

>pdb|3PKI|A Chain A, Human Sirt6 Crystal Structure In Complex With Adp Ribose Length = 355

Iteration: 1
 Score =  198 bits (503), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 97/186 (52%), Positives = 130/186 (69%), Gaps = 6/186 (3%)
Query: 2   PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
           P+ THMALV+LE+ G+L+F++SQNVD LH+RSG PR+KLAELHGN F E C  C  +Y+R
Sbjct: 91  PTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVR 150
Query: 62  DFEIETIGMKKTPRRCSDVK------CGSRLKDTVLDWEDALPPVEMNPAEENCRMADVV 115
           D  + T+G+K T R C+  K      C   L+DT+LDWED+LP  ++  A+E  R AD+ 
Sbjct: 151 DTVVGTMGLKATGRLCTVAKARGLRACRGELRDTILDWEDSLPDRDLALADEASRNADLS 210
Query: 116 LCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLN 175
           + LGTSLQI P+ NLPL + R GG++VIVNLQ T  D+ A L +H  VD+V+  +M HL 
Sbjct: 211 ITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEVMTRLMEHLG 270
Query: 176 LWIPPY 181
           L IP +
Sbjct: 271 LEIPAW 276

>pdb|1YC5|A Chain A, Sir2-P53 Peptide-Nicotinamide Length = 246

Iteration: 1
 Score = 97.8 bits (242), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 57/156 (36%), Positives = 91/156 (58%), Gaps = 5/156 (3%)
Query: 2   PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
           P++ H+ L +LE+ G+++ VI+QN+D LH R+G   +K+ ELHGN     C  C  +Y  
Sbjct: 76  PNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAG--SKKVIELHGNVEEYYCVRCEKKYTV 133
Query: 62  DFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTS 121
           +  I+ +     P  C D  C S ++  ++ + + LP   +  A      A +++ LG+S
Sbjct: 134 EDVIKKLESSDVPL-CDD--CNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSS 190
Query: 122 LQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASL 157
           L + PA  LPL ++R GGK+VIVNL +TP D  A+L
Sbjct: 191 LVVYPAAELPLITVRSGGKLVIVNLGETPFDDIATL 226

>pdb|2H4H|A Chain A, Sir2 H116y Mutant-P53 Peptide-Nad Length = 246

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 96/172 (55%), Gaps = 5/172 (2%)
Query: 2   PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
           P++ H+ L +LE+ G+++ VI+QN+D LH R+G   +K+ EL+GN     C  C  +Y  
Sbjct: 76  PNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAG--SKKVIELYGNVEEYYCVRCEKKYTV 133
Query: 62  DFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTS 121
           +  I+ +     P  C D  C S ++  ++ + + LP   +  A      A +++ LG+S
Sbjct: 134 EDVIKKLESSDVPL-CDD--CNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSS 190
Query: 122 LQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRH 173
           L + PA  LPL ++R GGK+VIVNL +TP D  A+L  +  V +    VM  
Sbjct: 191 LVVYPAAELPLITVRSGGKLVIVNLGETPFDDIATLKYNMDVVEFARRVMEE 242

>pdb|2H59|A Chain A, Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp Ribose Length = 246

Iteration: 1
 Score = 94.0 bits (232), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 95/172 (55%), Gaps = 5/172 (2%)
Query: 2   PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
           P++ H+ L +LE+ G+++ VI+QN+D LH R+G   +K+ EL GN     C  C  +Y  
Sbjct: 76  PNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAG--SKKVIELAGNVEEYYCVRCEKKYTV 133
Query: 62  DFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTS 121
           +  I+ +     P  C D  C S ++  ++ + + LP   +  A      A +++ LG+S
Sbjct: 134 EDVIKKLESSDVPL-CDD--CNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSS 190
Query: 122 LQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRH 173
           L + PA  LPL ++R GGK+VIVNL +TP D  A+L  +  V +    VM  
Sbjct: 191 LVVYPAAELPLITVRSGGKLVIVNLGETPFDDIATLKYNMDVVEFARRVMEE 242

>pdb|1ICI|A Chain A, Crystal Structure Of A Sir2 Homolog-Nad Complex Length = 256

Iteration: 1
 Score = 90.5 bits (223), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 59/173 (34%), Positives = 90/173 (52%), Gaps = 8/173 (4%)
Query: 2   PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
           P+  H A  ELE+ G+LK +I+QNVD LH R+G     +  LHG+     C SC      
Sbjct: 87  PNKAHQAFAELERLGVLKCLITQNVDDLHERAG--SRNVIHLHGSLRVVRCTSCN----N 140
Query: 62  DFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTS 121
            FE+E+        +C   KCGS L+  V+ + + LPP  ++ A      ADV++  GTS
Sbjct: 141 SFEVESAPKIPPLPKCD--KCGSLLRPGVVWFGEMLPPDVLDRAMREVERADVIIVAGTS 198
Query: 122 LQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHL 174
             + PA +LPL   + GG I+ +N  +TP    A   +     +V+  ++RH+
Sbjct: 199 AVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELVRHV 251

>pdb|1M2H|A Chain A, Sir2 Homologue S24a Mutant-adp Ribose Complex Length = 249

Iteration: 1
 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/173 (34%), Positives = 90/173 (52%), Gaps = 8/173 (4%)
Query: 2   PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
           P+  H A  ELE+ G+LK +I+QNVD LH R+G     +  LHG+     C SC      
Sbjct: 76  PNKAHQAFAELERLGVLKCLITQNVDDLHERAG--SRNVIHLHGSLRVVRCTSCN----N 129
Query: 62  DFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTS 121
            FE+E+        +C   KCGS L+  V+ + + LPP  ++ A      ADV++  GTS
Sbjct: 130 SFEVESAPKIPPLPKCD--KCGSLLRPGVVWFGEMLPPDVLDRAMREVERADVIIVAGTS 187
Query: 122 LQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHL 174
             + PA +LPL   + GG I+ +N  +TP    A   +     +V+  ++RH+
Sbjct: 188 AVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELVRHV 240

>pdb|1M2G|A Chain A, Sir2 Homologue-Adp Ribose Complex Length = 249

Iteration: 1
 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/173 (34%), Positives = 90/173 (52%), Gaps = 8/173 (4%)
Query: 2   PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
           P+  H A  ELE+ G+LK +I+QNVD LH R+G     +  LHG+     C SC      
Sbjct: 76  PNKAHQAFAELERLGVLKCLITQNVDDLHERAG--SRNVIHLHGSLRVVRCTSCN----N 129
Query: 62  DFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTS 121
            FE+E+        +C   KCGS L+  V+ + + LPP  ++ A      ADV++  GTS
Sbjct: 130 SFEVESAPKIPPLPKCD--KCGSLLRPGVVWFGEMLPPDVLDRAMREVERADVIIVAGTS 187
Query: 122 LQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHL 174
             + PA +LPL   + GG I+ +N  +TP    A   +     +V+  ++RH+
Sbjct: 188 AVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELVRHV 240

>pdb|1M2N|A Chain A, Sir2 Homologues (D102gF159AR170A) MUTANT-2'-O-Acetyl Adp Ribose Complex Length = 249

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/173 (34%), Positives = 89/173 (51%), Gaps = 8/173 (4%)
Query: 2   PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
           P+  H A  ELE+ G+LK +I+QNVD LH R+G     +  LHG+     C SC      
Sbjct: 76  PNKAHQAFAELERLGVLKCLITQNVDGLHERAG--SRNVIHLHGSLRVVRCTSCN----N 129
Query: 62  DFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTS 121
            FE+E+        +C   KCGS L+  V+   + LPP  ++ A      ADV++  GTS
Sbjct: 130 SFEVESAPKIPPLPKCD--KCGSLLRPGVVWAGEMLPPDVLDAAMREVERADVIIVAGTS 187
Query: 122 LQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHL 174
             + PA +LPL   + GG I+ +N  +TP    A   +     +V+  ++RH+
Sbjct: 188 AVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELVRHV 240

>pdb|1M2K|A Chain A, Sir2 Homologue F159a Mutant-Adp Ribose Complex Length = 249

Iteration: 1
 Score = 89.0 bits (219), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/173 (34%), Positives = 89/173 (51%), Gaps = 8/173 (4%)
Query: 2   PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
           P+  H A  ELE+ G+LK +I+QNVD LH R+G     +  LHG+     C SC      
Sbjct: 76  PNKAHQAFAELERLGVLKCLITQNVDDLHERAG--SRNVIHLHGSLRVVRCTSCN----N 129
Query: 62  DFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTS 121
            FE+E+        +C   KCGS L+  V+   + LPP  ++ A      ADV++  GTS
Sbjct: 130 SFEVESAPKIPPLPKCD--KCGSLLRPGVVWAGEMLPPDVLDRAMREVERADVIIVAGTS 187
Query: 122 LQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHL 174
             + PA +LPL   + GG I+ +N  +TP    A   +     +V+  ++RH+
Sbjct: 188 AVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELVRHV 240

>pdb|1M2J|A Chain A, Sir2 Homologue H80n Mutant-Adp Ribose Complex Length = 249

Iteration: 1
 Score = 87.8 bits (216), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 90/173 (52%), Gaps = 8/173 (4%)
Query: 2   PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
           P+  + A  ELE+ G+LK +I+QNVD LH R+G     +  LHG+     C SC      
Sbjct: 76  PNKANQAFAELERLGVLKCLITQNVDDLHERAG--SRNVIHLHGSLRVVRCTSCN----N 129
Query: 62  DFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTS 121
            FE+E+        +C   KCGS L+  V+ + + LPP  ++ A      ADV++  GTS
Sbjct: 130 SFEVESAPKIPPLPKCD--KCGSLLRPGVVWFGEMLPPDVLDRAMREVERADVIIVAGTS 187
Query: 122 LQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHL 174
             + PA +LPL   + GG I+ +N  +TP    A   +     +V+  ++RH+
Sbjct: 188 AVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELVRHV 240

>pdb|1MA3|A Chain A, Structure Of A Sir2 Enzyme Bound To An Acetylated P53 Peptide Length = 253

Iteration: 1
 Score = 84.7 bits (208), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 82/152 (53%), Gaps = 6/152 (3%)
Query: 2   PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
           P+  H A+ ELE+ GI+K VI+QN+D LH R+G  R  + ELHG+  +  C  C   Y  
Sbjct: 78  PNPAHYAIAELERMGIVKAVITQNIDMLHQRAGSRR--VLELHGSMDKLDCLDCHETYDW 135
Query: 62  DFEIETIGMKKTPRRCSDVKCGS-RLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGT 120
              +E     + P RC   KCGS  +K  V+ + + LP   +  A E  +  D  + +G+
Sbjct: 136 SEFVEDFNKGEIP-RCR--KCGSYYVKPRVVLFGEPLPQRTLFEAIEEAKHCDAFMVVGS 192
Query: 121 SLQITPACNLPLKSLRGGGKIVIVNLQQTPKD 152
           SL + PA  LP  + + G K++IVN + T  D
Sbjct: 193 SLVVYPAAELPYIAKKAGAKMIIVNAEPTMAD 224

>pdb|3JWP|A Chain A, Crystal Structure Of Plasmodium Falciparum Sir2a (Pf13_0152) In Complex With Amp Length = 265

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 78/158 (49%), Gaps = 16/158 (10%)
Query: 6   HMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEI 65
           H+AL  LE  G LK V++QNVD LH  SG    K+  LHGN F  +C +C     +  ++
Sbjct: 88  HVALSTLESLGYLKSVVTQNVDGLHEASG--NTKVISLHGNVFEAVCCTCN----KIVKL 141
Query: 66  ETIGMKKT-------PRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCL 118
             I ++KT       P  C    CG   K  ++ + + +    +  AEE     D++L +
Sbjct: 142 NKIXLQKTSHFXHQLPPECP---CGGIFKPNIILFGEVVSSDLLKEAEEEIAKCDLLLVI 198
Query: 119 GTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKAS 156
           GTS  ++ A NL   + +   KIV +N+ +T    K S
Sbjct: 199 GTSSTVSTATNLCHFACKKKKKIVEINISKTYITNKXS 236

>pdb|3U31|A Chain A, Plasmodium Falciparum Sir2a Preferentially Hydrolyzes Medium And Long Chain Fatty Acyl Lysine Length = 290

Iteration: 1
 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 77/155 (49%), Gaps = 10/155 (6%)
Query: 6   HMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEI 65
           H+AL  LE  G LK V++QNVD LH  SG    K+  LHGN F  +C +C     +  ++
Sbjct: 113 HVALSTLESLGYLKSVVTQNVDGLHEASG--NTKVISLHGNVFEAVCCTCN----KIVKL 166
Query: 66  ETIGMKKTPRRCS----DVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTS 121
             I ++KT         +  CG   K  ++ + + +    +  AEE     D++L +GTS
Sbjct: 167 NKIMLQKTSHFMHQLPPECPCGGIFKPNIILFGEVVSSDLLKEAEEEIAKCDLLLVIGTS 226
Query: 122 LQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKAS 156
             ++ A NL   + +   KIV +N+ +T    K S
Sbjct: 227 STVSTATNLCHFACKKKKKIVEINISKTYITNKMS 261

>pdb|2B4Y|A Chain A, Crystal Structure Of Human Sirtuin Homolog 5 Length = 271

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 75/186 (40%), Gaps = 22/186 (11%)
Query: 2   PSITHMALVELE----KAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGV 57
           P+  H A+ E E    K G    VI+QN+D LH ++G   + L E+HG+ F+  C SCGV
Sbjct: 83  PNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGT--KNLLEIHGSLFKTRCTSCGV 140
Query: 58  --EYMRDFEIETIGMKKTPR--------------RCSDVKCGSRLKDTVLDWEDALPPVE 101
             E  +      +  K  P               RC +  CG  L+  V+ + + L P  
Sbjct: 141 VAENYKSPICPALSGKGAPEPGTQDASIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAI 200
Query: 102 MNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHA 161
           +   +      D+ L +GTS  + PA     +    G  +   N + TP   +       
Sbjct: 201 LEEVDRELAHCDLCLVVGTSSVVYPAAXFAPQVAARGVPVAEFNTETTPATNRFRFHFQG 260
Query: 162 PVDKVI 167
           P    +
Sbjct: 261 PCGTTL 266

>pdb|4HDA|A Chain A, Crystal Structure Of Human Sirt5 In Complex With Fluor-de-lys Peptide And Resveratrol Length = 275

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 75/186 (40%), Gaps = 22/186 (11%)
Query: 2   PSITHMALVELE----KAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGV 57
           P+  H A+ E E    K G    VI+QN+D LH ++G   + L E+HG+ F+  C SCGV
Sbjct: 87  PNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGT--KNLLEIHGSLFKTRCTSCGV 144
Query: 58  --EYMRDFEIETIGMKKTPR--------------RCSDVKCGSRLKDTVLDWEDALPPVE 101
             E  +      +  K  P               RC +  CG  L+  V+ + + L P  
Sbjct: 145 VAENYKSPICPALSGKGAPEPGTQDASIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAI 204
Query: 102 MNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHA 161
           +   +      D+ L +GTS  + PA     +    G  +   N + TP   +       
Sbjct: 205 LEEVDRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNTETTPATNRFRFHFQG 264
Query: 162 PVDKVI 167
           P    +
Sbjct: 265 PCGTTL 270

>pdb|3RIG|A Chain A, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And Desuccinylase Length = 273

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 75/186 (40%), Gaps = 22/186 (11%)
Query: 2   PSITHMALVELE----KAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGV 57
           P+  H A+ E E    K G    VI+QN+D LH ++G   + L E+HG+ F+  C SCGV
Sbjct: 85  PNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGT--KNLLEIHGSLFKTRCTSCGV 142
Query: 58  --EYMRDFEIETIGMKKTPR--------------RCSDVKCGSRLKDTVLDWEDALPPVE 101
             E  +      +  K  P               RC +  CG  L+  V+ + + L P  
Sbjct: 143 VAENYKSPICPALSGKGAPEPGTQDASIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAI 202
Query: 102 MNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHA 161
           +   +      D+ L +GTS  + PA     +    G  +   N + TP   +       
Sbjct: 203 LEEVDRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNTETTPATNRFRFHFQG 262
Query: 162 PVDKVI 167
           P    +
Sbjct: 263 PCGTTL 268

>pdb|4G1C|A Chain A, Human Sirt5 Bound To Succ-Idh2 And Carba-Nad Length = 267

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 75/186 (40%), Gaps = 22/186 (11%)
Query: 2   PSITHMALVELE----KAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGV 57
           P+  H A+ E E    K G    VI+QN+D LH ++G   + L E+HG+ F+  C SCGV
Sbjct: 79  PNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGT--KNLLEIHGSLFKTRCTSCGV 136
Query: 58  --EYMRDFEIETIGMKKTPR--------------RCSDVKCGSRLKDTVLDWEDALPPVE 101
             E  +      +  K  P               RC +  CG  L+  V+ + + L P  
Sbjct: 137 VAENYKSPICPALSGKGAPEPGTQDASIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAI 196
Query: 102 MNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHA 161
           +   +      D+ L +GTS  + PA     +    G  +   N + TP   +       
Sbjct: 197 LEEVDRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNTETTPATNRFRFHFQG 256
Query: 162 PVDKVI 167
           P    +
Sbjct: 257 PCGTTL 262

>pdb|2NYR|A Chain A, Crystal Structure Of Human Sirtuin Homolog 5 In Complex With Suramin Length = 271

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 75/186 (40%), Gaps = 22/186 (11%)
Query: 2   PSITHMALVELE----KAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGV 57
           P+  H A+ E E    K G    VI+QN+D LH ++G   + L E+HG+ F+  C SCGV
Sbjct: 83  PNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGT--KNLLEIHGSLFKTRCTSCGV 140
Query: 58  --EYMRDFEIETIGMKKTPR--------------RCSDVKCGSRLKDTVLDWEDALPPVE 101
             E  +      +  K  P               RC +  CG  L+  V+ + + L P  
Sbjct: 141 VAENYKSPICPALSGKGAPEPGTQDASIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAI 200
Query: 102 MNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHA 161
           +   +      D+ L +GTS  + PA     +    G  +   N + TP   +       
Sbjct: 201 LEEVDRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNTETTPATNRFRFHFQG 260
Query: 162 PVDKVI 167
           P    +
Sbjct: 261 PCGTTL 266

>pdb|1J8F|A Chain A, Human Sirt2 Histone Deacetylase Length = 323

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 69/131 (52%), Gaps = 5/131 (3%)
Query: 2   PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREIC--PSCGVEY 59
           P+I H  +  L+  G+L    +QN+D+L   +G+ +E L E HG  +   C   SC  EY
Sbjct: 112 PTICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLEQEDLVEAHGTFYTSHCVSASCRHEY 171
Query: 60  MRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLG 119
              +  E I  + TP +C D  C S +K  ++ + ++LP    +  + +    D++L +G
Sbjct: 172 PLSWMKEKIFSEVTP-KCED--CQSLVKPDIVFFGESLPARFFSCMQSDFLKVDLLLVMG 228
Query: 120 TSLQITPACNL 130
           TSLQ+ P  +L
Sbjct: 229 TSLQVQPFASL 239

>pdb|1J8F|C Chain C, Human Sirt2 Histone Deacetylase Length = 323

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 69/131 (52%), Gaps = 5/131 (3%)
Query: 2   PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREIC--PSCGVEY 59
           P+I H  +  L+  G+L    +QN+D+L   +G+ +E L E HG  +   C   SC  EY
Sbjct: 112 PTICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLEQEDLVEAHGTFYTSHCVSASCRHEY 171
Query: 60  MRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLG 119
              +  E I  + TP +C D  C S +K  ++ + ++LP    +  + +    D++L +G
Sbjct: 172 PLSWMKEKIFSEVTP-KCED--CQSLVKPDIVFFGESLPARFFSCMQSDFLKVDLLLVMG 228
Query: 120 TSLQITPACNL 130
           TSLQ+ P  +L
Sbjct: 229 TSLQVQPFASL 239

>pdb|4FVT|A Chain A, Human Sirt3 Bound To Ac-Acs Peptide And Carba-Nad Length = 274

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 62/132 (46%), Gaps = 10/132 (7%)
Query: 2   PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
           P++TH  L  L   G+L  + +QN+D L   SGIP  KL E HG      C  C     R
Sbjct: 85  PNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCTVC----QR 140
Query: 62  DFEIETIG---MKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCL 118
            F  E I    M     RC    C   +K  ++ + + LP   +     +  MAD++L L
Sbjct: 141 PFPGEDIRADVMADRVPRCP--VCTGVVKPDIVFFGEPLPQRFLLHV-VDFPMADLLLIL 197
Query: 119 GTSLQITPACNL 130
           GTSL++ P  +L
Sbjct: 198 GTSLEVEPFASL 209

>pdb|4HD8|A Chain A, Crystal Structure Of Human Sirt3 In Complex With Fluor-de-lys Peptide And Piceatannol Length = 284

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 62/132 (46%), Gaps = 10/132 (7%)
Query: 2   PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
           P++TH  L  L   G+L  + +QN+D L   SGIP  KL E HG      C  C     R
Sbjct: 91  PNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCTVC----QR 146
Query: 62  DFEIETIG---MKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCL 118
            F  E I    M     RC    C   +K  ++ + + LP   +     +  MAD++L L
Sbjct: 147 PFPGEDIRADVMADRVPRCP--VCTGVVKPDIVFFGEPLPQRFLLHV-VDFPMADLLLIL 203
Query: 119 GTSLQITPACNL 130
           GTSL++ P  +L
Sbjct: 204 GTSLEVEPFASL 215

>pdb|3GLR|A Chain A, Crystal Structure Of Human Sirt3 With Acetyl-Lysine Acecs2 Peptide Length = 285

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 62/132 (46%), Gaps = 10/132 (7%)
Query: 2   PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
           P++TH  L  L   G+L  + +QN+D L   SGIP  KL E HG      C  C     R
Sbjct: 92  PNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCTVC----QR 147
Query: 62  DFEIETIG---MKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCL 118
            F  E I    M     RC    C   +K  ++ + + LP   +     +  MAD++L L
Sbjct: 148 PFPGEDIRADVMADRVPRCP--VCTGVVKPDIVFFGEPLPQRFLLHV-VDFPMADLLLIL 204
Query: 119 GTSLQITPACNL 130
           GTSL++ P  +L
Sbjct: 205 GTSLEVEPFASL 216

>pdb|1S5P|A Chain A, Structure And Substrate Binding Properties Of Cobb, A Sir2 Homolog Protein Deacetylase From Eschericia Coli Length = 235

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 78/169 (46%), Gaps = 15/169 (8%)
Query: 2   PSITHMALVELEKA-GILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCG--VE 58
           P+  H+AL +L+ A G    +++QN+D+LH R+G     +  +HG   +  C   G  ++
Sbjct: 67  PNAAHLALAKLQDALGDRFLLVTQNIDNLHERAG--NTNVIHMHGELLKVRCSQSGQVLD 124
Query: 59  YMRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCL 118
           +  D   E         +C   +  + L+  V+ W   +P + M+       MAD+ + +
Sbjct: 125 WTGDVTPED--------KCHCCQFPAPLRPHVV-WFGEMP-LGMDEIYMALSMADIFIAI 174
Query: 119 GTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVI 167
           GTS  + PA     ++   G   V +NL+ +    + +   + P  +V+
Sbjct: 175 GTSGHVYPAAGFVHEAKLHGAHTVELNLEPSQVGNEFAEKYYGPASQVV 223

>pdb|2OD7|A Chain A, Crystal Structure Of Yhst2 Bound To The Intermediate Analogue Adp-Hpd, And And Aceylated H4 Peptide Length = 308

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 86/194 (44%), Gaps = 24/194 (12%)
Query: 2   PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
           PS  H  L   +   +LK V +QN+D+L  ++G+  + + E HG+     C  CG  Y  
Sbjct: 107 PSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPP 166
Query: 62  DFEIETIGMK--KTPRRCSDVKCGSRLKDTVL----DWEDALPPVEMNPAE---ENCRMA 112
                 +     K   +C DV CG  +K  ++    D  D+     +N +E   E    +
Sbjct: 167 QVFKSKLAEHPIKDFVKC-DV-CGELVKPAIVFFGEDLPDSFSETWLNDSEWLREKITTS 224
Query: 113 D------VVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKAS-----LVVHA 161
                  +V+ +GTSL + P  +LP +  R   K V+ NL +T  D KA+     L+VH 
Sbjct: 225 GKHPQQPLVIVVGTSLAVYPFASLPEEIPR-KVKRVLCNL-ETVGDFKANKRPTDLIVHQ 282
Query: 162 PVDKVIAGVMRHLN 175
             D+    ++  L 
Sbjct: 283 YSDEFAEQLVEELG 296

>pdb|1Q14|A Chain A, Structure And Autoregulation Of The Yeast Hst2 Homolog Of Sir2 Length = 361

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 90/203 (44%), Gaps = 25/203 (12%)
Query: 2   PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
           PS  H  L   +   +LK V +QN+D+L  ++G+  + + E HG+     C  CG  Y  
Sbjct: 97  PSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPP 156
Query: 62  DFEIETIGMK--KTPRRCSDVKCGSRLKDTVL----DWEDALPPVEMNPAE---ENCRMA 112
                 +     K   +C DV CG  +K  ++    D  D+     +N +E   E    +
Sbjct: 157 QVFKSKLAEHPIKDFVKC-DV-CGELVKPAIVFFGEDLPDSFSETWLNDSEWLREKITTS 214
Query: 113 D------VVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKAS-----LVVHA 161
                  +V+ +GTSL + P  +LP +  R   K V+ NL +T  D KA+     L+VH 
Sbjct: 215 GKHPQQPLVIVVGTSLAVYPFASLPEEIPR-KVKRVLCNL-ETVGDFKANKRPTDLIVHQ 272
Query: 162 PVDKVIAGVMRHLNLWIPPYVRV 184
             D+    ++  L  W   + ++
Sbjct: 273 YSDEFAEQLVEELG-WQEDFEKI 294

>pdb|1SZC|A Chain A, Structural Basis For Nicotinamide Cleavage And Adp-Ribose Transfer By Nad+-Dependent Sir2 HistonePROTEIN DEACETYLASES Length = 297

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 86/194 (44%), Gaps = 24/194 (12%)
Query: 2   PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
           PS  H  L   +   +LK V +QN+D+L  ++G+  + + E HG+     C  CG  Y  
Sbjct: 96  PSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPP 155
Query: 62  DFEIETIGMK--KTPRRCSDVKCGSRLKDTVL----DWEDALPPVEMNPAE---ENCRMA 112
                 +     K   +C DV CG  +K  ++    D  D+     +N +E   E    +
Sbjct: 156 QVFKSKLAEHPIKDFVKC-DV-CGELVKPAIVFFGEDLPDSFSETWLNDSEWLREKITTS 213
Query: 113 D------VVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKAS-----LVVHA 161
                  +V+ +GTSL + P  +LP +  R   K V+ NL +T  D KA+     L+VH 
Sbjct: 214 GKHPQQPLVIVVGTSLAVYPFASLPEEIPR-KVKRVLCNL-ETVGDFKANKRPTDLIVHQ 271
Query: 162 PVDKVIAGVMRHLN 175
             D+    ++  L 
Sbjct: 272 YSDEFAEQLVEELG 285

>pdb|1Q1A|A Chain A, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide Length = 289

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 86/194 (44%), Gaps = 24/194 (12%)
Query: 2   PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
           PS  H  L   +   +LK V +QN+D+L  ++G+  + + E HG+     C  CG  Y  
Sbjct: 89  PSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPP 148
Query: 62  DFEIETIGMK--KTPRRCSDVKCGSRLKDTVL----DWEDALPPVEMNPAE---ENCRMA 112
                 +     K   +C DV CG  +K  ++    D  D+     +N +E   E    +
Sbjct: 149 QVFKSKLAEHPIKDFVKC-DV-CGELVKPAIVFFGEDLPDSFSETWLNDSEWLREKITTS 206
Query: 113 D------VVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKAS-----LVVHA 161
                  +V+ +GTSL + P  +LP +  R   K V+ NL +T  D KA+     L+VH 
Sbjct: 207 GKHPQQPLVIVVGTSLAVYPFASLPEEIPR-KVKRVLCNL-ETVGDFKANKRPTDLIVHQ 264
Query: 162 PVDKVIAGVMRHLN 175
             D+    ++  L 
Sbjct: 265 YSDEFAEQLVEELG 278

>pdb|1Q17|A Chain A, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide Length = 300

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 86/194 (44%), Gaps = 24/194 (12%)
Query: 2   PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
           PS  H  L   +   +LK V +QN+D+L  ++G+  + + E HG+     C  CG  Y  
Sbjct: 99  PSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPP 158
Query: 62  DFEIETIGMK--KTPRRCSDVKCGSRLKDTVL----DWEDALPPVEMNPAE---ENCRMA 112
                 +     K   +C DV CG  +K  ++    D  D+     +N +E   E    +
Sbjct: 159 QVFKSKLAEHPIKDFVKC-DV-CGELVKPAIVFFGEDLPDSFSETWLNDSEWLREKITTS 216
Query: 113 D------VVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKAS-----LVVHA 161
                  +V+ +GTSL + P  +LP +  R   K V+ NL +T  D KA+     L+VH 
Sbjct: 217 GKHPQQPLVIVVGTSLAVYPFASLPEEIPR-KVKRVLCNL-ETVGDFKANKRPTDLIVHQ 274
Query: 162 PVDKVIAGVMRHLN 175
             D+    ++  L 
Sbjct: 275 YSDEFAEQLVEELG 288

>pdb|2OD2|A Chain A, Crystal Structure Of Yhst2 I117f Mutant Bound To Carba-Nad+ And An Acetylated H4 Peptide Length = 308

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 85/194 (43%), Gaps = 24/194 (12%)
Query: 2   PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
           PS  H  L   +   +LK V +QN D+L  ++G+  + + E HG+     C  CG  Y  
Sbjct: 107 PSKFHYLLKLFQDKDVLKRVYTQNFDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPP 166
Query: 62  DFEIETIGMK--KTPRRCSDVKCGSRLKDTVL----DWEDALPPVEMNPAE---ENCRMA 112
                 +     K   +C DV CG  +K  ++    D  D+     +N +E   E    +
Sbjct: 167 QVFKSKLAEHPIKDFVKC-DV-CGELVKPAIVFFGEDLPDSFSETWLNDSEWLREKITTS 224
Query: 113 D------VVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKAS-----LVVHA 161
                  +V+ +GTSL + P  +LP +  R   K V+ NL +T  D KA+     L+VH 
Sbjct: 225 GKHPQQPLVIVVGTSLAVYPFASLPEEIPR-KVKRVLCNL-ETVGDFKANKRPTDLIVHQ 282
Query: 162 PVDKVIAGVMRHLN 175
             D+    ++  L 
Sbjct: 283 YSDEFAEQLVEELG 296

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	266
3pki_A	355	NAD-dependent deacetylase sirtuin-6; ADP ribose, s	1e-81
3k35_A	318	NAD-dependent deacetylase sirtuin-6; rossmann fold	2e-81
1yc5_A	246	NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM,	2e-63
1q1a_A	289	HST2 protein; ternary complex, histone deacetylase	1e-45
1q14_A	361	HST2 protein; histone deacetylase, hydrolase; 2.50	3e-45
1ma3_A	253	SIR2-AF2, transcriptional regulatory protein, SIR2	3e-43
1m2k_A	249	Silent information regulator 2; protein-ligand com	1e-42
3u31_A	290	SIR2A, transcriptional regulatory protein SIR2 hom	3e-42
1j8f_A	323	SIRT2, sirtuin 2, isoform 1, silencing INFO; gene	1e-37
3riy_A	273	NAD-dependent deacetylase sirtuin-5; desuccinylase	1e-37
3glr_A	285	NAD-dependent deacetylase sirtuin-3, mitochondria;	2e-37
1s5p_A	235	NAD-dependent deacetylase; protein deacetylase, SI	3e-36
2hjh_A	354	NAD-dependent histone deacetylase SIR2; protein, s	7e-35
3k1f_M	197	Transcription initiation factor IIB; RNA polymeras	5e-04

>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural genomics, structural genomics consortium, SGC, hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A* Length = 355

 Score =  248 bits (634), Expect = 1e-81
 Identities = 106/250 (42%), Positives = 145/250 (58%), Gaps = 10/250 (4%)

Query: 2   PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
           P+ THMALV+LE+ G+L+F++SQNVD LH+RSG PR+KLAELHGN F E C  C  +Y+R
Sbjct: 91  PTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVR 150

Query: 62  DFEIETIGMKKTPRRCSDVK------CGSRLKDTVLDWEDALPPVEMNPAEENCRMADVV 115
           D  + T+G+K T R C+  K      C   L+DT+LDWED+LP  ++  A+E  R AD+ 
Sbjct: 151 DTVVGTMGLKATGRLCTVAKARGLRACRGELRDTILDWEDSLPDRDLALADEASRNADLS 210

Query: 116 LCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLN 175
           + LGTSLQI P+ NLPL + R GG++VIVNLQ T  D+ A L +H  VD+V+  +M HL 
Sbjct: 211 ITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEVMTRLMEHLG 270

Query: 176 LWIPPYVRVDLFQINLDQYSRPSRSDKYVKWALRVGSVHRPKAPSPFVQSVEVSFSDRPD 235
           L IP +    + +  L    RP       K   +  S  R     P     E        
Sbjct: 271 LEIPAWDGPRVLERALPPLPRPPTP----KLEPKEESPTRINGSIPAGPKQEPCAQHNGS 326

Query: 236 LKTAILNKQP 245
              +   ++P
Sbjct: 327 EPASPKRERP 336

>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens} Length = 318

 Score =  246 bits (631), Expect = 2e-81
 Identities = 99/207 (47%), Positives = 135/207 (65%), Gaps = 6/207 (2%)

Query: 2   PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
           P+ THMALV+LE+ G+L+F++SQNVD LH+RSG PR+KLAELHGN F E C  C  +Y+R
Sbjct: 91  PTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVR 150

Query: 62  DFEIETIGMKKTPRRCSDV------KCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVV 115
           D  + T+G+K T R C+         C   L+DT+LDWED+LP  ++  A+E  R AD+ 
Sbjct: 151 DTVVGTMGLKATGRLCTVAKARGLRACRGELRDTILDWEDSLPDRDLALADEASRNADLS 210

Query: 116 LCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLN 175
           + LGTSLQI P+ NLPL + R GG++VIVNLQ T  D+ A L +H  VD+V+  +M+HL 
Sbjct: 211 ITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEVMTRLMKHLG 270

Query: 176 LWIPPYVRVDLFQINLDQYSRPSRSDK 202
           L IP +    + +  L    RP     
Sbjct: 271 LEIPAWDGPRVLERALPPLPRPPTPKL 297

>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A* Length = 246

 Score =  198 bits (505), Expect = 2e-63
 Identities = 59/175 (33%), Positives = 96/175 (54%), Gaps = 5/175 (2%)

Query: 2   PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
           P++ H+ L +LE+ G+++ VI+QN+D LH R+G   +K+ ELHGN     C  C  +Y  
Sbjct: 76  PNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGS--KKVIELHGNVEEYYCVRCEKKYTV 133

Query: 62  DFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTS 121
           +  I+ +     P  C    C S ++  ++ + + LP   +  A      A +++ LG+S
Sbjct: 134 EDVIKKLESSDVPL-CD--DCNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSS 190

Query: 122 LQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLNL 176
           L + PA  LPL ++R GGK+VIVNL +TP D  A+L  +  V +    VM    +
Sbjct: 191 LVVYPAAELPLITVRSGGKLVIVNLGETPFDDIATLKYNMDVVEFARRVMEEGGI 245

>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A* Length = 289

 Score =  153 bits (389), Expect = 1e-45
 Identities = 44/195 (22%), Positives = 76/195 (38%), Gaps = 23/195 (11%)

Query: 2   PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
           PS  H  L   +   +LK V +QN+D+L  ++G+  + + E HG+     C  CG  Y  
Sbjct: 89  PSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPP 148

Query: 62  DFEIETIGMKKTPR--RCSDVKCGSRLKDTVLDWEDALPP-------------VEMNPAE 106
                 +         +C    CG  +K  ++ + + LP               E     
Sbjct: 149 QVFKSKLAEHPIKDFVKCD--VCGELVKPAIVFFGEDLPDSFSETWLNDSEWLREKITTS 206

Query: 107 ENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQT----PKDKKASLVVHAP 162
                  +V+ +GTSL + P  +LP + +    K V+ NL+         +   L+VH  
Sbjct: 207 GKHPQQPLVIVVGTSLAVYPFASLP-EEIPRKVKRVLCNLETVGDFKANKRPTDLIVHQY 265

Query: 163 VDKVIAGVMRHLNLW 177
            D+    ++  L  W
Sbjct: 266 SDEFAEQLVEELG-W 279

>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 Length = 361

 Score =  154 bits (391), Expect = 3e-45
 Identities = 43/193 (22%), Positives = 75/193 (38%), Gaps = 22/193 (11%)

Query: 2   PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
           PS  H  L   +   +LK V +QN+D+L  ++G+  + + E HG+     C  CG  Y  
Sbjct: 97  PSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPP 156

Query: 62  DFEIETIGMKKTPR--RCSDVKCGSRLKDTVLDWEDALPP-------------VEMNPAE 106
                 +         +C    CG  +K  ++ + + LP               E     
Sbjct: 157 QVFKSKLAEHPIKDFVKCD--VCGELVKPAIVFFGEDLPDSFSETWLNDSEWLREKITTS 214

Query: 107 ENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQT----PKDKKASLVVHAP 162
                  +V+ +GTSL + P  +LP + +    K V+ NL+         +   L+VH  
Sbjct: 215 GKHPQQPLVIVVGTSLAVYPFASLP-EEIPRKVKRVLCNLETVGDFKANKRPTDLIVHQY 273

Query: 163 VDKVIAGVMRHLN 175
            D+    ++  L 
Sbjct: 274 SDEFAEQLVEELG 286

>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A* Length = 253

 Score =  146 bits (371), Expect = 3e-43
 Identities = 53/176 (30%), Positives = 86/176 (48%), Gaps = 10/176 (5%)

Query: 2   PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
           P+  H A+ ELE+ GI+K VI+QN+D LH R+G    ++ ELHG+  +  C  C   Y  
Sbjct: 78  PNPAHYAIAELERMGIVKAVITQNIDMLHQRAGS--RRVLELHGSMDKLDCLDCHETYDW 135

Query: 62  DFEIETIGMKKTPRRCSDVKC-GSRLK-DTVLDW-EDALPPVEMNPAEENCRMADVVLCL 118
              +E     + PR C   KC    +K   V     + LP   +  A E  +  D  + +
Sbjct: 136 SEFVEDFNKGEIPR-CR--KCGSYYVKPRVV--LFGEPLPQRTLFEAIEEAKHCDAFMVV 190

Query: 119 GTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHL 174
           G+SL + PA  LP  + + G K++IVN + T  D    + +     +V+  ++  +
Sbjct: 191 GSSLVVYPAAELPYIAKKAGAKMIIVNAEPTMADPIFDVKIIGKAGEVLPKIVEEV 246

>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A* Length = 249

 Score =  144 bits (366), Expect = 1e-42
 Identities = 60/175 (34%), Positives = 89/175 (50%), Gaps = 12/175 (6%)

Query: 2   PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
           P+  H A  ELE+ G+LK +I+QNVD LH R+G     +  LHG+     C SC      
Sbjct: 76  PNKAHQAFAELERLGVLKCLITQNVDDLHERAG--SRNVIHLHGSLRVVRCTSCN----N 129

Query: 62  DFEIETIGMKKTPRRCSDVKCGSRLK-DTVLDW-EDALPPVEMNPAEENCRMADVVLCLG 119
            FE+E+        +C   KCGS L+   V  W  + LPP  ++ A      ADV++  G
Sbjct: 130 SFEVESAPKIPPLPKCD--KCGSLLRPGVV--WAGEMLPPDVLDRAMREVERADVIIVAG 185

Query: 120 TSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHL 174
           TS  + PA +LPL   + GG I+ +N  +TP    A   +     +V+  ++RH+
Sbjct: 186 TSAVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELVRHV 240

>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A* Length = 290

 Score =  145 bits (367), Expect = 3e-42
 Identities = 50/171 (29%), Positives = 80/171 (46%), Gaps = 13/171 (7%)

Query: 2   PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
            +  H+AL  LE  G LK V++QNVD LH  SG    K+  LHGN F  +C +C      
Sbjct: 109 INNGHVALSTLESLGYLKSVVTQNVDGLHEASGN--TKVISLHGNVFEAVCCTCNKIVKL 166

Query: 62  DF---EIETIGMKKTPRRCSDVKCGSRLK-DTVLDW-EDALPPVEMNPAEENCRMADVVL 116
           +    +  +  M + P  C    CG   K + +     + +    +  AEE     D++L
Sbjct: 167 NKIMLQKTSHFMHQLPPEC---PCGGIFKPNII--LFGEVVSSDLLKEAEEEIAKCDLLL 221

Query: 117 CLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTP-KDKKASLVVHAPVDKV 166
            +GTS  ++ A NL   + +   KIV +N+ +T   +K +   V A   ++
Sbjct: 222 VIGTSSTVSTATNLCHFACKKKKKIVEINISKTYITNKMSDYHVCAKFSEL 272

>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5 Length = 323

 Score =  134 bits (338), Expect = 1e-37
 Identities = 44/180 (24%), Positives = 81/180 (45%), Gaps = 7/180 (3%)

Query: 2   PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREIC--PSCGVEY 59
           P+I H  +  L+  G+L    +QN+D+L   +G+ +E L E HG  +   C   SC  EY
Sbjct: 112 PTICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLEQEDLVEAHGTFYTSHCVSASCRHEY 171

Query: 60  MRDFEIETIGMKKTPRRCSDVKCGSRLK-DTVLDWEDALPPVEMNPAEENCRMADVVLCL 118
              +  E I  + TP+      C S +K D V  + ++LP    +  + +    D++L +
Sbjct: 172 PLSWMKEKIFSEVTPKCE---DCQSLVKPDIVF-FGESLPARFFSCMQSDFLKVDLLLVM 227

Query: 119 GTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLNLWI 178
           GTSLQ+ P  +L  K+     +++I   +    D    +++             + ++  
Sbjct: 228 GTSLQVQPFASLISKAPLSTPRLLINKEKAGQSDPFLGMIMGLGGGMDFDSKKAYRDVAW 287

>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} PDB: 3rig_A* 2b4y_A* 2nyr_A* Length = 273

 Score =  132 bits (335), Expect = 1e-37
 Identities = 49/188 (26%), Positives = 75/188 (39%), Gaps = 28/188 (14%)

Query: 2   PSITHMALVELE----KAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGV 57
           P+  H A+ E E    K G    VI+QN+D LH ++G   + L E+HG+ F+  C SCGV
Sbjct: 85  PNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGT--KNLLEIHGSLFKTRCTSCGV 142

Query: 58  EYMR-----------------DFEIETIGMKKTPRRCSDVKCGSRLK-DTVLDW-EDALP 98
                                  +  +I ++K PR C +  CG  L+   V  W  + L 
Sbjct: 143 VAENYKSPICPALSGKGAPEPGTQDASIPVEKLPR-CEEAGCGGLLRPHVV--WFGENLD 199

Query: 99  PVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLV 158
           P  +   +      D+ L +GTS  + PA     +    G  +   N + TP   +    
Sbjct: 200 PAILEEVDRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNTETTPATNRFRFH 259

Query: 159 VHAPVDKV 166
              P    
Sbjct: 260 FQGPCGTT 267

>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A Length = 285

 Score =  132 bits (334), Expect = 2e-37
 Identities = 44/177 (24%), Positives = 77/177 (43%), Gaps = 9/177 (5%)

Query: 2   PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
           P++TH  L  L   G+L  + +QN+D L   SGIP  KL E HG      C  C   +  
Sbjct: 92  PNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCTVCQRPFPG 151

Query: 62  DFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTS 121
           +     +   + P RC    C   +K  ++ + + LP   +    +   MAD++L LGTS
Sbjct: 152 EDIRADVMADRVP-RCP--VCTGVVKPDIVFFGEPLPQRFLLHVVD-FPMADLLLILGTS 207

Query: 122 LQITPACNLPLKSLRGGGKIVIVNLQQTP----KDKKASLVVHAPVDKVIAGVMRHL 174
           L++ P  +L  +++R     +++N           +   +     V   +  ++  L
Sbjct: 208 LEVEPFASLT-EAVRSSVPRLLINRDLVGPLAWHPRSRDVAQLGDVVHGVESLVELL 263

>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5 Length = 235

 Score =  128 bits (323), Expect = 3e-36
 Identities = 38/176 (21%), Positives = 74/176 (42%), Gaps = 15/176 (8%)

Query: 2   PSITHMALVELEKA-GILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYM 60
           P+  H+AL +L+ A G    +++QN+D+LH R+G     +  +HG   +  C   G    
Sbjct: 67  PNAAHLALAKLQDALGDRFLLVTQNIDNLHERAGNTN--VIHMHGELLKVRCSQSGQVLD 124

Query: 61  RDFEIETIGMKKTPRRCSDVKCGSRLK-DTVLDW-EDALPPVEMNPAEENCRMADVVLCL 118
              ++     +     C   +  + L+   V  W  +      M+       MAD+ + +
Sbjct: 125 WTGDVTP---EDKCHCC---QFPAPLRPHVV--WFGEMPL--GMDEIYMALSMADIFIAI 174

Query: 119 GTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHL 174
           GTS  + PA     ++   G   V +NL+ +    + +   + P  +V+   +  L
Sbjct: 175 GTSGHVYPAAGFVHEAKLHGAHTVELNLEPSQVGNEFAEKYYGPASQVVPEFVEKL 230

>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae} Length = 354

 Score =  127 bits (320), Expect = 7e-35
 Identities = 41/210 (19%), Positives = 71/210 (33%), Gaps = 34/210 (16%)

Query: 2   PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
            S  H  +  L+  G L    +QN+D+L   +GI  +KL + HG+     C +C      
Sbjct: 114 YSPLHSFIKMLQMKGKLLRNYTQNIDNLESYAGISTDKLVQCHGSFATATCVTCHWNLPG 173

Query: 62  DFEIETIGMKKTPR--RCSDV------------------------------KCGSRLKDT 89
           +     I   + P    C                                      LK  
Sbjct: 174 ERIFNKIRNLELPLCPYCYKKRREYFPEGYNNKVGVAASQGSMSERPPYILNSYGVLKPD 233

Query: 90  VLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQT 149
           +  + +ALP        E+    D+++C+GTSL++ P   +    +      V++N    
Sbjct: 234 ITFFGEALPNKFHKSIREDILECDLLICIGTSLKVAPVSEIV-NMVPSHVPQVLINRDPV 292

Query: 150 PKDKKASLVVHAPVDKVIAGVMRHLNLWIP 179
               +  L +    D + A V +     IP
Sbjct: 293 KHA-EFDLSLLGYCDDIAAMVAQKCGWTIP 321

>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae} Length = 197

 Score = 39.3 bits (91), Expect = 5e-04
 Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 19/66 (28%)

Query: 37 REKLAELHGN-SFREICPSCGV---EYMRDFEI-ETIGMKKTPRRCSDVKCGSRLKDTVL 91
           ++      N +    CP C V   + +  F   + +        C+   CG  L D ++
Sbjct: 8  DKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVV--------CAL--CGLVLSDKLV 57

Query: 92 D----W 93
          D    W
Sbjct: 58 DTRSEW 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	266
3k35_A	318	NAD-dependent deacetylase sirtuin-6; rossmann fold	100.0
3pki_A	355	NAD-dependent deacetylase sirtuin-6; ADP ribose, s	100.0
1yc5_A	246	NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM,	100.0
3glr_A	285	NAD-dependent deacetylase sirtuin-3, mitochondria;	100.0
1ma3_A	253	SIR2-AF2, transcriptional regulatory protein, SIR2	100.0
1m2k_A	249	Silent information regulator 2; protein-ligand com	100.0
1q1a_A	289	HST2 protein; ternary complex, histone deacetylase	100.0
4iao_A	492	NAD-dependent histone deacetylase SIR2; protein co	100.0
2hjh_A	354	NAD-dependent histone deacetylase SIR2; protein, s	100.0
3riy_A	273	NAD-dependent deacetylase sirtuin-5; desuccinylase	100.0
1q14_A	361	HST2 protein; histone deacetylase, hydrolase; 2.50	100.0
1j8f_A	323	SIRT2, sirtuin 2, isoform 1, silencing INFO; gene	100.0
3u31_A	290	SIR2A, transcriptional regulatory protein SIR2 hom	100.0
1s5p_A	235	NAD-dependent deacetylase; protein deacetylase, SI	100.0
2c31_A	568	Oxalyl-COA decarboxylase; oxalate, thiamin diphosp	94.85
2q28_A	564	Oxalyl-COA decarboxylase; lyase, oxalate degradati	94.24
1ybh_A	590	Acetolactate synthase, chloroplast; acetohydroxyac	93.62
4feg_A	603	Pyruvate oxidase; carbanion, structure activity re	93.43
1o97_D	320	Electron transferring flavoprotein alpha-subunit;	93.41
3lq1_A	578	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-	93.4
2iht_A	573	Carboxyethylarginine synthase; thiamin diphosphate	92.99
1ozh_A	566	ALS, acetolactate synthase, catabolic; acetohydrox	92.63
2pgn_A	589	Cyclohexane-1,2-dione hydrolase (CDH); three alpha	92.56
3eya_A	549	Pyruvate dehydrogenase [cytochrome]; pyruvate oxid	92.31
2uz1_A	563	Benzaldehyde lyase; thiamine diphosphate, thiamine	91.92
3hww_A	556	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-	91.66
1efv_A	315	Electron transfer flavoprotein; electron transport	91.58
1efp_A	307	ETF, protein (electron transfer flavoprotein); ele	91.45
1q6z_A	528	BFD, BFDC, benzoylformate decarboxylase; lyase, ca	90.95
2pan_A	616	Glyoxylate carboligase; thiamin-diphosphate (THDP)	90.75
2x7j_A	604	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -	90.67
1v5e_A	590	Pyruvate oxidase; oxidoreductase, flavoprotein; HE	90.11
1t9b_A	677	Acetolactate synthase, mitochondrial; acetohydroxy	88.93
1pno_A	180	NAD(P) transhydrogenase subunit beta; nucleotide b	86.62
1djl_A	207	Transhydrogenase DIII; rossmann fold dinucleotide	85.05
2fsv_C	203	NAD(P) transhydrogenase subunit beta; NAD(P) trans	84.89
2vk8_A	563	Pyruvate decarboxylase isozyme 1; asymmetric activ	83.17
2vbi_A	566	Pyruvate decarboxylase; thiamine pyrophosphate, ly	82.8
2vpz_A	765	Thiosulfate reductase; oxidoreductase, molybdopter	82.78
2wvg_A	568	PDC, pyruvate decarboxylase; thiamine diphosphate,	82.14
1d4o_A	184	NADP(H) transhydrogenase; nucleotide-binding fold,	82.0
2bru_C	186	NAD(P) transhydrogenase subunit beta; paramagnetic	81.96
1ovm_A	552	Indole-3-pyruvate decarboxylase; thiamine diphosph	80.83
2k5c_A	95	Uncharacterized protein PF0385; structural genomic	80.39
2e7z_A	727	Acetylene hydratase AHY; tungstoprotein, DMSO redu	80.05

>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.8e-53  Score=391.90  Aligned_cols=187  Identities=51%  Similarity=0.876  Sum_probs=167.5

Q ss_pred             CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCCC-
Q 024533            1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSD-   79 (266)
Q Consensus         1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~-   79 (266)
                      +||.+|++|++|+++|++++||||||||||+|||+++++|+|||||++..+|.+|++.|.+++...........|.|+. 
T Consensus        90 ~Pn~~H~aLa~Le~~g~~~~viTQNIDgLh~rAG~~~~~VielHGsl~~~~C~~C~~~~~~~~~~~~~~~~p~~~~C~~~  169 (318)
T 3k35_A           90 RPTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVGTMGLKATGRLCTVA  169 (318)
T ss_dssp             CCCHHHHHHHHHHHTTCCCEEEECCCSCHHHHBTCCGGGEEETTCCTTEEEETTTCCEEECSSCCSCCSSCEEEEECCC-
T ss_pred             CCCHHHHHHHHHHHcCCceEEEEecccchHhhcCCCccCEEEeCCCCCeeEeCCCCCccchHHhhhhcccCCCCCcCccc
Confidence            6999999999999999999999999999999999988899999999999999999999876643322211112345641 


Q ss_pred             -----CCCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCC
Q 024533           80 -----VKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKK  154 (266)
Q Consensus        80 -----~~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~  154 (266)
                           +.|||.|||+||||||++|.+.+++|.+++++||++|||||||+|+|+++|+..|.++|+++++||+++|+.|..
T Consensus       170 ~~~~c~~CgG~LRPdVV~FGE~lP~~~~~~a~~~~~~aDllLViGTSL~V~Paa~l~~~a~~~G~~vviIN~~~t~~d~~  249 (318)
T 3k35_A          170 KARGLRACRGELRDTILDWEDSLPDRDLALADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRH  249 (318)
T ss_dssp             -------CCCEEEECCCCTTCCCCHHHHHHHHHHHHTCSEEEEESCCCCSTTGGGHHHHHHHTTCEEEEECSSCCTTGGG
T ss_pred             ccccccCcCCeeCCCEEEccCcCCHHHHHHHHHHHhcCCEEEEEccCCCchhhhhhHHHHHhcCCEEEEECCCCCCCCCc
Confidence                 269999999999999999999999999999999999999999999999999998999999999999999999999


Q ss_pred             ccEEEECcHHHHHHHHHHHcccCCCCcccccce
Q 024533          155 ASLVVHAPVDKVIAGVMRHLNLWIPPYVRVDLF  187 (266)
Q Consensus       155 adl~I~g~~~evl~~L~~~L~~~ip~~~~~~~~  187 (266)
                      +|++|+|+++++|++|++.|||+||+|+..+.+
T Consensus       250 adl~i~g~~~evl~~L~~~Lg~~iP~~~~~~~~  282 (318)
T 3k35_A          250 ADLRIHGYVDEVMTRLMKHLGLEIPAWDGPRVL  282 (318)
T ss_dssp             CSEEECSCHHHHHHHHHHHHTCCCCCCCSCBCC
T ss_pred             ccEEEeCCHHHHHHHHHHHhCCCCCCCCCCcee
Confidence            999999999999999999999999999997643

>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural genomics, structural genomics consortium, SGC, hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*

Probab=100.00  E-value=1.5e-52  Score=390.79  Aligned_cols=187  Identities=51%  Similarity=0.872  Sum_probs=168.1

Q ss_pred             CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCCC-
Q 024533            1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSD-   79 (266)
Q Consensus         1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~-   79 (266)
                      +||.+|++|++|+++|++++||||||||||+|||+++++|+|||||++..+|.+|++.|.+++....+..+...+.|+. 
T Consensus        90 ~Pn~~H~aLa~Le~~g~l~~viTQNIDgLh~rAG~~~~~VieLHGsl~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~  169 (355)
T 3pki_A           90 RPTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVGTMGLKATGRLCTVA  169 (355)
T ss_dssp             CCCHHHHHHHHHHHTTCCSEEEECCCSCHHHHEEEEGGGEEETTCCTTEEEETTTCCEEEBSSCCSCCSSCEEEEECCCC
T ss_pred             CCCHHHHHHHHHHHcCCCcEEEEecccchHhhcCCCcccEEEeCCCCCceeeCCCCCccchHHhhhhcccCCCCCccccc
Confidence            6999999999999999999999999999999999987899999999999999999999877643322211112345631 


Q ss_pred             -----CCCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCC
Q 024533           80 -----VKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKK  154 (266)
Q Consensus        80 -----~~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~  154 (266)
                           +.|||.|||+||||||++|.+.+++|.+++++||++|||||||+|+|+++|+..|.++|+++|+||+++|..|..
T Consensus       170 ~~~~~~~CgG~LRPdVV~FGE~lP~~~~~~A~~~~~~aDllLViGTSL~V~Paa~Lp~~a~~~G~~vviIN~~pT~~d~~  249 (355)
T 3pki_A          170 KARGLRACRGELRDTILDWEDSLPDRDLALADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRH  249 (355)
T ss_dssp             CBTTBCCCCCEEEECCCCTTSCCCHHHHHHHHHHHHHCSEEEEESCCCCSTTGGGTTHHHHHTTCEEEEECSSCCTTGGG
T ss_pred             cccccccCCCccCCCEEECCCcCCHHHHHHHHHHHhcCCEEEEEeeCCCchhhhhhHHHHHhcCCEEEEECCCCCCCCCc
Confidence                 279999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccEEEECcHHHHHHHHHHHcccCCCCcccccce
Q 024533          155 ASLVVHAPVDKVIAGVMRHLNLWIPPYVRVDLF  187 (266)
Q Consensus       155 adl~I~g~~~evl~~L~~~L~~~ip~~~~~~~~  187 (266)
                      +|++|+|+++++|++|++.|||+||+|.....+
T Consensus       250 adl~i~g~a~evl~~L~~~Lg~~iP~~~~~~~~  282 (355)
T 3pki_A          250 ADLRIHGYVDEVMTRLMEHLGLEIPAWDGPRVL  282 (355)
T ss_dssp             CSEEECSCHHHHHHHHHHHTTCCCCCCCSCEEE
T ss_pred             cCEEEeCCHHHHHHHHHHHhCCCCCCCCCCcee
Confidence            999999999999999999999999999986644

>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*

Probab=100.00  E-value=1.2e-49  Score=356.77  Aligned_cols=171  Identities=34%  Similarity=0.566  Sum_probs=159.9

Q ss_pred             CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCCCC
Q 024533            1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDV   80 (266)
Q Consensus         1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~   80 (266)
                      +||++|++|++|+++|++++||||||||||+|||+  ++|+|+|||++..+|..|++.|+.++..+.+. ....|+|+  
T Consensus        75 ~Pn~~H~~La~L~~~g~~~~viTQNvD~Lh~~AG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~-~~~~p~C~--  149 (246)
T 1yc5_A           75 KPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGS--KKVIELHGNVEEYYCVRCEKKYTVEDVIKKLE-SSDVPLCD--  149 (246)
T ss_dssp             CCCHHHHHHHHHHHTTSCSEEEECCCSCHHHHTTC--SCEEETTEEEEEEEETTTCCEEEHHHHHHHTT-TCSSCBCT--
T ss_pred             CCCHHHHHHHHHHhcCCCceEEeccccchHhHcCC--CcEEEecCccceeEcCCCCCCCcHHHHHHHhc-cCCCCCCC--
Confidence            69999999999999999999999999999999998  78999999999999999999988776554432 23579999  


Q ss_pred             CCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCCccEEEE
Q 024533           81 KCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH  160 (266)
Q Consensus        81 ~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~  160 (266)
                      .|||.|||+||||||++|++.++++.+++++||++|||||||+|+|+++|+..++.+|+++|+||+++++.|..+++.|+
T Consensus       150 ~Cgg~lrP~vv~FgE~lp~~~~~~a~~~~~~adl~lviGTSl~V~P~~~l~~~a~~~g~~~i~IN~~~~~~d~~~~~~i~  229 (246)
T 1yc5_A          150 DCNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGETPFDDIATLKYN  229 (246)
T ss_dssp             TTCCBEEEEECCBTSBCCHHHHHHHHHHHHHCSEEEEESCCSCEETGGGHHHHHHHHTCEEEEECSSCCTTGGGCSEEEC
T ss_pred             CCCCccCcceEECCCCCCHHHHHHHHHHHhcCCEEEEECCCCcchhHHHHHHHHHHcCCeEEEEeCCCCCCCcceeEEEe
Confidence            89999999999999999998999999999999999999999999999999988888899999999999999999999999


Q ss_pred             CcHHHHHHHHHHHccc
Q 024533          161 APVDKVIAGVMRHLNL  176 (266)
Q Consensus       161 g~~~evl~~L~~~L~~  176 (266)
                      |+++++|++|++.||+
T Consensus       230 ~~~~~~l~~l~~~lg~  245 (246)
T 1yc5_A          230 MDVVEFARRVMEEGGI  245 (246)
T ss_dssp             SCHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHcCC
Confidence            9999999999999986

>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*

Probab=100.00  E-value=2.5e-49  Score=361.40  Aligned_cols=172  Identities=25%  Similarity=0.370  Sum_probs=155.7

Q ss_pred             CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCCCC
Q 024533            1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDV   80 (266)
Q Consensus         1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~   80 (266)
                      +||++|++|++|+++|++.+||||||||||++||+++++|+|||||++..+|..|++.|+.+.....+. ...+|+|+  
T Consensus        91 ~Pn~~H~~La~Le~~g~l~~viTQNIDgLh~rAG~~~~~VielHGs~~~~~C~~C~~~~~~~~~~~~i~-~~~~P~C~--  167 (285)
T 3glr_A           91 KPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCTVCQRPFPGEDIRADVM-ADRVPRCP--  167 (285)
T ss_dssp             CCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCGGGEEETTEEEEEEEETTTCCEEEGGGGHHHHH-TTCCCBCT--
T ss_pred             CCCHHHHHHHHHHHcCCCceEEeeeecchHhhcCCCcccEEEecCCCCeEEECCCCCcCCHHHHHHHhh-cCCCCCCC--
Confidence            699999999999999999999999999999999998899999999999999999999998765443332 34579998  


Q ss_pred             CCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCC----CCCCcc
Q 024533           81 KCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTP----KDKKAS  156 (266)
Q Consensus        81 ~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~----~d~~ad  156 (266)
                      .|||.|||+||||||++|++.+ .+.+.+.+||++|||||||+|+|++.|+.. .+.|+++|+||++++.    .+..+|
T Consensus       168 ~Cgg~lrP~IV~FGE~lp~~~~-~~~~~~~~aDlllviGTSl~V~Paa~l~~~-~~~~~~~v~IN~~~~~~~~~~~~~~d  245 (285)
T 3glr_A          168 VCTGVVKPDIVFFGEPLPQRFL-LHVVDFPMADLLLILGTSLEVEPFASLTEA-VRSSVPRLLINRDLVGPLAWHPRSRD  245 (285)
T ss_dssp             TTCCBEEEEECCTTSBCCGGGG-GHHHHHHHCSEEEEESCCCCEETTGGGGGS-SCTTSCEEEEESSCCTHHHHSCCTTE
T ss_pred             CCCCccCCcEEEeCCcCCHHHH-HHHHHHhcCCEEEEeCCCCccccHHHHHHH-HhCCCcEEEECCCCcCccccCCCCcc
Confidence            8999999999999999998876 567788999999999999999999999964 5678899999999996    467899


Q ss_pred             EEEECcHHHHHHHHHHHcccC
Q 024533          157 LVVHAPVDKVIAGVMRHLNLW  177 (266)
Q Consensus       157 l~I~g~~~evl~~L~~~L~~~  177 (266)
                      +.+.|+|++++++|++.|||+
T Consensus       246 ~~~~g~~~~~~~~L~~~lgw~  266 (285)
T 3glr_A          246 VAQLGDVVHGVESLVELLGWT  266 (285)
T ss_dssp             EEEESCHHHHHHHHHHHHTCH
T ss_pred             EEEcCCHHHHHHHHHHHhCCH
Confidence            999999999999999999994

>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*

Probab=100.00  E-value=3.3e-48  Score=348.73  Aligned_cols=170  Identities=32%  Similarity=0.525  Sum_probs=157.8

Q ss_pred             CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCCCC
Q 024533            1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDV   80 (266)
Q Consensus         1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~   80 (266)
                      +||++|++|++|+++|++++||||||||||++||+  ++|+|+|||++..+|..|++.|+.+.....+.. ...|+|+  
T Consensus        77 ~Pn~~H~~La~L~~~g~~~~viTQNvD~Lh~~AG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~-~~~p~C~--  151 (253)
T 1ma3_A           77 EPNPAHYAIAELERMGIVKAVITQNIDMLHQRAGS--RRVLELHGSMDKLDCLDCHETYDWSEFVEDFNK-GEIPRCR--  151 (253)
T ss_dssp             CCCHHHHHHHHHHHTTSEEEEEESCCSCHHHHHTC--CSEEETTEEEEEEEETTTCCEEEGGGTHHHHHT-TCCCCCT--
T ss_pred             CCCHHHHHHHHHHhcCCCeEEEeccccccHhHhCC--CCEEEeCCCcCeeeeCCCCCcCcHHHHHHHhcc-CCCCCCC--
Confidence            69999999999999999999999999999999998  799999999999999999999887765544432 3479998  


Q ss_pred             CCCC-cccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCCccEEE
Q 024533           81 KCGS-RLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVV  159 (266)
Q Consensus        81 ~Cgg-~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I  159 (266)
                      .||| .|||+||||||++|++.++++.+++++||++|||||||+|+|+++|+..+...|+++|+||+++++.|..+++.|
T Consensus       152 ~Cgg~~lrP~Vv~FgE~lp~~~~~~a~~~~~~adl~lviGTSl~V~P~~~l~~~a~~~g~~~i~iN~~~~~~d~~~~~~i  231 (253)
T 1ma3_A          152 KCGSYYVKPRVVLFGEPLPQRTLFEAIEEAKHCDAFMVVGSSLVVYPAAELPYIAKKAGAKMIIVNAEPTMADPIFDVKI  231 (253)
T ss_dssp             TTCCSCEEEEECCBTSBCCHHHHHHHHHHHHHCSEEEEESCCSCEETGGGHHHHHHHHTCEEEEEESSCCTTGGGCSEEE
T ss_pred             CCCCccccceEEEeCCCCCHHHHHHHHHHHHhCCEEEEECCCceeccHHHHHHHHHHcCCeEEEEeCCCCCCCCceeEEE
Confidence            8999 999999999999999899999999999999999999999999999998888889999999999999999999999


Q ss_pred             ECcHHHHHHHHHHHcc
Q 024533          160 HAPVDKVIAGVMRHLN  175 (266)
Q Consensus       160 ~g~~~evl~~L~~~L~  175 (266)
                      +|+++++|++|++.|.
T Consensus       232 ~~~~~~~l~~l~~~l~  247 (253)
T 1ma3_A          232 IGKAGEVLPKIVEEVK  247 (253)
T ss_dssp             ESCHHHHHHHHHHHHH
T ss_pred             eCCHHHHHHHHHHHHH
Confidence            9999999999998763

>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*

Probab=100.00  E-value=6.1e-48  Score=346.26  Aligned_cols=167  Identities=34%  Similarity=0.541  Sum_probs=155.3

Q ss_pred             CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCCCC
Q 024533            1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDV   80 (266)
Q Consensus         1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~   80 (266)
                      +||++|++|++|+++|++++||||||||||+|||+  ++|+|+|||++..+|..|++.|+.++.   + .....|+|+  
T Consensus        75 ~Pn~~H~~La~L~~~g~~~~viTQNiDgLh~~AG~--~~v~elHG~~~~~~C~~C~~~~~~~~~---~-~~~~~p~C~--  146 (249)
T 1m2k_A           75 QPNKAHQAFAELERLGVLKCLITQNVDDLHERAGS--RNVIHLHGSLRVVRCTSCNNSFEVESA---P-KIPPLPKCD--  146 (249)
T ss_dssp             CCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTC--CSEEETTEEEEEEEESSSSCEEECSSC---C-CSSSCCBCS--
T ss_pred             CCCHHHHHHHHHHhCCCCcEEEECCccchhhhcCC--CcEEEecCCcceeEeCCCCCcccchhh---c-cCCCCCCCC--
Confidence            69999999999999999999999999999999997  799999999999999999998876543   1 122479998  


Q ss_pred             CCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCCccEEEE
Q 024533           81 KCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH  160 (266)
Q Consensus        81 ~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~  160 (266)
                      .|||.|||+||||||++|++.++++.+++++||++|||||||+|+|+++|+..+...|+++|+||+++++.|..+++.|.
T Consensus       147 ~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~adlllviGTSl~V~P~~~l~~~a~~~g~~~i~IN~~~~~~d~~~~~~i~  226 (249)
T 1m2k_A          147 KCGSLLRPGVVWAGEMLPPDVLDRAMREVERADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLR  226 (249)
T ss_dssp             SSSSBEEEEECCTTSCCCHHHHHHHHHHHHHCSEEEEESCCSCSTTGGGHHHHHHHTTCEEEEECSSCCTTGGGCSEEEC
T ss_pred             CCCCCcCCeEEecCCCCCHHHHHHHHHHHhcCCEEEEEccCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCcceeEEEe
Confidence            89999999999999999999999999999999999999999999999999998888999999999999999999999999


Q ss_pred             CcHHHHHHHHHHHcc
Q 024533          161 APVDKVIAGVMRHLN  175 (266)
Q Consensus       161 g~~~evl~~L~~~L~  175 (266)
                      |+++++|++|++.|.
T Consensus       227 ~~~~~~l~~l~~~l~  241 (249)
T 1m2k_A          227 GKAGEVMDELVRHVR  241 (249)
T ss_dssp             SCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999999988763

>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*

Probab=100.00  E-value=6.9e-48  Score=352.70  Aligned_cols=174  Identities=25%  Similarity=0.377  Sum_probs=151.6

Q ss_pred             CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhhcc--CCCCCCC
Q 024533            1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMK--KTPRRCS   78 (266)
Q Consensus         1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~--~~~p~Cp   78 (266)
                      +||++|++|++|+++|++++||||||||||+|||+++++|+|+|||++..+|.+|++.|+.+.....+...  ...|+|+
T Consensus        88 ~Pn~~H~~La~L~~~g~~~~viTQNVDgLh~~AG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~P~C~  167 (289)
T 1q1a_A           88 RPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCD  167 (289)
T ss_dssp             CCCHHHHHHHHHHHTTCEEEEEECCSSCHHHHTTCCGGGEEETTEEEEEEEETTTCCEECHHHHHHHHTCSSCCSCCBCT
T ss_pred             CCCHHHHHHHHHHhCCCccEEEecCccchHHHcCCCcccEEEecCCcCceEECCCCCCCcHHHHHHHHhhccCCCCccCC
Confidence            69999999999999999999999999999999999888999999999999999999999877655554321  2579998


Q ss_pred             CCCCCCcccccEEEcCCCCChhchhHH-------------HHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEEC
Q 024533           79 DVKCGSRLKDTVLDWEDALPPVEMNPA-------------EENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVN  145 (266)
Q Consensus        79 ~~~Cgg~lrP~Vv~FgE~lp~~~~~~a-------------~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN  145 (266)
                        .|||.|||+||||||++|++.++.+             .+.+.+||++|||||||+|+|+++|+..+. .|+++|+||
T Consensus       168 --~Cgg~lrP~vv~FGE~lp~~~~~~~~~~~~~l~~~~~a~~~~~~~DlllviGTSl~V~Pa~~l~~~~~-~~~~~v~IN  244 (289)
T 1q1a_A          168 --VCGELVKPAIVFFGEDLPDSFSETWLNDSEWLREKITTSGKHPQQPLVIVVGTSLAVYPFASLPEEIP-RKVKRVLCN  244 (289)
T ss_dssp             --TTCCBEEEEECCBTSBCCHHHHHHHHHHHHHHHHHHHC----CCCCEEEEESCCCCEETTTHHHHHSC-TTSEEEEES
T ss_pred             --CCCCEECCCEEEcCCCCCHHHHHHHHHhhhhhhhhhhHHHHhccCCEEEEEccCCChhhHHHHHHHHh-cCCCEEEEE
Confidence              8999999999999999998754433             234678999999999999999999997665 699999999


Q ss_pred             CCCCC----CCCCccEEEECcHHHHHHHHHHHcccC
Q 024533          146 LQQTP----KDKKASLVVHAPVDKVIAGVMRHLNLW  177 (266)
Q Consensus       146 ~~~t~----~d~~adl~I~g~~~evl~~L~~~L~~~  177 (266)
                      ++++.    .+..+|+.|+|+++++|++|++.|||+
T Consensus       245 ~~~~~~~~~~~~~~d~~i~~~~~~~l~~l~~~l~~~  280 (289)
T 1q1a_A          245 LETVGDFKANKRPTDLIVHQYSDEFAEQLVEELGWQ  280 (289)
T ss_dssp             SSCCTHHHHSCCTTCEEECCCHHHHHHHHHHHHTCH
T ss_pred             CCCcccCCCCCcceeEEEeCCHHHHHHHHHHHcCCH
Confidence            99997    245689999999999999999999984

>4iao_A NAD-dependent histone deacetylase SIR2; protein complex, deacetylase, nucleus, hydrolase-trans complex; HET: APR; 2.90A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-47  Score=369.77  Aligned_cols=179  Identities=22%  Similarity=0.274  Sum_probs=158.4

Q ss_pred             CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCCCC
Q 024533            1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDV   80 (266)
Q Consensus         1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~   80 (266)
                      +||++|++|++|+++|++.+||||||||||++||+++++|+|||||++..+|..|++.|+.+...+.+.. ..+|.|+.|
T Consensus       251 ~Pn~aH~aLa~Le~~G~l~~VITQNIDgLHqrAG~~s~~ViELHGsl~~~~C~~Cg~~~~~e~i~~~i~~-~~~P~Cp~C  329 (492)
T 4iao_A          251 IYSPLHSFIKMLQMKGKLLRNYTQNIDNLESYAGISTDKLVQCHGSFATATCVTCHWNLPGERIFNKIRN-LELPLCPYC  329 (492)
T ss_dssp             CCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCTTTEEETTCCTTEEEETTTCCEEEGGGGHHHHHT-TCCCBCTTT
T ss_pred             CCCHHHHHHHHHHHCCCCceeEeccccchHhhcCCChhhEEeecCccceeecCCCCCcCCHHHHHHHHhc-cCCCCCccc
Confidence            5999999999999999999999999999999999988999999999999999999999887654443321 234666511


Q ss_pred             ---------------------------------CCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhc
Q 024533           81 ---------------------------------KCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPA  127 (266)
Q Consensus        81 ---------------------------------~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa  127 (266)
                                                       .|||.|||+||||||++|++.++.+.+.+.+||++|||||||+|+|+
T Consensus       330 g~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~c~~cgG~LRPdIVfFGE~LP~~~~~~a~~~~~~aDLlLVIGTSL~VyPa  409 (492)
T 4iao_A          330 YKKRREYFPEGYNNKVGVAASQGSMSERPPYILNSYGVLKPDITFFGEALPNKFHKSIREDILECDLLICIGTSLKVAPV  409 (492)
T ss_dssp             HHHHHHHSTTCCCCC--------CCTTCCTTCCTTTTBEEESSCCBTSBCCHHHHHHHHHHTTTCSEEEEESCCCCEETG
T ss_pred             ccccccccccccccccccccccccccccccccccCCCcCCCCEEECCCCCCHHHHHHHHHHHhhCCEEEEeccCCCccch
Confidence                                             46699999999999999999899999999999999999999999999


Q ss_pred             ccchHHHhcCCCEEEEECCCCCCCCCCccEEEECcHHHHHHHHHHHcccCCCCcc
Q 024533          128 CNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLNLWIPPYV  182 (266)
Q Consensus       128 ~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~g~~~evl~~L~~~L~~~ip~~~  182 (266)
                      ++|+..+ ..++++|+||+++++.+ .+|+.|.|+|+++++.|++.|||+||.=.
T Consensus       410 A~Lv~~a-~~~~p~ViIN~ept~~~-~~Dl~l~G~cdevv~~L~~~LGw~ip~~~  462 (492)
T 4iao_A          410 SEIVNMV-PSHVPQVLINRDPVKHA-EFDLSLLGYCDDIAAMVAQKCGWTIPHKK  462 (492)
T ss_dssp             GGHHHHS-BTTSCEEEEESSCCTTS-CCSEEEESCHHHHHHHHHHHTTCCCCSTT
T ss_pred             hhHHHHH-hcCCcEEEEcCCCCCCC-CccEEEeCCHHHHHHHHHHHhCCCCChHH
Confidence            9999764 57889999999999864 58999999999999999999999999544

>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-47  Score=360.15  Aligned_cols=180  Identities=22%  Similarity=0.273  Sum_probs=161.2

Q ss_pred             CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCCC-
Q 024533            1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSD-   79 (266)
Q Consensus         1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~-   79 (266)
                      +||++|++|++|+++|++.+||||||||||++||+++++|+|||||++..+|.+|++.|+.+...+.+.. ...|.|+. 
T Consensus       113 ~Pn~~H~aLa~Le~~g~l~~viTQNVDgLh~rAG~~~~~vielHGsl~~~~C~~C~~~~~~~~~~~~~~~-~~~P~Cp~C  191 (354)
T 2hjh_A          113 IYSPLHSFIKMLQMKGKLLRNYTQNIDNLESYAGISTDKLVQCHGSFATATCVTCHWNLPGERIFNKIRN-LELPLCPYC  191 (354)
T ss_dssp             CCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCTTTEEETTEEEEEEEETTTCCEEEGGGGHHHHHT-TCCCBCTTT
T ss_pred             CCCHHHHHHHHHHHcCCceEEEecccCcHHHHcCCCccCEEEecCCcCccccCCCCCcCCHHHHHHHhhc-cCCCcCccc
Confidence            5999999999999999999999999999999999988999999999999999999999887765554432 24677762 


Q ss_pred             --------------------------------CCCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhc
Q 024533           80 --------------------------------VKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPA  127 (266)
Q Consensus        80 --------------------------------~~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa  127 (266)
                                                      +.|||.|||+||||||++|++.++.+.+++.+||++|||||||+|+|+
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~lrPdVV~FGE~lp~~~~~~a~~~~~~aDllLviGTSL~V~Pa  271 (354)
T 2hjh_A          192 YKKRREYFPEGYNNKVGVAASQGSMSERPPYILNSYGVLKPDITFFGEALPNKFHKSIREDILECDLLICIGTSLKVAPV  271 (354)
T ss_dssp             HHHHHHHCCC-----------------CCTTSCTTTTBEEEEECCBTSBCCHHHHHHHHHHTTTCCEEEEESCCCCEETG
T ss_pred             cccccccccccccccccccccccccccccccccccCCeeCCChhhccccCCHHHHHHHHHHHhhCCEEEEECcCCCchhH
Confidence                                            135799999999999999998889999999999999999999999999


Q ss_pred             ccchHHHhcCCCEEEEECCCCCCCCCCccEEEECcHHHHHHHHHHHcccCCCCccc
Q 024533          128 CNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLNLWIPPYVR  183 (266)
Q Consensus       128 ~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~g~~~evl~~L~~~L~~~ip~~~~  183 (266)
                      ++|+..+ ..|+++|+||++++..+ .+|+.|.|+|+++|++|++.|||++|.+.-
T Consensus       272 a~lv~~~-~~~~~~v~IN~~~t~~~-~~dl~i~g~~~~vl~~L~~~lgw~~p~~~~  325 (354)
T 2hjh_A          272 SEIVNMV-PSHVPQVLINRDPVKHA-EFDLSLLGYCDDIAAMVAQKCGWTIPHKKW  325 (354)
T ss_dssp             GGHHHHS-CTTSCEEEEESSCCTTS-CCSEEEESCHHHHHHHHHHHHTCCCCSTTH
T ss_pred             HHHHHHH-hcCCcEEEEcCCCCCCC-CcCEEEeCCHHHHHHHHHHHcCCCCchHHH
Confidence            9999765 56889999999999875 589999999999999999999999998654

>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} SCOP: c.31.1.5 PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A*

Probab=100.00  E-value=9.1e-48  Score=349.47  Aligned_cols=169  Identities=26%  Similarity=0.443  Sum_probs=149.5

Q ss_pred             CCCHHHHHHHHHHH----cCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhH--HHHh------
Q 024533            1 MPSITHMALVELEK----AGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFE--IETI------   68 (266)
Q Consensus         1 ~Pn~~H~aLa~L~~----~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~--~~~~------   68 (266)
                      +||++|++|++|++    +|++++||||||||||+|||+  ++|+|||||++..+|.+|++.|.....  ...+      
T Consensus        84 ~Pn~~H~~La~Le~~~~~~g~~~~viTQNiDgLh~~AG~--~~vielHG~~~~~~C~~C~~~~~~~~~p~~~~~~~~~~~  161 (273)
T 3riy_A           84 EPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGT--KNLLEIHGSLFKTRCTSCGVVAENYKSPICPALSGKGAP  161 (273)
T ss_dssp             CCCHHHHHHHHHHHHHHTTTCEEEEEESCCSCHHHHHTC--CSEEETTEEEEEEEETTTCCEEECCCSSSSGGGTTCCCC
T ss_pred             CCCHHHHHHHHHHHhhhhcCceeEEEEecccchHhhcCC--CCEEEecCcCCeeEcCCCCCcccccccchhhhhhcccCC
Confidence            69999999999996    599999999999999999998  799999999999999999998754210  0000      


Q ss_pred             --------hccCCCCCCCCCCCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCE
Q 024533           69 --------GMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGK  140 (266)
Q Consensus        69 --------~~~~~~p~Cp~~~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~  140 (266)
                              -.....|+|+.+.|||.|||+||||||++|++.+++|.+++++|||+|||||||+|+|+++|+..+.++|++
T Consensus       162 ~~~~~~~~~~~~~~P~C~~~~Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~aDl~lviGTSl~V~Paa~l~~~a~~~g~~  241 (273)
T 3riy_A          162 EPGTQDASIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVP  241 (273)
T ss_dssp             STTCCCCCCCGGGSCBCCGGGCCCBEEEEECCTTSBCCHHHHHHHHHHHHHCSEEEEESCCSCEETGGGHHHHHHHTTCC
T ss_pred             cccccccccccCCCCCCCCCCCCCeeCCcEEEeCCcCCHHHHHHHHHHHhcCCEEEEEeeCCcchhHHHhHHHHHHCCCE
Confidence                    011246899322899999999999999999999999999999999999999999999999999888889999


Q ss_pred             EEEECCCCCCCCCCccEEEECcHHHHHHHHH
Q 024533          141 IVIVNLQQTPKDKKASLVVHAPVDKVIAGVM  171 (266)
Q Consensus       141 lViIN~~~t~~d~~adl~I~g~~~evl~~L~  171 (266)
                      +++||+++|+.|..+++.|+|+++++|++|+
T Consensus       242 ~v~IN~~~t~~d~~~~~~i~g~~~~~l~~l~  272 (273)
T 3riy_A          242 VAEFNTETTPATNRFRFHFQGPCGTTLPEAL  272 (273)
T ss_dssp             EEEEESSCCTTGGGSSEEEESCHHHHHHHHH
T ss_pred             EEEECCCCCCCCcceeEEEeCCHHHHHHHHh
Confidence            9999999999999999999999999999885

>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5

Probab=100.00  E-value=7e-47  Score=355.38  Aligned_cols=180  Identities=24%  Similarity=0.364  Sum_probs=155.6

Q ss_pred             CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhhcc--CCCCCCC
Q 024533            1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMK--KTPRRCS   78 (266)
Q Consensus         1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~--~~~p~Cp   78 (266)
                      +||++|++|++|++.|++++||||||||||++||+++++|+|||||++..+|..|++.|+.+.....+...  ..+|+||
T Consensus        96 ~Pn~~H~aLa~Le~~g~~~~ViTQNVDgLh~rAG~~~~~VielHGsl~~~~C~~C~~~~~~~~~~~~~~~~~~~~~P~Cp  175 (361)
T 1q14_A           96 RPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCD  175 (361)
T ss_dssp             CCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCGGGEEETTEEEEEEEETTTCCEECTHHHHHHTTSSSCSCCCBCT
T ss_pred             CCCHHHHHHHHHHhcCCCcEEEecccchhHhHcCCCcceEEeccccccccCcCCCCccCcHHHHHHHHhhcccCCCCCCc
Confidence            59999999999999999999999999999999999888999999999999999999999877655544322  2369998


Q ss_pred             CCCCCCcccccEEEcCCCCChhchhHHHH-------------HhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEEC
Q 024533           79 DVKCGSRLKDTVLDWEDALPPVEMNPAEE-------------NCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVN  145 (266)
Q Consensus        79 ~~~Cgg~lrP~Vv~FgE~lp~~~~~~a~~-------------~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN  145 (266)
                        .|||.|||+||||||++|...+..+.+             .+.+||++|||||||+|+|+++|+..+. .|+++|+||
T Consensus       176 --~Cgg~lrP~VV~FGE~lp~~~~~~~~~a~~~l~~~i~~~~~~~~aDllLviGTSl~V~Paa~l~~~~~-~g~~~v~IN  252 (361)
T 1q14_A          176 --VCGELVKPAIVFFGEDLPDSFSETWLNDSEWLREKITTSGKHPQQPLVIVVGTSLAVYPFASLPEEIP-RKVKRVLCN  252 (361)
T ss_dssp             --TTCCBEEEEECCBTSCCCHHHHHHHHHHHHHHHHC--------CCCEEEEESCCCCSTTGGGHHHHSC-TTSEEEEES
T ss_pred             --CCCCEeCCCcccccccCCHHHHHHHHHHHHhhhhcchhhhhhccCCEEEEECCCCCchhHHHHHHHHh-cCCeEEEEe
Confidence              899999999999999999877665554             4679999999999999999999997654 699999999


Q ss_pred             CCCCC----CCCCccEEEECcHHHHHHHHHHHcccC--CCCccc
Q 024533          146 LQQTP----KDKKASLVVHAPVDKVIAGVMRHLNLW--IPPYVR  183 (266)
Q Consensus       146 ~~~t~----~d~~adl~I~g~~~evl~~L~~~L~~~--ip~~~~  183 (266)
                      ++++.    .+..+++.|+|+++++|++|++.|||+  ++.+..
T Consensus       253 ~~~t~~~~~~~~~~d~~i~g~~~evl~~L~~~Lg~~~~l~~~~~  296 (361)
T 1q14_A          253 LETVGDFKANKRPTDLIVHQYSDEFAEQLVEELGWQEDFEKILT  296 (361)
T ss_dssp             SSCCHHHHHTCCTTCEEECSCHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             CCCccccccCcccccEEEeCCHHHHHHHHHHHcCChhHHHHHHH
Confidence            99996    246689999999999999999999984  444444

>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5

Probab=100.00  E-value=5e-47  Score=351.96  Aligned_cols=173  Identities=24%  Similarity=0.382  Sum_probs=157.1

Q ss_pred             CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCC--CCcccchhhHHHHhhccCCCCCCC
Q 024533            1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPS--CGVEYMRDFEIETIGMKKTPRRCS   78 (266)
Q Consensus         1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~--C~~~~~~~~~~~~~~~~~~~p~Cp   78 (266)
                      +||++|++|++|+++|++++||||||||||++||+++++|+|+|||++..+|.+  |++.|+.++..+.+. ...+|+|+
T Consensus       111 ~Pn~~H~aLa~L~~~g~~~~viTQNIDgLh~~AG~~~~~VielHGs~~~~~C~~~~C~~~~~~~~~~~~i~-~~~~P~C~  189 (323)
T 1j8f_A          111 KPTICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLEQEDLVEAHGTFYTSHCVSASCRHEYPLSWMKEKIF-SEVTPKCE  189 (323)
T ss_dssp             CCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCGGGEEETTEEEEEEEESCTTTCCEECHHHHHHHHH-TTCCCBCT
T ss_pred             CCCHHHHHHHHHHhcCCCcEEEeecccchHHHcCCCcccEEEeeCCcceeecCCCccCccccHHHHHHhhc-cCCCCCCc
Confidence            699999999999999999999999999999999998899999999999999999  999998776554443 34589999


Q ss_pred             CCCCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC-----
Q 024533           79 DVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK-----  153 (266)
Q Consensus        79 ~~~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~-----  153 (266)
                        .|||.|||+||||||++|++.++.+.+++++||++|||||||+|+|+++|+..+.+ ++++|+||+++++.+.     
T Consensus       190 --~Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V~P~a~l~~~~~~-~~~~v~IN~~~t~~~~~~~~~  266 (323)
T 1j8f_A          190 --DCQSLVKPDIVFFGESLPARFFSCMQSDFLKVDLLLVMGTSLQVQPFASLISKAPL-STPRLLINKEKAGQSDPFLGM  266 (323)
T ss_dssp             --TTCCBEEEEECCBTSCCCHHHHHHHHHGGGSCSEEEEESSCSCSHHHHHHHTTSCT-TCCEEEEESSCCCCCCHHHHH
T ss_pred             --CCCCccCCCEEecCCcCCHHHHHHHHHHHhCCCEEEEEeeCcccHHHHHHHHHHHc-CCcEEEEeCCCCCCCcccccc
Confidence              99999999999999999999899999999999999999999999999999977654 4567899999998654     


Q ss_pred             ---------------CccEEEECcHHHHHHHHHHHcccC
Q 024533          154 ---------------KASLVVHAPVDKVIAGVMRHLNLW  177 (266)
Q Consensus       154 ---------------~adl~I~g~~~evl~~L~~~L~~~  177 (266)
                                     .+|+.|.|+|+++|++|++.|||+
T Consensus       267 ~~~~~~~~~~~~~~~~~d~~i~gd~~~~l~~L~~~lgw~  305 (323)
T 1j8f_A          267 IMGLGGGMDFDSKKAYRDVAWLGECDQGCLALAELLGWK  305 (323)
T ss_dssp             HHHHHTCCCSSSTTCCSEEEEESCHHHHHHHHHHHTTCH
T ss_pred             cccccccccccccccceeEEEeCCHHHHHHHHHHHcCCc
Confidence                           379999999999999999999984

>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*

Probab=100.00  E-value=7.7e-47  Score=345.93  Aligned_cols=168  Identities=30%  Similarity=0.418  Sum_probs=150.3

Q ss_pred             CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHH---hhccCCCCCC
Q 024533            1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIET---IGMKKTPRRC   77 (266)
Q Consensus         1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~---~~~~~~~p~C   77 (266)
                      +||++|++|++|++.|++++||||||||||+|||+  ++|+|||||++..+|..|++.|+.+.....   ......+|+|
T Consensus       108 ~Pn~~H~aLa~Le~~g~~~~viTQNVDgLh~rAG~--~~vielHGs~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~P~C  185 (290)
T 3u31_A          108 EINNGHVALSTLESLGYLKSVVTQNVDGLHEASGN--TKVISLHGNVFEAVCCTCNKIVKLNKIMLQKTSHFMHQLPPEC  185 (290)
T ss_dssp             CCCHHHHHHHHHHHTTCEEEEEESCCSCHHHHTTC--SCEEETTEEEEEEEETTTCCEEECCTGGGSTTSSTTTSSSCBC
T ss_pred             CCCHHHHHHHHHHHcCCCceEEEechHHHHHHcCC--CcEEEecCCcCcceeCCCCCcCChhHhhhcccccccccCCCCC
Confidence            69999999999999999999999999999999998  799999999999999999998876543311   1112357999


Q ss_pred             CCCCCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC-Ccc
Q 024533           78 SDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK-KAS  156 (266)
Q Consensus        78 p~~~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~-~ad  156 (266)
                      +   |||.|||+||||||++|++.+++|.+++++||++|||||||+|+|+++|+..|+++|+++|+||+++|+.+. .++
T Consensus       186 ~---Cgg~lrPdVV~FGE~lp~~~~~~a~~~~~~aDllLviGTSl~V~Paa~l~~~a~~~g~~~v~IN~~~t~~~~~~~d  262 (290)
T 3u31_A          186 P---CGGIFKPNIILFGEVVSSDLLKEAEEEIAKCDLLLVIGTSSTVSTATNLCHFACKKKKKIVEINISKTYITNKMSD  262 (290)
T ss_dssp             T---TSCBEEEEECCBTSBCCHHHHHHHHHHHHHCSEEEEESCCSCSHHHHHHHHHHHHTTCCEEEEESSCCTTTTTTCS
T ss_pred             C---CCCEECCeEEEcCCCCCHHHHHHHHHHHhcCCEEEEECcCCcchhHHHHHHHHHHcCCEEEEECCCCCCCCCccce
Confidence            6   999999999999999999999999999999999999999999999999999988999999999999999974 689


Q ss_pred             EEEECcHHHHHHHHHHHc
Q 024533          157 LVVHAPVDKVIAGVMRHL  174 (266)
Q Consensus       157 l~I~g~~~evl~~L~~~L  174 (266)
                      +.|+|+++++++ +++.|
T Consensus       263 ~~i~g~a~~vl~-~~~~l  279 (290)
T 3u31_A          263 YHVCAKFSELTK-VANIL  279 (290)
T ss_dssp             EEEESCGGGHHH-HHHHH
T ss_pred             EEEECCHHHHHH-HHHHH
Confidence            999999999885 54544

>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5

Probab=100.00  E-value=7e-47  Score=336.74  Aligned_cols=164  Identities=23%  Similarity=0.390  Sum_probs=141.0

Q ss_pred             CCCHHHHHHHHHHH-cCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCCC
Q 024533            1 MPSITHMALVELEK-AGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSD   79 (266)
Q Consensus         1 ~Pn~~H~aLa~L~~-~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~   79 (266)
                      +||++|++|++|++ .|++.+||||||||||++||.  ++|+|||||++..+|.+|++.|+.+..+    .....|.|+ 
T Consensus        66 ~Pn~~H~~La~L~~~~g~~~~viTQNvD~Lh~~AG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~----~~~~~p~c~-  138 (235)
T 1s5p_A           66 QPNAAHLALAKLQDALGDRFLLVTQNIDNLHERAGN--TNVIHMHGELLKVRCSQSGQVLDWTGDV----TPEDKCHCC-  138 (235)
T ss_dssp             CCCHHHHHHHHHHHHHGGGEEEEESCCSSHHHHHTC--CSCEETTEEEEEEEETTTCCEEECCSCC----CSSCCC----
T ss_pred             CCCHHHHHHHHHHHhhCCceEEEeccccchhhhcCC--CcEEEecCCceEEEeCCCCCcccchhhc----cCCCCCCCC-
Confidence            69999999999999 699999999999999999995  7999999999999999999988765421    122345665 


Q ss_pred             CCCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCCccEEE
Q 024533           80 VKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVV  159 (266)
Q Consensus        80 ~~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I  159 (266)
                       .|||.|||+||||||+ | +.++++.+++++||++|||||||+|+|+++|+..+.++|+++|+||+++++.|..+++.|
T Consensus       139 -~Cgg~lrP~vv~FGE~-p-~~~~~a~~~~~~adl~lviGTSl~V~Pa~~l~~~a~~~g~~~i~iN~~~t~~~~~~~~~i  215 (235)
T 1s5p_A          139 -QFPAPLRPHVVWFGEM-P-LGMDEIYMALSMADIFIAIGTSGHVYPAAGFVHEAKLHGAHTVELNLEPSQVGNEFAEKY  215 (235)
T ss_dssp             -----CEEEEECCTTSC-C-SSHHHHHHHHHHCSEEEEESCCTTEETGGGHHHHHHHTTCEEEEEESSSCC---CCSEEE
T ss_pred             -CCCCeecCcEEEeCCC-H-HHHHHHHHHHhcCCEEEEECcCCchhhHHHHHHHHHHcCCeEEEEECCCCCCCccccEEE
Confidence             8999999999999999 7 468999999999999999999999999999999888899999999999999999999999


Q ss_pred             ECcHHHHHHHHHHHc
Q 024533          160 HAPVDKVIAGVMRHL  174 (266)
Q Consensus       160 ~g~~~evl~~L~~~L  174 (266)
                      +|+++++|++|++.|
T Consensus       216 ~~~~~~~l~~l~~~l  230 (235)
T 1s5p_A          216 YGPASQVVPEFVEKL  230 (235)
T ss_dssp             ESCHHHHHHHHHHHH
T ss_pred             eCCHHHHHHHHHHHH
Confidence            999999999999876

>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*

Probab=94.85  E-value=0.095  Score=50.86  Aligned_cols=71  Identities=14%  Similarity=0.074  Sum_probs=50.6

Q ss_pred             HHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC--CccEEEECcHHHHHHHHHHHcc
Q 024533          105 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       105 a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~--~adl~I~g~~~evl~~L~~~L~  175 (266)
                      +.+.+.+||++|++|+.+.-.............+.++|.|+.++...++  ..++.|.|++.++|..|.+.+.
T Consensus       266 ~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~ii~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~  338 (568)
T 2c31_A          266 RAFALAQCDVCVLIGARLNWLMQHGKGKTWGDELKKYVQIDIQANEMDSNQPIAAPVVGDIKSAVSLLRKALK  338 (568)
T ss_dssp             HHHHHHHCSEEEEESCCCSGGGGGGCSGGGTTSCCEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHHHT
T ss_pred             HHhhhccCCEEEEECCCCccccccCcccccCCCCCeEEEEeCCHHHhcCCcCCCceeeCCHHHHHHHHHHhhh
Confidence            3456789999999999986433211111111147789999998876543  4589999999999999988774

>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*

Probab=94.24  E-value=0.14  Score=49.60  Aligned_cols=81  Identities=17%  Similarity=0.245  Sum_probs=54.1

Q ss_pred             cCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHHH
Q 024533           93 WEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGV  170 (266)
Q Consensus        93 FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~L  170 (266)
                      |.|..|...=..+.+.+.+||++|++|+.+.-.....-.  ....+.++|.|+.++...+  ...++.|.|++.++|..|
T Consensus       252 ~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~~~~--~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L  329 (564)
T 2q28_A          252 LEDTHPLSAAAARSFALANADVVMLVGARLNWLLAHGKK--GWAADTQFIQLDIEPQEIDSNRPIAVPVVGDIASSMQGM  329 (564)
T ss_dssp             SCTTCTTBCGGGHHHHHHHCSEEEEESCCCSGGGGGGTT--TSCTTCEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHH
T ss_pred             CCCCChhhcChHHHhHhhcCCEEEEECCccccccccccc--ccCCCCeEEEEeCCHHHhcCCCCCCeEEEcCHHHHHHHH
Confidence            345554322122345678999999999998532221101  1124678999999887655  345899999999999999


Q ss_pred             HHHcc
Q 024533          171 MRHLN  175 (266)
Q Consensus       171 ~~~L~  175 (266)
                      .+.+.
T Consensus       330 ~~~l~  334 (564)
T 2q28_A          330 LAELK  334 (564)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            88764

>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*

Probab=93.62  E-value=0.2  Score=48.92  Aligned_cols=70  Identities=19%  Similarity=0.271  Sum_probs=52.1

Q ss_pred             HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC--CccEEEECcHHHHHHHHHHHcc
Q 024533          104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~--~adl~I~g~~~evl~~L~~~L~  175 (266)
                      .+.+.+.+||++|.+|+.+.-.-...+..  ...+.++|.|+.++...++  ..++.|.|++.++|..|.+.+.
T Consensus       271 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~  342 (590)
T 1ybh_A          271 YANYAVEHSDLLLAFGVRFDDRVTGKLEA--FASRAKIVHIDIDSAEIGKNKTPHVSVCGDVKLALQGMNKVLE  342 (590)
T ss_dssp             HHHHHHHHCSEEEEESCCCCHHHHSSGGG--TTTTSEEEEEESCTTTTTSSSCCSEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCEEEEEcCCCCccccCcccc--cCCCCeEEEEECCHHHhCCCcCCCeEEecCHHHHHHHHHHhhh
Confidence            45667789999999999985332222211  2246789999999887653  4689999999999999987764

>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*

Probab=93.43  E-value=0.17  Score=49.62  Aligned_cols=69  Identities=22%  Similarity=0.385  Sum_probs=52.0

Q ss_pred             HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC--CccEEEECcHHHHHHHHHHHccc
Q 024533          104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLNL  176 (266)
Q Consensus       104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~--~adl~I~g~~~evl~~L~~~L~~  176 (266)
                      .+.+.+.+||++|++|+.+....+..    ....++++|.|+.++...++  ..++.|.||+.++|..|.+.+..
T Consensus       269 ~~~~~l~~aDlvl~iG~~~~~~~~~~----~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~  339 (603)
T 4feg_A          269 PANEALAQADVVLFVGNNYPFAEVSK----AFKNTRYFLQIDIDPAKLGKRHKTDIAVLADAQKTLAAILAQVSE  339 (603)
T ss_dssp             HHHHHHHHCSEEEEESCCCTTTTTTT----TTTTCSEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHTCCC
T ss_pred             HHHHHHHhCCEEEEECCCCCcccccc----cCCCCCeEEEEeCCHHHhCCccCCCEEEEeCHHHHHHHHHHhhhc
Confidence            35567789999999999987432211    12346889999999877653  46899999999999999887753

>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D*

Probab=93.41  E-value=0.1  Score=47.63  Aligned_cols=58  Identities=16%  Similarity=0.131  Sum_probs=48.3

Q ss_pred             CCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCC-CCCCCccEEEECcHHHHHHHHHHHc
Q 024533          112 ADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQT-PKDKKASLVVHAPVDKVIAGVMRHL  174 (266)
Q Consensus       112 aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t-~~d~~adl~I~g~~~evl~~L~~~L  174 (266)
                      |+|.|.+|-|.+++-.+.|     +.-..+|-||.++. +.=+.+|+.|-||.-+++|+|.++|
T Consensus       260 ~~lYiA~GISGAiQHlaGm-----~~s~~IVAIN~D~~ApIF~~ADygiVgDl~~vvP~L~~~l  318 (320)
T 1o97_D          260 CKLYVAMGISGSIQHMAGM-----KHVPTIIAVNTDPGASIFTIAKYGIVADIFDIEEELKAQL  318 (320)
T ss_dssp             CSEEEEESCCCCHHHHHHH-----TTCSEEEEECSCTTCGGGGTCSEEECSCHHHHHHHHHHHC
T ss_pred             cceEEEEeccCcHHHHhhc-----ccCCEEEEEeCCCCCCcccccCeEEeeeHHHHHHHHHHHH
Confidence            4999999999999877666     23346888999875 4446889999999999999999886

>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}

Probab=93.40  E-value=0.21  Score=48.57  Aligned_cols=68  Identities=15%  Similarity=0.116  Sum_probs=50.8

Q ss_pred             HHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHHHHHHcc
Q 024533          106 EENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       106 ~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~L~~~L~  175 (266)
                      ...+.+||++|.+|+.+.-.+...+.  ....++++|.|+.++...+  ...++.|.|++.++|+.|.+.+.
T Consensus       284 ~~~~~~aDlvl~~G~~~~~~~~~~~~--~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~  353 (578)
T 3lq1_A          284 IIDKLTPEVVIRFGSMPVSKPLKNWL--EQLSDIRFYVVDPGAAWKDPIKAVTDMIHCDERFLLDIMQQNMP  353 (578)
T ss_dssp             HHHHTCCSEEEEESSCCSCHHHHHHH--HHCCSSEEEEECTTCCCCCTTCCCSEEECSCHHHHHHHHHHHSC
T ss_pred             ccccCCCCEEEEeCCcccchhHHHHH--hcCCCCEEEEECCCCCcCCCCcCceEEEEeCHHHHHHHHHhhcc
Confidence            34577999999999976543333331  1235789999999987665  34689999999999999988764

>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*

Probab=92.99  E-value=0.18  Score=48.96  Aligned_cols=68  Identities=13%  Similarity=0.047  Sum_probs=50.7

Q ss_pred             HHHHhhcCCEEEEEccC-CChhhcccchHHHhcCCCEEEEECCCCCCCCC--CccEEEECcHHHHHHHHHHHcc
Q 024533          105 AEENCRMADVVLCLGTS-LQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       105 a~~~~~~aDLlLvlGTS-L~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~--~adl~I~g~~~evl~~L~~~L~  175 (266)
                      +.+.+.+||++|.+|+. +.-.....+.   ...+.++|.||.++...++  ..++.|.|++.++|+.|.+.+.
T Consensus       281 ~~~~l~~aDlvl~iG~~~~~~~~~~~~~---~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~  351 (573)
T 2iht_A          281 LQTMFAPVDLVLTVGYDYAEDLRPSMWQ---KGIEKKTVRISPTVNPIPRVYRPDVDVVTDVLAFVEHFETATA  351 (573)
T ss_dssp             HHHHHTTCCEEEEETCCGGGCCCHHHHC---CSSCCEEEEEESSCCSCTTTCCCSEEEESCHHHHHHHHHHHTT
T ss_pred             HHHHHhhCCEEEEECCCccccccccccC---CCCCCeEEEEeCCHHHhCCCcCCCeeEeCCHHHHHHHHHHhcc
Confidence            45677899999999998 6322222221   1146789999999887654  4689999999999999988774

>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*

Probab=92.63  E-value=0.26  Score=47.82  Aligned_cols=67  Identities=12%  Similarity=0.294  Sum_probs=49.4

Q ss_pred             HHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC--CccEEEECcHHHHHHHHHHHcc
Q 024533          105 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       105 a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~--~adl~I~g~~~evl~~L~~~L~  175 (266)
                      +.+.+++||++|.+|+.........+    ...+.++|.|+.++...++  ..++.|.|++.++|..|.+.+.
T Consensus       268 ~~~~l~~aDlvl~lG~~~~~~~~~~~----~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~  336 (566)
T 1ozh_A          268 GDRLLQLADLVICIGYSPVEYEPAMW----NSGNATLVHIDVLPAYEERNYTPDVELVGDIAGTLNKLAQNID  336 (566)
T ss_dssp             HHHHHHHCSEEEEESCCGGGSCGGGT----CCSCSEEEEEESSCCCCBTTBCCSEEEESCHHHHHHHHHHTCC
T ss_pred             HHHHHHhCCEEEEECCCCCcCCcccc----CCCCCcEEEEeCCHHHhCCCCCCCEEEEeCHHHHHHHHHHhcc
Confidence            45577889999999995322222222    1236799999999887654  4689999999999999988764

>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*

Probab=92.56  E-value=0.23  Score=48.39  Aligned_cols=69  Identities=22%  Similarity=0.153  Sum_probs=51.4

Q ss_pred             HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC--CccEEEECcHHHHHHHHHHHcc
Q 024533          104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~--~adl~I~g~~~evl~~L~~~L~  175 (266)
                      .+.+.+.+||++|++|+.+.-.... +.  ....+.++|.||.++...++  ..++.|.|++.++|..|.+.+.
T Consensus       264 ~~~~~l~~aDlvl~iG~~~~~~~~~-~~--~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~  334 (589)
T 2pgn_A          264 SANDMMAAADFVLVLGSRLSDWGIA-QG--YITKMPKFVHVDTDPAVLGTFYFPLLSVVADAKTFMEQLIEVLP  334 (589)
T ss_dssp             HHHHHHHHCSEEEEESCCCCTTTTT-TT--TTCCCCSEEEEESCGGGTTSSSCCSEEEECCHHHHHHHHHHHGG
T ss_pred             HHHHHHhhCCEEEEECCCccccccc-cc--ccCCCCeEEEEeCCHHHHCCCcCCCEEEEeCHHHHHHHHHHHhh
Confidence            3456778899999999987543322 21  11246789999999876653  4689999999999999988774

>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*

Probab=92.31  E-value=0.24  Score=47.82  Aligned_cols=65  Identities=12%  Similarity=0.237  Sum_probs=49.9

Q ss_pred             HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC--CccEEEECcHHHHHHHHHHHcc
Q 024533          104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~--~adl~I~g~~~evl~~L~~~L~  175 (266)
                      .+.+.+.+||++|++|+.+....+       ...+.++|.|+.++...++  ..++.|.|++.++|..|.+.+.
T Consensus       258 ~~~~~~~~aDlvl~iG~~~~~~~~-------~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~  324 (549)
T 3eya_A          258 SGFHTMMNADTLVLLGTQFPYRAF-------YPTDAKIIQIDINPASIGAHSKVDMALVGDIKSTLRALLPLVE  324 (549)
T ss_dssp             HHHHHHHHCSEEEEESCCCCCGGG-------SCSSSEEEEEESCGGGTTSSSCCSEEEECCHHHHHHHHGGGSC
T ss_pred             HHHHHHHhCCEEEEECCCCCcccc-------CCCCCeEEEEeCCHHHhCCCCCCCeEEEeCHHHHHHHHHHhcc
Confidence            345677899999999998753221       2356789999998876553  4588999999999999987764

>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*

Probab=91.92  E-value=0.26  Score=47.71  Aligned_cols=66  Identities=15%  Similarity=0.189  Sum_probs=50.2

Q ss_pred             hhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC--CccEEEECcHHHHHHHHHHHcc
Q 024533          109 CRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       109 ~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~--~adl~I~g~~~evl~~L~~~L~  175 (266)
                      +.+||++|.+|+.+.-.....+-.. ...+.++|.||.++...++  ..++.|.|++.++|..|.+.+.
T Consensus       267 ~~~aDlvl~iG~~~~~~~~~~~~~~-~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~  334 (563)
T 2uz1_A          267 DAAPDLVLMLGARFGLNTGHGSGQL-IPHSAQVIQVDPDACELGRLQGIALGIVADVGGTIEALAQATA  334 (563)
T ss_dssp             TCCCSEEEEESCCSSGGGTTTSCSS-SCTTSEEEEECSCGGGTTSSSCCSEEECSCHHHHHHHHHHHHT
T ss_pred             hcCCCEEEEECCCCccccccccccc-CCCCCeEEEEECCHHHhCCCCCCCeEEEcCHHHHHHHHHHhhh
Confidence            7889999999999876554332111 1226799999999877653  4689999999999999988774

>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*

Probab=91.66  E-value=0.36  Score=46.76  Aligned_cols=65  Identities=17%  Similarity=0.054  Sum_probs=47.4

Q ss_pred             HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC--CccEEEECcHHHHHHHH
Q 024533          104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGV  170 (266)
Q Consensus       104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~--~adl~I~g~~~evl~~L  170 (266)
                      .+.+.+.+||++|++|+.+.-.+...+..  .....++|.|+.++...++  ..++.|.|++.++|..|
T Consensus       271 ~~~~~~~~aDlvl~iG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~l  337 (556)
T 3hww_A          271 KATSELQQAQIVVQLGSSLTGKRLLQWQA--SCEPEEYWIVDDIEGRLDPAHHRGRRLIANIADWLELH  337 (556)
T ss_dssp             HHHHHHTTCSEEEEESBCCCCHHHHHHHH--HCCCSEEEEEESSCSCCCTTCCSEEEEESCHHHHHHHS
T ss_pred             hhhhcccCCCEEEEcCCCcccHHHHHHHh--cCCCCeEEEECCCCccCCCCCCceEEEEcCHHHHHHhc
Confidence            35567789999999999986444333321  1233489999999877653  46899999999998865

>1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R*

Probab=91.58  E-value=0.31  Score=44.36  Aligned_cols=60  Identities=20%  Similarity=0.252  Sum_probs=49.7

Q ss_pred             cCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCC-CCCCCccEEEECcHHHHHHHHHHHcc
Q 024533          111 MADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQT-PKDKKASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       111 ~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t-~~d~~adl~I~g~~~evl~~L~~~L~  175 (266)
                      ..+|.|.+|-|.+++-.+.|     +.-..+|-||.++. +.=+.+|+.|-||.-+++|+|.++|.
T Consensus       253 ~P~lYiA~GISGAiQHlaGm-----~~s~~IVAIN~D~~ApIf~~ADygiVgDl~~v~P~L~~~l~  313 (315)
T 1efv_A          253 APELYIAVGISGAIQHLAGM-----KDSKTIVAINKDPEAPIFQVADYGIVADLFKVVPEMTEILK  313 (315)
T ss_dssp             CCSEEEEESCCCCHHHHTTT-----TTCSEEEEEESCTTCGGGGTCSEEEESCHHHHHHHHHHHTC
T ss_pred             CcceEEEecccCcHHHHhhc-----ccCCEEEEEeCCCCCCcchhcCeEEeeeHHHHHHHHHHHHh
Confidence            47899999999999888776     23346888999875 44468899999999999999999874

>1efp_A ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3 c.31.1.2

Probab=91.45  E-value=0.3  Score=44.27  Aligned_cols=59  Identities=17%  Similarity=0.218  Sum_probs=48.6

Q ss_pred             cCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCC-CCCCCccEEEECcHHHHHHHHHHHc
Q 024533          111 MADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQT-PKDKKASLVVHAPVDKVIAGVMRHL  174 (266)
Q Consensus       111 ~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t-~~d~~adl~I~g~~~evl~~L~~~L  174 (266)
                      ..+|.|.+|-|.+++-.+.|     +.-..+|-||.++. +.=+.+|+.|-||.-+++|+|.++|
T Consensus       248 ~P~lYiA~GISGAiQHlaGm-----~~s~~IVAIN~D~~ApIF~~ADygiVgDl~~v~P~L~~~l  307 (307)
T 1efp_A          248 APELYVAVGISGAIQHLAGM-----KDSKVIVAINKDEEAPIFQIADYGLVGDLFSVVPELTGKL  307 (307)
T ss_dssp             CCSEEEEESCCCCHHHHTTT-----TTCSEEEEEESCTTCGGGGTCSEEEESCHHHHHHHHHHTC
T ss_pred             CCceEEEEeccCcHHHHhhh-----ccCCEEEEEeCCCCCCcccccCeEEeeeHHHHHHHHHhhC
Confidence            47899999999999888776     23346888999875 4446889999999999999998764

>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*

Probab=90.95  E-value=0.28  Score=46.98  Aligned_cols=71  Identities=13%  Similarity=0.156  Sum_probs=51.7

Q ss_pred             HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC-CccEEEECcHHHHHHHHHHHcc
Q 024533          104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK-KASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~-~adl~I~g~~~evl~~L~~~L~  175 (266)
                      .+.+.+++||++|++|+.+.-......... ...+.++|.|+.++...++ ..++.|.+++.++|..|.+.+.
T Consensus       259 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~-~~~~~~~i~id~d~~~~~~~~~~~~i~~d~~~~l~~L~~~~~  330 (528)
T 1q6z_A          259 AISQLLEGHDVVLVIGAPVFRYHQYDPGQY-LKPGTRLISVTCDPLEAARAPMGDAIVADIGAMASALANLVE  330 (528)
T ss_dssp             HHHHHHTTCSEEEEESSCTTCCCSCCCSCS-SCTTCEEEEEESCHHHHHHCSSSEEEESCHHHHHHHHHHHSC
T ss_pred             HHHHHHhcCCEEEEECCCCccccccCcCCc-CCCCCeEEEEeCCHHHhCCCCCCeeEeCCHHHHHHHHHHHhh
Confidence            456678899999999998765554433110 1246789999998754221 5689999999999999988764

>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}

Probab=90.75  E-value=0.33  Score=47.60  Aligned_cols=70  Identities=13%  Similarity=0.181  Sum_probs=50.8

Q ss_pred             HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC--CccEEEECcHHHHHHHHHHHcc
Q 024533          104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~--~adl~I~g~~~evl~~L~~~L~  175 (266)
                      .+.+.+.+||++|++|+.+.-.....+..  ...+.++|.|+.++...++  ..++.|.|++.++|..|.+.+.
T Consensus       286 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~  357 (616)
T 2pan_A          286 YGNATLLASDMVFGIGNRFANRHTGSVEK--YTEGRKIVHIDIEPTQIGRVLCPDLGIVSDAKAALTLLVEVAQ  357 (616)
T ss_dssp             HHHHHHHHCSEEEEESCCCCHHHHSSHHH--HHTTCEEEEEESCGGGTTSSSCCSSCEECCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCEEEEECCCCcccccCcccc--cCCCCeEEEEeCCHHHhCCCCCCCeEEEcCHHHHHHHHHHHhh
Confidence            45667889999999999976322222211  2246789999998866543  4578899999999999987663

>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}

Probab=90.67  E-value=0.57  Score=45.77  Aligned_cols=66  Identities=15%  Similarity=0.176  Sum_probs=48.1

Q ss_pred             HHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC--CccEEEECcHHHHHHHHHHHcc
Q 024533          107 ENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       107 ~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~--~adl~I~g~~~evl~~L~~~L~  175 (266)
                      +.++ +|++|++|+.+.-.....+.  ....+.++|.|+.++...++  ..++.|.|++.++|..|.+.+.
T Consensus       306 ~~~~-~Dlvl~iG~~~~~~~~~~~~--~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~  373 (604)
T 2x7j_A          306 RKLR-PDVVIRFGPMPVSKPVFLWL--KDDPTIQQIVIDEDGGWRDPTQASAHMIHCNASVFAEEIMAGLT  373 (604)
T ss_dssp             HHHC-CSEEEEESSCCSCHHHHHHH--HHCTTSEEEEECTTCCCCCTTSCCSEEECSCHHHHHHHHHHTSC
T ss_pred             hhcC-CCEEEEECCcCccHHHHHHH--hhCCCCeEEEECCCCCccCCCccceEEEEcCHHHHHHHHHHhhc
Confidence            3444 89999999987533322221  11226789999999987654  4589999999999999988773

>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*

Probab=90.11  E-value=0.69  Score=45.07  Aligned_cols=67  Identities=16%  Similarity=0.299  Sum_probs=50.8

Q ss_pred             HHHHHhhcCCEEEEEccCCChhhc-ccchHHHhcCCCEEEEECCCCCCCCC--CccEEEECcHHHHHHHHHHHcc
Q 024533          104 PAEENCRMADVVLCLGTSLQITPA-CNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       104 ~a~~~~~~aDLlLvlGTSL~V~Pa-~~L~~~a~~~g~~lViIN~~~t~~d~--~adl~I~g~~~evl~~L~~~L~  175 (266)
                      .+.+.+.+||++|++|+.+..... ...    . .+.++|.|+.++...++  ..++.|.|++..++..|.+.+.
T Consensus       262 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~----~-~~~~~i~id~d~~~~~~~~~~~~~i~gd~~~~l~~L~~~l~  331 (590)
T 1v5e_A          262 PANETILEADTVLFAGSNFPFSEVEGTF----R-NVDNFIQIDIDPAMLGKRHHADVAILGDAALAIDEILNKVD  331 (590)
T ss_dssp             HHHHHHHHCSEEEEESCCCTTTTTTTTT----T-TCSEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHHSC
T ss_pred             HHHHHHHhCCEEEEECCCCcchhccccC----C-CCCeEEEEeCCHHHHCCCcCCCeEEEcCHHHHHHHHHHhhc
Confidence            456678899999999998854431 001    1 35789999998876653  4579999999999999998875

>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*

Probab=88.93  E-value=0.74  Score=45.93  Aligned_cols=71  Identities=14%  Similarity=0.269  Sum_probs=49.0

Q ss_pred             HHHHhhcCCEEEEEccCCChhhcc---cchHHHh----cCCCEEEEECCCCCCCCC--CccEEEECcHHHHHHHHHHHcc
Q 024533          105 AEENCRMADVVLCLGTSLQITPAC---NLPLKSL----RGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       105 a~~~~~~aDLlLvlGTSL~V~Pa~---~L~~~a~----~~g~~lViIN~~~t~~d~--~adl~I~g~~~evl~~L~~~L~  175 (266)
                      +...+.+||++|.+|+.+.-.-..   .+...++    .....+|.|+.++...++  ..++.|.|++..+|..|.+.+.
T Consensus       350 ~~~~l~~aDlvl~iG~r~~~~~t~~~~~~~~~~~~~~~~~~~~iI~idid~~~~~~~~~~~~~i~gD~~~~l~~L~~~l~  429 (677)
T 1t9b_A          350 ANLAVQNADLIIAVGARFDDRVTGNISKFAPEARRAAAEGRGGIIHFEVSPKNINKVVQTQIAVEGDATTNLGKMMSKIF  429 (677)
T ss_dssp             HHHHHHHCSEEEEESCCCCTTTSCSGGGSSHHHHHHHHTTSCEEEEEESCGGGSSSSSCCSEEEESCHHHHHHHHHTTSC
T ss_pred             HHHHHhcCCEEEEECCccCcccccCccccCcccccccccCCceEEEEECCHHHhCCcccCCEEEeCCHHHHHHHHHHHhh
Confidence            445678999999999987532222   2211222    233448888888776543  4589999999999999988764

>1pno_A NAD(P) transhydrogenase subunit beta; nucleotide binding fold, oxidoreductase; HET: NAP; 2.10A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1pnq_A* 1xlt_C* 2oor_C* 1ptj_C* 2oo5_C*

Probab=86.62  E-value=0.69  Score=38.64  Aligned_cols=87  Identities=16%  Similarity=0.353  Sum_probs=60.1

Q ss_pred             ccEEEcCCCCChh---chhHHHHHhhcCCEEEEEccCCChhhccc---------chHHHhcCCCEEEEECCCCCC-C---
Q 024533           88 DTVLDWEDALPPV---EMNPAEENCRMADVVLCLGTSLQITPACN---------LPLKSLRGGGKIVIVNLQQTP-K---  151 (266)
Q Consensus        88 P~Vv~FgE~lp~~---~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~---------L~~~a~~~g~~lViIN~~~t~-~---  151 (266)
                      -+|++=+-.+|.+   +++.....+.+.|+.||+|..=.|.|++.         ||-.-.-+-..+|++++.-.. +   
T Consensus        72 mNVLLAEA~VPYd~v~EMdeIN~df~~tDv~lVIGANDvvNpaA~~dp~SpI~GMPvl~v~kAk~ViV~KRsm~~GyAgv  151 (180)
T 1pno_A           72 MNVLLAEANVPYDEVFELEEINSSFQTADVAFVIGANDVTNPAAKTDPSSPIYGMPILDVEKAGTVLFIKRSMASGYAGV  151 (180)
T ss_dssp             HHHHHHHTTCCGGGEEEHHHHGGGGGGCSEEEEESCCGGGCGGGTTCTTSTTTTCCCCCGGGSSEEEEEESSSCCCTTCC
T ss_pred             ceEEEEeeCCCHHHHhhHHHHhhhhhhcCEEEEeccccccCchhccCCCCCcCCCeeechhhCCEEEEEECCCCCCcCCC
Confidence            4677776777765   36667778899999999999999988764         331111122356666665432 1   


Q ss_pred             C-----CCccEEEECcHHHHHHHHHHHc
Q 024533          152 D-----KKASLVVHAPVDKVIAGVMRHL  174 (266)
Q Consensus       152 d-----~~adl~I~g~~~evl~~L~~~L  174 (266)
                      +     +..+..+.||+.+.+.+|.+.|
T Consensus       152 ~NpLF~~~nt~MlfGDAK~~~~~l~~~l  179 (180)
T 1pno_A          152 ENELFFRNNTMMLFGDAKKMTEQIVQAM  179 (180)
T ss_dssp             CCGGGTSTTEEEEESCHHHHHHHHHHHH
T ss_pred             cCcceecCCceEEeccHHHHHHHHHHHh
Confidence            1     3457789999999999998875

>1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold reverse binding of N oxidoreductase; HET: NAP; 2.00A {Homo sapiens} SCOP: c.31.1.4 PDB: 1pt9_A* 1u31_A*

Probab=85.05  E-value=0.75  Score=39.26  Aligned_cols=89  Identities=17%  Similarity=0.261  Sum_probs=62.0

Q ss_pred             cccEEEcCCCCChh---chhHHHHHhhcCCEEEEEccCCChhhccc---------chHHHhcCCCEEEEECCCCCC-C--
Q 024533           87 KDTVLDWEDALPPV---EMNPAEENCRMADVVLCLGTSLQITPACN---------LPLKSLRGGGKIVIVNLQQTP-K--  151 (266)
Q Consensus        87 rP~Vv~FgE~lp~~---~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~---------L~~~a~~~g~~lViIN~~~t~-~--  151 (266)
                      ..+|++=+-.+|.+   +++.....+.+.|+.||||..=.|.|++.         ||-.-.-+-..+|++++.-.. +  
T Consensus        93 hMNVLLAEA~VPYd~v~EMdeIN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvL~v~kAk~ViV~KRsm~~GyAg  172 (207)
T 1djl_A           93 QLNVLLAEAGVPYDIVLEMDEINHDFPDTDLVLVIGANDTVNSAAQEDPNSIIAGMPVLEVWKSKQVIVMKRSLGVGYAA  172 (207)
T ss_dssp             HHHHHHHHTTCCGGGEEEHHHHGGGGGGCSEEEEESCCGGGCTHHHHCTTSTTTTCCCCCGGGSSEEEEEESSSCCCTTC
T ss_pred             CCcEEEEEeCCCHHHHhhHHHHhhhhhhcCEEEEeccccccCCccccCCCCCccCCeeecceecCEEEEEECCCCCCcCC
Confidence            35777777778865   46667778999999999999999977763         332111122356666666433 1  


Q ss_pred             -C-----CCccEEEECcHHHHHHHHHHHcc
Q 024533          152 -D-----KKASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       152 -d-----~~adl~I~g~~~evl~~L~~~L~  175 (266)
                       +     +..+..+.||+.+.+.+|.+.|.
T Consensus       173 v~NpLF~~~nt~MlfGDAK~~~~~l~~~l~  202 (207)
T 1djl_A          173 VDNPIFYKPNTAMLLGDAKKTCDALQAKVR  202 (207)
T ss_dssp             CCCGGGGSTTEEEEESCHHHHHHHHHHHHH
T ss_pred             CcCcceecCCceEEeccHHHHHHHHHHHHH
Confidence             1     34567899999999999998874

>2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductas; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A* 1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C*

Probab=84.89  E-value=0.74  Score=39.20  Aligned_cols=88  Identities=16%  Similarity=0.344  Sum_probs=61.1

Q ss_pred             cccEEEcCCCCChh---chhHHHHHhhcCCEEEEEccCCChhhccc---------chHHHhcCCCEEEEECCCCCC-C--
Q 024533           87 KDTVLDWEDALPPV---EMNPAEENCRMADVVLCLGTSLQITPACN---------LPLKSLRGGGKIVIVNLQQTP-K--  151 (266)
Q Consensus        87 rP~Vv~FgE~lp~~---~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~---------L~~~a~~~g~~lViIN~~~t~-~--  151 (266)
                      ..+|++=+-.+|.+   +++.....+.++|+.||||..=.|.|++.         ||-.-.-+-..+|++.+.-.. +  
T Consensus        94 hMNVLLAEA~VPYd~v~EMdeIN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvL~v~kAk~ViV~KRsm~~GyAg  173 (203)
T 2fsv_C           94 HMNVLLAEANVPYDEVFELEEINSSFQTADVAFVIGANDVTNPAAKTDPSSPIYGMPILDVWKAGTVLFIKRSMASGYAG  173 (203)
T ss_dssp             HHHHHHHHTTCCGGGEEEHHHHGGGSTTCSEEEEESCCGGGCGGGTSCTTSTTTTCCCCCGGGSSEEEEEESSSCCCTTC
T ss_pred             CccEEEEEecCCHHHHhhHHHHhhhhhhcCEEEEeccccccCchhhcCCCCCcCCCeeeccccCCEEEEEECCCCCCcCC
Confidence            35777777778866   36667778899999999999999988764         331111122356666665433 1  


Q ss_pred             -C-----CCccEEEECcHHHHHHHHHHHc
Q 024533          152 -D-----KKASLVVHAPVDKVIAGVMRHL  174 (266)
Q Consensus       152 -d-----~~adl~I~g~~~evl~~L~~~L  174 (266)
                       +     +..+..+.||+.+.+.+|.+.|
T Consensus       174 v~NpLF~~~nt~MlfGDAK~~~~~l~~~l  202 (203)
T 2fsv_C          174 VENELFFRNNTMMLFGDAKKMTEQIVQAM  202 (203)
T ss_dssp             CCCGGGGSTTEEEEESCHHHHHHHHHHHC
T ss_pred             CcCcceecCCceEEeccHHHHHHHHHHHh
Confidence             1     3457889999999999998875

>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*

Probab=83.17  E-value=1.3  Score=42.64  Aligned_cols=68  Identities=13%  Similarity=0.137  Sum_probs=46.5

Q ss_pred             HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCCccEEEECcHHHHHHHHHHHcc
Q 024533          104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~g~~~evl~~L~~~L~  175 (266)
                      .+.+.+.+||++|++|+.+.-.+...+..  ...+.++|.||.++...++.  .....++.++|..|.+.+.
T Consensus       271 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~--~~~~~~~~~~l~~L~~~l~  338 (563)
T 2vk8_A          271 EVKEAVESADLILSVGALLSDFNTGSFSY--SYKTKNIVEFHSDHMKIRNA--TFPGVQMKFVLQKLLTTIA  338 (563)
T ss_dssp             HHHHHHHTCSEEEEESCCCCTTTTTTTCC--CCCCSCEEEECSSEEEETTE--EEETCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCEEEEECCCCcccccccccc--CCCCCeEEEEeCCceEECCc--ccCCcCHHHHHHHHHHhhc
Confidence            35567889999999999886554433311  12367899999998766542  3444567888888877653

>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}

Probab=82.80  E-value=1.4  Score=42.48  Aligned_cols=67  Identities=9%  Similarity=0.189  Sum_probs=47.1

Q ss_pred             HHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCCccEEEECcHHHHHHHHHHHcc
Q 024533          105 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       105 a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~g~~~evl~~L~~~L~  175 (266)
                      +.+.+.+||++|++|+.+.-.....+.  ....+.++|.|+.++...++  .....-.+.++|..|.+.+.
T Consensus       270 ~~~~l~~aDlvl~iG~~~~~~~~~~~~--~~~~~~~~i~id~d~~~~~~--~~~~~~~~~~~l~~L~~~l~  336 (566)
T 2vbi_A          270 VQELVETSDALLCIAPVFNDYSTVGWS--AWPKGPNVILAEPDRVTVDG--RAYDGFTLRAFLQALAEKAP  336 (566)
T ss_dssp             HHHHHHTCSEEEEESCCCBTTTTTTTT--SCCCSTTEEEECSSEEEETT--EEEESSCHHHHHHHHHHHCC
T ss_pred             HHHHHHhCCEEEEECCCcccccccccc--ccCCCCcEEEEeCChheeCC--cccCCccHHHHHHHHHHhcc
Confidence            456788999999999987655443332  12246789999999876653  34555567888988887764

>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_A* 2vpw_A* 2vpy_A*

Probab=82.78  E-value=1.6  Score=43.80  Aligned_cols=53  Identities=17%  Similarity=0.176  Sum_probs=40.3

Q ss_pred             hhcCCEEEEEccCCChh-h--cccchHHHhcCCCEEEEECCCCCCCCCCccEEEEC
Q 024533          109 CRMADVVLCLGTSLQIT-P--ACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHA  161 (266)
Q Consensus       109 ~~~aDLlLvlGTSL~V~-P--a~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~g  161 (266)
                      +++||++|++|+-.... |  .......++++|+++|.|++..+.....+|.+|.-
T Consensus       197 ~~~ad~il~~G~n~~~~~p~~~~~~~~~a~~~G~klividPr~t~ta~~Ad~~l~i  252 (765)
T 2vpz_A          197 WENARYIVLIGHHIGEDTHNTQLQDFALALKNGAKVVVVDPRFSTAAAKAHRWLPI  252 (765)
T ss_dssp             GGGCSEEEEESCCBTTBCCHHHHHHHHHHHHTTCEEEEECSBCCTTGGGCSEEECC
T ss_pred             cccCCEEEEEeCChhhcCChHHHHHHHHHHHCCCEEEEECCCCCcchhhCCeEeCC
Confidence            56899999999865442 2  22233457789999999999999888888988754

>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*

Probab=82.14  E-value=1.5  Score=42.43  Aligned_cols=67  Identities=10%  Similarity=0.167  Sum_probs=46.6

Q ss_pred             HHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCCccEEEECcHHHHHHHHHHHcc
Q 024533          105 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       105 a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~g~~~evl~~L~~~L~  175 (266)
                      +.+.+.+||++|++|+.+.-.....+.  ....+.++|.|+.++...++  ......++.++|..|.+.+.
T Consensus       270 ~~~~l~~aDlvl~iG~~~~~~~~~~~~--~~~~~~~~i~id~d~~~~~~--~~~~~~~~~~~l~~L~~~l~  336 (568)
T 2wvg_A          270 VEKTMKEADAVIALAPVFNDYSTTGWT--DIPDPKKLVLAEPRSVVVNG--IRFPSVHLKDYLTRLAQKVS  336 (568)
T ss_dssp             HHHHHHHCSEEEEESCCCBTTTTTTTT--CCCCTTTEEEECSSEEEETT--EEEESCCHHHHHHHHHHHCC
T ss_pred             HHHHHHhCCEEEEECCCcccccccccc--cCCCCCcEEEEeCChhhcCC--eecCCCCHHHHHHHHHHhcc
Confidence            455678899999999987644433331  11246789999998876653  34555568899999888764

>1d4o_A NADP(H) transhydrogenase; nucleotide-binding fold, protein-NADP(H) complex, inverted binding of NADP(H), oxidoreductase; HET: NAP; 1.21A {Bos taurus} SCOP: c.31.1.4

Probab=82.00  E-value=2.2  Score=35.70  Aligned_cols=87  Identities=17%  Similarity=0.281  Sum_probs=59.8

Q ss_pred             ccEEEcCCCCChh---chhHHHHHhhcCCEEEEEccCCChhhccc---------chH-HHhcCCCEEEEECCCCCC-C--
Q 024533           88 DTVLDWEDALPPV---EMNPAEENCRMADVVLCLGTSLQITPACN---------LPL-KSLRGGGKIVIVNLQQTP-K--  151 (266)
Q Consensus        88 P~Vv~FgE~lp~~---~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~---------L~~-~a~~~g~~lViIN~~~t~-~--  151 (266)
                      -+|++=+-.+|.+   +++.....+.+.|+.||+|..=.|.|++.         ||- .+-+ -..+|++++.-.. +  
T Consensus        71 MNVLLAEA~VPYd~v~EMdeIN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvl~v~k-Ak~ViV~KRsm~~GyAg  149 (184)
T 1d4o_A           71 LNVLLAEAGVPYDIVLEMDEINHDFPDTDLVLVIGANDTVNSAAQEDPNSIIAGMPVLEVWK-SKQVIVMKRSLGVGYAA  149 (184)
T ss_dssp             HHHHHHHHTCCGGGEEEHHHHGGGGGGCSEEEEESCSGGGCTHHHHCTTSTTTTCCCCCGGG-SSCEEEEESSSCCCTTC
T ss_pred             ceEEEEEecCCHHHHHhHHHHhhhhhhcCEEEEecCCccCCCccccCCCCCccCCeeeehhh-CCEEEEEECCCCCCcCC
Confidence            3666666667765   36667778899999999999999977763         331 1212 2246666665433 1  


Q ss_pred             -C-----CCccEEEECcHHHHHHHHHHHcc
Q 024533          152 -D-----KKASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       152 -d-----~~adl~I~g~~~evl~~L~~~L~  175 (266)
                       +     +..+..+.||+.+.+.+|.+.+.
T Consensus       150 v~NpLF~~~nt~MlfGDAK~~~~~l~~~l~  179 (184)
T 1d4o_A          150 VDNPIFYKPNTAMLLGDAKKTCDALQAKVR  179 (184)
T ss_dssp             CCCGGGGSTTEEEEESCHHHHHHHHHHHHH
T ss_pred             CcCcceecCCceEEeccHHHHHHHHHHHHH
Confidence             1     34567899999999999988874

>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9

Probab=80.83  E-value=1.7  Score=41.61  Aligned_cols=67  Identities=19%  Similarity=0.262  Sum_probs=46.3

Q ss_pred             HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCCccEEEECcHHHHHHHHHHHcc
Q 024533          104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~g~~~evl~~L~~~L~  175 (266)
                      .+.+.+.+||++|++|+.+...+...+..  ...+.++|.|+.++...++  ......++.++++.|.+ ++
T Consensus       269 ~~~~~l~~aD~vl~iG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~--~~~~~~~~~~~l~~L~~-l~  335 (552)
T 1ovm_A          269 AVKEAIEGADTVLCVGTRFTDTLTAGFTH--QLTPAQTIEVQPHAARVGD--VWFTGIPMNQAIETLVE-LC  335 (552)
T ss_dssp             HHHHHHHTSSEEEEESCCCCTTTTTTTCC--CCCTTTEEEECSSEEEETT--EEEESCCHHHHHHHHHH-HH
T ss_pred             HHHHHHHhCCEEEEECCCCCccccccccc--CCCCCeEEEEeCChheeCC--cccCCccHHHHHHHHHh-Cc
Confidence            45667889999999999987655544321  1235678999998876554  23344566888888877 54

>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}

Probab=80.39  E-value=1.1  Score=32.98  Aligned_cols=56  Identities=23%  Similarity=0.389  Sum_probs=37.8

Q ss_pred             cceeecCCCCcccchhhHHHHhhc------------------cCCCCCCCCCCCCCcccccEEEcCCCCChhchhHHHHH
Q 024533           47 SFREICPSCGVEYMRDFEIETIGM------------------KKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEEN  108 (266)
Q Consensus        47 l~~~~C~~C~~~~~~~~~~~~~~~------------------~~~~p~Cp~~~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~  108 (266)
                      -+...|+-||....+...++++-.                  .+-.-+||  .||..      |||-.+|.+.-++..+.
T Consensus         6 ~~~~~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP--~CgEE------FyG~~Lp~~EaeKVFEL   77 (95)
T 2k5c_A            6 HHMAKCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCP--VCGEE------FYGKTLPRREAEKVFEL   77 (95)
T ss_dssp             --CEECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECT--TTCCE------EETTSSCTTTHHHHHHH
T ss_pred             cccccCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCC--CccHH------HhcccCChHHHHHHHHH
Confidence            345789999998877665554311                  11235798  89975      78999998776666665


Q ss_pred             hh
Q 024533          109 CR  110 (266)
Q Consensus       109 ~~  110 (266)
                      +.
T Consensus        78 LN   79 (95)
T 2k5c_A           78 LN   79 (95)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family, iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter acetylenicus}

Probab=80.05  E-value=1  Score=44.81  Aligned_cols=53  Identities=17%  Similarity=0.235  Sum_probs=39.4

Q ss_pred             HhhcCCEEEEEccCCChh-h--cccchHHHhcCCCEEEEECCCCCCCCCCccEEEE
Q 024533          108 NCRMADVVLCLGTSLQIT-P--ACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH  160 (266)
Q Consensus       108 ~~~~aDLlLvlGTSL~V~-P--a~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~  160 (266)
                      .+.+||++|++|+-.... |  .......|+++|+++|.|++..+.....+|.+|.
T Consensus       157 d~~~ad~il~~G~n~~~~~p~~~~~~l~~a~~~G~klividPr~t~ta~~Ad~~l~  212 (727)
T 2e7z_A          157 SFADSNCLLFIGKNLSNHNWVSQFNDLKAALKRGCKLIVLDPRRTKVAEMADIWLP  212 (727)
T ss_dssp             CTTTCSEEEEESCCCBTTBSHHHHHHHHHHHHHTCEEEEECSSCCHHHHHCSEEEC
T ss_pred             CcccCCEEEEECCChhhcCCHHHHHHHHHHHHCCCeEEEECCCCCcchhhcceeec
Confidence            367899999999976542 2  2223345677899999999998876667788874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	266
d1yc5a1	245	c.31.1.5 (A:1-245) NAD-dependent deacetylase NpdA	7e-33
d2b4ya1	267	c.31.1.5 (A:36-302) NAD-dependent deacetylase sirt	4e-32
d1m2ka_	249	c.31.1.5 (A:) AF1676, Sir2 homolog (Sir2-AF1?) {Ar	7e-32
d1ma3a_	252	c.31.1.5 (A:) AF0112, Sir2 homolog (Sir2-AF2) {Arc	2e-29
d1j8fa_	323	c.31.1.5 (A:) Sirt2 histone deacetylase {Human (Ho	3e-28
d1s5pa_	235	c.31.1.5 (A:) NAD-dependent deacetylase CobB {Esch	1e-27
d1q1aa_	289	c.31.1.5 (A:) Hst2 {Baker's yeast (Saccharomyces c	2e-27

>d1yc5a1 c.31.1.5 (A:1-245) NAD-dependent deacetylase NpdA {Thermotoga maritima [TaxId: 2336]} Length = 245

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Sir2 family of transcriptional regulators
domain: NAD-dependent deacetylase NpdA
species: Thermotoga maritima [TaxId: 2336]

 Score =  118 bits (296), Expect = 7e-33
 Identities = 57/176 (32%), Positives = 94/176 (53%), Gaps = 5/176 (2%)

Query: 1   MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYM 60
            P++ H+ L +LE+ G+++ VI+QN+D LH R+G  +  + ELHGN     C  C  +Y 
Sbjct: 75  KPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKK--VIELHGNVEEYYCVRCEKKYT 132

Query: 61  RDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGT 120
            +  I+ +     P       C S ++  ++ + + LP   +  A      A +++ LG+
Sbjct: 133 VEDVIKKLESSDVPLCD---DCNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGS 189

Query: 121 SLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLNL 176
           SL + PA  LPL ++R GGK+VIVNL +TP D  A+L  +  V +    VM    +
Sbjct: 190 SLVVYPAAELPLITVRSGGKLVIVNLGETPFDDIATLKYNMDVVEFARRVMEEGGI 245

>d2b4ya1 c.31.1.5 (A:36-302) NAD-dependent deacetylase sirtuin-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 267

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Sir2 family of transcriptional regulators
domain: NAD-dependent deacetylase sirtuin-5
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (293), Expect = 4e-32
 Identities = 42/187 (22%), Positives = 67/187 (35%), Gaps = 22/187 (11%)

Query: 1   MPSITHMALVELEK----AGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCG 56
            P+  H A+ E E      G    VI+QN+D LH ++G     L E+HG+ F+  C SCG
Sbjct: 78  EPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTKN--LLEIHGSLFKTRCTSCG 135

Query: 57  VEYMRDFEIETIGMKKTPRRCSDVK----------------CGSRLKDTVLDWEDALPPV 100
           V            +          +                CG  L+  V+ + + L P 
Sbjct: 136 VVAENYKSPICPALSGKGAPEPGTQDASIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPA 195

Query: 101 EMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH 160
            +   +      D+ L +GTS  + PA     +    G  +   N + TP   +      
Sbjct: 196 ILEEVDRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNTETTPATNRFRFHFQ 255

Query: 161 APVDKVI 167
            P    +
Sbjct: 256 GPCGTTL 262

>d1m2ka_ c.31.1.5 (A:) AF1676, Sir2 homolog (Sir2-AF1?) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 249

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Sir2 family of transcriptional regulators
domain: AF1676, Sir2 homolog (Sir2-AF1?)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score =  115 bits (289), Expect = 7e-32
 Identities = 55/173 (31%), Positives = 86/173 (49%), Gaps = 8/173 (4%)

Query: 2   PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
           P+  H A  ELE+ G+LK +I+QNVD LH R+G     +  LHG+     C SC   +  
Sbjct: 76  PNKAHQAFAELERLGVLKCLITQNVDDLHERAGSRN--VIHLHGSLRVVRCTSCNNSFEV 133

Query: 62  DFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTS 121
           +   +         +C    CGS L+  V+   + LPP  ++ A      ADV++  GTS
Sbjct: 134 ESAPK----IPPLPKCDK--CGSLLRPGVVWAGEMLPPDVLDRAMREVERADVIIVAGTS 187

Query: 122 LQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHL 174
             + PA +LPL   + GG I+ +N  +TP    A   +     +V+  ++RH+
Sbjct: 188 AVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELVRHV 240

>d1ma3a_ c.31.1.5 (A:) AF0112, Sir2 homolog (Sir2-AF2) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 252

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Sir2 family of transcriptional regulators
domain: AF0112, Sir2 homolog (Sir2-AF2)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score =  109 bits (272), Expect = 2e-29
 Identities = 51/173 (29%), Positives = 85/173 (49%), Gaps = 4/173 (2%)

Query: 2   PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
           P+  H A+ ELE+ GI+K VI+QN+D LH R+G  R  + ELHG+  +  C  C   Y  
Sbjct: 78  PNPAHYAIAELERMGIVKAVITQNIDMLHQRAGSRR--VLELHGSMDKLDCLDCHETYDW 135

Query: 62  DFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTS 121
              +E     + PR          +K  V+ + + LP   +  A E  +  D  + +G+S
Sbjct: 136 SEFVEDFNKGEIPRCRKC--GSYYVKPRVVLFGEPLPQRTLFEAIEEAKHCDAFMVVGSS 193

Query: 122 LQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHL 174
           L + PA  LP  + + G K++IVN + T  D    + +     +V+  ++  +
Sbjct: 194 LVVYPAAELPYIAKKAGAKMIIVNAEPTMADPIFDVKIIGKAGEVLPKIVEEV 246

>d1j8fa_ c.31.1.5 (A:) Sirt2 histone deacetylase {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Sir2 family of transcriptional regulators
domain: Sirt2 histone deacetylase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (269), Expect = 3e-28
 Identities = 41/163 (25%), Positives = 78/163 (47%), Gaps = 5/163 (3%)

Query: 2   PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSF--REICPSCGVEY 59
           P+I H  +  L+  G+L    +QN+D+L   +G+ +E L E HG  +    +  SC  EY
Sbjct: 112 PTICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLEQEDLVEAHGTFYTSHCVSASCRHEY 171

Query: 60  MRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLG 119
              +  E I  + TP+      C S +K  ++ + ++LP    +  + +    D++L +G
Sbjct: 172 PLSWMKEKIFSEVTPKCE---DCQSLVKPDIVFFGESLPARFFSCMQSDFLKVDLLLVMG 228

Query: 120 TSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAP 162
           TSLQ+ P  +L  K+     +++I   +    D    +++   
Sbjct: 229 TSLQVQPFASLISKAPLSTPRLLINKEKAGQSDPFLGMIMGLG 271

>d1s5pa_ c.31.1.5 (A:) NAD-dependent deacetylase CobB {Escherichia coli [TaxId: 562]} Length = 235

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Sir2 family of transcriptional regulators
domain: NAD-dependent deacetylase CobB
species: Escherichia coli [TaxId: 562]

 Score =  104 bits (259), Expect = 1e-27
 Identities = 38/175 (21%), Positives = 75/175 (42%), Gaps = 11/175 (6%)

Query: 1   MPSITHMALVELEK-AGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEY 59
            P+  H+AL +L+   G    +++QN+D+LH R+G     +  +HG   +  C   G   
Sbjct: 66  QPNAAHLALAKLQDALGDRFLLVTQNIDNLHERAGNTN--VIHMHGELLKVRCSQSGQVL 123

Query: 60  MRDFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLG 119
                    G      +C   +  + L+  V+ + +   P+ M+       MAD+ + +G
Sbjct: 124 DWT------GDVTPEDKCHCCQFPAPLRPHVVWFGE--MPLGMDEIYMALSMADIFIAIG 175

Query: 120 TSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHL 174
           TS  + PA     ++   G   V +NL+ +    + +   + P  +V+   +  L
Sbjct: 176 TSGHVYPAAGFVHEAKLHGAHTVELNLEPSQVGNEFAEKYYGPASQVVPEFVEKL 230

>d1q1aa_ c.31.1.5 (A:) Hst2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 289

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Sir2 family of transcriptional regulators
domain: Hst2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  104 bits (261), Expect = 2e-27
 Identities = 42/190 (22%), Positives = 73/190 (38%), Gaps = 18/190 (9%)

Query: 2   PSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMR 61
           PS  H  L   +   +LK V +QN+D+L  ++G+  + + E HG+     C  CG  Y  
Sbjct: 89  PSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPP 148

Query: 62  DFEIETIGMKKTPRRCSDVKCGSRLKDTVLDWEDALPP-------------VEMNPAEEN 108
                 +             CG  +K  ++ + + LP               E       
Sbjct: 149 QVFKSKLAEHPIKDFVKCDVCGELVKPAIVFFGEDLPDSFSETWLNDSEWLREKITTSGK 208

Query: 109 CRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTP----KDKKASLVVHAPVD 164
                +V+ +GTSL + P  +LP + +    K V+ NL+         +   L+VH   D
Sbjct: 209 HPQQPLVIVVGTSLAVYPFASLP-EEIPRKVKRVLCNLETVGDFKANKRPTDLIVHQYSD 267

Query: 165 KVIAGVMRHL 174
           +    ++  L
Sbjct: 268 EFAEQLVEEL 277

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	266
d1yc5a1	245	NAD-dependent deacetylase NpdA {Thermotoga maritim	100.0
d1m2ka_	249	AF1676, Sir2 homolog (Sir2-AF1?) {Archaeon Archaeo	100.0
d1q1aa_	289	Hst2 {Baker's yeast (Saccharomyces cerevisiae) [Ta	100.0
d1s5pa_	235	NAD-dependent deacetylase CobB {Escherichia coli [	100.0
d2b4ya1	267	NAD-dependent deacetylase sirtuin-5 {Human (Homo s	100.0
d1j8fa_	323	Sirt2 histone deacetylase {Human (Homo sapiens) [T	100.0
d1ma3a_	252	AF0112, Sir2 homolog (Sir2-AF2) {Archaeon Archaeog	100.0
d2ji7a1	175	Oxalyl-CoA decarboxylase {Oxalobacter formigenes [	97.71
d1ybha1	179	Acetohydroxyacid synthase catalytic subunit {Thale	97.33
d2djia1	177	Pyruvate oxidase {Aerococcus viridans [TaxId: 1377	97.24
d2ez9a1	183	Pyruvate oxidase {Lactobacillus plantarum [TaxId:	97.22
d2ihta1	177	Carboxyethylarginine synthase {Streptomyces clavul	97.19
d1t9ba1	171	Acetohydroxyacid synthase catalytic subunit {Baker	97.12
d1ozha1	179	Catabolic acetolactate synthase {Klebsiella pneumo	97.08
d1q6za1	160	Benzoylformate decarboxylase {Pseudomonas putida [	96.37
d1efva2	124	C-terminal domain of the electron transfer flavopr	95.34
d1ovma1	161	Indole-3-pyruvate decarboxylase {Enterobacter cloa	94.85
d3clsd2	123	C-terminal domain of the electron transfer flavopr	94.77
d1zpda1	175	Pyruvate decarboxylase {Zymomonas mobilis [TaxId:	94.52
d1pvda1	179	Pyruvate decarboxylase {Baker's yeast (Saccharomyc	93.99
d1pnoa_	180	Transhydrogenase domain III (dIII) {Rhodospirillum	91.44
d1ytla1	158	Acetyl-CoA decarbonylase/synthase complex epsilon	89.46
d1d4oa_	177	Transhydrogenase domain III (dIII) {Cow (Bos tauru	86.54
d2iv2x2	564	Formate dehydrogenase H {Escherichia coli [TaxId:	82.48

>d1yc5a1 c.31.1.5 (A:1-245) NAD-dependent deacetylase NpdA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Sir2 family of transcriptional regulators
domain: NAD-dependent deacetylase NpdA
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=6.3e-50  Score=355.75  Aligned_cols=171  Identities=34%  Similarity=0.566  Sum_probs=161.0

Q ss_pred             CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCCCC
Q 024533            1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDV   80 (266)
Q Consensus         1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~   80 (266)
                      +||++|++|++|+++|++.+||||||||||+|||+  ++|+|+|||++..+|..|++.|..+.....+. ....|.|+  
T Consensus        75 ~P~~~H~~L~~l~~~~~~~~viTQNiDgLh~~AG~--~~v~elHG~l~~~~C~~c~~~~~~~~~~~~~~-~~~~p~c~--  149 (245)
T d1yc5a1          75 KPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGS--KKVIELHGNVEEYYCVRCEKKYTVEDVIKKLE-SSDVPLCD--  149 (245)
T ss_dssp             CCCHHHHHHHHHHHTTSCSEEEECCCSCHHHHTTC--SCEEETTEEEEEEEETTTCCEEEHHHHHHHTT-TCSSCBCT--
T ss_pred             hhhhhhHHHHHHHhcCCCceEeecccchHHHHcCC--ccccccccccceeeecccCCCccHHHHhhhhh-cccCCCcc--
Confidence            69999999999999999999999999999999998  58999999999999999999998877665543 34578898  


Q ss_pred             CCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCCccEEEE
Q 024533           81 KCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH  160 (266)
Q Consensus        81 ~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~  160 (266)
                      .|||.+||+||||||.+|++.+.++.+++++||++|||||||+|+|+++|+..++++|+++|+||+++|+.|..+|+.|+
T Consensus       150 ~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~~DlllviGTSl~V~p~~~l~~~a~~~g~~~i~IN~~~t~~d~~~d~~i~  229 (245)
T d1yc5a1         150 DCNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGETPFDDIATLKYN  229 (245)
T ss_dssp             TTCCBEEEEECCBTSBCCHHHHHHHHHHHHHCSEEEEESCCSCEETGGGHHHHHHHHTCEEEEECSSCCTTGGGCSEEEC
T ss_pred             ccCCcccCcEEEccccCCHHHHHHHHHHhhcCCEEEEECCCeEEechhhhhHHHHHcCCeEEEECCCCCCCCcceeEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHHHccc
Q 024533          161 APVDKVIAGVMRHLNL  176 (266)
Q Consensus       161 g~~~evl~~L~~~L~~  176 (266)
                      |+++++|++|++.||+
T Consensus       230 g~~~e~l~~l~~~lgi  245 (245)
T d1yc5a1         230 MDVVEFARRVMEEGGI  245 (245)
T ss_dssp             SCHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHcCC
Confidence            9999999999999985

>d1m2ka_ c.31.1.5 (A:) AF1676, Sir2 homolog (Sir2-AF1?) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Sir2 family of transcriptional regulators
domain: AF1676, Sir2 homolog (Sir2-AF1?)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=5.5e-48  Score=343.64  Aligned_cols=170  Identities=33%  Similarity=0.526  Sum_probs=156.7

Q ss_pred             CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCCCC
Q 024533            1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDV   80 (266)
Q Consensus         1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~   80 (266)
                      +||.+|++|++|+++|++.+||||||||||+|||+  ++|+|+|||+++.+|..|++.|..+...    ..+..|+|+  
T Consensus        75 ~P~~~H~~L~~L~~~g~~~~iiTqNiDgL~~~aG~--~~v~elHG~l~~~~C~~c~~~~~~~~~~----~~~~~p~C~--  146 (249)
T d1m2ka_          75 QPNKAHQAFAELERLGVLKCLITQNVDDLHERAGS--RNVIHLHGSLRVVRCTSCNNSFEVESAP----KIPPLPKCD--  146 (249)
T ss_dssp             CCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTC--CSEEETTEEEEEEEESSSSCEEECSSCC----CSSSCCBCS--
T ss_pred             CCcchhHHHHHHHHcCCceEEEeeeeCCHHHhcCC--ceEEEeccchhheeeccCCCcccccccc----cCCCCCCcc--
Confidence            69999999999999999999999999999999997  6899999999999999999988755321    234679998  


Q ss_pred             CCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCCccEEEE
Q 024533           81 KCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH  160 (266)
Q Consensus        81 ~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~  160 (266)
                      .|||.+||+||||||.+|++.++.+.+++++||++||+|||++|+|+++++..|+++|+++|+||+++++.|..+++.|+
T Consensus       147 ~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~~DlllviGTSl~V~pa~~l~~~a~~~g~~~i~IN~~~t~~d~~~d~~i~  226 (249)
T d1m2ka_         147 KCGSLLRPGVVWAGEMLPPDVLDRAMREVERADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLR  226 (249)
T ss_dssp             SSSSBEEEEECCTTSCCCHHHHHHHHHHHHHCSEEEEESCCSCSTTGGGHHHHHHHTTCEEEEECSSCCTTGGGCSEEEC
T ss_pred             cCCCEeccceeeccccCchHHHHHHHHhcccCCEEEEECCCCeeeehhhHHHHHHHcCCeEEEECCCCCCCCCcccEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHH----HHcccCC
Q 024533          161 APVDKVIAGVM----RHLNLWI  178 (266)
Q Consensus       161 g~~~evl~~L~----~~L~~~i  178 (266)
                      |+++++|++|+    +.|||+|
T Consensus       227 g~a~e~L~~l~~~l~~~l~~~~  248 (249)
T d1m2ka_         227 GKAGEVMDELVRHVRKALSLKL  248 (249)
T ss_dssp             SCHHHHHHHHHHHHHHHHHTCC
T ss_pred             CCHHHHHHHHHHHHHHHhCCcc
Confidence            99999998876    4567765

>d1q1aa_ c.31.1.5 (A:) Hst2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Sir2 family of transcriptional regulators
domain: Hst2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.6e-48  Score=349.39  Aligned_cols=173  Identities=25%  Similarity=0.387  Sum_probs=153.6

Q ss_pred             CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhhcc--CCCCCCC
Q 024533            1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMK--KTPRRCS   78 (266)
Q Consensus         1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~--~~~p~Cp   78 (266)
                      +||++|++|+.|+++|++.+||||||||||++||+++++|+|+|||++..+|.+|++.|+.+.....+...  ...|+|+
T Consensus        88 ~Pn~~H~~L~~L~~~g~~~~viTQNIDgLh~~AG~~~~~v~elHGs~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~p~c~  167 (289)
T d1q1aa_          88 RPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCD  167 (289)
T ss_dssp             CCCHHHHHHHHHHHTTCEEEEEECCSSCHHHHTTCCGGGEEETTEEEEEEEETTTCCEECHHHHHHHHTCSSCCSCCBCT
T ss_pred             CCchhHHHHHHHHhcCCceEEEeeccCCchhccCCcccchhhccccceeeeecCCCccCCHHHHHHHhhhccccccCccc
Confidence            59999999999999999999999999999999999888999999999999999999999877555444333  2357787


Q ss_pred             CCCCCCcccccEEEcCCCCChhchhHHHHHh-------------hcCCEEEEEccCCChhhcccchHHHhcCCCEEEEEC
Q 024533           79 DVKCGSRLKDTVLDWEDALPPVEMNPAEENC-------------RMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVN  145 (266)
Q Consensus        79 ~~~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~-------------~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN  145 (266)
                        .|||.+||+||||||++|+..++.+.++.             .+||++|||||||+|+||++|+..+. +++++|+||
T Consensus       168 --~Cgg~lrP~vv~FGE~lp~~~~~~~~~~~e~~~~~~~~~~~~~~aDlllviGTSl~V~Pa~~l~~~a~-~~~~~viIN  244 (289)
T d1q1aa_         168 --VCGELVKPAIVFFGEDLPDSFSETWLNDSEWLREKITTSGKHPQQPLVIVVGTSLAVYPFASLPEEIP-RKVKRVLCN  244 (289)
T ss_dssp             --TTCCBEEEEECCBTSBCCHHHHHHHHHHHHHHHHHHHC----CCCCEEEEESCCCCEETTTHHHHHSC-TTSEEEEES
T ss_pred             --cccccccCceeeccccCChHHHHHHHHHHHHHHHHHHHHhhcccCCEEEEECCCceecCHHHHHHHHH-cCCCEEEEe
Confidence              89999999999999999988777765543             48999999999999999999998764 567899999


Q ss_pred             CCCCC----CCCCccEEEECcHHHHHHHHHHHccc
Q 024533          146 LQQTP----KDKKASLVVHAPVDKVIAGVMRHLNL  176 (266)
Q Consensus       146 ~~~t~----~d~~adl~I~g~~~evl~~L~~~L~~  176 (266)
                      ++++.    .+..+|++|+|+++++|++|+++|||
T Consensus       245 ~e~~~~~~~~~~~~Dl~I~g~~~~vl~~L~~~LGw  279 (289)
T d1q1aa_         245 LETVGDFKANKRPTDLIVHQYSDEFAEQLVEELGW  279 (289)
T ss_dssp             SSCCTHHHHSCCTTCEEECCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCcccccCCcCEEEeCCHHHHHHHHHHHcCC
Confidence            99886    67888999999999999999999998

>d1s5pa_ c.31.1.5 (A:) NAD-dependent deacetylase CobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Sir2 family of transcriptional regulators
domain: NAD-dependent deacetylase CobB
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.1e-48  Score=342.32  Aligned_cols=164  Identities=23%  Similarity=0.367  Sum_probs=141.1

Q ss_pred             CCCHHHHHHHHHHHc-CCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCCC
Q 024533            1 MPSITHMALVELEKA-GILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSD   79 (266)
Q Consensus         1 ~Pn~~H~aLa~L~~~-g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~   79 (266)
                      +||++|++|++|+++ |++.++|||||||||+|||+  ++|+|||||++..+|..|++.++.....    .....|.|+ 
T Consensus        66 ~Pn~~H~~l~~l~~~~g~~~~viTQNIDgLh~~AG~--~~v~ElHGsl~~~~C~~C~~~~~~~~~~----~~~~~~~c~-  138 (235)
T d1s5pa_          66 QPNAAHLALAKLQDALGDRFLLVTQNIDNLHERAGN--TNVIHMHGELLKVRCSQSGQVLDWTGDV----TPEDKCHCC-  138 (235)
T ss_dssp             CCCHHHHHHHHHHHHHGGGEEEEESCCSSHHHHHTC--CSCEETTEEEEEEEETTTCCEEECCSCC----CSSCCC----
T ss_pred             CCcHHHHHHHHHHHHhccceeEeeccchHHHHhcCC--chhhhhhCcccEEEECCCCCcccccccc----ccccccccc-
Confidence            599999999999986 99999999999999999997  6899999999999999999988654322    123457787 


Q ss_pred             CCCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCCccEEE
Q 024533           80 VKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVV  159 (266)
Q Consensus        80 ~~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I  159 (266)
                       .|||.+||+||||||.+|.  ++++.+++++||++|||||||+|+|+++|+..|.++|+++|+||+++++.|..+++.|
T Consensus       139 -~Cgg~lrP~VV~FGE~~~~--~~~~~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~iiiIN~~~t~~~~~~~~~i  215 (235)
T d1s5pa_         139 -QFPAPLRPHVVWFGEMPLG--MDEIYMALSMADIFIAIGTSGHVYPAAGFVHEAKLHGAHTVELNLEPSQVGNEFAEKY  215 (235)
T ss_dssp             -----CEEEEECCTTSCCSS--HHHHHHHHHHCSEEEEESCCTTEETGGGHHHHHHHTTCEEEEEESSSCC---CCSEEE
T ss_pred             -ccccccccceeecCCCChh--HHHHHHHHHhCCEEEEEccCCcccCHHHHHHHHHHcCCeEEEECCCCCCCCCcccEEE
Confidence             8999999999999999875  5788899999999999999999999999999999999999999999999999999999


Q ss_pred             ECcHHHHHHHHHHHc
Q 024533          160 HAPVDKVIAGVMRHL  174 (266)
Q Consensus       160 ~g~~~evl~~L~~~L  174 (266)
                      +|+++++|++|+++|
T Consensus       216 ~g~a~e~l~~l~~~l  230 (235)
T d1s5pa_         216 YGPASQVVPEFVEKL  230 (235)
T ss_dssp             ESCHHHHHHHHHHHH
T ss_pred             eCCHHHHHHHHHHHH
Confidence            999999999999987

>d2b4ya1 c.31.1.5 (A:36-302) NAD-dependent deacetylase sirtuin-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Sir2 family of transcriptional regulators
domain: NAD-dependent deacetylase sirtuin-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-47  Score=341.47  Aligned_cols=169  Identities=26%  Similarity=0.453  Sum_probs=149.9

Q ss_pred             CCCHHHHHHHHHHH----cCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhH--HHHhh-----
Q 024533            1 MPSITHMALVELEK----AGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFE--IETIG-----   69 (266)
Q Consensus         1 ~Pn~~H~aLa~L~~----~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~--~~~~~-----   69 (266)
                      +||.+|++|++|++    +|++.+||||||||||++||.  ++|+|+|||++..+|..|++.+.....  .....     
T Consensus        78 ~P~~~h~~l~~l~~~~~~~g~~~~viTQNIDgLh~~aG~--~~vielHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~  155 (267)
T d2b4ya1          78 EPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGT--KNLLEIHGSLFKTRCTSCGVVAENYKSPICPALSGKGAP  155 (267)
T ss_dssp             CCCHHHHHHHHHHHHHHTTTCEEEEEECCSSCHHHHHTC--CSEEETTEEEEEEEETTTCCEEECCCSSSSGGGTTCCCC
T ss_pred             CcchHHHHHHHHHHHHhhcCceeEEEecchHHHHHhCCC--CceEEEeccccEEEECCCCCcccccccccchhhhccCCC
Confidence            59999999999984    599999999999999999997  689999999999999999987642110  00000     


Q ss_pred             ---------ccCCCCCCCCCCCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCE
Q 024533           70 ---------MKKTPRRCSDVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGK  140 (266)
Q Consensus        70 ---------~~~~~p~Cp~~~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~  140 (266)
                               ..+..|+|+++.|||.|||+||||||.+|++.++++.+++++||++|||||||+|+|+++|+..|+++|++
T Consensus       156 ~~~~~~~~~~~~~~p~C~~~~Cgg~lrP~VV~FgE~~p~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~  235 (267)
T d2b4ya1         156 EPGTQDASIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVP  235 (267)
T ss_dssp             STTCCCCCCCGGGSCBCCSTTTCCBEEEEECCTTCCCCHHHHHHHHHHHHHCSEEEEESCCSCSTTGGGHHHHHHHTTCC
T ss_pred             CcchhhhhcchhhcccccccCCCCEecCcEEEcCCcCCHHHHHHHHHhhhhCCeEEEECCCCeecCHHHHHHHHHHcCCc
Confidence                     11246899866799999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCCCCCCCCCccEEEECcHHHHHHHHH
Q 024533          141 IVIVNLQQTPKDKKASLVVHAPVDKVIAGVM  171 (266)
Q Consensus       141 lViIN~~~t~~d~~adl~I~g~~~evl~~L~  171 (266)
                      +|+||+++++.|..+|++|+|+|+++|++|+
T Consensus       236 vv~IN~~~t~~d~~~d~~i~g~~~~vL~~l~  266 (267)
T d2b4ya1         236 VAEFNTETTPATNRFRFHFQGPCGTTLPEAL  266 (267)
T ss_dssp             EEEEESSCCTTGGGSSEEEESCHHHHHHHHT
T ss_pred             EEEEeCCCCCCCCccCEEEeCCHHHHHHHHh
Confidence            9999999999999999999999999999885

>d1j8fa_ c.31.1.5 (A:) Sirt2 histone deacetylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Sir2 family of transcriptional regulators
domain: Sirt2 histone deacetylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.9e-47  Score=347.85  Aligned_cols=172  Identities=24%  Similarity=0.388  Sum_probs=151.0

Q ss_pred             CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCc--ccchhhHHHHhhccCCCCCCC
Q 024533            1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGV--EYMRDFEIETIGMKKTPRRCS   78 (266)
Q Consensus         1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~--~~~~~~~~~~~~~~~~~p~Cp   78 (266)
                      +||++|++|+.|+++|++.++|||||||||++||++.++|+|+|||+++.+|..|+.  .|+.++..+.+ .....|+|+
T Consensus       111 ~Pn~~H~~l~~L~~~g~l~~viTQNIDgLh~~AG~~~~~viElHGsl~~~~C~~c~~~~~~~~~~~~~~~-~~~~~p~C~  189 (323)
T d1j8fa_         111 KPTICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLEQEDLVEAHGTFYTSHCVSASCRHEYPLSWMKEKI-FSEVTPKCE  189 (323)
T ss_dssp             CCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCGGGEEETTEEEEEEEESCTTTCCEECHHHHHHHH-HTTCCCBCT
T ss_pred             CCCHHHHHHHHHHHcCCceEEEeccccchhhccCCchhhheeeccccccceecccccchhhhhhhhhhhh-ccccccccc
Confidence            699999999999999999999999999999999999999999999999999998775  44444333333 234678998


Q ss_pred             CCCCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCC-------
Q 024533           79 DVKCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPK-------  151 (266)
Q Consensus        79 ~~~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~-------  151 (266)
                        .|||.+||+||||||.+|++.++.+.+++.+||++|||||||+|+||++|+..|++++ +.|+||++++..       
T Consensus       190 --~CgG~lRP~VV~FGE~lP~~~~~~a~~~~~~aDllIViGTSL~V~Paa~l~~~a~~~~-~~v~IN~e~~~~~~~~~~~  266 (323)
T d1j8fa_         190 --DCQSLVKPDIVFFGESLPARFFSCMQSDFLKVDLLLVMGTSLQVQPFASLISKAPLST-PRLLINKEKAGQSDPFLGM  266 (323)
T ss_dssp             --TTCCBEEEEECCBTSCCCHHHHHHHHHGGGSCSEEEEESSCSCSHHHHHHHTTSCTTC-CEEEEESSCCCCCCHHHHH
T ss_pred             --cCCCccCCCEEEcCCCCcHHHHHHHHHHHhCCCEEEEECCCCeecCHHHHHHHHHcCC-CEEEEECCCCCCCCccchh
Confidence              9999999999999999999989999999999999999999999999999998776554 567799998753       


Q ss_pred             -------------CCCccEEEECcHHHHHHHHHHHccc
Q 024533          152 -------------DKKASLVVHAPVDKVIAGVMRHLNL  176 (266)
Q Consensus       152 -------------d~~adl~I~g~~~evl~~L~~~L~~  176 (266)
                                   +...|+.+.|+||+++..|++.|||
T Consensus       267 ~~~~~~~~~~~~~~~~~D~~~~gdcd~~~~~l~~~lgw  304 (323)
T d1j8fa_         267 IMGLGGGMDFDSKKAYRDVAWLGECDQGCLALAELLGW  304 (323)
T ss_dssp             HHHHHTCCCSSSTTCCSEEEEESCHHHHHHHHHHHTTC
T ss_pred             hccccccccccccCCcceEEEccCHHHHHHHHHHHcCC
Confidence                         2345999999999999999999998

>d1ma3a_ c.31.1.5 (A:) AF0112, Sir2 homolog (Sir2-AF2) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Sir2 family of transcriptional regulators
domain: AF0112, Sir2 homolog (Sir2-AF2)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=3.4e-45  Score=325.03  Aligned_cols=171  Identities=29%  Similarity=0.456  Sum_probs=158.8

Q ss_pred             CCCHHHHHHHHHHHcCCccEEEeccccchhhhcCCCCCceEEcCCCcceeecCCCCcccchhhHHHHhhccCCCCCCCCC
Q 024533            1 MPSITHMALVELEKAGILKFVISQNVDSLHLRSGIPREKLAELHGNSFREICPSCGVEYMRDFEIETIGMKKTPRRCSDV   80 (266)
Q Consensus         1 ~Pn~~H~aLa~L~~~g~l~~viTQNIDgLh~kAG~~~~~viElHGnl~~~~C~~C~~~~~~~~~~~~~~~~~~~p~Cp~~   80 (266)
                      +||.+|++|+.|++.|++.+||||||||||+|||+  ++|+|+|||++..+|..|.+.+..+............|.|+  
T Consensus        77 ~P~~~h~~l~~l~~~~~~~~viTqNiDgL~~kaG~--~~v~e~hG~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~c~--  152 (252)
T d1ma3a_          77 EPNPAHYAIAELERMGIVKAVITQNIDMLHQRAGS--RRVLELHGSMDKLDCLDCHETYDWSEFVEDFNKGEIPRCRK--  152 (252)
T ss_dssp             CCCHHHHHHHHHHHTTSEEEEEESCCSCHHHHHTC--CSEEETTEEEEEEEETTTCCEEEGGGTHHHHHTTCCCCCTT--
T ss_pred             CCCHHHHHHHHHhhcCCccEEEecchhHHHHhcCC--cchhhhcCCcceeEEcccccccccchhhhhhhcCCCCCCcc--
Confidence            59999999999999999999999999999999997  69999999999999999998877765555544556788998  


Q ss_pred             CCCCcccccEEEcCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCCccEEEE
Q 024533           81 KCGSRLKDTVLDWEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH  160 (266)
Q Consensus        81 ~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~  160 (266)
                      .|||.+||+||||||++|.+.+..+.+++++||++|+||||++|+|+++++..|+++|+++|+||+++++.|..+|+.|+
T Consensus       153 ~cgg~lrP~vv~fgE~~~~~~~~~~~~~~~~~dl~LviGTSl~V~p~~~~~~~a~~~~~~~i~IN~~~~~~d~~~d~~i~  232 (252)
T d1ma3a_         153 CGSYYVKPRVVLFGEPLPQRTLFEAIEEAKHCDAFMVVGSSLVVYPAAELPYIAKKAGAKMIIVNAEPTMADPIFDVKII  232 (252)
T ss_dssp             TCCSCEEEEECCBTSBCCHHHHHHHHHHHHHCSEEEEESCCSCEETGGGHHHHHHHHTCEEEEEESSCCTTGGGCSEEEE
T ss_pred             cccccCCCeEEECCCcCchHHHHHHHHHhhCCCeEEEecCCceeeechHHHHHHHHcCCeEEEECCCCCCCCCceeEEEE
Confidence            89999999999999999998899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHHHcc
Q 024533          161 APVDKVIAGVMRHLN  175 (266)
Q Consensus       161 g~~~evl~~L~~~L~  175 (266)
                      |+++++|++|++.|.
T Consensus       233 g~~~evl~~l~~~l~  247 (252)
T d1ma3a_         233 GKAGEVLPKIVEEVK  247 (252)
T ss_dssp             SCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999999998763

>d2ji7a1 c.31.1.3 (A:195-369) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Oxalyl-CoA decarboxylase
species: Oxalobacter formigenes [TaxId: 847]

Probab=97.71  E-value=7.1e-05  Score=60.42  Aligned_cols=83  Identities=14%  Similarity=0.096  Sum_probs=57.8

Q ss_pred             cCCCCChhchhHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHHH
Q 024533           93 WEDALPPVEMNPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGV  170 (266)
Q Consensus        93 FgE~lp~~~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~L  170 (266)
                      |.+..|...-......+.+|||+|+||+.+........+......++++|.||.++....  ...++.|.||+..+|..|
T Consensus        60 ~~~~h~~~~~~~~~~~l~~aDlii~vG~~~~~~~~~~~~~~~~~~~~kvI~Id~d~~~i~~~~~~~l~i~~D~~~~l~~L  139 (175)
T d2ji7a1          60 LPDNHPQSAAATRAFALAQCDVCVLIGARLNWLMQHGKGKTWGDELKKYVQIDIQANEMDSNQPIAAPVVGDIKSAVSLL  139 (175)
T ss_dssp             BCTTCTTBCGGGHHHHHHHCSEEEEESCCSSGGGGGGCSGGGTTSCCEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHH
T ss_pred             CCCcccccccccccceeecccceeeeeccCCcccccccccccCCccceEEEEeccchhhccccCcCceEEEcHHHHHHHH
Confidence            344444333333345688999999999998654433332222345678999999887654  456899999999999999


Q ss_pred             HHHcc
Q 024533          171 MRHLN  175 (266)
Q Consensus       171 ~~~L~  175 (266)
                      .+.|.
T Consensus       140 ~~~l~  144 (175)
T d2ji7a1         140 RKALK  144 (175)
T ss_dssp             HHHTT
T ss_pred             HHHhc
Confidence            98873

>d1ybha1 c.31.1.3 (A:281-459) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Acetohydroxyacid synthase catalytic subunit
species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]

Probab=97.33  E-value=0.00037  Score=56.26  Aligned_cols=70  Identities=19%  Similarity=0.282  Sum_probs=55.6

Q ss_pred             HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHHHHHHcc
Q 024533          104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~L~~~L~  175 (266)
                      .+...+.+|||+|++|+.+.-.......  ....++++|.||.++....  ...++.|.||+..+|.+|.+.|.
T Consensus        76 ~~~~~~~~aDlil~lG~~l~~~~~~~~~--~~~~~~kiI~Id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~  147 (179)
T d1ybha1          76 YANYAVEHSDLLLAFGVRFDDRVTGKLE--AFASRAKIVHIDIDSAEIGKNKTPHVSVCGDVKLALQGMNKVLE  147 (179)
T ss_dssp             HHHHHHHHCSEEEEESCCCCHHHHSSGG--GTTTTSEEEEEESCTTTTTSSSCCSEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhhhcccccccccccccc--ccCCCCeEEEEeCcccccccccCCCceEEeccHHHHHHHHHHHH
Confidence            4567788999999999999876554432  2356789999999988754  45689999999999999988763

>d2djia1 c.31.1.3 (A:187-363) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Pyruvate oxidase
species: Aerococcus viridans [TaxId: 1377]

Probab=97.24  E-value=0.00045  Score=55.57  Aligned_cols=69  Identities=16%  Similarity=0.316  Sum_probs=53.0

Q ss_pred             hHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHHHHHHcc
Q 024533          103 NPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       103 ~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~L~~~L~  175 (266)
                      ..+.+.+++|||+|+|||.+.......    .....+++|.||.++....  ...++.|.|++..+|.+|.+.+.
T Consensus        77 ~~~~~~l~~aDlvi~lG~~~~~~~~~~----~~~~~~kiI~Id~d~~~i~~~~~~d~~i~gD~~~~L~~L~~~l~  147 (177)
T d2djia1          77 KPANETILEADTVLFAGSNFPFSEVEG----TFRNVDNFIQIDIDPAMLGKRHHADVAILGDAALAIDEILNKVD  147 (177)
T ss_dssp             HHHHHHHHHCSEEEEESCCCTTTTTTT----TTTTCSEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHHSC
T ss_pred             hhhhhhhhccCceEEeeccCCCcccee----ccccccchheEEecccccCCcccCceEEEeCHHHHHHHHHHhhh
Confidence            345677899999999999885433222    1345679999999887654  45689999999999999999864

>d2ez9a1 c.31.1.3 (A:183-365) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Pyruvate oxidase
species: Lactobacillus plantarum [TaxId: 1590]

Probab=97.22  E-value=0.0004  Score=56.52  Aligned_cols=68  Identities=21%  Similarity=0.381  Sum_probs=53.6

Q ss_pred             HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHHHHHHcc
Q 024533          104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~L~~~L~  175 (266)
                      .+.+.+++||++|++|+.+........    ...++++|.||.++....  ...++.|.||+.++|.+|.+.|.
T Consensus        87 ~~~~~i~~aDlil~vG~~l~~~~~~~~----~~~~~~iI~Id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~  156 (183)
T d2ez9a1          87 PANEALAQADVVLFVGNNYPFAEVSKA----FKNTRYFLQIDIDPAKLGKRHKTDIAVLADAQKTLAAILAQVS  156 (183)
T ss_dssp             HHHHHHHHCSEEEEESCCCTTTTTTTT----TTTCSEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHTCC
T ss_pred             HHHhhhhccCceEEeecccCcccceee----cccccchheeeccHHHHhhcCCCCeEEEECHHHHHHHHHHHhh
Confidence            456678899999999999865443322    346789999999887654  45689999999999999999875

>d2ihta1 c.31.1.3 (A:198-374) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Carboxyethylarginine synthase
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=97.19  E-value=0.00052  Score=55.04  Aligned_cols=70  Identities=13%  Similarity=0.045  Sum_probs=53.8

Q ss_pred             HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCC--CccEEEECcHHHHHHHHHHHcc
Q 024533          104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDK--KASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~--~adl~I~g~~~evl~~L~~~L~  175 (266)
                      .+.+.+++||++|++|+.+........  .....++++|.||.++....+  ..++.|.|++..+|.+|.+.+.
T Consensus        83 ~~~~~l~~aDlvl~vG~~~~~~~~~~~--~~~~~~~k~I~Id~d~~~i~~~~~~~~~i~gD~~~~l~~L~~~l~  154 (177)
T d2ihta1          83 ALQTMFAPVDLVLTVGYDYAEDLRPSM--WQKGIEKKTVRISPTVNPIPRVYRPDVDVVTDVLAFVEHFETATA  154 (177)
T ss_dssp             HHHHHHTTCCEEEEETCCGGGCCCHHH--HCCSSCCEEEEEESSCCSCTTTCCCSEEEESCHHHHHHHHHHHTT
T ss_pred             HHHHHhccCCceEEecccccccccccc--cccCCccceeEEcCCHHHhCCccCCCeEEEeCHHHHHHHHHHHhh
Confidence            456788999999999999854222221  223457899999999887653  5689999999999999998874

>d1t9ba1 c.31.1.3 (A:290-460) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Acetohydroxyacid synthase catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.12  E-value=0.00058  Score=54.53  Aligned_cols=73  Identities=14%  Similarity=0.254  Sum_probs=56.7

Q ss_pred             hHHHHHhhcCCEEEEEccCCChhhcccchH-------HHhcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHHHHHH
Q 024533          103 NPAEENCRMADVVLCLGTSLQITPACNLPL-------KSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRH  173 (266)
Q Consensus       103 ~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~-------~a~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~L~~~  173 (266)
                      ..+.+.+.+||++|++|+.+.......+..       .....+.++|.|+.++....  ...++.|.||+.++|..|.+.
T Consensus        69 ~~a~~~~~~~Dlvl~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~iI~Id~d~~el~~~~~~d~~i~~D~~~~l~~L~~~  148 (171)
T d1t9ba1          69 ATANLAVQNADLIIAVGARFDDRVTGNISKFAPEARRAAAEGRGGIIHFEVSPKNINKVVQTQIAVEGDATTNLGKMMSK  148 (171)
T ss_dssp             HHHHHHHHHCSEEEEESCCCCTTTSCSGGGSSHHHHHHHHTTSCEEEEEESCGGGSSSSSCCSEEEESCHHHHHHHHHTT
T ss_pred             HHHHhhhhcccceeecccccccccccccchhhhhhhhcccCCCceEEEEeCCccccCCcccCceeEEEcHHHHHHHHHHh
Confidence            346678899999999999988766554321       12456889999999987654  357899999999999999887


Q ss_pred             cc
Q 024533          174 LN  175 (266)
Q Consensus       174 L~  175 (266)
                      ++
T Consensus       149 l~  150 (171)
T d1t9ba1         149 IF  150 (171)
T ss_dssp             SC
T ss_pred             cc
Confidence            64

>d1ozha1 c.31.1.3 (A:188-366) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Catabolic acetolactate synthase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=97.08  E-value=0.00064  Score=54.81  Aligned_cols=68  Identities=12%  Similarity=0.268  Sum_probs=53.6

Q ss_pred             HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC--CCccEEEECcHHHHHHHHHHHcc
Q 024533          104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD--KKASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d--~~adl~I~g~~~evl~~L~~~L~  175 (266)
                      .+.+.+++|||+|++|+.+.-.+...+    ...++++|.|+.++....  ...++.|.||+.++|.+|.+.+.
T Consensus        80 ~~~~~~~~aDlvl~vG~~~~~~~~~~~----~~~~~kvI~id~d~~~i~~~~~~d~~i~gD~~~~l~~L~~~l~  149 (179)
T d1ozha1          80 AGDRLLQLADLVICIGYSPVEYEPAMW----NSGNATLVHIDVLPAYEERNYTPDVELVGDIAGTLNKLAQNID  149 (179)
T ss_dssp             HHHHHHHHCSEEEEESCCGGGSCGGGT----CCSCSEEEEEESSCCCCBTTBCCSEEEESCHHHHHHHHHHTCC
T ss_pred             HHhhhhccccceEEEcccccccccccc----ccccccEEEEecchhhcCCccCCCeEEEeCHHHHHHHHHHhhh
Confidence            345678999999999998764443333    245789999999988654  34689999999999999999875

>d1q6za1 c.31.1.3 (A:182-341) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Benzoylformate decarboxylase
species: Pseudomonas putida [TaxId: 303]

Probab=96.37  E-value=0.0015  Score=51.17  Aligned_cols=71  Identities=13%  Similarity=0.156  Sum_probs=52.0

Q ss_pred             HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCC-CCccEEEECcHHHHHHHHHHHcc
Q 024533          104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKD-KKASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d-~~adl~I~g~~~evl~~L~~~L~  175 (266)
                      .+.+.+++||++|++|+.+.-....... .....++++|.|+.++.... ...++.|.|++.++|+.|.+.+.
T Consensus        78 ~~~~~l~~aDlil~lG~~l~~~~~~~~~-~~~~~~~~ii~v~~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~  149 (160)
T d1q6za1          78 AISQLLEGHDVVLVIGAPVFRYHQYDPG-QYLKPGTRLISVTCDPLEAARAPMGDAIVADIGAMASALANLVE  149 (160)
T ss_dssp             HHHHHHTTCSEEEEESSCTTCCCSCCCS-CSSCTTCEEEEEESCHHHHHHCSSSEEEESCHHHHHHHHHHHSC
T ss_pred             HHHHHHhcCCeEEEEecccccccccccc-cccccCceEEEeeCCHHHhCCCCCCeeEEeCHHHHHHHHHHhcc
Confidence            3567789999999999987544332221 11346789999999875432 23578899999999999999975

>d1efva2 c.31.1.2 (A:208-331) C-terminal domain of the electron transfer flavoprotein alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: C-terminal domain of the electron transfer flavoprotein alpha subunit
domain: C-terminal domain of the electron transfer flavoprotein alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.34  E-value=0.02  Score=43.73  Aligned_cols=59  Identities=19%  Similarity=0.210  Sum_probs=49.6

Q ss_pred             cCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCC-CCCCccEEEECcHHHHHHHHHHHc
Q 024533          111 MADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTP-KDKKASLVVHAPVDKVIAGVMRHL  174 (266)
Q Consensus       111 ~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~-~d~~adl~I~g~~~evl~~L~~~L  174 (266)
                      ..+|.|.+|-|.+++-.+.+     +.-..+|-||.++.. .=+.+|+.|-||+.++|++|.+.|
T Consensus        64 ~P~lyia~GISGa~QH~~Gi-----~~s~~IvAIN~D~~ApIf~~aD~giVgD~~evlp~L~e~l  123 (124)
T d1efva2          64 APELYIAVGISGAIQHLAGM-----KDSKTIVAINKDPEAPIFQVADYGIVADLFKVVPEMTEIL  123 (124)
T ss_dssp             CCSEEEEESCCCCHHHHTTT-----TTCSEEEEEESCTTCGGGGTCSEEEESCHHHHHHHHHHHT
T ss_pred             CCcEEEEecchhHHHHHhhc-----cCCCEEEEEeCCCCCCccccCCEEEeccHHHHHHHHHHHh
Confidence            57899999999999888776     233568999999764 446789999999999999999876

>d1ovma1 c.31.1.3 (A:181-341) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Indole-3-pyruvate decarboxylase
species: Enterobacter cloacae [TaxId: 550]

Probab=94.85  E-value=0.02  Score=44.75  Aligned_cols=69  Identities=17%  Similarity=0.238  Sum_probs=45.1

Q ss_pred             hHHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCCccEEEECcHHHHHHHHHHHcc
Q 024533          103 NPAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       103 ~~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~g~~~evl~~L~~~L~  175 (266)
                      ..+.+.+++||++|++||++.-.....+.  ....+.++|.|+.++....+.  ....-.+.++++.|.+.+.
T Consensus        88 ~~~~~~i~~aDliL~iG~~l~~~~t~~~~--~~~~~~kiI~id~d~~~i~~~--~~~~v~l~~~l~~L~e~l~  156 (161)
T d1ovma1          88 GAVKEAIEGADTVLCVGTRFTDTLTAGFT--HQLTPAQTIEVQPHAARVGDV--WFTGIPMNQAIETLVELCK  156 (161)
T ss_dssp             HHHHHHHHTSSEEEEESCCCCTTTTTTTC--CCCCTTTEEEECSSEEEETTE--EEESCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCEEEEECCccccccccccc--ccCCCceEEEEeCCHHHhCCe--eecCccHHHHHHHHHHHHH
Confidence            34567789999999999998754443332  123456799999998765432  2223345667777776654

>d3clsd2 c.31.1.2 (D:196-318) C-terminal domain of the electron transfer flavoprotein alpha subunit {Methylophilus methylotrophus [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: C-terminal domain of the electron transfer flavoprotein alpha subunit
domain: C-terminal domain of the electron transfer flavoprotein alpha subunit
species: Methylophilus methylotrophus [TaxId: 17]

Probab=94.77  E-value=0.025  Score=43.03  Aligned_cols=61  Identities=15%  Similarity=0.111  Sum_probs=49.8

Q ss_pred             hhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCC-CCCCccEEEECcHHHHHHHHHHHc
Q 024533          109 CRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTP-KDKKASLVVHAPVDKVIAGVMRHL  174 (266)
Q Consensus       109 ~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~-~d~~adl~I~g~~~evl~~L~~~L  174 (266)
                      +...+|.|.+|-|.+++-.+.+     +.-..+|-||.++.. .=+.+|+.|-||+.+++++|.++|
T Consensus        62 v~~P~lYia~GISGa~QH~~Gm-----~~s~~IVAIN~D~~ApIf~~adygiVgD~~evlp~L~~~l  123 (123)
T d3clsd2          62 VGSCKLYVAMGISGSIQHMAGM-----KHVPTIIAVNTDPGASIFTIAKYGIVADIFDIEEELKAQL  123 (123)
T ss_dssp             CTTCSEEEEESCCCCHHHHHHH-----TTCSEEEEECSCTTCGGGGTCSEEECSCHHHHHHHHHHHC
T ss_pred             ccCCcEEEEEcccchHHHHHhc-----cCCCEEEEEcCCCCCCchhhCCEEEEeeHHHHHHHHHhhC
Confidence            3457999999999999877665     334579999999754 446789999999999999998875

>d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Pyruvate decarboxylase
species: Zymomonas mobilis [TaxId: 542]

Probab=94.52  E-value=0.016  Score=45.90  Aligned_cols=67  Identities=10%  Similarity=0.165  Sum_probs=45.5

Q ss_pred             HHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCCccEEEECcHHHHHHHHHHHcc
Q 024533          105 AEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       105 a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~g~~~evl~~L~~~L~  175 (266)
                      +.+.+++|||+|++|+.+.-+......  ....+.++|.||.++......  ..-.-++.++|..|.+++.
T Consensus        83 ~~~~~~~aDlvl~lG~~~~d~~t~~~~--~~~~~~~~I~i~~d~~~i~~~--~~~~v~~~~~l~~L~~~l~  149 (175)
T d1zpda1          83 VEKTMKEADAVIALAPVFNDYSTTGWT--DIPDPKKLVLAEPRSVVVNGI--RFPSVHLKDYLTRLAQKVS  149 (175)
T ss_dssp             HHHHHHHCSEEEEESCCCBTTTTTTTT--CCCCGGGEEEECSSEEEETTE--EEESCCHHHHHHHHHHHCC
T ss_pred             HHHHHhcCceEEEEcCccCccccCCcc--ccCCCCeEEEEeCchheEccc--ccCCcCHHHHHHHHHHHhc
Confidence            566789999999999988654443332  223456799999987665431  2222367889999988764

>d1pvda1 c.31.1.3 (A:182-360) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Pyruvate decarboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.99  E-value=0.01  Score=47.37  Aligned_cols=68  Identities=13%  Similarity=0.156  Sum_probs=39.4

Q ss_pred             HHHHHhhcCCEEEEEccCCChhhcccchHHHhcCCCEEEEECCCCCCCCCC--ccEEEECcHHHHHHHHHHH
Q 024533          104 PAEENCRMADVVLCLGTSLQITPACNLPLKSLRGGGKIVIVNLQQTPKDKK--ASLVVHAPVDKVIAGVMRH  173 (266)
Q Consensus       104 ~a~~~~~~aDLlLvlGTSL~V~Pa~~L~~~a~~~g~~lViIN~~~t~~d~~--adl~I~g~~~evl~~L~~~  173 (266)
                      .+.+.+++||++|++|+.+.-.....+  .....+.++|.|+.++....+.  .++.+.++..+++.+|.+.
T Consensus        90 ~~~~~~~~aDlvl~lG~~~~d~~t~~~--~~~~~~~~iI~i~~d~~~i~~~~~~~v~i~~~l~~ll~~l~~~  159 (179)
T d1pvda1          90 EVKEAVESADLILSVGALLSDFNTGSF--SYSYKTKNIVEFHSDHMKIRNATFPGVQMKFVLQKLLTNIADA  159 (179)
T ss_dssp             HHHHHHHTCSEEEEESCCCCC------------CCCEEEEEETTEEEETTEEEETCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcCCEEEEEcCCccccccCcC--cccCCCCcEEEEeCCHHHhCCcccCCccHHHHHHHHHHHHHHH
Confidence            356778999999999998764433333  1234567899999997665432  2333445555555555443

>d1pnoa_ c.31.1.4 (A:) Transhydrogenase domain III (dIII) {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Transhydrogenase domain III (dIII)
domain: Transhydrogenase domain III (dIII)
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=91.44  E-value=0.19  Score=40.14  Aligned_cols=88  Identities=17%  Similarity=0.321  Sum_probs=62.0

Q ss_pred             ccEEEcCCCCChh---chhHHHHHhhcCCEEEEEccCCChhhcccc---------hHHHhcCCCEEEEECCCCCC-C---
Q 024533           88 DTVLDWEDALPPV---EMNPAEENCRMADVVLCLGTSLQITPACNL---------PLKSLRGGGKIVIVNLQQTP-K---  151 (266)
Q Consensus        88 P~Vv~FgE~lp~~---~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~L---------~~~a~~~g~~lViIN~~~t~-~---  151 (266)
                      -+|++=+-.+|.+   +++.....+.++|+.||+|..=.|.|++.-         |-.-.-+...+|++++.-.+ +   
T Consensus        72 mNVLLAEa~VpYd~v~emdeiN~~f~~~Dv~lViGANDvVNPaA~~dp~spi~GMPvl~v~kak~Viv~KRsm~~GyaGv  151 (180)
T d1pnoa_          72 MNVLLAEANVPYDEVFELEEINSSFQTADVAFVIGANDVTNPAAKTDPSSPIYGMPILDVEKAGTVLFIKRSMASGYAGV  151 (180)
T ss_dssp             HHHHHHHTTCCGGGEEEHHHHGGGGGGCSEEEEESCCGGGCGGGTTCTTSTTTTCCCCCGGGSSEEEEEESSSCCCTTCC
T ss_pred             hhheeeeecCCHHHHcChhhhcchhhhccEEEEecccceeChhhhcCCCCcccCCceeeeecCCEEEEEECCccCCcCCC
Confidence            4677766677765   356666679999999999999999887643         21111223467777776544 2   


Q ss_pred             -----CCCccEEEECcHHHHHHHHHHHcc
Q 024533          152 -----DKKASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       152 -----d~~adl~I~g~~~evl~~L~~~L~  175 (266)
                           ....+..+.||+.+.+.+|++.|+
T Consensus       152 ~NpLF~~~nt~MlfGDAK~~l~~l~~~l~  180 (180)
T d1pnoa_         152 ENELFFRNNTMMLFGDAKKMTEQIVQAMN  180 (180)
T ss_dssp             CCGGGTSTTEEEEESCHHHHHHHHHHHHC
T ss_pred             CCcceEcCCcEEEechHHHHHHHHHHhcC
Confidence                 234567889999999999998864

>d1ytla1 c.31.1.6 (A:17-174) Acetyl-CoA decarbonylase/synthase complex epsilon subunit 2, ACDE2 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: ACDE2-like
domain: Acetyl-CoA decarbonylase/synthase complex epsilon subunit 2, ACDE2
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.46  E-value=0.098  Score=40.85  Aligned_cols=41  Identities=15%  Similarity=0.150  Sum_probs=26.6

Q ss_pred             HhhcCCEEEEEccCCChhhc--ccchHHHhcCCCEEEEECCCCCC
Q 024533          108 NCRMADVVLCLGTSLQITPA--CNLPLKSLRGGGKIVIVNLQQTP  150 (266)
Q Consensus       108 ~~~~aDLlLvlGTSL~V~Pa--~~L~~~a~~~g~~lViIN~~~t~  150 (266)
                      .+.+|||+|.+||++.....  ..+.  -...+.++|.||....+
T Consensus        89 ~~~~aDLvi~iG~~~~~~~~~~~~~~--~~~~~~k~I~Id~~~~~  131 (158)
T d1ytla1          89 GQGNYDLVLMLGSIYYHGSQMLAAIK--NFAPHIRALAIDRYYHP  131 (158)
T ss_dssp             SSCCCSEEEEESCCHHHHHHHHHHHH--HHCTTCEEEECSSSCCT
T ss_pred             cccCcCEEEEECCcccchhhcccccc--ccCCCCeEEEEcCCccc
Confidence            34689999999998743221  1221  13567888999877544

>d1d4oa_ c.31.1.4 (A:) Transhydrogenase domain III (dIII) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Transhydrogenase domain III (dIII)
domain: Transhydrogenase domain III (dIII)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.54  E-value=0.5  Score=37.42  Aligned_cols=88  Identities=16%  Similarity=0.230  Sum_probs=59.9

Q ss_pred             ccEEEcCCCCChh---chhHHHHHhhcCCEEEEEccCCChhhccc---------chHHHhcCCCEEEEECCCCCC-C---
Q 024533           88 DTVLDWEDALPPV---EMNPAEENCRMADVVLCLGTSLQITPACN---------LPLKSLRGGGKIVIVNLQQTP-K---  151 (266)
Q Consensus        88 P~Vv~FgE~lp~~---~~~~a~~~~~~aDLlLvlGTSL~V~Pa~~---------L~~~a~~~g~~lViIN~~~t~-~---  151 (266)
                      -+|++=+-.+|.+   +++.....+.++|+.||+|..=.|.|++.         ||-.-.-+-..+|++++.-.+ +   
T Consensus        67 mNVLLAEA~VpYd~v~emdeIN~~f~~~DvalVIGANDvVNPaA~~d~~SpI~GMPvl~v~kak~viv~KRsm~~GyaGv  146 (177)
T d1d4oa_          67 LNVLLAEAGVPYDIVLEMDEINHDFPDTDLVLVIGANDTVNSAAQEDPNSIIAGMPVLEVWKSKQVIVMKRSLGVGYAAV  146 (177)
T ss_dssp             HHHHHHHHTCCGGGEEEHHHHGGGGGGCSEEEEESCSGGGCTHHHHCTTSTTTTCCCCCGGGSSCEEEEESSSCCCTTCC
T ss_pred             hhhhhhhcCCCHHHHhChHhhCcchhhccEEEEeccccccCCcccCCCCCccCCCceeEhhhCCEEEEEECCCCCCccCC
Confidence            4666666667765   35666667899999999999999977753         332111223346666666442 1   


Q ss_pred             -----CCCccEEEECcHHHHHHHHHHHcc
Q 024533          152 -----DKKASLVVHAPVDKVIAGVMRHLN  175 (266)
Q Consensus       152 -----d~~adl~I~g~~~evl~~L~~~L~  175 (266)
                           ....+..+.||+.+.+.+|.+.|.
T Consensus       147 ~NpLF~~~nt~MlfGDAk~~~~~l~~~lk  175 (177)
T d1d4oa_         147 DNPIFYKPNTAMLLGDAKKTCDALQAKVR  175 (177)
T ss_dssp             CCGGGGSTTEEEEESCHHHHHHHHHHHHH
T ss_pred             cCcceecCCcEEEechHHHHHHHHHHHHh
Confidence                 134567889999999999988764

>d2iv2x2 c.81.1.1 (X:1-564) Formate dehydrogenase H {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formate dehydrogenase/DMSO reductase, domains 1-3
superfamily: Formate dehydrogenase/DMSO reductase, domains 1-3
family: Formate dehydrogenase/DMSO reductase, domains 1-3
domain: Formate dehydrogenase H
species: Escherichia coli [TaxId: 562]

Probab=82.48  E-value=0.22  Score=45.66  Aligned_cols=54  Identities=17%  Similarity=0.298  Sum_probs=40.5

Q ss_pred             HHhhcCCEEEEEccCCChh--hcccchHHHhcCCCEEEEECCCCCCCCCCccEEEE
Q 024533          107 ENCRMADVVLCLGTSLQIT--PACNLPLKSLRGGGKIVIVNLQQTPKDKKASLVVH  160 (266)
Q Consensus       107 ~~~~~aDLlLvlGTSL~V~--Pa~~L~~~a~~~g~~lViIN~~~t~~d~~adl~I~  160 (266)
                      ..++++|++|++|+.....  +.......++++|+++|.|++..+.....+|.+|.
T Consensus       162 ~d~~~ad~il~~G~n~~~~~~~~~~~~~~a~~~G~kvvvidPr~t~ta~~Ad~~l~  217 (564)
T d2iv2x2         162 NEIDNTDLVFVFGYNPADSHPIVANHVINAKRNGAKIIVCDPRKIETARIADMHIA  217 (564)
T ss_dssp             GGGGGCSEEEEESCCHHHHCHHHHHHHHHHHHTTCEEEEECSSCCHHHHTCSEEEC
T ss_pred             ceeecCCEEEECCcccccccchHHHHHHHHHHCCCEEEEECCCCCchHHHhhhhhh
Confidence            4678999999999864431  22222345778999999999999987777888774