Citrus Sinensis ID: 024536

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260------
Protein Sequence
MLLRSASSPILRSCSFRSSPEPDLGMRIHTPRSISMSFSSSSIKRIPRTLSDGDLQQLHITKTKTLFNNPLIPRDLLVEEEEGGGGEDGQGEFSTYNETTPRLSGGLLLDHGCGGGARGNGGFLGGGGDGDSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDDQETCASQPNILPPLTAAY
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccHHHHHHHcccccccccccccccccccccccccHHccccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccHHHHHccccccHccccccccccccHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHccccHHHHHHccccccccHHHcc
Coil and Loop (DISEMBL)
mllrsasspilrscsfrsspepdlgmrihtprsismsfssssikriprtlsdgdlqqlHITKtktlfnnpliprdllveeeeggggedgqgefstynettprlsggllldhgcgggargnggflggggdgdsgkeseSMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRailakpgdgnvlsmygdliwinhkdapraksyfdravhsapddcHVLASYARFLWdageeeddddgddqetcasqpnilppltaay
Flexible Loop (DISEMBL)
mllrsasspilrscsfrsspepdlgmrihtprsismsfssssIKRIPRTLSDGDLQQLHItktktlfnnpliPRDLLVEEEEGGGGEDGQGEFSTYNETTPRLSGGLLLDHGCGGGARGNGGFLGGGGDGDSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRailakpgdgnvLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDDQetcasqpnilppltaay
Low Complexity Region (SEG)
MLLRSASSPILRSCSFRSSPEPDLGMRIHTPRsismsfssssiKRIPRTLSDGDLQQLHITKTKTLFNNPLIPRDLLVeeeeggggedgqgeFSTYNETTPRlsggllldhgcgggargnggflggggdgdsgKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWdageeeddddgddQETCASQPNILPPLTAAY
Disordered region (IsUnstruct)
*********************************************************LHITKTKTLFNNPLI*********************************GLLLDHGCGGGAR*********************DVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWD******************************
Disordered Region (DISOPRED)
MLLRSASSP***************************************************************************************************LDHGCGGGARGNGGFLGGGGDGDSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDDQETCASQPNIL*PLTAAY
Disordered Region (DISEMBL)
***********RSCSFRSSPEPDLGMRIHTPRSISMSFSSSSIKRIPRTLSDGDLQQLHITKTKTLFNNPLIPRDLLVEE***********EFSTYNETTPRLSGGLLLDHGCGGGARGNGGFLGGGGDGDSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAG*************CASQPNILPPLTAAY
Disordered Region (DISPRO)
********************************************************Q***********N**IPRD**********************ETTPRLSGGLLLDHGCGGGARGNGGFLGGGGDGDSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEED*DDGDDQETCASQPNILPPLT***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLLRSASSPILRSCSFRSSPEPDLGMRIHTPRSISMSFSSSSIKRIPRTLSDGDLQQLHITKTKTLFNNPLIPRDLLVEEEEGGGGEDGQGEFSTYNETTPRLSGGLLLDHGCGGGARGNGGFLGGGGDGDSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDDQETCASQPNILPPLTAAY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	266
118486453	304	unknown [Populus trichocarpa]	0.883	0.773	0.483	5e-50
449464638	293	PREDICTED: uncharacterized protein LOC10	0.864	0.784	0.460	2e-46
449523397	297	PREDICTED: uncharacterized protein LOC10	0.864	0.774	0.460	3e-46
224089264	251	predicted protein [Populus trichocarpa]	0.890	0.944	0.435	8e-43
255572539	292	conserved hypothetical protein [Ricinus	0.845	0.770	0.430	1e-42
224144206	307	predicted protein [Populus trichocarpa]	0.951	0.824	0.415	3e-42
217073634	292	unknown [Medicago truncatula]	0.857	0.780	0.452	7e-42
224090403	304	predicted protein [Populus trichocarpa]	0.838	0.733	0.436	2e-41
357478127	292	hypothetical protein MTR_4g114690 [Medic	0.857	0.780	0.449	4e-41
225445531	288	PREDICTED: uncharacterized protein LOC10	0.864	0.798	0.458	4e-41

>gi|118486453|gb|ABK95066.1| unknown [Populus trichocarpa]

 Score =  203 bits (517), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 129/267 (48%), Positives = 157/267 (58%), Gaps = 32/267 (11%)

Query: 1   MLLRSASSPILRSC----SFRSSPEPDLGMRIHTPRSISMSFSSS------------SIK 44
           MLLRS+S+P L S     S   SPEP+   +I   R IS++ SSS            SIK
Sbjct: 1   MLLRSSSTPFLNSWIPPHSKEPSPEPESVHQIQKTRPISLTASSSSPFSSISSQDHDSIK 60

Query: 45  RIPRTLSDGDLQQLHITKTKT---LFNNPLIPRDLLVEEE----EGG-------GGEDGQ 90
           R+ R  S+ DL+ L + K K    + N   IP D  VEE+    EGG        GE G+
Sbjct: 61  RMTRAFSEADLRDLSVPKRKPSNGILNG--IPVDEEVEEKVSFWEGGLFFEGCEAGEKGE 118

Query: 91  GEFSTYNETTPRLSGGLLLDHGCGGGARGNGGFLGGGGDGDSGKESESMDVYYQEMIKAY 150
           G+            G       CGG  R + G  GG G  +S +  E+ D YYQ MI+A 
Sbjct: 119 GDNGVLEVLVTGGGGDGGGRKFCGGRGRSDFGDDGGSGSRESNEGIETTDAYYQTMIEAN 178

Query: 151 PEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAK 210
           P + L L NYA+FLKE+R DFVKAEEYCGRAILA P D +VLSMY DLIW +HKDA RA+
Sbjct: 179 PGNPLFLRNYARFLKEVRLDFVKAEEYCGRAILANPNDADVLSMYADLIWQSHKDASRAE 238

Query: 211 SYFDRAVHSAPDDCHVLASYARFLWDA 237
           SYF RAV +APDDC+V+ASYARFLWDA
Sbjct: 239 SYFLRAVKAAPDDCYVMASYARFLWDA 265

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464638|ref|XP_004150036.1| PREDICTED: uncharacterized protein LOC101218093 [Cucumis sativus]

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 122/265 (46%), Positives = 158/265 (59%), Gaps = 35/265 (13%)

Query: 1   MLLRSASSPILRSC---SFRSSPEPDLGMRIHTPRSISMSFSSSSI--------KRIPRT 49
           M+LRSAS+P+L S    S  SS EP++  +I   RSI +S S S +        +RI RT
Sbjct: 1   MILRSASTPLLNSWLHHSRDSSLEPEIVHQIPKSRSILLSGSPSCLSPIIDDSPRRITRT 60

Query: 50  LSDGDLQQLHITKTKTLFNNPLIPRDLLVEEEEGGG-----------------GEDGQGE 92
           LS+ DL+ L + K K  F+  L     + EE  G G                 GEDG   
Sbjct: 61  LSETDLKDLSMAKMKP-FSRTLSGFSEMAEETHGVGFSCSKTASLSCGSISETGEDGGFV 119

Query: 93  FSTYNETTPRLSGGLLLDHGCGGGARGNGGFLGGGGDGDSGKESESMDVYYQEMIKAYPE 152
                       G +    G  GG   + GF      GDS + +ES D+YYQ+MI+A P 
Sbjct: 120 SVLVGGGVGGSGGRIHGGGGSDGGDDWSFGF------GDSNRGNESTDLYYQKMIEANPG 173

Query: 153 DALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY 212
           ++++L+NYA+FLKE+RGD VKA+EYCGRAIL  P DGNVLSMY DLIW   KD+PRA+SY
Sbjct: 174 NSMLLSNYARFLKEVRGDLVKAQEYCGRAILNNPEDGNVLSMYADLIWETQKDSPRAESY 233

Query: 213 FDRAVHSAPDDCHVLASYARFLWDA 237
           F++AV +AP+DC+VLASYARFLWDA
Sbjct: 234 FNQAVKAAPEDCYVLASYARFLWDA 258

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449523397|ref|XP_004168710.1| PREDICTED: uncharacterized protein LOC101231631 [Cucumis sativus]

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 122/265 (46%), Positives = 158/265 (59%), Gaps = 35/265 (13%)

Query: 1   MLLRSASSPILRSC---SFRSSPEPDLGMRIHTPRSISMSFSSSSI--------KRIPRT 49
           M+LRSAS+P+L S    S  SS EP++  +I   RSI +S S S +        +RI RT
Sbjct: 1   MILRSASTPLLNSWLHHSRDSSLEPEIVHQIPKSRSILLSGSPSCLSPIIDDSPRRITRT 60

Query: 50  LSDGDLQQLHITKTKTLFNNPLIPRDLLVEEEEGGG-----------------GEDGQGE 92
           LS+ DL+ L + K K  F+  L     + EE  G G                 GEDG   
Sbjct: 61  LSETDLKDLSMAKMKP-FSRTLSGFSEMAEETHGVGFSCSKTASLSCGSISETGEDGGFV 119

Query: 93  FSTYNETTPRLSGGLLLDHGCGGGARGNGGFLGGGGDGDSGKESESMDVYYQEMIKAYPE 152
                       G +    G  GG   + GF      GDS + +ES D+YYQ+MI+A P 
Sbjct: 120 SVLVGGGVGGSGGRIHGGGGSDGGDDWSFGF------GDSNRGNESTDLYYQKMIEANPG 173

Query: 153 DALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY 212
           ++++L+NYA+FLKE+RGD VKA+EYCGRAIL  P DGNVLSMY DLIW   KD+PRA+SY
Sbjct: 174 NSMLLSNYARFLKEVRGDLVKAQEYCGRAILNNPEDGNVLSMYADLIWETQKDSPRAESY 233

Query: 213 FDRAVHSAPDDCHVLASYARFLWDA 237
           F++AV +AP+DC+VLASYARFLWDA
Sbjct: 234 FNQAVKAAPEDCYVLASYARFLWDA 258

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224089264|ref|XP_002308666.1| predicted protein [Populus trichocarpa] gi|222854642|gb|EEE92189.1| predicted protein [Populus trichocarpa]

 Score =  179 bits (455), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 121/278 (43%), Positives = 160/278 (57%), Gaps = 41/278 (14%)

Query: 1   MLLRSASSPILRSCSFRSSPEPDLGMRIHTPRSISMSFSSSSIKRIPRTLSDGDLQQLHI 60
           MLLRS S+P+LR+   +SS          T R +SM         + RT S+ D++ L++
Sbjct: 1   MLLRSTSTPVLRTLVCQSS----------TSRPVSMC--------LQRTASEADIKPLYL 42

Query: 61  TKTKTLFNNPLIPRDLLVEEEEGGGGEDGQGEFSTYNETTPRLSGGLLLDHGCGGGARGN 120
           T+ + +F+       +L E+EE     +   E                   G GG   G+
Sbjct: 43  TRER-MFSKRSFMSPVLKEKEEMSVCIEAVEEEEMVCAGGGGGGICGSGGGGGGGWDSGH 101

Query: 121 GGFLGGGGDGDSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGR 180
             +           + ESM++YYQ MIKAYP DAL+LANYAKFLKE+RGD VKAEE+C +
Sbjct: 102 QPY---------ESDHESMNLYYQNMIKAYPGDALLLANYAKFLKEVRGDVVKAEEFCEK 152

Query: 181 AILAK-PGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGE 239
           AILA    DGNVLSMYGDLIW NHKD+ RA++YFD+AV S+PDDC+VLASYA FLWDAGE
Sbjct: 153 AILANGRDDGNVLSMYGDLIWNNHKDSNRAQAYFDQAVKSSPDDCYVLASYAHFLWDAGE 212

Query: 240 EEDDDDGDDQET---CASQPNI---------LPPLTAA 265
           E+ D++ + ++    C S P            PPL AA
Sbjct: 213 EDGDEEEETKQNEIQCDSLPTYKQIYNLPQGFPPLAAA 250

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572539|ref|XP_002527204.1| conserved hypothetical protein [Ricinus communis] gi|223533469|gb|EEF35217.1| conserved hypothetical protein [Ricinus communis]

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 114/265 (43%), Positives = 150/265 (56%), Gaps = 40/265 (15%)

Query: 1   MLLRSASSPILRSCSFRSSPEPDLGMRIH-TPRSISMS--------------FSSSSIKR 45
           MLLRSAS+PIL S  ++  PEP+   +I   PRSI+++               S  S+K+
Sbjct: 1   MLLRSASTPILNS--WKPQPEPESFHQIQKAPRSITLTACCNSSSSLSSSSYTSEDSVKK 58

Query: 46  IPRTLSDGDLQQLHITKTKTLFNNPLIPRDLLVEEEEGGGGEDGQGEFSTYNETTPRLSG 105
           + R LS+ DL+Q  + K K   NN  I  D +  EEE    +       T++ +   L  
Sbjct: 59  MTRALSETDLKQFSVLKKKQPINN--IIMDGITFEEEVEADQ------MTFSGSGLSLDS 110

Query: 106 GLLLDHG--CGGGARGNGGFLG-------------GGGDGDSGKESESMDVYYQEMIKAY 150
             L +    C  G   + G                G GD        S D+YYQ MI+A 
Sbjct: 111 SFLFNEEEECEVGKIQDNGLSAFVGGGVGGGGKICGAGDSGGRGGDGSTDLYYQNMIEAN 170

Query: 151 PEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAK 210
           P ++L L+NYA+FLKE+RGDF+KAEEY  RAILA P DGN LSMY DLIW +HKDA RA+
Sbjct: 171 PGNSLFLSNYARFLKEVRGDFIKAEEYYERAILANPSDGNSLSMYADLIWQSHKDASRAE 230

Query: 211 SYFDRAVHSAPDDCHVLASYARFLW 235
           +YFD+AV ++PDDC +LASYARFLW
Sbjct: 231 TYFDQAVKASPDDCFILASYARFLW 255

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144206|ref|XP_002325219.1| predicted protein [Populus trichocarpa] gi|222866653|gb|EEF03784.1| predicted protein [Populus trichocarpa]

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 132/318 (41%), Positives = 170/318 (53%), Gaps = 65/318 (20%)

Query: 1   MLLRSASSPILRSC----SFRSSPEPDLGMRIHTPRSISMSFSSS------------SIK 44
           MLLRS+S+PIL S     S   SPEP+   +I   RSIS++ SSS            S +
Sbjct: 1   MLLRSSSTPILNSWIPPHSKEPSPEPESLHQIQITRSISLAASSSGPFSSISSQGHDSNE 60

Query: 45  RIPRTLSDGDLQQLHITKTKTLFNNPLIPRDLLVEEEEGGGGEDGQGEFSTYNETTPRLS 104
           R+    S  DL+   + K K   +N ++   + V++E     E+ + + S +       S
Sbjct: 61  RVKIAFSKNDLRDFSVPKRKP--SNKIL-NGITVDQE---VDEEVEKKVSFWE------S 108

Query: 105 GGLLLDHGCGGGARGNGGFLG------------------------------GGGDGDSGK 134
           G L    G G    G+ G LG                              G    +S +
Sbjct: 109 GLLFEGFGVGEKGEGDNGVLGVLVTGGGSDGGGRKFCGGGGGFGSDFGDDGGSRFRESNE 168

Query: 135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSM 194
             E+ DVYYQ MI+A P + L L NYA+FLKEIR DFVKAEEYCGRAILA P D +VLSM
Sbjct: 169 GIETTDVYYQTMIEANPGNPLFLRNYARFLKEIRLDFVKAEEYCGRAILANPNDADVLSM 228

Query: 195 YGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDD-DGDDQETCA 253
           Y DLIW  HK+A RA+SYFDRAV +APDDC+V+ASYARFLWDA EEE+ + D  +  +  
Sbjct: 229 YADLIWQGHKNASRAESYFDRAVKAAPDDCYVMASYARFLWDAEEEEEGERDQRENMSKL 288

Query: 254 SQPNI------LPPLTAA 265
           S P        LPPL A+
Sbjct: 289 SPPTFFHGSRPLPPLAAS 306

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073634|gb|ACJ85177.1| unknown [Medicago truncatula]

 Score =  176 bits (447), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 120/265 (45%), Positives = 155/265 (58%), Gaps = 37/265 (13%)

Query: 1   MLLRSASSPIL-----RSCSFRSSPEPDLGMRIHTPRSISMSFSSS----------SIKR 45
           MLLRS+S+P++      + S  SSPEP+   RI   RS+++S SSS          S+ +
Sbjct: 1   MLLRSSSTPVMNPWIPHTNSKDSSPEPEFLHRIPKSRSVTLSASSSTSSSRSPICGSVSK 60

Query: 46  IPRTLSDGDLQQLHITKTKTLFNNPLIPRDLLVEEEEGGGGEDG----QGEFST------ 95
           + R LS+ DL       +  L   PL  R    +EEE G G  G       FS+      
Sbjct: 61  MTRALSETDL-------SSQLNRKPLHRRQFDEDEEESGTGTFGARSRTASFSSALCSLT 113

Query: 96  -----YNETTPRLSGGLLLDHGCGGGARGNGGFLGGGGDGDSGKESESMDVYYQEMIKAY 150
                 +E   R  G +L+    GGG   +    G    GDS   ++S D+YY+ MI+A 
Sbjct: 114 EFEESQSEVDARDGGSMLVLVEEGGGGGFDKNDGGVSRFGDSNHGNDSTDLYYRTMIEAN 173

Query: 151 PEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAK 210
           P + L L NYAK+LKE+R D+VKAEEYCGRAILA P DGNVLS+Y DLIW  HKDAPRA+
Sbjct: 174 PGNPLFLGNYAKYLKEVRKDYVKAEEYCGRAILANPNDGNVLSLYADLIWECHKDAPRAE 233

Query: 211 SYFDRAVHSAPDDCHVLASYARFLW 235
           +YFD+AV +APDDC+VLASYA FLW
Sbjct: 234 TYFDQAVKAAPDDCYVLASYAHFLW 258

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224090403|ref|XP_002308981.1| predicted protein [Populus trichocarpa] gi|222854957|gb|EEE92504.1| predicted protein [Populus trichocarpa]

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 123/282 (43%), Positives = 157/282 (55%), Gaps = 59/282 (20%)

Query: 1   MLLRSASSPILRSC----SFRSSPEPDLGMRIHTPRSISMSFS------------SSSIK 44
           MLLRS+S+PIL +     S   SPEP+   +I   RSIS++ S            + SIK
Sbjct: 1   MLLRSSSTPILNTWIPPHSKEPSPEPESLHQIQKSRSISLTASSSSSFSSISSQDNDSIK 60

Query: 45  RIPRTLSDGDLQQLHITKTKTLFNNPLIPRDLLVEEEEGGGGEDGQGEFSTYNETTPRLS 104
           R+ R  S+ DL+ L + K K        P + ++     G   D + E     + +   S
Sbjct: 61  RMTRAFSETDLRDLSVPKRK--------PSNRIL----NGISVDEEVEEEVEKKVSFLES 108

Query: 105 GGLLLDHGCGGGARG--NGGFLG---------------------------GGGDGDSGKE 135
           G      GC  G +G  + G LG                           G G G+S K 
Sbjct: 109 GWFF--EGCEVGVKGQSDSGMLGVMVTGGGSEGGGGKFYGGGGSDFGDDGGSGFGESNKG 166

Query: 136 SESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMY 195
            ES DVYYQ+MI+A P + L+L+NYAKFLKE+R DFVKAEEYCGRAILA P D +VLSMY
Sbjct: 167 IESTDVYYQKMIEADPGNPLLLSNYAKFLKEVRADFVKAEEYCGRAILASPNDADVLSMY 226

Query: 196 GDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDA 237
            DLIW + K A RA+SYFD+AV +APDDC+V+ASYARFLWDA
Sbjct: 227 ADLIWHSQKHASRAESYFDQAVKAAPDDCYVMASYARFLWDA 268

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478127|ref|XP_003609349.1| hypothetical protein MTR_4g114690 [Medicago truncatula] gi|355510404|gb|AES91546.1| hypothetical protein MTR_4g114690 [Medicago truncatula]

 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 119/265 (44%), Positives = 154/265 (58%), Gaps = 37/265 (13%)

Query: 1   MLLRSASSPIL-----RSCSFRSSPEPDLGMRIHTPRSISMSFSSS----------SIKR 45
           MLLRS+S+P++      + S  SSPEP+   RI   RS+++S SSS          S+ +
Sbjct: 1   MLLRSSSTPVMNPWIPHTNSKDSSPEPEFLHRIPKSRSVTLSASSSTSSSRSPICGSVSK 60

Query: 46  IPRTLSDGDLQQLHITKTKTLFNNPLIPRDLLVEEEEGGGGEDG----QGEFST------ 95
           + R LS+ DL       +  L   PL  R    +EEE   G  G       FS+      
Sbjct: 61  MTRALSETDL-------SSQLNRKPLHRRQFDEDEEESRTGTFGARSRTASFSSALCSLT 113

Query: 96  -----YNETTPRLSGGLLLDHGCGGGARGNGGFLGGGGDGDSGKESESMDVYYQEMIKAY 150
                 +E   R  G +L+    GGG   +    G    GDS   ++S D+YY+ MI+A 
Sbjct: 114 EFEESQSEVDARDGGSMLVLVEEGGGGGFDKNDGGVSRFGDSNHGNDSTDLYYRTMIEAN 173

Query: 151 PEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAK 210
           P + L L NYAK+LKE+R D+VKAEEYCGRAILA P DGNVLS+Y DLIW  HKDAPRA+
Sbjct: 174 PGNPLFLGNYAKYLKEVRKDYVKAEEYCGRAILANPNDGNVLSLYADLIWECHKDAPRAE 233

Query: 211 SYFDRAVHSAPDDCHVLASYARFLW 235
           +YFD+AV +APDDC+VLASYA FLW
Sbjct: 234 TYFDQAVKAAPDDCYVLASYAHFLW 258

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445531|ref|XP_002285275.1| PREDICTED: uncharacterized protein LOC100257716 [Vitis vinifera] gi|297738966|emb|CBI28211.3| unnamed protein product [Vitis vinifera]

 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 116/253 (45%), Positives = 153/253 (60%), Gaps = 23/253 (9%)

Query: 1   MLLRSASSPILRSC---SFRSSPEPDLGMRIHTPRSISMSFSSSSI-----KRIPRTLSD 52
           MLLRS+S+PIL S    S  SS EP++  +I   RSIS++ SS S      K++ R LS+
Sbjct: 1   MLLRSSSTPILNSWPPNSKESSSEPEMVPQILLSRSISLTTSSLSSVEGSSKKMSRALSE 60

Query: 53  GDLQQLHITKTKTLFNNPLIPRDLLVEEEEGGGGEDGQGEFSTYNETTPRLSGGLLLDHG 112
            DL++L + K K +         L V+E E    E+     S    +   L  G+  D G
Sbjct: 61  TDLRELSLPKRKPITKTVNRLSSLPVDERE----EEDSCPISR-TASYGGLWWGVGSDAG 115

Query: 113 CGGGARGNGGFL----------GGGGDGDSGKESESMDVYYQEMIKAYPEDALVLANYAK 162
           C G     G             G  G GDS   + +M+ YY+ MI+A P +AL+L NYA+
Sbjct: 116 CEGVCVEGGSEGGGGSDGGYAHGKSGYGDSNNGNGNMESYYRTMIEANPGNALLLGNYAR 175

Query: 163 FLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPD 222
           FLKE+RGD++KAEEYCGRAILA P DGN+LS++ DLIW  HKD+ RA+SYFD+AV ++PD
Sbjct: 176 FLKEVRGDYIKAEEYCGRAILANPNDGNILSLFADLIWQVHKDSDRAESYFDQAVKASPD 235

Query: 223 DCHVLASYARFLW 235
           DC VLASYA FLW
Sbjct: 236 DCFVLASYAHFLW 248

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	266
TAIR|locus:2149314	290	AT5G20190 "AT5G20190" [Arabido	0.372	0.341	0.616	1.2e-40
TAIR|locus:2127781	238	AT4G32340 "AT4G32340" [Arabido	0.368	0.411	0.676	3.5e-38
TAIR|locus:2016229	305	AT1G80130 [Arabidopsis thalian	0.488	0.426	0.480	6.3e-35
TAIR|locus:2141030	274	AT4G17940 "AT4G17940" [Arabido	0.353	0.343	0.574	2.5e-26
TAIR|locus:2197768	310	TPR4 "tetratricopeptide repeat	0.349	0.3	0.5	9.2e-20
TAIR|locus:2025067	552	AT1G07280 "AT1G07280" [Arabido	0.372	0.179	0.375	1.9e-11
TAIR|locus:2060669	536	AT2G29670 [Arabidopsis thalian	0.360	0.179	0.354	2.3e-11
TAIR|locus:2075616	515	AT3G47080 [Arabidopsis thalian	0.360	0.186	0.312	4.7e-06

TAIR|locus:2149314 AT5G20190 "AT5G20190" [Arabidopsis thaliana (taxid:3702)]

 Score = 352 (129.0 bits), Expect = 1.2e-40, Sum P(3) = 1.2e-40
 Identities = 61/99 (61%), Positives = 84/99 (84%)

Query:   137 ESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYG 196
             ++ DV+Y++MI+A P + + L+NYAKFLKE+R D++KAEEYCGRAIL  P DGNVL+MY 
Sbjct:   154 DNTDVHYRKMIEANPGNGIFLSNYAKFLKEVRKDYLKAEEYCGRAILVSPNDGNVLAMYA 213

Query:   197 DLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLW 235
             +L+W  HKD+ RA++YF++AV +AP+DC+V ASYARFLW
Sbjct:   214 ELVWKIHKDSSRAENYFNQAVAAAPEDCYVQASYARFLW 252

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2127781 AT4G32340 "AT4G32340" [Arabidopsis thaliana (taxid:3702)]

 Score = 364 (133.2 bits), Expect = 3.5e-38, Sum P(2) = 3.5e-38
 Identities = 67/99 (67%), Positives = 84/99 (84%)

Query:   138 SMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG-DGNVLSMYG 196
             S+D YY+EMI+ YP D L+L+NYA+FLKE++GD  KAEEYC RA+L++ G DG +LSMYG
Sbjct:   109 SVDGYYEEMIQRYPGDTLLLSNYARFLKEVKGDGRKAEEYCERAMLSESGRDGELLSMYG 168

Query:   197 DLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLW 235
             DLIW NH D  RA+SY+D+AV S+PDDC+VLASYARFLW
Sbjct:   169 DLIWKNHGDGVRAQSYYDQAVQSSPDDCNVLASYARFLW 207

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2016229 AT1G80130 [Arabidopsis thaliana (taxid:3702)]

 Score = 326 (119.8 bits), Expect = 6.3e-35, Sum P(2) = 6.3e-35
 Identities = 63/131 (48%), Positives = 84/131 (64%)

Query:   134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLS 193
             +  ++ D YY+EMI + P ++L+  NYAKFLKE++GD  KAEEYC RAIL    DGNVLS
Sbjct:   160 RSEDATDTYYREMIDSNPGNSLLTGNYAKFLKEVKGDMKKAEEYCERAILGNTNDGNVLS 219

Query:   194 MYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWXXXXXXXXXXXXXQE-TC 252
             +Y DLI  NH+D  RA SY+ +AV  +P+DC+V ASYARFLW             +E   
Sbjct:   220 LYADLILHNHQDRQRAHSYYKQAVKMSPEDCYVQASYARFLWDVDEDEEDEALGEEEENL 279

Query:   253 ASQPNILPPLT 263
             + +   +PP T
Sbjct:   280 SDETGHVPPTT 290

GO:0016020 "membrane" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IMP

TAIR|locus:2141030 AT4G17940 "AT4G17940" [Arabidopsis thaliana (taxid:3702)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 54/94 (57%), Positives = 70/94 (74%)

Query:   142 YYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI 201
             YY+EM+++ P ++L+L NY KFL E+  D   AEEY GRAIL  PGDG  LSMYG LIW 
Sbjct:   153 YYREMLRSNPNNSLLLMNYGKFLYEVEKDAEGAEEYYGRAILENPGDGEALSMYGRLIWE 212

Query:   202 NHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLW 235
               +D  RA+ YFD+AV+++P+DC VL SYARF+W
Sbjct:   213 TKRDEKRAQGYFDQAVNASPNDCMVLGSYARFMW 246

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2197768 TPR4 "tetratricopeptide repeat 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 47/94 (50%), Positives = 63/94 (67%)

Query:   142 YYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI 201
             YY+ M++ YP   L+L NYAKFL E +GD   AEEY  +  + +P DG  L+ YG L+  
Sbjct:   124 YYKGMLEEYPLHPLLLKNYAKFL-EYKGDLSGAEEYYHKCTVVEPSDGVALANYGRLVMK 182

Query:   202 NHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLW 235
              H+D  +A SYF+RAV ++PDD  VLA+YA FLW
Sbjct:   183 LHQDEAKAMSYFERAVQASPDDSIVLAAYASFLW 216

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2025067 AT1G07280 "AT1G07280" [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 1.9e-11, P = 1.9e-11
 Identities = 39/104 (37%), Positives = 56/104 (53%)

Query:   137 ESMDVY-----YQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNV 191
             ESMD +     YQ  +   P + L+LANYA+FL  I  D+ +AE+Y  RA  A+P D   
Sbjct:   428 ESMDYFKTELLYQTGLSQEPGNVLLLANYAQFLYLIIHDYDRAEKYFKRAAKAEPADAEA 487

Query:   192 LSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLW 235
             L+ Y   +W    D  RA+  +  A+ + P +    A+YA FLW
Sbjct:   488 LNKYATFLWRARNDIWRAEETYLEAISADPTNSVYSANYAHFLW 531

GO:0008150 "biological_process" evidence=ND

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

TAIR|locus:2060669 AT2G29670 [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 2.3e-11, P = 2.3e-11
 Identities = 34/96 (35%), Positives = 51/96 (53%)

Query:   140 DVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLI 199
             ++ YQ  +   P + L+LANYA+FL  +  D  +AEEY  RA+  +P D    S Y   +
Sbjct:   421 ELMYQTELSQEPNNPLLLANYAQFLYLVSNDHDRAEEYFKRAVGVEPKDAEAFSKYATFL 480

Query:   200 WINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLW 235
             W    D   A+  F  A+ + P + +  A+YA FLW
Sbjct:   481 WRARDDLWAAEETFLEAIDADPTNSYYAANYANFLW 516

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2075616 AT3G47080 [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 4.7e-06, P = 4.7e-06
 Identities = 30/96 (31%), Positives = 49/96 (51%)

Query:   140 DVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLI 199
             ++ Y+  +   P++ L+LANYA+FL  +  D  +AE    +AI ++  D    S Y   +
Sbjct:   401 ELLYKIGLAQEPDNHLLLANYAQFLYLVTQDHERAENCFKKAIESEDVDAETYSKYAIFL 460

Query:   200 WINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLW 235
             W    D   A+  F  A+ + P +    A+YA FLW
Sbjct:   461 WKVRNDLWAAEENFLEAISADPTNSFYAANYANFLW 496


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.135   0.411    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      266       197   0.00082  111 3  11 22  0.46    32
                                                     31  0.44    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  608 (65 KB)
  Total size of DFA:  168 KB (2098 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.40u 0.12s 15.52t   Elapsed:  00:00:01
  Total cpu time:  15.40u 0.12s 15.52t   Elapsed:  00:00:01
  Start:  Mon May 20 15:48:00 2013   End:  Mon May 20 15:48:01 2013

GO:0005634 "nucleus" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	266
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-06
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	2e-05
pfam13414	69	pfam13414, TPR_11, TPR repeat	6e-05
pfam13414	69	pfam13414, TPR_11, TPR repeat	2e-04
COG3063	250	COG3063, PilF, Tfp pilus assembly protein PilF [Ce	0.004

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 45.1 bits (107), Expect = 2e-06
 Identities = 16/81 (19%), Positives = 34/81 (41%), Gaps = 2/81 (2%)

Query: 142 YYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI 201
           YY++ ++  P++A    N A    +  G + +A E   +A+   P +       G   + 
Sbjct: 22  YYEKALELDPDNADAYYNLAAAYYK-LGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK 80

Query: 202 NHKDAPRAKSYFDRAVHSAPD 222
             K    A   +++A+   P+
Sbjct: 81  LGKY-EEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 3/97 (3%)

Query: 143 YQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN 202
           YQ ++K  P++A+VL N A    E      +A EY  RA+   P    +L   G  + + 
Sbjct: 793 YQTVVKKAPDNAVVLNNLAWLYLE--LKDPRALEYAERALKLAPNIPAILDTLG-WLLVE 849

Query: 203 HKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGE 239
             +A RA     +AV+ AP+   +    A  L   G 
Sbjct: 850 KGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGR 886

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 40.0 bits (94), Expect = 6e-05
 Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 1/70 (1%)

Query: 152 EDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS 211
           ++A  L N    L +  GD+ +A E   +A+   P +               KD   A  
Sbjct: 1   DNAEALKNLGNALFK-LGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALE 59

Query: 212 YFDRAVHSAP 221
             ++A+   P
Sbjct: 60  DLEKALELDP 69

Length = 69

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 10/45 (22%), Positives = 22/45 (48%)

Query: 142 YYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKP 186
            Y++ ++  P++A    N A    ++  D+ +A E   +A+   P
Sbjct: 25  AYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKALELDP 69

Length = 69

>gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

 Score = 37.4 bits (87), Expect = 0.004
 Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 4/108 (3%)

Query: 134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLS 193
            E++  D  Y++ +   P +  VL NY  FL   +G   +A +   RA+   P  G    
Sbjct: 83  GENDLADESYRKALSLAPNNGDVLNNYGAFLCA-QGRPEEAMQQFERALAD-PAYGEPSD 140

Query: 194 MYGDLIW--INHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGE 239
              +L    +      +A+ Y  RA+   P     L   AR  + AG+
Sbjct: 141 TLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGD 188

Length = 250

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	266
PRK15359	144	type III secretion system chaperone protein SscB;	99.62
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.62
PRK15359	144	type III secretion system chaperone protein SscB;	99.58
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.56
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.53
PRK12370	553	invasion protein regulator; Provisional	99.52
PRK12370	553	invasion protein regulator; Provisional	99.5
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.48
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.47
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.46
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.46
KOG0553	304	consensus TPR repeat-containing protein [General f	99.45
PRK11189	296	lipoprotein NlpI; Provisional	99.45
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.44
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.43
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.43
KOG1126	638	consensus DNA-binding cell division cycle control	99.41
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.39
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.38
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.37
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.37
PRK11189	296	lipoprotein NlpI; Provisional	99.37
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.37
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.37
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.34
KOG1126	638	consensus DNA-binding cell division cycle control	99.34
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.31
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.31
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.3
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.3
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.29
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.29
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.29
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.29
PRK11906	458	transcriptional regulator; Provisional	99.26
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.25
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.23
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.2
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.18
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.17
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.17
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.15
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.14
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.14
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.12
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.12
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.11
KOG1125	579	consensus TPR repeat-containing protein [General f	99.11
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.1
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.09
PLN02789	320	farnesyltranstransferase	99.09
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.08
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.08
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.07
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.06
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.06
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.05
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.04
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.04
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.03
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.01
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.0
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.0
KOG1125	579	consensus TPR repeat-containing protein [General f	98.97
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.96
PLN02789	320	farnesyltranstransferase	98.95
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.95
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.92
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.91
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.9
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.89
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.89
PRK11906	458	transcriptional regulator; Provisional	98.87
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.87
PRK14574	822	hmsH outer membrane protein; Provisional	98.86
KOG2076	895	consensus RNA polymerase III transcription factor	98.86
PRK10803	263	tol-pal system protein YbgF; Provisional	98.86
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.84
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.84
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.83
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.83
PF13371	73	TPR_9: Tetratricopeptide repeat	98.82
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.78
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.78
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.76
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.76
KOG0553	304	consensus TPR repeat-containing protein [General f	98.75
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.74
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.74
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.7
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.66
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.66
PF12688	120	TPR_5: Tetratrico peptide repeat	98.65
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.64
PRK15331	165	chaperone protein SicA; Provisional	98.63
KOG1129	478	consensus TPR repeat-containing protein [General f	98.63
PF13371	73	TPR_9: Tetratricopeptide repeat	98.61
PRK14574	822	hmsH outer membrane protein; Provisional	98.6
KOG2003	840	consensus TPR repeat-containing protein [General f	98.6
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.59
PRK10803	263	tol-pal system protein YbgF; Provisional	98.58
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.55
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.53
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.53
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.53
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.51
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.5
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.49
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.47
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.45
PRK15331	165	chaperone protein SicA; Provisional	98.44
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.44
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.44
PF12688	120	TPR_5: Tetratrico peptide repeat	98.41
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.38
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.36
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.36
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.34
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.33
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.33
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.32
KOG1129	478	consensus TPR repeat-containing protein [General f	98.31
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.31
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.29
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.27
KOG2003	840	consensus TPR repeat-containing protein [General f	98.26
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.25
PF13428	44	TPR_14: Tetratricopeptide repeat	98.24
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.22
PF13431	34	TPR_17: Tetratricopeptide repeat	98.22
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.2
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.2
PF13431	34	TPR_17: Tetratricopeptide repeat	98.19
KOG4234	271	consensus TPR repeat-containing protein [General f	98.16
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.14
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.14
PF13428	44	TPR_14: Tetratricopeptide repeat	98.11
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.1
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.06
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.06
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.05
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.05
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.05
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.04
KOG4555	175	consensus TPR repeat-containing protein [Function	98.03
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.03
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.03
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.03
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.01
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	97.99
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.97
PF13512	142	TPR_18: Tetratricopeptide repeat	97.96
KOG2076	895	consensus RNA polymerase III transcription factor	97.96
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.94
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.93
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.91
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.87
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.85
KOG4555	175	consensus TPR repeat-containing protein [Function	97.82
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.8
PLN03077	857	Protein ECB2; Provisional	97.79
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	97.78
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.78
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.78
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.75
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.74
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.72
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.71
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.7
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.69
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.68
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.64
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.63
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.62
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	97.62
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.62
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.61
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.59
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	97.57
PRK04841	903	transcriptional regulator MalT; Provisional	97.56
PLN03218	1060	maturation of RBCL 1; Provisional	97.49
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.46
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.44
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.43
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	97.37
PRK04841	903	transcriptional regulator MalT; Provisional	97.35
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.35
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.33
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.33
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.32
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.32
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	97.29
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	97.29
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.27
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.27
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.26
PF13512	142	TPR_18: Tetratricopeptide repeat	97.25
PLN03218	1060	maturation of RBCL 1; Provisional	97.22
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.2
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.19
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.14
KOG1915	677	consensus Cell cycle control protein (crooked neck	97.14
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.07
KOG4234	271	consensus TPR repeat-containing protein [General f	97.05
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	96.98
PLN03077	857	Protein ECB2; Provisional	96.96
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.95
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	96.92
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.91
COG5191	435	Uncharacterized conserved protein, contains HAT (H	96.84
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	96.68
KOG1915	677	consensus Cell cycle control protein (crooked neck	96.67
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	96.65
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.64
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.61
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.59
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.54
KOG4340	459	consensus Uncharacterized conserved protein [Funct	96.53
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.49
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.49
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.45
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	96.43
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.41
PRK10941	269	hypothetical protein; Provisional	96.39
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	96.37
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.36
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.33
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.31
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.3
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.22
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	96.2
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.2
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.19
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.18
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.11
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.09
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.08
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.06
KOG3364	149	consensus Membrane protein involved in organellar	95.97
KOG2471	696	consensus TPR repeat-containing protein [General f	95.93
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	95.88
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	95.85
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	95.83
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.76
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	95.73
COG4105	254	ComL DNA uptake lipoprotein [General function pred	95.67
KOG1941	518	consensus Acetylcholine receptor-associated protei	95.65
KOG3785	557	consensus Uncharacterized conserved protein [Funct	95.64
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.62
KOG1310	758	consensus WD40 repeat protein [General function pr	95.6
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.56
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	95.51
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	95.44
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	95.41
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	95.24
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	95.21
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	95.18
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	95.15
KOG1586	288	consensus Protein required for fusion of vesicles	95.14
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	95.14
KOG2796	366	consensus Uncharacterized conserved protein [Funct	95.06
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	95.04
KOG4340	459	consensus Uncharacterized conserved protein [Funct	94.99
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	94.95
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	94.9
KOG1586	288	consensus Protein required for fusion of vesicles	94.88
KOG1550	552	consensus Extracellular protein SEL-1 and related	94.8
KOG2047	835	consensus mRNA splicing factor [RNA processing and	94.77
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	94.73
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	94.69
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	94.64
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	94.58
KOG1550	552	consensus Extracellular protein SEL-1 and related	94.52
KOG1310	758	consensus WD40 repeat protein [General function pr	94.42
KOG2047	835	consensus mRNA splicing factor [RNA processing and	94.31
KOG1585	308	consensus Protein required for fusion of vesicles	94.29
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	94.25
KOG3785	557	consensus Uncharacterized conserved protein [Funct	94.24
KOG1941	518	consensus Acetylcholine receptor-associated protei	94.14
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	94.11
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	93.79
KOG2300	629	consensus Uncharacterized conserved protein [Funct	93.78
KOG0529	421	consensus Protein geranylgeranyltransferase type I	93.73
COG3898	531	Uncharacterized membrane-bound protein [Function u	93.64
PRK10941	269	hypothetical protein; Provisional	93.36
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	93.22
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	93.22
KOG1258	577	consensus mRNA processing protein [RNA processing	93.2
KOG4507	886	consensus Uncharacterized conserved protein, conta	93.05
COG2912	269	Uncharacterized conserved protein [Function unknow	93.02
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	92.88
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	92.85
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	92.71
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	92.6
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	92.58
COG3898	531	Uncharacterized membrane-bound protein [Function u	92.46
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	92.13
COG5191	435	Uncharacterized conserved protein, contains HAT (H	91.89
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	91.35
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	91.11
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	91.07
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	90.75
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	90.67
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	90.62
KOG1258	577	consensus mRNA processing protein [RNA processing	90.51
KOG2471	696	consensus TPR repeat-containing protein [General f	90.37
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	90.22
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	90.01
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	89.82
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	89.74
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	89.67
KOG4014	248	consensus Uncharacterized conserved protein (conta	88.87
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	88.79
smart00101	244	14_3_3 14-3-3 homologues. 14-3-3 homologues mediat	88.72
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	88.66
smart00101	244	14_3_3 14-3-3 homologues. 14-3-3 homologues mediat	88.23
KOG0529	421	consensus Protein geranylgeranyltransferase type I	88.03
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	87.06
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	86.61
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	85.57
COG3629	280	DnrI DNA-binding transcriptional activator of the	85.22
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	85.19
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	85.05
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	84.98
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	84.92
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	84.9
KOG3364	149	consensus Membrane protein involved in organellar	84.78
PF02184	32	HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107	84.18
KOG2300	629	consensus Uncharacterized conserved protein [Funct	83.59
COG4455	273	ImpE Protein of avirulence locus involved in tempe	83.36
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	82.17
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	81.92
KOG4814	872	consensus Uncharacterized conserved protein [Funct	81.76
KOG4814	872	consensus Uncharacterized conserved protein [Funct	81.65
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	81.47
KOG4014	248	consensus Uncharacterized conserved protein (conta	80.96
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	80.42

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.62  E-value=7e-15  Score=122.06  Aligned_cols=101  Identities=11%  Similarity=0.066  Sum_probs=80.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+.+|++++.++|.++.+|.++|.++. ..|++++|+.+|++|++++|+++.+++++|.++.. .|++++|+..|
T Consensus        38 g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~-~g~~~eAi~~~  115 (144)
T PRK15359         38 GDYSRAVIDFSWLVMAQPWSWRAHIALAGTWM-MLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM-MGEPGLAREAF  115 (144)
T ss_pred             CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            57788888888888888888888888887765 46888888888888888888888888888877765 68888888888


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHH
Q 024536          214 DRAVHSAPDDCHVLASYARFLWD  236 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~  236 (266)
                      ++|++++|+++.++.+.+.++..
T Consensus       116 ~~Al~~~p~~~~~~~~~~~~~~~  138 (144)
T PRK15359        116 QTAIKMSYADASWSEIRQNAQIM  138 (144)
T ss_pred             HHHHHhCCCChHHHHHHHHHHHH
Confidence            88888888888887777766554

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.62  E-value=5.6e-15  Score=129.17  Aligned_cols=123  Identities=13%  Similarity=0.170  Sum_probs=109.7

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--HHHHH
Q 024536          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKD--APRAK  210 (266)
Q Consensus       133 ~~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd--~deAi  210 (266)
                      .++.++++..|+++++.+|+++.+|.++|.++. ..|++++|..+|++|++++|+++.++.++|.+++...|+  +++|+
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~-~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~  130 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYL-WRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR  130 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence            467899999999999999999999999999876 689999999999999999999999999999976554676  59999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccccccccccCCCC
Q 024536          211 SYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDDQETCASQP  256 (266)
Q Consensus       211 ~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~~~~~~~~~  256 (266)
                      .++++|++++|+++.++..+|..+.+.|++++|++.-+..-..-||
T Consensus       131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~  176 (198)
T PRK10370        131 EMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP  176 (198)
T ss_pred             HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            9999999999999999999999999999999999765444444444

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.58  E-value=1.2e-14  Score=120.57  Aligned_cols=104  Identities=13%  Similarity=0.072  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024536          139 MDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVH  218 (266)
Q Consensus       139 A~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~  218 (266)
                      -+.+|+++++++|++   ++++|..+. ..|++++|..+|++++.++|.++.+|.++|.++.. .|++++|+.+|++|++
T Consensus        12 ~~~~~~~al~~~p~~---~~~~g~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~y~~Al~   86 (144)
T PRK15359         12 PEDILKQLLSVDPET---VYASGYASW-QEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMM-LKEYTTAINFYGHALM   86 (144)
T ss_pred             HHHHHHHHHHcCHHH---HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-HhhHHHHHHHHHHHHh
Confidence            357999999999996   567788776 58999999999999999999999999999998876 7999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCcccccccc
Q 024536          219 SAPDDCHVLASYARFLWDAGEEEDDDDGD  247 (266)
Q Consensus       219 l~P~da~a~~~lA~ll~~~G~~~eA~~~~  247 (266)
                      ++|+++.+++++|.++...|++++|++.-
T Consensus        87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~  115 (144)
T PRK15359         87 LDASHPEPVYQTGVCLKMMGEPGLAREAF  115 (144)
T ss_pred             cCCCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999999999643

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.56  E-value=2e-14  Score=142.11  Aligned_cols=111  Identities=15%  Similarity=0.162  Sum_probs=96.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      |..+-|+..|++||++.|+.++++.|+|.+|. ..|+..+|+.||.+||.+.|+++++++|+|.++.+ ++.+++|..+|
T Consensus       300 G~ldlAI~~Ykral~~~P~F~~Ay~NlanALk-d~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E-~~~~e~A~~ly  377 (966)
T KOG4626|consen  300 GLLDLAIDTYKRALELQPNFPDAYNNLANALK-DKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYRE-QGKIEEATRLY  377 (966)
T ss_pred             ccHHHHHHHHHHHHhcCCCchHHHhHHHHHHH-hccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hccchHHHHHH
Confidence            67888899999999999999999999988887 46888999999999999999999999999988876 68888888888


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      ++|++..|+.+.++.+||.+|.++|+.++|+.+
T Consensus       378 ~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~  410 (966)
T KOG4626|consen  378 LKALEVFPEFAAAHNNLASIYKQQGNLDDAIMC  410 (966)
T ss_pred             HHHHhhChhhhhhhhhHHHHHHhcccHHHHHHH
Confidence            888888888888888888888888888888843

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.53  E-value=3.7e-15  Score=147.26  Aligned_cols=112  Identities=13%  Similarity=0.146  Sum_probs=74.4

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 024536          135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFD  214 (266)
Q Consensus       135 ~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~e  214 (266)
                      .+++|+.+|.+|+.+.|+++.++.|+|.+++ .+|+++-|+.+|+|||+++|+.+.++.|+|+++-+ .|+.++|+.+|.
T Consensus       267 ~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYy-eqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd-~G~V~ea~~cYn  344 (966)
T KOG4626|consen  267 IFDRAVSCYLRALNLRPNHAVAHGNLACIYY-EQGLLDLAIDTYKRALELQPNFPDAYNNLANALKD-KGSVTEAVDCYN  344 (966)
T ss_pred             cchHHHHHHHHHHhcCCcchhhccceEEEEe-ccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHh-ccchHHHHHHHH
Confidence            3344444444444444444444444443333 25777777777777777777777777777777765 677788888888


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCccccccccc
Q 024536          215 RAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDD  248 (266)
Q Consensus       215 kAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~  248 (266)
                      +|+.+.|+.+++.++||.++.++|..++|...-+
T Consensus       345 kaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~  378 (966)
T KOG4626|consen  345 KALRLCPNHADAMNNLGNIYREQGKIEEATRLYL  378 (966)
T ss_pred             HHHHhCCccHHHHHHHHHHHHHhccchHHHHHHH
Confidence            8888888888888888888888888777775433

>PRK12370 invasion protein regulator; Provisional

Probab=99.52  E-value=9.1e-14  Score=138.14  Aligned_cols=112  Identities=9%  Similarity=0.038  Sum_probs=102.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+.++++|++++|+++.+|..+|.++. ..|++++|+.+|++|++++|+++.+++++|.++.. .|++++|+.+|
T Consensus       318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~-~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~G~~~eAi~~~  395 (553)
T PRK12370        318 NAMIKAKEHAIKATELDHNNPQALGLLGLINT-IHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFM-AGQLEEALQTI  395 (553)
T ss_pred             hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence            56899999999999999999999999998776 58999999999999999999999999999998876 89999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCcccccccc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGD  247 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~  247 (266)
                      ++|++++|+++.++..++.+++..|++++|++..
T Consensus       396 ~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~  429 (553)
T PRK12370        396 NECLKLDPTRAAAGITKLWITYYHTGIDDAIRLG  429 (553)
T ss_pred             HHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence            9999999999888777777788899999998653

>PRK12370 invasion protein regulator; Provisional

Probab=99.50  E-value=9.9e-14  Score=137.90  Aligned_cols=124  Identities=15%  Similarity=0.108  Sum_probs=108.6

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 024536          132 SGKESESMDVYYQEMIKAYPEDALVLANYAKFLKE--------IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINH  203 (266)
Q Consensus       132 ~~~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~--------~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~  203 (266)
                      +.+++++|+++|++|++++|+++.+|.++|.++..        ..+++++|+.++++|++++|+++.++..+|.++.. .
T Consensus       273 ~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~-~  351 (553)
T PRK12370        273 TPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTI-H  351 (553)
T ss_pred             CHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-c
Confidence            44678899999999999999999999999976431        12458999999999999999999999999988866 8


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccccccccccCCCC
Q 024536          204 KDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDDQETCASQP  256 (266)
Q Consensus       204 gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~~~~~~~~~  256 (266)
                      |++++|+.+|++|++++|+++.++..+|.++...|++++|++.-+..-.+.|.
T Consensus       352 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~  404 (553)
T PRK12370        352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT  404 (553)
T ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999999999999999999765555444444

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.48  E-value=2.2e-13  Score=109.23  Aligned_cols=105  Identities=16%  Similarity=0.066  Sum_probs=95.8

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 024536          141 VYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSA  220 (266)
Q Consensus       141 ~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~  220 (266)
                      ++|+++++++|++..+++.+|..+. ..+++++|..+|++++..+|+++.++.++|.++.. .+++++|+.+|++++.++
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~   81 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLY-QQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQM-LKEYEEAIDAYALAAALD   81 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHH-HcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcC
Confidence            4889999999999999999998876 57999999999999999999999999999998876 689999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCcccccccc
Q 024536          221 PDDCHVLASYARFLWDAGEEEDDDDGD  247 (266)
Q Consensus       221 P~da~a~~~lA~ll~~~G~~~eA~~~~  247 (266)
                      |+++..+..+|.+++..|++++|++..
T Consensus        82 p~~~~~~~~la~~~~~~g~~~~A~~~~  108 (135)
T TIGR02552        82 PDDPRPYFHAAECLLALGEPESALKAL  108 (135)
T ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence            999999999999999999999998643

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.47  E-value=4.3e-13  Score=134.35  Aligned_cols=111  Identities=15%  Similarity=0.104  Sum_probs=82.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+.+|+++++++|+++.+|.++|.++. ..|++++|+.+|++|++++|+++.+++++|.+++. .|++++|+.+|
T Consensus       345 g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~-~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~  422 (615)
T TIGR00990       345 GKHLEALADLSKSIELDPRVTQSYIKRASMNL-ELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFI-KGEFAQAGKDY  422 (615)
T ss_pred             CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            57777777777777777777777777777665 46777777777777777777777777777776655 67777777777


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      ++++.++|++..++.++|.++...|++++|++.
T Consensus       423 ~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~  455 (615)
T TIGR00990       423 QKSIDLDPDFIFSHIQLGVTQYKEGSIASSMAT  455 (615)
T ss_pred             HHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            777777777777777777777777777777754

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.46  E-value=4.4e-13  Score=119.61  Aligned_cols=109  Identities=19%  Similarity=0.295  Sum_probs=83.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++..|.+-+++||+.||++..+|..+|.++ +..|+.+.|.+.|++|+.++|++.++++|||+++.. +|++++|..+|
T Consensus        49 gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Y-q~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~-qg~~~eA~q~F  126 (250)
T COG3063          49 GDYAQAKKNLEKALEHDPSYYLAHLVRAHYY-QKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA-QGRPEEAMQQF  126 (250)
T ss_pred             CCHHHHHHHHHHHHHhCcccHHHHHHHHHHH-HHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh-CCChHHHHHHH
Confidence            5778888888888888888888888888655 367888888888888888888888888888888776 67777777777


Q ss_pred             HHHHHhCCCC---HHHHHHHHHHHHHcCCcccccc
Q 024536          214 DRAVHSAPDD---CHVLASYARFLWDAGEEEDDDD  245 (266)
Q Consensus       214 ekAL~l~P~d---a~a~~~lA~ll~~~G~~~eA~~  245 (266)
                      ++|+. +|..   +..+.|++.+-.++|+++.|.+
T Consensus       127 ~~Al~-~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~  160 (250)
T COG3063         127 ERALA-DPAYGEPSDTLENLGLCALKAGQFDQAEE  160 (250)
T ss_pred             HHHHh-CCCCCCcchhhhhhHHHHhhcCCchhHHH
Confidence            77776 4543   3457777777777777777764

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.46  E-value=6.9e-13  Score=132.84  Aligned_cols=112  Identities=16%  Similarity=0.202  Sum_probs=106.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+.+|+++++++|+++.+|+++|.++. ..|++++|+.+|++|+.++|++..++.++|.+++. .|++++|+.+|
T Consensus       379 g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~-~g~~~eA~~~~  456 (615)
T TIGR00990       379 GDPDKAEEDFDKALKLNSEDPDIYYHRAQLHF-IKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK-EGSIASSMATF  456 (615)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence            68999999999999999999999999999876 58999999999999999999999999999998876 89999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCcccccccc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGD  247 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~  247 (266)
                      ++++...|+++.++..+|.++...|++++|++..
T Consensus       457 ~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~  490 (615)
T TIGR00990       457 RRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKF  490 (615)
T ss_pred             HHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHH
Confidence            9999999999999999999999999999998543

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.45  E-value=6.2e-13  Score=122.28  Aligned_cols=108  Identities=18%  Similarity=0.176  Sum_probs=102.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      ++|.+|+..|.+||+++|.|+..|-|.|.++. ..|.++.|.+-++.||.+||....+|..+|.+++. +|++++|++.|
T Consensus        95 ~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~-~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~-~gk~~~A~~ay  172 (304)
T KOG0553|consen   95 KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYS-KLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA-LGKYEEAIEAY  172 (304)
T ss_pred             hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHH-HhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc-cCcHHHHHHHH
Confidence            79999999999999999999999999998886 57999999999999999999999999999999987 89999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCcccc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDD  243 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA  243 (266)
                      +|||+++|++..++.+|.++-..+++....
T Consensus       173 kKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~  202 (304)
T KOG0553|consen  173 KKALELDPDNESYKSNLKIAEQKLNEPKSS  202 (304)
T ss_pred             HhhhccCCCcHHHHHHHHHHHHHhcCCCcc
Confidence            999999999999999999999888887733

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.45  E-value=1.4e-12  Score=120.06  Aligned_cols=110  Identities=11%  Similarity=0.046  Sum_probs=95.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+..|++|++++|+++.+|+++|.++. ..|++++|+..|++|++++|++..++.++|.+++. .|++++|+..|
T Consensus        78 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~g~~~eA~~~~  155 (296)
T PRK11189         78 GLRALARNDFSQALALRPDMADAYNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYY-GGRYELAQDDL  155 (296)
T ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence            68899999999999999999999999998876 68999999999999999999999999999998876 79999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      +++++++|+++.... ...+....++.++|++.
T Consensus       156 ~~al~~~P~~~~~~~-~~~l~~~~~~~~~A~~~  187 (296)
T PRK11189        156 LAFYQDDPNDPYRAL-WLYLAESKLDPKQAKEN  187 (296)
T ss_pred             HHHHHhCCCCHHHHH-HHHHHHccCCHHHHHHH
Confidence            999999999985322 22234455677888754

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.44  E-value=2e-12  Score=122.38  Aligned_cols=103  Identities=17%  Similarity=0.138  Sum_probs=96.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+.+|++||+++|+++.+|+++|.++. ..|++++|+.++++||.++|+++.+|+++|.+++. .|++++|+.+|
T Consensus        16 ~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~-~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~-lg~~~eA~~~~   93 (356)
T PLN03088         16 DDFALAVDLYTQAIDLDPNNAELYADRAQANI-KLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK-LEEYQTAKAAL   93 (356)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-hCCHHHHHHHH
Confidence            68999999999999999999999999999886 58999999999999999999999999999998877 79999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcC
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAG  238 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G  238 (266)
                      ++|+.++|+++.+...++.+...+.
T Consensus        94 ~~al~l~P~~~~~~~~l~~~~~kl~  118 (356)
T PLN03088         94 EKGASLAPGDSRFTKLIKECDEKIA  118 (356)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999888888766553

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.43  E-value=1.1e-12  Score=138.39  Aligned_cols=113  Identities=16%  Similarity=0.163  Sum_probs=105.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+.+|++|++++|+ +.++.++|.++. ..|++++|+.+|++|++++|+++.++.++|.++.. .|++++|+.+|
T Consensus       590 Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~-~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~-~G~~eeAi~~l  666 (987)
T PRK09782        590 GQPELALNDLTRSLNIAPS-ANAYVARATIYR-QRHNVPAAVSDLRAALELEPNNSNYQAALGYALWD-SGDIAQSREML  666 (987)
T ss_pred             CCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence            6899999999999999996 999999998876 58999999999999999999999999999998876 89999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCcccccccccc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDDQ  249 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~~  249 (266)
                      ++|++++|+++.++.++|.++...|++++|++.-+.
T Consensus       667 ~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~  702 (987)
T PRK09782        667 ERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARL  702 (987)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            999999999999999999999999999999965433

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.43  E-value=1.2e-12  Score=116.87  Aligned_cols=111  Identities=23%  Similarity=0.264  Sum_probs=103.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILA--KPGDGNVLSMYGDLIWINHKDAPRAKS  211 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~l--dP~da~al~nla~ll~~~~gd~deAi~  211 (266)
                      ++.+.|.+.|++|+.++|++.++++|||.||+ .+|++++|..+|++|+..  -|..+..+-|+|++.++ +|+++.|..
T Consensus        83 Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC-~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~-~gq~~~A~~  160 (250)
T COG3063          83 GENDLADESYRKALSLAPNNGDVLNNYGAFLC-AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALK-AGQFDQAEE  160 (250)
T ss_pred             CChhhHHHHHHHHHhcCCCccchhhhhhHHHH-hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhh-cCCchhHHH
Confidence            78999999999999999999999999999999 479999999999999985  35667899999988876 899999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536          212 YFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       212 ~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      +|+|+++++|+++.++..++..+++.|++.+|..-
T Consensus       161 ~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~  195 (250)
T COG3063         161 YLKRALELDPQFPPALLELARLHYKAGDYAPARLY  195 (250)
T ss_pred             HHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence            99999999999999999999999999999999843

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.41  E-value=1.3e-13  Score=136.71  Aligned_cols=124  Identities=16%  Similarity=0.143  Sum_probs=105.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      ++++.|+++|+||+++||+++.+|..+|.-+. ...++|+|+.+|+.||..+|.+-.||+.+|.+|.+ +++++.|+-+|
T Consensus       435 kdh~~Aik~f~RAiQldp~faYayTLlGhE~~-~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~K-qek~e~Ae~~f  512 (638)
T KOG1126|consen  435 KDHDTAIKCFKRAIQLDPRFAYAYTLLGHESI-ATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLK-QEKLEFAEFHF  512 (638)
T ss_pred             hHHHHHHHHHHHhhccCCccchhhhhcCChhh-hhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheec-cchhhHHHHHH
Confidence            68899999999999999999988888886443 45778999999999999999999999999988876 78899999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCcccccccccccccCCCCCCC
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDDQETCASQPNIL  259 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~~~~~~~~~~~~  259 (266)
                      ++|++++|.+..+...++.++.+.|+.++|++.-+..-|+-|.+.+
T Consensus       513 qkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l  558 (638)
T KOG1126|consen  513 QKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPL  558 (638)
T ss_pred             HhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCch
Confidence            9999999998888888999999999999998877777776666553

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.39  E-value=6.3e-12  Score=105.57  Aligned_cols=111  Identities=23%  Similarity=0.309  Sum_probs=89.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAK--PGDGNVLSMYGDLIWINHKDAPRAKS  211 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ld--P~da~al~nla~ll~~~~gd~deAi~  211 (266)
                      +++++|+++|+++++.+|.++.++.++|.++. ..|++++|+.+|++++...  |.....+.++|.++.. .|++++|+.
T Consensus        79 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~  156 (234)
T TIGR02521        79 GELEKAEDSFRRALTLNPNNGDVLNNYGTFLC-QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALK-AGDFDKAEK  156 (234)
T ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHH-cCCHHHHHH
Confidence            57788888888888888888888888887765 5788888888888888753  4556777778877765 788888888


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536          212 YFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       212 ~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      +|++++..+|+++.++..++.++...|++++|.+.
T Consensus       157 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  191 (234)
T TIGR02521       157 YLTRALQIDPQRPESLLELAELYYLRGQYKDARAY  191 (234)
T ss_pred             HHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHH
Confidence            88888888888888888888888888888888754

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.38  E-value=3.4e-12  Score=129.55  Aligned_cols=112  Identities=16%  Similarity=0.129  Sum_probs=98.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVK----AEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRA  209 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~----A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deA  209 (266)
                      +++++|+..|+++++.+|+++.+++++|.++. ..|++++    |+.+|++|++++|+++.++.++|.++.. .|++++|
T Consensus       226 g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~-~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~g~~~eA  303 (656)
T PRK15174        226 GKYQEAIQTGESALARGLDGAALRRSLGLAYY-QSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR-TGQNEKA  303 (656)
T ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-CCCHHHH
Confidence            68899999999999999999999999998776 4788875    8999999999999999999999988876 7899999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccccc
Q 024536          210 KSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGD  247 (266)
Q Consensus       210 i~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~  247 (266)
                      +.+|++++.++|+++.++..++.++...|++++|+++-
T Consensus       304 ~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l  341 (656)
T PRK15174        304 IPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEF  341 (656)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            99999999999999999999999999999999998653

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.37  E-value=1.3e-11  Score=103.70  Aligned_cols=111  Identities=22%  Similarity=0.359  Sum_probs=102.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+..|+++++.+|+++.++..+|.++. ..|++++|+.+|++++..+|.++.++.+++.++.. .|++++|+.+|
T Consensus        45 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~g~~~~A~~~~  122 (234)
T TIGR02521        45 GDLEVAKENLDKALEHDPDDYLAYLALALYYQ-QLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQ-QGKYEQAMQQF  122 (234)
T ss_pred             CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cccHHHHHHHH
Confidence            68999999999999999999999999998876 58999999999999999999999999999998876 89999999999


Q ss_pred             HHHHHhC--CCCHHHHHHHHHHHHHcCCccccccc
Q 024536          214 DRAVHSA--PDDCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       214 ekAL~l~--P~da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      ++++...  |....++..+|.+++..|++++|++.
T Consensus       123 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  157 (234)
T TIGR02521       123 EQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY  157 (234)
T ss_pred             HHHHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence            9999864  45677889999999999999999854

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.37  E-value=5.2e-12  Score=129.06  Aligned_cols=110  Identities=10%  Similarity=0.061  Sum_probs=105.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +.+++|+.+++++++++|++..++.+++.+|. ..+++++|+..+++++..+|+++.+++.+|.++.+ .|++++|+.+|
T Consensus       100 g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~-~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~-~g~~~~A~~~y  177 (694)
T PRK15179        100 HRSDEGLAVWRGIHQRFPDSSEAFILMLRGVK-RQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDE-IGQSEQADACF  177 (694)
T ss_pred             CCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHH-HhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-hcchHHHHHHH
Confidence            78899999999999999999999999999997 57999999999999999999999999999998866 89999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCcccccc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDD  245 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~  245 (266)
                      +++++.+|+++.++.++|.++...|+.++|..
T Consensus       178 ~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~  209 (694)
T PRK15179        178 ERLSRQHPEFENGYVGWAQSLTRRGALWRARD  209 (694)
T ss_pred             HHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence            99999999999999999999999999999984

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.37  E-value=4.8e-12  Score=116.51  Aligned_cols=112  Identities=14%  Similarity=0.097  Sum_probs=101.5

Q ss_pred             CCHHHHHHHHHHHHHHCC---CC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 024536          134 KESESMDVYYQEMIKAYP---ED-ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRA  209 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P---~~-~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deA  209 (266)
                      ...+.++..+.++|...|   .+ +.+|+++|.++. ..|++++|...|++|++++|+++.+|+++|.++.. .|++++|
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~-~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~-~g~~~~A  117 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYD-SLGLRALARNDFSQALALRPDMADAYNYLGIYLTQ-AGNFDAA  117 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-CCCHHHH
Confidence            477899999999997444   33 678999998775 68999999999999999999999999999988866 8999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccccc
Q 024536          210 KSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGD  247 (266)
Q Consensus       210 i~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~  247 (266)
                      +..|++|++++|++..++.++|.++...|++++|++..
T Consensus       118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~  155 (296)
T PRK11189        118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDL  155 (296)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            99999999999999999999999999999999999643

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.37  E-value=1.4e-11  Score=98.83  Aligned_cols=92  Identities=11%  Similarity=0.053  Sum_probs=86.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+.+|++++..+|.++.++.++|.++. ..+++++|..+|++++..+|.++.+++++|.+++. .|++++|+.+|
T Consensus        31 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~  108 (135)
T TIGR02552        31 GRYDEALKLFQLLAAYDPYNSRYWLGLAACCQ-MLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA-LGEPESALKAL  108 (135)
T ss_pred             ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            68999999999999999999999999999886 57999999999999999999999999999998876 79999999999


Q ss_pred             HHHHHhCCCCHHHH
Q 024536          214 DRAVHSAPDDCHVL  227 (266)
Q Consensus       214 ekAL~l~P~da~a~  227 (266)
                      +++++++|++....
T Consensus       109 ~~al~~~p~~~~~~  122 (135)
T TIGR02552       109 DLAIEICGENPEYS  122 (135)
T ss_pred             HHHHHhccccchHH
Confidence            99999999988754

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.37  E-value=1.6e-12  Score=117.46  Aligned_cols=112  Identities=22%  Similarity=0.251  Sum_probs=81.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      |+.++|+.+|++||+++|+++.++..++.++. ..|+++++...+++.....|.|+..+..+|.++.. .|++++|+.+|
T Consensus       160 G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li-~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~-lg~~~~Al~~~  237 (280)
T PF13429_consen  160 GDPDKALRDYRKALELDPDDPDARNALAWLLI-DMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQ-LGRYEEALEYL  237 (280)
T ss_dssp             CHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHH-HT-HHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcc-ccccccccccc
Confidence            57788888888888888888888888887765 46778888888888777778888888888888766 68999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCcccccccc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGD  247 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~  247 (266)
                      ++++..+|+|+.++..||.++...|+.++|.++.
T Consensus       238 ~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~  271 (280)
T PF13429_consen  238 EKALKLNPDDPLWLLAYADALEQAGRKDEALRLR  271 (280)
T ss_dssp             HHHHHHSTT-HHHHHHHHHHHT------------
T ss_pred             cccccccccccccccccccccccccccccccccc
Confidence            9999999999999999999999999999999764

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.34  E-value=1.4e-11  Score=107.65  Aligned_cols=91  Identities=13%  Similarity=0.203  Sum_probs=83.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGD--FVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS  211 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd--~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~  211 (266)
                      +++++|+.+|++|++++|+++.++.++|.+++...|+  +++|.+.+++|++++|+++.+++++|..+++ .|++++|+.
T Consensus        87 g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~-~g~~~~Ai~  165 (198)
T PRK10370         87 NDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFM-QADYAQAIE  165 (198)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHH-cCCHHHHHH
Confidence            6899999999999999999999999999976545676  5999999999999999999999999998877 899999999


Q ss_pred             HHHHHHHhCCCCHH
Q 024536          212 YFDRAVHSAPDDCH  225 (266)
Q Consensus       212 ~~ekAL~l~P~da~  225 (266)
                      +|+++++++|.+..
T Consensus       166 ~~~~aL~l~~~~~~  179 (198)
T PRK10370        166 LWQKVLDLNSPRVN  179 (198)
T ss_pred             HHHHHHhhCCCCcc
Confidence            99999999996543

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.34  E-value=1.1e-12  Score=130.25  Aligned_cols=119  Identities=13%  Similarity=0.130  Sum_probs=108.8

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++|+|..+|++||..+|.+..||+-+|.++. .+++++.|+-+|++|+.++|.+...+..+|.++.+ .|+.|+|+.+|
T Consensus       469 ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~-Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~-~k~~d~AL~~~  546 (638)
T KOG1126|consen  469 EEFDKAMKSFRKALGVDPRHYNAWYGLGTVYL-KQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQ-LKRKDKALQLY  546 (638)
T ss_pred             HHHHhHHHHHHhhhcCCchhhHHHHhhhhhee-ccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHH-hhhhhHHHHHH
Confidence            88999999999999999999999999999876 58999999999999999999999999999998866 78999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCcccccccccccccCC
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDDQETCAS  254 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~~~~~~~  254 (266)
                      ++|+.++|.|+-..+..|.+++..+++++|.++-|.-....
T Consensus       547 ~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~v  587 (638)
T KOG1126|consen  547 EKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELV  587 (638)
T ss_pred             HHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999997644433333

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.31  E-value=2.6e-11  Score=120.91  Aligned_cols=110  Identities=25%  Similarity=0.326  Sum_probs=67.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+.+|+++++.+|+++.++.+++.++. ..++ .+|+.++++++.+.|+++.++.++|.++.. .|++++|+.+|
T Consensus       784 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~A~~~~  860 (899)
T TIGR02917       784 KDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYL-ELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVE-KGEADRALPLL  860 (899)
T ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            45566666666666666666666666655544 2444 556666666666666666666666665544 56666666666


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      +++++++|.++.++..++.+++..|++++|++.
T Consensus       861 ~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  893 (899)
T TIGR02917       861 RKAVNIAPEAAAIRYHLALALLATGRKAEARKE  893 (899)
T ss_pred             HHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHH
Confidence            666666666666666666666666666666543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.31  E-value=2.6e-11  Score=109.63  Aligned_cols=113  Identities=16%  Similarity=0.112  Sum_probs=106.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++..|+..+++|.+++|+|+.+|+.+|.+|. ..|+++.|...|.+|+++.|+++.++.|+|..++. .||++.|+.++
T Consensus       114 g~~~~A~~~~rkA~~l~p~d~~~~~~lgaald-q~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L-~gd~~~A~~ll  191 (257)
T COG5010         114 GNFGEAVSVLRKAARLAPTDWEAWNLLGAALD-QLGRFDEARRAYRQALELAPNEPSIANNLGMSLLL-RGDLEDAETLL  191 (257)
T ss_pred             cchHHHHHHHHHHhccCCCChhhhhHHHHHHH-HccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH-cCCHHHHHHHH
Confidence            68899999999999999999999999999885 68999999999999999999999999999988765 89999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCccccccccc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDD  248 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~  248 (266)
                      .+|....+.+..+..+++.+.-.+|++++|.++..
T Consensus       192 l~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~  226 (257)
T COG5010         192 LPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV  226 (257)
T ss_pred             HHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence            99999999999999999999999999999997643

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.30  E-value=1.5e-11  Score=118.77  Aligned_cols=110  Identities=20%  Similarity=0.165  Sum_probs=103.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+.+|++||++||....+|..+|.-+.+ +++..+|...|++||+++|-|-.+|+.+|..|.. .+-..=|+-||
T Consensus       344 ~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvE-mKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei-m~Mh~YaLyYf  421 (559)
T KOG1155|consen  344 SEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVE-MKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI-MKMHFYALYYF  421 (559)
T ss_pred             HhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHH-hcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH-hcchHHHHHHH
Confidence            689999999999999999999999999987654 6888999999999999999999999999998854 78999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCcccccc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDD  245 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~  245 (266)
                      ++|+.+.|+|..+|..+|.+|-..++.+||++
T Consensus       422 qkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiK  453 (559)
T KOG1155|consen  422 QKALELKPNDSRLWVALGECYEKLNRLEEAIK  453 (559)
T ss_pred             HHHHhcCCCchHHHHHHHHHHHHhccHHHHHH
Confidence            99999999999999999999999999999994

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.30  E-value=1.8e-11  Score=129.23  Aligned_cols=110  Identities=11%  Similarity=0.039  Sum_probs=103.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+.+|+++++++|+++.+++++|.++. ..|++++|+.+|++|++++|+++.+++++|.++.. .|++++|+.+|
T Consensus       623 G~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~-~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~-lGd~~eA~~~l  700 (987)
T PRK09782        623 HNVPAAVSDLRAALELEPNNSNYQAALGYALW-DSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQR-LDDMAATQHYA  700 (987)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence            78999999999999999999999999999886 58999999999999999999999999999999866 89999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCcccccc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDD  245 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~  245 (266)
                      ++|++++|+++.+...++.++....+++.|.+
T Consensus       701 ~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~  732 (987)
T PRK09782        701 RLVIDDIDNQALITPLTPEQNQQRFNFRRLHE  732 (987)
T ss_pred             HHHHhcCCCCchhhhhhhHHHHHHHHHHHHHH
Confidence            99999999999999999999988888887774

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.29  E-value=5.8e-11  Score=100.77  Aligned_cols=86  Identities=12%  Similarity=-0.061  Sum_probs=74.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+++|+-++.++|.++..|++||.++. .+|++++|+.+|.+|+.++|+||.++.++|.++.. .|+.+.|+..|
T Consensus        49 G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q-~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~-lG~~~~A~~aF  126 (157)
T PRK15363         49 KEFAGAARLFQLLTIYDAWSFDYWFRLGECCQ-AQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA-CDNVCYAIKAL  126 (157)
T ss_pred             CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH-cCCHHHHHHHH
Confidence            68889999999999999999999999988775 67889999999999999999999999998888876 78899999999


Q ss_pred             HHHHHhCC
Q 024536          214 DRAVHSAP  221 (266)
Q Consensus       214 ekAL~l~P  221 (266)
                      +.||...-
T Consensus       127 ~~Ai~~~~  134 (157)
T PRK15363        127 KAVVRICG  134 (157)
T ss_pred             HHHHHHhc
Confidence            99988873

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.29  E-value=2.6e-11  Score=129.86  Aligned_cols=114  Identities=18%  Similarity=0.232  Sum_probs=102.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-------------
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIW-------------  200 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~-------------  200 (266)
                      +++++|+.+|+++++++|+++.++.++|.++. ..|++++|+++|++|++++|+++.++..++.++.             
T Consensus       365 g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~-~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~  443 (1157)
T PRK11447        365 NNLAQAERLYQQARQVDNTDSYAVLGLGDVAM-ARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIAS  443 (1157)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence            68999999999999999999999999999886 6899999999999999999999988877765431             


Q ss_pred             ----------------------------HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccccc
Q 024536          201 ----------------------------INHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDD  248 (266)
Q Consensus       201 ----------------------------~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~  248 (266)
                                                  ...|++++|+.+|++|++++|+++.++..+|.+++..|++++|++.-+
T Consensus       444 l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~  519 (1157)
T PRK11447        444 LSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMR  519 (1157)
T ss_pred             CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence                                        126899999999999999999999999999999999999999996543

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.29  E-value=3.4e-11  Score=122.33  Aligned_cols=107  Identities=15%  Similarity=0.121  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024536          138 SMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAV  217 (266)
Q Consensus       138 eA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL  217 (266)
                      +|+.+|+++++++|+++.++.++|.++. ..|++++|+.+|++|+.++|+++.++.++|.++.. .|++++|+..|++++
T Consensus       268 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~-~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~-~G~~~eA~~~l~~al  345 (656)
T PRK15174        268 QAAEHWRHALQFNSDNVRIVTLYADALI-RTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQ-VGQYTAASDEFVQLA  345 (656)
T ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHH
Confidence            5999999999999999999999999886 58999999999999999999999999999998876 899999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536          218 HSAPDDCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       218 ~l~P~da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      ..+|+++.++..+|.++...|+.++|++.
T Consensus       346 ~~~P~~~~~~~~~a~al~~~G~~deA~~~  374 (656)
T PRK15174        346 REKGVTSKWNRYAAAALLQAGKTSEAESV  374 (656)
T ss_pred             HhCccchHHHHHHHHHHHHCCCHHHHHHH
Confidence            99999988888889999999999999964

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.29  E-value=1.7e-11  Score=88.01  Aligned_cols=68  Identities=25%  Similarity=0.302  Sum_probs=63.5

Q ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 024536          152 EDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHK-DAPRAKSYFDRAVHSAP  221 (266)
Q Consensus       152 ~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~g-d~deAi~~~ekAL~l~P  221 (266)
                      +++.+|.++|..+. ..+++++|+.+|++||+++|+++.+|+++|.+++. .+ ++++|+.+|++|++++|
T Consensus         1 e~a~~~~~~g~~~~-~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~-~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    1 ENAEAWYNLGQIYF-QQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMK-LGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             TSHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHcCc
Confidence            46889999999887 58999999999999999999999999999999877 77 79999999999999998

...

>PRK11906 transcriptional regulator; Provisional

Probab=99.26  E-value=2.9e-11  Score=117.17  Aligned_cols=125  Identities=12%  Similarity=0.013  Sum_probs=110.2

Q ss_pred             CCCCCHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 024536          131 DSGKESESMDVYYQEMI---KAYPEDALVLANYAKFLKEI--------RGDFVKAEEYCGRAILAKPGDGNVLSMYGDLI  199 (266)
Q Consensus       131 ~~~~~~eeA~~~y~rAL---el~P~~~~al~nlA~~L~~~--------~gd~e~A~~~~erAL~ldP~da~al~nla~ll  199 (266)
                      +++...++|..+|.+|+   +++|+++.+|..+|.+....        ..+..+|.++.++|++++|+|+.++..+|.++
T Consensus       269 ~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~  348 (458)
T PRK11906        269 FTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLIT  348 (458)
T ss_pred             cCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            35578899999999999   99999999999888765321        23567899999999999999999999999988


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccccccccccCCCC
Q 024536          200 WINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDDQETCASQP  256 (266)
Q Consensus       200 ~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~~~~~~~~~  256 (266)
                      +. .++++.|+..|+||+.++|+.+.+++.+|+++...|+.++|.++-+..-.++|.
T Consensus       349 ~~-~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~  404 (458)
T PRK11906        349 GL-SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPR  404 (458)
T ss_pred             Hh-hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch
Confidence            87 678999999999999999999999999999999999999999887776666664

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.25  E-value=5.3e-11  Score=127.59  Aligned_cols=114  Identities=16%  Similarity=0.171  Sum_probs=100.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH--------------HHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNV--------------LSMYGDLI  199 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~a--------------l~nla~ll  199 (266)
                      +++++|+.+|+++++++|+++.++..+|.++. ..|++++|+.+|++|++++|++...              +...|.++
T Consensus       283 g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~-~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~  361 (1157)
T PRK11447        283 GQGGKAIPELQQAVRANPKDSEALGALGQAYS-QQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAA  361 (1157)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHH
Confidence            68999999999999999999999999999876 5899999999999999999987532              12335555


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccccccc
Q 024536          200 WINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDDQ  249 (266)
Q Consensus       200 ~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~~  249 (266)
                      .. .|++++|+.+|++|++++|+++.++..+|.++...|++++|++.-+.
T Consensus       362 ~~-~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~  410 (1157)
T PRK11447        362 LK-ANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQ  410 (1157)
T ss_pred             HH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            55 79999999999999999999999999999999999999999965443

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.23  E-value=5.5e-11  Score=100.89  Aligned_cols=99  Identities=13%  Similarity=-0.023  Sum_probs=90.2

Q ss_pred             HHHHHC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 024536          145 EMIKAY-PEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (266)
Q Consensus       145 rALel~-P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~d  223 (266)
                      -...+. ++.-+.++.||..++ ..|++++|++.|+-+..+||.++..|++||.++.. +|++++|+..|.+|+.++|+|
T Consensus        25 ~l~~~~~~~~l~~lY~~A~~ly-~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~-~g~~~~AI~aY~~A~~L~~dd  102 (157)
T PRK15363         25 MLLDDDVTQPLNTLYRYAMQLM-EVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQA-QKHWGEAIYAYGRAAQIKIDA  102 (157)
T ss_pred             HHHCCChHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCCC
Confidence            344556 677788899998887 58999999999999999999999999999988855 899999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCcccccc
Q 024536          224 CHVLASYARFLWDAGEEEDDDD  245 (266)
Q Consensus       224 a~a~~~lA~ll~~~G~~~eA~~  245 (266)
                      ++++.++|.+++..|+.+.|.+
T Consensus       103 p~~~~~ag~c~L~lG~~~~A~~  124 (157)
T PRK15363        103 PQAPWAAAECYLACDNVCYAIK  124 (157)
T ss_pred             chHHHHHHHHHHHcCCHHHHHH
Confidence            9999999999999999999984

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.20  E-value=1.8e-10  Score=114.90  Aligned_cols=114  Identities=22%  Similarity=0.256  Sum_probs=99.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+..++++++.+|+++.+++++|.++. ..|++++|+.+|+++++.+|+++.++.+++.++.. .++ .+|+.++
T Consensus       750 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-~~~-~~A~~~~  826 (899)
T TIGR02917       750 GNTAEAVKTLEAWLKTHPNDAVLRTALAELYL-AQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLE-LKD-PRALEYA  826 (899)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCc-HHHHHHH
Confidence            57888888999999999999999999998775 57999999999999999999999999999988866 677 8899999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCccccccccccc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDDQE  250 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~~~  250 (266)
                      ++++.+.|+++.++..+|.++...|++++|++.-+..
T Consensus       827 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a  863 (899)
T TIGR02917       827 EKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKA  863 (899)
T ss_pred             HHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            9999999999999999999999999999998654433

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.18  E-value=6.4e-10  Score=86.01  Aligned_cols=93  Identities=14%  Similarity=0.161  Sum_probs=82.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHH
Q 024536          134 KESESMDVYYQEMIKAYPED---ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD---GNVLSMYGDLIWINHKDAP  207 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~---~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d---a~al~nla~ll~~~~gd~d  207 (266)
                      +++++|+.+|++++..+|++   +.+++.+|.++. ..+++++|..+|++++..+|++   +.++..+|.++.. .++++
T Consensus        16 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~   93 (119)
T TIGR02795        16 GDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYY-AQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQE-LGDKE   93 (119)
T ss_pred             CCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHH-hCChH
Confidence            68999999999999999987   578889998876 5799999999999999999886   6788899988876 78999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHH
Q 024536          208 RAKSYFDRAVHSAPDDCHVLA  228 (266)
Q Consensus       208 eAi~~~ekAL~l~P~da~a~~  228 (266)
                      +|+.+|+++++..|++..+..
T Consensus        94 ~A~~~~~~~~~~~p~~~~~~~  114 (119)
T TIGR02795        94 KAKATLQQVIKRYPGSSAAKL  114 (119)
T ss_pred             HHHHHHHHHHHHCcCChhHHH
Confidence            999999999999999887653

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.17  E-value=4.2e-10  Score=116.09  Aligned_cols=110  Identities=13%  Similarity=0.066  Sum_probs=101.8

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+.+|+++++++|+++.++..++.++. ..+++++|+.+++++++.+|+++. +..+|.++.. .|++++|+.+|
T Consensus        63 g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~-~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~-~g~~~~Al~~l  139 (765)
T PRK10049         63 KQWQNSLTLWQKALSLEPQNDDYQRGLILTLA-DAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKR-AGRHWDELRAM  139 (765)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH-CCCHHHHHHHH
Confidence            68899999999999999999999999998776 589999999999999999999999 9999988866 89999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      +++++++|+++.++..++.++...++.++|++.
T Consensus       140 ~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~  172 (765)
T PRK10049        140 TQALPRAPQTQQYPTEYVQALRNNRLSAPALGA  172 (765)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHH
Confidence            999999999999999999999998888887743

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.17  E-value=3.8e-10  Score=79.95  Aligned_cols=86  Identities=17%  Similarity=0.228  Sum_probs=52.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+.+|+++++..|.++.++..+|.++. ..+++++|..+|++++...|.+..++..++.++.. .+++++|..++
T Consensus        14 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~   91 (100)
T cd00189          14 GDYDEALEYYEKALELDPDNADAYYNLAAAYY-KLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK-LGKYEEALEAY   91 (100)
T ss_pred             hcHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH-HHhHHHHHHHH
Confidence            45566666666666666666666666665554 34566666666666666666666666666655544 45666666666


Q ss_pred             HHHHHhCC
Q 024536          214 DRAVHSAP  221 (266)
Q Consensus       214 ekAL~l~P  221 (266)
                      ++++...|
T Consensus        92 ~~~~~~~~   99 (100)
T cd00189          92 EKALELDP   99 (100)
T ss_pred             HHHHccCC
Confidence            66666555

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.15  E-value=1.6e-10  Score=82.19  Aligned_cols=64  Identities=22%  Similarity=0.395  Sum_probs=57.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 024536          159 NYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDC  224 (266)
Q Consensus       159 nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da  224 (266)
                      .+|..++ ..|++++|+.+|+++++.+|+++.+++.+|.+++. +|++++|+.+|+++++++|++|
T Consensus         2 ~~a~~~~-~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALY-QQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQ-QGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHH-HCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHH-HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCCC
Confidence            4666666 58999999999999999999999999999999986 8999999999999999999986

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.14  E-value=5.8e-10  Score=97.73  Aligned_cols=113  Identities=17%  Similarity=0.160  Sum_probs=98.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHH-----
Q 024536          134 KESESMDVYYQEMIKAYPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN---VLSMYGDLIWIN-----  202 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~---~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~---al~nla~ll~~~-----  202 (266)
                      +++++|+..|++++..+|+++   .+++++|.++. ..+++++|...|+++++..|+++.   +++.+|.++...     
T Consensus        47 ~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~  125 (235)
T TIGR03302        47 GDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYY-KSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVD  125 (235)
T ss_pred             CCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhccccc
Confidence            689999999999999999987   58899998876 589999999999999999999887   688889888652     


Q ss_pred             --cCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCcccccccc
Q 024536          203 --HKDAPRAKSYFDRAVHSAPDDCHVL-----------------ASYARFLWDAGEEEDDDDGD  247 (266)
Q Consensus       203 --~gd~deAi~~~ekAL~l~P~da~a~-----------------~~lA~ll~~~G~~~eA~~~~  247 (266)
                        .+++++|+..|++++..+|++..++                 ..+|.+++..|++++|++.-
T Consensus       126 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~  189 (235)
T TIGR03302       126 RDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRF  189 (235)
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence              1689999999999999999987543                 35688899999999999543

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.14  E-value=4.8e-10  Score=104.48  Aligned_cols=113  Identities=15%  Similarity=0.139  Sum_probs=88.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCCHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD-GNVLSMYGDLIWINHKDAPRAKSY  212 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d-a~al~nla~ll~~~~gd~deAi~~  212 (266)
                      +++++|+.+|+++++.+|++..+++.+|.++. ..|++++|..+|++++..+|.+ ..++..++.++.. .|++++|+.+
T Consensus       194 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~-~g~~~~A~~~  271 (389)
T PRK11788        194 GDLDAARALLKKALAADPQCVRASILLGDLAL-AQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA-LGDEAEGLEF  271 (389)
T ss_pred             CCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH-cCCHHHHHHH
Confidence            57888888888888888888888888887765 4788888888888888888876 3556677777665 6888888888


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCcccccccccc
Q 024536          213 FDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDDQ  249 (266)
Q Consensus       213 ~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~~  249 (266)
                      +++++...|+...+ ..++.++...|++++|++.-++
T Consensus       272 l~~~~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l~~  307 (389)
T PRK11788        272 LRRALEEYPGADLL-LALAQLLEEQEGPEAAQALLRE  307 (389)
T ss_pred             HHHHHHhCCCchHH-HHHHHHHHHhCCHHHHHHHHHH
Confidence            88888888876544 7788888888888888865433

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.12  E-value=5.5e-10  Score=97.89  Aligned_cols=114  Identities=13%  Similarity=0.019  Sum_probs=96.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCCCCHHHH-----------
Q 024536          134 KESESMDVYYQEMIKAYPEDAL---VLANYAKFLKEI-------RGDFVKAEEYCGRAILAKPGDGNVL-----------  192 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~---al~nlA~~L~~~-------~gd~e~A~~~~erAL~ldP~da~al-----------  192 (266)
                      +++++|+..|+++++.+|+++.   +++.+|.++...       .+++++|.+.|++++..+|++..++           
T Consensus        84 ~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~  163 (235)
T TIGR03302        84 GDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN  163 (235)
T ss_pred             CCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH
Confidence            6899999999999999999886   688888877532       2678999999999999999997653           


Q ss_pred             ------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCccccccccc
Q 024536          193 ------SMYGDLIWINHKDAPRAKSYFDRAVHSAPDD---CHVLASYARFLWDAGEEEDDDDGDD  248 (266)
Q Consensus       193 ------~nla~ll~~~~gd~deAi~~~ekAL~l~P~d---a~a~~~lA~ll~~~G~~~eA~~~~~  248 (266)
                            ..+|.+++. +|++++|+..|++++...|++   +.++..++.++...|++++|++..+
T Consensus       164 ~~~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~  227 (235)
T TIGR03302       164 RLAGKELYVARFYLK-RGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAA  227 (235)
T ss_pred             HHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence                  245666655 799999999999999997765   5799999999999999999996543

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.12  E-value=4.6e-10  Score=104.62  Aligned_cols=110  Identities=9%  Similarity=0.064  Sum_probs=62.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHHcCCHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN-----VLSMYGDLIWINHKDAPR  208 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~-----al~nla~ll~~~~gd~de  208 (266)
                      +++++|+.+|+++++.+|.+..++.+++.++. ..|++++|..+|++++..+|.+..     .+..+|.++.. .+++++
T Consensus       121 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~  198 (389)
T PRK11788        121 GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQ-QEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA-RGDLDA  198 (389)
T ss_pred             CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHH-HhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh-CCCHHH
Confidence            35566666666666666666666666665543 355666666666666655554422     23344444433 455666


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccc
Q 024536          209 AKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDD  245 (266)
Q Consensus       209 Ai~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~  245 (266)
                      |+.+|+++++.+|++..++..+|.++...|++++|++
T Consensus       199 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  235 (389)
T PRK11788        199 ARALLKKALAADPQCVRASILLGDLALAQGDYAAAIE  235 (389)
T ss_pred             HHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            6666666666666655555566666666666666554

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.11  E-value=9.2e-10  Score=101.45  Aligned_cols=122  Identities=12%  Similarity=0.102  Sum_probs=107.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc--CCHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINH--KDAPRAKS  211 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~--gd~deAi~  211 (266)
                      .+.++.+.-++..|+.||+|+.-|..||.++. ..+++..|...|.+|+++.|++++++..||.+++...  .+..+|..
T Consensus       136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym-~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~  214 (287)
T COG4235         136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYM-ALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARA  214 (287)
T ss_pred             ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHH-HhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence            56889999999999999999999999999886 6899999999999999999999999999999887653  35689999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccccccccccCCCC
Q 024536          212 YFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDDQETCASQP  256 (266)
Q Consensus       212 ~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~~~~~~~~~  256 (266)
                      +|++|+++||+|..++..||..+++.|++.+|+.--+.+-.+.|+
T Consensus       215 ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~  259 (287)
T COG4235         215 LLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA  259 (287)
T ss_pred             HHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999999999999999543333333343

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.11  E-value=1.4e-10  Score=114.15  Aligned_cols=111  Identities=17%  Similarity=0.214  Sum_probs=103.1

Q ss_pred             CCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYP--EDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS  211 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P--~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~  211 (266)
                      -.+..-.++|..|...+|  .+++++..||.+++ ..++|++|..||+.||..+|+|...|+.||..+.. ..+.++|+.
T Consensus       408 ~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~-ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN-~~~s~EAIs  485 (579)
T KOG1125|consen  408 SHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYN-LSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLAN-GNRSEEAIS  485 (579)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHh-cchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcC-CcccHHHHH
Confidence            456677789999999999  89999999998776 58999999999999999999999999999999877 678999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536          212 YFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       212 ~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      .|+||+.+.|...++++++|..+..+|.+.||+++
T Consensus       486 AY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~h  520 (579)
T KOG1125|consen  486 AYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKH  520 (579)
T ss_pred             HHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHH
Confidence            99999999999999999999999999999999964

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=6e-10  Score=107.77  Aligned_cols=110  Identities=15%  Similarity=0.171  Sum_probs=103.8

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      ++..+|+..|++|++++|.|-.+|+.+|.++. .++...=|+-||++|+.+.|+|+..|..+|.+|.. .++.++|+.+|
T Consensus       378 KNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYe-im~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~k-l~~~~eAiKCy  455 (559)
T KOG1155|consen  378 KNTHAAIESYRRAVDINPRDYRAWYGLGQAYE-IMKMHFYALYYFQKALELKPNDSRLWVALGECYEK-LNRLEEAIKCY  455 (559)
T ss_pred             cccHHHHHHHHHHHhcCchhHHHHhhhhHHHH-HhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHH-hccHHHHHHHH
Confidence            77899999999999999999999999999874 78888999999999999999999999999999866 78999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCcccccc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDD  245 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~  245 (266)
                      ++|+...-.+..++..+|.++-+.++..+|.+
T Consensus       456 krai~~~dte~~~l~~LakLye~l~d~~eAa~  487 (559)
T KOG1155|consen  456 KRAILLGDTEGSALVRLAKLYEELKDLNEAAQ  487 (559)
T ss_pred             HHHHhccccchHHHHHHHHHHHHHHhHHHHHH
Confidence            99999999888999999999999999999984

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.09  E-value=1e-09  Score=113.31  Aligned_cols=116  Identities=15%  Similarity=0.016  Sum_probs=106.8

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      ++.++|++.|++++..+|..+.++.++|.++. ..+++++|..+|+++|+++|+++.++..++.++.. .+++++|+.++
T Consensus        29 g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~-~g~~~eA~~~l  106 (765)
T PRK10049         29 GQDAEVITVYNRYRVHMQLPARGYAAVAVAYR-NLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLAD-AGQYDEALVKA  106 (765)
T ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence            78899999999999999999999999999886 68999999999999999999999999999988876 89999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCccccccccccccc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDDQETC  252 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~~~~~  252 (266)
                      +++++.+|+++. +..+|.++..+|+.++|++.-+....
T Consensus       107 ~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~  144 (765)
T PRK10049        107 KQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALP  144 (765)
T ss_pred             HHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            999999999999 99999999999999999965443333

>PLN02789 farnesyltranstransferase

Probab=99.09  E-value=9.7e-10  Score=103.09  Aligned_cols=108  Identities=13%  Similarity=0.072  Sum_probs=69.4

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--HHHHHH
Q 024536          135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRG-DFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKD--APRAKS  211 (266)
Q Consensus       135 ~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~g-d~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd--~deAi~  211 (266)
                      ..++|+.++.++|+++|++..+|.+.+.++.. .+ ++++|+.++++++..+|.+..+|++.+.++.. .++  +++++.
T Consensus        52 ~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~-L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~-l~~~~~~~el~  129 (320)
T PLN02789         52 RSPRALDLTADVIRLNPGNYTVWHFRRLCLEA-LDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEK-LGPDAANKELE  129 (320)
T ss_pred             CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHH-cchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHH-cCchhhHHHHH
Confidence            45667777777777777777777666666643 33 45666666666666666666666666665544 333  255666


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536          212 YFDRAVHSAPDDCHVLASYARFLWDAGEEEDDD  244 (266)
Q Consensus       212 ~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~  244 (266)
                      +++++++++|.|..+|...++++...+++++|+
T Consensus       130 ~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL  162 (320)
T PLN02789        130 FTRKILSLDAKNYHAWSHRQWVLRTLGGWEDEL  162 (320)
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHH
Confidence            666666666666666666666666666666665

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.08  E-value=6.2e-10  Score=78.81  Aligned_cols=90  Identities=17%  Similarity=0.254  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 024536          156 VLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLW  235 (266)
Q Consensus       156 al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~  235 (266)
                      +++++|.++. ..+++++|..++++++...|.+..++..+|.++.. .+++++|+.+|++++.+.|.+..++..++.++.
T Consensus         2 ~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (100)
T cd00189           2 ALLNLGNLYY-KLGDYDEALEYYEKALELDPDNADAYYNLAAAYYK-LGKYEEALEDYEKALELDPDNAKAYYNLGLAYY   79 (100)
T ss_pred             HHHHHHHHHH-HHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence            5678888776 47999999999999999999999999999998877 689999999999999999999999999999999


Q ss_pred             HcCCcccccccc
Q 024536          236 DAGEEEDDDDGD  247 (266)
Q Consensus       236 ~~G~~~eA~~~~  247 (266)
                      ..++.++|.+..
T Consensus        80 ~~~~~~~a~~~~   91 (100)
T cd00189          80 KLGKYEEALEAY   91 (100)
T ss_pred             HHHhHHHHHHHH
Confidence            999999988543

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.08  E-value=3.8e-09  Score=88.88  Aligned_cols=90  Identities=21%  Similarity=0.245  Sum_probs=66.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH------HcC
Q 024536          134 KESESMDVYYQEMIKAYPED---ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI------NHK  204 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~---~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~------~~g  204 (266)
                      +++++|+.+|++|+.+.|+.   +.+|.++|.++. ..|++++|+.+|++|+.++|.....+.++|.++..      ..|
T Consensus        49 g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~-~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g  127 (168)
T CHL00033         49 GEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT-SNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQG  127 (168)
T ss_pred             CCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcc
Confidence            57788888888888887663   357888887665 57888888888888888888888888888877761      145


Q ss_pred             CHH-------HHHHHHHHHHHhCCCCH
Q 024536          205 DAP-------RAKSYFDRAVHSAPDDC  224 (266)
Q Consensus       205 d~d-------eAi~~~ekAL~l~P~da  224 (266)
                      +++       +|+.+|++++..+|++.
T Consensus       128 ~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033        128 DSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            544       66667777777887654

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.07  E-value=2.6e-10  Score=110.82  Aligned_cols=114  Identities=15%  Similarity=0.185  Sum_probs=76.8

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH------------
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI------------  201 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~------------  201 (266)
                      +++++|++.|++|++++|+++.++..++.++|. ++.+++++..|+.+++.-|+.++++..+|.++..            
T Consensus       408 ~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr-~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD  486 (606)
T KOG0547|consen  408 QQYEEAIADFQKAISLDPENAYAYIQLCCALYR-QHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYD  486 (606)
T ss_pred             HHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHH
Confidence            889999999999999999999999999887773 4455555555555555555555555555555444            


Q ss_pred             ----------------------------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccccc
Q 024536          202 ----------------------------NHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDD  248 (266)
Q Consensus       202 ----------------------------~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~  248 (266)
                                                  +++|+.+|+.++.+|+++||.--.++..+|.+..++|+.++|++.+|
T Consensus       487 ~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFE  561 (606)
T KOG0547|consen  487 KAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFE  561 (606)
T ss_pred             HHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence                                        44555555555555555555555566667777777777777765443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.06  E-value=2.5e-10  Score=103.21  Aligned_cols=113  Identities=19%  Similarity=0.185  Sum_probs=93.8

Q ss_pred             CCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024536          134 KESESMDVYYQEMIKAY--PEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS  211 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~--P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~  211 (266)
                      ++++++...+.++....  |.++.+|..+|.++. ..|+.++|+++|++||+++|+|+.++..+++++.. .|++++|..
T Consensus       124 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~-~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~-~~~~~~~~~  201 (280)
T PF13429_consen  124 GDYDEAEELLEKLEELPAAPDSARFWLALAEIYE-QLGDPDKALRDYRKALELDPDDPDARNALAWLLID-MGDYDEARE  201 (280)
T ss_dssp             T-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHH-HCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCT-TCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-CCChHHHHH
Confidence            68899999999988766  788899999998775 68999999999999999999999999999988876 789999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccccc
Q 024536          212 YFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDD  248 (266)
Q Consensus       212 ~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~  248 (266)
                      .+++.....|.++.++..+|.++...|+.++|.+.-+
T Consensus       202 ~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~  238 (280)
T PF13429_consen  202 ALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLE  238 (280)
T ss_dssp             HHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHH
T ss_pred             HHHHHHHHCcCHHHHHHHHHHHhcccccccccccccc
Confidence            9999999999999999999999999999999996543

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.06  E-value=1e-09  Score=108.95  Aligned_cols=125  Identities=8%  Similarity=-0.012  Sum_probs=101.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Q 024536          129 DGDSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEI-------RGDFVKAEEYCGRAILA--KPGDGNVLSMYGDLI  199 (266)
Q Consensus       129 ~~~~~~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~-------~gd~e~A~~~~erAL~l--dP~da~al~nla~ll  199 (266)
                      +....+++.+|+.+|++|++++|+++.+|..++.++...       ..++++|.+..++++.+  +|.++.+|..+|...
T Consensus       351 ~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~  430 (517)
T PRK10153        351 NSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQA  430 (517)
T ss_pred             hcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHH
Confidence            334457799999999999999999999999887654321       12356778888887775  888899998888776


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccccccccccCCC
Q 024536          200 WINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDDQETCASQ  255 (266)
Q Consensus       200 ~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~~~~~~~~  255 (266)
                      .. +|++++|+.+|++|++++| ++.++..+|.++...|+.++|++.-+....+.|
T Consensus       431 ~~-~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P  484 (517)
T PRK10153        431 LV-KGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP  484 (517)
T ss_pred             Hh-cCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            54 8999999999999999999 588999999999999999999976554444333

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.05  E-value=4.5e-10  Score=109.23  Aligned_cols=113  Identities=16%  Similarity=0.142  Sum_probs=103.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      .+.++-.+.|.+|..+||+|+.+|++.|.+.. ..+++++|.+-|++|+.++|++..++..++.++++ ++++++++..|
T Consensus       374 ~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~f-lL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr-~~k~~~~m~~F  451 (606)
T KOG0547|consen  374 NQSEKMWKDFNKAEDLDPENPDVYYHRGQMRF-LLQQYEEAIADFQKAISLDPENAYAYIQLCCALYR-QHKIAESMKTF  451 (606)
T ss_pred             hccHHHHHHHHHHHhcCCCCCchhHhHHHHHH-HHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            56678888999999999999999999999876 57889999999999999999999999999998888 67899999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCccccccccc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDD  248 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~  248 (266)
                      +.+++.-|+-++++..+|.+|.++++++.|+++-+
T Consensus       452 ee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD  486 (606)
T KOG0547|consen  452 EEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYD  486 (606)
T ss_pred             HHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHH
Confidence            99999999999999999999999999999996543

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.04  E-value=5.2e-09  Score=88.56  Aligned_cols=88  Identities=22%  Similarity=0.303  Sum_probs=53.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-----
Q 024536          134 KESESMDVYYQEMIKAYPED---ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKD-----  205 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~---~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd-----  205 (266)
                      +++++|+.+|++++++.|+.   +.++.++|.++. ..|++++|+.+|++|+.++|+++.++.++|.++.. .++     
T Consensus        49 g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~a~  126 (172)
T PRK02603         49 GEYAEALENYEEALKLEEDPNDRSYILYNMGIIYA-SNGEHDKALEYYHQALELNPKQPSALNNIAVIYHK-RGEKAEEA  126 (172)
T ss_pred             CCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-cCChHhHh
Confidence            45666666666666665543   346666666554 35666666666666666666666666666665544 343     


Q ss_pred             ---------HHHHHHHHHHHHHhCCCC
Q 024536          206 ---------APRAKSYFDRAVHSAPDD  223 (266)
Q Consensus       206 ---------~deAi~~~ekAL~l~P~d  223 (266)
                               +++|+.++++++.++|++
T Consensus       127 ~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        127 GDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             hCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence                     455666666666666665

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.04  E-value=1.5e-09  Score=111.08  Aligned_cols=113  Identities=9%  Similarity=0.038  Sum_probs=101.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +...+++.-.+...+-.|+++.++.+||.+.. ..|.+++|+..++++++++|++..++.+++.++.+ ++++++|+..+
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~-~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~-~~~~eeA~~~~  143 (694)
T PRK15179         66 HKPAAALPELLDYVRRYPHTELFQVLVARALE-AAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKR-QQGIEAGRAEI  143 (694)
T ss_pred             cchHhhHHHHHHHHHhccccHHHHHHHHHHHH-HcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH-hccHHHHHHHH
Confidence            44455555556666778999999999999886 68999999999999999999999999999999977 78999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCccccccccc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDD  248 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~  248 (266)
                      ++++..+|+++.++..+|.++.++|++++|++..+
T Consensus       144 ~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~  178 (694)
T PRK15179        144 ELYFSGGSSSAREILLEAKSWDEIGQSEQADACFE  178 (694)
T ss_pred             HHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHH
Confidence            99999999999999999999999999999997543

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.03  E-value=1.2e-09  Score=103.49  Aligned_cols=85  Identities=14%  Similarity=0.069  Sum_probs=78.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 024536          160 YAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGE  239 (266)
Q Consensus       160 lA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~  239 (266)
                      .|..++ ..+++++|+.+|++||+++|+++.+|+++|.++.. .|++++|+.++++|+.++|+++.+++.+|.++...|+
T Consensus         8 ~a~~a~-~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~-~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~   85 (356)
T PLN03088          8 KAKEAF-VDDDFALAVDLYTQAIDLDPNNAELYADRAQANIK-LGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE   85 (356)
T ss_pred             HHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence            344444 47999999999999999999999999999999876 7999999999999999999999999999999999999


Q ss_pred             ccccccc
Q 024536          240 EEDDDDG  246 (266)
Q Consensus       240 ~~eA~~~  246 (266)
                      +++|++.
T Consensus        86 ~~eA~~~   92 (356)
T PLN03088         86 YQTAKAA   92 (356)
T ss_pred             HHHHHHH
Confidence            9999954

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.01  E-value=2.5e-09  Score=96.88  Aligned_cols=109  Identities=22%  Similarity=0.241  Sum_probs=100.6

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 024536          135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFD  214 (266)
Q Consensus       135 ~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~e  214 (266)
                      +-+.+..+..+++..+|.+..++..+|..+. ..|++..|+..+++|..++|+|+++|..+|.+|.+ .|+++.|..-|.
T Consensus        81 ~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~-~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq-~Gr~~~Ar~ay~  158 (257)
T COG5010          81 DADSSLAVLQKSAIAYPKDRELLAAQGKNQI-RNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQ-LGRFDEARRAYR  158 (257)
T ss_pred             cccchHHHHhhhhccCcccHHHHHHHHHHHH-HhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHH-ccChhHHHHHHH
Confidence            4467777888889999999999988888775 57999999999999999999999999999998866 899999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCcccccc
Q 024536          215 RAVHSAPDDCHVLASYARFLWDAGEEEDDDD  245 (266)
Q Consensus       215 kAL~l~P~da~a~~~lA~ll~~~G~~~eA~~  245 (266)
                      ||+++.|+++.+..|+|..+.-.|++++|+.
T Consensus       159 qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~  189 (257)
T COG5010         159 QALELAPNEPSIANNLGMSLLLRGDLEDAET  189 (257)
T ss_pred             HHHHhccCCchhhhhHHHHHHHcCCHHHHHH
Confidence            9999999999999999999999999999984

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.00  E-value=3.1e-09  Score=82.11  Aligned_cols=100  Identities=16%  Similarity=0.118  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHH
Q 024536          154 ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD---GNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD---CHVL  227 (266)
Q Consensus       154 ~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d---a~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~d---a~a~  227 (266)
                      +.+++..|..+. ..+++++|..+|++++..+|++   +.+++.+|.++.. .+++++|+.+|++++...|++   +.++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~~   79 (119)
T TIGR02795         2 EEAYYDAALLVL-KAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA-QGKYADAAKAFLAVVKKYPKSPKAPDAL   79 (119)
T ss_pred             cHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHCCCCCcccHHH
Confidence            456788888776 5899999999999999999987   5788999999877 799999999999999999986   6789


Q ss_pred             HHHHHHHHHcCCcccccccccccccCCC
Q 024536          228 ASYARFLWDAGEEEDDDDGDDQETCASQ  255 (266)
Q Consensus       228 ~~lA~ll~~~G~~~eA~~~~~~~~~~~~  255 (266)
                      ..+|.++...++.++|++.-+..-...|
T Consensus        80 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p  107 (119)
T TIGR02795        80 LKLGMSLQELGDKEKAKATLQQVIKRYP  107 (119)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHHHCc
Confidence            9999999999999999966444333333

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.00  E-value=3.8e-09  Score=88.88  Aligned_cols=108  Identities=13%  Similarity=0.116  Sum_probs=90.5

Q ss_pred             CHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHH
Q 024536          135 ESESMDVYYQEMIKAYPED--ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD---GNVLSMYGDLIWINHKDAPRA  209 (266)
Q Consensus       135 ~~eeA~~~y~rALel~P~~--~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d---a~al~nla~ll~~~~gd~deA  209 (266)
                      .+..+...+.+.++.++.+  +.+|+++|.++. ..+++++|+.+|++|+.+.|++   +.++.++|.++.. .|++++|
T Consensus        14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~-~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~-~g~~~eA   91 (168)
T CHL00033         14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQ-SEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS-NGEHTKA   91 (168)
T ss_pred             ccccchhhhhHhccCCchhHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH-cCCHHHH
Confidence            4566677777776777777  567788888765 5899999999999999997763   4689999988876 8999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHH-------HcCCccccc
Q 024536          210 KSYFDRAVHSAPDDCHVLASYARFLW-------DAGEEEDDD  244 (266)
Q Consensus       210 i~~~ekAL~l~P~da~a~~~lA~ll~-------~~G~~~eA~  244 (266)
                      +.+|++|+.++|.+...+.+++.++.       ..|++++|.
T Consensus        92 ~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~  133 (168)
T CHL00033         92 LEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAE  133 (168)
T ss_pred             HHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHH
Confidence            99999999999999999999999999       666766554

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.97  E-value=1.5e-09  Score=106.92  Aligned_cols=111  Identities=14%  Similarity=0.037  Sum_probs=99.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      ++|++|+.+|+.||..+|+|..+|+.||-.|. .-.+.++|+..|.|||.+.|+...+++|+|+.+.. .|.|.+|+.+|
T Consensus       444 ~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLA-N~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mN-lG~ykEA~~hl  521 (579)
T KOG1125|consen  444 GEFDRAVDCFEAALQVKPNDYLLWNRLGATLA-NGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMN-LGAYKEAVKHL  521 (579)
T ss_pred             hHHHHHHHHHHHHHhcCCchHHHHHHhhHHhc-CCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhh-hhhHHHHHHHH
Confidence            79999999999999999999999999998875 45678999999999999999999999999999987 79999999999


Q ss_pred             HHHHHhCCCC----------HHHHHHHHHHHHHcCCccccccc
Q 024536          214 DRAVHSAPDD----------CHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       214 ekAL~l~P~d----------a~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      -.||.+.+..          -.+|..|=.++...++.|-+.+.
T Consensus       522 L~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a  564 (579)
T KOG1125|consen  522 LEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA  564 (579)
T ss_pred             HHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence            9999998861          24788888888888888855543

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.96  E-value=9.3e-09  Score=99.91  Aligned_cols=109  Identities=15%  Similarity=0.118  Sum_probs=103.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +.+++|+..++..++..|+|+.++-..+.++. ..++.++|.+.+++|+.++|+.+-.+.+||.+|.+ .|++.+|+.++
T Consensus       320 ~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~-~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~-~g~~~eai~~L  397 (484)
T COG4783         320 GQYDEALKLLQPLIAAQPDNPYYLELAGDILL-EANKAKEAIERLKKALALDPNSPLLQLNLAQALLK-GGKPQEAIRIL  397 (484)
T ss_pred             cccchHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHh-cCChHHHHHHH
Confidence            68899999999999999999999999999886 47999999999999999999999999999999987 79999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDD  244 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~  244 (266)
                      ++.+..+|+|+..|..||.+|-.+|+-.+|.
T Consensus       398 ~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~  428 (484)
T COG4783         398 NRYLFNDPEDPNGWDLLAQAYAELGNRAEAL  428 (484)
T ss_pred             HHHhhcCCCCchHHHHHHHHHHHhCchHHHH
Confidence            9999999999999999999999999988776

>PLN02789 farnesyltranstransferase

Probab=98.95  E-value=1.3e-08  Score=95.60  Aligned_cols=102  Identities=7%  Similarity=0.002  Sum_probs=93.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGD--FVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS  211 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd--~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~  211 (266)
                      ..+++|+.++.++++.+|++..+|++.+.++. ..++  ++++..+++++|+++|.|..+|.+.++++.. .+++++|+.
T Consensus        86 ~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~-~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~-l~~~~eeL~  163 (320)
T PLN02789         86 ADLEEELDFAEDVAEDNPKNYQIWHHRRWLAE-KLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRT-LGGWEDELE  163 (320)
T ss_pred             hhHHHHHHHHHHHHHHCCcchHHhHHHHHHHH-HcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-hhhHHHHHH
Confidence            36799999999999999999999999998775 4555  3788999999999999999999999999876 689999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHc
Q 024536          212 YFDRAVHSAPDDCHVLASYARFLWDA  237 (266)
Q Consensus       212 ~~ekAL~l~P~da~a~~~lA~ll~~~  237 (266)
                      +++++|+++|.|..+|+..+.++...
T Consensus       164 ~~~~~I~~d~~N~sAW~~R~~vl~~~  189 (320)
T PLN02789        164 YCHQLLEEDVRNNSAWNQRYFVITRS  189 (320)
T ss_pred             HHHHHHHHCCCchhHHHHHHHHHHhc
Confidence            99999999999999999999888776

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.95  E-value=8.6e-09  Score=89.27  Aligned_cols=97  Identities=21%  Similarity=0.172  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc---
Q 024536          136 SESMDVYYQEMIKAYPEDALVLANYAKFLKEI---------RGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINH---  203 (266)
Q Consensus       136 ~eeA~~~y~rALel~P~~~~al~nlA~~L~~~---------~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~---  203 (266)
                      ++.|.+.|+.++..||.++++++++|.+|.+.         ..-+++|+.-|++||.++|+...+++++|.++..+.   
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            67899999999999999999999999887542         124688999999999999999999999999886421   


Q ss_pred             -------CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 024536          204 -------KDAPRAKSYFDRAVHSAPDDCHVLASYAR  232 (266)
Q Consensus       204 -------gd~deAi~~~ekAL~l~P~da~a~~~lA~  232 (266)
                             .-|++|..||++|+..+|++..++..|-.
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~  122 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEM  122 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence                   23899999999999999999888766654

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.92  E-value=3.4e-09  Score=79.46  Aligned_cols=80  Identities=16%  Similarity=0.255  Sum_probs=63.4

Q ss_pred             CCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPE--DALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS  211 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~--~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~  211 (266)
                      ++++.|+.+|+++++.+|.  +...++++|.+++ ..|++++|..++++ +..+|.+...++.+|.+++. .+++++|+.
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~-~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~-l~~y~eAi~   79 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYF-QQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLK-LGKYEEAIK   79 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHH-HTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH-HCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHH-hCCHHHHHH
Confidence            5788888888888888885  4567777888877 47888888888888 77888888888888888876 688888888


Q ss_pred             HHHHH
Q 024536          212 YFDRA  216 (266)
Q Consensus       212 ~~ekA  216 (266)
                      +|++|
T Consensus        80 ~l~~~   84 (84)
T PF12895_consen   80 ALEKA   84 (84)
T ss_dssp             HHHHH
T ss_pred             HHhcC
Confidence            88875

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.91  E-value=2.5e-08  Score=84.38  Aligned_cols=99  Identities=16%  Similarity=0.234  Sum_probs=82.4

Q ss_pred             HHHHHHHHCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024536          142 YYQEMIKAYP--EDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD---GNVLSMYGDLIWINHKDAPRAKSYFDRA  216 (266)
Q Consensus       142 ~y~rALel~P--~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d---a~al~nla~ll~~~~gd~deAi~~~ekA  216 (266)
                      .+.+.+..++  ..+.+++++|..+. ..|++++|..+|++|+.+.|+.   +.++.++|.++.. .|++++|+.+|++|
T Consensus        21 ~~~~~~~~~~~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a   98 (172)
T PRK02603         21 LILKILPINKKAKEAFVYYRDGMSAQ-ADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYAS-NGEHDKALEYYHQA   98 (172)
T ss_pred             HHHHHcccccHhhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHH
Confidence            3344444443  45567888998775 6899999999999999988764   4689999998876 89999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCCccc
Q 024536          217 VHSAPDDCHVLASYARFLWDAGEEED  242 (266)
Q Consensus       217 L~l~P~da~a~~~lA~ll~~~G~~~e  242 (266)
                      +.+.|+++.++..+|.++...++...
T Consensus        99 l~~~p~~~~~~~~lg~~~~~~g~~~~  124 (172)
T PRK02603         99 LELNPKQPSALNNIAVIYHKRGEKAE  124 (172)
T ss_pred             HHhCcccHHHHHHHHHHHHHcCChHh
Confidence            99999999999999999999988433

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.90  E-value=9.4e-09  Score=94.80  Aligned_cols=115  Identities=17%  Similarity=0.183  Sum_probs=82.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHH-------------------------------------HHHHHHHHHcCCHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLA-------------------------------------NYAKFLKEIRGDFVKAEE  176 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~-------------------------------------nlA~~L~~~~gd~e~A~~  176 (266)
                      +++++|.++++++++.+|++..++.                                     ++|.++. ..|++++|+.
T Consensus        57 g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~-~~G~~~~A~~  135 (355)
T cd05804          57 GDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLE-EAGQYDRAEE  135 (355)
T ss_pred             CCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHH-HcCCHHHHHH
Confidence            4677888888888888888776544                                     2222222 4677888888


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCccccccccccc
Q 024536          177 YCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCH----VLASYARFLWDAGEEEDDDDGDDQE  250 (266)
Q Consensus       177 ~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~----a~~~lA~ll~~~G~~~eA~~~~~~~  250 (266)
                      .++++++++|+++.++..+|.++++ .|++++|+.++++++...|.++.    .+..++.++...|++++|++.-+..
T Consensus       136 ~~~~al~~~p~~~~~~~~la~i~~~-~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~  212 (355)
T cd05804         136 AARRALELNPDDAWAVHAVAHVLEM-QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTH  212 (355)
T ss_pred             HHHHHHhhCCCCcHHHHHHHHHHHH-cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            8888888888888888888877766 67888888888888887764332    3446788888888888888765543

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.89  E-value=9.8e-09  Score=94.70  Aligned_cols=87  Identities=11%  Similarity=0.114  Sum_probs=77.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHcCCHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN----VLSMYGDLIWINHKDAPRA  209 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~----al~nla~ll~~~~gd~deA  209 (266)
                      +++++|+..|+++++++|+++.++..+|.+++ ..|++++|+.++++++...|.++.    .+..++.++.. +|++++|
T Consensus       128 G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~-~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~-~G~~~~A  205 (355)
T cd05804         128 GQYDRAEEAARRALELNPDDAWAVHAVAHVLE-MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE-RGDYEAA  205 (355)
T ss_pred             CCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH-HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH-CCCHHHH
Confidence            78999999999999999999999999999887 489999999999999999885543    35578887765 8999999


Q ss_pred             HHHHHHHHHhCCC
Q 024536          210 KSYFDRAVHSAPD  222 (266)
Q Consensus       210 i~~~ekAL~l~P~  222 (266)
                      +.+|++++...|.
T Consensus       206 ~~~~~~~~~~~~~  218 (355)
T cd05804         206 LAIYDTHIAPSAE  218 (355)
T ss_pred             HHHHHHHhccccC
Confidence            9999999988883

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.89  E-value=6.1e-09  Score=102.64  Aligned_cols=111  Identities=17%  Similarity=0.219  Sum_probs=89.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----C---CHHHHHHHHHHHHHHcCCH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKP----G---DGNVLSMYGDLIWINHKDA  206 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP----~---da~al~nla~ll~~~~gd~  206 (266)
                      +.++-|+++|.+|+.+.|.+|.++..+|.+.+ ..+.|.+|..+|+.++..-+    .   ....+.|+|.++.. .+.+
T Consensus       394 ~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay-~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk-l~~~  471 (611)
T KOG1173|consen  394 NNLKLAEKFFKQALAIAPSDPLVLHELGVVAY-TYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK-LNKY  471 (611)
T ss_pred             ccHHHHHHHHHHHHhcCCCcchhhhhhhheee-hHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH-HhhH
Confidence            67788888888888888888888888887766 35778888888888884222    1   23447788887765 6789


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536          207 PRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       207 deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      ++|+.+|++||.+.|.++.++..+|.++..+|+++.|+++
T Consensus       472 ~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~  511 (611)
T KOG1173|consen  472 EEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDH  511 (611)
T ss_pred             HHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHH
Confidence            9999999999999999999999999999999999998864

>PRK11906 transcriptional regulator; Provisional

Probab=98.87  E-value=2.6e-08  Score=96.91  Aligned_cols=110  Identities=7%  Similarity=0.044  Sum_probs=93.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      .+..+|.++.++|++++|.|+.++..+|.++. ..++++.|...|++|+.++|+.+.+|+.+|+++.. .|+.++|++++
T Consensus       318 ~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~-~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~-~G~~~~a~~~i  395 (458)
T PRK11906        318 LAAQKALELLDYVSDITTVDGKILAIMGLITG-LSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFH-NEKIEEARICI  395 (458)
T ss_pred             HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-hhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            57789999999999999999999999998776 46889999999999999999999999999988765 89999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHH-HHHcCCcccccc
Q 024536          214 DRAVHSAPDDCHVLASYARF-LWDAGEEEDDDD  245 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~l-l~~~G~~~eA~~  245 (266)
                      ++|++++|.-..+-.---++ .+.-...++|+.
T Consensus       396 ~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~  428 (458)
T PRK11906        396 DKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIK  428 (458)
T ss_pred             HHHhccCchhhHHHHHHHHHHHHcCCchhhhHH
Confidence            99999999866543322233 445566777773

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.87  E-value=6.4e-09  Score=74.19  Aligned_cols=65  Identities=17%  Similarity=0.254  Sum_probs=54.4

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 024536          167 IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYAR  232 (266)
Q Consensus       167 ~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~  232 (266)
                      ..|++++|+.+|++++..+|++..++..+|.++.. .|++++|+.++++++..+|+++.++..++.
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLK-QGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHH-TT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            36888999999999999999999999999988877 788999999999999999988877766654

...

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.86  E-value=1.8e-08  Score=104.92  Aligned_cols=114  Identities=13%  Similarity=0.052  Sum_probs=93.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      ++++.|+..|+++++.+|+++.+...+..++. ..|++++|+.++++++.-+|.....+..+|.++.. +|++++|+++|
T Consensus        48 Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~-~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~-~gdyd~Aiely  125 (822)
T PRK14574         48 GDTAPVLDYLQEESKAGPLQSGQVDDWLQIAG-WAGRDQEVIDVYERYQSSMNISSRGLASAARAYRN-EKRWDQALALW  125 (822)
T ss_pred             CCHHHHHHHHHHHHhhCccchhhHHHHHHHHH-HcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            67899999999999999999654446665554 46999999999999994444455555555767755 79999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCcccccccccc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDDQ  249 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~~  249 (266)
                      +++++.+|+++.++..++.++.++++.++|++.-+.
T Consensus       126 ~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~  161 (822)
T PRK14574        126 QSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATE  161 (822)
T ss_pred             HHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence            999999999999999999999999999999965433

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.86  E-value=2e-08  Score=103.06  Aligned_cols=114  Identities=18%  Similarity=0.237  Sum_probs=105.8

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+..+.++|+++|.++.+|+.||.++. .+||.++|..++-.|-.++|.|.+.|..++....+ +|.+.+|+-||
T Consensus       153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyE-qrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~-~~~i~qA~~cy  230 (895)
T KOG2076|consen  153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYE-QRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ-LGNINQARYCY  230 (895)
T ss_pred             CCHHHHHHHHHHHHHhCccchhhHHHHHHHHH-HcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh-cccHHHHHHHH
Confidence            68999999999999999999999999999874 68999999999999999999999999999987755 89999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCcccccccccc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDDQ  249 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~~  249 (266)
                      .|||.++|.+-......+.+|.+.|+...|.+-..+
T Consensus       231 ~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~  266 (895)
T KOG2076|consen  231 SRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQ  266 (895)
T ss_pred             HHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence            999999999999999999999999999988854433

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.86  E-value=6.9e-08  Score=88.34  Aligned_cols=92  Identities=15%  Similarity=0.231  Sum_probs=82.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHH
Q 024536          134 KESESMDVYYQEMIKAYPED---ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD---GNVLSMYGDLIWINHKDAP  207 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~---~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d---a~al~nla~ll~~~~gd~d  207 (266)
                      +++++|+..|++.++..|++   +.+++.+|.+++ ..|++++|..+|++++...|++   +++++.+|.++.. .|+++
T Consensus       157 ~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~-~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~-~g~~~  234 (263)
T PRK10803        157 SRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNY-NKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQD-KGDTA  234 (263)
T ss_pred             CCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHH-cCCHH
Confidence            68999999999999999998   579999999887 5899999999999999998885   6888888988866 79999


Q ss_pred             HHHHHHHHHHHhCCCCHHHH
Q 024536          208 RAKSYFDRAVHSAPDDCHVL  227 (266)
Q Consensus       208 eAi~~~ekAL~l~P~da~a~  227 (266)
                      +|+.+|+++++..|+...+.
T Consensus       235 ~A~~~~~~vi~~yP~s~~a~  254 (263)
T PRK10803        235 KAKAVYQQVIKKYPGTDGAK  254 (263)
T ss_pred             HHHHHHHHHHHHCcCCHHHH
Confidence            99999999999999987654

>TIGR00540 hemY_coli hemY protein

Probab=98.84  E-value=2.2e-08  Score=96.03  Aligned_cols=108  Identities=18%  Similarity=0.149  Sum_probs=92.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHcCCHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALV----LANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG--NVLSMYGDLIWINHKDAP  207 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~a----l~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da--~al~nla~ll~~~~gd~d  207 (266)
                      +++++|++.++++++..|++...    +..+.. +  ..++.+++++.++++++.+|+|+  ..+..||+++++ .|+++
T Consensus       277 g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~-l--~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~-~~~~~  352 (409)
T TIGR00540       277 DDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPR-L--KPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMK-HGEFI  352 (409)
T ss_pred             CChHHHHHHHHHHHhhCCCcccchhHHHHHhhh-c--CCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH-cccHH
Confidence            68999999999999999999853    222222 1  24788999999999999999999  888899999977 89999


Q ss_pred             HHHHHHH--HHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536          208 RAKSYFD--RAVHSAPDDCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       208 eAi~~~e--kAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      +|.++|+  ++++.+|++.. +..+|.++++.|+.++|.++
T Consensus       353 ~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~  392 (409)
T TIGR00540       353 EAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAM  392 (409)
T ss_pred             HHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHH
Confidence            9999999  68888897765 55999999999999999864

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.84  E-value=6.8e-09  Score=73.77  Aligned_cols=55  Identities=16%  Similarity=0.288  Sum_probs=50.8

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG  189 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da  189 (266)
                      +++++|+.+|+++++.+|+++.+|+.+|.++. .+|++++|+.+|+++++++|++|
T Consensus        11 g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen   11 GDYDEAIAAFEQALKQDPDNPEAWYLLGRILY-QQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             THHHHHHHHHHHHHCCSTTHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCC
Confidence            68999999999999999999999999999987 68999999999999999999986

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.83  E-value=2.1e-08  Score=98.32  Aligned_cols=108  Identities=20%  Similarity=0.230  Sum_probs=96.8

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      ++|..|+.+|.+||..+|+++.++.|.|.++. ..+.+..|++.++++|+++|+...+|..-|.++.. ..+|++|+..|
T Consensus       372 gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~-kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~-mk~ydkAleay  449 (539)
T KOG0548|consen  372 GDYPEAVKHYTEAIKRDPEDARLYSNRAACYL-KLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRA-MKEYDKALEAY  449 (539)
T ss_pred             cCHHHHHHHHHHHHhcCCchhHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            78999999999999999999999999998775 57999999999999999999999999999988876 57899999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCcccc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDD  243 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA  243 (266)
                      +++++++|++.++...+..++..+......
T Consensus       450 ~eale~dp~~~e~~~~~~rc~~a~~~~~~~  479 (539)
T KOG0548|consen  450 QEALELDPSNAEAIDGYRRCVEAQRGDETP  479 (539)
T ss_pred             HHHHhcCchhHHHHHHHHHHHHHhhcCCCH
Confidence            999999999999988888877765333333

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.83  E-value=1.7e-08  Score=97.96  Aligned_cols=70  Identities=14%  Similarity=0.022  Sum_probs=64.9

Q ss_pred             HCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 024536          149 AYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNV---LSMYGDLIWINHKDAPRAKSYFDRAVHSA  220 (266)
Q Consensus       149 l~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~a---l~nla~ll~~~~gd~deAi~~~ekAL~l~  220 (266)
                      .+|+++.+|+|+|.+|+ ..|+|++|+.+|++||+++|+++++   |+|+|.+|.. .|++++|+.+|++|+++.
T Consensus        70 ~dP~~a~a~~NLG~AL~-~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~-LGr~dEAla~LrrALels  142 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLF-SKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAY-REEGKKAADCLRTALRDY  142 (453)
T ss_pred             CCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhc
Confidence            58999999999999987 5899999999999999999999965   9999998876 899999999999999983

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.82  E-value=2.9e-08  Score=71.77  Aligned_cols=64  Identities=23%  Similarity=0.228  Sum_probs=57.4

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024536          167 IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYA  231 (266)
Q Consensus       167 ~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA  231 (266)
                      ..+++++|.+++++++.++|+++.++..+|.+++. .|++++|+..|+++++..|+++.+....+
T Consensus         7 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~-~g~~~~A~~~l~~~l~~~p~~~~~~~~~a   70 (73)
T PF13371_consen    7 QQEDYEEALEVLERALELDPDDPELWLQRARCLFQ-LGRYEEALEDLERALELSPDDPDARALRA   70 (73)
T ss_pred             hCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHH-hccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence            57999999999999999999999999999998877 78999999999999999999988765544

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.78  E-value=1.1e-07  Score=87.81  Aligned_cols=93  Identities=15%  Similarity=0.121  Sum_probs=83.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIR--GDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS  211 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~--gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~  211 (266)
                      +++..|...|++|+++.|+|++++..||.+|+...  .+-.+|...+++||++||+|..+++.||..+++ +|||.+|+.
T Consensus       170 ~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe-~g~~~~A~~  248 (287)
T COG4235         170 GRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFE-QGDYAEAAA  248 (287)
T ss_pred             cchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-cccHHHHHH
Confidence            68899999999999999999999999999887433  355899999999999999999999999998877 899999999


Q ss_pred             HHHHHHHhCCCCHHHH
Q 024536          212 YFDRAVHSAPDDCHVL  227 (266)
Q Consensus       212 ~~ekAL~l~P~da~a~  227 (266)
                      .+++.++..|.+....
T Consensus       249 ~Wq~lL~~lp~~~~rr  264 (287)
T COG4235         249 AWQMLLDLLPADDPRR  264 (287)
T ss_pred             HHHHHHhcCCCCCchH
Confidence            9999999999765543

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.78  E-value=9.6e-08  Score=92.10  Aligned_cols=106  Identities=17%  Similarity=0.207  Sum_probs=96.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      ++++.|+.+|++..+.+|+   +...+|.++. ..++-.+|.+.+.++|..+|.++..+...+.++.. +++++.|+.+.
T Consensus       183 ~~~~~ai~lle~L~~~~pe---v~~~LA~v~l-~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~-k~~~~lAL~iA  257 (395)
T PF09295_consen  183 QRYDEAIELLEKLRERDPE---VAVLLARVYL-LMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS-KKKYELALEIA  257 (395)
T ss_pred             ccHHHHHHHHHHHHhcCCc---HHHHHHHHHH-hcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCCHHHHHHHH
Confidence            6799999999999999986   4445676665 46788999999999999999999999999998876 89999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDD  244 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~  244 (266)
                      ++|+.+.|++...|+.||.+|...|+++.|+
T Consensus       258 k~av~lsP~~f~~W~~La~~Yi~~~d~e~AL  288 (395)
T PF09295_consen  258 KKAVELSPSEFETWYQLAECYIQLGDFENAL  288 (395)
T ss_pred             HHHHHhCchhHHHHHHHHHHHHhcCCHHHHH
Confidence            9999999999999999999999999999998

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.76  E-value=1.9e-08  Score=72.11  Aligned_cols=52  Identities=23%  Similarity=0.278  Sum_probs=49.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRG-DFVKAEEYCGRAILAKP  186 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~g-d~e~A~~~~erAL~ldP  186 (266)
                      +++++|+.+|.+||+++|+++.+|+++|.++. ..+ ++++|+++|++||+++|
T Consensus        17 ~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~-~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen   17 GDYEEAIEYFEKAIELDPNNAEAYYNLGLAYM-KLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             THHHHHHHHHHHHHHHSTTHHHHHHHHHHHHH-HTTTHHHHHHHHHHHHHHHST
T ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HhCccHHHHHHHHHHHHHcCc
Confidence            68999999999999999999999999999886 578 79999999999999998

...

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.76  E-value=6.9e-09  Score=77.74  Aligned_cols=77  Identities=16%  Similarity=0.249  Sum_probs=68.7

Q ss_pred             cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccc
Q 024536          168 RGDFVKAEEYCGRAILAKPG--DGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDD  245 (266)
Q Consensus       168 ~gd~e~A~~~~erAL~ldP~--da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~  245 (266)
                      +++++.|+.+|+++++.+|.  +..+++++|.++++ .|++++|+.++++ +..+|.+...+..+|.++.++|++++|++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~-~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ-QGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH-TTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH-CCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            58899999999999999995  56677788999987 8999999999999 99999999999999999999999999986


Q ss_pred             c
Q 024536          246 G  246 (266)
Q Consensus       246 ~  246 (266)
                      +
T Consensus        80 ~   80 (84)
T PF12895_consen   80 A   80 (84)
T ss_dssp             H
T ss_pred             H
Confidence            5

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.75  E-value=3.2e-08  Score=91.38  Aligned_cols=79  Identities=13%  Similarity=0.058  Sum_probs=75.0

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536          167 IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       167 ~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      ..++|++|+..|.+||+++|.|+-.|.|.|.+|.+ .|.++.|++-++.||.+||.+..+|..||.+|..+|++++|++-
T Consensus        93 ~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~-Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~a  171 (304)
T KOG0553|consen   93 KNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSK-LGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEA  171 (304)
T ss_pred             HhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH-hcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHH
Confidence            36899999999999999999999999999999977 68999999999999999999999999999999999999999953

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.74  E-value=2.8e-08  Score=70.85  Aligned_cols=63  Identities=13%  Similarity=0.205  Sum_probs=57.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGD  197 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~  197 (266)
                      +++++|+.+|+++++.+|+++.+++.+|.++. ..|++++|..++++++..+|+++.++..++.
T Consensus         5 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    5 GDYDEAIELLEKALQRNPDNPEARLLLAQCYL-KQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             THHHHHHHHHHHHHHHTTTSHHHHHHHHHHHH-HTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            68999999999999999999999999999887 5899999999999999999999888876654

...

>TIGR00540 hemY_coli hemY protein

Probab=98.74  E-value=1.4e-07  Score=90.42  Aligned_cols=111  Identities=18%  Similarity=0.111  Sum_probs=99.8

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG-NVLSMYGDLIWINHKDAPRAKSY  212 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da-~al~nla~ll~~~~gd~deAi~~  212 (266)
                      ++++.|++.+.++.+..|+....+...|.+.. .+|++++|..+++++.+..|++. .+...++.++.. .+++++|...
T Consensus        98 g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~-~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~-~~~~~~Al~~  175 (409)
T TIGR00540        98 GDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQ-QRGDEARANQHLEEAAELAGNDNILVEIARTRILLA-QNELHAARHG  175 (409)
T ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHH-CCCHHHHHHH
Confidence            79999999999999999998888887788765 58999999999999999999986 466667877766 8999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536          213 FDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       213 ~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      +++.++..|+++.++..++.++...|++++|++.
T Consensus       176 l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~  209 (409)
T TIGR00540       176 VDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDI  209 (409)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHH
Confidence            9999999999999999999999999999988853

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.70  E-value=3.4e-07  Score=75.45  Aligned_cols=110  Identities=13%  Similarity=0.170  Sum_probs=93.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHH
Q 024536          134 KESESMDVYYQEMIKAYPED---ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD---GNVLSMYGDLIWINHKDAP  207 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~---~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d---a~al~nla~ll~~~~gd~d  207 (266)
                      ++..++.+.+++.++-+|+.   ..+.+.+|.+++ ..|++++|...|++++...|++   +.+...++.++.. .++++
T Consensus        25 ~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~-~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~-~~~~d  102 (145)
T PF09976_consen   25 GDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAY-EQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQ-QGQYD  102 (145)
T ss_pred             CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH-cCCHH
Confidence            57788888999999999999   466777888876 5899999999999999988776   3577788998877 89999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536          208 RAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       208 eAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      +|+..+++ +.-.+-.+.++...|.++...|+.++|.+.
T Consensus       103 ~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~  140 (145)
T PF09976_consen  103 EALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAA  140 (145)
T ss_pred             HHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            99999977 444555677888999999999999999854

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.66  E-value=2.6e-07  Score=88.54  Aligned_cols=107  Identities=16%  Similarity=0.125  Sum_probs=94.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      ++.++|++.++++++ .|.++.+...++.+.   .++.++|.+.+++.++..|+|+..+..+|.++.. .+++++|..+|
T Consensus       277 g~~~~A~~~L~~~l~-~~~~~~l~~l~~~l~---~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~-~~~~~~A~~~l  351 (398)
T PRK10747        277 DDHDTAQQIILDGLK-RQYDERLVLLIPRLK---TNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMK-HGEWQEASLAF  351 (398)
T ss_pred             CCHHHHHHHHHHHHh-cCCCHHHHHHHhhcc---CCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence            788999999999999 555777666666542   4899999999999999999999999999999977 89999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      +++++++|++.. +..++.++...|+.++|.+.
T Consensus       352 e~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~  383 (398)
T PRK10747        352 RAALKQRPDAYD-YAWLADALDRLHKPEEAAAM  383 (398)
T ss_pred             HHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHH
Confidence            999999998755 45799999999999999854

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.66  E-value=2.1e-07  Score=89.02  Aligned_cols=109  Identities=15%  Similarity=0.167  Sum_probs=94.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPED---------------ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDL  198 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~---------------~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~l  198 (266)
                      ++|..|...|++|+..-...               ..+|+|+|.++. ..++|.+|+.++.++|+++|+|.-+++..|.+
T Consensus       222 gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~l-Kl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A  300 (397)
T KOG0543|consen  222 GKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYL-KLKEYKEAIESCNKVLELDPNNVKALYRRGQA  300 (397)
T ss_pred             chHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHH-hhhhHHHHHHHHHHHHhcCCCchhHHHHHHHH
Confidence            78999999999998875411               246788887765 57999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536          199 IWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDD  244 (266)
Q Consensus       199 l~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~  244 (266)
                      +.. .++|+.|+..|++|++++|+|..+...+..+.....++.+.+
T Consensus       301 ~l~-~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~ke  345 (397)
T KOG0543|consen  301 LLA-LGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKE  345 (397)
T ss_pred             HHh-hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            977 799999999999999999999999988888777666655554

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.65  E-value=2.8e-07  Score=75.02  Aligned_cols=87  Identities=17%  Similarity=0.108  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHH
Q 024536          156 VLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD---GNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPD---DCHVLAS  229 (266)
Q Consensus       156 al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d---a~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~---da~a~~~  229 (266)
                      +++++|.++. ..|+.++|+.+|++|++...+.   ..++..+|..+.. .|++++|+.++++++...|+   +..+...
T Consensus         3 ~~~~~A~a~d-~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~-LG~~deA~~~L~~~~~~~p~~~~~~~l~~f   80 (120)
T PF12688_consen    3 ALYELAWAHD-SLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRN-LGRYDEALALLEEALEEFPDDELNAALRVF   80 (120)
T ss_pred             hHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence            4455555443 3555556666666665554333   2345555555543 45566666666655555555   4445555


Q ss_pred             HHHHHHHcCCccccc
Q 024536          230 YARFLWDAGEEEDDD  244 (266)
Q Consensus       230 lA~ll~~~G~~~eA~  244 (266)
                      ++.++...|+.++|+
T Consensus        81 ~Al~L~~~gr~~eAl   95 (120)
T PF12688_consen   81 LALALYNLGRPKEAL   95 (120)
T ss_pred             HHHHHHHCCCHHHHH
Confidence            555555555555555

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.64  E-value=2.9e-07  Score=93.52  Aligned_cols=126  Identities=14%  Similarity=0.163  Sum_probs=107.1

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH--H
Q 024536          135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS--Y  212 (266)
Q Consensus       135 ~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~--~  212 (266)
                      ..++|.-++.+|-.++|-.+..|+..|..+. ++|.+++|...|..|+.+||++..++..+|.++.+ .|+..-|..  +
T Consensus       665 ~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~-~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle-~G~~~la~~~~~  742 (799)
T KOG4162|consen  665 NDDEARSCLLEASKIDPLSASVYYLRGLLLE-VKGQLEEAKEAFLVALALDPDHVPSMTALAELLLE-LGSPRLAEKRSL  742 (799)
T ss_pred             CchHHHHHHHHHHhcchhhHHHHHHhhHHHH-HHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-hCCcchHHHHHH
Confidence            4578888999999999999999999998764 78999999999999999999999999999999877 677666666  9


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCccccccc------ccccccCCCCCCCCCC
Q 024536          213 FDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG------DDQETCASQPNILPPL  262 (266)
Q Consensus       213 ~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~------~~~~~~~~~~~~~~~~  262 (266)
                      +..|++++|.++.+|+++|.++...|+.++|.+-      =|...-+-|....|++
T Consensus       743 L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~pFs~ip~~  798 (799)
T KOG4162|consen  743 LSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVLPFSNIPPV  798 (799)
T ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCcccccccCCC
Confidence            9999999999999999999999999999999852      2444444444445553

>PRK15331 chaperone protein SicA; Provisional

Probab=98.63  E-value=3.9e-07  Score=78.02  Aligned_cols=92  Identities=13%  Similarity=0.134  Sum_probs=83.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+.+|+-....+|.++..|..||.++. .+++|++|+.+|..|..++++||...+..|.++.. .++.+.|+.+|
T Consensus        51 Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q-~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~-l~~~~~A~~~f  128 (165)
T PRK15331         51 GRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQ-LKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL-MRKAAKARQCF  128 (165)
T ss_pred             CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHH-hCCHHHHHHHH
Confidence            68999999999999999999999999998775 68999999999999999999999999999998876 78999999999


Q ss_pred             HHHHHhCCCCHHHHH
Q 024536          214 DRAVHSAPDDCHVLA  228 (266)
Q Consensus       214 ekAL~l~P~da~a~~  228 (266)
                      +.|+. .|.+..+..
T Consensus       129 ~~a~~-~~~~~~l~~  142 (165)
T PRK15331        129 ELVNE-RTEDESLRA  142 (165)
T ss_pred             HHHHh-CcchHHHHH
Confidence            99999 687766543

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.63  E-value=1.5e-07  Score=88.53  Aligned_cols=123  Identities=15%  Similarity=0.097  Sum_probs=102.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C-CHHHHHHHHHHHHHHcCCHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKP--G-DGNVLSMYGDLIWINHKDAPRAK  210 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP--~-da~al~nla~ll~~~~gd~deAi  210 (266)
                      ++.+-|..+|++.|+..-.+++++.|+|.+.. ..++++-++..|+||+...-  + -+++|+|+|.+... .||+.-|.
T Consensus       338 ~~PE~AlryYRRiLqmG~~speLf~NigLCC~-yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~-iGD~nlA~  415 (478)
T KOG1129|consen  338 NNPEMALRYYRRILQMGAQSPELFCNIGLCCL-YAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVT-IGDFNLAK  415 (478)
T ss_pred             CChHHHHHHHHHHHHhcCCChHHHhhHHHHHH-hhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEe-ccchHHHH
Confidence            57788999999999999999999999987654 46889999999999998753  3 35789999988766 79999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccc----cccccccCCCCCC
Q 024536          211 SYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDD----GDDQETCASQPNI  258 (266)
Q Consensus       211 ~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~----~~~~~~~~~~~~~  258 (266)
                      .+|+-|+..||++.+++.++|.+-.+.|+.++|..    -.+.+-+++-+++
T Consensus       416 rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~  467 (478)
T KOG1129|consen  416 RCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTT  467 (478)
T ss_pred             HHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccccccc
Confidence            99999999999999999999999999999999983    2455555554443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.61  E-value=2.7e-07  Score=66.56  Aligned_cols=62  Identities=19%  Similarity=0.217  Sum_probs=57.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYG  196 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla  196 (266)
                      +++++|+++++++++++|+++.+|..+|.++. ..|++++|.+.|+++++..|+++.+....+
T Consensus         9 ~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~-~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a   70 (73)
T PF13371_consen    9 EDYEEALEVLERALELDPDDPELWLQRARCLF-QLGRYEEALEDLERALELSPDDPDARALRA   70 (73)
T ss_pred             CCHHHHHHHHHHHHHhCcccchhhHHHHHHHH-HhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence            78999999999999999999999999999887 589999999999999999999998876544

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.60  E-value=4.3e-07  Score=94.85  Aligned_cols=111  Identities=15%  Similarity=-0.012  Sum_probs=84.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+++|+++++.+|+++.++..++.++. ..++.++|++.+++++..+|.+... ..++.++.. .++..+|+..|
T Consensus       116 gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~-~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~-~~~~~~AL~~~  192 (822)
T PRK14574        116 KRWDQALALWQSSLKKDPTNPDLISGMIMTQA-DAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRA-TDRNYDALQAS  192 (822)
T ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh-hcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHh-cchHHHHHHHH
Confidence            67888888888888888888888877766554 4688888888888888888886554 334444433 46666688888


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCcccccccc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGD  247 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~  247 (266)
                      +++++++|++..++..+..++...|-..-|.+.-
T Consensus       193 ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~  226 (822)
T PRK14574        193 SEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLA  226 (822)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHH
Confidence            8888888888888888888888888877777543

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.60  E-value=2.7e-07  Score=89.74  Aligned_cols=123  Identities=15%  Similarity=0.105  Sum_probs=107.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|...|++||.-+..-..+++|.|..+. ..|++++|+.||-+.-.+--+++++++.++.+|. ...+...|+++|
T Consensus       504 gd~dka~~~ykeal~ndasc~ealfniglt~e-~~~~ldeald~f~klh~il~nn~evl~qianiye-~led~aqaie~~  581 (840)
T KOG2003|consen  504 GDLDKAAEFYKEALNNDASCTEALFNIGLTAE-ALGNLDEALDCFLKLHAILLNNAEVLVQIANIYE-LLEDPAQAIELL  581 (840)
T ss_pred             CcHHHHHHHHHHHHcCchHHHHHHHHhcccHH-HhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HhhCHHHHHHHH
Confidence            68999999999999999999999999997664 6899999999999888888889999999999885 478999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCcccccccccccccCCCCCC
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDDQETCASQPNI  258 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~~~~~~~~~~~  258 (266)
                      -+|..+-|+++.++..||.+|-+-|+...|-+---+.-.-+|-|+
T Consensus       582 ~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~ni  626 (840)
T KOG2003|consen  582 MQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNI  626 (840)
T ss_pred             HHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcch
Confidence            999999999999999999999999998888865433333444443

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.59  E-value=3e-07  Score=90.37  Aligned_cols=100  Identities=15%  Similarity=0.152  Sum_probs=92.9

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024536          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY  212 (266)
Q Consensus       133 ~~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~  212 (266)
                      .++++.|+.+|-.||.++|.|..++.|....+. ..++|++|+.-..+.++++|+.+..|...|..+.- .|+|++|+..
T Consensus        15 ~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a-~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~-lg~~~eA~~a   92 (539)
T KOG0548|consen   15 SGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYA-SLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG-LGDYEEAILA   92 (539)
T ss_pred             cccHHHHHHHHHHHHccCCCccchhcchHHHHH-HHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh-cccHHHHHHH
Confidence            479999999999999999999999999876654 57999999999999999999999999999998866 7999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHH
Q 024536          213 FDRAVHSAPDDCHVLASYARFL  234 (266)
Q Consensus       213 ~ekAL~l~P~da~a~~~lA~ll  234 (266)
                      |.+.|+.+|++......++.++
T Consensus        93 y~~GL~~d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   93 YSEGLEKDPSNKQLKTGLAQAY  114 (539)
T ss_pred             HHHHhhcCCchHHHHHhHHHhh
Confidence            9999999999999999998887

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.58  E-value=4.2e-07  Score=83.21  Aligned_cols=94  Identities=18%  Similarity=0.118  Sum_probs=79.7

Q ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHH
Q 024536          153 DALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD---GNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD---CHV  226 (266)
Q Consensus       153 ~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d---a~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~d---a~a  226 (266)
                      +...+++.|..+....++|++|...|++.|...|++   +.+++.+|.+++. .|++++|+.+|++++...|++   +.+
T Consensus       141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~-~g~~~~A~~~f~~vv~~yP~s~~~~dA  219 (263)
T PRK10803        141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYN-KGKKDDAAYYFASVVKNYPKSPKAADA  219 (263)
T ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence            345555555544334689999999999999999998   5899999999987 899999999999999999985   668


Q ss_pred             HHHHHHHHHHcCCcccccccc
Q 024536          227 LASYARFLWDAGEEEDDDDGD  247 (266)
Q Consensus       227 ~~~lA~ll~~~G~~~eA~~~~  247 (266)
                      +..+|.++...|+.++|.+.-
T Consensus       220 l~klg~~~~~~g~~~~A~~~~  240 (263)
T PRK10803        220 MFKVGVIMQDKGDTAKAKAVY  240 (263)
T ss_pred             HHHHHHHHHHcCCHHHHHHHH
Confidence            889999999999999999653

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.55  E-value=1.6e-07  Score=95.06  Aligned_cols=111  Identities=14%  Similarity=0.067  Sum_probs=102.0

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024536          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY  212 (266)
Q Consensus       133 ~~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~  212 (266)
                      .++|++|.+++++.++++|-....|+++|.+.. +.++++.|..+|.+++.++|++.++|+|++..+.. .++-.+|-..
T Consensus       498 ~~~fs~~~~hle~sl~~nplq~~~wf~~G~~AL-qlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~-~~~k~ra~~~  575 (777)
T KOG1128|consen  498 NKDFSEADKHLERSLEINPLQLGTWFGLGCAAL-QLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIR-LKKKKRAFRK  575 (777)
T ss_pred             chhHHHHHHHHHHHhhcCccchhHHHhccHHHH-HHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHH-HhhhHHHHHH
Confidence            378999999999999999999999999998765 57889999999999999999999999999988876 6889999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCcccccc
Q 024536          213 FDRAVHSAPDDCHVLASYARFLWDAGEEEDDDD  245 (266)
Q Consensus       213 ~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~  245 (266)
                      +++|++-+=.+..+|-||-.+.-+.|++++|++
T Consensus       576 l~EAlKcn~~~w~iWENymlvsvdvge~eda~~  608 (777)
T KOG1128|consen  576 LKEALKCNYQHWQIWENYMLVSVDVGEFEDAIK  608 (777)
T ss_pred             HHHHhhcCCCCCeeeechhhhhhhcccHHHHHH
Confidence            999999998888999999999999999999983

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.53  E-value=7.2e-07  Score=88.82  Aligned_cols=88  Identities=11%  Similarity=0.075  Sum_probs=76.9

Q ss_pred             CHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024536          135 ESESMDVYYQEMIKA--YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY  212 (266)
Q Consensus       135 ~~eeA~~~y~rALel--~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~  212 (266)
                      +..+|.+..++++.+  +|.++.+|..+|.... ..|++++|..+|++|++++| +..+|..+|.++.. .|++++|+.+
T Consensus       399 ~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~-~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~-~G~~~eA~~~  475 (517)
T PRK10153        399 QLAALSTELDNIVALPELNVLPRIYEILAVQAL-VKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYEL-KGDNRLAADA  475 (517)
T ss_pred             HHHHHHHHHHHhhhcccCcCChHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHH-cCCHHHHHHH
Confidence            456788888887775  8888888988887654 57999999999999999999 58999999998865 8999999999


Q ss_pred             HHHHHHhCCCCHH
Q 024536          213 FDRAVHSAPDDCH  225 (266)
Q Consensus       213 ~ekAL~l~P~da~  225 (266)
                      |++|+.++|.++.
T Consensus       476 ~~~A~~L~P~~pt  488 (517)
T PRK10153        476 YSTAFNLRPGENT  488 (517)
T ss_pred             HHHHHhcCCCCch
Confidence            9999999998875

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.53  E-value=1.3e-06  Score=83.58  Aligned_cols=110  Identities=15%  Similarity=0.078  Sum_probs=87.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHHcCCHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSM-YGDLIWINHKDAPRAKSY  212 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~n-la~ll~~~~gd~deAi~~  212 (266)
                      |++++|++...++-+..+ ++.+++.++-......|++++|..+|++|.+.+|++..+... .+.++.. .|++++|+.+
T Consensus        98 Gd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~-~g~~~~Al~~  175 (398)
T PRK10747         98 GDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLA-RNENHAARHG  175 (398)
T ss_pred             CCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH-CCCHHHHHHH
Confidence            688999977777665433 355555554333236899999999999999999998654433 3555544 8999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCcccccc
Q 024536          213 FDRAVHSAPDDCHVLASYARFLWDAGEEEDDDD  245 (266)
Q Consensus       213 ~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~  245 (266)
                      ++++++.+|+++.++..++.+|...|++++|++
T Consensus       176 l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~  208 (398)
T PRK10747        176 VDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLD  208 (398)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHH
Confidence            999999999999999999999999999999983

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.53  E-value=9.4e-08  Score=98.91  Aligned_cols=123  Identities=14%  Similarity=0.154  Sum_probs=108.8

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024536          132 SGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS  211 (266)
Q Consensus       132 ~~~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~  211 (266)
                      ..+.+++|+++|.++|+.+|.|..+-+-+|.+|. .+|++.+|...|.++.+.--+++.+|.|+|.+|.. +|+|-.|++
T Consensus       624 ~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA-~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e-~~qy~~AIq  701 (1018)
T KOG2002|consen  624 EKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLA-EKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVE-QGQYRLAIQ  701 (1018)
T ss_pred             HHHHHHHHHHHHHHHHhcCcchhhhccchhhhhh-hccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHH-HHHHHHHHH
Confidence            3478999999999999999999999999999886 58999999999999999998999999999999987 799999999


Q ss_pred             HHHHHHHhCC--CCHHHHHHHHHHHHHcCCcccccccccccccCCCC
Q 024536          212 YFDRAVHSAP--DDCHVLASYARFLWDAGEEEDDDDGDDQETCASQP  256 (266)
Q Consensus       212 ~~ekAL~l~P--~da~a~~~lA~ll~~~G~~~eA~~~~~~~~~~~~~  256 (266)
                      .|+.++...=  ++..++..||.++++.+++.+|.+.-...-|+.|.
T Consensus       702 mYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~  748 (1018)
T KOG2002|consen  702 MYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPS  748 (1018)
T ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCc
Confidence            9999998753  68899999999999999999998655544454444

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.51  E-value=1.5e-07  Score=69.09  Aligned_cols=67  Identities=22%  Similarity=0.367  Sum_probs=55.2

Q ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CC---CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024536          151 PEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAK----PG---DGNVLSMYGDLIWINHKDAPRAKSYFDRAVHS  219 (266)
Q Consensus       151 P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ld----P~---da~al~nla~ll~~~~gd~deAi~~~ekAL~l  219 (266)
                      |+-+.++.++|.++. ..|++++|+.+|++|+.+.    ++   -+.++.++|.++.. .|++++|+.+|++|+++
T Consensus         2 ~~~a~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    2 PDTANAYNNLARVYR-ELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR-LGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhh
Confidence            445678999999887 6899999999999999752    22   25678899998876 89999999999999986

...

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.50  E-value=4.3e-07  Score=90.91  Aligned_cols=109  Identities=9%  Similarity=-0.027  Sum_probs=59.8

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      ++.++|..+.+.++..++.....|..+|.+.. ..++|++|++||+.|+.++|+|-.+|..++.+-.+ .+|++-....-
T Consensus        55 g~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R-~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Q-mRd~~~~~~tr  132 (700)
T KOG1156|consen   55 GKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR-SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQ-MRDYEGYLETR  132 (700)
T ss_pred             cchHHHHHHHHHHhccCcccchhHHHHHHHHh-hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-HHhhhhHHHHH
Confidence            45555555555555555555555555554433 34555555555555555555555555555543333 45555555555


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDD  244 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~  244 (266)
                      .+.+++.|..-..|..+|..+...|++..|.
T Consensus       133 ~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~  163 (700)
T KOG1156|consen  133 NQLLQLRPSQRASWIGFAVAQHLLGEYKMAL  163 (700)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555555555555555555

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.49  E-value=6.4e-07  Score=93.82  Aligned_cols=107  Identities=11%  Similarity=0.056  Sum_probs=92.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------------------HHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG-------------------NVLSM  194 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da-------------------~al~n  194 (266)
                      +++++|++.++.+++.+|+...+|+.+|.+++ ..+++.+|...  +++.+-+.+.                   .+++.
T Consensus        45 ~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~-q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~  121 (906)
T PRK14720         45 NLTDEAKDICEEHLKEHKKSISALYISGILSL-SRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRT  121 (906)
T ss_pred             CCHHHHHHHHHHHHHhCCcceehHHHHHHHHH-hhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHH
Confidence            78999999999999999999999999998554 45656555444  5666555555                   99999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccc
Q 024536          195 YGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDD  245 (266)
Q Consensus       195 la~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~  245 (266)
                      +|.+|-. .|+.++|.+.|+++|+++|+|+.++++||.+|... +.+.|++
T Consensus       122 LA~~Ydk-~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~  170 (906)
T PRK14720        122 LAEAYAK-LNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAIT  170 (906)
T ss_pred             HHHHHHH-cCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHH
Confidence            9988755 79999999999999999999999999999999999 9998884

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.47  E-value=8e-07  Score=90.37  Aligned_cols=90  Identities=16%  Similarity=0.149  Sum_probs=81.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEE--YCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS  211 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~--~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~  211 (266)
                      +.+++|.+.|..|+.+||+++.++..+|.++. ..|+..-|+.  +...|+++||.++++|+.+|.++.. +||.++|..
T Consensus       698 ~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll-e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~-~Gd~~~Aae  775 (799)
T KOG4162|consen  698 GQLEEAKEAFLVALALDPDHVPSMTALAELLL-ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKK-LGDSKQAAE  775 (799)
T ss_pred             HhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH-HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-ccchHHHHH
Confidence            68899999999999999999999999999886 4677666666  9999999999999999999998855 899999999


Q ss_pred             HHHHHHHhCCCCHH
Q 024536          212 YFDRAVHSAPDDCH  225 (266)
Q Consensus       212 ~~ekAL~l~P~da~  225 (266)
                      +|+.|+.+++.+|.
T Consensus       776 cf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  776 CFQAALQLEESNPV  789 (799)
T ss_pred             HHHHHHhhccCCCc
Confidence            99999999998764

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.45  E-value=2.6e-06  Score=77.63  Aligned_cols=104  Identities=14%  Similarity=0.183  Sum_probs=55.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +.+++|+++|...|+-||.|..++-.--.++. .+|..-+|++....-++.-++|+++|..++.+|.. .++|++|.-+|
T Consensus       100 ~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilk-a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~-~~~f~kA~fCl  177 (289)
T KOG3060|consen  100 GNYKEAIEYYESLLEDDPTDTVIRKRKLAILK-AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLS-EGDFEKAAFCL  177 (289)
T ss_pred             hchhhHHHHHHHHhccCcchhHHHHHHHHHHH-HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-HhHHHHHHHHH
Confidence            45566666666666666666554432111222 34544555555555555555555555555555544 45555555555


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCC
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGE  239 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~  239 (266)
                      ++.+-++|-++..+..||.+++-+|.
T Consensus       178 EE~ll~~P~n~l~f~rlae~~Yt~gg  203 (289)
T KOG3060|consen  178 EELLLIQPFNPLYFQRLAEVLYTQGG  203 (289)
T ss_pred             HHHHHcCCCcHHHHHHHHHHHHHHhh
Confidence            55555555555555555555554443

>PRK15331 chaperone protein SicA; Provisional

Probab=98.44  E-value=6.2e-07  Score=76.77  Aligned_cols=94  Identities=10%  Similarity=-0.074  Sum_probs=83.4

Q ss_pred             CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 024536          150 YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLAS  229 (266)
Q Consensus       150 ~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~  229 (266)
                      .++.-+..+.+|.-++ ..|++++|+.+|+-....+|.+++.|..||.++. .+++|++|+..|-.|..++++|+...+.
T Consensus        33 s~~~le~iY~~Ay~~y-~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q-~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~  110 (165)
T PRK15331         33 PQDMMDGLYAHAYEFY-NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQ-LKKQFQKACDLYAVAFTLLKNDYRPVFF  110 (165)
T ss_pred             CHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcccCCCCccch
Confidence            3344456677777666 5899999999999999999999999999998875 4899999999999999999999999999


Q ss_pred             HHHHHHHcCCcccccc
Q 024536          230 YARFLWDAGEEEDDDD  245 (266)
Q Consensus       230 lA~ll~~~G~~~eA~~  245 (266)
                      .|..++..++.+.|.+
T Consensus       111 agqC~l~l~~~~~A~~  126 (165)
T PRK15331        111 TGQCQLLMRKAAKARQ  126 (165)
T ss_pred             HHHHHHHhCCHHHHHH
Confidence            9999999999999984

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.44  E-value=7.4e-07  Score=88.42  Aligned_cols=110  Identities=24%  Similarity=0.375  Sum_probs=91.4

Q ss_pred             CCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKA--------YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAK--------PGDGNVLSMYGD  197 (266)
Q Consensus       134 ~~~eeA~~~y~rALel--------~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ld--------P~da~al~nla~  197 (266)
                      +.+.+|+.+|++|+.+        +|.-+.++.|||.+++ ..|++++|+.++++|+.+-        |.-+..+.+++.
T Consensus       255 ~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~-~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~  333 (508)
T KOG1840|consen  255 GKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYY-KQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAA  333 (508)
T ss_pred             ccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHH
Confidence            8999999999999987        4555689999999886 6899999999999999863        333456777777


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHcCCcccccc
Q 024536          198 LIWINHKDAPRAKSYFDRAVHSA-----PDD---CHVLASYARFLWDAGEEEDDDD  245 (266)
Q Consensus       198 ll~~~~gd~deAi~~~ekAL~l~-----P~d---a~a~~~lA~ll~~~G~~~eA~~  245 (266)
                      ++. .++++++|+.++++++++-     +++   +....+||.+|..+|++.+|++
T Consensus       334 ~~~-~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~  388 (508)
T KOG1840|consen  334 ILQ-SMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEE  388 (508)
T ss_pred             HHH-HhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHH
Confidence            664 4899999999999999864     233   4578899999999999999995

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.44  E-value=6.5e-07  Score=88.55  Aligned_cols=111  Identities=15%  Similarity=0.085  Sum_probs=102.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +.+.+|..+|-||..+||....+|..+|..+. .+++.++|..+|-+|-++=|........+|.-+.. .+.++-|..+|
T Consensus       326 ~k~seARry~SKat~lD~~fgpaWl~fghsfa-~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~-t~n~kLAe~Ff  403 (611)
T KOG1173|consen  326 GKYSEARRYFSKATTLDPTFGPAWLAFGHSFA-GEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMR-TNNLKLAEKFF  403 (611)
T ss_pred             cCcHHHHHHHHHHhhcCccccHHHHHHhHHhh-hcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHH-hccHHHHHHHH
Confidence            67899999999999999999999999999875 68999999999999999999988888888876654 78999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      .+|+.+.|+|+-+++.+|.+.+..+.+.+|+..
T Consensus       404 ~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~  436 (611)
T KOG1173|consen  404 KQALAIAPSDPLVLHELGVVAYTYEEYPEALKY  436 (611)
T ss_pred             HHHHhcCCCcchhhhhhhheeehHhhhHHHHHH
Confidence            999999999999999999999999999999853

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.41  E-value=5.2e-06  Score=67.58  Aligned_cols=87  Identities=16%  Similarity=0.117  Sum_probs=76.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHcC
Q 024536          131 DSGKESESMDVYYQEMIKAYPED---ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG---DGNVLSMYGDLIWINHK  204 (266)
Q Consensus       131 ~~~~~~eeA~~~y~rALel~P~~---~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~---da~al~nla~ll~~~~g  204 (266)
                      ++.|+.++|+.+|++|++.....   ..++.++|..+. ..|++++|+..+++++...|+   +..+...++.+++. .|
T Consensus        12 d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr-~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~-~g   89 (120)
T PF12688_consen   12 DSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLR-NLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN-LG   89 (120)
T ss_pred             HhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH-CC
Confidence            45578999999999999987665   468889998886 689999999999999999898   78888889988877 79


Q ss_pred             CHHHHHHHHHHHHHh
Q 024536          205 DAPRAKSYFDRAVHS  219 (266)
Q Consensus       205 d~deAi~~~ekAL~l  219 (266)
                      ++++|+.++-.++.-
T Consensus        90 r~~eAl~~~l~~la~  104 (120)
T PF12688_consen   90 RPKEALEWLLEALAE  104 (120)
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999998863

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.38  E-value=5.7e-06  Score=75.39  Aligned_cols=96  Identities=17%  Similarity=0.246  Sum_probs=84.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--CHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHK--DAPRAKS  211 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~g--d~deAi~  211 (266)
                      +..-+|++.+.+-++..+.|.++|..++.++. ..++|++|.-||++.+-+.|.++..+..||.+++-..|  +++-|..
T Consensus       134 GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~-~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ark  212 (289)
T KOG3060|consen  134 GKNLEAIKELNEYLDKFMNDQEAWHELAEIYL-SEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARK  212 (289)
T ss_pred             CCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHH-hHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            34459999999999999999999999999876 58999999999999999999999999999999876433  6788999


Q ss_pred             HHHHHHHhCCCCHHHHHHH
Q 024536          212 YFDRAVHSAPDDCHVLASY  230 (266)
Q Consensus       212 ~~ekAL~l~P~da~a~~~l  230 (266)
                      ||.+|++++|.+..+++.+
T Consensus       213 yy~~alkl~~~~~ral~GI  231 (289)
T KOG3060|consen  213 YYERALKLNPKNLRALFGI  231 (289)
T ss_pred             HHHHHHHhChHhHHHHHHH
Confidence            9999999999887776543

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.36  E-value=1.2e-06  Score=90.98  Aligned_cols=115  Identities=13%  Similarity=0.171  Sum_probs=65.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----------
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIR--GDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI----------  201 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~--gd~e~A~~~~erAL~ldP~da~al~nla~ll~~----------  201 (266)
                      +..+.|+..|.+|++++|.++.++..||.+.....  ..+..|...+.+|...+|+||.++..++.-++.          
T Consensus       213 ~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~l  292 (1018)
T KOG2002|consen  213 GMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHL  292 (1018)
T ss_pred             cchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHH
Confidence            45566677777777777766666666665432111  224555555566666666665555555543332          


Q ss_pred             --------------------------HcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCccccccccc
Q 024536          202 --------------------------NHKDAPRAKSYFDRAVHSAPDD-CHVLASYARFLWDAGEEEDDDDGDD  248 (266)
Q Consensus       202 --------------------------~~gd~deAi~~~ekAL~l~P~d-a~a~~~lA~ll~~~G~~~eA~~~~~  248 (266)
                                                .+|||++|..||.+++..+|++ ...+..+|..+...|+.+.++.-+|
T Consensus       293 a~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fE  366 (1018)
T KOG2002|consen  293 AEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFE  366 (1018)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHH
Confidence                                      2566666666666666666665 4445566666666666666654333

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.36  E-value=5e-06  Score=80.21  Aligned_cols=109  Identities=17%  Similarity=0.281  Sum_probs=93.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      --.++|.++|+++|+++|....+.+.+|.++. ..|.+++++.+++++|..-|++ ..+..+|.++.. +..+++|..+|
T Consensus       418 ~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~-~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A-~Ne~Q~am~~y  494 (564)
T KOG1174|consen  418 RMREKAKKFAEKSLKINPIYTPAVNLIAELCQ-VEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRA-QNEPQKAMEYY  494 (564)
T ss_pred             hhHHHHHHHHHhhhccCCccHHHHHHHHHHHH-hhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHH-hhhHHHHHHHH
Confidence            34699999999999999999999999998765 6899999999999999999976 567889998866 78999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      .+|+.+||++-..+..+-. +-+..+..+|.++
T Consensus       495 ~~ALr~dP~~~~sl~Gl~~-lEK~~~~~DATdE  526 (564)
T KOG1174|consen  495 YKALRQDPKSKRTLRGLRL-LEKSDDESDATDE  526 (564)
T ss_pred             HHHHhcCccchHHHHHHHH-HHhccCCCCcccc
Confidence            9999999999988877754 4555556677644

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.34  E-value=1.2e-06  Score=88.69  Aligned_cols=109  Identities=13%  Similarity=0.119  Sum_probs=94.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH---------------------------HcCCHHHHHHHHHHHHHhCC
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKE---------------------------IRGDFVKAEEYCGRAILAKP  186 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~---------------------------~~gd~e~A~~~~erAL~ldP  186 (266)
                      ++..+|+...++-++ .|.++.+|-.+|+++..                           ..++|++|.++++++++++|
T Consensus       438 g~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~np  516 (777)
T KOG1128|consen  438 GQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINP  516 (777)
T ss_pred             cccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCc
Confidence            566778888888888 77778888777765311                           13789999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536          187 GDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDD  244 (266)
Q Consensus       187 ~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~  244 (266)
                      -....|+++|.+.++ .+++..|..+|.+++.++|++.++|++++.+|...++..+|-
T Consensus       517 lq~~~wf~~G~~ALq-lek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~  573 (777)
T KOG1128|consen  517 LQLGTWFGLGCAALQ-LEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAF  573 (777)
T ss_pred             cchhHHHhccHHHHH-HhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHH
Confidence            999999999988887 678999999999999999999999999999999999988887

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.33  E-value=1.1e-06  Score=84.56  Aligned_cols=111  Identities=13%  Similarity=0.053  Sum_probs=95.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHH------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVL------------ANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG----NVLSMYGD  197 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al------------~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da----~al~nla~  197 (266)
                      .+.++|+.+|+++|.++|++..+-            .+-|.-++ ..|.|.+|.++|..||.++|++.    ..|.|.+.
T Consensus       217 ~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~f-k~G~y~~A~E~Yteal~idP~n~~~naklY~nra~  295 (486)
T KOG0550|consen  217 DNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAF-KNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRAL  295 (486)
T ss_pred             cchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHh-hccchhHHHHHHHHhhcCCccccchhHHHHHHhHh
Confidence            688999999999999999986433            33344344 47899999999999999999864    56788888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536          198 LIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       198 ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      +... .|+..+|+.-++.|+.++|....++..-|.++...+++++|.+-
T Consensus       296 v~~r-Lgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d  343 (486)
T KOG0550|consen  296 VNIR-LGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVED  343 (486)
T ss_pred             hhcc-cCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7766 78999999999999999999999999999999999999999953

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.33  E-value=2.6e-06  Score=88.75  Aligned_cols=124  Identities=12%  Similarity=0.059  Sum_probs=107.7

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----------
Q 024536          132 SGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI----------  201 (266)
Q Consensus       132 ~~~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~----------  201 (266)
                      ++++.+.|..+|-++++++|..+.++..+|.++.... |...|..||++|.++||.+++++...+..+.+          
T Consensus       470 ~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~-Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I  548 (1238)
T KOG1127|consen  470 MRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSD-DMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEI  548 (1238)
T ss_pred             hhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHH
Confidence            3466899999999999999999999999999887655 89999999999999999999888766654421          


Q ss_pred             -------------------------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccccccccccCCCC
Q 024536          202 -------------------------NHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDDQETCASQP  256 (266)
Q Consensus       202 -------------------------~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~~~~~~~~~  256 (266)
                                               ..+++-.|+..|+-|++.+|.|...|..+|.+|...|++.-|+++++..+.+-|.
T Consensus       549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~  628 (1238)
T KOG1127|consen  549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL  628 (1238)
T ss_pred             HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH
Confidence                                     0357888999999999999999999999999999999999999998887777664

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.32  E-value=4.2e-06  Score=68.90  Aligned_cols=81  Identities=15%  Similarity=0.237  Sum_probs=70.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPED---ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAK  210 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~---~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi  210 (266)
                      +++++|...|++++...|+.   +.+.+.+|.++. ..+++++|+..++. +.-.+-.+.++...|.++.. +|++++|+
T Consensus        62 g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~-~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~-~g~~~~A~  138 (145)
T PF09976_consen   62 GDYDEAKAALEKALANAPDPELKPLARLRLARILL-QQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLA-QGDYDEAR  138 (145)
T ss_pred             CCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHH-CCCHHHHH
Confidence            68999999999999998776   357888998886 58999999999966 45566678888899999977 89999999


Q ss_pred             HHHHHHH
Q 024536          211 SYFDRAV  217 (266)
Q Consensus       211 ~~~ekAL  217 (266)
                      ..|++||
T Consensus       139 ~~y~~Al  145 (145)
T PF09976_consen  139 AAYQKAL  145 (145)
T ss_pred             HHHHHhC
Confidence            9999985

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.31  E-value=4.6e-07  Score=85.25  Aligned_cols=109  Identities=15%  Similarity=0.085  Sum_probs=86.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|.++|+++++++|.|.++....|.-++ ..++.+-|+.||+|.|..--.+++.+.|+|.+++- .+++|-++..|
T Consensus       304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yf-Y~~~PE~AlryYRRiLqmG~~speLf~NigLCC~y-aqQ~D~~L~sf  381 (478)
T KOG1129|consen  304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYF-YDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLY-AQQIDLVLPSF  381 (478)
T ss_pred             HhHHHHHHHHHHHHhcCCccceeeeeeeeccc-cCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHh-hcchhhhHHHH
Confidence            67888888888888888888888777765443 35778888888888888888888888888887765 67888888888


Q ss_pred             HHHHHhCCC---CHHHHHHHHHHHHHcCCccccc
Q 024536          214 DRAVHSAPD---DCHVLASYARFLWDAGEEEDDD  244 (266)
Q Consensus       214 ekAL~l~P~---da~a~~~lA~ll~~~G~~~eA~  244 (266)
                      +||+...-+   -+++|++++.+.-..|++--|.
T Consensus       382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~  415 (478)
T KOG1129|consen  382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAK  415 (478)
T ss_pred             HHHHhhccCcchhhhhhhccceeEEeccchHHHH
Confidence            888887642   2457888888888888876665

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.31  E-value=1.2e-06  Score=85.22  Aligned_cols=62  Identities=15%  Similarity=0.047  Sum_probs=58.1

Q ss_pred             hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCccccccc
Q 024536          184 AKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHV---LASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       184 ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a---~~~lA~ll~~~G~~~eA~~~  246 (266)
                      .+|+++.+|+|+|.+|+. .|+|++|+.+|++||+++|+++.+   |+++|.+|..+|+.++|++.
T Consensus        70 ~dP~~a~a~~NLG~AL~~-lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~  134 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFS-KGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADC  134 (453)
T ss_pred             CCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            589999999999999987 899999999999999999999865   99999999999999999954

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.29  E-value=3.1e-06  Score=84.06  Aligned_cols=110  Identities=17%  Similarity=0.187  Sum_probs=93.3

Q ss_pred             CCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKA--------YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAK--------PGDGNVLSMYGD  197 (266)
Q Consensus       134 ~~~eeA~~~y~rALel--------~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ld--------P~da~al~nla~  197 (266)
                      +++++|+..|++|+++        .|.-...+.++|.++. ..+++.+|..+|++|+.+-        |.-+.++.++|.
T Consensus       213 g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~-~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~  291 (508)
T KOG1840|consen  213 GRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYR-SLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAV  291 (508)
T ss_pred             ccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            8999999999999999        7777777788998776 6899999999999999853        444577999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCCcccccc
Q 024536          198 LIWINHKDAPRAKSYFDRAVHSAP--------DDCHVLASYARFLWDAGEEEDDDD  245 (266)
Q Consensus       198 ll~~~~gd~deAi~~~ekAL~l~P--------~da~a~~~lA~ll~~~G~~~eA~~  245 (266)
                      +|.. +|++++|..|+++|+++--        +-+..+.+++.++..++++++|+.
T Consensus       292 ly~~-~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~  346 (508)
T KOG1840|consen  292 LYYK-QGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKK  346 (508)
T ss_pred             HHhc-cCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHH
Confidence            8876 8999999999999998742        233457888999999999999983

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.27  E-value=2.7e-06  Score=80.59  Aligned_cols=98  Identities=21%  Similarity=0.151  Sum_probs=87.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +.|++|+.||-++|.++|.|+..+.|.|.+|. ....++.|+.-+..||.+|-....+|...+.+... .|...+|..-|
T Consensus       111 gKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYl-k~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~-Lg~~~EAKkD~  188 (536)
T KOG4648|consen  111 GKYEEAIDCYSTAIAVYPHNPVYHINRALAYL-KQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARES-LGNNMEAKKDC  188 (536)
T ss_pred             cchhHHHHHhhhhhccCCCCccchhhHHHHHH-HHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHH-HhhHHHHHHhH
Confidence            57899999999999999999999999998876 46889999999999999999999999988887766 68899999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHH
Q 024536          214 DRAVHSAPDDCHVLASYARF  233 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~l  233 (266)
                      +++|++.|++-+..-.++.+
T Consensus       189 E~vL~LEP~~~ELkK~~a~i  208 (536)
T KOG4648|consen  189 ETVLALEPKNIELKKSLARI  208 (536)
T ss_pred             HHHHhhCcccHHHHHHHHHh
Confidence            99999999988876666543

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.26  E-value=3.6e-06  Score=82.10  Aligned_cols=123  Identities=20%  Similarity=0.163  Sum_probs=107.8

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--------
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKD--------  205 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd--------  205 (266)
                      ++.++|+.+|.+.-.+--+++.+++.+|.++ +...+..+|+++|.+|..+-|+||.++..+|.+|-+ .||        
T Consensus       538 ~~ldeald~f~klh~il~nn~evl~qianiy-e~led~aqaie~~~q~~slip~dp~ilskl~dlydq-egdksqafq~~  615 (840)
T KOG2003|consen  538 GNLDEALDCFLKLHAILLNNAEVLVQIANIY-ELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQ-EGDKSQAFQCH  615 (840)
T ss_pred             cCHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhc-ccchhhhhhhh
Confidence            8899999999998888889999999999876 467889999999999999999999999999987632 443        


Q ss_pred             --------------------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccccccccccCCCCCC
Q 024536          206 --------------------------APRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDDQETCASQPNI  258 (266)
Q Consensus       206 --------------------------~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~~~~~~~~~~~  258 (266)
                                                .++|+.||++|.-+.|+...+....|.++.+.|+++.|.+.-.+.+.-+|.++
T Consensus       616 ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedl  694 (840)
T KOG2003|consen  616 YDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDL  694 (840)
T ss_pred             hhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccch
Confidence                                      58999999999999999999999999999999999999987666666777665

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.25  E-value=1.1e-05  Score=84.58  Aligned_cols=101  Identities=15%  Similarity=0.176  Sum_probs=80.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------hCCCCHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAIL--------------------AKPGDGNVLS  193 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~--------------------ldP~da~al~  193 (266)
                      +++++|.+.|+++|+++|+|+.+++|||.++.+ . ++++|+.++.+|+.                    .+|++.+.+.
T Consensus       130 g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae-~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~  207 (906)
T PRK14720        130 NENKKLKGVWERLVKADRDNPEIVKKLATSYEE-E-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFL  207 (906)
T ss_pred             CChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-h-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHH
Confidence            789999999999999999999999999998864 4 88899888888876                    4555544422


Q ss_pred             HHHH-------------------HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024536          194 MYGD-------------------LIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWD  236 (266)
Q Consensus       194 nla~-------------------ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~  236 (266)
                      .+-.                   -++...+++++++.+++++|+++|.|..++..++.+|..
T Consensus       208 ~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~  269 (906)
T PRK14720        208 RIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKE  269 (906)
T ss_pred             HHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence            2111                   112335689999999999999999999999999988874

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.24  E-value=2.6e-06  Score=56.68  Aligned_cols=41  Identities=17%  Similarity=0.131  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024536          190 NVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYA  231 (266)
Q Consensus       190 ~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA  231 (266)
                      .++..+|.++.. .|++++|+.+|+++++.+|+|+.++..+|
T Consensus         2 ~~~~~la~~~~~-~G~~~~A~~~~~~~l~~~P~~~~a~~~La   42 (44)
T PF13428_consen    2 AAWLALARAYRR-LGQPDEAERLLRRALALDPDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence            345555555544 56666666666666666666666655554

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.22  E-value=2.2e-05  Score=76.69  Aligned_cols=91  Identities=14%  Similarity=0.045  Sum_probs=76.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      ++.++|++.|++++.++|+.+.++.+||.+|. ..|++++|+.++++.+..+|+|+..|..+|..+.. +|+..+|...+
T Consensus       354 nk~~~A~e~~~kal~l~P~~~~l~~~~a~all-~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~-~g~~~~a~~A~  431 (484)
T COG4783         354 NKAKEAIERLKKALALDPNSPLLQLNLAQALL-KGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAE-LGNRAEALLAR  431 (484)
T ss_pred             CChHHHHHHHHHHHhcCCCccHHHHHHHHHHH-hcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHH-hCchHHHHHHH
Confidence            68899999999999999999999999999987 58999999999999999999999999999998865 66666666665


Q ss_pred             HHHHHhCCCCHHH
Q 024536          214 DRAVHSAPDDCHV  226 (266)
Q Consensus       214 ekAL~l~P~da~a  226 (266)
                      ..+..++-+.-.+
T Consensus       432 AE~~~~~G~~~~A  444 (484)
T COG4783         432 AEGYALAGRLEQA  444 (484)
T ss_pred             HHHHHhCCCHHHH
Confidence            5555555443333

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.22  E-value=1.3e-06  Score=55.59  Aligned_cols=30  Identities=20%  Similarity=0.253  Sum_probs=11.9

Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 024536          179 GRAILAKPGDGNVLSMYGDLIWINHKDAPRA  209 (266)
Q Consensus       179 erAL~ldP~da~al~nla~ll~~~~gd~deA  209 (266)
                      ++||+++|+|+.+|++||.++.. .|++++|
T Consensus         3 ~kAie~~P~n~~a~~nla~~~~~-~g~~~~A   32 (34)
T PF13431_consen    3 KKAIELNPNNAEAYNNLANLYLN-QGDYEEA   32 (34)
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHH-CcCHHhh
Confidence            34444444444444444433332 3344433

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.20  E-value=2.2e-05  Score=70.90  Aligned_cols=111  Identities=18%  Similarity=0.088  Sum_probs=88.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHH-----
Q 024536          134 KESESMDVYYQEMIKAYPEDALVL---ANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG---NVLSMYGDLIWIN-----  202 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al---~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da---~al~nla~ll~~~-----  202 (266)
                      +++++|++.|++++...|..+.+.   +++|.+++ ..+++++|..+|++.|+..|+++   .+++.+|.+....     
T Consensus        46 g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy-~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~  124 (243)
T PRK10866         46 GNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYY-KNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSAL  124 (243)
T ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhh
Confidence            789999999999999999998655   88888877 58999999999999999999886   5677777553221     


Q ss_pred             ---------cCC---HHHHHHHHHHHHHhCCCCHHH-----------------HHHHHHHHHHcCCcccccc
Q 024536          203 ---------HKD---APRAKSYFDRAVHSAPDDCHV-----------------LASYARFLWDAGEEEDDDD  245 (266)
Q Consensus       203 ---------~gd---~deAi~~~ekAL~l~P~da~a-----------------~~~lA~ll~~~G~~~eA~~  245 (266)
                               ..|   ..+|+..|++.|+.-|+...+                 -...|.+|++.|.+..|+.
T Consensus       125 ~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~  196 (243)
T PRK10866        125 QGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVN  196 (243)
T ss_pred             hhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence                     012   357889999999999997653                 2356778888888888773

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.20  E-value=6.3e-06  Score=82.78  Aligned_cols=110  Identities=16%  Similarity=0.125  Sum_probs=100.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      ++|.+.+++.+..|+-.|.+++.+...|..|. ..|+-++|..+.+.++..|+.....|..+|.++. ..++|++|+.+|
T Consensus        21 kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~-~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R-~dK~Y~eaiKcy   98 (700)
T KOG1156|consen   21 KQYKKGLKLIKQILKKFPEHGESLAMKGLTLN-CLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR-SDKKYDEAIKCY   98 (700)
T ss_pred             HHHHhHHHHHHHHHHhCCccchhHHhccchhh-cccchHHHHHHHHHHhccCcccchhHHHHHHHHh-hhhhHHHHHHHH
Confidence            68899999999999999999999999998886 5799999999999999999999999999997664 478999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCcccccc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDD  245 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~  245 (266)
                      +.|+.++|+|-.++..++.+..++++++-..+
T Consensus        99 ~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~  130 (700)
T KOG1156|consen   99 RNALKIEKDNLQILRDLSLLQIQMRDYEGYLE  130 (700)
T ss_pred             HHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHH
Confidence            99999999999999999999999999877663

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.19  E-value=1.5e-06  Score=55.28  Aligned_cols=34  Identities=15%  Similarity=0.388  Sum_probs=32.1

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccc
Q 024536          212 YFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDD  245 (266)
Q Consensus       212 ~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~  245 (266)
                      +|+|||+++|+++.++++||.+|...|+.++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            4899999999999999999999999999999974

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.16  E-value=2.3e-05  Score=69.71  Aligned_cols=102  Identities=20%  Similarity=0.217  Sum_probs=86.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDA-----LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPR  208 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~-----~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~de  208 (266)
                      ++|++|..-|+.||++-|.-+     .+|.|.|.++. ..+.++.|+.-+-+||+++|.+-.++...|.+|.+ ...|++
T Consensus       109 gdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~i-Kl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek-~ek~ee  186 (271)
T KOG4234|consen  109 GDYEEANSKYQEALESCPSTSTEERSILYSNRAAALI-KLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK-MEKYEE  186 (271)
T ss_pred             ccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHH-HhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh-hhhHHH
Confidence            489999999999999999865     56677777665 46889999999999999999999999988988766 588999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 024536          209 AKSYFDRAVHSAPDDCHVLASYARFLWDA  237 (266)
Q Consensus       209 Ai~~~ekAL~l~P~da~a~~~lA~ll~~~  237 (266)
                      |+.-|++.++++|..-++.-..+.+--..
T Consensus       187 aleDyKki~E~dPs~~ear~~i~rl~~~i  215 (271)
T KOG4234|consen  187 ALEDYKKILESDPSRREAREAIARLPPKI  215 (271)
T ss_pred             HHHHHHHHHHhCcchHHHHHHHHhcCHHH
Confidence            99999999999999888776666544333

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.14  E-value=2.2e-05  Score=73.87  Aligned_cols=109  Identities=16%  Similarity=0.116  Sum_probs=85.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDAL-----VLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPR  208 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~-----al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~de  208 (266)
                      .++++|+..-++.+.+.|+.-.     .+--||..+. ...+.++|...+++|+..||.+..+=..+|.+... +|+|++
T Consensus       155 reW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~-~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~-~g~y~~  232 (389)
T COG2956         155 REWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL-ASSDVDRARELLKKALQADKKCVRASIILGRVELA-KGDYQK  232 (389)
T ss_pred             hHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHh-ccchHH
Confidence            6788888888888888877642     2233444332 35788899999999999999999888888988866 889999


Q ss_pred             HHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCccccc
Q 024536          209 AKSYFDRAVHSAPDD-CHVLASYARFLWDAGEEEDDD  244 (266)
Q Consensus       209 Ai~~~ekAL~l~P~d-a~a~~~lA~ll~~~G~~~eA~  244 (266)
                      |++.++++++.||+. +++...|..+|.+.|+.++.+
T Consensus       233 AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~  269 (389)
T COG2956         233 AVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGL  269 (389)
T ss_pred             HHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            999999999999976 457778888888889888876

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.14  E-value=1e-05  Score=73.24  Aligned_cols=87  Identities=21%  Similarity=0.114  Sum_probs=78.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 024536          131 DSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAK  210 (266)
Q Consensus       131 ~~~~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi  210 (266)
                      ...+.|..|+.+|-+||.++|..+..|.|-|.... ...+++.+..-.++|+.++|+...+++.+|.++.+ ...|++|+
T Consensus        21 f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchl-k~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~-s~~~~eaI   98 (284)
T KOG4642|consen   21 FIPKRYDDAIDCYSRAICINPTVASYYTNRALCHL-KLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ-SKGYDEAI   98 (284)
T ss_pred             cchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHH-HhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHh-hccccHHH
Confidence            34578999999999999999999999999998766 47899999999999999999999999999998877 56799999


Q ss_pred             HHHHHHHHh
Q 024536          211 SYFDRAVHS  219 (266)
Q Consensus       211 ~~~ekAL~l  219 (266)
                      ..+++|..+
T Consensus        99 ~~Lqra~sl  107 (284)
T KOG4642|consen   99 KVLQRAYSL  107 (284)
T ss_pred             HHHHHHHHH
Confidence            999999554

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.11  E-value=6.8e-06  Score=54.67  Aligned_cols=43  Identities=19%  Similarity=0.183  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 024536          154 ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGD  197 (266)
Q Consensus       154 ~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~  197 (266)
                      |.+|..+|.++. ..|++++|+++|+++|+.+|+|+.++..+|.
T Consensus         1 p~~~~~la~~~~-~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    1 PAAWLALARAYR-RLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            467889999876 6899999999999999999999999998874

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.10  E-value=7.8e-06  Score=75.07  Aligned_cols=119  Identities=18%  Similarity=0.193  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024536          136 SESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDR  215 (266)
Q Consensus       136 ~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ek  215 (266)
                      .+.|...|.+|++..+-...+|..+|.+-+...++.+.|...|+++++.-|.+...|..|..++.. .+|.+.|..+|++
T Consensus        17 ~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~-~~d~~~aR~lfer   95 (280)
T PF05843_consen   17 IEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK-LNDINNARALFER   95 (280)
T ss_dssp             HHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred             hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-hCcHHHHHHHHHH
Confidence            688999999999777778899999998755445777779999999999999999999999998876 7899999999999


Q ss_pred             HHHhCCCCH---HHHHHHHHHHHHcCCcccccccccccccCCC
Q 024536          216 AVHSAPDDC---HVLASYARFLWDAGEEEDDDDGDDQETCASQ  255 (266)
Q Consensus       216 AL~l~P~da---~a~~~lA~ll~~~G~~~eA~~~~~~~~~~~~  255 (266)
                      ++..-|...   .+|..+..+-...|+.+...++.....+.+|
T Consensus        96 ~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~  138 (280)
T PF05843_consen   96 AISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFP  138 (280)
T ss_dssp             HCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTT
T ss_pred             HHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence            999988765   4788888888888887766655544444443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.06  E-value=1.6e-05  Score=83.03  Aligned_cols=91  Identities=22%  Similarity=0.136  Sum_probs=82.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--HcCCHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI--NHKDAPRAKS  211 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~--~~gd~deAi~  211 (266)
                      ++|++|++..+++|+.+|+|..++.-+|.++....++.++|...|..|.+++|++.-+|-.++.+|..  ..-+++++-.
T Consensus        16 k~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nLye~~~dIl~ld~~~~   95 (1238)
T KOG1127|consen   16 KEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYERYNDILDLDRAAK   95 (1238)
T ss_pred             ccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHHHccchhhhhhHhHH
Confidence            78999999999999999999999999999998666679999999999999999999999999987744  2357899999


Q ss_pred             HHHHHHHhCCCCH
Q 024536          212 YFDRAVHSAPDDC  224 (266)
Q Consensus       212 ~~ekAL~l~P~da  224 (266)
                      +|++++.+.|++.
T Consensus        96 ~yq~~~l~le~q~  108 (1238)
T KOG1127|consen   96 CYQRAVLILENQS  108 (1238)
T ss_pred             HHHHHHHhhhhhh
Confidence            9999999999765

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.06  E-value=1.7e-05  Score=75.27  Aligned_cols=89  Identities=15%  Similarity=0.152  Sum_probs=74.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++..|+..|..|++.||++..+++..|.++. .+|+-..|+.-+.++|++.|+..-+....|.++.. +|.+++|+.-|
T Consensus        52 ~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yL-AmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK-~Gele~A~~DF  129 (504)
T KOG0624|consen   52 GQLSDALTHYHAAVEGDPNNYQAIFRRATVYL-AMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLK-QGELEQAEADF  129 (504)
T ss_pred             hhHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhcCCccchhhHHHHHhcCccHHHHHHHhchhhhh-cccHHHHHHHH
Confidence            57888888888889989988888888887765 57888888888888998888888888888888876 78888898889


Q ss_pred             HHHHHhCCCCH
Q 024536          214 DRAVHSAPDDC  224 (266)
Q Consensus       214 ekAL~l~P~da  224 (266)
                      ++.|..+|.+-
T Consensus       130 ~~vl~~~~s~~  140 (504)
T KOG0624|consen  130 DQVLQHEPSNG  140 (504)
T ss_pred             HHHHhcCCCcc
Confidence            98888888543

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.05  E-value=3.7e-05  Score=67.18  Aligned_cols=110  Identities=19%  Similarity=0.222  Sum_probs=84.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHc----
Q 024536          134 KESESMDVYYQEMIKAYPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG---NVLSMYGDLIWINH----  203 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~---~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da---~al~nla~ll~~~~----  203 (266)
                      +++.+|+..|++++...|..+   .+++.+|.+++ ..+++++|...|++.+...|+++   .+++..|.+.+...    
T Consensus        19 g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y-~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~   97 (203)
T PF13525_consen   19 GDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYY-KQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGIL   97 (203)
T ss_dssp             T-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccch
Confidence            689999999999999999864   68888998887 58999999999999999999976   57888887765432    


Q ss_pred             ------CCHHHHHHHHHHHHHhCCCCHHH-----------------HHHHHHHHHHcCCccccc
Q 024536          204 ------KDAPRAKSYFDRAVHSAPDDCHV-----------------LASYARFLWDAGEEEDDD  244 (266)
Q Consensus       204 ------gd~deAi~~~ekAL~l~P~da~a-----------------~~~lA~ll~~~G~~~eA~  244 (266)
                            ....+|+..|+..+..-|++..+                 -...|.+|++.|.+..|+
T Consensus        98 ~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~  161 (203)
T PF13525_consen   98 RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAI  161 (203)
T ss_dssp             -TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHH
T ss_pred             hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence                  22468999999999999997654                 234577888888888777

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.05  E-value=1.9e-05  Score=76.25  Aligned_cols=110  Identities=15%  Similarity=0.200  Sum_probs=80.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH---------------------------------HcCCHHHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKE---------------------------------IRGDFVKAEEYCGR  180 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~---------------------------------~~gd~e~A~~~~er  180 (266)
                      |++++|+..|.++.-+||.+...+--||.+|..                                 ..+++..|+.+-++
T Consensus       246 Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK  325 (564)
T KOG1174|consen  246 GDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEK  325 (564)
T ss_pred             cCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHH
Confidence            677899999999999999988888777765531                                 12356667777777


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536          181 AILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDD  244 (266)
Q Consensus       181 AL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~  244 (266)
                      +|..+|.+..++..-|.++.+ .++.++|+-.|+.|+.+.|-+-+.+..+-..|+..+++.||.
T Consensus       326 ~I~~~~r~~~alilKG~lL~~-~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~  388 (564)
T KOG1174|consen  326 CIDSEPRNHEALILKGRLLIA-LERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEAN  388 (564)
T ss_pred             HhccCcccchHHHhccHHHHh-ccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHH
Confidence            777777777777777766655 566777777777777777777777777777777777777766

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.05  E-value=1.8e-05  Score=73.44  Aligned_cols=110  Identities=11%  Similarity=0.015  Sum_probs=87.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIR-GDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY  212 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~-gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~  212 (266)
                      ++++.|.+.++++-+.+.+.......-|++-.... ..+.+|.-+|+......+.++..++.+|.+... +|++++|+..
T Consensus       145 ~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~-~~~~~eAe~~  223 (290)
T PF04733_consen  145 NRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ-LGHYEEAEEL  223 (290)
T ss_dssp             T-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHH-CT-HHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH-hCCHHHHHHH
Confidence            78899999999999988887666655555443222 358999999999777778899999999988766 8999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536          213 FDRAVHSAPDDCHVLASYARFLWDAGEEEDDD  244 (266)
Q Consensus       213 ~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~  244 (266)
                      +++|+..+|+++.++.+++.+....|+..++.
T Consensus       224 L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~  255 (290)
T PF04733_consen  224 LEEALEKDPNDPDTLANLIVCSLHLGKPTEAA  255 (290)
T ss_dssp             HHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHH
T ss_pred             HHHHHHhccCCHHHHHHHHHHHHHhCCChhHH
Confidence            99999999999999999999999999985544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.04  E-value=7.3e-05  Score=68.49  Aligned_cols=92  Identities=16%  Similarity=0.196  Sum_probs=72.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHH
Q 024536          134 KESESMDVYYQEMIKAYPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD---GNVLSMYGDLIWINHKDAP  207 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~---~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d---a~al~nla~ll~~~~gd~d  207 (266)
                      ++|..|+..|+.-|...|+.+   .+++.||..++ .+|+++.|...|.+++.-.|++   |++++-+|.++.+ .++.+
T Consensus       155 gdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y-~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~-l~~~d  232 (262)
T COG1729         155 GDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLY-AQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGR-LGNTD  232 (262)
T ss_pred             CCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHH-hcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH-hcCHH
Confidence            567888888888888888764   67888888777 5788888888888888877765   4678888887766 67788


Q ss_pred             HHHHHHHHHHHhCCCCHHHH
Q 024536          208 RAKSYFDRAVHSAPDDCHVL  227 (266)
Q Consensus       208 eAi~~~ekAL~l~P~da~a~  227 (266)
                      +|...|+++++.=|+...+.
T Consensus       233 ~A~atl~qv~k~YP~t~aA~  252 (262)
T COG1729         233 EACATLQQVIKRYPGTDAAK  252 (262)
T ss_pred             HHHHHHHHHHHHCCCCHHHH
Confidence            88888888888888776654

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.03  E-value=6.5e-05  Score=62.88  Aligned_cols=90  Identities=17%  Similarity=0.146  Sum_probs=75.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHcCCHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG----NVLSMYGDLIWINHKDAPRA  209 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da----~al~nla~ll~~~~gd~deA  209 (266)
                      ++.+.|++.|.++|.+.|..+.+|+|.|..+. .+|+.++|+.-+++|+++.-+..    .++...|.+| +.+|+-++|
T Consensus        57 g~Ld~AlE~F~qal~l~P~raSayNNRAQa~R-Lq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly-Rl~g~dd~A  134 (175)
T KOG4555|consen   57 GDLDGALELFGQALCLAPERASAYNNRAQALR-LQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY-RLLGNDDAA  134 (175)
T ss_pred             cchHHHHHHHHHHHHhcccchHhhccHHHHHH-HcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH-HHhCchHHH
Confidence            47899999999999999999999999999886 58999999999999999976543    4566677655 558999999


Q ss_pred             HHHHHHHHHhCCCCHH
Q 024536          210 KSYFDRAVHSAPDDCH  225 (266)
Q Consensus       210 i~~~ekAL~l~P~da~  225 (266)
                      ..-|+.|.++-...+.
T Consensus       135 R~DFe~AA~LGS~FAr  150 (175)
T KOG4555|consen  135 RADFEAAAQLGSKFAR  150 (175)
T ss_pred             HHhHHHHHHhCCHHHH
Confidence            9999988877665443

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.03  E-value=7.2e-06  Score=77.74  Aligned_cols=94  Identities=18%  Similarity=0.147  Sum_probs=86.1

Q ss_pred             CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 024536          150 YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLAS  229 (266)
Q Consensus       150 ~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~  229 (266)
                      +|.+..-++.+|.-+. ..+++.+|+..|..||+.||++-.+++..|.+|.. .|+-..|+.-+.+.|++.|+...++..
T Consensus        34 ~~advekhlElGk~ll-a~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLA-mGksk~al~Dl~rVlelKpDF~~ARiQ  111 (504)
T KOG0624|consen   34 SPADVEKHLELGKELL-ARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLA-MGKSKAALQDLSRVLELKPDFMAARIQ  111 (504)
T ss_pred             CHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh-hcCCccchhhHHHHHhcCccHHHHHHH
Confidence            4566677888888775 57999999999999999999999999999999877 789999999999999999999999999


Q ss_pred             HHHHHHHcCCcccccc
Q 024536          230 YARFLWDAGEEEDDDD  245 (266)
Q Consensus       230 lA~ll~~~G~~~eA~~  245 (266)
                      -|.+++.+|++++|++
T Consensus       112 Rg~vllK~Gele~A~~  127 (504)
T KOG0624|consen  112 RGVVLLKQGELEQAEA  127 (504)
T ss_pred             hchhhhhcccHHHHHH
Confidence            9999999999999994

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.03  E-value=1.2e-05  Score=77.54  Aligned_cols=110  Identities=13%  Similarity=0.082  Sum_probs=94.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH------------HHHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNV------------LSMYGDLIWI  201 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~a------------l~nla~ll~~  201 (266)
                      +++++|...--..+++++.+.++++-.|.+++ ...+.++|..+|+++|.++|++..+            +..-|.-.++
T Consensus       183 ~~~~~a~~ea~~ilkld~~n~~al~vrg~~~y-y~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk  261 (486)
T KOG0550|consen  183 GDYDEAQSEAIDILKLDATNAEALYVRGLCLY-YNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFK  261 (486)
T ss_pred             ccchhHHHHHHHHHhcccchhHHHHhcccccc-cccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhh
Confidence            78899999999999999999999999988877 5788999999999999999998654            3333444445


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCcccccc
Q 024536          202 NHKDAPRAKSYFDRAVHSAPDDC----HVLASYARFLWDAGEEEDDDD  245 (266)
Q Consensus       202 ~~gd~deAi~~~ekAL~l~P~da----~a~~~lA~ll~~~G~~~eA~~  245 (266)
                       .|.+.+|.++|..||.++|++.    ..+.+.|.+....|+..+|+.
T Consensus       262 -~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eais  308 (486)
T KOG0550|consen  262 -NGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAIS  308 (486)
T ss_pred             -ccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhh
Confidence             6999999999999999999864    357789999999999999993

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.03  E-value=3.5e-05  Score=77.93  Aligned_cols=109  Identities=17%  Similarity=0.178  Sum_probs=101.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +..++|+.+++++|+..|+...+|..+|.++. .+++.+.|...|...++.=|+....|..++.+- +..+..-+|...+
T Consensus       665 d~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e-~~~~ie~aR~aY~~G~k~cP~~ipLWllLakle-Ek~~~~~rAR~il  742 (913)
T KOG0495|consen  665 DNVEEALRLLEEALKSFPDFHKLWLMLGQIEE-QMENIEMAREAYLQGTKKCPNSIPLWLLLAKLE-EKDGQLVRARSIL  742 (913)
T ss_pred             hhHHHHHHHHHHHHHhCCchHHHHHHHhHHHH-HHHHHHHHHHHHHhccccCCCCchHHHHHHHHH-HHhcchhhHHHHH
Confidence            67899999999999999999999999999875 689999999999999999999999999999865 4478999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDD  244 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~  244 (266)
                      +++...||.++..|...-.+-++.|..+.|.
T Consensus       743 drarlkNPk~~~lwle~Ir~ElR~gn~~~a~  773 (913)
T KOG0495|consen  743 DRARLKNPKNALLWLESIRMELRAGNKEQAE  773 (913)
T ss_pred             HHHHhcCCCcchhHHHHHHHHHHcCCHHHHH
Confidence            9999999999999999999999999998887

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.01  E-value=4.7e-05  Score=73.63  Aligned_cols=88  Identities=18%  Similarity=0.135  Sum_probs=77.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      ++..+|++.+.++|+.+|.++.++...|.+|. .+++++.|+.++++|+.+.|++-..|+.|+.+|.. .||++.|+..+
T Consensus       214 ~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl-~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~-~~d~e~ALlaL  291 (395)
T PF09295_consen  214 NEEVEAIRLLNEALKENPQDSELLNLQAEFLL-SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQ-LGDFENALLAL  291 (395)
T ss_pred             CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh-cCCHHHHHHHH
Confidence            56789999999999999999999999999987 58999999999999999999999999999999876 89999999877


Q ss_pred             HHHHHhCCCC
Q 024536          214 DRAVHSAPDD  223 (266)
Q Consensus       214 ekAL~l~P~d  223 (266)
                      .-+=-..+.+
T Consensus       292 Ns~Pm~~~~~  301 (395)
T PF09295_consen  292 NSCPMLTYKD  301 (395)
T ss_pred             hcCcCCCCcc
Confidence            7554433333

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.99  E-value=4.3e-05  Score=73.31  Aligned_cols=88  Identities=13%  Similarity=0.119  Sum_probs=77.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++.+|+..+.++|+++|+|..+++.-|.++. ..++|+.|...|++|++++|+|..+...+..+....+...++..++|
T Consensus       271 ~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l-~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y  349 (397)
T KOG0543|consen  271 KEYKEAIESCNKVLELDPNNVKALYRRGQALL-ALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMY  349 (397)
T ss_pred             hhHHHHHHHHHHHHhcCCCchhHHHHHHHHHH-hhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999886 58999999999999999999999999888877655555556668888


Q ss_pred             HHHHHhCCC
Q 024536          214 DRAVHSAPD  222 (266)
Q Consensus       214 ekAL~l~P~  222 (266)
                      .+.+..-+.
T Consensus       350 ~~mF~k~~~  358 (397)
T KOG0543|consen  350 ANMFAKLAE  358 (397)
T ss_pred             HHHhhcccc
Confidence            888877664

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.97  E-value=9e-05  Score=65.35  Aligned_cols=109  Identities=17%  Similarity=0.190  Sum_probs=93.1

Q ss_pred             CCHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHH
Q 024536          134 KESESMDVYYQEMIK-AYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG--DGNVLSMYGDLIWINHKDAPRAK  210 (266)
Q Consensus       134 ~~~eeA~~~y~rALe-l~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~--da~al~nla~ll~~~~gd~deAi  210 (266)
                      +++.+|..+|++++. +.-+++..+..++..+. ..+++.+|...+++..+.+|.  .|..+..+|.++.. +|+++.|+
T Consensus       103 Gr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqf-a~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa-~g~~a~Ae  180 (251)
T COG4700         103 GRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQF-AIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAA-QGKYADAE  180 (251)
T ss_pred             hhhhhhHHHHHHHhccccCCCHHHHHHHHHHHH-hhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHh-cCCchhHH
Confidence            688999999998876 46678888888888876 468999999999999999886  46677778888866 89999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccc
Q 024536          211 SYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDD  245 (266)
Q Consensus       211 ~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~  245 (266)
                      ..|+.|+..-|+ +.+...|+.++..+|+.++|.+
T Consensus       181 safe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~a  214 (251)
T COG4700         181 SAFEVAISYYPG-PQARIYYAEMLAKQGRLREANA  214 (251)
T ss_pred             HHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHH
Confidence            999999999885 5788899999999999888874

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.96  E-value=0.00014  Score=61.02  Aligned_cols=92  Identities=18%  Similarity=0.147  Sum_probs=73.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCC--
Q 024536          134 KESESMDVYYQEMIKAYPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG---NVLSMYGDLIWINHKD--  205 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~---~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da---~al~nla~ll~~~~gd--  205 (266)
                      ++|++|++.|+......|..+   .+...++.+++ ..+++++|...+++-|+++|.++   .+++..|...+. +.+  
T Consensus        24 ~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy-~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~-~~~~~  101 (142)
T PF13512_consen   24 GNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYY-KQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE-QDEGS  101 (142)
T ss_pred             CCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH-HhhhH
Confidence            688999999999999988765   56677777776 57899999999999999998886   466677766655 333  


Q ss_pred             -------------HHHHHHHHHHHHHhCCCCHHHH
Q 024536          206 -------------APRAKSYFDRAVHSAPDDCHVL  227 (266)
Q Consensus       206 -------------~deAi~~~ekAL~l~P~da~a~  227 (266)
                                   ...|...|++.|..-|++..+-
T Consensus       102 ~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~  136 (142)
T PF13512_consen  102 LQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAA  136 (142)
T ss_pred             HhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence                         6788899999999999887654

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=97.96  E-value=3.7e-05  Score=79.52  Aligned_cols=97  Identities=21%  Similarity=0.189  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 024536          158 ANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDA  237 (266)
Q Consensus       158 ~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~  237 (266)
                      ...|+.++ ++|++++|+..+..+|+++|.++.+|+.+|.++.+ +||.++|...+-.|..++|.|...|..++....++
T Consensus       143 l~eAN~lf-arg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEq-rGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~  220 (895)
T KOG2076|consen  143 LGEANNLF-ARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQ-RGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQL  220 (895)
T ss_pred             HHHHHHHH-HhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH-cccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhc
Confidence            34455665 57999999999999999999999999999998855 89999999999999999999999999999999999


Q ss_pred             CCcccccccccccccCCCC
Q 024536          238 GEEEDDDDGDDQETCASQP  256 (266)
Q Consensus       238 G~~~eA~~~~~~~~~~~~~  256 (266)
                      |...+|+=.....-+.-|+
T Consensus       221 ~~i~qA~~cy~rAI~~~p~  239 (895)
T KOG2076|consen  221 GNINQARYCYSRAIQANPS  239 (895)
T ss_pred             ccHHHHHHHHHHHHhcCCc
Confidence            9999988433333333343

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.94  E-value=5.8e-05  Score=75.33  Aligned_cols=86  Identities=23%  Similarity=0.240  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 024536          158 ANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDA  237 (266)
Q Consensus       158 ~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~  237 (266)
                      +.+|..+. ..|++++|+.+.++||...|..++.|..-|.++-+ .|++++|..+++.|..+|+.|-.+-...+..+++.
T Consensus       198 ~~lAqhyd-~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh-~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa  275 (517)
T PF12569_consen  198 YFLAQHYD-YLGDYEKALEYIDKAIEHTPTLVELYMTKARILKH-AGDLKEAAEAMDEARELDLADRYINSKCAKYLLRA  275 (517)
T ss_pred             HHHHHHHH-HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHC
Confidence            45576553 57999999999999999999999999999999866 89999999999999999999999999999999999


Q ss_pred             CCcccccc
Q 024536          238 GEEEDDDD  245 (266)
Q Consensus       238 G~~~eA~~  245 (266)
                      |+.++|++
T Consensus       276 ~~~e~A~~  283 (517)
T PF12569_consen  276 GRIEEAEK  283 (517)
T ss_pred             CCHHHHHH
Confidence            99999995

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.93  E-value=2.4e-05  Score=70.37  Aligned_cols=93  Identities=15%  Similarity=0.092  Sum_probs=84.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 024536          131 DSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAK  210 (266)
Q Consensus       131 ~~~~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi  210 (266)
                      |+.|-+.-|.-.|.+++++.|+-|.+++.+|..+. ..|+++.|.+.|.-.+++||..-.++.|.|+.++- .|++.-|.
T Consensus        76 DSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~-~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY-~gR~~LAq  153 (297)
T COG4785          76 DSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-GGRYKLAQ  153 (297)
T ss_pred             hhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHH-hcccchHHHHHhhhHhccCCcchHHHhccceeeee-cCchHhhH
Confidence            45566778888999999999999999999998776 57999999999999999999999999999988875 79999999


Q ss_pred             HHHHHHHHhCCCCHH
Q 024536          211 SYFDRAVHSAPDDCH  225 (266)
Q Consensus       211 ~~~ekAL~l~P~da~  225 (266)
                      .-+.+--..||+||.
T Consensus       154 ~d~~~fYQ~D~~DPf  168 (297)
T COG4785         154 DDLLAFYQDDPNDPF  168 (297)
T ss_pred             HHHHHHHhcCCCChH
Confidence            999999999999985

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.91  E-value=3.1e-05  Score=47.71  Aligned_cols=34  Identities=18%  Similarity=0.377  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 024536          189 GNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (266)
Q Consensus       189 a~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~d  223 (266)
                      |.+++.+|.+++. .|++++|+.+|++|++++|+|
T Consensus         1 a~~~~~lg~~~~~-~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQ-LGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHCcCC
Confidence            3556667766655 667777777777777777764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.87  E-value=0.0005  Score=54.22  Aligned_cols=109  Identities=24%  Similarity=0.313  Sum_probs=58.3

Q ss_pred             CCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHH
Q 024536          134 KESESMDVYYQEMIKAYP---EDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG-DGNVLSMYGDLIWINHKDAPRA  209 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P---~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~-da~al~nla~ll~~~~gd~deA  209 (266)
                      +++++|..+|.+++..+|   .....+..++..+. ..+++++|...+.+++...+. ...++..++..+.. .+++++|
T Consensus       144 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a  221 (291)
T COG0457         144 GDYEEALELYEKALELDPELNELAEALLALGALLE-ALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK-LGKYEEA  221 (291)
T ss_pred             CCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHH-HhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH-cccHHHH
Confidence            455666666666655555   23333333333322 345566666666666666666 45555555555433 4556666


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536          210 KSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDD  244 (266)
Q Consensus       210 i~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~  244 (266)
                      +.++.+++...|.....+..++..+...++.+++.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (291)
T COG0457         222 LEYYEKALELDPDNAEALYNLALLLLELGRYEEAL  256 (291)
T ss_pred             HHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHH
Confidence            66666666666654445555555555444444444

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.85  E-value=3.2e-05  Score=48.07  Aligned_cols=32  Identities=25%  Similarity=0.401  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 024536          190 NVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPD  222 (266)
Q Consensus       190 ~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~  222 (266)
                      .+|+++|.++.. .+++++|+.+|++||+++|+
T Consensus         2 ~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQ-LGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHH-hCCchHHHHHHHHHHHHCcC
Confidence            456666666544 56666666666666666665

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.82  E-value=7.5e-05  Score=62.48  Aligned_cols=88  Identities=18%  Similarity=0.223  Sum_probs=75.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHH
Q 024536          161 AKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD----CHVLASYARFLWD  236 (266)
Q Consensus       161 A~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~d----a~a~~~lA~ll~~  236 (266)
                      |.++. ..|+++.|++.|.+||.+-|..+.+|+|.+..+. .+++.++|+.-+++|+++.-+.    +.++..-|.+|..
T Consensus        50 ~vala-E~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~R-Lq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl  127 (175)
T KOG4555|consen   50 AIALA-EAGDLDGALELFGQALCLAPERASAYNNRAQALR-LQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL  127 (175)
T ss_pred             HHHHH-hccchHHHHHHHHHHHHhcccchHhhccHHHHHH-HcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence            33444 3699999999999999999999999999999884 5899999999999999998765    3467888999999


Q ss_pred             cCCccccccccccc
Q 024536          237 AGEEEDDDDGDDQE  250 (266)
Q Consensus       237 ~G~~~eA~~~~~~~  250 (266)
                      .|+.++|..-++..
T Consensus       128 ~g~dd~AR~DFe~A  141 (175)
T KOG4555|consen  128 LGNDDAARADFEAA  141 (175)
T ss_pred             hCchHHHHHhHHHH
Confidence            99999998655433

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.80  E-value=0.00016  Score=69.24  Aligned_cols=108  Identities=19%  Similarity=0.161  Sum_probs=92.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|.+....+++..-+.- +...++. +  .-++...=++..++.++..|++|..+..+|.+++. .+.+.+|..+|
T Consensus       277 ~~~~~A~~~i~~~Lk~~~D~~-L~~~~~~-l--~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k-~~~w~kA~~~l  351 (400)
T COG3071         277 GDHDEAQEIIEDALKRQWDPR-LCRLIPR-L--RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALK-NKLWGKASEAL  351 (400)
T ss_pred             CChHHHHHHHHHHHHhccChh-HHHHHhh-c--CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHH-hhHHHHHHHHH
Confidence            788999999999999877665 3333332 2  35888999999999999999999999999999877 78999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCcccccccc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGD  247 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~  247 (266)
                      +.|++..|.. ..+..+|.++.++|+.++|.++.
T Consensus       352 eaAl~~~~s~-~~~~~la~~~~~~g~~~~A~~~r  384 (400)
T COG3071         352 EAALKLRPSA-SDYAELADALDQLGEPEEAEQVR  384 (400)
T ss_pred             HHHHhcCCCh-hhHHHHHHHHHHcCChHHHHHHH
Confidence            9999999854 66788999999999999999763

>PLN03077 Protein ECB2; Provisional

Probab=97.79  E-value=0.00012  Score=76.38  Aligned_cols=110  Identities=13%  Similarity=0.105  Sum_probs=84.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDA--LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS  211 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~--~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~  211 (266)
                      +..++|..+|+.+.+..+-.|  ..|..+..+|. ..|++++|++++++. .+.|+ +.+|..+-..+. ..++.+.|+.
T Consensus       603 g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~-r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~-~~~~~e~~e~  678 (857)
T PLN03077        603 GMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLG-RAGKLTEAYNFINKM-PITPD-PAVWGALLNACR-IHRHVELGEL  678 (857)
T ss_pred             ChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH-hCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHH-HcCChHHHHH
Confidence            567888888888875543333  45555666554 578888898888875 35665 556666655553 4789999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccccc
Q 024536          212 YFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGD  247 (266)
Q Consensus       212 ~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~  247 (266)
                      ..+++++++|+++..+..++++|...|++++|.++.
T Consensus       679 ~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr  714 (857)
T PLN03077        679 AAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVR  714 (857)
T ss_pred             HHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHH
Confidence            999999999999999999999999999999999653

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=97.78  E-value=8e-05  Score=69.97  Aligned_cols=65  Identities=22%  Similarity=0.333  Sum_probs=50.7

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 024536          167 IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYAR  232 (266)
Q Consensus       167 ~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~  232 (266)
                      ..|+.++|..+|++|++++|.+++++..+|.+... .+++-+|-.||-||+.++|.+.+++.+-++
T Consensus       128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~-~~~iv~ADq~Y~~ALtisP~nseALvnR~R  192 (472)
T KOG3824|consen  128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREM-HNEIVEADQCYVKALTISPGNSEALVNRAR  192 (472)
T ss_pred             hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHh-hhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence            35778888888888888888888888888877644 677888888888888888888877665543

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.78  E-value=6.8e-05  Score=69.54  Aligned_cols=92  Identities=17%  Similarity=0.182  Sum_probs=76.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH-HHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDA-PRAKSY  212 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~-deAi~~  212 (266)
                      +.+.+|.-.|++..+..+..+.+++.+|.+.. .+|++++|+..+++|+..+|++++++.|+..+... .|+. +.+.++
T Consensus       181 e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l-~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~-~gk~~~~~~~~  258 (290)
T PF04733_consen  181 EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHL-QLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLH-LGKPTEAAERY  258 (290)
T ss_dssp             TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHH-HCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHH-TT-TCHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH-hCCChhHHHHH
Confidence            46789999999988888899999999998765 68999999999999999999999999999877665 5665 788999


Q ss_pred             HHHHHHhCCCCHHHH
Q 024536          213 FDRAVHSAPDDCHVL  227 (266)
Q Consensus       213 ~ekAL~l~P~da~a~  227 (266)
                      +.+....+|+++.+.
T Consensus       259 l~qL~~~~p~h~~~~  273 (290)
T PF04733_consen  259 LSQLKQSNPNHPLVK  273 (290)
T ss_dssp             HHHCHHHTTTSHHHH
T ss_pred             HHHHHHhCCCChHHH
Confidence            999999999998764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.78  E-value=0.00024  Score=66.92  Aligned_cols=108  Identities=13%  Similarity=0.098  Sum_probs=89.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCCHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD-GNVLSMYGDLIWINHKDAPRAKSY  212 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d-a~al~nla~ll~~~~gd~deAi~~  212 (266)
                      .++++|...+.+|++.||+..-+-..+|.+.. ..|+|++|.+.++++++.||+. +++.-.+..+|.+ .|+.++.+.+
T Consensus       194 ~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~-~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~-lg~~~~~~~f  271 (389)
T COG2956         194 SDVDRARELLKKALQADKKCVRASIILGRVEL-AKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQ-LGKPAEGLNF  271 (389)
T ss_pred             hhHHHHHHHHHHHHhhCccceehhhhhhHHHH-hccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH-hCCHHHHHHH
Confidence            68899999999999999999999999999876 6899999999999999999986 5677777777755 7999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536          213 FDRAVHSAPDDCHVLASYARFLWDAGEEEDDD  244 (266)
Q Consensus       213 ~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~  244 (266)
                      +.++++..++..- ...++.+.....-.++|.
T Consensus       272 L~~~~~~~~g~~~-~l~l~~lie~~~G~~~Aq  302 (389)
T COG2956         272 LRRAMETNTGADA-ELMLADLIELQEGIDAAQ  302 (389)
T ss_pred             HHHHHHccCCccH-HHHHHHHHHHhhChHHHH
Confidence            9999999987643 344555555555555554

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.75  E-value=4.4e-05  Score=69.22  Aligned_cols=94  Identities=11%  Similarity=-0.015  Sum_probs=80.2

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccc-
Q 024536          168 RGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG-  246 (266)
Q Consensus       168 ~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~-  246 (266)
                      ...|..|+.+|-+||.++|..+..|.|.+.++++ .++++.+..-+++|++++|+...+++.++..+.+...+++|+.+ 
T Consensus        23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk-~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~L  101 (284)
T KOG4642|consen   23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLK-LKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVL  101 (284)
T ss_pred             hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHH-hhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHH
Confidence            4678999999999999999999999999999887 68999999999999999999999999999999999999999953 


Q ss_pred             --ccccccCCCCCCCCCC
Q 024536          247 --DDQETCASQPNILPPL  262 (266)
Q Consensus       247 --~~~~~~~~~~~~~~~~  262 (266)
                        .-+-.+-.++||-+++
T Consensus       102 qra~sl~r~~~~~~~~di  119 (284)
T KOG4642|consen  102 QRAYSLLREQPFTFGDDI  119 (284)
T ss_pred             HHHHHHHhcCCCCCcchH
Confidence              2223444455564443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.74  E-value=0.00033  Score=63.24  Aligned_cols=83  Identities=14%  Similarity=-0.035  Sum_probs=65.3

Q ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---H
Q 024536          153 DALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVL---SMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCH---V  226 (266)
Q Consensus       153 ~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al---~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~---a  226 (266)
                      .+..++..|.-+. ..|++++|.+.|++++...|+.+.+.   +++|.++++ .+++++|+.+|++.+++.|+++.   +
T Consensus        31 ~~~~~Y~~A~~~~-~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~-~~~y~~A~~~~e~fi~~~P~~~~~~~a  108 (243)
T PRK10866         31 PPSEIYATAQQKL-QDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK-NADLPLAQAAIDRFIRLNPTHPNIDYV  108 (243)
T ss_pred             CHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence            3444555555444 47999999999999999999998665   788988887 79999999999999999998865   4


Q ss_pred             HHHHHHHHHHc
Q 024536          227 LASYARFLWDA  237 (266)
Q Consensus       227 ~~~lA~ll~~~  237 (266)
                      ++.+|......
T Consensus       109 ~Y~~g~~~~~~  119 (243)
T PRK10866        109 LYMRGLTNMAL  119 (243)
T ss_pred             HHHHHHhhhhc
Confidence            66666554333

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.72  E-value=0.00021  Score=72.47  Aligned_cols=108  Identities=19%  Similarity=0.175  Sum_probs=65.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +-.+.-++++++|+..-|.-..+|..|+.-.+ ..||..+|...+.+|++.+|++-++|...-.+... ..++++|..+|
T Consensus       564 gt~Esl~Allqkav~~~pkae~lwlM~ake~w-~agdv~~ar~il~~af~~~pnseeiwlaavKle~e-n~e~eraR~ll  641 (913)
T KOG0495|consen  564 GTRESLEALLQKAVEQCPKAEILWLMYAKEKW-KAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFE-NDELERARDLL  641 (913)
T ss_pred             CcHHHHHHHHHHHHHhCCcchhHHHHHHHHHH-hcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhc-cccHHHHHHHH
Confidence            34566666777777777777777777776555 35777888888888888888877776543333222 34455555555


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDD  244 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~  244 (266)
                      .||....|. ..+|.-++.+.|.++..++|+
T Consensus       642 akar~~sgT-eRv~mKs~~~er~ld~~eeA~  671 (913)
T KOG0495|consen  642 AKARSISGT-ERVWMKSANLERYLDNVEEAL  671 (913)
T ss_pred             HHHhccCCc-chhhHHHhHHHHHhhhHHHHH
Confidence            555554442 345555555555555555555

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.71  E-value=0.00038  Score=69.57  Aligned_cols=113  Identities=17%  Similarity=0.066  Sum_probs=96.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 024536          131 DSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAK  210 (266)
Q Consensus       131 ~~~~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi  210 (266)
                      +..+++++|+.+.++||+..|..++++..-|.+|. ..|++++|.++++.|-.+|+.|-.+-...+..+.+ .|++++|+
T Consensus       205 d~~g~~~~Al~~Id~aI~htPt~~ely~~KarilK-h~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR-a~~~e~A~  282 (517)
T PF12569_consen  205 DYLGDYEKALEYIDKAIEHTPTLVELYMTKARILK-HAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR-AGRIEEAE  282 (517)
T ss_pred             HHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH-CCCHHHHH
Confidence            34589999999999999999999999999999987 58999999999999999999999888878877665 89999999


Q ss_pred             HHHHHHHHhC--CCC-------HHHHHHHHHHHHHcCCcccccc
Q 024536          211 SYFDRAVHSA--PDD-------CHVLASYARFLWDAGEEEDDDD  245 (266)
Q Consensus       211 ~~~ekAL~l~--P~d-------a~a~~~lA~ll~~~G~~~eA~~  245 (266)
                      ..+..-..-+  |..       .+.....|.++.++|++..|.+
T Consensus       283 ~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk  326 (517)
T PF12569_consen  283 KTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALK  326 (517)
T ss_pred             HHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            9998886655  211       2234578899999999999883

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.70  E-value=0.00099  Score=52.49  Aligned_cols=109  Identities=21%  Similarity=0.224  Sum_probs=78.8

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHcCCHHHHH
Q 024536          135 ESESMDVYYQEMIKAYPEDALVLANYAK-FLKEIRGDFVKAEEYCGRAILAKP---GDGNVLSMYGDLIWINHKDAPRAK  210 (266)
Q Consensus       135 ~~eeA~~~y~rALel~P~~~~al~nlA~-~L~~~~gd~e~A~~~~erAL~ldP---~da~al~nla~ll~~~~gd~deAi  210 (266)
                      .+.+|+..+.+++..++.+......+.. ++. ..++++.|..+|++++..+|   .....+..++..+.. .+++++|+
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~  187 (291)
T COG0457         110 KYEEALELLEKALALDPDPDLAEALLALGALY-ELGDYEEALELYEKALELDPELNELAEALLALGALLEA-LGRYEEAL  187 (291)
T ss_pred             hHHHHHHHHHHHHcCCCCcchHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHH-hcCHHHHH
Confidence            4778888888888887777554444444 343 57888888888888888777   344445555544433 57888888


Q ss_pred             HHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcccccc
Q 024536          211 SYFDRAVHSAPD-DCHVLASYARFLWDAGEEEDDDD  245 (266)
Q Consensus       211 ~~~ekAL~l~P~-da~a~~~lA~ll~~~G~~~eA~~  245 (266)
                      ..+++++...+. ...++..++..+...++.++|..
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  223 (291)
T COG0457         188 ELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALE  223 (291)
T ss_pred             HHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHH
Confidence            888888888888 67788888888888887777764

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.69  E-value=7.7e-05  Score=46.29  Aligned_cols=34  Identities=29%  Similarity=0.339  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 024536          154 ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD  188 (266)
Q Consensus       154 ~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d  188 (266)
                      +.+|+++|.++. ..+++++|+.+|++||+++|++
T Consensus         1 a~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYF-QLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHH-HhCCchHHHHHHHHHHHHCcCC
Confidence            468999999876 6899999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.68  E-value=0.00012  Score=45.06  Aligned_cols=34  Identities=21%  Similarity=0.259  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 024536          154 ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD  188 (266)
Q Consensus       154 ~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d  188 (266)
                      +.+|+++|.+++ ..|++++|+++|++|++++|+|
T Consensus         1 a~~~~~lg~~~~-~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYY-QLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHCcCC
Confidence            568999999887 5899999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.64  E-value=2.1e-05  Score=57.46  Aligned_cols=60  Identities=15%  Similarity=0.242  Sum_probs=48.7

Q ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---C-C---CHHHHHHHHHHHHHcCCccccccc
Q 024536          186 PGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSA---P-D---DCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       186 P~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~---P-~---da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      |+-+.++.++|.+++. .|++++|+.+|++|+.+.   + +   -+.++.++|.++...|++++|++.
T Consensus         2 ~~~a~~~~~la~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~   68 (78)
T PF13424_consen    2 PDTANAYNNLARVYRE-LGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEY   68 (78)
T ss_dssp             HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            3446788999999876 899999999999999762   2 2   245788999999999999999864

...

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.63  E-value=0.00016  Score=66.36  Aligned_cols=97  Identities=22%  Similarity=0.309  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 024536          155 LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFL  234 (266)
Q Consensus       155 ~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll  234 (266)
                      .+|..|..++.. .+..+.|...|++|+...+-...+|..+|.+-+...+|.+.|..+|+++++.-|.+..+|..|..++
T Consensus         2 ~v~i~~m~~~~r-~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l   80 (280)
T PF05843_consen    2 LVWIQYMRFMRR-TEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL   80 (280)
T ss_dssp             HHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-hCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            578888887764 3459999999999997667778999988887666567888899999999999999999999999999


Q ss_pred             HHcCCccccccccccccc
Q 024536          235 WDAGEEEDDDDGDDQETC  252 (266)
Q Consensus       235 ~~~G~~~eA~~~~~~~~~  252 (266)
                      ...++.+.|..+.|..-+
T Consensus        81 ~~~~d~~~aR~lfer~i~   98 (280)
T PF05843_consen   81 IKLNDINNARALFERAIS   98 (280)
T ss_dssp             HHTT-HHHHHHHHHHHCC
T ss_pred             HHhCcHHHHHHHHHHHHH
Confidence            999998888766555433

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.62  E-value=0.0002  Score=62.36  Aligned_cols=69  Identities=20%  Similarity=0.182  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 024536          171 FVKAEEYCGRAILAKPGDGNVLSMYGDLIWINH---------KDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGE  239 (266)
Q Consensus       171 ~e~A~~~~erAL~ldP~da~al~nla~ll~~~~---------gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~  239 (266)
                      ++.|.+.++.+...||.|++++++.|.+|.++.         .-+++|+.=|++||.++|+...++..+|.+|...+.
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~   84 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF   84 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence            588999999999999999999999998886541         347889999999999999999999999999988775

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=97.62  E-value=0.0002  Score=73.12  Aligned_cols=77  Identities=16%  Similarity=0.123  Sum_probs=55.3

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccccc
Q 024536          168 RGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGD  247 (266)
Q Consensus       168 ~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~  247 (266)
                      .|++++|.++++++ ...| +..+|..+...+.. .|+++.|+..+++++.+.|++...+..+..+|...|++++|.++.
T Consensus       475 ~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~-~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~  551 (697)
T PLN03081        475 EGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRI-HKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVV  551 (697)
T ss_pred             cCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHH-cCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHH
Confidence            34555555555442 1223 34456666655544 788899999999999999998888889999999999999999653

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.62  E-value=0.00048  Score=68.02  Aligned_cols=108  Identities=16%  Similarity=0.092  Sum_probs=85.8

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------------C----
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG---------------------D----  188 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~---------------------d----  188 (266)
                      .+..+-+++-++||+++|+.+.+|.-||.   +...-..+|+++|++|++....                     +    
T Consensus       182 Rnp~aRIkaA~eALei~pdCAdAYILLAE---EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~  258 (539)
T PF04184_consen  182 RNPQARIKAAKEALEINPDCADAYILLAE---EEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVL  258 (539)
T ss_pred             CCHHHHHHHHHHHHHhhhhhhHHHhhccc---ccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchh
Confidence            67788899999999999999999988875   2234467788888887763210                     1    


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCcccccc
Q 024536          189 GNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPD--DCHVLASYARFLWDAGEEEDDDD  245 (266)
Q Consensus       189 a~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~--da~a~~~lA~ll~~~G~~~eA~~  245 (266)
                      ..+...+|.++++ .|+.++|++.|+..++..|.  +-.++.++...|++.++++|+..
T Consensus       259 ~y~KrRLAmCark-lGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~  316 (539)
T PF04184_consen  259 VYAKRRLAMCARK-LGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQA  316 (539)
T ss_pred             hhhHHHHHHHHHH-hCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHH
Confidence            2344568888877 79999999999999998885  45589999999999999999984

The molecular function of this protein is uncertain.

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.61  E-value=0.00049  Score=63.10  Aligned_cols=78  Identities=22%  Similarity=0.275  Sum_probs=71.4

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCc
Q 024536          167 IRGDFVKAEEYCGRAILAKPGD---GNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD---CHVLASYARFLWDAGEE  240 (266)
Q Consensus       167 ~~gd~e~A~~~~erAL~ldP~d---a~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~d---a~a~~~lA~ll~~~G~~  240 (266)
                      ..|||..|+..|..-|..-|++   ++++++||.+++. +|++++|..+|.+++.--|+.   +++++-+|..+.+.++.
T Consensus       153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~-qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~  231 (262)
T COG1729         153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYA-QGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNT  231 (262)
T ss_pred             HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHh-cccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCH
Confidence            4699999999999999999987   4789999999988 899999999999999999876   46799999999999999


Q ss_pred             ccccc
Q 024536          241 EDDDD  245 (266)
Q Consensus       241 ~eA~~  245 (266)
                      ++|-.
T Consensus       232 d~A~a  236 (262)
T COG1729         232 DEACA  236 (262)
T ss_pred             HHHHH
Confidence            99984

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.59  E-value=0.00011  Score=71.90  Aligned_cols=109  Identities=17%  Similarity=0.056  Sum_probs=93.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      ..++.|+..|-+||+++|+++..+.|.+.+.. ..+++-.|+.-+.+||+++|....+|+.-|.++.. .+.+.+|...|
T Consensus        18 ~~fd~avdlysKaI~ldpnca~~~anRa~a~l-K~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~-l~~~~~A~~~l   95 (476)
T KOG0376|consen   18 KVFDVAVDLYSKAIELDPNCAIYFANRALAHL-KVESFGGALHDALKAIELDPTYIKAYVRRGTAVMA-LGEFKKALLDL   95 (476)
T ss_pred             chHHHHHHHHHHHHhcCCcceeeechhhhhhe-eechhhhHHHHHHhhhhcCchhhheeeeccHHHHh-HHHHHHHHHHH
Confidence            57999999999999999999999998885443 56899999999999999999999999999888866 68899999999


Q ss_pred             HHHHHhCCCCHHHHHHHHH--HHHHcCCccccc
Q 024536          214 DRAVHSAPDDCHVLASYAR--FLWDAGEEEDDD  244 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~--ll~~~G~~~eA~  244 (266)
                      ++...+.|+++.+...+..  .+....+++.|+
T Consensus        96 ~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai  128 (476)
T KOG0376|consen   96 EKVKKLAPNDPDATRKIDECNKIVSEEKFEKAI  128 (476)
T ss_pred             HHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhcc
Confidence            9999999999998766654  344445677777

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=97.57  E-value=0.0013  Score=65.08  Aligned_cols=95  Identities=14%  Similarity=0.261  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024536          137 ESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRA  216 (266)
Q Consensus       137 eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekA  216 (266)
                      .+-..+|++|+...+.|+.+|.+|..+.. ..+.+.+-...|.+++...|+++..|...|...+...-+.+.|..+|.++
T Consensus        88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~k-k~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrg  166 (568)
T KOG2396|consen   88 NRIVFLYRRATNRFNGDVKLWLSYIAFCK-KKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRG  166 (568)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence            45566999999999999999999988765 45668899999999999999999999988877777555699999999999


Q ss_pred             HHhCCCCHHHHHHHHH
Q 024536          217 VHSAPDDCHVLASYAR  232 (266)
Q Consensus       217 L~l~P~da~a~~~lA~  232 (266)
                      |+.+|+.+..|..|-.
T Consensus       167 LR~npdsp~Lw~eyfr  182 (568)
T KOG2396|consen  167 LRFNPDSPKLWKEYFR  182 (568)
T ss_pred             hhcCCCChHHHHHHHH
Confidence            9999999987655443

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.56  E-value=0.00084  Score=69.86  Aligned_cols=111  Identities=10%  Similarity=0.123  Sum_probs=85.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDA-----LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD------GNVLSMYGDLIWIN  202 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~-----~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d------a~al~nla~ll~~~  202 (266)
                      +++++|..+++++++..|...     .++.++|.++. ..|++++|..++++|+......      ..++.++|.+++. 
T Consensus       466 g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~-~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~-  543 (903)
T PRK04841        466 GDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH-CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA-  543 (903)
T ss_pred             CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH-
Confidence            689999999999999665532     34566776654 5899999999999999864421      2455677877766 


Q ss_pred             cCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCccccccc
Q 024536          203 HKDAPRAKSYFDRAVHSAPD--------DCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       203 ~gd~deAi~~~ekAL~l~P~--------da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      +|++++|+.++++++.+...        ...++..+|.+++..|++++|.+.
T Consensus       544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~  595 (903)
T PRK04841        544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQC  595 (903)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            89999999999999997332        233456788899999999999743

>PLN03218 maturation of RBCL 1; Provisional

Probab=97.49  E-value=0.0013  Score=70.95  Aligned_cols=42  Identities=12%  Similarity=-0.045  Sum_probs=17.6

Q ss_pred             CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcccccc
Q 024536          204 KDAPRAKSYFDRAVHSA-PDDCHVLASYARFLWDAGEEEDDDD  245 (266)
Q Consensus       204 gd~deAi~~~ekAL~l~-P~da~a~~~lA~ll~~~G~~~eA~~  245 (266)
                      |++++|..+|+++++.. +.+...+..+..+|.+.|+.++|.+
T Consensus       663 G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~  705 (1060)
T PLN03218        663 GDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALE  705 (1060)
T ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence            44444444444444332 1233344444444444444444443

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.46  E-value=0.00079  Score=64.01  Aligned_cols=110  Identities=16%  Similarity=0.162  Sum_probs=92.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHHcCCHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILA-KPGD---GNVLSMYGDLIWINHKDAPRA  209 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~l-dP~d---a~al~nla~ll~~~~gd~deA  209 (266)
                      +.+.+|...+.+.|.-.|.+-.++.---.+.. ..|+.+.-...+++.|-. +|+-   ..++..|+..+.+ .|-|++|
T Consensus       117 g~~h~a~~~wdklL~d~PtDlla~kfsh~a~f-y~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E-~g~y~dA  194 (491)
T KOG2610|consen  117 GKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHF-YNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE-CGIYDDA  194 (491)
T ss_pred             ccccHHHHHHHHHHHhCchhhhhhhhhhhHHH-hccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH-hccchhH
Confidence            46678888899999999999887755433332 468888888899999998 7777   5667778877766 7999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccc
Q 024536          210 KSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDD  245 (266)
Q Consensus       210 i~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~  245 (266)
                      ++.-++|+++||.|+.+....+.++-..+++.|+.+
T Consensus       195 Ek~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~e  230 (491)
T KOG2610|consen  195 EKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKE  230 (491)
T ss_pred             HHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHH
Confidence            999999999999999999999999999999999985

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.44  E-value=0.00042  Score=63.40  Aligned_cols=113  Identities=21%  Similarity=0.227  Sum_probs=78.7

Q ss_pred             CCHHHHHHHHHHHHHHCC--CC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC----HHHHHHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYP--ED----ALVLANYAKFLKEIRGDFVKAEEYCGRAILAK--PGD----GNVLSMYGDLIWI  201 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P--~~----~~al~nlA~~L~~~~gd~e~A~~~~erAL~ld--P~d----a~al~nla~ll~~  201 (266)
                      +++++|..+|.+|.++.-  ++    +.++.+.+.++.  ..++++|+.+|++|+.+-  -++    +.++..+|.++..
T Consensus        49 ~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k--~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~  126 (282)
T PF14938_consen   49 KDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYK--KGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEE  126 (282)
T ss_dssp             T-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCC
T ss_pred             hccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence            577888888888866642  22    234455555543  459999999999999962  333    4578888887755


Q ss_pred             Hc-CCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHcCCcccccccccc
Q 024536          202 NH-KDAPRAKSYFDRAVHSAP--DD----CHVLASYARFLWDAGEEEDDDDGDDQ  249 (266)
Q Consensus       202 ~~-gd~deAi~~~ekAL~l~P--~d----a~a~~~lA~ll~~~G~~~eA~~~~~~  249 (266)
                       . +++++|+.+|++|+++--  +.    ...+..+|.++...+++++|++.-+.
T Consensus       127 -~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~  180 (282)
T PF14938_consen  127 -QLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEE  180 (282)
T ss_dssp             -TT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             -HcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence             5 799999999999999832  22    23577999999999999999975443

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.43  E-value=0.0014  Score=57.23  Aligned_cols=82  Identities=17%  Similarity=0.133  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HH
Q 024536          154 ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG---NVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCH---VL  227 (266)
Q Consensus       154 ~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da---~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~---a~  227 (266)
                      +..++..|..+. ..|++++|...|++.+...|..+   .+++.+|.+++. .+++++|+..|++.+...|+++.   ++
T Consensus         5 ~~~lY~~a~~~~-~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~-~~~y~~A~~~~~~fi~~yP~~~~~~~A~   82 (203)
T PF13525_consen    5 AEALYQKALEAL-QQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYK-QGDYEEAIAAYERFIKLYPNSPKADYAL   82 (203)
T ss_dssp             HHHHHHHHHHHH-HCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred             HHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence            456677776665 58999999999999999988764   788899999887 79999999999999999998764   56


Q ss_pred             HHHHHHHHHc
Q 024536          228 ASYARFLWDA  237 (266)
Q Consensus       228 ~~lA~ll~~~  237 (266)
                      +..|..+..+
T Consensus        83 Y~~g~~~~~~   92 (203)
T PF13525_consen   83 YMLGLSYYKQ   92 (203)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            6677666554

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=97.37  E-value=0.0014  Score=67.04  Aligned_cols=111  Identities=12%  Similarity=-0.004  Sum_probs=77.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILA--KPGDGNVLSMYGDLIWINHKDAPRAKS  211 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~l--dP~da~al~nla~ll~~~~gd~deAi~  211 (266)
                      +++++|.+.|+++.   +.+...|+.+...+. ..|++++|..+|++....  .|+ ...+..+..++.+ .+++++|..
T Consensus       273 g~~~~A~~vf~~m~---~~~~vt~n~li~~y~-~~g~~~eA~~lf~~M~~~g~~pd-~~t~~~ll~a~~~-~g~~~~a~~  346 (697)
T PLN03081        273 GDIEDARCVFDGMP---EKTTVAWNSMLAGYA-LHGYSEEALCLYYEMRDSGVSID-QFTFSIMIRIFSR-LALLEHAKQ  346 (697)
T ss_pred             CCHHHHHHHHHhCC---CCChhHHHHHHHHHH-hCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh-ccchHHHHH
Confidence            67888888887663   456777777766654 578888888888888764  343 4456566656655 577788888


Q ss_pred             HHHHHHHhC-CCCHHHHHHHHHHHHHcCCccccccccccc
Q 024536          212 YFDRAVHSA-PDDCHVLASYARFLWDAGEEEDDDDGDDQE  250 (266)
Q Consensus       212 ~~ekAL~l~-P~da~a~~~lA~ll~~~G~~~eA~~~~~~~  250 (266)
                      +++.+++.. +.+..++..+..+|.+.|+.++|.++.+.+
T Consensus       347 i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m  386 (697)
T PLN03081        347 AHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM  386 (697)
T ss_pred             HHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhC
Confidence            887777776 455666777777777777777777665544

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.35  E-value=0.0018  Score=67.35  Aligned_cols=110  Identities=15%  Similarity=0.137  Sum_probs=85.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPED------ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG--------DGNVLSMYGDLI  199 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~------~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~--------da~al~nla~ll  199 (266)
                      +++++|..+|+++++.....      ..++.++|.+++ ..|++++|..++++++.+...        ...++..+|.++
T Consensus       505 G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~-~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  583 (903)
T PRK04841        505 GELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF-AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLL  583 (903)
T ss_pred             CCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence            78999999999999874432      235567777765 589999999999999996321        233455677777


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCcccccc
Q 024536          200 WINHKDAPRAKSYFDRAVHSAPD-----DCHVLASYARFLWDAGEEEDDDD  245 (266)
Q Consensus       200 ~~~~gd~deAi~~~ekAL~l~P~-----da~a~~~lA~ll~~~G~~~eA~~  245 (266)
                      +. .|++++|..++++++.+...     .+.++..++.++...|++++|.+
T Consensus       584 ~~-~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~  633 (903)
T PRK04841        584 WE-WARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARR  633 (903)
T ss_pred             HH-hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            77 69999999999999987432     24456678899999999999974

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.35  E-value=0.0041  Score=50.67  Aligned_cols=49  Identities=18%  Similarity=0.221  Sum_probs=28.6

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024536          168 RGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAV  217 (266)
Q Consensus       168 ~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL  217 (266)
                      .|++++|+.++++++.++|.|-.+|..+-.++.. .|+..+|+.+|++..
T Consensus        75 ~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~-~g~~~~A~~~Y~~~~  123 (146)
T PF03704_consen   75 AGDYEEALRLLQRALALDPYDEEAYRLLMRALAA-QGRRAEALRVYERYR  123 (146)
T ss_dssp             TT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHH-TT-HHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-CcCHHHHHHHHHHHH
Confidence            5666666666666666666666666666555544 566666666666553

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.33  E-value=0.00041  Score=42.77  Aligned_cols=32  Identities=25%  Similarity=0.361  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 024536          190 NVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPD  222 (266)
Q Consensus       190 ~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~  222 (266)
                      .+|+.+|.++.. .|++++|+.+|++|++++|+
T Consensus         2 ~~~~~lg~~y~~-~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQ-LGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHH-TTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCC
Confidence            456666766654 66777777777777777664

...

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.33  E-value=0.0018  Score=63.95  Aligned_cols=110  Identities=23%  Similarity=0.209  Sum_probs=89.3

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHcCCHH
Q 024536          132 SGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD----GNVLSMYGDLIWINHKDAP  207 (266)
Q Consensus       132 ~~~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d----a~al~nla~ll~~~~gd~d  207 (266)
                      ...+.+.|+++++...+..|+.+..++.-|.++. ..|+.++|.++|++|+.....-    .-.++.+++++.. +.+++
T Consensus       245 ~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~-~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~-~~~w~  322 (468)
T PF10300_consen  245 EDVPLEEAEELLEEMLKRYPNSALFLFFEGRLER-LKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF-QHDWE  322 (468)
T ss_pred             cCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH-HchHH
Confidence            4578999999999999999999999999999876 6899999999999999644333    3456678887765 78999


Q ss_pred             HHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCcccc
Q 024536          208 RAKSYFDRAVHSAPDD-CHVLASYARFLWDAGEEEDD  243 (266)
Q Consensus       208 eAi~~~ekAL~l~P~d-a~a~~~lA~ll~~~G~~~eA  243 (266)
                      +|..+|.+.++.+.-. +.+.+..|.++...++.+.+
T Consensus       323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~  359 (468)
T PF10300_consen  323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEA  359 (468)
T ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhh
Confidence            9999999999987643 33455677888888988333

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.32  E-value=0.00036  Score=66.51  Aligned_cols=83  Identities=11%  Similarity=0.009  Sum_probs=73.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 024536          161 AKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEE  240 (266)
Q Consensus       161 A~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~  240 (266)
                      |.-++ .+|.|++|+.||-++|.++|.|+..+.|.|.+|+. .+.|.-|+.-+..||.++-.+.-++..-+.+....|..
T Consensus       104 GN~yF-KQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk-~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~  181 (536)
T KOG4648|consen  104 GNTYF-KQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLK-QKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN  181 (536)
T ss_pred             hhhhh-hccchhHHHHHhhhhhccCCCCccchhhHHHHHHH-HHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence            44444 47999999999999999999999999999999987 67899999999999999998888888888888888888


Q ss_pred             ccccc
Q 024536          241 EDDDD  245 (266)
Q Consensus       241 ~eA~~  245 (266)
                      .+|.+
T Consensus       182 ~EAKk  186 (536)
T KOG4648|consen  182 MEAKK  186 (536)
T ss_pred             HHHHH
Confidence            88774

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.32  E-value=0.00033  Score=63.15  Aligned_cols=89  Identities=16%  Similarity=0.098  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 024536          155 LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFL  234 (266)
Q Consensus       155 ~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll  234 (266)
                      ..++..|.+ +...|-.+-|.--|.+++++.|+-|++++.+|+.+.. .|+++.|.+.|+-.+++||.+-.++.+-|..+
T Consensus        66 ~l~fERGvl-YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~-a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~  143 (297)
T COG4785          66 QLLFERGVL-YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ-AGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL  143 (297)
T ss_pred             HHHHHhcch-hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHh-cccchHHHHHhhhHhccCCcchHHHhccceee
Confidence            344555543 3456777888889999999999999999999977655 89999999999999999999999999999999


Q ss_pred             HHcCCcccccc
Q 024536          235 WDAGEEEDDDD  245 (266)
Q Consensus       235 ~~~G~~~eA~~  245 (266)
                      .--|++.-|.+
T Consensus       144 YY~gR~~LAq~  154 (297)
T COG4785         144 YYGGRYKLAQD  154 (297)
T ss_pred             eecCchHhhHH
Confidence            99999998884

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=97.29  E-value=0.00038  Score=65.54  Aligned_cols=63  Identities=16%  Similarity=0.341  Sum_probs=58.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGD  197 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~  197 (266)
                      +..++|..+|..|++++|+++.++..+|.|.. ..+++-+|..||-+||.++|.+.+++.|.+.
T Consensus       130 Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E-~~~~iv~ADq~Y~~ALtisP~nseALvnR~R  192 (472)
T KOG3824|consen  130 GKLEKAMTLFEHALALAPTNPQILIEMGQFRE-MHNEIVEADQCYVKALTISPGNSEALVNRAR  192 (472)
T ss_pred             cchHHHHHHHHHHHhcCCCCHHHHHHHhHHHH-hhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence            57799999999999999999999999999885 4689999999999999999999999988764

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=97.29  E-value=0.0012  Score=71.49  Aligned_cols=115  Identities=20%  Similarity=0.284  Sum_probs=100.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG--DGNVLSMYGDLIWINHKDAPRAKS  211 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~--da~al~nla~ll~~~~gd~deAi~  211 (266)
                      +.+++|.++|+.+++-.-+...+|..|+.+|. .+.+-++|...++|||..-|.  +-++..-+|.+-+. .||.+++..
T Consensus      1544 ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl-~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk-~GDaeRGRt 1621 (1710)
T KOG1070|consen 1544 EKNDEADELLRLMLKKFGQTRKVWIMYADFLL-RQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK-YGDAERGRT 1621 (1710)
T ss_pred             hcchhHHHHHHHHHHHhcchhhHHHHHHHHHh-cccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh-cCCchhhHH
Confidence            67899999999999999988999999999986 467778899999999999998  77888888887776 799999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccccccc
Q 024536          212 YFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDDQE  250 (266)
Q Consensus       212 ~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~~~  250 (266)
                      +|+-.+...|.-...|..|...-..+++.+.+....|+.
T Consensus      1622 lfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRv 1660 (1710)
T KOG1070|consen 1622 LFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERV 1660 (1710)
T ss_pred             HHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHH
Confidence            999999999999999999998888888777776655543

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.27  E-value=0.0049  Score=59.31  Aligned_cols=110  Identities=18%  Similarity=0.122  Sum_probs=92.8

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG-NVLSMYGDLIWINHKDAPRAKSY  212 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da-~al~nla~ll~~~~gd~deAi~~  212 (266)
                      |+|.+|+++..++-+..+.-..++.--+.+.. .+||++.|-.|..+|-+..+++- .+....+.++.. ++|++.|..-
T Consensus        98 G~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~-qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~-~~d~~aA~~~  175 (400)
T COG3071          98 GDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQ-QRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN-RRDYPAAREN  175 (400)
T ss_pred             CcHHHHHHHHHHhhhcCcchHHHHHHHHHHHH-hcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh-CCCchhHHHH
Confidence            79999999999988877776666666666554 68999999999999999966554 455566777766 8999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCcccccc
Q 024536          213 FDRAVHSAPDDCHVLASYARFLWDAGEEEDDDD  245 (266)
Q Consensus       213 ~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~  245 (266)
                      ..++++..|.+++++.-...+|...|++++...
T Consensus       176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~  208 (400)
T COG3071         176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLA  208 (400)
T ss_pred             HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHH
Confidence            999999999999999999999999999988764

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.27  E-value=0.00083  Score=62.10  Aligned_cols=121  Identities=19%  Similarity=0.146  Sum_probs=98.7

Q ss_pred             CCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCC--CCHHHHHHHHHHHHHHcCCH
Q 024536          134 KESESMDVYYQEMIKAY-PEDALVLANYAKFLKEIRGDFVKAEEYCGRAIL----AKP--GDGNVLSMYGDLIWINHKDA  206 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~-P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~----ldP--~da~al~nla~ll~~~~gd~  206 (266)
                      ++|.-....|.+.++.+ |..+.+...++.+-. +-||.+.|..+|+++-+    ++-  +.-.++.+.+.++.- ++++
T Consensus       191 kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~M-Q~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg-~nn~  268 (366)
T KOG2796|consen  191 KEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISM-QIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLG-QNNF  268 (366)
T ss_pred             hhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheec-ccch
Confidence            67888899999999999 678888889998775 57999999999996544    332  334566777766644 7899


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccccccccccCCCC
Q 024536          207 PRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDDQETCASQP  256 (266)
Q Consensus       207 deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~~~~~~~~~  256 (266)
                      ..|...|.+.+..||.++.+.++-|.++...|+..+|+++-|.+-+-.|.
T Consensus       269 a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~  318 (366)
T KOG2796|consen  269 AEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR  318 (366)
T ss_pred             HHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence            99999999999999999999999999999999999999776555544443

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.26  E-value=0.00062  Score=62.31  Aligned_cols=110  Identities=17%  Similarity=0.200  Sum_probs=78.8

Q ss_pred             CHHHHHHHHHHHHHHC--CCC----HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHH
Q 024536          135 ESESMDVYYQEMIKAY--PED----ALVLANYAKFLKEIR-GDFVKAEEYCGRAILAKP--GD----GNVLSMYGDLIWI  201 (266)
Q Consensus       135 ~~eeA~~~y~rALel~--P~~----~~al~nlA~~L~~~~-gd~e~A~~~~erAL~ldP--~d----a~al~nla~ll~~  201 (266)
                      ++++|+.+|++|+++.  -++    +.++.++|.++. .. +++++|..+|++|+.+--  +.    ..++..+|.++..
T Consensus        89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye-~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~  167 (282)
T PF14938_consen   89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYE-EQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR  167 (282)
T ss_dssp             THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHC-CTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH
Confidence            7899999999999983  222    357788888775 45 899999999999999732  22    2456778888776


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCC----H---HHHHHHHHHHHHcCCccccccc
Q 024536          202 NHKDAPRAKSYFDRAVHSAPDD----C---HVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       202 ~~gd~deAi~~~ekAL~l~P~d----a---~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                       .++|++|+.+|++++...-++    .   ..+.....+++..|+...|.+.
T Consensus       168 -l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~  218 (282)
T PF14938_consen  168 -LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKA  218 (282)
T ss_dssp             -TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             -hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence             789999999999999864321    1   2345667788888988888743

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.25  E-value=0.0036  Score=52.55  Aligned_cols=82  Identities=12%  Similarity=0.025  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHH
Q 024536          155 LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG---NVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCH---VLA  228 (266)
Q Consensus       155 ~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da---~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~---a~~  228 (266)
                      ..+++-|.-.. ..|+|++|.+.|+.....-|..+   .+...++.+++. .+++++|+..+++-|+++|.++.   +++
T Consensus        11 ~~ly~~a~~~l-~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~-~~~y~~A~a~~~rFirLhP~hp~vdYa~Y   88 (142)
T PF13512_consen   11 QELYQEAQEAL-QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK-QGDYEEAIAAYDRFIRLHPTHPNVDYAYY   88 (142)
T ss_pred             HHHHHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence            45555555444 47999999999999999988754   678889988887 89999999999999999998875   455


Q ss_pred             HHHHHHHHcC
Q 024536          229 SYARFLWDAG  238 (266)
Q Consensus       229 ~lA~ll~~~G  238 (266)
                      ..|.....+.
T Consensus        89 ~~gL~~~~~~   98 (142)
T PF13512_consen   89 MRGLSYYEQD   98 (142)
T ss_pred             HHHHHHHHHh
Confidence            5555555554

>PLN03218 maturation of RBCL 1; Provisional

Probab=97.22  E-value=0.0038  Score=67.36  Aligned_cols=108  Identities=17%  Similarity=0.115  Sum_probs=46.7

Q ss_pred             CCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcCCHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPE-DALVLANYAKFLKEIRGDFVKAEEYCGRAILA--KPGDGNVLSMYGDLIWINHKDAPRAK  210 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~-~~~al~nlA~~L~~~~gd~e~A~~~~erAL~l--dP~da~al~nla~ll~~~~gd~deAi  210 (266)
                      ++.++|..+|+++.+.... |...|+.+-..+. ..|++++|..+|++....  .|+ ...|..+...+.+ .|++++|.
T Consensus       486 G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~-k~G~~eeAl~lf~~M~~~Gv~PD-~vTYnsLI~a~~k-~G~~deA~  562 (1060)
T PLN03218        486 GKVDAMFEVFHEMVNAGVEANVHTFGALIDGCA-RAGQVAKAFGAYGIMRSKNVKPD-RVVFNALISACGQ-SGAVDRAF  562 (1060)
T ss_pred             cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HCcCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHH-CCCHHHHH
Confidence            4555555555555554332 3444444433332 345555555555554432  222 3333333333333 34444444


Q ss_pred             HHHHHHHH----hCCCCHHHHHHHHHHHHHcCCcccccc
Q 024536          211 SYFDRAVH----SAPDDCHVLASYARFLWDAGEEEDDDD  245 (266)
Q Consensus       211 ~~~ekAL~----l~P~da~a~~~lA~ll~~~G~~~eA~~  245 (266)
                      .+|++...    +.|+ ...+..+..+|.+.|+.++|.+
T Consensus       563 ~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~e  600 (1060)
T PLN03218        563 DVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKE  600 (1060)
T ss_pred             HHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHH
Confidence            44444433    1232 2333334444444444444443

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.20  E-value=0.003  Score=57.95  Aligned_cols=93  Identities=17%  Similarity=0.258  Sum_probs=78.3

Q ss_pred             CCHHHHHHHHHHHHHH--------CCCCH----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 024536          134 KESESMDVYYQEMIKA--------YPEDA----------LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMY  195 (266)
Q Consensus       134 ~~~eeA~~~y~rALel--------~P~~~----------~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nl  195 (266)
                      ++|.+|+..|+.||..        .|..+          .++.||+.++. ..++|=++++.....|...|.+..+|+..
T Consensus       192 ~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L-~~~e~yevleh~seiL~~~~~nvKA~frR  270 (329)
T KOG0545|consen  192 GRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLL-KKEEYYEVLEHCSEILRHHPGNVKAYFRR  270 (329)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHh-hHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence            6899999999999754        45544          56788888775 57999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 024536          196 GDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLA  228 (266)
Q Consensus       196 a~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~  228 (266)
                      |.+... .=+.++|.+-|+++++++|.-+.+..
T Consensus       271 akAhaa-~Wn~~eA~~D~~~vL~ldpslasvVs  302 (329)
T KOG0545|consen  271 AKAHAA-VWNEAEAKADLQKVLELDPSLASVVS  302 (329)
T ss_pred             HHHHHh-hcCHHHHHHHHHHHHhcChhhHHHHH
Confidence            987765 45789999999999999998766544

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.19  E-value=0.0051  Score=54.48  Aligned_cols=109  Identities=16%  Similarity=0.090  Sum_probs=87.9

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAIL-AKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       135 ~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~-ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +.+.+..-..+.++..|.... .+.||..+. ..|++.+|+..|++++. +-.+|+..+..++...+. .+++.+|...+
T Consensus        71 dP~R~~Rea~~~~~~ApTvqn-r~rLa~al~-elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa-~~~~A~a~~tL  147 (251)
T COG4700          71 DPERHLREATEELAIAPTVQN-RYRLANALA-ELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFA-IQEFAAAQQTL  147 (251)
T ss_pred             ChhHHHHHHHHHHhhchhHHH-HHHHHHHHH-HhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHh-hccHHHHHHHH
Confidence            445555566666777776543 455677665 37999999999999998 567889999999999887 68999999999


Q ss_pred             HHHHHhCCC--CHHHHHHHHHHHHHcCCccccccc
Q 024536          214 DRAVHSAPD--DCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       214 ekAL~l~P~--da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      ++..+.+|.  .+.-...+|.+|..+|++++|+..
T Consensus       148 e~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesa  182 (251)
T COG4700         148 EDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESA  182 (251)
T ss_pred             HHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHH
Confidence            999999995  455677899999999999998843

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.14  E-value=0.0022  Score=59.72  Aligned_cols=109  Identities=17%  Similarity=0.193  Sum_probs=78.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH--HHHHHHcCCHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYG--DLIWINHKDAPRAKS  211 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla--~ll~~~~gd~deAi~  211 (266)
                      +++.+|...|..++..+|++..+...|+.++. ..|+.+.|...+...=....++.. +..-+  .++.+ ..+..+ ..
T Consensus       148 e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l-~~g~~e~A~~iL~~lP~~~~~~~~-~~l~a~i~ll~q-aa~~~~-~~  223 (304)
T COG3118         148 EDFGEAAPLLKQALQAAPENSEAKLLLAECLL-AAGDVEAAQAILAALPLQAQDKAA-HGLQAQIELLEQ-AAATPE-IQ  223 (304)
T ss_pred             cchhhHHHHHHHHHHhCcccchHHHHHHHHHH-HcCChHHHHHHHHhCcccchhhHH-HHHHHHHHHHHH-HhcCCC-HH
Confidence            78899999999999999999999999999876 479999888766553222222221 11111  12212 222222 24


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536          212 YFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       212 ~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      -+++.+..+|+|..+.+.+|..+...|+.++|.++
T Consensus       224 ~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~  258 (304)
T COG3118         224 DLQRRLAADPDDVEAALALADQLHLVGRNEAALEH  258 (304)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            56778888999999999999999999999999853

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.14  E-value=0.0027  Score=62.71  Aligned_cols=112  Identities=20%  Similarity=0.274  Sum_probs=92.5

Q ss_pred             CCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 024536          134 KESESMDVYYQEMIKAYPE----DALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRA  209 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~----~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deA  209 (266)
                      ++.+.+.+.|+.+|++-|.    .+.+|..||.+.. .+.++..|.+.+..||-.-|.+--.- .|-.+-.+ .+++|+.
T Consensus       380 ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feI-Rq~~l~~ARkiLG~AIG~cPK~KlFk-~YIelElq-L~efDRc  456 (677)
T KOG1915|consen  380 EDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEI-RQLNLTGARKILGNAIGKCPKDKLFK-GYIELELQ-LREFDRC  456 (677)
T ss_pred             hhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHH-HHcccHHHHHHHHHHhccCCchhHHH-HHHHHHHH-HhhHHHH
Confidence            7889999999999999996    4688889998775 46788999999999999999875433 33333334 4689999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccccc
Q 024536          210 KSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDD  248 (266)
Q Consensus       210 i~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~  248 (266)
                      ..+|++-|+..|.++.+|..+|.+-...|+.+.|..+.+
T Consensus       457 RkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaife  495 (677)
T KOG1915|consen  457 RKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFE  495 (677)
T ss_pred             HHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            999999999999999999999999999999988875543

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.07  E-value=0.0031  Score=63.64  Aligned_cols=100  Identities=16%  Similarity=0.075  Sum_probs=86.8

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDAL-VLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY  212 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~-al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~  212 (266)
                      ++...|++++++|+-..|.... .+.|||.++.. -+-.-+|-.++.++|.++-..|..++.+|.++.. ..+.++|++.
T Consensus       621 gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~-~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~-l~~i~~a~~~  698 (886)
T KOG4507|consen  621 GNSTFAIACLQRALNLAPLQQDVPLVNLANLLIH-YGLHLDATKLLLQALAINSSEPLTFLSLGNAYLA-LKNISGALEA  698 (886)
T ss_pred             CCcHHHHHHHHHHhccChhhhcccHHHHHHHHHH-hhhhccHHHHHHHHHhhcccCchHHHhcchhHHH-HhhhHHHHHH
Confidence            6779999999999999998764 57888887753 4677899999999999998889999999998876 5789999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHH
Q 024536          213 FDRAVHSAPDDCHVLASYARFLW  235 (266)
Q Consensus       213 ~ekAL~l~P~da~a~~~lA~ll~  235 (266)
                      |++|++++|+++.....+-.+.+
T Consensus       699 ~~~a~~~~~~~~~~~~~l~~i~c  721 (886)
T KOG4507|consen  699 FRQALKLTTKCPECENSLKLIRC  721 (886)
T ss_pred             HHHHHhcCCCChhhHHHHHHHHH
Confidence            99999999999998887766655

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.05  E-value=0.0022  Score=57.24  Aligned_cols=78  Identities=15%  Similarity=0.110  Sum_probs=69.2

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcc
Q 024536          167 IRGDFVKAEEYCGRAILAKPGDGN-----VLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEE  241 (266)
Q Consensus       167 ~~gd~e~A~~~~erAL~ldP~da~-----al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~  241 (266)
                      ..|+|++|..-|..||++=|..+.     .|.|.|.++.. .+.++.|+.-+-+||+++|.+-.++...|.+|-....++
T Consensus       107 ~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iK-l~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~e  185 (271)
T KOG4234|consen  107 KNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIK-LRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYE  185 (271)
T ss_pred             hcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHH-hhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHH
Confidence            479999999999999999987653     56677777766 678999999999999999999999999999999999999


Q ss_pred             cccc
Q 024536          242 DDDD  245 (266)
Q Consensus       242 eA~~  245 (266)
                      +|++
T Consensus       186 eale  189 (271)
T KOG4234|consen  186 EALE  189 (271)
T ss_pred             HHHH
Confidence            9984

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.98  E-value=0.00023  Score=67.36  Aligned_cols=88  Identities=17%  Similarity=0.064  Sum_probs=75.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +.+++|+++|-+||+++|..+.+|.+.+.++. ..+...+|++-|..|+.++|+.+.-|-..+.+. .+.|++++|..++
T Consensus       128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~l-kl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~-rllg~~e~aa~dl  205 (377)
T KOG1308|consen  128 GEFDTAIELFTSAIELNPPLAILYAKRASVFL-KLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAE-RLLGNWEEAAHDL  205 (377)
T ss_pred             cchhhhhcccccccccCCchhhhcccccceee-eccCCchhhhhhhhhhccCcccccccchhhHHH-HHhhchHHHHHHH
Confidence            45899999999999999999999999998775 367789999999999999999987665555544 3478999999999


Q ss_pred             HHHHHhCCCC
Q 024536          214 DRAVHSAPDD  223 (266)
Q Consensus       214 ekAL~l~P~d  223 (266)
                      ..|.+++=+-
T Consensus       206 ~~a~kld~dE  215 (377)
T KOG1308|consen  206 ALACKLDYDE  215 (377)
T ss_pred             HHHHhccccH
Confidence            9999998653

>PLN03077 Protein ECB2; Provisional

Probab=96.96  E-value=0.005  Score=64.38  Aligned_cols=110  Identities=11%  Similarity=-0.009  Sum_probs=81.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILA--KPGDGNVLSMYGDLIWINHKDAPRAKS  211 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~l--dP~da~al~nla~ll~~~~gd~deAi~  211 (266)
                      +++++|...|+++    +.+...|+.+...+. ..|+.++|+++|++.++.  .|+..... .+-..+.+ .|++++|..
T Consensus       538 G~~~~A~~~f~~~----~~d~~s~n~lI~~~~-~~G~~~~A~~lf~~M~~~g~~Pd~~T~~-~ll~a~~~-~g~v~ea~~  610 (857)
T PLN03077        538 GRMNYAWNQFNSH----EKDVVSWNILLTGYV-AHGKGSMAVELFNRMVESGVNPDEVTFI-SLLCACSR-SGMVTQGLE  610 (857)
T ss_pred             CCHHHHHHHHHhc----CCChhhHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCCcccHH-HHHHHHhh-cChHHHHHH
Confidence            6788888888876    567778887776654 579999999999988874  56655433 33334544 788999999


Q ss_pred             HHHHHHHhCCC--CHHHHHHHHHHHHHcCCccccccccccc
Q 024536          212 YFDRAVHSAPD--DCHVLASYARFLWDAGEEEDDDDGDDQE  250 (266)
Q Consensus       212 ~~ekAL~l~P~--da~a~~~lA~ll~~~G~~~eA~~~~~~~  250 (266)
                      +|++..+..+-  +...+..+..+|.+.|+.++|.+.-+.+
T Consensus       611 ~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m  651 (857)
T PLN03077        611 YFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM  651 (857)
T ss_pred             HHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence            99998854322  3456778889999999999998765554

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.95  E-value=0.0086  Score=55.31  Aligned_cols=110  Identities=12%  Similarity=-0.002  Sum_probs=88.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLK-EIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY  212 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~-~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~  212 (266)
                      .+++-|+..++++.+++-+.......-+++-. .....+.+|.-+|+..-..-|-.+..+...+.+... ++++++|+..
T Consensus       151 ~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~-~~~~eeAe~l  229 (299)
T KOG3081|consen  151 HRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQ-LGRYEEAESL  229 (299)
T ss_pred             HHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHH-hcCHHHHHHH
Confidence            67888999999999888765433222222111 123468899999999988777788888889988766 7999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536          213 FDRAVHSAPDDCHVLASYARFLWDAGEEEDDD  244 (266)
Q Consensus       213 ~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~  244 (266)
                      ++.|+..++++++.+.++-.+-...|...++.
T Consensus       230 L~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~  261 (299)
T KOG3081|consen  230 LEEALDKDAKDPETLANLIVLALHLGKDAEVT  261 (299)
T ss_pred             HHHHHhccCCCHHHHHHHHHHHHHhCCChHHH
Confidence            99999999999999999999999999998877

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=96.92  E-value=0.025  Score=51.24  Aligned_cols=100  Identities=15%  Similarity=0.131  Sum_probs=77.7

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 024536          132 SGKESESMDVYYQEMIKAYPED-ALVLANYAKFLKEIRG--------DFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN  202 (266)
Q Consensus       132 ~~~~~eeA~~~y~rALel~P~~-~~al~nlA~~L~~~~g--------d~e~A~~~~erAL~ldP~da~al~nla~ll~~~  202 (266)
                      ...+..+|..+|++|.+..-.. ..+.++++.++.  .|        +..+|..+|.+|-...  ++.+..++|.++..-
T Consensus       125 v~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~--~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G  200 (292)
T COG0790         125 VPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYL--SGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKG  200 (292)
T ss_pred             cccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH--cChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcC
Confidence            5569999999999999986555 455777777654  23        3458999999998887  788888899777542


Q ss_pred             ---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 024536          203 ---HKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAG  238 (266)
Q Consensus       203 ---~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G  238 (266)
                         ..|+.+|..+|++|.+...  ..++..++ ++...|
T Consensus       201 ~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g  236 (292)
T COG0790         201 LGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG  236 (292)
T ss_pred             CCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence               2388999999999999887  77888888 666666

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.91  E-value=0.0019  Score=39.73  Aligned_cols=33  Identities=27%  Similarity=0.409  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 024536          155 LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD  188 (266)
Q Consensus       155 ~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d  188 (266)
                      .+|+.+|.++. ..|++++|..+|++|++++|++
T Consensus         2 ~~~~~lg~~y~-~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYE-QLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHH-HTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCC
Confidence            57889998876 5899999999999999999953

...

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=96.84  E-value=0.0018  Score=60.98  Aligned_cols=90  Identities=8%  Similarity=0.156  Sum_probs=76.1

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 024536          142 YYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAP  221 (266)
Q Consensus       142 ~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P  221 (266)
                      .|.|+....|+++.+|..|+.+.. ..+.+.+-...|-+++...|.|.+.|...+..-+...++++.+..+|.++++++|
T Consensus        95 ~~~R~tnkff~D~k~w~~y~~Y~~-k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~  173 (435)
T COG5191          95 ELYRSTNKFFNDPKIWSQYAAYVI-KKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNS  173 (435)
T ss_pred             eeehhhhcCCCCcHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCC
Confidence            567777788999999999987554 5678899999999999999999999987554445557899999999999999999


Q ss_pred             CCHHHHHHHHH
Q 024536          222 DDCHVLASYAR  232 (266)
Q Consensus       222 ~da~a~~~lA~  232 (266)
                      ++|.+|..|-.
T Consensus       174 ~~p~iw~eyfr  184 (435)
T COG5191         174 RSPRIWIEYFR  184 (435)
T ss_pred             CCchHHHHHHH
Confidence            99998876643

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=96.68  E-value=0.04  Score=51.65  Aligned_cols=96  Identities=14%  Similarity=0.125  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 024536          140 DVYYQEMIKAYPEDALVLANYAKFLKEIRG-----------DFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPR  208 (266)
Q Consensus       140 ~~~y~rALel~P~~~~al~nlA~~L~~~~g-----------d~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~de  208 (266)
                      ..-|.+.++.+|.|..+|..|..+.-....           -.+..+.+|++||+.+|++...+..|-.+..+ .-+.++
T Consensus         5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~-~~~~~~   83 (321)
T PF08424_consen    5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEK-VWDSEK   83 (321)
T ss_pred             HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hCCHHH
Confidence            357899999999999999999875432111           13677889999999999999998887777765 468899


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024536          209 AKSYFDRAVHSAPDDCHVLASYARFLWD  236 (266)
Q Consensus       209 Ai~~~ekAL~l~P~da~a~~~lA~ll~~  236 (266)
                      ...-+++++..+|++...|..|-.+...
T Consensus        84 l~~~we~~l~~~~~~~~LW~~yL~~~q~  111 (321)
T PF08424_consen   84 LAKKWEELLFKNPGSPELWREYLDFRQS  111 (321)
T ss_pred             HHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence            9999999999999999998877665544

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.67  E-value=0.0077  Score=59.59  Aligned_cols=114  Identities=17%  Similarity=0.178  Sum_probs=98.8

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024536          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY  212 (266)
Q Consensus       133 ~~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~  212 (266)
                      -+++..|...|.+||..+-.+..+|..|+.+-. ..+...-|...+.||+.+=|---..|+-|-.+- .+.|+.+-|.++
T Consensus        86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Em-knk~vNhARNv~dRAvt~lPRVdqlWyKY~ymE-E~LgNi~gaRqi  163 (677)
T KOG1915|consen   86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEM-KNKQVNHARNVWDRAVTILPRVDQLWYKYIYME-EMLGNIAGARQI  163 (677)
T ss_pred             HHHHHHHHHHHHHHHhcccccchHHHHHHHHHH-hhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHH-HHhcccHHHHHH
Confidence            378999999999999999999999999998764 457788999999999999999999999887544 557999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCcccccccccc
Q 024536          213 FDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDDQ  249 (266)
Q Consensus       213 ~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~~  249 (266)
                      |++=+...|+. .+|..+..+-+...+.+.|..+-+.
T Consensus       164 ferW~~w~P~e-qaW~sfI~fElRykeieraR~IYer  199 (677)
T KOG1915|consen  164 FERWMEWEPDE-QAWLSFIKFELRYKEIERARSIYER  199 (677)
T ss_pred             HHHHHcCCCcH-HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            99999999964 7888888888888888888866443

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=96.65  E-value=0.0033  Score=61.30  Aligned_cols=110  Identities=14%  Similarity=0.063  Sum_probs=87.4

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHH
Q 024536          133 GKESESMDVYYQEMIKAYPEDA------LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG------DGNVLSMYGDLIW  200 (266)
Q Consensus       133 ~~~~eeA~~~y~rALel~P~~~------~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~------da~al~nla~ll~  200 (266)
                      .++|++|+.+-+.-|++.-...      -++.|+|.... ..|+++.|.++|++++.+.-.      .+...+.+|..|.
T Consensus       208 LGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hi-flg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtyt  286 (639)
T KOG1130|consen  208 LGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHI-FLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYT  286 (639)
T ss_pred             eccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhh-hhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHH
Confidence            3899999998888777765543      47888988764 579999999999998876432      3456778888887


Q ss_pred             HHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCccccc
Q 024536          201 INHKDAPRAKSYFDRAVHSAP------DDCHVLASYARFLWDAGEEEDDD  244 (266)
Q Consensus       201 ~~~gd~deAi~~~ekAL~l~P------~da~a~~~lA~ll~~~G~~~eA~  244 (266)
                      . ..++++||.|+++-+++.-      ....+++.||.++...|..+.|.
T Consensus       287 l-l~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl  335 (639)
T KOG1130|consen  287 L-LKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKAL  335 (639)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHH
Confidence            6 5689999999999887764      24568889999999999999887

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.64  E-value=0.025  Score=52.32  Aligned_cols=92  Identities=20%  Similarity=0.161  Sum_probs=79.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +.+..|--+|+..-+.-|-.+..++..|.+.. .++++++|+..++.||..++++++++.|+-.+......+.+--.++.
T Consensus       187 ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l-~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l  265 (299)
T KOG3081|consen  187 EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHL-QLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNL  265 (299)
T ss_pred             hhhhhHHHHHHHHhcccCCChHHHccHHHHHH-HhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence            35889999999999988888999888887654 68999999999999999999999999999877766556667778899


Q ss_pred             HHHHHhCCCCHHH
Q 024536          214 DRAVHSAPDDCHV  226 (266)
Q Consensus       214 ekAL~l~P~da~a  226 (266)
                      .+.....|..+.+
T Consensus       266 ~QLk~~~p~h~~v  278 (299)
T KOG3081|consen  266 SQLKLSHPEHPFV  278 (299)
T ss_pred             HHHHhcCCcchHH
Confidence            9999999998765

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.61  E-value=0.0041  Score=39.50  Aligned_cols=25  Identities=24%  Similarity=0.457  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024536          192 LSMYGDLIWINHKDAPRAKSYFDRAV  217 (266)
Q Consensus       192 l~nla~ll~~~~gd~deAi~~~ekAL  217 (266)
                      |.++|.++.. .|++++|+.+|++++
T Consensus         2 l~~Lg~~~~~-~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQ-QGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHH-CT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-cCCHHHHHHHHHHHH
Confidence            4556655544 566666666666633

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.59  E-value=0.044  Score=50.15  Aligned_cols=110  Identities=18%  Similarity=0.154  Sum_probs=81.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHc----
Q 024536          134 KESESMDVYYQEMIKAYPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN---VLSMYGDLIWINH----  203 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~---~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~---al~nla~ll~~~~----  203 (266)
                      +++++|+..|+++....|..+   .++..++.+.+ ..+++++|+.+.++-+.+.|.++.   +++..|..++...    
T Consensus        48 gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Y-k~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~  126 (254)
T COG4105          48 GNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYY-KNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVT  126 (254)
T ss_pred             CCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH-hcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccc
Confidence            689999999999999999886   46667776666 479999999999999999998875   4555554443211    


Q ss_pred             ---CCHHHHHHHHHHHHHhCCCCHHH-----------------HHHHHHHHHHcCCccccc
Q 024536          204 ---KDAPRAKSYFDRAVHSAPDDCHV-----------------LASYARFLWDAGEEEDDD  244 (266)
Q Consensus       204 ---gd~deAi~~~ekAL~l~P~da~a-----------------~~~lA~ll~~~G~~~eA~  244 (266)
                         .-..+|+.-|+..|..-|+...+                 -...|.+|.+.|.+..|+
T Consensus       127 rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~  187 (254)
T COG4105         127 RDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAI  187 (254)
T ss_pred             cCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence               12456777888888888876432                 235677888888877777

>smart00028 TPR Tetratricopeptide repeats

Probab=96.54  E-value=0.004  Score=35.35  Aligned_cols=31  Identities=23%  Similarity=0.368  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 024536          191 VLSMYGDLIWINHKDAPRAKSYFDRAVHSAPD  222 (266)
Q Consensus       191 al~nla~ll~~~~gd~deAi~~~ekAL~l~P~  222 (266)
                      ++.++|.++.. .+++++|+.+|+++++++|+
T Consensus         3 ~~~~~a~~~~~-~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLK-LGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHH-HhhHHHHHHHHHHHHccCCC
Confidence            45555655544 45666666666666666554

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.53  E-value=0.009  Score=56.32  Aligned_cols=110  Identities=13%  Similarity=0.043  Sum_probs=76.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHH------------------------------HHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYC------------------------------GRAIL  183 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~------------------------------erAL~  183 (266)
                      .++..|..+|.+.-.+.|........+|..|+. .+.+.+|++..                              +-.++
T Consensus        58 Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~-A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLve  136 (459)
T KOG4340|consen   58 QEFALAAECYEQLGQLHPELEQYRLYQAQSLYK-ACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVE  136 (459)
T ss_pred             HHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH-hcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHH
Confidence            566777777777777777766555555544442 23333332221                              11222


Q ss_pred             hCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccc
Q 024536          184 AKP--GDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDD  245 (266)
Q Consensus       184 ldP--~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~  245 (266)
                      .-|  +++.+..+.|.++++ .|++++|++-|+.|++..--++-+.+++|.+.+..++++.|.+
T Consensus       137 Qlp~en~Ad~~in~gCllyk-egqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk  199 (459)
T KOG4340|consen  137 QLPSENEADGQINLGCLLYK-EGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALK  199 (459)
T ss_pred             hccCCCccchhccchheeec-cccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHH
Confidence            334  566667777766666 7899999999999999999999999999999999999999985

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.49  E-value=0.012  Score=59.15  Aligned_cols=107  Identities=12%  Similarity=-0.012  Sum_probs=79.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHH
Q 024536          131 DSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG---NVLSMYGDLIWINHKDAP  207 (266)
Q Consensus       131 ~~~~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da---~al~nla~ll~~~~gd~d  207 (266)
                      +.-++|++|++...+.+...|+++.++..--.++. ....|++|+.    .|+.++.+.   ...+.-|.+.|+ .+..|
T Consensus        23 ~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValI-q~~ky~~ALk----~ikk~~~~~~~~~~~fEKAYc~Yr-lnk~D   96 (652)
T KOG2376|consen   23 GKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALI-QLDKYEDALK----LIKKNGALLVINSFFFEKAYCEYR-LNKLD   96 (652)
T ss_pred             ccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhh-hhhHHHHHHH----HHHhcchhhhcchhhHHHHHHHHH-cccHH
Confidence            44579999999999999999999998877655554 3577888874    444444311   111355666676 67899


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536          208 RAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       208 eAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      +|+..++   -+++.+.-++.-.|.+++..+++++|.++
T Consensus        97 ealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdi  132 (652)
T KOG2376|consen   97 EALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDI  132 (652)
T ss_pred             HHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHH
Confidence            9999998   56777777888888999999999998853

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.49  E-value=0.034  Score=53.66  Aligned_cols=112  Identities=16%  Similarity=0.123  Sum_probs=86.1

Q ss_pred             CCCCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHH--HcCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHH--
Q 024536          132 SGKESESMDVYYQEMIKA----YPEDALVLANYAKFLKE--IRGDFVKAEEYCGR-AILAKPGDGNVLSMYGDLIWIN--  202 (266)
Q Consensus       132 ~~~~~eeA~~~y~rALel----~P~~~~al~nlA~~L~~--~~gd~e~A~~~~er-AL~ldP~da~al~nla~ll~~~--  202 (266)
                      ..++|+.-+.+.+..-.+    -++.+.+...||.+|..  ..|+.++|+..+.. .....+.+++.+..+|.++-..  
T Consensus       153 diqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~  232 (374)
T PF13281_consen  153 DIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFL  232 (374)
T ss_pred             hhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHH
Confidence            347888888888777666    56677888889987752  16899999999999 4455678999999999887432  


Q ss_pred             ------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536          203 ------HKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDD  244 (266)
Q Consensus       203 ------~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~  244 (266)
                            ....++|+.+|.++.+++|+ .+.-.|++.++...|...+..
T Consensus       233 ~s~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL~~~g~~~~~~  279 (374)
T PF13281_consen  233 ESNFTDRESLDKAIEWYRKGFEIEPD-YYSGINAATLLMLAGHDFETS  279 (374)
T ss_pred             HcCccchHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHcCCcccch
Confidence                  12478999999999999964 466678888888888754443

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.45  E-value=0.027  Score=59.02  Aligned_cols=103  Identities=14%  Similarity=-0.009  Sum_probs=85.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++.+|.+...+.++..|+-..+...-|..+. ..|+.++|..+++..-...++|-..+..+-.+|.+ .+++++|..+|
T Consensus        23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~-r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d-~~~~d~~~~~Y  100 (932)
T KOG2053|consen   23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLF-RLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRD-LGKLDEAVHLY  100 (932)
T ss_pred             HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-HhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHH-HhhhhHHHHHH
Confidence            68999999999999999999988877777665 58999999988888888888898888888888866 78999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCC
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGE  239 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~  239 (266)
                      ++|+...|. -+.+..+=.++.+-+.
T Consensus       101 e~~~~~~P~-eell~~lFmayvR~~~  125 (932)
T KOG2053|consen  101 ERANQKYPS-EELLYHLFMAYVREKS  125 (932)
T ss_pred             HHHHhhCCc-HHHHHHHHHHHHHHHH
Confidence            999999998 5544444444444443

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=96.43  E-value=0.033  Score=56.15  Aligned_cols=99  Identities=18%  Similarity=0.146  Sum_probs=82.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH------HHHHHHHcCCHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMY------GDLIWINHKDAP  207 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nl------a~ll~~~~gd~d  207 (266)
                      ++...+...++.++.++|+++.++.||+..+......+..+....+.|....|++.+++..+      +.++- ..++.+
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~  159 (620)
T COG3914          81 ADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLK-LLGRTA  159 (620)
T ss_pred             ccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHH-HhccHH
Confidence            45577888999999999999999999998875445566777778888999999999988877      65543 367899


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHH
Q 024536          208 RAKSYFDRAVHSAPDDCHVLASYARF  233 (266)
Q Consensus       208 eAi~~~ekAL~l~P~da~a~~~lA~l  233 (266)
                      +|..+.++++++.|.++++...+...
T Consensus       160 ~~~~~l~~~~d~~p~~~~~~~~~~~~  185 (620)
T COG3914         160 EAELALERAVDLLPKYPRVLGALMTA  185 (620)
T ss_pred             HHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence            99999999999999998887766655

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.41  E-value=0.0065  Score=36.67  Aligned_cols=31  Identities=26%  Similarity=0.356  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 024536          191 VLSMYGDLIWINHKDAPRAKSYFDRAVHSAPD  222 (266)
Q Consensus       191 al~nla~ll~~~~gd~deAi~~~ekAL~l~P~  222 (266)
                      +++++|.++.. .|++++|+.+|+++++..|+
T Consensus         2 a~~~~a~~~~~-~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYK-LGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHH-HCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHH-ccCHHHHHHHHHHHHHHCcC
Confidence            45566666554 56666666666666666665

>PRK10941 hypothetical protein; Provisional

Probab=96.39  E-value=0.028  Score=51.90  Aligned_cols=60  Identities=15%  Similarity=-0.030  Sum_probs=56.0

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 024536          167 IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVL  227 (266)
Q Consensus       167 ~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~  227 (266)
                      ..+++++|+++.++.+.++|+++.-+...|.++.+ .+.+..|..-++..|+..|+++.+.
T Consensus       193 ~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~q-L~c~~~A~~DL~~fl~~~P~dp~a~  252 (269)
T PRK10941        193 EEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQ-LDCEHVALSDLSYFVEQCPEDPISE  252 (269)
T ss_pred             HcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhCCCchhHH
Confidence            57999999999999999999999999999988876 7999999999999999999998764

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=96.37  E-value=0.07  Score=48.29  Aligned_cols=101  Identities=16%  Similarity=0.116  Sum_probs=76.4

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHH----c
Q 024536          132 SGKESESMDVYYQEMIKAYPEDALVLANYAKFLKE---IRGDFVKAEEYCGRAILAKPGD-GNVLSMYGDLIWIN----H  203 (266)
Q Consensus       132 ~~~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~---~~gd~e~A~~~~erAL~ldP~d-a~al~nla~ll~~~----~  203 (266)
                      ...+..+|..+|+  ...+..++.+.++||.++..   +..|+.+|..+|++|....-.. ..+.++++.++..-    .
T Consensus        89 v~~~~~~A~~~~~--~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~  166 (292)
T COG0790          89 VSRDKTKAADWYR--CAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALA  166 (292)
T ss_pred             ccccHHHHHHHHH--HHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhc
Confidence            3466899999999  66678889999999998753   2348999999999999985544 34477788766441    0


Q ss_pred             C--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024536          204 K--DAPRAKSYFDRAVHSAPDDCHVLASYARFLWD  236 (266)
Q Consensus       204 g--d~deAi~~~ekAL~l~P~da~a~~~lA~ll~~  236 (266)
                      -  +...|+.+|.+|....  ++.+...++.+|..
T Consensus       167 ~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~  199 (292)
T COG0790         167 VAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEK  199 (292)
T ss_pred             ccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHc
Confidence            1  3458999999999987  66778888866654

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.36  E-value=0.049  Score=44.24  Aligned_cols=55  Identities=18%  Similarity=0.131  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536          191 VLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       191 al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      ++..++.++.. .|++++|+.++++++.++|-+-.++..+-.+|..+|+..+|+++
T Consensus        64 ~~~~l~~~~~~-~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~  118 (146)
T PF03704_consen   64 ALERLAEALLE-AGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRV  118 (146)
T ss_dssp             HHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHHh-ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHH
Confidence            34455655555 79999999999999999999999999999999999999999964

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.33  E-value=0.032  Score=56.32  Aligned_cols=108  Identities=11%  Similarity=0.033  Sum_probs=79.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------------------
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAIL------------------------------  183 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~------------------------------  183 (266)
                      ...++|+..++   -+++.+..++.-.|.++| ..++|++|...|+..++                              
T Consensus        93 nk~Dealk~~~---~~~~~~~~ll~L~AQvlY-rl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~  168 (652)
T KOG2376|consen   93 NKLDEALKTLK---GLDRLDDKLLELRAQVLY-RLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVP  168 (652)
T ss_pred             ccHHHHHHHHh---cccccchHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhcc
Confidence            46678888877   567777777777888887 47889999888887743                              


Q ss_pred             hCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCC-------HHHHHHHHHHHHHcCCccccccc
Q 024536          184 AKPG-DGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSA--------PDD-------CHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       184 ldP~-da~al~nla~ll~~~~gd~deAi~~~ekAL~l~--------P~d-------a~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      ..|. +-+.++|.|.++.. .|+|.+|++.+++|+++-        -++       ..++..++.++..+|+.++|.++
T Consensus       169 ~v~e~syel~yN~Ac~~i~-~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~i  246 (652)
T KOG2376|consen  169 EVPEDSYELLYNTACILIE-NGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSI  246 (652)
T ss_pred             CCCcchHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence            2233 34567788877766 799999999999994321        110       12577899999999999999864

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.31  E-value=0.049  Score=42.01  Aligned_cols=49  Identities=16%  Similarity=0.061  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 024536          139 MDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD  188 (266)
Q Consensus       139 A~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d  188 (266)
                      .+..++++++.+|++..+.+.+|..+. ..|++++|.+.+-.++..+|+.
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~-~~g~~e~Al~~Ll~~v~~dr~~   55 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALL-AAGDYEEALDQLLELVRRDRDY   55 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHH-HTT-HHHHHHHHHHHHCC-TTC
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCccc
Confidence            356788888888888888888888765 5788888888888888888765

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.30  E-value=0.022  Score=43.91  Aligned_cols=66  Identities=15%  Similarity=0.012  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCc
Q 024536          174 AEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD--CHVLASYARFLWDAGEE  240 (266)
Q Consensus       174 A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~d--a~a~~~lA~ll~~~G~~  240 (266)
                      ....++++++.+|+|..+.+.+|..+.. .|++++|+..+-.++..++++  ..+...+-.++...|..
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~-~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~   74 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLA-AGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG   74 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHH-TT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence            3557889999999999999999998866 899999999999999999865  55666666666666653

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.22  E-value=0.024  Score=39.72  Aligned_cols=35  Identities=17%  Similarity=0.201  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 024536          192 LSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVL  227 (266)
Q Consensus       192 l~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~  227 (266)
                      ++.+|+.++. .|+|++|..+.+++|+++|+|.++.
T Consensus         4 lY~lAig~yk-l~~Y~~A~~~~~~lL~~eP~N~Qa~   38 (53)
T PF14853_consen    4 LYYLAIGHYK-LGEYEKARRYCDALLEIEPDNRQAQ   38 (53)
T ss_dssp             HHHHHHHHHH-TT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred             HHHHHHHHHH-hhhHHHHHHHHHHHHhhCCCcHHHH
Confidence            4445555554 4566666666666666666665554

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=96.20  E-value=0.0062  Score=59.45  Aligned_cols=105  Identities=12%  Similarity=0.150  Sum_probs=82.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHHc
Q 024536          134 KESESMDVYYQEMIKAYPEDA----LVLANYAKFLKEIRGDFVKAEEYCGRAILAKP------GDGNVLSMYGDLIWINH  203 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~----~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP------~da~al~nla~ll~~~~  203 (266)
                      +++.+.+.+|+.||++..++-    .+|..||.++. ..+||++|++|-..-|.+..      ..+..-.|+|..+ +++
T Consensus        31 gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyf-yL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl-Kv~  108 (639)
T KOG1130|consen   31 GDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYF-YLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL-KVK  108 (639)
T ss_pred             cchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhh-hHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh-hhh
Confidence            577888999999999999885    45666777765 47999999998776665432      3345567899887 558


Q ss_pred             CCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCc
Q 024536          204 KDAPRAKSYFDRAVHSAPD------DCHVLASYARFLWDAGEE  240 (266)
Q Consensus       204 gd~deAi~~~ekAL~l~P~------da~a~~~lA~ll~~~G~~  240 (266)
                      |.|++|+.++.+-+.+.-.      ...+++++|.+|...|+.
T Consensus       109 G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~  151 (639)
T KOG1130|consen  109 GAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKC  151 (639)
T ss_pred             cccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccc
Confidence            9999999999998877542      346899999999998874

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.20  E-value=0.28  Score=42.06  Aligned_cols=107  Identities=16%  Similarity=0.141  Sum_probs=83.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      ++.++++.+++..--+.|+.+.+-..-|+++. .+|++.+|+..++.+.+..|..+.+-..++.+++. .+|.+ =..|-
T Consensus        24 ~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i-~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~-~~D~~-Wr~~A  100 (160)
T PF09613_consen   24 GDPDDAEALLDALRVLRPEFPELDLFDGWLHI-VRGDWDDALRLLRELEERAPGFPYAKALLALCLYA-LGDPS-WRRYA  100 (160)
T ss_pred             CChHHHHHHHHHHHHhCCCchHHHHHHHHHHH-HhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH-cCChH-HHHHH
Confidence            47899999999999999999999988888665 68999999999999999999999999999988866 67654 34556


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCcccccc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDD  245 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~  245 (266)
                      +++++..+ ++.+.. +...+....+...|.+
T Consensus       101 ~evle~~~-d~~a~~-Lv~~Ll~~~~~~~a~~  130 (160)
T PF09613_consen  101 DEVLESGA-DPDARA-LVRALLARADLEPAHE  130 (160)
T ss_pred             HHHHhcCC-ChHHHH-HHHHHHHhccccchhh
Confidence            66777665 555554 3444555555555543

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.19  E-value=0.049  Score=53.82  Aligned_cols=115  Identities=17%  Similarity=0.058  Sum_probs=85.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCC-HHH-----HHHHHH--HHHH--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 024536          131 DSGKESESMDVYYQEMIKAYPED-ALV-----LANYAK--FLKE--IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIW  200 (266)
Q Consensus       131 ~~~~~~eeA~~~y~rALel~P~~-~~a-----l~nlA~--~L~~--~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~  200 (266)
                      |+.++.+.+++++.++.+..--+ +.+     +++...  ++-.  ...+.+.|++.+++....-|+.+-.++..|.++.
T Consensus       199 GF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~  278 (468)
T PF10300_consen  199 GFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLER  278 (468)
T ss_pred             CcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            34578899999999998833222 211     111111  1110  1356799999999999999999999999999876


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCccccccc
Q 024536          201 INHKDAPRAKSYFDRAVHSAPDDCH----VLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       201 ~~~gd~deAi~~~ekAL~l~P~da~----a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      . +|+.++|+++|++|+.....-.+    .++.+++.+.-+.++++|.+.
T Consensus       279 ~-~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~  327 (468)
T PF10300_consen  279 L-KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY  327 (468)
T ss_pred             H-hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence            5 89999999999999965554443    477899999999999999854

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.18  E-value=0.081  Score=45.33  Aligned_cols=73  Identities=21%  Similarity=0.080  Sum_probs=66.2

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 024536          167 IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEE  240 (266)
Q Consensus       167 ~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~  240 (266)
                      ..++.++++..+...--+.|..+++-..-|+++.. +|++++|+.+|+.+.+-.|..+.+...++.+|...++.
T Consensus        22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~-r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~   94 (160)
T PF09613_consen   22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIV-RGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP   94 (160)
T ss_pred             ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-hCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence            35799999999999999999999999888888766 89999999999999999999999988899999888875

>smart00028 TPR Tetratricopeptide repeats

Probab=96.11  E-value=0.01  Score=33.53  Aligned_cols=33  Identities=27%  Similarity=0.350  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 024536          155 LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD  188 (266)
Q Consensus       155 ~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d  188 (266)
                      .++.++|.++. ..+++++|..+|+++++++|.+
T Consensus         2 ~~~~~~a~~~~-~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYL-KLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHH-HHhhHHHHHHHHHHHHccCCCC
Confidence            46788888776 5799999999999999999864

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.09  E-value=0.012  Score=37.34  Aligned_cols=32  Identities=34%  Similarity=0.604  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC
Q 024536          156 VLANYAKFLKEIRGDFVKAEEYCGRAILA--KPGD  188 (266)
Q Consensus       156 al~nlA~~L~~~~gd~e~A~~~~erAL~l--dP~d  188 (266)
                      +|.++|.++. ..|++++|+.+|++||.+  +|++
T Consensus         1 al~~Lg~~~~-~~g~~~~Ai~~y~~aL~l~~~~~~   34 (36)
T PF13176_consen    1 ALNNLGRIYR-QQGDYEKAIEYYEQALALARDPED   34 (36)
T ss_dssp             HHHHHHHHHH-HCT-HHHHHHHHHHHHHHHHHCT-
T ss_pred             CHHHHHHHHH-HcCCHHHHHHHHHHHHHhcccccC
Confidence            5789999876 689999999999996644  4544

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.08  E-value=0.0074  Score=54.82  Aligned_cols=56  Identities=20%  Similarity=0.266  Sum_probs=43.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN  190 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~  190 (266)
                      .+.+.|.++|.+|+++.|++..-|+.+|.+- +..|+++.|.+.|++.++++|.|..
T Consensus         9 ~D~~aaaely~qal~lap~w~~gwfR~g~~~-ekag~~daAa~a~~~~L~ldp~D~~   64 (287)
T COG4976           9 GDAEAAAELYNQALELAPEWAAGWFRLGEYT-EKAGEFDAAAAAYEEVLELDPEDHG   64 (287)
T ss_pred             CChHHHHHHHHHHhhcCchhhhhhhhcchhh-hhcccHHHHHHHHHHHHcCCccccc
Confidence            5677788888888888888888888888643 4568888888888888888887754

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.06  E-value=0.026  Score=54.01  Aligned_cols=112  Identities=16%  Similarity=0.064  Sum_probs=83.0

Q ss_pred             CHHHHHHHHHHHHHH-CCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 024536          135 ESESMDVYYQEMIKA-YPED---ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAK  210 (266)
Q Consensus       135 ~~eeA~~~y~rALel-~P~~---~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi  210 (266)
                      +.+.-...+++.+-. +|+.   ..++..|+.-|. ..|-|++|++..++|+++||.|.-+....+.++. +.+++.++.
T Consensus       152 ~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~-E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVle-m~~r~Keg~  229 (491)
T KOG2610|consen  152 NQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLE-ECGIYDDAEKQADRALQINRFDCWASHAKAHVLE-MNGRHKEGK  229 (491)
T ss_pred             chhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHH-HhccchhHHHHHHhhccCCCcchHHHHHHHHHHH-hcchhhhHH
Confidence            444455577888877 7777   567777776665 5899999999999999999999999999999884 589999999


Q ss_pred             HHHHHHHHhCCCC----HHHHHHHHHHHHHcCCccccccccc
Q 024536          211 SYFDRAVHSAPDD----CHVLASYARFLWDAGEEEDDDDGDD  248 (266)
Q Consensus       211 ~~~ekAL~l~P~d----a~a~~~lA~ll~~~G~~~eA~~~~~  248 (266)
                      ++.++--..=-..    +.-+..-|.++.+.++++.|+++.+
T Consensus       230 eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD  271 (491)
T KOG2610|consen  230 EFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD  271 (491)
T ss_pred             HHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence            9887643221111    1113345778888899999987643

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=95.97  E-value=0.059  Score=45.22  Aligned_cols=92  Identities=13%  Similarity=0.033  Sum_probs=66.5

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHH-hCCCC-HHHHHHHHHHHHHHcCCHHHHH
Q 024536          135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKE--IRGDFVKAEEYCGRAIL-AKPGD-GNVLSMYGDLIWINHKDAPRAK  210 (266)
Q Consensus       135 ~~eeA~~~y~rALel~P~~~~al~nlA~~L~~--~~gd~e~A~~~~erAL~-ldP~d-a~al~nla~ll~~~~gd~deAi  210 (266)
                      ++-...+.+++.-...--.....+|||++|-.  ...|..+.+.+++..++ ..|.. -+.++.+|..+++ .++|++|+
T Consensus        13 d~~~~~e~~~rq~a~~~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yR-lkeY~~s~   91 (149)
T KOG3364|consen   13 DLIAGQEEILRQAARSDVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYR-LKEYSKSL   91 (149)
T ss_pred             hhhHHHHHHHHHHHhccchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHH-HhhHHHHH
Confidence            33344444444444433344677888887742  23567889999999997 56654 3566778877877 58899999


Q ss_pred             HHHHHHHHhCCCCHHHH
Q 024536          211 SYFDRAVHSAPDDCHVL  227 (266)
Q Consensus       211 ~~~ekAL~l~P~da~a~  227 (266)
                      .|++..++.+|+|.++.
T Consensus        92 ~yvd~ll~~e~~n~Qa~  108 (149)
T KOG3364|consen   92 RYVDALLETEPNNRQAL  108 (149)
T ss_pred             HHHHHHHhhCCCcHHHH
Confidence            99999999999999875

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.93  E-value=0.015  Score=57.86  Aligned_cols=102  Identities=16%  Similarity=0.040  Sum_probs=80.3

Q ss_pred             CCHHHHHHHHHHH-HHHCCC--------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------hCC---------
Q 024536          134 KESESMDVYYQEM-IKAYPE--------DALVLANYAKFLKEIRGDFVKAEEYCGRAIL---------AKP---------  186 (266)
Q Consensus       134 ~~~eeA~~~y~rA-Lel~P~--------~~~al~nlA~~L~~~~gd~e~A~~~~erAL~---------ldP---------  186 (266)
                      +++.+|.+++... +...|.        ...+|+|+|.+.+ ..+.|..+..+|.+||+         +.|         
T Consensus       254 gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~-~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~n  332 (696)
T KOG2471|consen  254 GNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHY-QLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQN  332 (696)
T ss_pred             cchHHHHHHHHhcccccccCccccchhhhheeecCcceEee-ehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcc
Confidence            4667777766443 555555        3467899998776 57899999999999996         111         


Q ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 024536          187 GDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDA  237 (266)
Q Consensus       187 ~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~  237 (266)
                      ..-+++||+|+.+.. .|+.-.|.++|.+|+..--.+|..|..+|.+....
T Consensus       333 ks~eilYNcG~~~Lh-~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  333 KSMEILYNCGLLYLH-SGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA  382 (696)
T ss_pred             cchhhHHhhhHHHHh-cCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            235789999988877 79999999999999999999999999999876654

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=95.88  E-value=0.029  Score=50.08  Aligned_cols=62  Identities=21%  Similarity=0.202  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024536          174 AEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWD  236 (266)
Q Consensus       174 A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~  236 (266)
                      |+.||.+|+.+.|++...|+.+|.+... +++.-.|+-+|-|++...--.+.+..++..++..
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~-~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASY-QGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHH-TT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhcc-ccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            3445555555555555555555544433 4555555555555554444444455555554444

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=95.85  E-value=0.02  Score=34.49  Aligned_cols=33  Identities=30%  Similarity=0.315  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 024536          155 LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD  188 (266)
Q Consensus       155 ~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d  188 (266)
                      ++++++|.++. ..|++++|..+|++++...|++
T Consensus         1 ~a~~~~a~~~~-~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYY-KLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHH-HHCHHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHH-HccCHHHHHHHHHHHHHHCcCC
Confidence            47889998876 4899999999999999999974

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.83  E-value=0.11  Score=48.19  Aligned_cols=110  Identities=16%  Similarity=0.150  Sum_probs=96.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH-HHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAP-RAKSY  212 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~d-eAi~~  212 (266)
                      +.-.+|.++...+|.++|.|-.+|...=.+|.+.+.++.+-+.++.+.++-+|.|-++|...-.++ +..+++. +-+++
T Consensus        57 E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~iv-e~l~d~s~rELef  135 (318)
T KOG0530|consen   57 EKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIV-ELLGDPSFRELEF  135 (318)
T ss_pred             ccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHH-HHhcCcccchHHH
Confidence            445789999999999999999999887777776778899999999999999999999998877665 5578888 88999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536          213 FDRAVHSAPDDCHVLASYARFLWDAGEEEDDD  244 (266)
Q Consensus       213 ~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~  244 (266)
                      .++++..+..+-.||..--+++..-+.+++..
T Consensus       136 ~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL  167 (318)
T KOG0530|consen  136 TKLMLDDDAKNYHAWSHRQWVLRFFKDYEDEL  167 (318)
T ss_pred             HHHHHhccccchhhhHHHHHHHHHHhhHHHHH
Confidence            99999999999999998889988888887766

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.76  E-value=0.016  Score=52.73  Aligned_cols=58  Identities=17%  Similarity=0.178  Sum_probs=52.6

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 024536          167 IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCH  225 (266)
Q Consensus       167 ~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~  225 (266)
                      ..+|.+.|.+.|.+|+++.|++...|+.+|..- +..|+++.|.+.|++.++++|++-.
T Consensus         7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~-ekag~~daAa~a~~~~L~ldp~D~~   64 (287)
T COG4976           7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYT-EKAGEFDAAAAAYEEVLELDPEDHG   64 (287)
T ss_pred             ccCChHHHHHHHHHHhhcCchhhhhhhhcchhh-hhcccHHHHHHHHHHHHcCCccccc
Confidence            368999999999999999999999999999754 5589999999999999999998753

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=95.73  E-value=0.17  Score=47.40  Aligned_cols=110  Identities=17%  Similarity=0.194  Sum_probs=83.9

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc--CCHHHHHHH
Q 024536          135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINH--KDAPRAKSY  212 (266)
Q Consensus       135 ~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~--gd~deAi~~  212 (266)
                      -.+.-+..|++||+.+|++..++..|=.... ..-+.++..+.+++++..+|++...|..|-.+.....  -.+++....
T Consensus        46 ~~E~klsilerAL~~np~~~~L~l~~l~~~~-~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~  124 (321)
T PF08424_consen   46 LAERKLSILERALKHNPDSERLLLGYLEEGE-KVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDV  124 (321)
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence            4567788999999999999988877766554 3457888899999999999999999998876553311  246677777


Q ss_pred             HHHHHHhCCCC------------------HHHHHHHHHHHHHcCCcccccc
Q 024536          213 FDRAVHSAPDD------------------CHVLASYARFLWDAGEEEDDDD  245 (266)
Q Consensus       213 ~ekAL~l~P~d------------------a~a~~~lA~ll~~~G~~~eA~~  245 (266)
                      |.++|..-..-                  .+++..+..+++++|-.+.|+.
T Consensus       125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava  175 (321)
T PF08424_consen  125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVA  175 (321)
T ss_pred             HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHH
Confidence            77776543211                  1357788999999999999983

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=95.67  E-value=0.089  Score=48.19  Aligned_cols=59  Identities=15%  Similarity=0.156  Sum_probs=52.1

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 024536          167 IRGDFVKAEEYCGRAILAKPGDG---NVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHV  226 (266)
Q Consensus       167 ~~gd~e~A~~~~erAL~ldP~da---~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a  226 (266)
                      ..|++++|..+|+++....|..+   .++..++.++++ .++++.|+.+.++-+.+.|.++.+
T Consensus        46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk-~~~y~~A~~~~drFi~lyP~~~n~  107 (254)
T COG4105          46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYK-NGEYDLALAYIDRFIRLYPTHPNA  107 (254)
T ss_pred             hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHh-cccHHHHHHHHHHHHHhCCCCCCh
Confidence            47999999999999999988775   677788888877 799999999999999999987754

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=95.65  E-value=0.038  Score=53.31  Aligned_cols=110  Identities=13%  Similarity=0.033  Sum_probs=84.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----C------HHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDAL------VLANYAKFLKEIRGDFVKAEEYCGRAILAKPG----D------GNVLSMYGD  197 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~------al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~----d------a~al~nla~  197 (266)
                      ..++++++.|++|+++..++.+      +...++.++. ...|+++|..+..+|+++-..    |      ..+++.+++
T Consensus       136 s~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~-~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaV  214 (518)
T KOG1941|consen  136 SVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFA-QLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAV  214 (518)
T ss_pred             HHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHH-HHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHH
Confidence            6799999999999998766543      4455676554 578999999999999997532    2      245667777


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCcccccc
Q 024536          198 LIWINHKDAPRAKSYFDRAVHSAP------DDCHVLASYARFLWDAGEEEDDDD  245 (266)
Q Consensus       198 ll~~~~gd~deAi~~~ekAL~l~P------~da~a~~~lA~ll~~~G~~~eA~~  245 (266)
                      .+. ++|..-.|.++++.|.++.=      -.+.-+..+|.+|...|+.+.|-.
T Consensus       215 alR-~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~  267 (518)
T KOG1941|consen  215 ALR-LLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFR  267 (518)
T ss_pred             HHH-HhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHH
Confidence            664 58999999999999988753      234456688999999999888764

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.64  E-value=0.069  Score=51.51  Aligned_cols=105  Identities=13%  Similarity=0.139  Sum_probs=67.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHH--------------
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG---NVLSMYG--------------  196 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da---~al~nla--------------  196 (266)
                      ++|++|...|.-+.+.+.-+++++.|+|.... ..|.|.+|....++|    |.++   ..+++++              
T Consensus        71 gdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~F-yLg~Y~eA~~~~~ka----~k~pL~~RLlfhlahklndEk~~~~fh~  145 (557)
T KOG3785|consen   71 GDYEEALNVYTFLMNKDDAPAELGVNLACCKF-YLGQYIEAKSIAEKA----PKTPLCIRLLFHLAHKLNDEKRILTFHS  145 (557)
T ss_pred             ccHHHHHHHHHHHhccCCCCcccchhHHHHHH-HHHHHHHHHHHHhhC----CCChHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            68899999999998888888888999887543 356677776655544    2222   1222222              


Q ss_pred             -------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536          197 -------------DLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDD  244 (266)
Q Consensus       197 -------------~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~  244 (266)
                                   .+.+. +-.|++|+..|++.+.-+|+.-..-.++|..|.+..=++-+.
T Consensus       146 ~LqD~~EdqLSLAsvhYm-R~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsq  205 (557)
T KOG3785|consen  146 SLQDTLEDQLSLASVHYM-RMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQ  205 (557)
T ss_pred             HHhhhHHHHHhHHHHHHH-HHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHH
Confidence                         22222 235778888888888777776655556666666665555444

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.62  E-value=0.031  Score=35.25  Aligned_cols=29  Identities=10%  Similarity=0.094  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024536          190 NVLSMYGDLIWINHKDAPRAKSYFDRAVHS  219 (266)
Q Consensus       190 ~al~nla~ll~~~~gd~deAi~~~ekAL~l  219 (266)
                      .++.++|.++.. +|++++|+.++++++.+
T Consensus         3 ~~~~~la~~~~~-~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRA-QGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHH-CT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh-hhhcchhhHHHHHHHHH
Confidence            456777777655 67777777777777765

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=95.60  E-value=0.054  Score=54.35  Aligned_cols=90  Identities=21%  Similarity=0.103  Sum_probs=77.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKE--IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS  211 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~--~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~  211 (266)
                      .....|+.+|-++++..|.....+.|+|.++..  ..++.-.|+.-+..|+++||....+|+.++.++.+ .+++.+|+.
T Consensus       388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~e-l~r~~eal~  466 (758)
T KOG1310|consen  388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNE-LTRYLEALS  466 (758)
T ss_pred             HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHH-HhhHHHhhh
Confidence            467789999999999999999999999887743  23677889999999999999999999999999977 578999999


Q ss_pred             HHHHHHHhCCCCH
Q 024536          212 YFDRAVHSAPDDC  224 (266)
Q Consensus       212 ~~ekAL~l~P~da  224 (266)
                      +...+....|.+.
T Consensus       467 ~~~alq~~~Ptd~  479 (758)
T KOG1310|consen  467 CHWALQMSFPTDV  479 (758)
T ss_pred             hHHHHhhcCchhh
Confidence            9999888888543

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.56  E-value=0.15  Score=50.81  Aligned_cols=92  Identities=13%  Similarity=0.081  Sum_probs=69.2

Q ss_pred             CCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHcCC-----
Q 024536          134 KESESMDVYYQEMIKAYPE--DALVLANYAKFLKEIRGDFVKAEEYCGRAILA-KPGDGNVLSMYGDLIWINHKD-----  205 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~--~~~al~nlA~~L~~~~gd~e~A~~~~erAL~l-dP~da~al~nla~ll~~~~gd-----  205 (266)
                      |+.++|++.|+..++.+|.  +-.++.|+-..|. ..+.|+++.+.+.+-=.+ -|..+...+.-|.+..+..+|     
T Consensus       273 Gr~~EAIk~~rdLlke~p~~~~l~IrenLie~LL-elq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e  351 (539)
T PF04184_consen  273 GRLREAIKMFRDLLKEFPNLDNLNIRENLIEALL-ELQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPE  351 (539)
T ss_pred             CChHHHHHHHHHHHhhCCccchhhHHHHHHHHHH-hcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCch
Confidence            7889999999999998886  4568899988876 478999999988885333 267788777776554443333     


Q ss_pred             ----------HHHHHHHHHHHHHhCCCCHHH
Q 024536          206 ----------APRAKSYFDRAVHSAPDDCHV  226 (266)
Q Consensus       206 ----------~deAi~~~ekAL~l~P~da~a  226 (266)
                                ...|++.+.||++.||.-+.+
T Consensus       352 ~a~rRGls~ae~~aveAi~RAvefNPHVp~Y  382 (539)
T PF04184_consen  352 AASRRGLSPAEMNAVEAIHRAVEFNPHVPKY  382 (539)
T ss_pred             hhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence                      134678999999999986543

The molecular function of this protein is uncertain.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=95.51  E-value=0.39  Score=42.75  Aligned_cols=101  Identities=22%  Similarity=0.213  Sum_probs=71.7

Q ss_pred             CCHHHHHHHHHHHHHH----CCCC---HHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhCCC------CHHHHH
Q 024536          134 KESESMDVYYQEMIKA----YPED---ALVLANYAKFLKEIRGD-------FVKAEEYCGRAILAKPG------DGNVLS  193 (266)
Q Consensus       134 ~~~eeA~~~y~rALel----~P~~---~~al~nlA~~L~~~~gd-------~e~A~~~~erAL~ldP~------da~al~  193 (266)
                      ..+++|++.|.-||-.    ...+   +.++..+|+++. ..++       +.+|...|++|+.....      ...+++
T Consensus        91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR-~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y  169 (214)
T PF09986_consen   91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYR-DLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY  169 (214)
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence            5789999999888654    2222   456677888765 3565       46788888888876532      246777


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHH
Q 024536          194 MYGDLIWINHKDAPRAKSYFDRAVHSAPDDC-HVLASYARFLWD  236 (266)
Q Consensus       194 nla~ll~~~~gd~deAi~~~ekAL~l~P~da-~a~~~lA~ll~~  236 (266)
                      .+|.+..+ .|++++|+.+|.+++...-... ..+..+|.=+|+
T Consensus       170 LigeL~rr-lg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR~~w~  212 (214)
T PF09986_consen  170 LIGELNRR-LGNYDEAKRWFSRVIGSKKASKEPKLKDMARDQWQ  212 (214)
T ss_pred             HHHHHHHH-hCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHH
Confidence            88887766 7999999999999998654333 366677766654

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=95.44  E-value=0.062  Score=51.16  Aligned_cols=86  Identities=16%  Similarity=0.136  Sum_probs=68.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDA----LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRA  209 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~----~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deA  209 (266)
                      ++|..|+..|-+.|+..-.|+    .+|.|.|.+-+ ..|+|-.|+.-+.+|+.++|.+..+++.-|.+++++ .++++|
T Consensus        95 Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~-~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eL-e~~~~a  172 (390)
T KOG0551|consen   95 KRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQL-YLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLEL-ERFAEA  172 (390)
T ss_pred             hhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHH-HHHHHH
Confidence            789999999999999976665    45677765544 358899999999999999999999999988888874 577777


Q ss_pred             HHHHHHHHHhCC
Q 024536          210 KSYFDRAVHSAP  221 (266)
Q Consensus       210 i~~~ekAL~l~P  221 (266)
                      ..+++..+.++-
T Consensus       173 ~nw~ee~~~~d~  184 (390)
T KOG0551|consen  173 VNWCEEGLQIDD  184 (390)
T ss_pred             HHHHhhhhhhhH
Confidence            777776665543

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=95.41  E-value=0.083  Score=37.00  Aligned_cols=40  Identities=23%  Similarity=0.287  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024536          156 VLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYG  196 (266)
Q Consensus       156 al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla  196 (266)
                      .++.+|...+ ..|+|++|..+.+++|+.+|+|..+.....
T Consensus         3 ~lY~lAig~y-kl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~   42 (53)
T PF14853_consen    3 CLYYLAIGHY-KLGEYEKARRYCDALLEIEPDNRQAQSLKE   42 (53)
T ss_dssp             HHHHHHHHHH-HTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred             hHHHHHHHHH-HhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence            4566666665 589999999999999999999999876444

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=95.24  E-value=0.32  Score=44.51  Aligned_cols=108  Identities=14%  Similarity=0.113  Sum_probs=83.3

Q ss_pred             CCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------------------
Q 024536          134 KESESMDVYYQEMIKAYPE----DALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG----------------------  187 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~----~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~----------------------  187 (266)
                      +.++.|..++.++...++.    .+.+.+.++.+++ ..|+..+|...++..+.....                      
T Consensus       160 g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw-~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (352)
T PF02259_consen  160 GNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLW-AQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVI  238 (352)
T ss_pred             CCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccc
Confidence            5788999999999987632    5678888899887 589999999999988881111                      


Q ss_pred             ------------CHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccc
Q 024536          188 ------------DGNVLSMYGDLIWIN-----HKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEED  242 (266)
Q Consensus       188 ------------da~al~nla~ll~~~-----~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~e  242 (266)
                                  -+.++..+|.+....     ..+.++++.+|++|+.++|....+++.+|.++...-+.+.
T Consensus       239 ~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~  310 (352)
T PF02259_consen  239 SSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDP  310 (352)
T ss_pred             cccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhh
Confidence                        124555566655442     2789999999999999999999999999988887755444

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=95.21  E-value=0.0075  Score=59.32  Aligned_cols=76  Identities=13%  Similarity=-0.028  Sum_probs=65.1

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536          168 RGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDD  244 (266)
Q Consensus       168 ~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~  244 (266)
                      .++++.|...|-+||+++|+++..+.+.+.++.. .+++..|+.-+.+||+++|....++..-|.+....+++.+|.
T Consensus        17 ~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK-~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~   92 (476)
T KOG0376|consen   17 DKVFDVAVDLYSKAIELDPNCAIYFANRALAHLK-VESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKAL   92 (476)
T ss_pred             cchHHHHHHHHHHHHhcCCcceeeechhhhhhee-echhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHH
Confidence            5789999999999999999999999998876665 789999999999999999998877666666666666666665

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.18  E-value=0.0056  Score=58.16  Aligned_cols=77  Identities=19%  Similarity=0.084  Sum_probs=64.3

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536          167 IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDD  244 (266)
Q Consensus       167 ~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~  244 (266)
                      ..|.++.|++.|-+||.++|..+..|...+.++.. .++..+|+.-|..|++++|+.+.-+-.-+.+...+|++++|.
T Consensus       126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lk-l~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa  202 (377)
T KOG1308|consen  126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLK-LKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAA  202 (377)
T ss_pred             cCcchhhhhcccccccccCCchhhhcccccceeee-ccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHH
Confidence            36889999999999999999999999999999877 577999999999999999998765444455555566666665

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=95.15  E-value=0.18  Score=55.40  Aligned_cols=115  Identities=17%  Similarity=0.216  Sum_probs=83.4

Q ss_pred             CCHHHHHHHHHHHHHH-CCCCH-------HHHHHHHHHH-----------------------------HHHcCCHHHHHH
Q 024536          134 KESESMDVYYQEMIKA-YPEDA-------LVLANYAKFL-----------------------------KEIRGDFVKAEE  176 (266)
Q Consensus       134 ~~~eeA~~~y~rALel-~P~~~-------~al~nlA~~L-----------------------------~~~~gd~e~A~~  176 (266)
                      .+.++|.+.+++||.. |+...       .++.||=.++                             |+.-..+++|.+
T Consensus      1472 sEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~e 1551 (1710)
T KOG1070|consen 1472 SEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADE 1551 (1710)
T ss_pred             hhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHH
Confidence            7889999999999864 45432       3334432211                             112345678888


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCcccccccccc
Q 024536          177 YCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPD--DCHVLASYARFLWDAGEEEDDDDGDDQ  249 (266)
Q Consensus       177 ~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~--da~a~~~lA~ll~~~G~~~eA~~~~~~  249 (266)
                      +|++.++.--+...+|..|+.+++. +.+.++|..++++|+.--|.  +.......|.+-+..|+.+.+....|.
T Consensus      1552 ll~~m~KKF~q~~~vW~~y~~fLl~-~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEg 1625 (1710)
T KOG1070|consen 1552 LLRLMLKKFGQTRKVWIMYADFLLR-QNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEG 1625 (1710)
T ss_pred             HHHHHHHHhcchhhHHHHHHHHHhc-ccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHH
Confidence            8888888877888888888888876 66778888888888888887  666777888888888888887655443

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.14  E-value=0.12  Score=47.25  Aligned_cols=81  Identities=14%  Similarity=0.051  Sum_probs=50.9

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHH
Q 024536          168 RGDFVKAEEYCGRAILAKPGDGNV------LSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCH------VLASYARFLW  235 (266)
Q Consensus       168 ~gd~e~A~~~~erAL~ldP~da~a------l~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~------a~~~lA~ll~  235 (266)
                      ..+.++|..++++||++--+-...      +..+|.+|..-..|+++|+.+|++|-+.-..+-.      .+.-.|.+-.
T Consensus        86 k~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa  165 (288)
T KOG1586|consen   86 KVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAA  165 (288)
T ss_pred             ccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHH
Confidence            457778888888888775443322      2245655543236789999999998876554321      2334455556


Q ss_pred             HcCCccccccccc
Q 024536          236 DAGEEEDDDDGDD  248 (266)
Q Consensus       236 ~~G~~~eA~~~~~  248 (266)
                      ..+++..|+++.|
T Consensus       166 ~leqY~~Ai~iye  178 (288)
T KOG1586|consen  166 QLEQYSKAIDIYE  178 (288)
T ss_pred             HHHHHHHHHHHHH
Confidence            6678888886643

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.14  E-value=0.097  Score=48.26  Aligned_cols=87  Identities=17%  Similarity=0.186  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH--------hCCCCHH----------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024536          156 VLANYAKFLKEIRGDFVKAEEYCGRAIL--------AKPGDGN----------VLSMYGDLIWINHKDAPRAKSYFDRAV  217 (266)
Q Consensus       156 al~nlA~~L~~~~gd~e~A~~~~erAL~--------ldP~da~----------al~nla~ll~~~~gd~deAi~~~ekAL  217 (266)
                      ++..-|+-|+ ..|+|++|...|+.||.        -.|.+++          .+.||..++.. .++|=++++++...+
T Consensus       180 ~l~q~GN~lf-k~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~-~~e~yevleh~seiL  257 (329)
T KOG0545|consen  180 VLHQEGNRLF-KLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLK-KEEYYEVLEHCSEIL  257 (329)
T ss_pred             HHHHhhhhhh-hhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhh-HHHHHHHHHHHHHHH
Confidence            3344454455 47899999999999976        3466654          46788888876 799999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536          218 HSAPDDCHVLASYARFLWDAGEEEDDD  244 (266)
Q Consensus       218 ~l~P~da~a~~~lA~ll~~~G~~~eA~  244 (266)
                      ...|.+.-|++.-|.+....=+.++|.
T Consensus       258 ~~~~~nvKA~frRakAhaa~Wn~~eA~  284 (329)
T KOG0545|consen  258 RHHPGNVKAYFRRAKAHAAVWNEAEAK  284 (329)
T ss_pred             hcCCchHHHHHHHHHHHHhhcCHHHHH
Confidence            999999999999999888887777776

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.06  E-value=0.12  Score=48.23  Aligned_cols=89  Identities=15%  Similarity=0.181  Sum_probs=71.6

Q ss_pred             CCHHHHHHHHHHHHHHC----C--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024536          134 KESESMDVYYQEMIKAY----P--EDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAP  207 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~----P--~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~d  207 (266)
                      ||.+.|..+|+++-+.+    -  .+-.++.|.+.++. ..+++..|...|.+.+..||.++.+.++-|.++.- .|+..
T Consensus       226 GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~l-g~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY-lg~l~  303 (366)
T KOG2796|consen  226 GDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHL-GQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY-LGKLK  303 (366)
T ss_pred             ccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhee-cccchHHHHHHHhhccccCCCchhhhchHHHHHHH-HHHHH
Confidence            68888999999554332    2  23356666665443 57899999999999999999999999999987754 78999


Q ss_pred             HHHHHHHHHHHhCCCCH
Q 024536          208 RAKSYFDRAVHSAPDDC  224 (266)
Q Consensus       208 eAi~~~ekAL~l~P~da  224 (266)
                      .|++..++++...|...
T Consensus       304 DAiK~~e~~~~~~P~~~  320 (366)
T KOG2796|consen  304 DALKQLEAMVQQDPRHY  320 (366)
T ss_pred             HHHHHHHHHhccCCccc
Confidence            99999999999999754

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=95.04  E-value=0.31  Score=43.31  Aligned_cols=72  Identities=15%  Similarity=0.081  Sum_probs=57.6

Q ss_pred             CCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCcccc
Q 024536          169 GDFVKAEEYCGRAILA-KPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD----CHVLASYARFLWDAGEEEDD  243 (266)
Q Consensus       169 gd~e~A~~~~erAL~l-dP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~d----a~a~~~lA~ll~~~G~~~eA  243 (266)
                      || ++|.+-|-++-.. .=++++..+.+|.+|.  +.|.++|+.++-+++++.+.+    ++++..||.++...++++.|
T Consensus       121 ~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~--krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  121 GD-QEALRRFLQLEGTPELETAELQYALATYYT--KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             Cc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH--ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence            54 6676666554332 2368899999998764  579999999999999998754    88999999999999998876

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.99  E-value=0.054  Score=51.20  Aligned_cols=75  Identities=16%  Similarity=0.139  Sum_probs=35.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536          169 GDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDD  244 (266)
Q Consensus       169 gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~  244 (266)
                      .+|++|+++..--.+.+|.+-..+..+|.+|+. ..+|..|..+|++.-.+.|........+|.-+++++.+.+|.
T Consensus        24 ~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~-~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL   98 (459)
T KOG4340|consen   24 ARYADAIQLLGSELERSPRSRAGLSLLGYCYYR-LQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL   98 (459)
T ss_pred             hhHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence            334444444444444444444444444444444 234444555555554444544444444444444444444444

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=94.95  E-value=0.14  Score=49.51  Aligned_cols=125  Identities=14%  Similarity=0.056  Sum_probs=81.5

Q ss_pred             CCCCHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 024536          132 SGKESESMDVYYQE-MIKAYPEDALVLANYAKFLKEI--------RGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN  202 (266)
Q Consensus       132 ~~~~~eeA~~~y~r-ALel~P~~~~al~nlA~~L~~~--------~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~  202 (266)
                      ..|+.++|+..+.. .....+.+++.+..+|.++...        ...+++|..+|+++.+++|+. ..-.|++.++.. 
T Consensus       194 ~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~-  271 (374)
T PF13281_consen  194 KPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLML-  271 (374)
T ss_pred             cCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHH-
Confidence            34788999999988 5666778899999999876431        224789999999999999754 444567766644 


Q ss_pred             cCCHHHHH-HHHHHHHHh-----------CCCCHHHHHHHHHHHHHcCCcccccccccccccCCCCCC
Q 024536          203 HKDAPRAK-SYFDRAVHS-----------APDDCHVLASYARFLWDAGEEEDDDDGDDQETCASQPNI  258 (266)
Q Consensus       203 ~gd~deAi-~~~ekAL~l-----------~P~da~a~~~lA~ll~~~G~~~eA~~~~~~~~~~~~~~~  258 (266)
                      .|...+.. ++-+-.+.+           .-.+-+.+..++.+..-.++.+.|++-.+++-.+.||.+
T Consensus       272 ~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W  339 (374)
T PF13281_consen  272 AGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW  339 (374)
T ss_pred             cCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence            44322222 211111111           113445566777778888888888876666555556554

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=94.90  E-value=0.24  Score=40.00  Aligned_cols=86  Identities=14%  Similarity=0.084  Sum_probs=63.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHc---C-------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDA---LVLANYAKFLKEIR---G-------DFVKAEEYCGRAILAKPGDGNVLSMYGDLIW  200 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~---~al~nlA~~L~~~~---g-------d~e~A~~~~erAL~ldP~da~al~nla~ll~  200 (266)
                      |++-+|++..+..+..++++.   .++..-|.+++...   .       -+-.|.++|.+++.+.|+.+..++.+|.-+-
T Consensus        10 GnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la~~l~   89 (111)
T PF04781_consen   10 GNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELASQLG   89 (111)
T ss_pred             cCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHHHHhh
Confidence            688999999999999999887   44455565553211   1       1356888999999999999888888886542


Q ss_pred             HHcCCHHHHHHHHHHHHHhC
Q 024536          201 INHKDAPRAKSYFDRAVHSA  220 (266)
Q Consensus       201 ~~~gd~deAi~~~ekAL~l~  220 (266)
                      - ...|+++....+++|.+.
T Consensus        90 s-~~~Ykk~v~kak~~Lsv~  108 (111)
T PF04781_consen   90 S-VKYYKKAVKKAKRGLSVT  108 (111)
T ss_pred             h-HHHHHHHHHHHHHHhccc
Confidence            2 345788888888887653

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.88  E-value=0.24  Score=45.39  Aligned_cols=92  Identities=15%  Similarity=0.124  Sum_probs=63.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALV------LANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG------NVLSMYGDLIWI  201 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~a------l~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da------~al~nla~ll~~  201 (266)
                      .+.++|..++++||++..+-..+      +..+|.++.....++++|+.+|++|-+---.+-      ..+.-.|.+..+
T Consensus        87 ~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~  166 (288)
T KOG1586|consen   87 VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQ  166 (288)
T ss_pred             cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHH
Confidence            46778888888888887654432      335676664344789999999999988644332      123333433333


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHH
Q 024536          202 NHKDAPRAKSYFDRAVHSAPDDCHV  226 (266)
Q Consensus       202 ~~gd~deAi~~~ekAL~l~P~da~a  226 (266)
                       .++|.+|+..|++.....-++.-.
T Consensus       167 -leqY~~Ai~iyeqva~~s~~n~LL  190 (288)
T KOG1586|consen  167 -LEQYSKAIDIYEQVARSSLDNNLL  190 (288)
T ss_pred             -HHHHHHHHHHHHHHHHHhccchHH
Confidence             578999999999999988887654

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=94.80  E-value=0.22  Score=50.20  Aligned_cols=100  Identities=16%  Similarity=0.092  Sum_probs=58.7

Q ss_pred             CCCCCHHHHHHHHHHHHH-----HCCCCHHHHHHHHHHHHHH---cC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024536          131 DSGKESESMDVYYQEMIK-----AYPEDALVLANYAKFLKEI---RG-DFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI  201 (266)
Q Consensus       131 ~~~~~~eeA~~~y~rALe-----l~P~~~~al~nlA~~L~~~---~g-d~e~A~~~~erAL~ldP~da~al~nla~ll~~  201 (266)
                      +...+.++|+.+|++|.+     +.-.++.+.+.+|.++...   .. +++.|..+|.+|-.....  .+.+.+|.++..
T Consensus       260 g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~--~a~~~lg~~~~~  337 (552)
T KOG1550|consen  260 GVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP--DAQYLLGVLYET  337 (552)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc--hHHHHHHHHHHc
Confidence            344788999999988877     1112555666677665421   12 567777777777666543  344455655544


Q ss_pred             Hc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 024536          202 NH--KDAPRAKSYFDRAVHSAPDDCHVLASYARFL  234 (266)
Q Consensus       202 ~~--gd~deAi~~~ekAL~l~P~da~a~~~lA~ll  234 (266)
                      ..  .|+.+|..||.+|...  .+..+...+|.++
T Consensus       338 g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y  370 (552)
T KOG1550|consen  338 GTKERDYRRAFEYYSLAAKA--GHILAIYRLALCY  370 (552)
T ss_pred             CCccccHHHHHHHHHHHHHc--CChHHHHHHHHHH
Confidence            22  3456777777766654  3444555555433

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=94.77  E-value=0.13  Score=52.64  Aligned_cols=112  Identities=20%  Similarity=0.245  Sum_probs=85.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH-H-cCCHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAK--PGDGNVLSMYGDLIWI-N-HKDAPRA  209 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ld--P~da~al~nla~ll~~-~-~gd~deA  209 (266)
                      +-++...+.|.++|.+.--.|.+..|||.+|. ...-+++|.+.|+|.|.+-  |+--++|..|-..... . ....++|
T Consensus       491 gtfestk~vYdriidLriaTPqii~NyAmfLE-eh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEra  569 (835)
T KOG2047|consen  491 GTFESTKAVYDRIIDLRIATPQIIINYAMFLE-EHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERA  569 (835)
T ss_pred             ccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHH
Confidence            56788889999999999999999999999885 4677899999999999984  6666777776543322 1 2468999


Q ss_pred             HHHHHHHHHhCCCC-H-HHHHHHHHHHHHcCCccccccc
Q 024536          210 KSYFDRAVHSAPDD-C-HVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       210 i~~~ekAL~l~P~d-a-~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      ..+|++||+..|.. + .++..||.+--+.|-...|+.+
T Consensus       570 RdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsi  608 (835)
T KOG2047|consen  570 RDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSI  608 (835)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            99999999999832 2 2455666666666655555544

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=94.73  E-value=0.081  Score=33.24  Aligned_cols=30  Identities=27%  Similarity=0.288  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024536          154 ALVLANYAKFLKEIRGDFVKAEEYCGRAILA  184 (266)
Q Consensus       154 ~~al~nlA~~L~~~~gd~e~A~~~~erAL~l  184 (266)
                      +.++.++|.++. ..|++++|+.++++|+.+
T Consensus         2 a~~~~~la~~~~-~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYR-AQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHH-HCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-hhhhcchhhHHHHHHHHH
Confidence            457899999886 589999999999999985

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=94.69  E-value=0.18  Score=51.03  Aligned_cols=108  Identities=12%  Similarity=0.019  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          136 SESMDVYYQEMIKAYPEDALVLANY--AKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       136 ~eeA~~~y~rALel~P~~~~al~nl--A~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      -.-|+..|..-+.++|.++.++...  ...+ ...++...|...+..++..+|+++.++.+++..+...+..+..+..+.
T Consensus        47 ~~~~~~a~~~~~~~~~~~~~llla~~lsi~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~  125 (620)
T COG3914          47 QALAIYALLLGIAINDVNPELLLAAFLSILL-APLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADIS  125 (620)
T ss_pred             hhHHHHHHHccCccCCCCHHHHHHHHHHhhc-cccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHH
Confidence            3446677777788999999875443  4333 245777889999999999999999999999988877666677777788


Q ss_pred             HHHHHhCCCCHHHHHHH------HHHHHHcCCccccc
Q 024536          214 DRAVHSAPDDCHVLASY------ARFLWDAGEEEDDD  244 (266)
Q Consensus       214 ekAL~l~P~da~a~~~l------A~ll~~~G~~~eA~  244 (266)
                      +.|....|++.+++..+      +.++..+++..++.
T Consensus       126 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  162 (620)
T COG3914         126 EIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAE  162 (620)
T ss_pred             HHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHH
Confidence            88999999999987777      66666667666665

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=94.64  E-value=0.087  Score=50.18  Aligned_cols=83  Identities=11%  Similarity=-0.027  Sum_probs=70.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 024536          160 YAKFLKEIRGDFVKAEEYCGRAILAKPGDG----NVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLW  235 (266)
Q Consensus       160 lA~~L~~~~gd~e~A~~~~erAL~ldP~da----~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~  235 (266)
                      =|+.++ ..++|..|..+|-++|+..-.|+    ..|.|.|.+-+. .|+|-.|+.-+.+|+.++|.+.-++..-|.+++
T Consensus        87 eGN~~f-K~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~-l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~  164 (390)
T KOG0551|consen   87 EGNEYF-KEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLY-LGNYRSALNDCSAALKLKPTHLKAYIRGAKCLL  164 (390)
T ss_pred             HhHHHH-HhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHH
Confidence            366665 46889999999999999876554    457777776655 689999999999999999999999999999999


Q ss_pred             HcCCccccc
Q 024536          236 DAGEEEDDD  244 (266)
Q Consensus       236 ~~G~~~eA~  244 (266)
                      +..++++|.
T Consensus       165 eLe~~~~a~  173 (390)
T KOG0551|consen  165 ELERFAEAV  173 (390)
T ss_pred             HHHHHHHHH
Confidence            999987777

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=94.58  E-value=0.14  Score=45.74  Aligned_cols=62  Identities=18%  Similarity=0.196  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024536          139 MDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI  201 (266)
Q Consensus       139 A~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~  201 (266)
                      |+.+|++|+.+.|++...|+++|.+.. ..++.=.|.-+|-|++...--.+.+..|+..++..
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~-~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLAS-YQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHH-HTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhc-cccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            789999999999999999999998765 57999999999999998765568899999877654

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=94.52  E-value=0.61  Score=47.05  Aligned_cols=83  Identities=14%  Similarity=0.090  Sum_probs=65.3

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---cCCHHHH
Q 024536          135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIR--GDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN---HKDAPRA  209 (266)
Q Consensus       135 ~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~--gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~---~gd~deA  209 (266)
                      +.+.|..+|.+|.+..  ++.+.+.+|.++....  .|+.+|..+|.+|...  .+..++++++.++..-   ..+..+|
T Consensus       308 d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A  383 (552)
T KOG1550|consen  308 DYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELA  383 (552)
T ss_pred             cHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHH
Confidence            8999999999998875  4556677777664323  4678999999999764  6778888999877532   2489999


Q ss_pred             HHHHHHHHHhCC
Q 024536          210 KSYFDRAVHSAP  221 (266)
Q Consensus       210 i~~~ekAL~l~P  221 (266)
                      ..||++|.+..+
T Consensus       384 ~~~~k~aA~~g~  395 (552)
T KOG1550|consen  384 FAYYKKAAEKGN  395 (552)
T ss_pred             HHHHHHHHHccC
Confidence            999999999983

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=94.42  E-value=0.068  Score=53.69  Aligned_cols=90  Identities=14%  Similarity=-0.042  Sum_probs=76.2

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536          169 GDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN--HKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       169 gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~--~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      .....|+..|.+|+...|+....+.|++.++++.  .+|.-.|+.-+..|++++|-.-.+++.|+.++.+.+++.+|++-
T Consensus       388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~  467 (758)
T KOG1310|consen  388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSC  467 (758)
T ss_pred             HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhh
Confidence            4467899999999999999999999999877542  47888899999999999999999999999999999999999976


Q ss_pred             ccccccCCCCCC
Q 024536          247 DDQETCASQPNI  258 (266)
Q Consensus       247 ~~~~~~~~~~~~  258 (266)
                      -....+.+|.++
T Consensus       468 ~~alq~~~Ptd~  479 (758)
T KOG1310|consen  468 HWALQMSFPTDV  479 (758)
T ss_pred             HHHHhhcCchhh
Confidence            555555555444

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=94.31  E-value=0.41  Score=49.21  Aligned_cols=121  Identities=18%  Similarity=0.171  Sum_probs=91.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------------CHHH
Q 024536          134 KESESMDVYYQEMIKAYPED----ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG------------------DGNV  191 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~----~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~------------------da~a  191 (266)
                      ++.+.|...|.+|++.+=..    +.+|.++|.+-. ...+++.|.++.++|...--.                  ...+
T Consensus       401 ~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemEl-rh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlki  479 (835)
T KOG2047|consen  401 GDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMEL-RHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKI  479 (835)
T ss_pred             CcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHH-hhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHH
Confidence            57889999999998886443    467788886543 457789999999998876322                  2345


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccccccccccCCCC
Q 024536          192 LSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDDQETCASQP  256 (266)
Q Consensus       192 l~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~~~~~~~~~  256 (266)
                      |..|+.+. +.-|-++.....|++.|++.--.|++..|||.+|-+..-++++-+.-|..-.++++
T Consensus       480 Ws~y~Dle-Es~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~  543 (835)
T KOG2047|consen  480 WSMYADLE-ESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKW  543 (835)
T ss_pred             HHHHHHHH-HHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCC
Confidence            66777655 44678888889999999999889999999999888888888888776665555544

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.29  E-value=0.37  Score=44.42  Aligned_cols=110  Identities=14%  Similarity=0.135  Sum_probs=77.2

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHH------HHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCH-HHHHHHHHHH
Q 024536          132 SGKESESMDVYYQEMIKAYPEDALVL------ANYAKFLKEIRGDFVKAEEYCGRAILAK-----PGDG-NVLSMYGDLI  199 (266)
Q Consensus       132 ~~~~~eeA~~~y~rALel~P~~~~al------~nlA~~L~~~~gd~e~A~~~~erAL~ld-----P~da-~al~nla~ll  199 (266)
                      +-+++++|..++.+|++..-+|...|      -..+.++. ....+.++..+|++|..+-     |+-+ .++-..|.++
T Consensus        43 nAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLak-e~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~l  121 (308)
T KOG1585|consen   43 NAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAK-ELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKAL  121 (308)
T ss_pred             hhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Confidence            34789999999999997766654333      22233333 4577899999999999864     4433 3444455555


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCCccccc
Q 024536          200 WINHKDAPRAKSYFDRAVHSAPDDCH------VLASYARFLWDAGEEEDDD  244 (266)
Q Consensus       200 ~~~~gd~deAi~~~ekAL~l~P~da~------a~~~lA~ll~~~G~~~eA~  244 (266)
                       + ..+.++|+++|++++++--++-+      .+...+++|....+++||.
T Consensus       122 -e-nv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa  170 (308)
T KOG1585|consen  122 -E-NVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAA  170 (308)
T ss_pred             -h-cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHH
Confidence             3 46899999999999988665433      3556778888888888886

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=94.25  E-value=0.76  Score=45.97  Aligned_cols=62  Identities=16%  Similarity=0.156  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 024536          136 SESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGD  197 (266)
Q Consensus       136 ~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~  197 (266)
                      +.+--..|.++|..+|+++.+|..-|...++..-..+.|.++|.++|+.+|+++..|.-|-.
T Consensus       121 ~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfr  182 (568)
T KOG2396|consen  121 YGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFR  182 (568)
T ss_pred             hhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHH
Confidence            56667799999999999999999999888876666999999999999999999999876654

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.24  E-value=0.27  Score=47.54  Aligned_cols=81  Identities=11%  Similarity=-0.027  Sum_probs=61.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDA-LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY  212 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~-~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~  212 (266)
                      .+|+-|+.+++-++..+-... .+-..+|.+.+ ..|||++|...|+-+...+--+++.+.++|.+.+- .|.|.+|...
T Consensus        36 rDytGAislLefk~~~~~EEE~~~~lWia~C~f-hLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~Fy-Lg~Y~eA~~~  113 (557)
T KOG3785|consen   36 RDYTGAISLLEFKLNLDREEEDSLQLWIAHCYF-HLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFY-LGQYIEAKSI  113 (557)
T ss_pred             ccchhHHHHHHHhhccchhhhHHHHHHHHHHHH-hhccHHHHHHHHHHHhccCCCCcccchhHHHHHHH-HHHHHHHHHH
Confidence            788999999988886665544 22233344444 46999999999999999887788999999987765 6889999887


Q ss_pred             HHHH
Q 024536          213 FDRA  216 (266)
Q Consensus       213 ~ekA  216 (266)
                      -.+|
T Consensus       114 ~~ka  117 (557)
T KOG3785|consen  114 AEKA  117 (557)
T ss_pred             HhhC
Confidence            6665

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=94.14  E-value=0.14  Score=49.57  Aligned_cols=111  Identities=19%  Similarity=0.022  Sum_probs=78.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--H----HHHHHHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDA-----LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD--G----NVLSMYGDLIWIN  202 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~-----~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d--a----~al~nla~ll~~~  202 (266)
                      .++.+++.+.+-.+.+.-..+     .++..++.+.. ..+-+++++++|+.|+.+.-++  +    .++..++.++.+ 
T Consensus        97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahl-gls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~-  174 (518)
T KOG1941|consen   97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHL-GLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQ-  174 (518)
T ss_pred             HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhh-hHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHH-
Confidence            455566666655555533332     34444554432 3567899999999999986543  3    467778887766 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCCccccccc
Q 024536          203 HKDAPRAKSYFDRAVHSAPDD----------CHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       203 ~gd~deAi~~~ekAL~l~P~d----------a~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      .+|+++|.-+..+|.++-...          +.+++.++..|..+|+.-+|.+-
T Consensus       175 l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~  228 (518)
T KOG1941|consen  175 LKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMEC  228 (518)
T ss_pred             HHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHH
Confidence            579999999999999986532          34678899999999999988753

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=94.11  E-value=0.31  Score=41.43  Aligned_cols=85  Identities=9%  Similarity=0.001  Sum_probs=64.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      .++++++.++..+--+.|+.+.+..--|++.. ..|++.+|...++......+..+.+...++.+++. .+|.+- ..+-
T Consensus        24 ~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i-~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a-l~Dp~W-r~~A  100 (153)
T TIGR02561        24 ADPYDAQAMLDALRVLRPNLKELDMFDGWLLI-ARGNYDEAARILRELLSSAGAPPYGKALLALCLNA-KGDAEW-HVHA  100 (153)
T ss_pred             CCHHHHHHHHHHHHHhCCCccccchhHHHHHH-HcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh-cCChHH-HHHH
Confidence            57788888888888888999888887777554 67889999999999988888888888888887765 676543 4455


Q ss_pred             HHHHHhCC
Q 024536          214 DRAVHSAP  221 (266)
Q Consensus       214 ekAL~l~P  221 (266)
                      +.+++.++
T Consensus       101 ~~~le~~~  108 (153)
T TIGR02561       101 DEVLARDA  108 (153)
T ss_pred             HHHHHhCC
Confidence            55555544

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.79  E-value=0.47  Score=42.11  Aligned_cols=87  Identities=11%  Similarity=0.136  Sum_probs=48.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAK  210 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~---~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi  210 (266)
                      +++++|+..++.++..--+.-   .+-.++|.++. ..+.+++|+..+.....-+- .+...-..|.++.. +||-++|+
T Consensus       103 ~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~-q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~-kg~k~~Ar  179 (207)
T COG2976         103 NNLDKAEAQLKQALAQTKDENLKALAALRLARVQL-QQKKADAALKTLDTIKEESW-AAIVAELRGDILLA-KGDKQEAR  179 (207)
T ss_pred             ccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHH-HhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHH-cCchHHHH
Confidence            566777777777665433322   23345566655 35666766665554332211 12223345666654 67777777


Q ss_pred             HHHHHHHHhCCCC
Q 024536          211 SYFDRAVHSAPDD  223 (266)
Q Consensus       211 ~~~ekAL~l~P~d  223 (266)
                      .-|++|+...+..
T Consensus       180 ~ay~kAl~~~~s~  192 (207)
T COG2976         180 AAYEKALESDASP  192 (207)
T ss_pred             HHHHHHHHccCCh
Confidence            7777777776443

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.78  E-value=0.62  Score=46.58  Aligned_cols=114  Identities=12%  Similarity=-0.004  Sum_probs=91.0

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCH----HHHHHHHHHHHH
Q 024536          132 SGKESESMDVYYQEMIKAYPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRAILAK---PGDG----NVLSMYGDLIWI  201 (266)
Q Consensus       132 ~~~~~eeA~~~y~rALel~P~~~---~al~nlA~~L~~~~gd~e~A~~~~erAL~ld---P~da----~al~nla~ll~~  201 (266)
                      .+..+.+++++++..+...|.+-   ..+..+|.+|+....+++.|...+++|+.+-   |..-    +++..++.++.+
T Consensus        21 ~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~  100 (629)
T KOG2300|consen   21 GPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQ  100 (629)
T ss_pred             CChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHH
Confidence            34688999999999999988764   4567788888777899999999999999875   4432    345567777766


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHcCCcccccc
Q 024536          202 NHKDAPRAKSYFDRAVHSAPDDCHV----LASYARFLWDAGEEEDDDD  245 (266)
Q Consensus       202 ~~gd~deAi~~~ekAL~l~P~da~a----~~~lA~ll~~~G~~~eA~~  245 (266)
                      ....+..|...+++||++.-..+.+    .+.+|.++.-..++.-|.+
T Consensus       101 ~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~e  148 (629)
T KOG2300|consen  101 LAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALE  148 (629)
T ss_pred             hcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHH
Confidence            6668999999999999999988764    5678888888888887774

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=93.73  E-value=0.76  Score=44.84  Aligned_cols=100  Identities=9%  Similarity=0.089  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC---HHHHHH
Q 024536          136 SESMDVYYQEMIKAYPEDALVLANYAKFLKEIRG-DFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKD---APRAKS  211 (266)
Q Consensus       136 ~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~g-d~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd---~deAi~  211 (266)
                      .++-+.+...+|+.+|+..-+|+...++|...-. ++..-++++++++++||-+-.+|...=.+.-+.+..   ..+=++
T Consensus        91 ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~  170 (421)
T KOG0529|consen   91 LDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELE  170 (421)
T ss_pred             hHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHH
Confidence            4556778899999999999999999998853222 478999999999999999888876544444333333   677789


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHH
Q 024536          212 YFDRAVHSAPDDCHVLASYARFLW  235 (266)
Q Consensus       212 ~~ekAL~l~P~da~a~~~lA~ll~  235 (266)
                      +..++|.-++.|-.+|++-..++-
T Consensus       171 ftt~~I~~nfSNYsaWhyRs~lL~  194 (421)
T KOG0529|consen  171 FTTKLINDNFSNYSAWHYRSLLLS  194 (421)
T ss_pred             HHHHHHhccchhhhHHHHHHHHHH
Confidence            999999999999999988777665

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=93.64  E-value=1.1  Score=43.85  Aligned_cols=108  Identities=17%  Similarity=0.126  Sum_probs=74.4

Q ss_pred             CHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHHcCCHHHHHH
Q 024536          135 ESESMDVYYQEMIKAYPED--ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLI-WINHKDAPRAKS  211 (266)
Q Consensus       135 ~~eeA~~~y~rALel~P~~--~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll-~~~~gd~deAi~  211 (266)
                      +-..|.+.-+++-.+--.+  +.++..-+..-. ..|+++.|.+-|+..+. +|.--. +...|.++ .+..|+.+.|+.
T Consensus        99 da~lARkmt~~~~~llssDqepLIhlLeAQaal-~eG~~~~Ar~kfeAMl~-dPEtRl-lGLRgLyleAqr~GareaAr~  175 (531)
T COG3898          99 DASLARKMTARASKLLSSDQEPLIHLLEAQAAL-LEGDYEDARKKFEAMLD-DPETRL-LGLRGLYLEAQRLGAREAARH  175 (531)
T ss_pred             chHHHHHHHHHHHhhhhccchHHHHHHHHHHHH-hcCchHHHHHHHHHHhc-ChHHHH-HhHHHHHHHHHhcccHHHHHH
Confidence            3366777777776443333  344444444332 57999999999987764 444222 11122211 234689999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccc
Q 024536          212 YFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDD  245 (266)
Q Consensus       212 ~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~  245 (266)
                      |-++|-...|.-++++...-..++..|++++|++
T Consensus       176 yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~Alk  209 (531)
T COG3898         176 YAERAAEKAPQLPWAARATLEARCAAGDWDGALK  209 (531)
T ss_pred             HHHHHHhhccCCchHHHHHHHHHHhcCChHHHHH
Confidence            9999999999999998888888999999999995

>PRK10941 hypothetical protein; Provisional

Probab=93.36  E-value=0.59  Score=43.17  Aligned_cols=61  Identities=13%  Similarity=-0.048  Sum_probs=55.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMY  195 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nl  195 (266)
                      +++++|+++.++++.++|+++.-+.-.|.++. ..+.+..|..-++.-|+.-|+++.+...-
T Consensus       195 ~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~-qL~c~~~A~~DL~~fl~~~P~dp~a~~ik  255 (269)
T PRK10941        195 KQMELALRASEALLQFDPEDPYEIRDRGLIYA-QLDCEHVALSDLSYFVEQCPEDPISEMIR  255 (269)
T ss_pred             CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHhCCCchhHHHHH
Confidence            89999999999999999999999999998775 68999999999999999999999876543

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=93.22  E-value=0.26  Score=28.99  Aligned_cols=29  Identities=31%  Similarity=0.622  Sum_probs=15.9

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 024536          205 DAPRAKSYFDRAVHSAPDDCHVLASYARF  233 (266)
Q Consensus       205 d~deAi~~~ekAL~l~P~da~a~~~lA~l  233 (266)
                      +.++|..+|++++...|.++.+|..++.+
T Consensus         2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~   30 (33)
T smart00386        2 DIERARKIYERALEKFPKSVELWLKYAEF   30 (33)
T ss_pred             cHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            44555555555555555555555555443

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=93.22  E-value=0.46  Score=50.22  Aligned_cols=109  Identities=22%  Similarity=0.276  Sum_probs=73.9

Q ss_pred             CCHHHHHHHHHHHHHHC-------------------CCC-----HHHHHHHHHHHHHHcCCHHHHHHHHHHH--------
Q 024536          134 KESESMDVYYQEMIKAY-------------------PED-----ALVLANYAKFLKEIRGDFVKAEEYCGRA--------  181 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~-------------------P~~-----~~al~nlA~~L~~~~gd~e~A~~~~erA--------  181 (266)
                      +-+++|+.+|++.-+.|                   -..     -..|+|||..|. ..+|.+.|++||+++        
T Consensus       814 gMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Le-ar~Di~~AleyyEK~~~hafev~  892 (1416)
T KOG3617|consen  814 GMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLE-ARRDIEAALEYYEKAGVHAFEVF  892 (1416)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHH-hhccHHHHHHHHHhcCChHHHHH
Confidence            66788888887654332                   111     246788888775 589999999999875        


Q ss_pred             --HHhCC----------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------------------hCCCCHHHHH
Q 024536          182 --ILAKP----------GDGNVLSMYGDLIWINHKDAPRAKSYFDRAVH---------------------SAPDDCHVLA  228 (266)
Q Consensus       182 --L~ldP----------~da~al~nla~ll~~~~gd~deAi~~~ekAL~---------------------l~P~da~a~~  228 (266)
                        |.-+|          .|+..|.+.|.++ +..|+.|.|+.+|..|-.                     ....|-.+.+
T Consensus       893 rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYl-ES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcY  971 (1416)
T KOG3617|consen  893 RMLKEYPKQIEQYVRRKRDESLYSWWGQYL-ESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACY  971 (1416)
T ss_pred             HHHHhChHHHHHHHHhccchHHHHHHHHHH-hcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHH
Confidence              33344          3455666677655 568999999999987632                     2334555666


Q ss_pred             HHHHHHHHcCCccccc
Q 024536          229 SYARFLWDAGEEEDDD  244 (266)
Q Consensus       229 ~lA~ll~~~G~~~eA~  244 (266)
                      .+|+.|-..|+..+|+
T Consensus       972 hlaR~YEn~g~v~~Av  987 (1416)
T KOG3617|consen  972 HLARMYENDGDVVKAV  987 (1416)
T ss_pred             HHHHHhhhhHHHHHHH
Confidence            6777777777766666

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=93.20  E-value=1.3  Score=45.04  Aligned_cols=110  Identities=14%  Similarity=0.124  Sum_probs=96.0

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024536          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAK-PGDGNVLSMYGDLIWINHKDAPRAKS  211 (266)
Q Consensus       133 ~~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ld-P~da~al~nla~ll~~~~gd~deAi~  211 (266)
                      .++++....+|++++.---...++|.+|+..+. ..|+.+-|...+.+|.++. |.-+..+..++.+- +..|+++.|..
T Consensus       310 ~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~-~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~-e~~~n~~~A~~  387 (577)
T KOG1258|consen  310 LGDFSRVFILFERCLIPCALYDEFWIKYARWME-SSGDVSLANNVLARACKIHVKKTPIIHLLEARFE-ESNGNFDDAKV  387 (577)
T ss_pred             cccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHH-HcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH-HhhccHHHHHH
Confidence            378899999999999999999999999999876 4699999998888888874 77778887777665 56899999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536          212 YFDRAVHSAPDDCHVLASYARFLWDAGEEEDDD  244 (266)
Q Consensus       212 ~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~  244 (266)
                      ++++...--|+...+..-.+......|..+.+.
T Consensus       388 ~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~  420 (577)
T KOG1258|consen  388 ILQRIESEYPGLVEVVLRKINWERRKGNLEDAN  420 (577)
T ss_pred             HHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence            999999999999988888888888888888877

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=93.05  E-value=0.22  Score=50.68  Aligned_cols=105  Identities=13%  Similarity=0.057  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHH
Q 024536          138 SMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN--VLSMYGDLIWINHKDAPRAKSYFDR  215 (266)
Q Consensus       138 eA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~--al~nla~ll~~~~gd~deAi~~~ek  215 (266)
                      .-..+.-.+++.+|.++.+|+.-+ +++..+|+.-+|..|+.+|+...|.+..  ++..+|.++.+ .|...+|--++..
T Consensus       197 ~~~~~~~~glq~~~~sw~lH~~as-~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~R-aG~sadA~iILhA  274 (886)
T KOG4507|consen  197 DIGHLIHEGLQKNTSSWVLHNMAS-FYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHR-AGFSADAAVILHA  274 (886)
T ss_pred             HHHHHHHHhhhcCchhHHHHHHHH-HHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHH-cccccchhheeeh
Confidence            334466778888888887765544 5566788888899999998888877653  56667877765 7888888888888


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536          216 AVHSAPDDCHVLASYARFLWDAGEEEDDD  244 (266)
Q Consensus       216 AL~l~P~da~a~~~lA~ll~~~G~~~eA~  244 (266)
                      |+.-.|.-+.-++.++.++...+++-.-.
T Consensus       275 A~~dA~~~t~n~y~l~~i~aml~~~N~S~  303 (886)
T KOG4507|consen  275 ALDDADFFTSNYYTLGNIYAMLGEYNHSV  303 (886)
T ss_pred             hccCCccccccceeHHHHHHHHhhhhhhh
Confidence            88888877666777777777776654433

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=93.02  E-value=0.43  Score=44.10  Aligned_cols=60  Identities=17%  Similarity=-0.020  Sum_probs=55.1

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 024536          167 IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVL  227 (266)
Q Consensus       167 ~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~  227 (266)
                      ..++++.|..+.++.+.++|+++.-+.-.|.+|.+ .+.+.-|+.-++..++.-|+++.+-
T Consensus       193 ~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~q-l~c~~vAl~dl~~~~~~~P~~~~a~  252 (269)
T COG2912         193 RELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQ-LGCYHVALEDLSYFVEHCPDDPIAE  252 (269)
T ss_pred             HhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHh-cCCchhhHHHHHHHHHhCCCchHHH
Confidence            57889999999999999999999999999998877 6889999999999999999998764

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=92.88  E-value=1.8  Score=41.48  Aligned_cols=97  Identities=13%  Similarity=0.105  Sum_probs=66.3

Q ss_pred             HHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------h-----CC------------CCHH---HHHHHH
Q 024536          146 MIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAIL---------A-----KP------------GDGN---VLSMYG  196 (266)
Q Consensus       146 ALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~---------l-----dP------------~da~---al~nla  196 (266)
                      .|+.+|-+.+.+..++.++. .+||++.|.++.+|||-         .     ++            .|-.   +++.+.
T Consensus        32 ll~~~PyHidtLlqls~v~~-~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i  110 (360)
T PF04910_consen   32 LLQKNPYHIDTLLQLSEVYR-QQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI  110 (360)
T ss_pred             HHHHCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence            35678889999999998876 58999999888888864         1     22            2222   233444


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHH-HHHHHcCCccccc
Q 024536          197 DLIWINHKDAPRAKSYFDRAVHSAPD-DCHVLASYA-RFLWDAGEEEDDD  244 (266)
Q Consensus       197 ~ll~~~~gd~deAi~~~ekAL~l~P~-da~a~~~lA-~ll~~~G~~~eA~  244 (266)
                      ..+.+ +|-+..|.++++-.+.+||. |+......- .+....++++--+
T Consensus       111 ~~L~~-RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li  159 (360)
T PF04910_consen  111 QSLGR-RGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLI  159 (360)
T ss_pred             HHHHh-cCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHH
Confidence            44444 79999999999999999998 886533333 3344445554344

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=92.85  E-value=1.9  Score=36.72  Aligned_cols=72  Identities=17%  Similarity=0.047  Sum_probs=63.4

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 024536          168 RGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEE  240 (266)
Q Consensus       168 ~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~  240 (266)
                      ..+.++++..+...--+.|+.+++...-|+++.. +|++++|+.+|+...+-.+..+.....++.++.-.|+.
T Consensus        23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~-rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp   94 (153)
T TIGR02561        23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIA-RGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA   94 (153)
T ss_pred             cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHH-cCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence            6889999999999999999999999888887765 89999999999999999999888777788777777764

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=92.71  E-value=1.1  Score=34.32  Aligned_cols=55  Identities=16%  Similarity=0.104  Sum_probs=40.0

Q ss_pred             HcCCHHHHHHHHHHHHHhCC----CC-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 024536          167 IRGDFVKAEEYCGRAILAKP----GD-----GNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPD  222 (266)
Q Consensus       167 ~~gd~e~A~~~~erAL~ldP----~d-----a~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~  222 (266)
                      ..+||.+|.+.+.+.+....    ..     ..++.++|.+... .|++++|+..++.||.+...
T Consensus        10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~-~G~~~~A~~~l~eAi~~Are   73 (94)
T PF12862_consen   10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRR-FGHYEEALQALEEAIRLARE   73 (94)
T ss_pred             HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHH
Confidence            36888888666666665432    22     4566778877665 79999999999999998763

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=92.60  E-value=1.3  Score=46.99  Aligned_cols=101  Identities=12%  Similarity=0.032  Sum_probs=69.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +..++|..+++..-...+++-..+-.+-.++. ..+.+++|..+|++|+..+|+ -+.++.+-.++.+ .++|.+-.+.-
T Consensus        57 gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~-d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR-~~~yk~qQkaa  133 (932)
T KOG2053|consen   57 GKGDEALKLLEALYGLKGTDDLTLQFLQNVYR-DLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVR-EKSYKKQQKAA  133 (932)
T ss_pred             cCchhHHHHHhhhccCCCCchHHHHHHHHHHH-HHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            45578887777777777777777777776665 579999999999999999999 6666666666544 34444333333


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDA  237 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~  237 (266)
                      -+.-+..|.+++.+.+...++.+.
T Consensus       134 ~~LyK~~pk~~yyfWsV~Slilqs  157 (932)
T KOG2053|consen  134 LQLYKNFPKRAYYFWSVISLILQS  157 (932)
T ss_pred             HHHHHhCCcccchHHHHHHHHHHh
Confidence            333337899888765555554443

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=92.58  E-value=0.37  Score=28.29  Aligned_cols=29  Identities=21%  Similarity=0.512  Sum_probs=16.8

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q 024536          135 ESESMDVYYQEMIKAYPEDALVLANYAKF  163 (266)
Q Consensus       135 ~~eeA~~~y~rALel~P~~~~al~nlA~~  163 (266)
                      +.++|...|++++...|.++.+|..|+.+
T Consensus         2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~   30 (33)
T smart00386        2 DIERARKIYERALEKFPKSVELWLKYAEF   30 (33)
T ss_pred             cHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            34555666666666666666666555543

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=92.46  E-value=1.4  Score=43.19  Aligned_cols=104  Identities=18%  Similarity=0.093  Sum_probs=78.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      -+...|...-.+++++.|+...+-..-+..|. ..|+..++-.+++.+.+..|. |.++..|-  ..+ .|  |.++.-+
T Consensus       243 adp~~Ar~~A~~a~KL~pdlvPaav~AAralf-~d~~~rKg~~ilE~aWK~ePH-P~ia~lY~--~ar-~g--dta~dRl  315 (531)
T COG3898         243 ADPASARDDALEANKLAPDLVPAAVVAARALF-RDGNLRKGSKILETAWKAEPH-PDIALLYV--RAR-SG--DTALDRL  315 (531)
T ss_pred             CChHHHHHHHHHHhhcCCccchHHHHHHHHHH-hccchhhhhhHHHHHHhcCCC-hHHHHHHH--Hhc-CC--CcHHHHH
Confidence            35778888999999999999988877787776 479999999999999999995 55554443  222 34  3344444


Q ss_pred             H---HHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536          214 D---RAVHSAPDDCHVLASYARFLWDAGEEEDDD  244 (266)
Q Consensus       214 e---kAL~l~P~da~a~~~lA~ll~~~G~~~eA~  244 (266)
                      +   +...+.||+.+.....+..-+..|++..|.
T Consensus       316 kRa~~L~slk~nnaes~~~va~aAlda~e~~~AR  349 (531)
T COG3898         316 KRAKKLESLKPNNAESSLAVAEAALDAGEFSAAR  349 (531)
T ss_pred             HHHHHHHhcCccchHHHHHHHHHHHhccchHHHH
Confidence            4   445667899998888888888888887665

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=92.13  E-value=3.1  Score=34.55  Aligned_cols=84  Identities=14%  Similarity=0.052  Sum_probs=55.3

Q ss_pred             CCHHHHHHHHHHHHHHCCC------------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCCHHHH--
Q 024536          134 KESESMDVYYQEMIKAYPE------------DALVLANYAKFLKEIRGDFVKAEEYCGRAIL-------AKPGDGNVL--  192 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~------------~~~al~nlA~~L~~~~gd~e~A~~~~erAL~-------ldP~da~al--  192 (266)
                      +.|++|.+-|++|+++.-.            ++..|..|+..+. ..|+|++++...++||.       ++-+....|  
T Consensus        23 g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~-~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIa  101 (144)
T PF12968_consen   23 GAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALA-GLGRYDECLQSADRALRYFNRRGELHQDEGKLWIA  101 (144)
T ss_dssp             T-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHhhccccccccchhHHH
Confidence            5689999999999988533            2345556666664 47888777666666664       555555443  


Q ss_pred             --HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024536          193 --SMYGDLIWINHKDAPRAKSYFDRAVHS  219 (266)
Q Consensus       193 --~nla~ll~~~~gd~deAi~~~ekAL~l  219 (266)
                        ++.+..+.. .|+.++|+..|++|.+.
T Consensus       102 aVfsra~Al~~-~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen  102 AVFSRAVALEG-LGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh-cCChHHHHHHHHHHHHH
Confidence              344555533 78999999999988764

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=91.89  E-value=0.2  Score=47.68  Aligned_cols=63  Identities=8%  Similarity=0.010  Sum_probs=53.5

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 024536          135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGD  197 (266)
Q Consensus       135 ~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~  197 (266)
                      -+.+--..|.+++..+|.|+++|...+.+-+...++++.|.++|.++|+.+|++|..|+.|-.
T Consensus       122 ~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr  184 (435)
T COG5191         122 MYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFR  184 (435)
T ss_pred             HHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHH
Confidence            556666788999999999999998866655556799999999999999999999999987654

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=91.35  E-value=2.4  Score=38.74  Aligned_cols=68  Identities=13%  Similarity=0.023  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC----------------CHHHHHHHH
Q 024536          155 LVLANYAKFLKEI-----RGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHK----------------DAPRAKSYF  213 (266)
Q Consensus       155 ~al~nlA~~L~~~-----~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~g----------------d~deAi~~~  213 (266)
                      .++..+|.+....     .+..+++..+|++|+.++|....+|+.+|.++...-.                -...|+.+|
T Consensus       253 ~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y  332 (352)
T PF02259_consen  253 KAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGY  332 (352)
T ss_pred             HHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHH
Confidence            4555566655432     2788999999999999999999999999977644311                124589999


Q ss_pred             HHHHHhCCC
Q 024536          214 DRAVHSAPD  222 (266)
Q Consensus       214 ekAL~l~P~  222 (266)
                      -+|+.+.+.
T Consensus       333 ~~al~~~~~  341 (352)
T PF02259_consen  333 LKALSLGSK  341 (352)
T ss_pred             HHHHhhCCC
Confidence            999999988

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=91.11  E-value=0.77  Score=29.50  Aligned_cols=33  Identities=6%  Similarity=-0.048  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCCC
Q 024536          190 NVLSMYGDLIWINHKDAPRAKSY--FDRAVHSAPDD  223 (266)
Q Consensus       190 ~al~nla~ll~~~~gd~deAi~~--~ekAL~l~P~d  223 (266)
                      +.++.+|..++. +|++++|+.+  |+-+..++|.|
T Consensus         2 e~~y~~a~~~y~-~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQ-KGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHhcccC
Confidence            345566666554 6777777777  44777766654

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=91.07  E-value=2  Score=43.48  Aligned_cols=112  Identities=18%  Similarity=0.244  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 024536          136 SESMDVYYQEMIKAYPEDA-LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFD  214 (266)
Q Consensus       136 ~eeA~~~y~rALel~P~~~-~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~e  214 (266)
                      +++--.+|++++.+.-.++ .+|.+|-.+.....| ++.|...|.+|-+..-.-..++...|.+-+...+|.+-|...|+
T Consensus       347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eG-lkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFe  425 (656)
T KOG1914|consen  347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEG-LKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFE  425 (656)
T ss_pred             hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhh-HHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHH
Confidence            4555556777766654444 355555555443333 67788888888776544445555555444555788888888888


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCccccccccc
Q 024536          215 RAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDD  248 (266)
Q Consensus       215 kAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~  248 (266)
                      -.++.-+|.+.....|..+|...++...|...+|
T Consensus       426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFE  459 (656)
T KOG1914|consen  426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFE  459 (656)
T ss_pred             HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHH
Confidence            8888888888888888888888888777765544

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=90.75  E-value=0.31  Score=28.61  Aligned_cols=23  Identities=9%  Similarity=0.079  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHH
Q 024536          191 VLSMYGDLIWINHKDAPRAKSYFD  214 (266)
Q Consensus       191 al~nla~ll~~~~gd~deAi~~~e  214 (266)
                      ++.++|.+++. .||+++|+..++
T Consensus         3 a~~~la~~~~~-~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLA-QGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHH-cCCHHHHHHHHh
Confidence            44555555554 566666665554

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=90.67  E-value=1.2  Score=39.56  Aligned_cols=71  Identities=14%  Similarity=0.051  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHcCCHHHHH
Q 024536          137 ESMDVYYQEMIKA-YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG----DGNVLSMYGDLIWINHKDAPRAK  210 (266)
Q Consensus       137 eeA~~~y~rALel-~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~----da~al~nla~ll~~~~gd~deAi  210 (266)
                      ++|..-|-++-.. .=+++.+.+.+|.++  ...|.++|..++-+||++.+.    |++++..++.+++. +++++.|=
T Consensus       123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY--~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~-~~~~e~AY  198 (203)
T PF11207_consen  123 QEALRRFLQLEGTPELETAELQYALATYY--TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK-LKNYEQAY  198 (203)
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHH--HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH-hcchhhhh
Confidence            4454444333221 125788899999876  378999999999999998654    48999999998876 78888773

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=90.62  E-value=3.8  Score=40.88  Aligned_cols=46  Identities=17%  Similarity=0.280  Sum_probs=25.6

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024536          168 RGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDR  215 (266)
Q Consensus       168 ~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ek  215 (266)
                      +|+|.++.-|..-..+++| .+.++..+|.+++. .++|++|-.++..
T Consensus       475 qgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e-~k~Y~eA~~~l~~  520 (549)
T PF07079_consen  475 QGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLME-NKRYQEAWEYLQK  520 (549)
T ss_pred             cccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHH-HhhHHHHHHHHHh
Confidence            4555555555555555555 55555555555554 4455555555543

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=90.51  E-value=6.4  Score=40.12  Aligned_cols=105  Identities=16%  Similarity=0.107  Sum_probs=78.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----C-CHHHHHHHHHHHHHHcCCHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKP-----G-DGNVLSMYGDLIWINHKDAP  207 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP-----~-da~al~nla~ll~~~~gd~d  207 (266)
                      ++++.|..+|++..+.-|+...+-.....+.+ .++..+.+..+.+-.....+     . ....+..++.+.+...++.+
T Consensus       380 ~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~-r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~  458 (577)
T KOG1258|consen  380 GNFDDAKVILQRIESEYPGLVEVVLRKINWER-RKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDAD  458 (577)
T ss_pred             ccHHHHHHHHHHHHhhCCchhhhHHHHHhHHH-HhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHH
Confidence            68899999999999988988887777666665 46777777742222222222     1 13445667778888889999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 024536          208 RAKSYFDRAVHSAPDDCHVLASYARFLWDAGE  239 (266)
Q Consensus       208 eAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~  239 (266)
                      .|...+.+|+...|++...+..+-.+...+.-
T Consensus       459 ~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~  490 (577)
T KOG1258|consen  459 LARIILLEANDILPDCKVLYLELIRFELIQPS  490 (577)
T ss_pred             HHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence            99999999999999999988888887777663

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=90.37  E-value=0.54  Score=47.11  Aligned_cols=107  Identities=11%  Similarity=0.056  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHHcCCHHHH
Q 024536          139 MDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRA-ILAKPG--------DGNVLSMYGDLIWINHKDAPRA  209 (266)
Q Consensus       139 A~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erA-L~ldP~--------da~al~nla~ll~~~~gd~deA  209 (266)
                      +..-.+.++.+.-+.+.++..-+.+.| .+|++.+|.+.+... |...|.        ..-+|+|+|.+.++ .+.|..+
T Consensus       225 ~krevK~vmn~a~~s~~~l~LKsq~eY-~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~-~~~y~~~  302 (696)
T KOG2471|consen  225 AKREVKHVMNIAQDSSMALLLKSQLEY-AHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQ-LGCYQAS  302 (696)
T ss_pred             HHHhhhhhhhhcCCCcHHHHHHHHHHH-HhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeee-hhhHHHH
Confidence            333344455556677777777777776 589999998876542 333444        23456789988887 6889999


Q ss_pred             HHHHHHHHH---------hCC---------CCHHHHHHHHHHHHHcCCcccccccc
Q 024536          210 KSYFDRAVH---------SAP---------DDCHVLASYARFLWDAGEEEDDDDGD  247 (266)
Q Consensus       210 i~~~ekAL~---------l~P---------~da~a~~~lA~ll~~~G~~~eA~~~~  247 (266)
                      ..+|++|++         +.|         ...+++++.|..|+..|++-.|-|-.
T Consensus       303 ~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf  358 (696)
T KOG2471|consen  303 SVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCF  358 (696)
T ss_pred             HHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHH
Confidence            999999996         122         24568999999999999999887643

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=90.22  E-value=5.4  Score=36.42  Aligned_cols=111  Identities=14%  Similarity=0.083  Sum_probs=73.5

Q ss_pred             CCHHHHHHHHHHHHHHC-CCCH-------HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh----CC---CCH-------H
Q 024536          134 KESESMDVYYQEMIKAY-PEDA-------LVLANYAKFLKEIRG-DFVKAEEYCGRAILA----KP---GDG-------N  190 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~-P~~~-------~al~nlA~~L~~~~g-d~e~A~~~~erAL~l----dP---~da-------~  190 (266)
                      ++++.|+.+|.|+-... ..+|       ..++|.|.-++ ..+ +++.|..++++|+++    ..   ..+       .
T Consensus         7 ~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~-~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~   85 (278)
T PF08631_consen    7 GDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLL-SKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLS   85 (278)
T ss_pred             CCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHH
Confidence            68899999999997665 3343       45566666555 467 999999999999998    32   222       3


Q ss_pred             HHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccc
Q 024536          191 VLSMYGDLIWIN--HKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDD  245 (266)
Q Consensus       191 al~nla~ll~~~--~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~  245 (266)
                      ++..++.++...  ....++|+.+.+.+-.--|+.+.++.-.-.++...++.+++.+
T Consensus        86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~  142 (278)
T PF08631_consen   86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEE  142 (278)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHH
Confidence            455566666441  1235667777777777778888776544455555555555554

It is also involved in sporulation [].

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=90.01  E-value=3.1  Score=38.82  Aligned_cols=90  Identities=14%  Similarity=0.190  Sum_probs=74.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      .+|.++..+|+..+..+                  ..-.+|+++-+.+|.++|.+-.+|...-.++..+..+..+-+.++
T Consensus        40 e~fr~~m~YfRAI~~~~------------------E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l  101 (318)
T KOG0530|consen   40 EDFRDVMDYFRAIIAKN------------------EKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYL  101 (318)
T ss_pred             hhHHHHHHHHHHHHhcc------------------ccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHH
Confidence            57777777777665533                  334778888899999999999999887778878788999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCcc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEE  241 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~  241 (266)
                      ...++-+|.|-++|+.--.+.-..|+..
T Consensus       102 ~eI~e~npKNYQvWHHRr~ive~l~d~s  129 (318)
T KOG0530|consen  102 DEIIEDNPKNYQVWHHRRVIVELLGDPS  129 (318)
T ss_pred             HHHHHhCccchhHHHHHHHHHHHhcCcc
Confidence            9999999999999988877777777655

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=89.82  E-value=2.3  Score=34.33  Aligned_cols=78  Identities=24%  Similarity=0.243  Sum_probs=56.5

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHcC----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 024536          167 IRGDFVKAEEYCGRAILAKPGDGN---VLSMYGDLIWINHK----------DAPRAKSYFDRAVHSAPDDCHVLASYARF  233 (266)
Q Consensus       167 ~~gd~e~A~~~~erAL~ldP~da~---al~nla~ll~~~~g----------d~deAi~~~ekAL~l~P~da~a~~~lA~l  233 (266)
                      .+|++-+|++..+..+...+++..   .+..-|.+++.+..          -+-.|+++|.+++.+.|+.+..++.+|.=
T Consensus         8 ~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la~~   87 (111)
T PF04781_consen    8 ARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELASQ   87 (111)
T ss_pred             HccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHHHH
Confidence            479999999999999999998874   44444555533221          14568999999999999998888888865


Q ss_pred             HHHcCCccccc
Q 024536          234 LWDAGEEEDDD  244 (266)
Q Consensus       234 l~~~G~~~eA~  244 (266)
                      +--.--++++.
T Consensus        88 l~s~~~Ykk~v   98 (111)
T PF04781_consen   88 LGSVKYYKKAV   98 (111)
T ss_pred             hhhHHHHHHHH
Confidence            43333444444

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=89.74  E-value=2.7  Score=36.10  Aligned_cols=92  Identities=13%  Similarity=0.024  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHH----
Q 024536          155 LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG---NVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPD--DCH----  225 (266)
Q Consensus       155 ~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da---~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~--da~----  225 (266)
                      .++..+|.++. ..||+++|.++|.++...--...   +.+.++-.+... .+|+..+..+..+|-.+--.  +..    
T Consensus        37 ~~~~~l~~~~~-~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~-~~d~~~v~~~i~ka~~~~~~~~d~~~~nr  114 (177)
T PF10602_consen   37 MALEDLADHYC-KIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIF-FGDWSHVEKYIEKAESLIEKGGDWERRNR  114 (177)
T ss_pred             HHHHHHHHHHH-HhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence            67788999886 57999999999999888654433   334444444444 68999999999998776543  332    


Q ss_pred             HHHHHHHHHHHcCCccccccccc
Q 024536          226 VLASYARFLWDAGEEEDDDDGDD  248 (266)
Q Consensus       226 a~~~lA~ll~~~G~~~eA~~~~~  248 (266)
                      ....-|..+...+++.+|.+..-
T Consensus       115 lk~~~gL~~l~~r~f~~AA~~fl  137 (177)
T PF10602_consen  115 LKVYEGLANLAQRDFKEAAELFL  137 (177)
T ss_pred             HHHHHHHHHHHhchHHHHHHHHH
Confidence            24456777888899999997543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=89.67  E-value=2.1  Score=45.49  Aligned_cols=84  Identities=24%  Similarity=0.392  Sum_probs=62.9

Q ss_pred             CCHHHHHHHHHHH----------HHHCCC----------CHHHHHHHHHHHHHHcCCHHHHHHHHHHH------------
Q 024536          134 KESESMDVYYQEM----------IKAYPE----------DALVLANYAKFLKEIRGDFVKAEEYCGRA------------  181 (266)
Q Consensus       134 ~~~eeA~~~y~rA----------Lel~P~----------~~~al~nlA~~L~~~~gd~e~A~~~~erA------------  181 (266)
                      .+.+.|+++|+++          |.-+|.          ++.+|..+|.++ +..|+++.|+.+|..|            
T Consensus       872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYl-ES~GemdaAl~~Y~~A~D~fs~VrI~C~  950 (1416)
T KOG3617|consen  872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYL-ESVGEMDAALSFYSSAKDYFSMVRIKCI  950 (1416)
T ss_pred             ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHH-hcccchHHHHHHHHHhhhhhhheeeEee
Confidence            6789999999864          555664          445566667766 4689999999999765            


Q ss_pred             ---------HHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024536          182 ---------ILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHS  219 (266)
Q Consensus       182 ---------L~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l  219 (266)
                               |+....|-.+.+.+|..|.. .|++.+|+.+|-||-..
T Consensus       951 qGk~~kAa~iA~esgd~AAcYhlaR~YEn-~g~v~~Av~FfTrAqaf  996 (1416)
T KOG3617|consen  951 QGKTDKAARIAEESGDKAACYHLARMYEN-DGDVVKAVKFFTRAQAF  996 (1416)
T ss_pred             ccCchHHHHHHHhcccHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHH
Confidence                     33445677788899988755 89999999998887543

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=88.87  E-value=5.1  Score=35.76  Aligned_cols=100  Identities=15%  Similarity=0.016  Sum_probs=71.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH----cC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--
Q 024536          131 DSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEI----RG--DFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN--  202 (266)
Q Consensus       131 ~~~~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~----~g--d~e~A~~~~erAL~ldP~da~al~nla~ll~~~--  202 (266)
                      |.-.+...|+.+|..|..  -+.+.+-.+++.+++..    ..  +.++|++|+.||-.+  ++.++.++|...+...  
T Consensus        84 G~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl--~~~~aCf~LS~m~~~g~~  159 (248)
T KOG4014|consen   84 GDDASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDL--EDGEACFLLSTMYMGGKE  159 (248)
T ss_pred             CCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccC--CCchHHHHHHHHHhccch
Confidence            344688999999999887  56677788888765421    12  378999999999765  4566666666544321  


Q ss_pred             ---------------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024536          203 ---------------------HKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWD  236 (266)
Q Consensus       203 ---------------------~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~  236 (266)
                                           .+|.++|.++--+|-+++  ++++.+++.+.|..
T Consensus       160 k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMykl  212 (248)
T KOG4014|consen  160 KFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELD--IPQACANVSRMYKL  212 (248)
T ss_pred             hhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHc
Confidence                                 147889999999998885  56778888876543

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=88.79  E-value=1.3  Score=39.90  Aligned_cols=47  Identities=32%  Similarity=0.326  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHH-----CCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024536          137 ESMDVYYQEMIKA-----YPEDAL---VLANYAKFLKEIRGDFVKAEEYCGRAIL  183 (266)
Q Consensus       137 eeA~~~y~rALel-----~P~~~~---al~nlA~~L~~~~gd~e~A~~~~erAL~  183 (266)
                      ++|..+|++|+++     .|.+|.   +..|++.|+++..++.++|....++|+.
T Consensus       143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd  197 (236)
T PF00244_consen  143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD  197 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred             HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            4555555555442     455552   3345555555555555555555555543

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>smart00101 14_3_3 14-3-3 homologues

Probab=88.72  E-value=3.9  Score=37.27  Aligned_cols=49  Identities=10%  Similarity=-0.055  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHH-----hCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024536          171 FVKAEEYCGRAIL-----AKPGDGN---VLSMYGDLIWINHKDAPRAKSYFDRAVHS  219 (266)
Q Consensus       171 ~e~A~~~~erAL~-----ldP~da~---al~nla~ll~~~~gd~deAi~~~ekAL~l  219 (266)
                      .++|...|+.|+.     +.|.||-   ...|++++++...++.++|..+-++|+.-
T Consensus       144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~  200 (244)
T smart00101      144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE  200 (244)
T ss_pred             HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4689999999987     4588874   35678899999999999999777776654

14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=88.66  E-value=4.1  Score=41.37  Aligned_cols=121  Identities=12%  Similarity=0.051  Sum_probs=88.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      .....|...|.+|-+.--.--.++..-|.+-+...+|.+-|.+.|+-.|+.-++++....-|..++.. .++-.-|..+|
T Consensus       380 eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~-lNdd~N~R~LF  458 (656)
T KOG1914|consen  380 EGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSH-LNDDNNARALF  458 (656)
T ss_pred             hhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHH-hCcchhHHHHH
Confidence            45678888888887754433344444444434457999999999999999999999988888888877 57778899999


Q ss_pred             HHHHHh--CCCC-HHHHHHHHHHHHHcCCcccccccccccccCCC
Q 024536          214 DRAVHS--APDD-CHVLASYARFLWDAGEEEDDDDGDDQETCASQ  255 (266)
Q Consensus       214 ekAL~l--~P~d-a~a~~~lA~ll~~~G~~~eA~~~~~~~~~~~~  255 (266)
                      ++++..  .|+. .++|...-.+-...|+..-..+...+...++|
T Consensus       459 Er~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~  503 (656)
T KOG1914|consen  459 ERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP  503 (656)
T ss_pred             HHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence            999998  5543 35677766667777777766655444444444

>smart00101 14_3_3 14-3-3 homologues

Probab=88.23  E-value=1.8  Score=39.49  Aligned_cols=49  Identities=20%  Similarity=0.221  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHHH-----CCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024536          136 SESMDVYYQEMIKA-----YPEDAL---VLANYAKFLKEIRGDFVKAEEYCGRAILA  184 (266)
Q Consensus       136 ~eeA~~~y~rALel-----~P~~~~---al~nlA~~L~~~~gd~e~A~~~~erAL~l  184 (266)
                      .++|...|+.|+++     .|.||.   +..|++.|+++..++.++|....++|+..
T Consensus       144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~  200 (244)
T smart00101      144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE  200 (244)
T ss_pred             HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            57899999999874     588884   55889999999999999999888888763

14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=88.03  E-value=6.2  Score=38.65  Aligned_cols=104  Identities=14%  Similarity=0.090  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-----------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 024536          136 SESMDVYYQEMIKAYPEDALVLANYAKFLKEI-----------RGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHK  204 (266)
Q Consensus       136 ~eeA~~~y~rALel~P~~~~al~nlA~~L~~~-----------~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~g  204 (266)
                      .++++++=.+.++.+|+...+|+.--.++...           ..-+++-+.+.+.+|..+|++-.+|+...+++...--
T Consensus        45 d~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~  124 (421)
T KOG0529|consen   45 DEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPH  124 (421)
T ss_pred             chHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCC
Confidence            36788888999999999999987754433221           1234667788999999999999999999998864222


Q ss_pred             -CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 024536          205 -DAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGE  239 (266)
Q Consensus       205 -d~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~  239 (266)
                       ++..-+++++++++.||.+-.+|..-=.+.-.+..
T Consensus       125 ~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~  160 (421)
T KOG0529|consen  125 SDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAER  160 (421)
T ss_pred             chHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhc
Confidence             37889999999999999998887655544444433

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=87.06  E-value=6.8  Score=29.81  Aligned_cols=53  Identities=15%  Similarity=0.055  Sum_probs=38.4

Q ss_pred             CCHHHHHHHHHHHHHHCC----CC-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 024536          134 KESESMDVYYQEMIKAYP----ED-----ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG  187 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P----~~-----~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~  187 (266)
                      +++.+|.+.+.+......    ..     ..++.++|.+.. ..|++++|...+++||++...
T Consensus        12 ~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~-~~G~~~~A~~~l~eAi~~Are   73 (94)
T PF12862_consen   12 GDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHR-RFGHYEEALQALEEAIRLARE   73 (94)
T ss_pred             CCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHH
Confidence            577888666666655533    22     456777887655 579999999999999998643

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=86.61  E-value=4.1  Score=33.82  Aligned_cols=89  Identities=16%  Similarity=0.085  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHHcCCHHHHHHHHHHH------
Q 024536          156 VLANYAKFLKE-IRGDFVKAEEYCGRAILAKPG------------DGNVLSMYGDLIWINHKDAPRAKSYFDRA------  216 (266)
Q Consensus       156 al~nlA~~L~~-~~gd~e~A~~~~erAL~ldP~------------da~al~nla~ll~~~~gd~deAi~~~ekA------  216 (266)
                      +|..|+..-.+ ..+.|++|..-|++|......            |+.+|..|+.++.. .|+|++++..-++|      
T Consensus         9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~-Lgry~e~L~sA~~aL~YFNR   87 (144)
T PF12968_consen    9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAG-LGRYDECLQSADRALRYFNR   87 (144)
T ss_dssp             HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHhh
Confidence            44444443221 348899999999999986432            34566677777776 68887765555444      


Q ss_pred             -HHhCCCCHH----HHHHHHHHHHHcCCcccccc
Q 024536          217 -VHSAPDDCH----VLASYARFLWDAGEEEDDDD  245 (266)
Q Consensus       217 -L~l~P~da~----a~~~lA~ll~~~G~~~eA~~  245 (266)
                       =+++-+...    +.++-|.++-..|+.++|..
T Consensus        88 RGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~  121 (144)
T PF12968_consen   88 RGELHQDEGKLWIAAVFSRAVALEGLGRKEEALK  121 (144)
T ss_dssp             H--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             ccccccccchhHHHHHHHHHHHHHhcCChHHHHH
Confidence             456665443    56788899999999999984

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=85.57  E-value=3  Score=26.73  Aligned_cols=33  Identities=12%  Similarity=0.024  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCCC
Q 024536          155 LVLANYAKFLKEIRGDFVKAEEY--CGRAILAKPGD  188 (266)
Q Consensus       155 ~al~nlA~~L~~~~gd~e~A~~~--~erAL~ldP~d  188 (266)
                      +.++.+|..++ .+|++++|+.+  |+-+..++|.|
T Consensus         2 e~~y~~a~~~y-~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFY-QKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHhcccC
Confidence            45677787776 58999999999  55888888765

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=85.22  E-value=5.7  Score=37.01  Aligned_cols=80  Identities=13%  Similarity=0.006  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024536          136 SESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDR  215 (266)
Q Consensus       136 ~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ek  215 (266)
                      +..=....+++++.  ....++..++..+. ..++++.+...+++-+..+|.+-.+|..+-.+++. .|+..+|+..|++
T Consensus       137 f~~WV~~~R~~l~e--~~~~~l~~lae~~~-~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~-~g~~~~ai~~y~~  212 (280)
T COG3629         137 FDEWVLEQRRALEE--LFIKALTKLAEALI-ACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLV-NGRQSAAIRAYRQ  212 (280)
T ss_pred             HHHHHHHHHHHHHH--HHHHHHHHHHHHHH-hcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-cCCchHHHHHHHH
Confidence            55555555555553  23456666666554 57899999999999999999999988877777765 8999999999998


Q ss_pred             HHHh
Q 024536          216 AVHS  219 (266)
Q Consensus       216 AL~l  219 (266)
                      .-.+
T Consensus       213 l~~~  216 (280)
T COG3629         213 LKKT  216 (280)
T ss_pred             HHHH
Confidence            8773

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.19  E-value=10  Score=33.79  Aligned_cols=75  Identities=15%  Similarity=0.105  Sum_probs=54.5

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536          168 RGDFVKAEEYCGRAILAKPGDG---NVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDD  244 (266)
Q Consensus       168 ~gd~e~A~~~~erAL~ldP~da---~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~  244 (266)
                      .+++++|+..++.++...-|.-   -+-.++|.++.+ ++.+|+|+..++....-+= .+.+...-|.++...|+.++|.
T Consensus       102 ~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q-~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~kg~k~~Ar  179 (207)
T COG2976         102 ANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQ-QKKADAALKTLDTIKEESW-AAIVAELRGDILLAKGDKQEAR  179 (207)
T ss_pred             hccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHH-hhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHcCchHHHH
Confidence            6899999999999987654432   344567888877 7889999998876543211 1233456788999999999888

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=85.05  E-value=5.2  Score=36.50  Aligned_cols=77  Identities=19%  Similarity=0.114  Sum_probs=57.2

Q ss_pred             HcCCHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh----CCC---C-------
Q 024536          167 IRGDFVKAEEYCGRAILAK-PGDG-------NVLSMYGDLIWINHK-DAPRAKSYFDRAVHS----APD---D-------  223 (266)
Q Consensus       167 ~~gd~e~A~~~~erAL~ld-P~da-------~al~nla~ll~~~~g-d~deAi~~~ekAL~l----~P~---d-------  223 (266)
                      .+||++.|+.+|.|+-... .-+|       ..++++|.-++. ++ +++.|..++++|.++    .+.   .       
T Consensus         5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~-~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr   83 (278)
T PF08631_consen    5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLS-KKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR   83 (278)
T ss_pred             hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHH-cCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence            4699999999999998765 3343       456666666655 67 999999999999999    321   1       


Q ss_pred             HHHHHHHHHHHHHcCCccccc
Q 024536          224 CHVLASYARFLWDAGEEEDDD  244 (266)
Q Consensus       224 a~a~~~lA~ll~~~G~~~eA~  244 (266)
                      ..++..++.++.+.+.++..+
T Consensus        84 ~~iL~~La~~~l~~~~~~~~~  104 (278)
T PF08631_consen   84 LSILRLLANAYLEWDTYESVE  104 (278)
T ss_pred             HHHHHHHHHHHHcCCChHHHH
Confidence            125778899998888776554

It is also involved in sporulation [].

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=84.98  E-value=5.9  Score=33.91  Aligned_cols=51  Identities=25%  Similarity=0.369  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 024536          171 FVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (266)
Q Consensus       171 ~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~d  223 (266)
                      .+..++..++.++..| ++.++.+++.++.. .|+.++|..+.+++..+-|.+
T Consensus       127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~-~G~~~eA~~~~~~~~~lyP~~  177 (193)
T PF11846_consen  127 LEAYIEWAERLLRRRP-DPNVYQRYALALAL-LGDPEEARQWLARARRLYPAD  177 (193)
T ss_pred             HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCcH
Confidence            4566677888888889 58888899988765 899999999999999999944

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=84.92  E-value=1.2  Score=26.03  Aligned_cols=25  Identities=28%  Similarity=0.189  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024536          155 LVLANYAKFLKEIRGDFVKAEEYCGR  180 (266)
Q Consensus       155 ~al~nlA~~L~~~~gd~e~A~~~~er  180 (266)
                      .++.++|.++. ..|++++|+..+++
T Consensus         2 ~a~~~la~~~~-~~G~~~eA~~~l~~   26 (26)
T PF07721_consen    2 RARLALARALL-AQGDPDEAERLLRR   26 (26)
T ss_pred             HHHHHHHHHHH-HcCCHHHHHHHHhC
Confidence            46788998886 58999999998864

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=84.90  E-value=3.4  Score=37.26  Aligned_cols=49  Identities=18%  Similarity=0.085  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHH-----hCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024536          171 FVKAEEYCGRAIL-----AKPGDGN---VLSMYGDLIWINHKDAPRAKSYFDRAVHS  219 (266)
Q Consensus       171 ~e~A~~~~erAL~-----ldP~da~---al~nla~ll~~~~gd~deAi~~~ekAL~l  219 (266)
                      .++|..+|++|+.     +.|.||-   ...|++++++...++.++|+.+.++|+..
T Consensus       142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~  198 (236)
T PF00244_consen  142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE  198 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            3788889999887     5788884   45678999999899999999998888764

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=84.78  E-value=4.7  Score=34.01  Aligned_cols=62  Identities=18%  Similarity=0.202  Sum_probs=49.2

Q ss_pred             CCCCCHHHHHHHHHHHHH-HCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 024536          131 DSGKESESMDVYYQEMIK-AYPEDA-LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLS  193 (266)
Q Consensus       131 ~~~~~~eeA~~~y~rALe-l~P~~~-~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~  193 (266)
                      .+..+..+.+.++...++ .+|..- +.++.+|.-.+ ..++|+++..|.+..|+..|+|.++..
T Consensus        46 ~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~y-RlkeY~~s~~yvd~ll~~e~~n~Qa~~  109 (149)
T KOG3364|consen   46 RDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHY-RLKEYSKSLRYVDALLETEPNNRQALE  109 (149)
T ss_pred             cchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHH-HHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence            455788899999999997 666544 45566665555 469999999999999999999998764

>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing

Probab=84.18  E-value=2.1  Score=27.05  Aligned_cols=28  Identities=29%  Similarity=0.450  Sum_probs=18.7

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q 024536          135 ESESMDVYYQEMIKAYPEDALVLANYAKF  163 (266)
Q Consensus       135 ~~eeA~~~y~rALel~P~~~~al~nlA~~  163 (266)
                      +++.|...|++.+...|+ +..|..||.+
T Consensus         2 E~dRAR~IyeR~v~~hp~-~k~WikyAkF   29 (32)
T PF02184_consen    2 EFDRARSIYERFVLVHPE-VKNWIKYAKF   29 (32)
T ss_pred             hHHHHHHHHHHHHHhCCC-chHHHHHHHh
Confidence            567777777777777755 5666666653

They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.59  E-value=16  Score=36.86  Aligned_cols=109  Identities=20%  Similarity=0.219  Sum_probs=76.2

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHH
Q 024536          132 SGKESESMDVYYQEMIKAYPED---ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD----------GNVLSMYGDL  198 (266)
Q Consensus       132 ~~~~~eeA~~~y~rALel~P~~---~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d----------a~al~nla~l  198 (266)
                      +.+.++.|+..|..|++.--.-   +.+..|+|..|. ..+   +++.+|+-.=.+.|.|          +.+++.+|.+
T Consensus       379 sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL-~~~---~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glf  454 (629)
T KOG2300|consen  379 SVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYL-RIG---DAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLF  454 (629)
T ss_pred             hcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHH-Hhc---cHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHH
Confidence            3478999999999999875443   344566777664 334   5566666666677774          3567778877


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCC-C-----HHHHHHHHHHHHHcCCcccccc
Q 024536          199 IWINHKDAPRAKSYFDRAVHSAPD-D-----CHVLASYARFLWDAGEEEDDDD  245 (266)
Q Consensus       199 l~~~~gd~deAi~~~ekAL~l~P~-d-----a~a~~~lA~ll~~~G~~~eA~~  245 (266)
                      .+. ++++.||...+.+.++.... |     +..+.-++.+..-.|+..++.+
T Consensus       455 af~-qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~n  506 (629)
T KOG2300|consen  455 AFK-QNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRN  506 (629)
T ss_pred             HHH-hccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHh
Confidence            766 89999999999999998721 1     1134556777777777777664

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=83.36  E-value=24  Score=32.30  Aligned_cols=88  Identities=18%  Similarity=0.037  Sum_probs=62.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHH--------
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNV---LSMYGDLIWIN--------  202 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~a---l~nla~ll~~~--------  202 (266)
                      ....+|+...+.-++.+|.++....-|=.+|. +.|++++|...++-+-.+.|++..-   |.++-.+-...        
T Consensus        15 ~sL~dai~~a~~qVkakPtda~~RhflfqLlc-vaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ea~R~evfag~~   93 (273)
T COG4455          15 NSLQDAIGLARDQVKAKPTDAGGRHFLFQLLC-VAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCEAARNEVFAGGA   93 (273)
T ss_pred             ccHHHHHHHHHHHHhcCCccccchhHHHHHHh-hcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHhccCC
Confidence            46789999999999999999977666666665 6899999999999999999997643   33322211100        


Q ss_pred             -----cCCHHHHHHHHHHHHHhCCC
Q 024536          203 -----HKDAPRAKSYFDRAVHSAPD  222 (266)
Q Consensus       203 -----~gd~deAi~~~ekAL~l~P~  222 (266)
                           .|...+=+..+.+|+.+.-+
T Consensus        94 ~Pgflg~p~p~wva~L~aala~h~d  118 (273)
T COG4455          94 VPGFLGGPSPEWVAALLAALALHSD  118 (273)
T ss_pred             CCCCcCCCCHHHHHHHHHHHhcccC
Confidence                 12455556666666666655

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=82.17  E-value=6.7  Score=42.35  Aligned_cols=90  Identities=12%  Similarity=0.029  Sum_probs=70.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHH---cC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 024536          134 KESESMDVYYQEMIKAYPEDA---LVLANYAKFLKEI---RG---DFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHK  204 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~---~al~nlA~~L~~~---~g---d~e~A~~~~erAL~ldP~da~al~nla~ll~~~~g  204 (266)
                      +.|++|+..|+|.-.-.|+-.   ++.+..|..+.+.   .+   ++++|+.-|++. .-.|.-|--|..-|.+|.. .+
T Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~  566 (932)
T PRK13184        489 KLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGKALVYQR-LG  566 (932)
T ss_pred             HHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhHHHHHHH-hh
Confidence            789999999999999999876   6778888766542   12   467777777764 3456666667677777754 79


Q ss_pred             CHHHHHHHHHHHHHhCCCCHH
Q 024536          205 DAPRAKSYFDRAVHSAPDDCH  225 (266)
Q Consensus       205 d~deAi~~~ekAL~l~P~da~  225 (266)
                      ++++-+++|.-|++.=|+.|.
T Consensus       567 ~~~~~~~~~~~~~~~~~~~~~  587 (932)
T PRK13184        567 EYNEEIKSLLLALKRYSQHPE  587 (932)
T ss_pred             hHHHHHHHHHHHHHhcCCCCc
Confidence            999999999999999999875

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=81.92  E-value=11  Score=36.18  Aligned_cols=89  Identities=8%  Similarity=0.020  Sum_probs=60.4

Q ss_pred             CCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C----CHHHHHHHHHHHHHHcCCH
Q 024536          133 GKESESMDVYYQEMIKAYPE-DALVLANYAKFLKEIRGDFVKAEEYCGRAILAKP-G----DGNVLSMYGDLIWINHKDA  206 (266)
Q Consensus       133 ~~~~eeA~~~y~rALel~P~-~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP-~----da~al~nla~ll~~~~gd~  206 (266)
                      +|.+..|.++++-.+.+||. ||.....+=+++....++++--+.+++....... +    -|...+..+.+++. .++.
T Consensus       116 RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~-l~~~  194 (360)
T PF04910_consen  116 RGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFR-LEKE  194 (360)
T ss_pred             cCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHH-hcCc
Confidence            37899999999999999999 8875555444444345777766666666544211 1    12344455555655 3444


Q ss_pred             ---------------HHHHHHHHHHHHhCCC
Q 024536          207 ---------------PRAKSYFDRAVHSAPD  222 (266)
Q Consensus       207 ---------------deAi~~~ekAL~l~P~  222 (266)
                                     ++|...+++|+..-|.
T Consensus       195 ~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~  225 (360)
T PF04910_consen  195 ESSQSSAQSGRSENSESADEALQKAILRFPW  225 (360)
T ss_pred             cccccccccccccchhHHHHHHHHHHHHhHH
Confidence                           8999999999999664

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.76  E-value=11  Score=39.20  Aligned_cols=90  Identities=9%  Similarity=0.028  Sum_probs=66.0

Q ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 024536          152 EDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG------NVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCH  225 (266)
Q Consensus       152 ~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da------~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~  225 (266)
                      -+..+|+.-+..+.  ..+|..+.++|+..+..-|.|-      ....+++.+|... .+.|+|.++++.|=+.+|.++-
T Consensus       353 iH~iLWn~A~~~F~--~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L-~QLD~A~E~~~EAE~~d~~~~l  429 (872)
T KOG4814|consen  353 IHTLLWNTAKKLFK--MEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKL-EQLDNAVEVYQEAEEVDRQSPL  429 (872)
T ss_pred             HHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHhhccccHH
Confidence            35666776666553  5779999999999988777653      4566788777764 5789999999999999988876


Q ss_pred             HHHHHHHHHHHcCCccccc
Q 024536          226 VLASYARFLWDAGEEEDDD  244 (266)
Q Consensus       226 a~~~lA~ll~~~G~~~eA~  244 (266)
                      -....-.....-+.-++|.
T Consensus       430 ~q~~~~~~~~~E~~Se~AL  448 (872)
T KOG4814|consen  430 CQLLMLQSFLAEDKSEEAL  448 (872)
T ss_pred             HHHHHHHHHHHhcchHHHH
Confidence            6555555556666666666

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.65  E-value=6.9  Score=40.61  Aligned_cols=85  Identities=9%  Similarity=-0.029  Sum_probs=61.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024536          134 KESESMDVYYQEMIKAYPEDA------LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAP  207 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~------~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~d  207 (266)
                      ++|..+++.|...+..-|.+-      ....+++.++. ...++++|.++++.|-+.+|.++......-.+... .+.-+
T Consensus       368 ~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL-~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~-E~~Se  445 (872)
T KOG4814|consen  368 EKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYL-KLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLA-EDKSE  445 (872)
T ss_pred             HHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH-hcchH
Confidence            788889999999998888663      45566665554 45678999999999999999888665444333333 57788


Q ss_pred             HHHHHHHHHHHhC
Q 024536          208 RAKSYFDRAVHSA  220 (266)
Q Consensus       208 eAi~~~ekAL~l~  220 (266)
                      +|+.+..+.....
T Consensus       446 ~AL~~~~~~~s~~  458 (872)
T KOG4814|consen  446 EALTCLQKIKSSE  458 (872)
T ss_pred             HHHHHHHHHHhhh
Confidence            8888877766543

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=81.47  E-value=15  Score=39.24  Aligned_cols=109  Identities=17%  Similarity=0.143  Sum_probs=74.0

Q ss_pred             CCHHHHHHHHHHHHHHCCC-----CHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPE-----DAL----VLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN-----VLSMYGDLI  199 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~-----~~~----al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~-----al~nla~ll  199 (266)
                      .++.+|..+..++...-|.     ...    +..-.|.+.. ..+++++|+++.+.|+..=|.+..     ++...+.+.
T Consensus       429 ~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val-~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~  507 (894)
T COG2909         429 HRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVAL-NRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAA  507 (894)
T ss_pred             cChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHH
Confidence            7888888888888776655     111    1111233332 479999999999999998887653     455566655


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCC----CCHHH--HHHHHHHHHHcCCccccc
Q 024536          200 WINHKDAPRAKSYFDRAVHSAP----DDCHV--LASYARFLWDAGEEEDDD  244 (266)
Q Consensus       200 ~~~~gd~deAi~~~ekAL~l~P----~da~a--~~~lA~ll~~~G~~~eA~  244 (266)
                       ..+|++++|..+.+++.+++-    -.-.+  ...-+.++..+|+..-|+
T Consensus       508 -~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~  557 (894)
T COG2909         508 -HIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAE  557 (894)
T ss_pred             -HHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence             348999999999999999843    22223  334467778888544444

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=80.96  E-value=7.8  Score=34.60  Aligned_cols=97  Identities=14%  Similarity=0.121  Sum_probs=64.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc----C-
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEI----RGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINH----K-  204 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~----~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~----g-  204 (266)
                      +++++|.+.|+.-..- -.++..-+.||.....-    .+++..|.++|+.|-.  -+++.+..+++.++|...    . 
T Consensus        49 knF~~A~kv~K~nCde-n~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~d  125 (248)
T KOG4014|consen   49 KNFQAAVKVFKKNCDE-NSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKAD  125 (248)
T ss_pred             HHHHHHHHHHHhcccc-cCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccCC
Confidence            4555555555544442 23455666676543211    2468889999988765  677888888888777532    2 


Q ss_pred             -CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 024536          205 -DAPRAKSYFDRAVHSAPDDCHVLASYARFLW  235 (266)
Q Consensus       205 -d~deAi~~~ekAL~l~P~da~a~~~lA~ll~  235 (266)
                       |.++|++|+.||-++  ++..+.+.|...+.
T Consensus       126 pd~~Ka~~y~traCdl--~~~~aCf~LS~m~~  155 (248)
T KOG4014|consen  126 PDSEKAERYMTRACDL--EDGEACFLLSTMYM  155 (248)
T ss_pred             CCcHHHHHHHHHhccC--CCchHHHHHHHHHh
Confidence             278899999998754  88888888876443

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=80.42  E-value=1.6  Score=41.99  Aligned_cols=103  Identities=12%  Similarity=0.014  Sum_probs=75.5

Q ss_pred             CCHHHHHHHHHHHHHHCC-----------C-----C---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYP-----------E-----D---ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSM  194 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P-----------~-----~---~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~n  194 (266)
                      +++..|..-|+++++.--           +     .   -....|++.+.. ..+.+..|......+++.++....+++.
T Consensus       236 ~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~l-k~~~~~~a~~~~~~~~~~~~s~tka~~R  314 (372)
T KOG0546|consen  236 QRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGL-KVKGRGGARFRTNEALRDERSKTKAHYR  314 (372)
T ss_pred             ccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcc-cccCCCcceeccccccccChhhCcHHHH
Confidence            567777777777765421           1     0   123344554433 3467788888888888999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 024536          195 YGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAG  238 (266)
Q Consensus       195 la~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G  238 (266)
                      .+..+.. ..++++|++.++.|...+|++..+...+..+.....
T Consensus       315 r~~~~~~-~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~  357 (372)
T KOG0546|consen  315 RGQAYKL-LKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKK  357 (372)
T ss_pred             HHhHHHh-hhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHH
Confidence            9988765 678999999999999999999998776665544443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	266
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	2e-10
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	2e-05
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	1e-09
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	3e-08
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	8e-07
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	3e-07
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-06
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-06
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-06
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	3e-06
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	1e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-06
4g1t_A	472	Interferon-induced protein with tetratricopeptide	6e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	9e-04
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	6e-06
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-04
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	2e-05
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	3e-05
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	8e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	9e-05
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	5e-05
2kat_A	115	Uncharacterized protein; NESG, structure, structur	5e-05
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	7e-04
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	1e-04
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	4e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	8e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	9e-04

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308

 Score = 59.3 bits (143), Expect = 2e-10
 Identities = 17/110 (15%), Positives = 33/110 (30%), Gaps = 1/110 (0%)

Query: 132 SGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNV 191
             K  +   +Y + +     +  LV   Y KF +              +A        +V
Sbjct: 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR-AEGIKSGRMIFKKAREDARTRHHV 170

Query: 192 LSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEE 241
                 + +   KD   A   F+  +    D    + +Y  +L    E+ 
Sbjct: 171 YVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDN 220

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308

 Score = 43.9 bits (103), Expect = 2e-05
 Identities = 18/112 (16%), Positives = 38/112 (33%), Gaps = 3/112 (2%)

Query: 132 SGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD-GN 190
                E+ ++Y + +     ++ L+   YA +  E R  + K      R +  +  D   
Sbjct: 77  KLFSDEAANIYERAISTLLKKNMLLYFAYADYE-ESRMKYEKVHSIYNRLLAIEDIDPTL 135

Query: 191 VLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEED 242
           V   Y        +     +  F +A   A    HV  + A   +   +++ 
Sbjct: 136 VYIQYMKF-ARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKS 186

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530

 Score = 57.2 bits (137), Expect = 1e-09
 Identities = 17/109 (15%), Positives = 33/109 (30%), Gaps = 1/109 (0%)

Query: 133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVL 192
            K  +   +Y + +     +  LV   Y KF +              +A        +V 
Sbjct: 335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR-AEGIKSGRMIFKKAREDARTRHHVY 393

Query: 193 SMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEE 241
                + +   KD   A   F+  +    D    + +Y  +L    E+ 
Sbjct: 394 VTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDN 442

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 53.3 bits (128), Expect = 3e-08
 Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 2/101 (1%)

Query: 142 YYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI 201
             +  ++  P+D +     A       GD    E    R +   PG    ++  G  +  
Sbjct: 11  QLRAAVRHRPQDFVAWLMLADAELG-MGDTTAGEMAVQRGLALHPGHPEAVARLGR-VRW 68

Query: 202 NHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEED 242
             +    A     +A  +AP+   +       L DAG+ E 
Sbjct: 69  TQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEA 109

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 48.7 bits (116), Expect = 8e-07
 Identities = 18/127 (14%), Positives = 36/127 (28%), Gaps = 4/127 (3%)

Query: 142 YYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI 201
             Q  +  +P     +A   +     +    +A     +A  A P    +    G     
Sbjct: 45  AVQRGLALHPGHPEAVARLGRVRWT-QQRHAEAAVLLQQASDAAPEHPGIALWLGH-ALE 102

Query: 202 NHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDDQETCA--SQPNIL 259
           +   A  A + + RA    P++ ++ A    +     +    D    Q   A       +
Sbjct: 103 DAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAV 162

Query: 260 PPLTAAY 266
            P     
Sbjct: 163 EPFAFLS 169

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 49.4 bits (117), Expect = 3e-07
 Identities = 15/82 (18%), Positives = 22/82 (26%), Gaps = 1/82 (1%)

Query: 142 YYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI 201
            +QEM        L+L   A      +G +  AE     A+    G    L     L   
Sbjct: 188 IFQEMADKCSPTLLLLNGQAACHMA-QGRWEAAEGVLQEALDKDSGHPETLINLVVLSQH 246

Query: 202 NHKDAPRAKSYFDRAVHSAPDD 223
             K       Y  +   +    
Sbjct: 247 LGKPPEVTNRYLSQLKDAHRSH 268

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 12/101 (11%), Positives = 34/101 (33%), Gaps = 2/101 (1%)

Query: 142 YYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI 201
           Y+  + K     + +    A   K+   ++ KA  +    +   P + + L    + + +
Sbjct: 42  YWTNVDKNSEISSKLATELALAYKK-NRNYDKAYLFYKELLQKAPNNVDCLEACAE-MQV 99

Query: 202 NHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEED 242
                  A   +++ +    D+         + +   E+E 
Sbjct: 100 CRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEK 140

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 11/101 (10%), Positives = 30/101 (29%), Gaps = 1/101 (0%)

Query: 142 YYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI 201
           +Y+E+++  P +   L   A+     RG    A     + +  +  +       G+  ++
Sbjct: 76  FYKELLQKAPNNVDCLEACAEMQVC-RGQEKDALRMYEKILQLEADNLAANIFLGNYYYL 134

Query: 202 NHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEED 242
             +   +      + + S     +               E 
Sbjct: 135 TAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEK 175

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 9/93 (9%), Positives = 30/93 (32%), Gaps = 2/93 (2%)

Query: 131 DSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN 190
             G+E +++   Y+++++   ++         +         K  E   + + +      
Sbjct: 100 CRGQEKDALR-MYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQY 158

Query: 191 VLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD 223
                G L  +      +A++   + +   P  
Sbjct: 159 ARYRDG-LSKLFTTRYEKARNSLQKVILRFPST 190

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 45.6 bits (108), Expect = 3e-06
 Identities = 11/100 (11%), Positives = 39/100 (39%), Gaps = 3/100 (3%)

Query: 142 YYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI 201
             Q+ I+A P+++   A   ++    + D+  +     +A+  +  +  + +    +++ 
Sbjct: 32  ALQDKIRANPQNSEQWALLGEYYLW-QNDYSNSLLAYRQALQLRGENAELYAALATVLYY 90

Query: 202 --NHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGE 239
             +     + ++  D+A+    ++   L   A   +    
Sbjct: 91  QASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQAN 130

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 13/103 (12%), Positives = 34/103 (33%), Gaps = 6/103 (5%)

Query: 143 YQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN 202
           +Q +   Y      L  +A        +     +     I A P +    ++ G+  ++ 
Sbjct: 3   WQAVRAEYQRQRDPLHQFASQ-----QNPEAQLQALQDKIRANPQNSEQWALLGE-YYLW 56

Query: 203 HKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDD 245
             D   +   + +A+    ++  + A+ A  L+    +     
Sbjct: 57  QNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 46.9 bits (111), Expect = 3e-06
 Identities = 15/97 (15%), Positives = 38/97 (39%), Gaps = 5/97 (5%)

Query: 130 GDSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIR---GDFVKAEEYCGRAILAKP 186
            +      ++D   ++ I+  P++  +    A  L ++R    +  + E+    A+   P
Sbjct: 186 DNWPPSQNAID-PLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP 244

Query: 187 GDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD 223
           G  +VL       +    +  +A     +A+   P++
Sbjct: 245 GVTDVLRSAA-KFYRRKDEPDKAIELLKKALEYIPNN 280

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 43.0 bits (101), Expect = 6e-05
 Identities = 15/103 (14%), Positives = 36/103 (34%), Gaps = 5/103 (4%)

Query: 142 YYQEMIKAYPEDALVLANYAKFLKEIR--GDFVKAEEYCGRAILAKPGDGNVLSMYGDL- 198
            +++ ++  P++    +  A     +        A +   +AI   P +  +  +     
Sbjct: 160 CFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKL 219

Query: 199 --IWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGE 239
             +    ++    +   + A+  AP    VL S A+F     E
Sbjct: 220 HKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDE 262

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 20/125 (16%), Positives = 41/125 (32%), Gaps = 20/125 (16%)

Query: 133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD---- 188
            +E E      +E ++  P    VL + AKF +  + +  KA E   +A+   P +    
Sbjct: 227 EEEGEGEK-LVEEALEKAPGVTDVLRSAAKFYRR-KDEPDKAIELLKKALEYIPNNAYLH 284

Query: 189 ---GNVLSMYGDLIWINHKDAPR-----------AKSYFDRAVHSAPDDCHVLASYARFL 234
              G         +    ++              A ++  +A  +  +   V +  A   
Sbjct: 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLH 344

Query: 235 WDAGE 239
             A +
Sbjct: 345 ALADQ 349

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 39.1 bits (91), Expect = 9e-04
 Identities = 12/84 (14%), Positives = 25/84 (29%), Gaps = 4/84 (4%)

Query: 142 YYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN---VLSMYGDL 198
           + ++  +A      V +  A         + +AE Y  +    +        +   YG+ 
Sbjct: 322 HLKKADEANDNLFRVCSILASLHALA-DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNF 380

Query: 199 IWINHKDAPRAKSYFDRAVHSAPD 222
                K   +A  +F   V     
Sbjct: 381 QLYQMKCEDKAIHHFIEGVKINQK 404

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 46.3 bits (109), Expect = 6e-06
 Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 3/112 (2%)

Query: 131 DSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN 190
           + G   E++   Y++ ++ +PE A   +N A  L++ +G   +A  +   AI   P   +
Sbjct: 21  EQGNIEEAVR-LYRKALEVFPEFAAAHSNLASVLQQ-QGKLQEALMHYKEAIRISPTFAD 78

Query: 191 VLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEED 242
             S  G       +D   A   + RA+   P      ++ A    D+G   +
Sbjct: 79  AYSNMG-NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPE 129

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 42.1 bits (98), Expect = 1e-04
 Identities = 15/90 (16%), Positives = 30/90 (33%), Gaps = 2/90 (2%)

Query: 149 AYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPR 208
           + P  A  L N A   +E +G+  +A     +A+   P      S     +         
Sbjct: 4   SCPTHADSLNNLANIKRE-QGNIEEAVRLYRKALEVFPEFAAAHSNLA-SVLQQQGKLQE 61

Query: 209 AKSYFDRAVHSAPDDCHVLASYARFLWDAG 238
           A  ++  A+  +P      ++    L +  
Sbjct: 62  ALMHYKEAIRISPTFADAYSNMGNTLKEMQ 91

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 16/112 (14%), Positives = 30/112 (26%), Gaps = 2/112 (1%)

Query: 131 DSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG- 189
           D     E        + +   +   V   Y   +K        + +  G+    K     
Sbjct: 411 DLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKR-IQGLAASRKIFGKCRRLKKLVTP 469

Query: 190 NVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEE 241
           ++      + +   KD   A    +  +     D   +  Y  FL    EE 
Sbjct: 470 DIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEES 521

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 19/107 (17%), Positives = 36/107 (33%), Gaps = 17/107 (15%)

Query: 142 YYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILA--KPGD-------GNVL 192
            +++ +   P+ A +  NY  FL        ++  Y  +A+     P         G   
Sbjct: 64  SFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICS 123

Query: 193 SMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGE 239
           +  G            A++Y  R++ + P         AR    AG+
Sbjct: 124 AKQGQF--------GLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ 162

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 41.9 bits (99), Expect = 8e-05
 Identities = 16/75 (21%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 143 YQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN 202
            ++ +K+ P++ L     A+  + +     KA+E   +A+  KP    + + YG  +   
Sbjct: 31  IEDALKSDPKNELAWLVRAEIYQYL-KVNDKAQESFRQALSIKPDSAEINNNYGWFLCGR 89

Query: 203 HKDAPRAKSYFDRAV 217
                 + +YFD+A+
Sbjct: 90  LNRPAESMAYFDKAL 104

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 12/91 (13%), Positives = 29/91 (31%), Gaps = 2/91 (2%)

Query: 133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVL 192
           G  ++  +    E +    E+  V+ + A+       DF    +     +   P   + L
Sbjct: 1   GSYNKPSETVIPESVDGLQENLDVVVSLAERHYY-NCDFKMCYKLTSVVMEKDPFHASCL 59

Query: 193 SMYGDLIWINHKDAPRAKSYFDRAVHSAPDD 223
            ++   +   +K          + V   P +
Sbjct: 60  PVHIGTLVELNKAN-ELFYLSHKLVDLYPSN 89

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 43.3 bits (103), Expect = 4e-05
 Identities = 17/101 (16%), Positives = 35/101 (34%), Gaps = 2/101 (1%)

Query: 142 YYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI 201
           +  ++ +  P++  VL   +    +      ++  +   AI   P      S  G  ++ 
Sbjct: 21  HCMQLWRQEPDNTGVLLLLSSIHFQC-RRLDRSAHFSTLAIKQNPLLAEAYSNLG-NVYK 78

Query: 202 NHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEED 242
                  A  ++  A+   PD      + A  L  AG+ E 
Sbjct: 79  ERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEG 119

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 42.1 bits (100), Expect = 9e-05
 Identities = 20/93 (21%), Positives = 30/93 (32%), Gaps = 3/93 (3%)

Query: 131 DSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN 190
              +   S   +    IK  P  A   +N     KE RG   +A E+   A+  KP   +
Sbjct: 45  QCRRLDRSAH-FSTLAIKQNPLLAEAYSNLGNVYKE-RGQLQEAIEHYRHALRLKPDFID 102

Query: 191 VLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD 223
                     +   D   A   +  A+   PD 
Sbjct: 103 GYINLA-AALVAAGDMEGAVQAYVSALQYNPDL 134

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 41.4 bits (97), Expect = 5e-05
 Identities = 8/91 (8%), Positives = 21/91 (23%), Gaps = 2/91 (2%)

Query: 142 YYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI 201
            +Q +      D+          + + G +  A        +    +        +   +
Sbjct: 43  VFQALCVLDHYDSRFFLGLGACRQAM-GQYDLAIHSYSYGAVMDIXEPRFPFHAAE-CLL 100

Query: 202 NHKDAPRAKSYFDRAVHSAPDDCHVLASYAR 232
              +   A+S    A     +         R
Sbjct: 101 QXGELAEAESGLFLAQELIANXPEFXELSTR 131

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 40.8 bits (96), Expect = 5e-05
 Identities = 17/101 (16%), Positives = 31/101 (30%), Gaps = 4/101 (3%)

Query: 143 YQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN 202
            + M+    ++ L+     K   E    F  A  +   A+   P         G      
Sbjct: 8   LEAMLAQGTDNMLLRFTLGKTYAE-HEQFDAALPHLRAALDFDPTYSVAWKWLGK-TLQG 65

Query: 203 HKDAPRAKSYFDRAVHSAPD--DCHVLASYARFLWDAGEEE 241
             D   A+  ++  + +A    D  V+     FL     E+
Sbjct: 66  QGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLARED 106

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 18/113 (15%), Positives = 40/113 (35%), Gaps = 5/113 (4%)

Query: 131 DSGKESESMDVYYQEMIKA--YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD 188
           +  +  E+      E  +   YPE + V  N      ++     +A+EY  +++      
Sbjct: 117 EQKRYEEAYQ-RLLEASQDTLYPERSRVFENLGLVSLQM-KKPAQAKEYFEKSLRLNRNQ 174

Query: 189 GNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEE 241
            +V     DL++   ++   A+ Y+D        +   L    R      + +
Sbjct: 175 PSVALEMADLLY-KEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRD 226

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 16/100 (16%), Positives = 37/100 (37%), Gaps = 2/100 (2%)

Query: 143 YQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN 202
             +  K   E             + RG+  +A+    +A+   P   +  +    +++  
Sbjct: 26  PLKTDKGRDEARDAYIQLGLGYLQ-RGNTEQAKVPLRKALEIDPSSADAHAALA-VVFQT 83

Query: 203 HKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEED 242
             +   A   + +A+ S   +  VL +Y  FL++    E+
Sbjct: 84  EMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEE 123

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 39.2 bits (92), Expect = 7e-04
 Identities = 22/107 (20%), Positives = 38/107 (35%), Gaps = 18/107 (16%)

Query: 142 YYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILA--KPGD-------GNVL 192
            Y++ + +   +A VL NY  FL E +  + +A +    A      P         G V 
Sbjct: 93  EYRKALASDSRNARVLNNYGGFLYE-QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVS 151

Query: 193 SMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGE 239
                          +AK YF++++    +   V    A  L+   E
Sbjct: 152 LQMKKP--------AQAKEYFEKSLRLNRNQPSVALEMADLLYKERE 190

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 11/82 (13%), Positives = 27/82 (32%), Gaps = 2/82 (2%)

Query: 142 YYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI 201
           +++ +      +   +   A   +     F +A +    A      D   +   G    +
Sbjct: 58  FFRFLCIYDFYNVDYIMGLAAIYQIK-EQFQQAADLYAVAFALGKNDYTPVFHTGQ-CQL 115

Query: 202 NHKDAPRAKSYFDRAVHSAPDD 223
             K   +AK  F+  +  + D+
Sbjct: 116 RLKAPLKAKECFELVIQHSNDE 137

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493

 Score = 41.0 bits (95), Expect = 2e-04
 Identities = 15/114 (13%), Positives = 30/114 (26%), Gaps = 2/114 (1%)

Query: 128 GDGDSGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG 187
                 K   SM            E  L+  N+  ++ + +       +          G
Sbjct: 260 AVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLK-KRGLELFRKLFIELGNEGVG 318

Query: 188 DGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEE 241
               +     + +          + F   +   PD   +   +  FL   G+EE
Sbjct: 319 PHVFIY-CAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEE 371

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 3e-04
 Identities = 23/157 (14%), Positives = 38/157 (24%), Gaps = 53/157 (33%)

Query: 140 DVYYQEMIKAY--------------PEDALVLANYAKF-LKEIRGDFVKAE--EYCGRAI 182
           +V   +   A+                D L  A      L          E      + +
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311

Query: 183 LAKPGD-------GN--VLSMYGDLI------W------------------INHKDAPRA 209
             +P D        N   LS+  + I      W                  +N  +    
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371

Query: 210 KSYFDR-AVHSAPDDCHVLASYARFLWDAGEEEDDDD 245
           +  FDR +V   P   H+       +W    + D   
Sbjct: 372 RKMFDRLSVF--PPSAHIPTILLSLIWFDVIKSDVMV 406

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 38.6 bits (90), Expect = 4e-04
 Identities = 15/91 (16%), Positives = 25/91 (27%), Gaps = 2/91 (2%)

Query: 142 YYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI 201
            +Q +      DA          + + G + +A +      L    +            +
Sbjct: 40  IFQALCMLDHYDARYFLGLGACRQSL-GLYEQALQSYSYGALMDINEPRFPFHAA-ECHL 97

Query: 202 NHKDAPRAKSYFDRAVHSAPDDCHVLASYAR 232
              D   A+S F  A   A       A  AR
Sbjct: 98  QLGDLDGAESGFYSARALAAAQPAHEALAAR 128

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 39.3 bits (92), Expect = 8e-04
 Identities = 18/118 (15%), Positives = 38/118 (32%), Gaps = 10/118 (8%)

Query: 133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD---- 188
            K  +     + E  + +PE   V   +A+ L +   DF KA +    AI  +       
Sbjct: 352 NKFDDCET-LFSEAKRKFPEAPEVPNFFAEILTDK-NDFDKALKQYDLAIELENKLDGIY 409

Query: 189 ---GNVLSMYGDLI-WINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEED 242
                ++     L      ++   A +  ++A    P         A+      + ++
Sbjct: 410 VGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDE 467

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 39.4 bits (92), Expect = 9e-04
 Identities = 11/81 (13%), Positives = 26/81 (32%), Gaps = 2/81 (2%)

Query: 143 YQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN 202
           Y   I    + + +L   A  L   R  F+       + +   P + +V  ++   +   
Sbjct: 294 YLSSINGLEKSSDLLLCKADTLFV-RSRFIDVLAITTKILEIDPYNLDVYPLHLASLH-E 351

Query: 203 HKDAPRAKSYFDRAVHSAPDD 223
             +  +     +  V   P+ 
Sbjct: 352 SGEKNKLYLISNDLVDRHPEK 372

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	266
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.77
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.75
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.73
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.72
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.72
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.71
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.71
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.69
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.68
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.67
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.67
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.67
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.67
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.67
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.66
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.66
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.66
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.64
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.64
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.64
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.64
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.63
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.63
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.63
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.63
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.62
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.62
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.62
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.61
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.61
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.61
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.61
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.61
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.61
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.6
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.59
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.59
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.58
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.58
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.58
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.57
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.57
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.56
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.56
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.55
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.55
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.55
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.55
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.55
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.54
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.54
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.54
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.53
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.53
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.53
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.53
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.53
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.53
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.52
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.52
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.52
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.52
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.52
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.52
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.52
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.52
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.52
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.51
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.51
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.51
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.51
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.51
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.51
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.51
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.5
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.5
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.5
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.5
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.5
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.49
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.49
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.49
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.48
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.48
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.48
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.48
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.48
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.47
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.47
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.46
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.45
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.45
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.45
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.44
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.44
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.44
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.43
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.43
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.42
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.42
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.41
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.41
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.41
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.4
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.4
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.4
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.4
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.39
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.39
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.38
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.38
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.38
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.38
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.37
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.37
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.37
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.36
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.36
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.35
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.35
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.34
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.34
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.32
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.32
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.32
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.32
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.31
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.31
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.31
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.31
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.31
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.3
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.29
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.27
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.24
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.23
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.23
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.22
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.22
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.21
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.2
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.2
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.2
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.2
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.19
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.18
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.18
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.18
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.14
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.14
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.13
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.13
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.12
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.12
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.12
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.1
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.1
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.1
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.1
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.09
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.09
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.08
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.07
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.06
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.05
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.05
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.05
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.04
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.04
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.03
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	99.03
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.03
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.01
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.01
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.98
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.96
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.95
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.94
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.94
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.94
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.89
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.88
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.88
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.87
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.86
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.85
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.82
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.82
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.81
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.81
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.81
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.78
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.77
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.76
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.75
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.74
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.64
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.6
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.5
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.35
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.29
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.28
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.25
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.24
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.23
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.22
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.17
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.16
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.15
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.14
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.1
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.95
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.93
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	97.79
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.76
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	97.73
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.72
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.58
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.57
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.52
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.48
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.42
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.32
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	96.8
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.74
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.69
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	96.57
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	96.57
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.47
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.26
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	95.95
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	95.67
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	95.67
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.09
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.66
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	94.6
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	94.53
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	94.48
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	92.34
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	91.95
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	89.45
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	88.27
2br9_A	234	14-3-3E, 14-3-3 protein epsilon; cell regulator pr	86.4
3iqu_A	236	14-3-3 protein sigma; signal transuction, nucleus,	86.19
2npm_A	260	14-3-3 domain containing protein; cell regulator p	85.78
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	85.52
3uzd_A	248	14-3-3 protein gamma; structural genomics, SGC, st	85.5
2npm_A	260	14-3-3 domain containing protein; cell regulator p	85.45
1o9d_A	260	14-3-3-like protein C; protein-binding, fusicoccin	85.1
3iqu_A	236	14-3-3 protein sigma; signal transuction, nucleus,	84.88
1o9d_A	260	14-3-3-like protein C; protein-binding, fusicoccin	84.71
2o8p_A	227	14-3-3 domain containing protein; signaling protei	84.61
3ubw_A	261	14-3-3E, 14-3-3 protein epsilon; adapter protein,	84.12
3ubw_A	261	14-3-3E, 14-3-3 protein epsilon; adapter protein,	83.91
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	83.67
3efz_A	268	14-3-3 protein; 14-3-3, cell regulation, structura	81.33
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	80.6

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.77  E-value=1.1e-17  Score=132.29  Aligned_cols=99  Identities=17%  Similarity=0.191  Sum_probs=93.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+.+|++||+++|+++.+|+++|.++. ..|++++|+.+|++||+++|+++.+|+++|.++.. .|++++|+.+|
T Consensus        27 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~~~~~~A~~~~  104 (126)
T 4gco_A           27 GDYPTAMRHYNEAVKRDPENAILYSNRAACLT-KLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA-MREWSKAQRAY  104 (126)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHH-hhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-CCCHHHHHHHH
Confidence            68999999999999999999999999999886 58999999999999999999999999999999876 89999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHH
Q 024536          214 DRAVHSAPDDCHVLASYARFL  234 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll  234 (266)
                      ++|++++|++..++..++.++
T Consensus       105 ~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A          105 EDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHHHCcCCHHHHHHHHHhc
Confidence            999999999999999988764

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.75  E-value=2.4e-18  Score=139.40  Aligned_cols=112  Identities=14%  Similarity=0.139  Sum_probs=103.4

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024536          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY  212 (266)
Q Consensus       133 ~~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~  212 (266)
                      .+++++|++.|++++..+|+++.+++++|.+++ ..|++++|+.+|++||+++|+++.+|.++|.++.. .|++++|+.+
T Consensus        10 ~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~-~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~~~~~~A~~~   87 (150)
T 4ga2_A           10 KADVERYIASVQGSTPSPRQKSIKGFYFAKLYY-EAKEYDLAKKYICTYINVQERDPKAHRFLGLLYEL-EENTDKAVEC   87 (150)
T ss_dssp             HHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHH
T ss_pred             cChHHHHHHHHHHhcccCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCchHHHHHH
Confidence            368999999999999999999999999999876 58999999999999999999999999999998876 8999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536          213 FDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       213 ~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      |++|++++|+++.++.++|.++...+++++|.+.
T Consensus        88 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~  121 (150)
T 4ga2_A           88 YRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKY  121 (150)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Confidence            9999999999999999999999999999887643

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.73  E-value=5.6e-17  Score=131.31  Aligned_cols=105  Identities=17%  Similarity=0.185  Sum_probs=96.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH-H
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS-Y  212 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~-~  212 (266)
                      +++++|+.+|+++|+++|+++.+|+++|.++. ..|++++|+.+|++||+++|+++.++.++|.++.. .+++++|.. +
T Consensus        45 ~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~aa~~~  122 (150)
T 4ga2_A           45 KEYDLAKKYICTYINVQERDPKAHRFLGLLYE-LEENTDKAVECYRRSVELNPTQKDLVLKIAELLCK-NDVTDGRAKYW  122 (150)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HCSSSSHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCChHHHHHHH
Confidence            68999999999999999999999999999886 68999999999999999999999999999999877 678876655 5


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 024536          213 FDRAVHSAPDDCHVLASYARFLWDAGEE  240 (266)
Q Consensus       213 ~ekAL~l~P~da~a~~~lA~ll~~~G~~  240 (266)
                      +++|++++|+++.++...+.++...|+.
T Consensus       123 ~~~al~l~P~~~~~~~l~~~ll~~~G~d  150 (150)
T 4ga2_A          123 VERAAKLFPGSPAVYKLKEQLLDCEGED  150 (150)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHTCCCC
T ss_pred             HHHHHHhCcCCHHHHHHHHHHHHHhCcC
Confidence            6999999999999999999998888763

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.72  E-value=3.7e-17  Score=139.37  Aligned_cols=110  Identities=14%  Similarity=0.031  Sum_probs=81.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc----------
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINH----------  203 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~----------  203 (266)
                      +++++|+.+|+++++++|+++.+++++|.++. ..|++++|+.+|++|++++|+++.++.++|.++.. .          
T Consensus        19 g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~~~~~~~~~~~   96 (217)
T 2pl2_A           19 GRYDAALTLFERALKENPQDPEALYWLARTQL-KLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVA-LYRQAEDRERG   96 (217)
T ss_dssp             TCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHTCSSHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-hhhhhhhhccc
Confidence            56777777777777777777777777777665 46777777777777777777777777777776655 5          


Q ss_pred             -CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccc
Q 024536          204 -KDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDD  245 (266)
Q Consensus       204 -gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~  245 (266)
                       |++++|+.+|++|++++|+++.++..+|.++...|++++|++
T Consensus        97 ~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~  139 (217)
T 2pl2_A           97 KGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEA  139 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHH
Confidence             677777777777777777777777777777777777777764

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.72  E-value=5.7e-17  Score=138.17  Aligned_cols=113  Identities=18%  Similarity=0.160  Sum_probs=96.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+.+|+++++++|+++.+|.++|.++. ..|++++|+.+|++|++++ +++.++.++|.++.. .|++++|+.+|
T Consensus        98 g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~-~g~~~~A~~~~  174 (217)
T 2pl2_A           98 GYLEQALSVLKDAERVNPRYAPLHLQRGLVYA-LLGERDKAEASLKQALALE-DTPEIRSALAELYLS-MGRLDEALAQY  174 (217)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH-HTCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            58899999999999999999999999999886 6899999999999999999 999999999999877 79999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCcccccccccc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDDQ  249 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~~  249 (266)
                      +++++++|+++.++.++|.++...|++++|++.-+.
T Consensus       175 ~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~  210 (217)
T 2pl2_A          175 AKALEQAPKDLDLRVRYASALLLKGKAEEAARAAAL  210 (217)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHTC-------------
T ss_pred             HHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            999999999999999999999999999999976443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.71  E-value=7.1e-17  Score=163.61  Aligned_cols=109  Identities=21%  Similarity=0.239  Sum_probs=62.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+++|++||+++|+++.+|+|+|.++. ..|++++|+.+|++||+++|+++.+|+++|.++.. .|++++|+.+|
T Consensus        23 G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~-~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~-~g~~~~A~~~~  100 (723)
T 4gyw_A           23 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ-QQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE-MQDVQGALQCY  100 (723)
T ss_dssp             TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            45555555666666666655555555555554 35555555555555555555555555555555544 45555555555


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDD  244 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~  244 (266)
                      ++|++++|+++.++.++|.++..+|++++|+
T Consensus       101 ~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi  131 (723)
T 4gyw_A          101 TRAIQINPAFADAHSNLASIHKDSGNIPEAI  131 (723)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            5555555555555555555555555555555

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.71  E-value=4.5e-18  Score=140.29  Aligned_cols=106  Identities=8%  Similarity=-0.011  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024536          140 DVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHS  219 (266)
Q Consensus       140 ~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l  219 (266)
                      ...|+++++++|+++.+++++|..++ ..|++++|+.+|++|+.++|+++.+|.++|.++.. .|++++|+.+|++|+++
T Consensus        22 ~~~l~~al~l~p~~~~~~~~lg~~~~-~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~-~g~~~~Ai~~~~~al~l   99 (151)
T 3gyz_A           22 GATLKDINAIPDDMMDDIYSYAYDFY-NKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQI-KEQFQQAADLYAVAFAL   99 (151)
T ss_dssp             SCCTGGGCCSCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHhCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HccHHHHHHHHHHHHhh
Confidence            34677888889999999999998876 58999999999999999999999999999988866 78999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCcccccccc
Q 024536          220 APDDCHVLASYARFLWDAGEEEDDDDGD  247 (266)
Q Consensus       220 ~P~da~a~~~lA~ll~~~G~~~eA~~~~  247 (266)
                      +|+++.+++++|.+|...|++++|++..
T Consensus       100 ~P~~~~~~~~lg~~~~~lg~~~eA~~~~  127 (151)
T 3gyz_A          100 GKNDYTPVFHTGQCQLRLKAPLKAKECF  127 (151)
T ss_dssp             SSSCCHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999999999988543

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.69  E-value=3e-16  Score=159.00  Aligned_cols=110  Identities=22%  Similarity=0.166  Sum_probs=106.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+++|++||+++|+++.+|+|+|.++. ..|++++|+++|++||+++|+++.+|+++|.++.. .|++++|+.+|
T Consensus        57 g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~-~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~-~g~~~eAi~~~  134 (723)
T 4gyw_A           57 GKLQEALMHYKEAIRISPTFADAYSNMGNTLK-EMQDVQGALQCYTRAIQINPAFADAHSNLASIHKD-SGNIPEAIASY  134 (723)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            68999999999999999999999999999886 58999999999999999999999999999999876 89999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCcccccc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDD  245 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~  245 (266)
                      ++|++++|+++.++.++|.++..++++++|++
T Consensus       135 ~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~  166 (723)
T 4gyw_A          135 RTALKLKPDFPDAYCNLAHCLQIVCDWTDYDE  166 (723)
T ss_dssp             HHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHH
T ss_pred             HHHHHhCCCChHHHhhhhhHHHhcccHHHHHH
Confidence            99999999999999999999999999999984

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.68  E-value=1.6e-16  Score=134.50  Aligned_cols=106  Identities=11%  Similarity=0.156  Sum_probs=99.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHH----------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLAN----------------YAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGD  197 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~n----------------lA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~  197 (266)
                      +++++|+.+|+++++++|+++.+|++                +|.++. ..|++++|+.+|++||+++|+++.++.++|.
T Consensus        18 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~   96 (208)
T 3urz_A           18 GQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYK-KNRNYDKAYLFYKELLQKAPNNVDCLEACAE   96 (208)
T ss_dssp             TCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence            68999999999999999999999999                999876 6899999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcc
Q 024536          198 LIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEE  241 (266)
Q Consensus       198 ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~  241 (266)
                      ++.. .|++++|+.+|+++++++|+++.++.++|.+++..++.+
T Consensus        97 ~~~~-~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~  139 (208)
T 3urz_A           97 MQVC-RGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQE  139 (208)
T ss_dssp             HHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHH-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHH
Confidence            9877 799999999999999999999999999999988776543

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.67  E-value=6.6e-17  Score=131.00  Aligned_cols=103  Identities=11%  Similarity=-0.036  Sum_probs=77.5

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 024536          141 VYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSA  220 (266)
Q Consensus       141 ~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~  220 (266)
                      ..|+++++++|+++.+++++|.++. ..|++++|+.+|++++.++|+++.+|+++|.++.. .|++++|+.+|++|+.++
T Consensus         8 ~~~~~al~~~p~~~~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~l~   85 (148)
T 2vgx_A            8 GTIAMLNEISSDTLEQLYSLAFNQY-QSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQA-MGQYDLAIHSYSYGAVMD   85 (148)
T ss_dssp             CSHHHHTTCCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHS
T ss_pred             hhHHHHHcCCHhhHHHHHHHHHHHH-HcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcC
Confidence            4677777777777777777777665 46777777777777777777777777777777655 677777777777777777


Q ss_pred             CCCHHHHHHHHHHHHHcCCcccccc
Q 024536          221 PDDCHVLASYARFLWDAGEEEDDDD  245 (266)
Q Consensus       221 P~da~a~~~lA~ll~~~G~~~eA~~  245 (266)
                      |+++.++.++|.++...|++++|++
T Consensus        86 p~~~~~~~~lg~~~~~~g~~~~A~~  110 (148)
T 2vgx_A           86 IXEPRFPFHAAECLLQXGELAEAES  110 (148)
T ss_dssp             TTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CCCchHHHHHHHHHHHcCCHHHHHH
Confidence            7777777777777777777777774

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.67  E-value=1.1e-16  Score=126.56  Aligned_cols=102  Identities=16%  Similarity=0.044  Sum_probs=93.8

Q ss_pred             HHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 024536          145 EMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDC  224 (266)
Q Consensus       145 rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da  224 (266)
                      |+..+||+.+.++.+.|..++ ..|++++|+.+|++||+++|+++.+|.++|.++.. .|++++|+.+|++||+++|+++
T Consensus         4 r~a~inP~~a~~~~~~G~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~p~~~   81 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYF-KKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTK-LMEFQRALDDCDTCIRLDSKFI   81 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHh-hccHHHHHHHHHHHHHhhhhhh
Confidence            556689999999999999887 58999999999999999999999999999999877 8999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCccccccccc
Q 024536          225 HVLASYARFLWDAGEEEDDDDGDD  248 (266)
Q Consensus       225 ~a~~~lA~ll~~~G~~~eA~~~~~  248 (266)
                      .++..+|.++..+|++++|++..+
T Consensus        82 ~a~~~lg~~~~~~~~~~~A~~~~~  105 (126)
T 4gco_A           82 KGYIRKAACLVAMREWSKAQRAYE  105 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHH
Confidence            999999999999999999996543

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.67  E-value=3.6e-15  Score=112.09  Aligned_cols=106  Identities=20%  Similarity=0.262  Sum_probs=100.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+.+|+++++.+|+++.++.++|.++. ..+++++|+.+|++++.++|+++.++..+|.++.. .+++++|+.+|
T Consensus        26 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~  103 (131)
T 2vyi_A           26 ENFEAAVHFYGKAIELNPANAVYFCNRAAAYS-KLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSS-LNKHVEAVAYY  103 (131)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHH-hCCHHHHHHHH
Confidence            68999999999999999999999999999886 58999999999999999999999999999998876 89999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCcc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEE  241 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~  241 (266)
                      ++++.++|+++.++..++.++...|+++
T Consensus       104 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~  131 (131)
T 2vyi_A          104 KKALELDPDNETYKSNLKIAELKLREAP  131 (131)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999988764

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.67  E-value=1.9e-15  Score=116.55  Aligned_cols=101  Identities=23%  Similarity=0.134  Sum_probs=94.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+.+|+++++++|+++.+|.++|.++. ..|++++|+.+|++|++++|+++.+++++|.++.. .|++++|+.+|
T Consensus        18 ~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~~~~~~A~~~~   95 (126)
T 3upv_A           18 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALA-KLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA-VKEYASALETL   95 (126)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-HhCHHHHHHHH
Confidence            68999999999999999999999999999886 58999999999999999999999999999999876 89999999999


Q ss_pred             HHHHHhC------CCCHHHHHHHHHHHHH
Q 024536          214 DRAVHSA------PDDCHVLASYARFLWD  236 (266)
Q Consensus       214 ekAL~l~------P~da~a~~~lA~ll~~  236 (266)
                      +++++++      |++..++..++.+...
T Consensus        96 ~~al~~~p~~~~~p~~~~~~~~l~~~~~~  124 (126)
T 3upv_A           96 DAARTKDAEVNNGSSAREIDQLYYKASQQ  124 (126)
T ss_dssp             HHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence            9999999      9999999888877654

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.67  E-value=6.9e-16  Score=124.73  Aligned_cols=100  Identities=18%  Similarity=0.140  Sum_probs=91.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+.+|+++++++|+++.+|+++|.++. ..|++++|+.+|++||+++|+++.+|+++|.++.. .|++++|+.+|
T Consensus        25 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~  102 (164)
T 3sz7_A           25 KEYSKAIDLYTQALSIAPANPIYLSNRAAAYS-ASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD-MADYKGAKEAY  102 (164)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-ccCHHHHHHHH
Confidence            68999999999999999999999999999886 58999999999999999999999999999999877 89999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHH
Q 024536          214 DRAVHSAPDDCHVLASYARFLW  235 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~  235 (266)
                      +++++++|+++.++...+....
T Consensus       103 ~~al~~~p~~~~~~~~~~l~~~  124 (164)
T 3sz7_A          103 EKGIEAEGNGGSDAMKRGLETT  124 (164)
T ss_dssp             HHHHHHHSSSCCHHHHHHHHHH
T ss_pred             HHHHHhCCCchHHHHHHHHHHH
Confidence            9999999999886555554433

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.66  E-value=1.4e-15  Score=125.26  Aligned_cols=89  Identities=16%  Similarity=0.163  Sum_probs=85.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+.+|+++++++|+++.+|+++|.++. ..|++++|+.+|++|++++|+++.+|+++|.++.. .|++++|+.+|
T Consensus        50 g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~-~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~-lg~~~eA~~~~  127 (151)
T 3gyz_A           50 GRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQ-IKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR-LKAPLKAKECF  127 (151)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            68999999999999999999999999999886 68999999999999999999999999999999876 89999999999


Q ss_pred             HHHHHhCCCCH
Q 024536          214 DRAVHSAPDDC  224 (266)
Q Consensus       214 ekAL~l~P~da  224 (266)
                      ++|++++|+.+
T Consensus       128 ~~al~l~~~~~  138 (151)
T 3gyz_A          128 ELVIQHSNDEK  138 (151)
T ss_dssp             HHHHHHCCCHH
T ss_pred             HHHHHhCCCHH
Confidence            99999999876

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.66  E-value=5.6e-16  Score=145.58  Aligned_cols=111  Identities=12%  Similarity=0.068  Sum_probs=102.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGD-FVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY  212 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd-~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~  212 (266)
                      +++++|+++|++||+++|+++.+|+++|.++. ..|+ +++|+.+|++||+++|+++.+|+++|.++.. .|++++|+.+
T Consensus       111 g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~-~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~-~g~~~eAl~~  188 (382)
T 2h6f_A          111 ERSERAFKLTRDAIELNAANYTVWHFRRVLLK-SLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEW-LRDPSQELEF  188 (382)
T ss_dssp             CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCCTTHHHH
T ss_pred             CChHHHHHHHHHHHHhCccCHHHHHHHHHHHH-HcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-ccCHHHHHHH
Confidence            57899999999999999999999999999886 5785 9999999999999999999999999998876 7899999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536          213 FDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       213 ~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      |++||+++|+++.+|.++|.++...|++++|++.
T Consensus       189 ~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~  222 (382)
T 2h6f_A          189 IADILNQDAKNYHAWQHRQWVIQEFKLWDNELQY  222 (382)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHH
T ss_pred             HHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHH
Confidence            9999999999999999999999999999999854

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.66  E-value=1.4e-15  Score=123.76  Aligned_cols=111  Identities=14%  Similarity=0.086  Sum_probs=80.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcC----------------------------------CHHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRG----------------------------------DFVKAEEYCG  179 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~g----------------------------------d~e~A~~~~e  179 (266)
                      +++++|+.+|++||+++|+++.+|.++|.++. ..|                                  +++.|..+++
T Consensus        19 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~   97 (184)
T 3vtx_A           19 GDFDGAIRAYKKVLKADPNNVETLLKLGKTYM-DIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQ   97 (184)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            68899999999999999999999999988764 344                                  4555555555


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536          180 RAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       180 rAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      +|+.++|++..++..+|.++.. .|++++|+.+|+++++++|+++.++.++|.++..+|++++|++.
T Consensus        98 ~a~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~  163 (184)
T 3vtx_A           98 RAIALNTVYADAYYKLGLVYDS-MGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKY  163 (184)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHhCccchHHHHHHHHHHHH-hCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHH
Confidence            5555666666666666665544 57777777777777777777777777777777777777777754

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.64  E-value=2.7e-15  Score=126.48  Aligned_cols=113  Identities=14%  Similarity=0.096  Sum_probs=106.0

Q ss_pred             CCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYP-EDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY  212 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P-~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~  212 (266)
                      +++++|+.+|+++++++| .+..+++++|.++. ..|++++|+.+|++|+.++|+++.++.++|.++.. .|++++|+.+
T Consensus        21 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~~~A~~~   98 (228)
T 4i17_A           21 KNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCAD-NIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRD-MKNNQEYIAT   98 (228)
T ss_dssp             TCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHH-TTCHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHH-HhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH-cccHHHHHHH
Confidence            689999999999999999 99999999999876 68999999999999999999999999999999876 8999999999


Q ss_pred             HHHHHHhCCCCH-------HHHHHHHHHHHHcCCccccccccc
Q 024536          213 FDRAVHSAPDDC-------HVLASYARFLWDAGEEEDDDDGDD  248 (266)
Q Consensus       213 ~ekAL~l~P~da-------~a~~~lA~ll~~~G~~~eA~~~~~  248 (266)
                      |+++++++|+++       .++..+|.++...|++++|++..+
T Consensus        99 ~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~  141 (228)
T 4i17_A           99 LTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYK  141 (228)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHH
Confidence            999999999999       669999999999999999996543

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.64  E-value=2.1e-15  Score=114.57  Aligned_cols=104  Identities=19%  Similarity=0.159  Sum_probs=98.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+.+|+++++.+|+++.++.++|.++. ..+++++|+.+|++++.++|+++.++.++|.++.. .+++++|+.+|
T Consensus        30 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~  107 (133)
T 2lni_A           30 GDYPQAMKHYTEAIKRNPKDAKLYSNRAACYT-KLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEA-MKDYTKAMDVY  107 (133)
T ss_dssp             TCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHT-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-HhhHHHHHHHH
Confidence            68899999999999999999999999999876 58999999999999999999999999999998876 89999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCC
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGE  239 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~  239 (266)
                      ++++.++|++..++..++.++..+++
T Consensus       108 ~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A          108 QKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            99999999999999999999988764

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.64  E-value=3.3e-16  Score=124.46  Aligned_cols=103  Identities=8%  Similarity=-0.081  Sum_probs=63.2

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 024536          141 VYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSA  220 (266)
Q Consensus       141 ~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~  220 (266)
                      ..|+++++++|+++.+++++|..+. ..|++++|+.+|++++.++|+++.+|+++|.++.. .|++++|+.+|++|+.++
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~   82 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQY-QAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQS-LGLYEQALQSYSYGALMD   82 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHC
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHH-HHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcC
Confidence            3556666666666666666666554 35666666666666666666666666666665544 566666666666666666


Q ss_pred             CCCHHHHHHHHHHHHHcCCcccccc
Q 024536          221 PDDCHVLASYARFLWDAGEEEDDDD  245 (266)
Q Consensus       221 P~da~a~~~lA~ll~~~G~~~eA~~  245 (266)
                      |+++.++.++|.++...|++++|++
T Consensus        83 p~~~~~~~~lg~~~~~~g~~~~A~~  107 (142)
T 2xcb_A           83 INEPRFPFHAAECHLQLGDLDGAES  107 (142)
T ss_dssp             TTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHH
Confidence            6666666666666666666666653

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.64  E-value=6.9e-16  Score=125.47  Aligned_cols=114  Identities=11%  Similarity=0.146  Sum_probs=103.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH--HHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDA--PRAKS  211 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~--deAi~  211 (266)
                      +++++|+.+|+++++.+|+++.+|+.+|.++. ..|++++|+.+|++|+.++|+++.++.++|.+++...+++  ++|+.
T Consensus        24 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~  102 (177)
T 2e2e_A           24 QNPEAQLQALQDKIRANPQNSEQWALLGEYYL-WQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRA  102 (177)
T ss_dssp             ---CCCCHHHHHHHHHCCSCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHH
Confidence            67899999999999999999999999999886 5899999999999999999999999999999844447898  99999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccccc
Q 024536          212 YFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDD  248 (266)
Q Consensus       212 ~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~  248 (266)
                      +|+++++++|+++.++..+|.++...|++++|++.-+
T Consensus       103 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  139 (177)
T 2e2e_A          103 MIDKALALDSNEITALMLLASDAFMQANYAQAIELWQ  139 (177)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            9999999999999999999999999999999996543

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.63  E-value=2.2e-15  Score=122.00  Aligned_cols=93  Identities=9%  Similarity=-0.020  Sum_probs=87.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+.+|+++++++|+++.+|+++|.++. ..|++++|+.+|++|+.++|+++.+++++|.++.. .|++++|+.+|
T Consensus        35 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~-~g~~~~A~~~~  112 (148)
T 2vgx_A           35 GXYEDAHXVFQALCVLDHYDSRFFLGLGACRQ-AMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQ-XGELAEAESGL  112 (148)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHcCcccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH-cCCHHHHHHHH
Confidence            68999999999999999999999999999886 68999999999999999999999999999999876 89999999999


Q ss_pred             HHHHHhCCCCHHHHH
Q 024536          214 DRAVHSAPDDCHVLA  228 (266)
Q Consensus       214 ekAL~l~P~da~a~~  228 (266)
                      ++|++++|+++....
T Consensus       113 ~~al~~~p~~~~~~~  127 (148)
T 2vgx_A          113 FLAQELIANXPEFXE  127 (148)
T ss_dssp             HHHHHHHTTCGGGHH
T ss_pred             HHHHHHCcCCCcchH
Confidence            999999999876543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.63  E-value=7.9e-15  Score=119.33  Aligned_cols=90  Identities=19%  Similarity=0.080  Sum_probs=85.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      ++++.|+..+.++++++|+++.++..+|.++. ..|++++|+.+|+++++++|+++.++.++|.++.. .|++++|+.+|
T Consensus        87 ~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~  164 (184)
T 3vtx_A           87 DEKQAAIDALQRAIALNTVYADAYYKLGLVYD-SMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEG-KGLRDEAVKYF  164 (184)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCccchHHHHHHHHHHH-HhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHH-CCCHHHHHHHH
Confidence            68999999999999999999999999999886 68999999999999999999999999999999876 89999999999


Q ss_pred             HHHHHhCCCCHH
Q 024536          214 DRAVHSAPDDCH  225 (266)
Q Consensus       214 ekAL~l~P~da~  225 (266)
                      ++||+++|+++.
T Consensus       165 ~~al~~~p~~a~  176 (184)
T 3vtx_A          165 KKALEKEEKKAK  176 (184)
T ss_dssp             HHHHHTTHHHHH
T ss_pred             HHHHhCCccCHH
Confidence            999999998754

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.63  E-value=5.3e-15  Score=116.77  Aligned_cols=111  Identities=16%  Similarity=0.063  Sum_probs=102.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+.+|+++++++|+++.++.++|.++. ..+++++|+.+|++++.++|+++.++.++|.++.. .|++++|+.+|
T Consensus        27 ~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~  104 (166)
T 1a17_A           27 KDYENAIKFYSQAIELNPSNAIYYGNRSLAYL-RTECYGYALGDATRAIELDKKYIKGYYRRAASNMA-LGKFRAALRDY  104 (166)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-hccHHHHHHHH
Confidence            68999999999999999999999999999876 58999999999999999999999999999998876 89999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHH--HHHcCCccccccc
Q 024536          214 DRAVHSAPDDCHVLASYARF--LWDAGEEEDDDDG  246 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~l--l~~~G~~~eA~~~  246 (266)
                      ++++.++|++..++..++.+  +...|++++|++.
T Consensus       105 ~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~  139 (166)
T 1a17_A          105 ETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG  139 (166)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            99999999999988555554  8888999999854

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.63  E-value=8.5e-16  Score=118.23  Aligned_cols=108  Identities=13%  Similarity=0.164  Sum_probs=94.1

Q ss_pred             CCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 024536          133 GKESESMDVYYQEMIKA---YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRA  209 (266)
Q Consensus       133 ~~~~eeA~~~y~rALel---~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deA  209 (266)
                      .+++++|+.+|++|+++   +|+++.+++++|.++. ..|++++|+.+|++|++++|+++.+++++|.++.. .|++++|
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A   80 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFR-TLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYN-LGRYEQG   80 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-cCCHHHH
Confidence            46889999999999999   6999999999999886 58999999999999999999999999999999877 7999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccc
Q 024536          210 KSYFDRAVHSAPDDCHVLASYARFLWDAGEEED  242 (266)
Q Consensus       210 i~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~e  242 (266)
                      +.+|++++.+.|+++.+......+....+..++
T Consensus        81 ~~~~~~al~~~p~~~~~~~~~~ai~~~~~~l~~  113 (117)
T 3k9i_A           81 VELLLKIIAETSDDETIQSYKQAILFYADKLDE  113 (117)
T ss_dssp             HHHHHHHHHHHCCCHHHHHTHHHHHHHTTCTTC
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999987766666666665544

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.62  E-value=4.4e-15  Score=117.92  Aligned_cols=98  Identities=15%  Similarity=-0.021  Sum_probs=89.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+.+|+++++.+|+++.+|+++|.++. ..|++++|+.+|++|+.++|+++.+++++|.++.. .|++++|+.+|
T Consensus        32 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~  109 (142)
T 2xcb_A           32 GKWDDAQKIFQALCMLDHYDARYFLGLGACRQ-SLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ-LGDLDGAESGF  109 (142)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            68999999999999999999999999999886 68999999999999999999999999999999876 89999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHH
Q 024536          214 DRAVHSAPDDCHVLASYARF  233 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~l  233 (266)
                      +++++++|+++........+
T Consensus       110 ~~al~~~p~~~~~~~~~~~~  129 (142)
T 2xcb_A          110 YSARALAAAQPAHEALAARA  129 (142)
T ss_dssp             HHHHHHHHTCGGGHHHHHHH
T ss_pred             HHHHHhCCCCcchHHHHHHH
Confidence            99999999987665444433

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.62  E-value=3e-14  Score=106.17  Aligned_cols=103  Identities=19%  Similarity=0.328  Sum_probs=96.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+.+|+++++.+|+++.++.++|.++. ..|++++|+.+|++++.++|.++.++.++|.++.. .+++++|+.+|
T Consensus        23 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~  100 (125)
T 1na0_A           23 GDYDEAIEYYQKALELDPNNAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAIEYY  100 (125)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hcCHHHHHHHH
Confidence            68999999999999999999999999999876 58999999999999999999999999999998876 89999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcC
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAG  238 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G  238 (266)
                      ++++.++|+++.++..++.++...|
T Consensus       101 ~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A          101 QKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            9999999999999999999887654

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.62  E-value=7.8e-15  Score=109.98  Aligned_cols=112  Identities=18%  Similarity=0.290  Sum_probs=105.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+.+|+++++.+|+++.++.++|.++. ..+++++|..+|++++..+|.++.++.++|.++.. .+++++|+.+|
T Consensus        15 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~   92 (136)
T 2fo7_A           15 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK-QGDYDEAIEYY   92 (136)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TTCHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCcchhHHHHHHHHHH-HhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH-hcCHHHHHHHH
Confidence            68999999999999999999999999998876 57999999999999999999999999999998866 89999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCcccccccc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGD  247 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~  247 (266)
                      ++++...|++..++..++.++...|++++|.+.-
T Consensus        93 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  126 (136)
T 2fo7_A           93 QKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY  126 (136)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHH
Confidence            9999999999999999999999999999998643

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.61  E-value=3.1e-15  Score=125.89  Aligned_cols=98  Identities=22%  Similarity=0.231  Sum_probs=86.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGD----------FVKAEEYCGRAILAKPGDGNVLSMYGDLIWINH  203 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd----------~e~A~~~~erAL~ldP~da~al~nla~ll~~~~  203 (266)
                      ..+++|++.|++|++++|+++.+|+|+|.++.. .++          +++|+.+|++||+++|+++.+|+++|.+|....
T Consensus        16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~-l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg   94 (158)
T 1zu2_A           16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLE-LSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA   94 (158)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-hcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence            578999999999999999999999999998763 343          579999999999999999999999999997632


Q ss_pred             ----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 024536          204 ----------KDAPRAKSYFDRAVHSAPDDCHVLASYAR  232 (266)
Q Consensus       204 ----------gd~deAi~~~ekAL~l~P~da~a~~~lA~  232 (266)
                                +++++|+.+|++||+++|++..++.++..
T Consensus        95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~  133 (158)
T 1zu2_A           95 FLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM  133 (158)
T ss_dssp             HHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             ccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence                      58999999999999999999887766543

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.61  E-value=3.6e-15  Score=120.27  Aligned_cols=109  Identities=14%  Similarity=0.096  Sum_probs=98.1

Q ss_pred             CCHHHHHHHHHHHHHH------------------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 024536          134 KESESMDVYYQEMIKA------------------YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMY  195 (266)
Q Consensus       134 ~~~eeA~~~y~rALel------------------~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nl  195 (266)
                      +++++|+.+|++||++                  +|.++.+|+|+|.++. ..|++++|+.+|++||.++|+++.+|+++
T Consensus        25 ~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~~~~~~A~~~~~~al~~~p~~~~a~~~~  103 (162)
T 3rkv_A           25 KDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYL-NIGDLHEAEETSSEVLKREETNEKALFRR  103 (162)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhcCCcchHHHHHH
Confidence            6899999999999999                  7888899999999886 58999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCccccc
Q 024536          196 GDLIWINHKDAPRAKSYFDRAVHSAPDDC-HVLASYARFLWDAGEEEDDD  244 (266)
Q Consensus       196 a~ll~~~~gd~deAi~~~ekAL~l~P~da-~a~~~lA~ll~~~G~~~eA~  244 (266)
                      |.++.. .|++++|+.+|++|+.++|+++ .+...+..+.....+..++.
T Consensus       104 g~~~~~-~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~  152 (162)
T 3rkv_A          104 AKARIA-AWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKADS  152 (162)
T ss_dssp             HHHHHH-TTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTSS
T ss_pred             HHHHHH-HhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            999877 8999999999999999999999 67778887777666555544

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.61  E-value=3.2e-15  Score=140.40  Aligned_cols=108  Identities=11%  Similarity=0.054  Sum_probs=101.2

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 024536          135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFD  214 (266)
Q Consensus       135 ~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~e  214 (266)
                      ++++|+.+|++||+++|+++.+|+++|.++. ..|++++|+.+|++||+++|+++.+|+++|.++.. .|++++|+.+|+
T Consensus       147 d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~-~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~-~g~~~eAl~~~~  224 (382)
T 2h6f_A          147 DLHEEMNYITAIIEEQPKNYQVWHHRRVLVE-WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE-FKLWDNELQYVD  224 (382)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHH-cCChHHHHHHHH
Confidence            4999999999999999999999999999886 57999999999999999999999999999999877 799999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHH-cCCccccc
Q 024536          215 RAVHSAPDDCHVLASYARFLWD-AGEEEDDD  244 (266)
Q Consensus       215 kAL~l~P~da~a~~~lA~ll~~-~G~~~eA~  244 (266)
                      +||+++|+++.+|+++|.++.. .+..++|+
T Consensus       225 ~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~  255 (382)
T 2h6f_A          225 QLLKEDVRNNSVWNQRYFVISNTTGYNDRAV  255 (382)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHhcCcchHHH
Confidence            9999999999999999999999 55557773

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.61  E-value=6e-15  Score=134.74  Aligned_cols=109  Identities=15%  Similarity=0.119  Sum_probs=104.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPED---------------ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDL  198 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~---------------~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~l  198 (266)
                      +++++|+.+|++|++++|++               +.+|+|+|.++. ..|++++|+.+|++||+++|+++.+++++|.+
T Consensus       161 g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~  239 (336)
T 1p5q_A          161 GKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL-KLQAFSAAIESCNKALELDSNNEKGLSRRGEA  239 (336)
T ss_dssp             TCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            79999999999999999999               699999999886 58999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536          199 IWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDD  244 (266)
Q Consensus       199 l~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~  244 (266)
                      +.. .|++++|+.+|++|++++|+++.++..++.++..+++.++|.
T Consensus       240 ~~~-~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~  284 (336)
T 1p5q_A          240 HLA-VNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE  284 (336)
T ss_dssp             HHH-TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHH-CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            877 899999999999999999999999999999999999999885

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.61  E-value=3.9e-15  Score=116.58  Aligned_cols=90  Identities=12%  Similarity=-0.031  Sum_probs=77.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+.+|+++++++|+++.+|+++|.++. ..|++++|+.+|++|++++|+++.++.++|.++.. .|++++|+.+|
T Consensus        31 g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~-~g~~~~A~~~~  108 (121)
T 1hxi_A           31 ANLAEAALAFEAVCQKEPEREEAWRSLGLTQA-ENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN-EHNANAALASL  108 (121)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            68999999999999999999999999999876 58999999999999999999999999999998876 78999999999


Q ss_pred             HHHHHhCCCCHH
Q 024536          214 DRAVHSAPDDCH  225 (266)
Q Consensus       214 ekAL~l~P~da~  225 (266)
                      +++++++|+++.
T Consensus       109 ~~al~~~P~~~~  120 (121)
T 1hxi_A          109 RAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHC-------
T ss_pred             HHHHHhCcCCCC
Confidence            999999998754

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.61  E-value=3.2e-14  Score=105.19  Aligned_cols=99  Identities=17%  Similarity=0.198  Sum_probs=93.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+.+|+++++.+|+++.++.++|.++. ..+++++|..+|++++..+|+++.++.++|.++.. .|++++|+.+|
T Consensus        18 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~   95 (118)
T 1elw_A           18 GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYA-KKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF-LNRFEEAKRTY   95 (118)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-hhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-HhhHHHHHHHH
Confidence            68999999999999999999999999999876 58999999999999999999999999999998876 89999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHH
Q 024536          214 DRAVHSAPDDCHVLASYARFL  234 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll  234 (266)
                      +++++++|+++.++..++.+.
T Consensus        96 ~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           96 EEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             HHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHHcCCCCHHHHHHHHHhh
Confidence            999999999999998888764

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.60  E-value=2.9e-14  Score=113.06  Aligned_cols=111  Identities=14%  Similarity=0.007  Sum_probs=104.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+.+|+++++.+|+++.++.++|.++. ..+++++|..+|++++..+|+++.++..+|.++.. .|++++|+.+|
T Consensus        56 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~  133 (186)
T 3as5_A           56 GAVDRGTELLERSLADAPDNVKVATVLGLTYV-QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDN-LGRFDEAIDSF  133 (186)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHH-cCcHHHHHHHH
Confidence            68999999999999999999999999999876 57999999999999999999999999999998876 89999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      ++++..+|+++.++..+|.++...|++++|.+.
T Consensus       134 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  166 (186)
T 3as5_A          134 KIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH  166 (186)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence            999999999999999999999999999999854

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.59  E-value=1.4e-14  Score=120.47  Aligned_cols=109  Identities=17%  Similarity=0.159  Sum_probs=101.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCCH----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDA----------------LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGD  197 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~----------------~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~  197 (266)
                      +++++|+.+|++++++.|.++                .++.++|.++. ..+++++|+.+|++|+.++|+++.+++++|.
T Consensus        52 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~  130 (198)
T 2fbn_A           52 NEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYN-KNKDYPKAIDHASKVLKIDKNNVKALYKLGV  130 (198)
T ss_dssp             TCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            689999999999999999998                89999999886 5899999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536          198 LIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDD  244 (266)
Q Consensus       198 ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~  244 (266)
                      ++.. .+++++|+.+|++|+.++|++..++..++.++...++.+++.
T Consensus       131 ~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~  176 (198)
T 2fbn_A          131 ANMY-FGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD  176 (198)
T ss_dssp             HHHH-HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHH-cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            9876 799999999999999999999999999999999998888877

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.59  E-value=2.5e-15  Score=126.65  Aligned_cols=105  Identities=14%  Similarity=0.124  Sum_probs=99.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHHcCCH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG-------NVLSMYGDLIWINHKDA  206 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da-------~al~nla~ll~~~~gd~  206 (266)
                      +++++|+.+|+++++.+|+++.++.++|.++. ..|++++|+.+|+++++++|+++       .++.++|.++.. .|++
T Consensus        56 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~-~~~~  133 (228)
T 4i17_A           56 KKYKEAADYFDIAIKKNYNLANAYIGKSAAYR-DMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQ-AGNI  133 (228)
T ss_dssp             TCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH-TTCH
T ss_pred             hcHHHHHHHHHHHHHhCcchHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHH-hccH
Confidence            68999999999999999999999999999886 68999999999999999999999       669999998876 8999


Q ss_pred             HHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCc
Q 024536          207 PRAKSYFDRAVHSAPD--DCHVLASYARFLWDAGEE  240 (266)
Q Consensus       207 deAi~~~ekAL~l~P~--da~a~~~lA~ll~~~G~~  240 (266)
                      ++|+.+|++|++++|+  ++.++.++|.++...|+.
T Consensus       134 ~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~  169 (228)
T 4i17_A          134 EKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGAD  169 (228)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHH
Confidence            9999999999999999  999999999999999887

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.58  E-value=1.8e-14  Score=138.34  Aligned_cols=113  Identities=17%  Similarity=0.083  Sum_probs=103.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+++|++|++++|+++.+|+++|.++. ..+++++|+.+|++|++++|+++.+++++|.++.. .|++++|+.+|
T Consensus        20 g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~-~g~~~eA~~~~   97 (477)
T 1wao_1           20 KDYENAIKFYSQAIELNPSNAIYYGNRSLAYL-RTECYGYALGDATRAIELDKKYIKGYYRRAASNMA-LGKFRAALRDY   97 (477)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH-HTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            79999999999999999999999999999886 58999999999999999999999999999999877 79999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHH--HHHcCCccccccccc
Q 024536          214 DRAVHSAPDDCHVLASYARF--LWDAGEEEDDDDGDD  248 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~l--l~~~G~~~eA~~~~~  248 (266)
                      ++|++++|+++.++..++.+  +...+++++|++..+
T Consensus        98 ~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           98 ETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            99999999999999999988  888999999997644

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.58  E-value=1.8e-14  Score=128.79  Aligned_cols=111  Identities=14%  Similarity=0.172  Sum_probs=106.2

Q ss_pred             CCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPE--DALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS  211 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~--~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~  211 (266)
                      +++++|+.+|+++++++|+  ++.+++++|.++. ..|++++|+.+|+++++++|+++.+|.++|.++.. .|++++|+.
T Consensus       191 g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~  268 (365)
T 4eqf_A          191 SVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH-LSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLAN-GDRSEEAVE  268 (365)
T ss_dssp             HHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHH
Confidence            7899999999999999999  9999999999886 58999999999999999999999999999999876 899999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536          212 YFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       212 ~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      +|+++++++|+++.++.++|.++...|++++|++.
T Consensus       269 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  303 (365)
T 4eqf_A          269 AYTRALEIQPGFIRSRYNLGISCINLGAYREAVSN  303 (365)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred             HHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHH
Confidence            99999999999999999999999999999999954

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.58  E-value=1.7e-14  Score=111.46  Aligned_cols=102  Identities=15%  Similarity=0.038  Sum_probs=84.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+.+|+++++++|+++.+++++|.++. ..+++++|+.+|++|+.++|+++.+++++|.++.. .|++++|+.+|
T Consensus        23 ~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~~~A~~~~  100 (137)
T 3q49_B           23 RKYPEAAACYGRAITRNPLVAVYYTNRALCYL-KMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE-MESYDEAIANL  100 (137)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH-HhhHHHHHHHH
Confidence            67888999999999999999989999888776 57889999999999999999999888888888766 78899999999


Q ss_pred             HHHHHhCCC-----CHHHHHHHHHHHHHc
Q 024536          214 DRAVHSAPD-----DCHVLASYARFLWDA  237 (266)
Q Consensus       214 ekAL~l~P~-----da~a~~~lA~ll~~~  237 (266)
                      ++++.++|+     +..+...+..+....
T Consensus       101 ~~a~~~~p~~~~~~~~~~~~~l~~~~~~~  129 (137)
T 3q49_B          101 QRAYSLAKEQRLNFGDDIPSALRIAKKKR  129 (137)
T ss_dssp             HHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHChhHHHHHHHHHHHHHHHHHHHH
Confidence            999998888     666666666554433

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.57  E-value=3.4e-14  Score=111.90  Aligned_cols=94  Identities=19%  Similarity=0.285  Sum_probs=80.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHHcCCH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG-------NVLSMYGDLIWINHKDA  206 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da-------~al~nla~ll~~~~gd~  206 (266)
                      +++++|+.+|++||+++|+++.+|+|+|.++. ..|++++|+.+|++||+++|++.       .++.++|.++.. .+++
T Consensus        22 ~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~-~~~~   99 (127)
T 4gcn_A           22 KDFEKAHVHYDKAIELDPSNITFYNNKAAVYF-EEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQK-QNDL   99 (127)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH-TTCH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHH-HhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHH-cCCH
Confidence            68999999999999999999999999998876 58999999999999999988763       578888888765 7999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHH
Q 024536          207 PRAKSYFDRAVHSAPDDCHVLASY  230 (266)
Q Consensus       207 deAi~~~ekAL~l~P~da~a~~~l  230 (266)
                      ++|+.+|++|+...|+ +.....+
T Consensus       100 ~~A~~~~~kal~~~~~-~~~~~~l  122 (127)
T 4gcn_A          100 SLAVQWFHRSLSEFRD-PELVKKV  122 (127)
T ss_dssp             HHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred             HHHHHHHHHHHhhCcC-HHHHHHH
Confidence            9999999999999885 5554443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.57  E-value=6.3e-15  Score=147.03  Aligned_cols=117  Identities=9%  Similarity=-0.006  Sum_probs=108.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+++|+++++++|+++.+|+++|.++. ..|++++|+++|++|++++|+++.+++++|.++.. .|++++ +.+|
T Consensus       447 g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~-~g~~~~-~~~~  523 (681)
T 2pzi_A          447 GDVAKATRKLDDLAERVGWRWRLVWYRAVAEL-LTGDYDSATKHFTEVLDTFPGELAPKLALAATAEL-AGNTDE-HKFY  523 (681)
T ss_dssp             TCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH-HTCCCT-TCHH
T ss_pred             CCHHHHHHHHHHHhccCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-cCChHH-HHHH
Confidence            78999999999999999999999999999886 58999999999999999999999999999999876 799999 9999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCcccccccccccccC
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDDQETCA  253 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~~~~~~  253 (266)
                      ++|++++|+++.+++++|.++...|++++|++.-+..-..
T Consensus       524 ~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l  563 (681)
T 2pzi_A          524 QTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPT  563 (681)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT
T ss_pred             HHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhccc
Confidence            9999999999999999999999999999999655444333

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.56  E-value=4.2e-14  Score=118.03  Aligned_cols=110  Identities=13%  Similarity=0.041  Sum_probs=68.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+.+|+++++.+|.++.++.++|.++. ..|++++|+.+|++++..+|+++.++..+|.++.. .|++++|+.+|
T Consensus       105 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~  182 (243)
T 2q7f_A          105 EMYKEAKDMFEKALRAGMENGDLFYMLGTVLV-KLEQPKLALPYLQRAVELNENDTEARFQFGMCLAN-EGMLDEALSQF  182 (243)
T ss_dssp             TCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH-HTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCCHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            35566666666666666666666666665554 35666666666666666666666666666665544 45666666666


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCcccccc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDD  245 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~  245 (266)
                      ++++..+|+++.++..+|.++...|++++|++
T Consensus       183 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  214 (243)
T 2q7f_A          183 AAVTEQDPGHADAFYNAGVTYAYKENREKALE  214 (243)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHH
T ss_pred             HHHHHhCcccHHHHHHHHHHHHHccCHHHHHH
Confidence            66666666666666666666666666666654

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=5.7e-14  Score=108.75  Aligned_cols=100  Identities=17%  Similarity=0.069  Sum_probs=93.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPED---ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAK  210 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~---~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi  210 (266)
                      +++++|+.+|+++++++|++   +.++.++|.++. ..+++++|+.+|++++.++|+++.+++++|.++.. .+++++|+
T Consensus        42 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~  119 (148)
T 2dba_A           42 GDYGGALAAYTQALGLDATPQDQAVLHRNRAACHL-KLEDYDKAETEASKAIEKDGGDVKALYRRSQALEK-LGRLDQAV  119 (148)
T ss_dssp             TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH-HTCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHH-HHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHH-cCCHHHHH
Confidence            78999999999999999998   899999999876 58999999999999999999999999999998877 79999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHH
Q 024536          211 SYFDRAVHSAPDDCHVLASYARFLW  235 (266)
Q Consensus       211 ~~~ekAL~l~P~da~a~~~lA~ll~  235 (266)
                      .+|+++++++|++..++..++.+..
T Consensus       120 ~~~~~al~~~p~~~~~~~~l~~~~~  144 (148)
T 2dba_A          120 LDLQRCVSLEPKNKVFQEALRNISG  144 (148)
T ss_dssp             HHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHh
Confidence            9999999999999999988877643

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.55  E-value=2.5e-14  Score=129.25  Aligned_cols=110  Identities=17%  Similarity=0.177  Sum_probs=58.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+.+|+++++++|+++.++.++|.++. ..|++++|+.+|+++++++|+++.++.+++.++.. .|++++|+.+|
T Consensus       251 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~  328 (388)
T 1w3b_A          251 GLIDLAIDTYRRAIELQPHFPDAYCNLANALK-EKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE-QGNIEEAVRLY  328 (388)
T ss_dssp             TCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            34555555555555555555555555555443 34555555555555555555555555555554433 45555555555


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCcccccc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDD  245 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~  245 (266)
                      +++++++|+++.++..++.++...|++++|++
T Consensus       329 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~  360 (388)
T 1w3b_A          329 RKALEVFPEFAAAHSNLASVLQQQGKLQEALM  360 (388)
T ss_dssp             HHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHH
T ss_pred             HHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence            55555555555555555555555555555554

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.55  E-value=1.2e-13  Score=115.25  Aligned_cols=111  Identities=16%  Similarity=0.239  Sum_probs=104.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+.+|+++++.+|+++.++.++|.++. ..|++++|+.+|++++..+|+++.++..+|.++.. .|++++|+.+|
T Consensus        71 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~  148 (243)
T 2q7f_A           71 NELERALAFYDKALELDSSAATAYYGAGNVYV-VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVK-LEQPKLALPYL  148 (243)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH-TSCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hccHHHHHHHH
Confidence            68999999999999999999999999999876 58999999999999999999999999999998876 89999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      ++++.++|+++.++..+|.++...|++++|++.
T Consensus       149 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  181 (243)
T 2q7f_A          149 QRAVELNENDTEARFQFGMCLANEGMLDEALSQ  181 (243)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred             HHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence            999999999999999999999999999999854

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.55  E-value=3.6e-14  Score=128.18  Aligned_cols=113  Identities=17%  Similarity=0.148  Sum_probs=81.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+..|+++++++|+++.++.++|.++. ..|++++|+.+|+++++++|+++.++.++|.++.. .|++++|+.+|
T Consensus       217 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~  294 (388)
T 1w3b_A          217 RIFDRAVAAYLRALSLSPNHAVVHGNLACVYY-EQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKE-KGSVAEAEDCY  294 (388)
T ss_dssp             TCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHH-HSCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            45566777777777777777777777776655 46777777777777777777777777777776655 57777777777


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCccccccccc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDD  248 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~  248 (266)
                      +++++++|+++.++..++.++...|++++|++.-+
T Consensus       295 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  329 (388)
T 1w3b_A          295 NTALRLCPTHADSLNNLANIKREQGNIEEAVRLYR  329 (388)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            77777777777777777777777777777775433

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.55  E-value=2e-13  Score=104.26  Aligned_cols=104  Identities=12%  Similarity=0.069  Sum_probs=93.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHH
Q 024536          134 KESESMDVYYQEMIKAYPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD---GNVLSMYGDLIWINHKDAP  207 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~---~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d---a~al~nla~ll~~~~gd~d  207 (266)
                      +++++|+.+|+++++.+|+++   .+++++|.++. ..|++++|+.+|++++..+|++   +.+++++|.++.. .|+++
T Consensus        16 ~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~-~g~~~   93 (129)
T 2xev_A           16 GKYDDASQLFLSFLELYPNGVYTPNALYWLGESYY-ATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYG-EGKNT   93 (129)
T ss_dssp             TCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH-TTCHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH-cCCHH
Confidence            689999999999999999999   89999999886 5899999999999999999999   8999999999876 89999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 024536          208 RAKSYFDRAVHSAPDDCHVLASYARFLWDAGE  239 (266)
Q Consensus       208 eAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~  239 (266)
                      +|+.+|++++...|+++.+......+....++
T Consensus        94 ~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~~  125 (129)
T 2xev_A           94 EAQQTLQQVATQYPGSDAARVAQERLQSIRLG  125 (129)
T ss_dssp             HHHHHHHHHHHHSTTSHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHCCCChHHHHHHHHHHHHHhh
Confidence            99999999999999999887777665554443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.55  E-value=3.9e-14  Score=112.27  Aligned_cols=111  Identities=14%  Similarity=0.074  Sum_probs=105.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+.+|+++++.+|.++.++..+|.++. ..|++++|..+|++++..+|+++.++.++|.++.. .+++++|+.+|
T Consensus        22 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~   99 (186)
T 3as5_A           22 GRYSQAVMLLEQVYDADAFDVDVALHLGIAYV-KTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQ-VQKYDLAVPLL   99 (186)
T ss_dssp             TCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCccChHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hcCHHHHHHHH
Confidence            68999999999999999999999999999876 58999999999999999999999999999998876 79999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      ++++..+|+++.++..+|.++...|++++|++.
T Consensus       100 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~  132 (186)
T 3as5_A          100 IKVAEANPINFNVRFRLGVALDNLGRFDEAIDS  132 (186)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHH
Confidence            999999999999999999999999999999864

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.54  E-value=1e-14  Score=123.97  Aligned_cols=111  Identities=15%  Similarity=0.128  Sum_probs=88.2

Q ss_pred             CCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 024536          134 KESESMDVYYQEMIKA----YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRA  209 (266)
Q Consensus       134 ~~~eeA~~~y~rALel----~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deA  209 (266)
                      +++++|+.+|+++++.    +|.++.+++++|.++. ..|++++|+.+|++|+.++|+++.++.++|.++.. .|++++|
T Consensus        19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~~~~~~A   96 (275)
T 1xnf_A           19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYD-SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ-AGNFDAA   96 (275)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TTCHHHH
T ss_pred             chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHH-HcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-ccCHHHH
Confidence            5778888888888887    3456677888887765 47888888888888888888888888888877765 6788888


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536          210 KSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       210 i~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      +.+|++|++++|+++.++..+|.++...|++++|++.
T Consensus        97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~  133 (275)
T 1xnf_A           97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDD  133 (275)
T ss_dssp             HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHH
Confidence            8888888888888888888888888888888888754

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.54  E-value=6.2e-14  Score=117.41  Aligned_cols=111  Identities=17%  Similarity=0.099  Sum_probs=101.2

Q ss_pred             CCHHHHHHHHHHHHH--------------------------HCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 024536          134 KESESMDVYYQEMIK--------------------------AYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG  187 (266)
Q Consensus       134 ~~~eeA~~~y~rALe--------------------------l~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~  187 (266)
                      +++++|+.+|+++++                          .+|.++.++.++|.++. ..|++++|+.+|++++.++|.
T Consensus        93 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~~~  171 (258)
T 3uq3_A           93 GDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYF-TKSDWPNAVKAYTEMIKRAPE  171 (258)
T ss_dssp             TCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTT
T ss_pred             ccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCcc
Confidence            567777777777777                          77888899999999886 589999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536          188 DGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       188 da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      ++.++.++|.++.. .|++++|+.+|+++++++|+++.++..+|.++...|++++|.+.
T Consensus       172 ~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  229 (258)
T 3uq3_A          172 DARGYSNRAAALAK-LMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALET  229 (258)
T ss_dssp             CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            99999999998876 89999999999999999999999999999999999999999854

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.54  E-value=3e-14  Score=137.23  Aligned_cols=111  Identities=13%  Similarity=0.066  Sum_probs=100.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+++|+++++++|+++.+++++|.++. ..|++++|+.+|++|++++|+++.++.++|.++.. .|++++|+.+|
T Consensus        37 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~  114 (568)
T 2vsy_A           37 GDTTAGEMAVQRGLALHPGHPEAVARLGRVRW-TQQRHAEAAVLLQQASDAAPEHPGIALWLGHALED-AGQAEAAAAAY  114 (568)
T ss_dssp             TCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            68899999999999999999999999998876 58999999999999999999999999999988876 78999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHc---CCccccccc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDA---GEEEDDDDG  246 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~---G~~~eA~~~  246 (266)
                      ++|++++|+++.++.+++.++...   |++++|++.
T Consensus       115 ~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~  150 (568)
T 2vsy_A          115 TRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQ  150 (568)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHH
Confidence            999999999999999999999999   888888853

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.53  E-value=1.8e-14  Score=138.81  Aligned_cols=111  Identities=18%  Similarity=0.244  Sum_probs=89.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+++|+++++++|+++.+|+++|.++. ..|++++|+++|++|++++|+++.++.++|.++.. .|++++|+.+|
T Consensus         3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~   80 (568)
T 2vsy_A            3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAEL-GMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWT-QQRHAEAAVLL   80 (568)
T ss_dssp             ------------------CCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence            57899999999999999999999999999886 57999999999999999999999999999999876 89999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      ++|++++|+++.++.++|.++...|++++|++.
T Consensus        81 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  113 (568)
T 2vsy_A           81 QQASDAAPEHPGIALWLGHALEDAGQAEAAAAA  113 (568)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            999999999999999999999999999999964

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.53  E-value=5.9e-14  Score=108.06  Aligned_cols=94  Identities=15%  Similarity=0.021  Sum_probs=87.7

Q ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 024536          151 PEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASY  230 (266)
Q Consensus       151 P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~l  230 (266)
                      |..+..|.++|..++ ..|++++|+.+|++||.++|+++.++.++|.++.. .|++++|+.+|++|++++|+++.++..+
T Consensus         1 p~~a~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l   78 (126)
T 3upv_A            1 SMKAEEARLEGKEYF-TKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK-LMSFPEAIADCNKAIEKDPNFVRAYIRK   78 (126)
T ss_dssp             CHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CchHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            456788999998876 58999999999999999999999999999999877 8999999999999999999999999999


Q ss_pred             HHHHHHcCCccccccc
Q 024536          231 ARFLWDAGEEEDDDDG  246 (266)
Q Consensus       231 A~ll~~~G~~~eA~~~  246 (266)
                      |.++...|++++|++.
T Consensus        79 g~~~~~~~~~~~A~~~   94 (126)
T 3upv_A           79 ATAQIAVKEYASALET   94 (126)
T ss_dssp             HHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHhCHHHHHHH
Confidence            9999999999999854

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.53  E-value=1e-13  Score=122.92  Aligned_cols=111  Identities=14%  Similarity=0.171  Sum_probs=88.8

Q ss_pred             CCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPE--DALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS  211 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~--~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~  211 (266)
                      +++++|+.+|+++++++|+  ++.++.++|.++. ..|++++|+.+|++++.++|+++.++.++|.++.. .|++++|+.
T Consensus       195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~g~~~~A~~  272 (368)
T 1fch_A          195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN-LSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN-GNQSEEAVA  272 (368)
T ss_dssp             HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-cCCHHHHHH
Confidence            6778888888888888888  7788888887765 47888888888888888888888888888877765 678888888


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536          212 YFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       212 ~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      +|++++.++|+++.++..+|.++...|++++|++.
T Consensus       273 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  307 (368)
T 1fch_A          273 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEH  307 (368)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence            88888888888888888888888888888888743

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.53  E-value=3e-14  Score=135.57  Aligned_cols=109  Identities=16%  Similarity=0.191  Sum_probs=99.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPED---------------ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDL  198 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~---------------~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~l  198 (266)
                      +++++|+.+|++||+++|.+               ..+|+|+|.++. ..+++++|+.+|++||+++|+++.+|+++|.+
T Consensus       282 g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a  360 (457)
T 1kt0_A          282 GKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL-KLREYTKAVECCDKALGLDSANEKGLYRRGEA  360 (457)
T ss_dssp             TCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence            79999999999999999999               799999999886 58999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536          199 IWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDD  244 (266)
Q Consensus       199 l~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~  244 (266)
                      +.. .+++++|+.+|++|++++|++..++..++.++...++.++|+
T Consensus       361 ~~~-~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~  405 (457)
T 1kt0_A          361 QLL-MNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD  405 (457)
T ss_dssp             HHH-TTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHH-ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            877 899999999999999999999999999999999999888776

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.53  E-value=9.6e-14  Score=117.26  Aligned_cols=112  Identities=21%  Similarity=0.237  Sum_probs=100.8

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAIL--AKPGDGNVLSMYGDLIWINHKDAPRAKS  211 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~--ldP~da~al~nla~ll~~~~gd~deAi~  211 (266)
                      +++++|+.+|+++++.+|+++.++.++|.++. ..|++++|+.+|++++.  .+|.++.++.++|.++.. .|++++|+.
T Consensus        85 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~  162 (252)
T 2ho1_A           85 MEPKLADEEYRKALASDSRNARVLNNYGGFLY-EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQ-MKKPAQAKE  162 (252)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH-HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHH-cCCHHHHHH
Confidence            58899999999999999999999999998876 58999999999999999  888899999999988876 789999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccccc
Q 024536          212 YFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGD  247 (266)
Q Consensus       212 ~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~  247 (266)
                      +|+++++++|+++.++..+|.++...|++++|++.-
T Consensus       163 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  198 (252)
T 2ho1_A          163 YFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYY  198 (252)
T ss_dssp             HHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            999999999999999999999999999999998643

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.53  E-value=1.7e-14  Score=121.44  Aligned_cols=98  Identities=13%  Similarity=0.050  Sum_probs=88.2

Q ss_pred             CCHHHHHHHHHHHHHHCCC-------CHH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHHH--
Q 024536          134 KESESMDVYYQEMIKAYPE-------DAL-----VLANYAKFLKEIRGDFVKAEEYCGRAILA-------KPGDGNVL--  192 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~-------~~~-----al~nlA~~L~~~~gd~e~A~~~~erAL~l-------dP~da~al--  192 (266)
                      +++++|+..|++||+++|+       +..     +|.|+|.++. ..|++++|+.+|++||++       +|+++.+|  
T Consensus        25 g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~-~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~  103 (159)
T 2hr2_A           25 GEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA-GLRSFDEALHSADKALHYFNRRGELNQDEGKLWIS  103 (159)
T ss_dssp             TCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHH
Confidence            6899999999999999999       444     9999999886 589999999999999999       99999999  


Q ss_pred             --HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 024536          193 --SMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARF  233 (266)
Q Consensus       193 --~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~l  233 (266)
                        ++.|.++.. .|++++|+.+|++|++++|++..+...+..+
T Consensus       104 ~~~~rG~aL~~-lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~  145 (159)
T 2hr2_A          104 AVYSRALALDG-LGRGAEAMPEFKKVVEMIEERKGETPGKERM  145 (159)
T ss_dssp             HHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred             HHHhHHHHHHH-CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence              999999876 7999999999999999999987765544443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.52  E-value=1e-13  Score=122.91  Aligned_cols=90  Identities=16%  Similarity=0.043  Sum_probs=84.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+.+|+++++++|+++.+++++|.++. ..|++++|+.+|++++.++|+++.++.++|.++.. .|++++|+.+|
T Consensus       231 g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~  308 (368)
T 1fch_A          231 GEYDKAVDCFTAALSVRPNDYLLWNKLGATLA-NGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN-LGAHREAVEHF  308 (368)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence            79999999999999999999999999999886 58999999999999999999999999999999877 79999999999


Q ss_pred             HHHHHhCCCCHH
Q 024536          214 DRAVHSAPDDCH  225 (266)
Q Consensus       214 ekAL~l~P~da~  225 (266)
                      ++++.++|++..
T Consensus       309 ~~al~~~~~~~~  320 (368)
T 1fch_A          309 LEALNMQRKSRG  320 (368)
T ss_dssp             HHHHHHHHTC--
T ss_pred             HHHHHhCCCCCC
Confidence            999999998743

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.52  E-value=6.2e-14  Score=116.04  Aligned_cols=107  Identities=15%  Similarity=0.071  Sum_probs=99.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+.+|++++  +| ++.+++++|.++. ..|++++|+.+|++|+.++|+++.++.++|.++.. .|++++|+.+|
T Consensus        20 ~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~-~~~~~~A~~~~   94 (213)
T 1hh8_A           20 KDWKGALDAFSAVQ--DP-HSRICFNIGCMYT-ILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ-TEKYDLAIKDL   94 (213)
T ss_dssp             TCHHHHHHHHHTSS--SC-CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHc--CC-ChHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-cccHHHHHHHH
Confidence            68999999999996  44 7899999999886 58999999999999999999999999999999877 89999999999


Q ss_pred             HHHHHhCCCCH----------------HHHHHHHHHHHHcCCcccccc
Q 024536          214 DRAVHSAPDDC----------------HVLASYARFLWDAGEEEDDDD  245 (266)
Q Consensus       214 ekAL~l~P~da----------------~a~~~lA~ll~~~G~~~eA~~  245 (266)
                      ++++++.|++.                .++.++|.++...|++++|++
T Consensus        95 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  142 (213)
T 1hh8_A           95 KEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEE  142 (213)
T ss_dssp             HHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHH
Confidence            99999988877                999999999999999999985

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.52  E-value=7.4e-15  Score=120.45  Aligned_cols=112  Identities=15%  Similarity=0.087  Sum_probs=89.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+.+|+++++.+|+++.+++++|.++. ..|++++|+.+|++++..+| ++..+..++.+......+..+|+.+|
T Consensus        20 g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~-~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~   97 (176)
T 2r5s_A           20 GEHAQALNVIQTLSDELQSRGDVKLAKADCLL-ETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRL   97 (176)
T ss_dssp             TCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHH-HTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHH
Confidence            68999999999999999999999999999876 58999999988888888888 77766655544332223344578888


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCcccccccc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGD  247 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~  247 (266)
                      +++++++|+++.++..+|.++...|++++|++.-
T Consensus        98 ~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~  131 (176)
T 2r5s_A           98 EQELAANPDNFELACELAVQYNQVGRDEEALELL  131 (176)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence            8888888888888888888888888888888543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.52  E-value=1.8e-13  Score=116.26  Aligned_cols=109  Identities=12%  Similarity=0.044  Sum_probs=95.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+.+|+++++++|+++.++.++|.++. ..|++++|..+|++|+.++|+++.++.++|.++.. .|++++|+.+|
T Consensus        57 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~  134 (275)
T 1xnf_A           57 GLRALARNDFSQALAIRPDMPEVFNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-GGRDKLAQDDL  134 (275)
T ss_dssp             TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHH-hccHHHHHHHH
Confidence            68999999999999999999999999999886 58999999999999999999999999999999877 89999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCcccccc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDD  245 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~  245 (266)
                      +++++++|++..+...++. +...|++++|++
T Consensus       135 ~~a~~~~~~~~~~~~~~~~-~~~~~~~~~A~~  165 (275)
T 1xnf_A          135 LAFYQDDPNDPFRSLWLYL-AEQKLDEKQAKE  165 (275)
T ss_dssp             HHHHHHCTTCHHHHHHHHH-HHHHHCHHHHHH
T ss_pred             HHHHHhCCCChHHHHHHHH-HHHhcCHHHHHH
Confidence            9999999999755544443 344466666663

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.52  E-value=2.4e-14  Score=136.53  Aligned_cols=110  Identities=8%  Similarity=-0.164  Sum_probs=104.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIR--------GDFVKAEEYCGRAILAKP---GDGNVLSMYGDLIWIN  202 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~--------gd~e~A~~~~erAL~ldP---~da~al~nla~ll~~~  202 (266)
                      +++++|+.+|++|++++|+++.+|+++|.++. ..        +++++|+.+|++|++++|   +++.+|+++|.++.. 
T Consensus       193 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~-  270 (474)
T 4abn_A          193 RHVMDSVRQAKLAVQMDVLDGRSWYILGNAYL-SLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKY-  270 (474)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHH-
T ss_pred             hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHH-
Confidence            68999999999999999999999999999886 46        889999999999999999   999999999999877 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccc
Q 024536          203 HKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDD  245 (266)
Q Consensus       203 ~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~  245 (266)
                      .|++++|+.+|++|++++|+++.++..++.++...+++++|++
T Consensus       271 ~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~  313 (474)
T 4abn_A          271 EESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLE  313 (474)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999984

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.52  E-value=9.3e-14  Score=120.51  Aligned_cols=113  Identities=17%  Similarity=0.184  Sum_probs=79.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHHcC
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAK---------PGDGNVLSMYGDLIWINHK  204 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ld---------P~da~al~nla~ll~~~~g  204 (266)
                      +++++|+.+|+++++.+|+++.++.++|.++. ..|++++|+.+|++++.+.         |.++.++.++|.++.. .|
T Consensus       173 ~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g  250 (330)
T 3hym_B          173 NNSKLAERFFSQALSIAPEDPFVMHEVGVVAF-QNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK-LK  250 (330)
T ss_dssp             TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH-TT
T ss_pred             hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHH-hc
Confidence            46677777777777777777777777776654 4677777777777777765         5566677777766654 67


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccccc
Q 024536          205 DAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDD  248 (266)
Q Consensus       205 d~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~  248 (266)
                      ++++|+.+|+++++++|+++.++..+|.++...|++++|++.-+
T Consensus       251 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  294 (330)
T 3hym_B          251 KYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFH  294 (330)
T ss_dssp             CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHH
Confidence            77777777777777777777777777777777777777775433

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.52  E-value=1.7e-13  Score=112.46  Aligned_cols=110  Identities=20%  Similarity=0.181  Sum_probs=65.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIR-GDFVKAEEYCGRAIL--AKPGDGNVLSMYGDLIWINHKDAPRAK  210 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~-gd~e~A~~~~erAL~--ldP~da~al~nla~ll~~~~gd~deAi  210 (266)
                      +++++|+.+|+++++.+|+++.++.++|.++. .. |++++|+.+|++++.  .+|.+..++.++|.++.. .|++++|+
T Consensus        56 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~  133 (225)
T 2vq2_A           56 KVNDKAQESFRQALSIKPDSAEINNNYGWFLC-GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAK-QGQFGLAE  133 (225)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHH-TTCHHHHH
T ss_pred             CChHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHH-cCCHHHHH
Confidence            35566666666666666666666666665554 35 566666666666666  445555566666655544 55666666


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccc
Q 024536          211 SYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDD  245 (266)
Q Consensus       211 ~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~  245 (266)
                      .+|++++..+|+++.++..+|.++...|++++|++
T Consensus       134 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  168 (225)
T 2vq2_A          134 AYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADY  168 (225)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHH
Confidence            66666666666666666666666666666666553

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.52  E-value=6.6e-14  Score=119.30  Aligned_cols=116  Identities=8%  Similarity=0.054  Sum_probs=102.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHcCCHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG----NVLSMYGDLIWINHKDAPRA  209 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da----~al~nla~ll~~~~gd~deA  209 (266)
                      +++++|+.+|+++++.+|+++.++.++|.++. ..|++++|+.+|++++. .|.++    .++.++|.++.. .|++++|
T Consensus        17 ~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~-~~~~~~A   93 (272)
T 3u4t_A           17 NNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYY-ELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMK-KGQDSLA   93 (272)
T ss_dssp             TCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHH-HTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHH-TTCHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHH-cccHHHH
Confidence            68999999999999999999999999999776 68999999999999999 44444    458999998876 8999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccccccccc
Q 024536          210 KSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDDQETC  252 (266)
Q Consensus       210 i~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~~~~~  252 (266)
                      +.+|+++++++|+++.++..+|.++...|++++|++.-+..-.
T Consensus        94 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  136 (272)
T 3u4t_A           94 IQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR  136 (272)
T ss_dssp             HHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC
T ss_pred             HHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999965444333

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.52  E-value=2.2e-13  Score=111.70  Aligned_cols=112  Identities=16%  Similarity=0.161  Sum_probs=104.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-CCHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINH-KDAPRAKSY  212 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~-gd~deAi~~  212 (266)
                      +++++|+.+|+++++.+|+++.++..+|.++. ..|++++|..+|++++.++|+++.++.++|.++.. . |++++|+.+
T Consensus        22 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~~A~~~   99 (225)
T 2vq2_A           22 QDYRQATASIEDALKSDPKNELAWLVRAEIYQ-YLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCG-RLNRPAESMAY   99 (225)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TTCCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhCccchHHHHHHHHHHH-HcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-hcCcHHHHHHH
Confidence            68999999999999999999999999999876 58999999999999999999999999999998866 8 999999999


Q ss_pred             HHHHHH--hCCCCHHHHHHHHHHHHHcCCcccccccc
Q 024536          213 FDRAVH--SAPDDCHVLASYARFLWDAGEEEDDDDGD  247 (266)
Q Consensus       213 ~ekAL~--l~P~da~a~~~lA~ll~~~G~~~eA~~~~  247 (266)
                      |++++.  ..|.+..++..+|.++...|++++|++.-
T Consensus       100 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  136 (225)
T 2vq2_A          100 FDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYL  136 (225)
T ss_dssp             HHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            999999  77777899999999999999999998643

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.51  E-value=1.2e-13  Score=122.85  Aligned_cols=109  Identities=8%  Similarity=-0.014  Sum_probs=76.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH--------------------------------
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRA--------------------------------  181 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erA--------------------------------  181 (266)
                      +++++|+.+|+++++++|+++.+++++|.++. ..|++++|+.+|+++                                
T Consensus       131 g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~-~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~  209 (287)
T 3qou_A          131 SNYTDALPLLXDAWQLSNQNGEIGLLLAETLI-ALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQ  209 (287)
T ss_dssp             TCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH-HTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCcchhHHHHHHHHHH-HCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHH
Confidence            78999999999999999999999999999876 578888877665555                                


Q ss_pred             --HHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCccccc
Q 024536          182 --ILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD--CHVLASYARFLWDAGEEEDDD  244 (266)
Q Consensus       182 --L~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~d--a~a~~~lA~ll~~~G~~~eA~  244 (266)
                        ++++|+++.+++++|.++.. .|++++|+.+|+++++++|++  +.++.+++.++...|+.++|+
T Consensus       210 ~al~~~P~~~~~~~~la~~l~~-~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~  275 (287)
T 3qou_A          210 QQVAENPEDAALATQLALQLHQ-VGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALA  275 (287)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHhcCCccHHHHHHHHHHHHH-cccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHH
Confidence              55555555555555555544 555555555555555555555  555555555555555555554

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.51  E-value=3.3e-14  Score=104.51  Aligned_cols=97  Identities=14%  Similarity=0.170  Sum_probs=74.8

Q ss_pred             CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHH
Q 024536          150 YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPD--DCHVL  227 (266)
Q Consensus       150 ~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~--da~a~  227 (266)
                      +|+++.+++++|.++. ..+++++|..+|++++.++|+++.++.++|.++.. .+++++|+.+|+++++++|+  +..++
T Consensus         2 ~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~   79 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQY-DAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYN-LERYEEAVDCYNYVINVIEDEYNKDVW   79 (112)
T ss_dssp             CCSSTTGGGGHHHHHH-SSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSCCTTCHHHH
T ss_pred             CCCcHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCcccchHHHH
Confidence            5777777777777665 46788888888888888888888888888877765 67788888888888888888  78888


Q ss_pred             HHHHHHHHHc-CCccccccccc
Q 024536          228 ASYARFLWDA-GEEEDDDDGDD  248 (266)
Q Consensus       228 ~~lA~ll~~~-G~~~eA~~~~~  248 (266)
                      ..+|.++... |++++|++.-+
T Consensus        80 ~~l~~~~~~~~~~~~~A~~~~~  101 (112)
T 2kck_A           80 AAKADALRYIEGKEVEAEIAEA  101 (112)
T ss_dssp             HHHHHHHTTCSSCSHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHH
Confidence            8888888888 88888775433

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.51  E-value=2.9e-14  Score=135.99  Aligned_cols=110  Identities=11%  Similarity=0.009  Sum_probs=103.7

Q ss_pred             CCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc---------
Q 024536          134 KES-ESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINH---------  203 (266)
Q Consensus       134 ~~~-eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~---------  203 (266)
                      +++ ++|+.+|++|++++|+++.+|+++|.++. ..|++++|+.+|++|++++|+ +.++.++|.++.. .         
T Consensus       116 g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~-~~~~~~~~~~  192 (474)
T 4abn_A          116 PDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYW-KKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQ-LQTDSGDEHS  192 (474)
T ss_dssp             SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTT-CCCSCHHHHH
T ss_pred             cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHH-hccCChhhhh
Confidence            578 99999999999999999999999999887 589999999999999999999 7999999998865 7         


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------CCccccccc
Q 024536          204 KDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDA--------GEEEDDDDG  246 (266)
Q Consensus       204 gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~--------G~~~eA~~~  246 (266)
                      +++++|+.+|++|++++|+++.++.++|.++...        |++++|++.
T Consensus       193 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~  243 (474)
T 4abn_A          193 RHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSA  243 (474)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHH
Confidence            8999999999999999999999999999999999        999999854

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.51  E-value=2e-13  Score=118.23  Aligned_cols=110  Identities=15%  Similarity=0.215  Sum_probs=77.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+.+|+++++.+|+++.++.++|.++. ..|++++|..+|++++..+|+++.++.++|.++.. .|++++|+.+|
T Consensus       152 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~  229 (327)
T 3cv0_A          152 NEYRECRTLLHAALEMNPNDAQLHASLGVLYN-LSNNYDSAAANLRRAVELRPDDAQLWNKLGATLAN-GNRPQEALDAY  229 (327)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            56677777777777777777777777776654 46777777777777777777777777777766655 66777777777


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCcccccc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDD  245 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~  245 (266)
                      +++++++|+++.++..+|.++...|++++|++
T Consensus       230 ~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  261 (327)
T 3cv0_A          230 NRALDINPGYVRVMYNMAVSYSNMSQYDLAAK  261 (327)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHhccHHHHHH
Confidence            77777777777777777777777777777664

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.51  E-value=1.1e-13  Score=123.61  Aligned_cols=113  Identities=17%  Similarity=-0.007  Sum_probs=104.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+.+|+++++++|+++.+|+++|.++. ..|++++|+.+|++|++++|+++.++.++|.++.. .|++++|+.+|
T Consensus       227 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~  304 (365)
T 4eqf_A          227 GEFNRAIDAFNAALTVRPEDYSLWNRLGATLA-NGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCIN-LGAYREAVSNF  304 (365)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH-CCCHHHHHHHH
Confidence            78999999999999999999999999999886 58999999999999999999999999999999877 79999999999


Q ss_pred             HHHHHhCCC------------CHHHHHHHHHHHHHcCCccccccccc
Q 024536          214 DRAVHSAPD------------DCHVLASYARFLWDAGEEEDDDDGDD  248 (266)
Q Consensus       214 ekAL~l~P~------------da~a~~~lA~ll~~~G~~~eA~~~~~  248 (266)
                      ++|++++|+            +..++..++.++...|+.+.+.+...
T Consensus       305 ~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  351 (365)
T 4eqf_A          305 LTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL  351 (365)
T ss_dssp             HHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred             HHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            999999998            36789999999999999998886533

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.51  E-value=2.3e-13  Score=102.38  Aligned_cols=103  Identities=17%  Similarity=0.224  Sum_probs=93.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHcCCH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD-------GNVLSMYGDLIWINHKDA  206 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d-------a~al~nla~ll~~~~gd~  206 (266)
                      +++++|+.+|+++++.+|.++.+++++|.++. ..+++++|..+|++++.++|++       +.+++++|.++.. .+++
T Consensus        18 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~   95 (131)
T 1elr_A           18 KDFDTALKHYDKAKELDPTNMTYITNQAAVYF-EKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFK-EEKY   95 (131)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH-TTCH
T ss_pred             cCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-HhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHH-hccH
Confidence            68999999999999999999999999999876 5899999999999999999988       9999999998876 8999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 024536          207 PRAKSYFDRAVHSAPDDCHVLASYARFLWDAGE  239 (266)
Q Consensus       207 deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~  239 (266)
                      ++|+.+|++++.+.| ++.++..++.++...++
T Consensus        96 ~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~  127 (131)
T 1elr_A           96 KDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE  127 (131)
T ss_dssp             HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence            999999999999999 68888888887766543

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.51  E-value=2.5e-13  Score=104.78  Aligned_cols=97  Identities=12%  Similarity=0.032  Sum_probs=89.4

Q ss_pred             HHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 024536          148 KAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVL  227 (266)
Q Consensus       148 el~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~  227 (266)
                      ..+|.++.++.++|..+. ..|++++|+.+|++++.++|+++.++.++|.++.. .+++++|+.+|++++.++|+++.++
T Consensus         3 ~~~~~~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~   80 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLF-VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQQPEQALADCRRALELDGQSVKAH   80 (137)
T ss_dssp             ---CCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CCccccHHHHHHHHHHHH-HhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCchhHHHH
Confidence            467889999999999886 58999999999999999999999999999999876 8999999999999999999999999


Q ss_pred             HHHHHHHHHcCCccccccc
Q 024536          228 ASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       228 ~~lA~ll~~~G~~~eA~~~  246 (266)
                      ..+|.++...|++++|++.
T Consensus        81 ~~l~~~~~~~~~~~~A~~~   99 (137)
T 3q49_B           81 FFLGQCQLEMESYDEAIAN   99 (137)
T ss_dssp             HHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHH
Confidence            9999999999999999853

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.50  E-value=2.5e-13  Score=117.65  Aligned_cols=104  Identities=13%  Similarity=0.002  Sum_probs=89.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+.+|+++++.+|+++.++.++|.++. ..|++++|..+|++++.++|+++.++.++|.++.. .|++++|+.+|
T Consensus       186 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~  263 (327)
T 3cv0_A          186 NNYDSAAANLRRAVELRPDDAQLWNKLGATLA-NGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSN-MSQYDLAAKQL  263 (327)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hccHHHHHHHH
Confidence            79999999999999999999999999999886 58999999999999999999999999999998876 89999999999


Q ss_pred             HHHHHhCCCCHHHHHH-----HHHHHHHcCC
Q 024536          214 DRAVHSAPDDCHVLAS-----YARFLWDAGE  239 (266)
Q Consensus       214 ekAL~l~P~da~a~~~-----lA~ll~~~G~  239 (266)
                      ++++.++|++......     ...++...+.
T Consensus       264 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~  294 (327)
T 3cv0_A          264 VRAIYMQVGGTTPTGEASREATRSMWDFFRM  294 (327)
T ss_dssp             HHHHHHHTTSCC-----CCTHHHHHHHHHHH
T ss_pred             HHHHHhCCccccccccchhhcCHHHHHHHHH
Confidence            9999999985433221     4455554443

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.50  E-value=5.2e-14  Score=131.08  Aligned_cols=111  Identities=16%  Similarity=0.146  Sum_probs=104.4

Q ss_pred             CCHHHHHHHHHHHHH----------------HCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 024536          134 KESESMDVYYQEMIK----------------AYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGD  197 (266)
Q Consensus       134 ~~~eeA~~~y~rALe----------------l~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~  197 (266)
                      +++++|+.+|++||+                ++|.++.+|+|+|.++. ..+++++|+.+|++||+++|+++.+++++|.
T Consensus       237 g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~  315 (370)
T 1ihg_A          237 QNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKL-KMSDWQGAVDSCLEALEIDPSNTKALYRRAQ  315 (370)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence            789999999999999                88889999999999886 6899999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536          198 LIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       198 ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      ++.. .+++++|+.+|++|++++|++..++..++.++..+++.+++.+.
T Consensus       316 ~~~~-~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          316 GWQG-LKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             HHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9877 89999999999999999999999999999999999988887743

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.50  E-value=1.3e-13  Score=116.40  Aligned_cols=112  Identities=16%  Similarity=0.172  Sum_probs=105.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+.+|+++++.+|+++.++.++|.++. ..|++++|+.+|++++..+|+++.++.++|.++.. .|++++|+.+|
T Consensus        51 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~  128 (252)
T 2ho1_A           51 GNTEQAKVPLRKALEIDPSSADAHAALAVVFQ-TEMEPKLADEEYRKALASDSRNARVLNNYGGFLYE-QKRYEEAYQRL  128 (252)
T ss_dssp             TCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             CChHHHHHHHHHHHhcCCChHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH-HhHHHHHHHHH
Confidence            57899999999999999999999999999876 58999999999999999999999999999998876 89999999999


Q ss_pred             HHHHH--hCCCCHHHHHHHHHHHHHcCCcccccccc
Q 024536          214 DRAVH--SAPDDCHVLASYARFLWDAGEEEDDDDGD  247 (266)
Q Consensus       214 ekAL~--l~P~da~a~~~lA~ll~~~G~~~eA~~~~  247 (266)
                      ++++.  ..|.++.++..+|.++...|++++|++.-
T Consensus       129 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  164 (252)
T 2ho1_A          129 LEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYF  164 (252)
T ss_dssp             HHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999  88999999999999999999999999653

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.50  E-value=1.3e-13  Score=111.21  Aligned_cols=95  Identities=13%  Similarity=0.078  Sum_probs=88.6

Q ss_pred             CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 024536          150 YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLAS  229 (266)
Q Consensus       150 ~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~  229 (266)
                      ++.++.+|+++|.+++ ..|++++|+.+|++||.++|+++.+|+++|.++.. .+++++|+.+|++|++++|+++.++..
T Consensus         7 ~~~~a~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~   84 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAM-ARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSA-SGQHEKAAEDAELATVVDPKYSKAWSR   84 (164)
T ss_dssp             CCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hhhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            4567788999998886 58999999999999999999999999999999877 899999999999999999999999999


Q ss_pred             HHHHHHHcCCccccccc
Q 024536          230 YARFLWDAGEEEDDDDG  246 (266)
Q Consensus       230 lA~ll~~~G~~~eA~~~  246 (266)
                      +|.++...|++++|++.
T Consensus        85 lg~~~~~~g~~~~A~~~  101 (164)
T 3sz7_A           85 LGLARFDMADYKGAKEA  101 (164)
T ss_dssp             HHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHH
Confidence            99999999999999853

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.50  E-value=2.1e-13  Score=103.80  Aligned_cols=101  Identities=15%  Similarity=0.142  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024536          137 ESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRA  216 (266)
Q Consensus       137 eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekA  216 (266)
                      ++|+.+|+++++.+|+++.+++++|.++. ..|++++|+.+|++|+.++|+++.+++++|.++.. .|++++|+.+|+++
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~a   79 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYA-EHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQG-QGDRAGARQAWESG   79 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHH
Confidence            36889999999999999999999999886 58999999999999999999999999999999877 79999999999999


Q ss_pred             HHhCC--CCHHHHHHHHHHHHHcCC
Q 024536          217 VHSAP--DDCHVLASYARFLWDAGE  239 (266)
Q Consensus       217 L~l~P--~da~a~~~lA~ll~~~G~  239 (266)
                      ++++|  .+..++..+..++...++
T Consensus        80 l~~~~~~~~~~~~~~l~~~l~~l~~  104 (115)
T 2kat_A           80 LAAAQSRGDQQVVKELQVFLRRLAR  104 (115)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHhccccccHHHHHHHHHHHHHhcc
Confidence            99998  456666677666665544

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.49  E-value=1.8e-13  Score=118.64  Aligned_cols=109  Identities=15%  Similarity=0.147  Sum_probs=58.1

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 024536          135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFD  214 (266)
Q Consensus       135 ~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~e  214 (266)
                      ++++|+.+|+++++++|+++.+|.++|.++. ..|++++|+.+|++++.++|++..++..+|.++.. .+++++|+.+|+
T Consensus       106 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~  183 (330)
T 3hym_B          106 KNEHARRYLSKATTLEKTYGPAWIAYGHSFA-VESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGL-TNNSKLAERFFS  183 (330)
T ss_dssp             CHHHHHHHHHHHHTTCTTCTHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHH-HhhHHHHHHHHH
Confidence            4555555555555555555555555555443 34555555555555555555555555555554443 455555555555


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCcccccc
Q 024536          215 RAVHSAPDDCHVLASYARFLWDAGEEEDDDD  245 (266)
Q Consensus       215 kAL~l~P~da~a~~~lA~ll~~~G~~~eA~~  245 (266)
                      +++.++|+++.++..+|.++...|++++|++
T Consensus       184 ~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~  214 (330)
T 3hym_B          184 QALSIAPEDPFVMHEVGVVAFQNGEWKTAEK  214 (330)
T ss_dssp             HHHTTCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHhCCCChHHHHHHHHHHHHcccHHHHHH
Confidence            5555555555555555555555555555553

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.49  E-value=9.9e-14  Score=138.38  Aligned_cols=111  Identities=12%  Similarity=-0.041  Sum_probs=104.4

Q ss_pred             CCCHHHHHHHHHHHH--------HHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 024536          133 GKESESMDVYYQEMI--------KAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHK  204 (266)
Q Consensus       133 ~~~~eeA~~~y~rAL--------el~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~g  204 (266)
                      .+++++|+++|++++        +.+|+++.+++++|.++. ..|++++|+.+|++|++++|+++.+|+++|.++.. .|
T Consensus       404 ~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g  481 (681)
T 2pzi_A          404 LSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALL-DLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL-TG  481 (681)
T ss_dssp             TCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HT
T ss_pred             ccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHH-hcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH-cC
Confidence            378999999999999        999999999999999886 58999999999999999999999999999999876 79


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536          205 DAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       205 d~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      ++++|+.+|++|++++|+++.++.++|.++...|++++ ++.
T Consensus       482 ~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~  522 (681)
T 2pzi_A          482 DYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKF  522 (681)
T ss_dssp             CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCH
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHH
Confidence            99999999999999999999999999999999999999 754

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.49  E-value=9.6e-14  Score=123.70  Aligned_cols=115  Identities=16%  Similarity=0.133  Sum_probs=102.7

Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHH------HcCCH-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHH
Q 024536          137 ESMDVYYQEMIKAYPEDALVLANYAKFLKE------IRGDF-------VKAEEYCGRAIL-AKPGDGNVLSMYGDLIWIN  202 (266)
Q Consensus       137 eeA~~~y~rALel~P~~~~al~nlA~~L~~------~~gd~-------e~A~~~~erAL~-ldP~da~al~nla~ll~~~  202 (266)
                      ++|+..|++||+++|+++.+|+++|.++..      ..|++       ++|...|++||+ ++|++..+|.++|.++.. 
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~-  111 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES-  111 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh-
Confidence            789999999999999999999999988753      24775       999999999999 799999999999998866 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCccccccccccccc
Q 024536          203 HKDAPRAKSYFDRAVHSAPDDCH-VLASYARFLWDAGEEEDDDDGDDQETC  252 (266)
Q Consensus       203 ~gd~deAi~~~ekAL~l~P~da~-a~~~lA~ll~~~G~~~eA~~~~~~~~~  252 (266)
                      .|++++|+.+|++|++++|+++. +|..++.++...|+.++|+++.+..-.
T Consensus       112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~  162 (308)
T 2ond_A          112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE  162 (308)
T ss_dssp             TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            89999999999999999999987 999999999999999999866544333

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.48  E-value=2.9e-13  Score=115.32  Aligned_cols=109  Identities=16%  Similarity=0.124  Sum_probs=100.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHHcCCHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYG-DLIWINHKDAPRAKSY  212 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla-~ll~~~~gd~deAi~~  212 (266)
                      +++++|+.+|+++++++|+++.++.++|.++. ..|++++|+.+|+++++++|+++.++.++| .++ . .+++++|+.+
T Consensus        88 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-~-~~~~~~A~~~  164 (272)
T 3u4t_A           88 GQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFY-NKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYY-Y-NKEYVKADSS  164 (272)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH-HTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHH-H-TTCHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH-H-HHHHHHHHHH
Confidence            68999999999999999999999999999886 589999999999999999999999999999 554 4 5699999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCC---cccccc
Q 024536          213 FDRAVHSAPDDCHVLASYARFLWDAGE---EEDDDD  245 (266)
Q Consensus       213 ~ekAL~l~P~da~a~~~lA~ll~~~G~---~~eA~~  245 (266)
                      |+++++++|+++.++..+|.++...++   +++|++
T Consensus       165 ~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~  200 (272)
T 3u4t_A          165 FVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKP  200 (272)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHH
T ss_pred             HHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHH
Confidence            999999999999999999999999998   777774

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.48  E-value=4.7e-13  Score=99.34  Aligned_cols=95  Identities=11%  Similarity=-0.038  Sum_probs=87.0

Q ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHH
Q 024536          153 DALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD------CHV  226 (266)
Q Consensus       153 ~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~d------a~a  226 (266)
                      ++.+|.++|.++. ..|++++|+.+|++|++++|+++.++.++|.++.. .|++++|+.+|++|++++|++      ..+
T Consensus         3 ~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~~   80 (111)
T 2l6j_A            3 QFEKQKEQGNSLF-KQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIK-LGEYTQAIQMCQQGLRYTSTAEHVAIRSKL   80 (111)
T ss_dssp             HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTSCSSTTSHHHHHHH
T ss_pred             hHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence            4678899998876 58999999999999999999999999999999877 899999999999999999999      899


Q ss_pred             HHHHHHHHHHcCCcccccccccc
Q 024536          227 LASYARFLWDAGEEEDDDDGDDQ  249 (266)
Q Consensus       227 ~~~lA~ll~~~G~~~eA~~~~~~  249 (266)
                      +..++.++...|+.++|++..+.
T Consensus        81 ~~~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           81 QYRLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHHHhHhhhHhHHHH
Confidence            99999999999999999976443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.48  E-value=1.9e-13  Score=114.39  Aligned_cols=112  Identities=17%  Similarity=0.174  Sum_probs=104.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------------------
Q 024536          134 KESESMDVYYQEMIKAYPED-------ALVLANYAKFLKEIRGDFVKAEEYCGRAIL-----------------------  183 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~-------~~al~nlA~~L~~~~gd~e~A~~~~erAL~-----------------------  183 (266)
                      +++++|+.+|+++++++|++       +.++.++|.++. ..+++++|..+|++++.                       
T Consensus        52 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~  130 (258)
T 3uq3_A           52 GEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYH-KLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEA  130 (258)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHH-HcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHH
Confidence            68999999999999999988       799999999886 68999999999999999                       


Q ss_pred             ---hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccccc
Q 024536          184 ---AKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGD  247 (266)
Q Consensus       184 ---ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~  247 (266)
                         .+|+++.++.++|.++.. .|++++|+.+|++++.++|+++.++..+|.++...|++++|++.-
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  196 (258)
T 3uq3_A          131 EAYVNPEKAEEARLEGKEYFT-KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADC  196 (258)
T ss_dssp             HHHCCHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHcCcchHHHHHHHHHHHHH-hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence               778888999999998876 899999999999999999999999999999999999999999643

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.48  E-value=7.5e-13  Score=118.46  Aligned_cols=110  Identities=8%  Similarity=-0.085  Sum_probs=96.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLK-EIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY  212 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~-~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~  212 (266)
                      +++++|+++|+++++.+|++.......+++.. ...+++++|..+|+++++.+|+++.+++++|.++.. .|++++|+.+
T Consensus       144 g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~eA~~~  222 (291)
T 3mkr_A          144 DRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMA-QGRWEAAEGV  222 (291)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH-TTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHHHHH
Confidence            68999999999999999999755444333221 124889999999999999999999999999998876 8999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536          213 FDRAVHSAPDDCHVLASYARFLWDAGEEEDDD  244 (266)
Q Consensus       213 ~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~  244 (266)
                      |++|++++|+++.++.+++.+++..|+.+++.
T Consensus       223 l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa  254 (291)
T 3mkr_A          223 LQEALDKDSGHPETLINLVVLSQHLGKPPEVT  254 (291)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHH
Confidence            99999999999999999999999999997753

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.48  E-value=1.9e-13  Score=107.62  Aligned_cols=93  Identities=12%  Similarity=0.118  Sum_probs=84.5

Q ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------H
Q 024536          152 EDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD-------C  224 (266)
Q Consensus       152 ~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~d-------a  224 (266)
                      +.+.++.++|..++ ..|++++|+.+|++||+++|+++.+|.++|.++.. .|++++|+.+|++||+++|++       +
T Consensus         6 d~A~a~~~lG~~~~-~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~a   83 (127)
T 4gcn_A            6 DAAIAEKDLGNAAY-KQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFE-EKKFAECVQFCEKAVEVGRETRADYKLIA   83 (127)
T ss_dssp             HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHH-hhhHHHHHHHHHHHHHhCcccchhhHHHH
Confidence            34678899999887 58999999999999999999999999999999877 899999999999999999976       3


Q ss_pred             HHHHHHHHHHHHcCCccccccc
Q 024536          225 HVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       225 ~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      .++.++|.++..++++++|++.
T Consensus        84 ~~~~~lg~~~~~~~~~~~A~~~  105 (127)
T 4gcn_A           84 KAMSRAGNAFQKQNDLSLAVQW  105 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHH
Confidence            5788999999999999999964

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.47  E-value=1.8e-13  Score=117.91  Aligned_cols=114  Identities=13%  Similarity=-0.007  Sum_probs=102.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHH-----
Q 024536          134 KESESMDVYYQEMIKAYPED---ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD---GNVLSMYGDLIWIN-----  202 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~---~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d---a~al~nla~ll~~~-----  202 (266)
                      +++++|+.+|+++++.+|++   +.+++++|.+++ ..|++++|+.+|++++.+.|++   +.+++++|.+++..     
T Consensus        29 g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~  107 (261)
T 3qky_A           29 GKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYY-QNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYE  107 (261)
T ss_dssp             TCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTT
T ss_pred             CCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhccccc
Confidence            68999999999999999999   899999999887 5899999999999999998855   67899999887541     


Q ss_pred             --cCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCccccccccc
Q 024536          203 --HKDAPRAKSYFDRAVHSAPDDCHVL-----------------ASYARFLWDAGEEEDDDDGDD  248 (266)
Q Consensus       203 --~gd~deAi~~~ekAL~l~P~da~a~-----------------~~lA~ll~~~G~~~eA~~~~~  248 (266)
                        .|++++|+.+|++++...|++..+.                 ..+|.++...|++++|++.-+
T Consensus       108 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  172 (261)
T 3qky_A          108 LDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYE  172 (261)
T ss_dssp             SCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence              6899999999999999999987766                 788999999999999996543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.47  E-value=2.8e-13  Score=118.20  Aligned_cols=112  Identities=13%  Similarity=0.067  Sum_probs=104.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+.+|+++++.+|+++.+++++|.++. ..|++++|+.+|++++.++|+++.++..+|.++.. .|++++|+.+|
T Consensus        17 g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~   94 (359)
T 3ieg_A           17 GQLADALSQFHAAVDGDPDNYIAYYRRATVFL-AMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLK-QGKLDEAEDDF   94 (359)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH-cCChHHHHHHH
Confidence            68999999999999999999999999999886 58999999999999999999999999999999877 79999999999


Q ss_pred             HHHHHhCC---CCHHHHHHH------------HHHHHHcCCcccccccc
Q 024536          214 DRAVHSAP---DDCHVLASY------------ARFLWDAGEEEDDDDGD  247 (266)
Q Consensus       214 ekAL~l~P---~da~a~~~l------------A~ll~~~G~~~eA~~~~  247 (266)
                      ++++.++|   ++..++..+            |.++...|++++|++.-
T Consensus        95 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~  143 (359)
T 3ieg_A           95 KKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFL  143 (359)
T ss_dssp             HHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence            99999999   899888877            78999999999999653

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.46  E-value=1.3e-14  Score=132.44  Aligned_cols=112  Identities=8%  Similarity=-0.075  Sum_probs=105.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD---------------GNVLSMYGDL  198 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d---------------a~al~nla~l  198 (266)
                      .++++|+.+|+++++.+|+++.++.++|.+++ ..|++++|+.+|++||.++|++               +.++.++|.+
T Consensus       127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~-~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~  205 (336)
T 1p5q_A          127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYF-KEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC  205 (336)
T ss_dssp             EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             eecccccchhcCCHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence            56788999999999999999999999999887 5899999999999999999999               6999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccccc
Q 024536          199 IWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGD  247 (266)
Q Consensus       199 l~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~  247 (266)
                      +.. .+++++|+.+|++|++++|+++.+++++|.++..+|++++|++..
T Consensus       206 ~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~  253 (336)
T 1p5q_A          206 HLK-LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADF  253 (336)
T ss_dssp             HHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHH-cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            877 899999999999999999999999999999999999999999643

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.45  E-value=9.2e-13  Score=96.64  Aligned_cols=89  Identities=13%  Similarity=0.028  Sum_probs=83.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHc-CCHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG--DGNVLSMYGDLIWINH-KDAPRAK  210 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~--da~al~nla~ll~~~~-gd~deAi  210 (266)
                      +++++|+.+|+++++++|.++.++.++|.++. ..+++++|+.+|+++++++|+  ++.++.++|.++.. . +++++|+
T Consensus        20 ~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~A~   97 (112)
T 2kck_A           20 GNYTESIDLFEKAIQLDPEESKYWLMKGKALY-NLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRY-IEGKEVEAE   97 (112)
T ss_dssp             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTT-CSSCSHHHH
T ss_pred             hhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHH-HhCCHHHHH
Confidence            68999999999999999999999999999886 589999999999999999999  99999999998866 8 9999999


Q ss_pred             HHHHHHHHhCCCCH
Q 024536          211 SYFDRAVHSAPDDC  224 (266)
Q Consensus       211 ~~~ekAL~l~P~da  224 (266)
                      .+|++++...|.++
T Consensus        98 ~~~~~~~~~~p~~~  111 (112)
T 2kck_A           98 IAEARAKLEHHHHH  111 (112)
T ss_dssp             HHHHHHGGGCCCCC
T ss_pred             HHHHHHhhcccCCC
Confidence            99999999999763

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.45  E-value=2.3e-13  Score=111.47  Aligned_cols=111  Identities=11%  Similarity=-0.010  Sum_probs=96.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+.+|+++++.+| ++.++..++.+......+..+|+.+|+++++++|+++.+++++|.++.. .|++++|+.+|
T Consensus        54 g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~-~g~~~~A~~~~  131 (176)
T 2r5s_A           54 KQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQ-VGRDEEALELL  131 (176)
T ss_dssp             TCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cccHHHHHHHH
Confidence            689999999999999999 8887777665433222334568999999999999999999999999876 89999999999


Q ss_pred             HHHHHhCCCC--HHHHHHHHHHHHHcCCccccccc
Q 024536          214 DRAVHSAPDD--CHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       214 ekAL~l~P~d--a~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      +++++++|+.  +.++..++.++...|+.++|+..
T Consensus       132 ~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~  166 (176)
T 2r5s_A          132 WNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK  166 (176)
T ss_dssp             HHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred             HHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence            9999999975  66999999999999999998854

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.45  E-value=1.3e-13  Score=116.60  Aligned_cols=113  Identities=9%  Similarity=0.120  Sum_probs=87.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-cCCHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN-HKDAPRAKSY  212 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~-~gd~deAi~~  212 (266)
                      +++++|+.+|+++++++|+++.+|+++|.++. ..|++++|+.+|++||+++|+++.+++++|.+++.. ..+.++|+..
T Consensus        68 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~  146 (208)
T 3urz_A           68 RNYDKAYLFYKELLQKAPNNVDCLEACAEMQV-CRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETD  146 (208)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            68999999999999999999999999999886 589999999999999999999999999999887542 1234556666


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCccccccccc
Q 024536          213 FDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDD  248 (266)
Q Consensus       213 ~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~  248 (266)
                      |++++..+|. ..+++.+|..+...+++++|++..+
T Consensus       147 ~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~  181 (208)
T 3urz_A          147 YKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQ  181 (208)
T ss_dssp             HC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             HHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHH
Confidence            6666543322 2345566667777777777775433

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.44  E-value=1.1e-12  Score=106.43  Aligned_cols=93  Identities=10%  Similarity=0.137  Sum_probs=86.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDF--VKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS  211 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~--e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~  211 (266)
                      +++++|+.+|+++++++|+++.++.++|.+++...+++  ++|+.+|+++++++|+++.+++++|.++.. .|++++|+.
T Consensus        58 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~  136 (177)
T 2e2e_A           58 NDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFM-QANYAQAIE  136 (177)
T ss_dssp             TCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cccHHHHHH
Confidence            58999999999999999999999999999844467998  999999999999999999999999998877 899999999


Q ss_pred             HHHHHHHhCCCCHHHH
Q 024536          212 YFDRAVHSAPDDCHVL  227 (266)
Q Consensus       212 ~~ekAL~l~P~da~a~  227 (266)
                      +|++++.++|++....
T Consensus       137 ~~~~al~~~p~~~~~~  152 (177)
T 2e2e_A          137 LWQKVMDLNSPRINRT  152 (177)
T ss_dssp             HHHHHHHTCCTTSCHH
T ss_pred             HHHHHHhhCCCCccHH
Confidence            9999999999986554

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.44  E-value=2.4e-13  Score=106.26  Aligned_cols=91  Identities=11%  Similarity=-0.069  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 024536          156 VLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLW  235 (266)
Q Consensus       156 al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~  235 (266)
                      .++++|..+. ..|++++|+.+|++|++++|+++.+|+++|.++.. .|++++|+.+|++|++++|+++.++..+|.++.
T Consensus        19 ~~~~~g~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~   96 (121)
T 1hxi_A           19 NPMEEGLSML-KLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAE-NEKDGLAIIALNHARMLDPKDIAVHAALAVSHT   96 (121)
T ss_dssp             CHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            3567777765 58999999999999999999999999999999876 899999999999999999999999999999999


Q ss_pred             HcCCccccccccc
Q 024536          236 DAGEEEDDDDGDD  248 (266)
Q Consensus       236 ~~G~~~eA~~~~~  248 (266)
                      ..|++++|++.-+
T Consensus        97 ~~g~~~~A~~~~~  109 (121)
T 1hxi_A           97 NEHNANAALASLR  109 (121)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHH
Confidence            9999999996533

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.44  E-value=8.7e-13  Score=115.09  Aligned_cols=111  Identities=14%  Similarity=0.096  Sum_probs=90.8

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHH------------HHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKP---GDGNVLSMY------------GDL  198 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP---~da~al~nl------------a~l  198 (266)
                      +++++|+.+|+++++++|+++.++..+|.++. ..|++++|..+|++++.++|   +++.++..+            |.+
T Consensus        51 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  129 (359)
T 3ieg_A           51 GKSKAALPDLTKVIALKMDFTAARLQRGHLLL-KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALD  129 (359)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH-HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHH
Confidence            57888888888888888888888888888775 57888888888888888888   788877776            455


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536          199 IWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       199 l~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      +.. .|++++|+.+|++++..+|+++.++..+|.++...|++++|++.
T Consensus       130 ~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~  176 (359)
T 3ieg_A          130 AFD-GADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISD  176 (359)
T ss_dssp             HHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHH-ccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHH
Confidence            544 78888888888888888888888888888888888888888854

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.43  E-value=1.9e-12  Score=92.85  Aligned_cols=85  Identities=19%  Similarity=0.302  Sum_probs=78.4

Q ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024536          152 EDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYA  231 (266)
Q Consensus       152 ~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA  231 (266)
                      .++.+++++|.++. ..+++++|+.+|++|+.++|+++.++.++|.++.. .+++++|+.+|+++++++|+++.++.+++
T Consensus         7 ~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~p~~~~~~~~l~   84 (91)
T 1na3_A            7 NSAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPNNAEAKQNLG   84 (91)
T ss_dssp             HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            46788999998876 58999999999999999999999999999998876 89999999999999999999999999999


Q ss_pred             HHHHHcC
Q 024536          232 RFLWDAG  238 (266)
Q Consensus       232 ~ll~~~G  238 (266)
                      .++...|
T Consensus        85 ~~~~~~g   91 (91)
T 1na3_A           85 NAKQKQG   91 (91)
T ss_dssp             HHHHHHC
T ss_pred             HHHHhcC
Confidence            9987754

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.43  E-value=5.5e-13  Score=118.75  Aligned_cols=115  Identities=15%  Similarity=0.132  Sum_probs=87.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDAL-VLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY  212 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~-al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~  212 (266)
                      +++++|++.|+++++++|.++. +|.+++.++. ..|++++|..+|++|++.+|.+..+|..++.+.+...|++++|+.+
T Consensus       113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~  191 (308)
T 2ond_A          113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR-RAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI  191 (308)
T ss_dssp             TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHH-HHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhccccCccHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            4678888888888888887775 7888877665 4577777777777777777777777665554433335788888888


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCcccccccccc
Q 024536          213 FDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDDQ  249 (266)
Q Consensus       213 ~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~~  249 (266)
                      |++|++++|+++.+|..++.++...|+.++|.+..+.
T Consensus       192 ~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~  228 (308)
T 2ond_A          192 FELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFER  228 (308)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            8888888888888888888888888888888865443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.42  E-value=1.4e-12  Score=121.50  Aligned_cols=111  Identities=16%  Similarity=0.204  Sum_probs=101.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+.+|+++++.+|+++.++.++|.++. ..|++++|+.+|++++.++|+++.++.++|.++.. .|++++|+.+|
T Consensus       290 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~  367 (537)
T 3fp2_A          290 ENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYF-ILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYK-QGKFTESEAFF  367 (537)
T ss_dssp             SCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            67899999999999999999999999998876 58999999999999999999999999999988876 79999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      +++++++|+++.++..+|.++...|++++|++.
T Consensus       368 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  400 (537)
T 3fp2_A          368 NETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQ  400 (537)
T ss_dssp             HHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence            999999999999999999999999999999854

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.42  E-value=1.9e-13  Score=125.04  Aligned_cols=110  Identities=16%  Similarity=0.103  Sum_probs=78.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCH-----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDA-----------------LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYG  196 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~-----------------~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla  196 (266)
                      +++++|+.+|++|++++|++.                 .+|+|+|.++. ..+++++|+.+|++||+++|+++.+|+++|
T Consensus       193 g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg  271 (338)
T 2if4_A          193 EKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLI-KLKRYDEAIGHCNIVLTEEEKNPKALFRRG  271 (338)
T ss_dssp             SCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHH-TTTCCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            789999999999999999988                 48999999876 589999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCcccccc
Q 024536          197 DLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDA-GEEEDDDD  245 (266)
Q Consensus       197 ~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~-G~~~eA~~  245 (266)
                      .++.. .+++++|+.+|++|++++|+++.++..++.+.... +..+.+.+
T Consensus       272 ~a~~~-~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~  320 (338)
T 2if4_A          272 KAKAE-LGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE  320 (338)
T ss_dssp             HHHHT-TTCHHHHHHHHHHTTC----------------------------
T ss_pred             HHHHH-cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99876 89999999999999999999999999999885544 34444443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.41  E-value=7.4e-13  Score=117.61  Aligned_cols=88  Identities=17%  Similarity=0.087  Sum_probs=83.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+.+|++|++++|+++.+++++|.++. ..|++++|+.+|++|++++|+++.+++++|.++.. .|++++|+.+|
T Consensus        18 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~   95 (281)
T 2c2l_A           18 RKYPEAAACYGRAITRNPLVAVYYTNRALCYL-KMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE-MESYDEAIANL   95 (281)
T ss_dssp             TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            68999999999999999999999999999886 68999999999999999999999999999999876 89999999999


Q ss_pred             HHHHHhCCCC
Q 024536          214 DRAVHSAPDD  223 (266)
Q Consensus       214 ekAL~l~P~d  223 (266)
                      ++|++++|++
T Consensus        96 ~~al~l~p~~  105 (281)
T 2c2l_A           96 QRAYSLAKEQ  105 (281)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHhCccc
Confidence            9999999976

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.41  E-value=1.6e-12  Score=123.24  Aligned_cols=111  Identities=14%  Similarity=0.047  Sum_probs=75.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCC-HHHHHHHHHHHHHHcCCH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILA------KPGD-GNVLSMYGDLIWINHKDA  206 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~l------dP~d-a~al~nla~ll~~~~gd~  206 (266)
                      +++++|+++|+++++.+|+++.+|++++.++. ..|++++|+.+|++++++      +|++ ..+|..++.++.. .|++
T Consensus       455 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~-~g~~  532 (597)
T 2xpi_A          455 GNILLANEYLQSSYALFQYDPLLLNELGVVAF-NKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK-LKMY  532 (597)
T ss_dssp             TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH-TTCH
T ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH-hcCH
Confidence            46667777777777777777777777766654 466777777777777766      5554 5666667766655 6677


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536          207 PRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       207 deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      ++|+.+|+++++++|+++.++..++.++...|++++|++.
T Consensus       533 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  572 (597)
T 2xpi_A          533 DAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITH  572 (597)
T ss_dssp             HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence            7777777777777777777777777777777777777654

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.41  E-value=1.4e-12  Score=118.90  Aligned_cols=113  Identities=13%  Similarity=0.088  Sum_probs=103.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+.+|+++++.+|+++.+++++|.++. ..|++++|+.+|+++++++|+++.++..+|.++.. .|++++|+.+|
T Consensus        40 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~  117 (450)
T 2y4t_A           40 GQLADALSQFHAAVDGDPDNYIAYYRRATVFL-AMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLK-QGKLDEAEDDF  117 (450)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            68999999999999999999999999999886 58999999999999999999999999999998876 89999999999


Q ss_pred             HHHHHhCCCCH---HHHHHH------------HHHHHHcCCccccccccc
Q 024536          214 DRAVHSAPDDC---HVLASY------------ARFLWDAGEEEDDDDGDD  248 (266)
Q Consensus       214 ekAL~l~P~da---~a~~~l------------A~ll~~~G~~~eA~~~~~  248 (266)
                      ++++.++|++.   .++..+            |.++...|++++|++..+
T Consensus       118 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~  167 (450)
T 2y4t_A          118 KKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLD  167 (450)
T ss_dssp             HHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            99999999998   776655            666999999999986543

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.40  E-value=1.1e-12  Score=111.64  Aligned_cols=113  Identities=7%  Similarity=-0.031  Sum_probs=98.8

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHH-----------------cCCHHHHHHHHHHHHHhCCCCHHHH-
Q 024536          134 KESESMDVYYQEMIKAYPEDAL---VLANYAKFLKEI-----------------RGDFVKAEEYCGRAILAKPGDGNVL-  192 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~---al~nlA~~L~~~-----------------~gd~e~A~~~~erAL~ldP~da~al-  192 (266)
                      +++++|+..|+++++.+|+++.   +++++|.++...                 .+++++|+..|+++|+..|+++.++ 
T Consensus        55 ~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~  134 (225)
T 2yhc_A           55 ADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTD  134 (225)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHH
T ss_pred             CCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence            6899999999999999999974   788888876531                 4689999999999999999998665 


Q ss_pred             ----------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCcccccccc
Q 024536          193 ----------------SMYGDLIWINHKDAPRAKSYFDRAVHSAPDDC---HVLASYARFLWDAGEEEDDDDGD  247 (266)
Q Consensus       193 ----------------~nla~ll~~~~gd~deAi~~~ekAL~l~P~da---~a~~~lA~ll~~~G~~~eA~~~~  247 (266)
                                      ..+|.+++. +|++++|+..|+++++..|+++   .++..+|.++..+|+.++|++..
T Consensus       135 a~~~l~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~  207 (225)
T 2yhc_A          135 ATKRLVFLKDRLAKYEYSVAEYYTE-RGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVA  207 (225)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHH
Confidence                            467777766 7999999999999999999987   67999999999999999999543

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.40  E-value=5.7e-13  Score=114.80  Aligned_cols=112  Identities=18%  Similarity=0.001  Sum_probs=99.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHH----------
Q 024536          134 KESESMDVYYQEMIKAYPED---ALVLANYAKFLKEI--------RGDFVKAEEYCGRAILAKPGDGNVL----------  192 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~---~~al~nlA~~L~~~--------~gd~e~A~~~~erAL~ldP~da~al----------  192 (266)
                      +++++|+.+|+++++.+|++   +.+++++|.++. .        .|++++|+.+|++++..+|+++.+.          
T Consensus        66 ~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~-~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~  144 (261)
T 3qky_A           66 KEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYY-KLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELR  144 (261)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH-HHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHH-HhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHH
Confidence            68999999999999998865   578999998876 5        7999999999999999999997766          


Q ss_pred             -------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHc----------CCcccccccc
Q 024536          193 -------SMYGDLIWINHKDAPRAKSYFDRAVHSAPD---DCHVLASYARFLWDA----------GEEEDDDDGD  247 (266)
Q Consensus       193 -------~nla~ll~~~~gd~deAi~~~ekAL~l~P~---da~a~~~lA~ll~~~----------G~~~eA~~~~  247 (266)
                             +++|.++.. .|++++|+.+|+++++..|+   .+.++..+|.++...          |++++|++.-
T Consensus       145 ~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~  218 (261)
T 3qky_A          145 AKLARKQYEAARLYER-RELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELY  218 (261)
T ss_dssp             HHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHH
Confidence                   788998876 89999999999999999998   466899999999987          7778888543

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.40  E-value=1.2e-12  Score=99.08  Aligned_cols=96  Identities=18%  Similarity=0.072  Sum_probs=88.9

Q ss_pred             CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 024536          150 YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLAS  229 (266)
Q Consensus       150 ~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~  229 (266)
                      .|.++.+|+++|..+. ..+++++|+.+|++++..+|+++.++.++|.++.. .+++++|+.+|+++++++|+++.++..
T Consensus        12 ~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~   89 (133)
T 2lni_A           12 NPDLALMVKNKGNECF-QKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK-LLEFQLALKDCEECIQLEPTFIKGYTR   89 (133)
T ss_dssp             SSCHHHHHHHHHHHHH-HTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTT-TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-hccHHHHHHHHHHHHHhCCCchHHHHH
Confidence            4677889999998876 58999999999999999999999999999998866 899999999999999999999999999


Q ss_pred             HHHHHHHcCCcccccccc
Q 024536          230 YARFLWDAGEEEDDDDGD  247 (266)
Q Consensus       230 lA~ll~~~G~~~eA~~~~  247 (266)
                      +|.++...|++++|++..
T Consensus        90 la~~~~~~~~~~~A~~~~  107 (133)
T 2lni_A           90 KAAALEAMKDYTKAMDVY  107 (133)
T ss_dssp             HHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHH
Confidence            999999999999999643

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.40  E-value=3.5e-12  Score=116.37  Aligned_cols=114  Identities=13%  Similarity=0.090  Sum_probs=102.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHH------------HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANY------------AKFLKEIRGDFVKAEEYCGRAILAKPGDGN----VLSMYGD  197 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nl------------A~~L~~~~gd~e~A~~~~erAL~ldP~da~----al~nla~  197 (266)
                      +++++|+.+|+++++++|+++.++..+            |.++. ..|++++|..+|++++.++|+++.    ++.++|.
T Consensus       225 g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~  303 (450)
T 2y4t_A          225 GDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELI-RDGRYTDATSKYESVMKTEPSIAEYTVRSKERICH  303 (450)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence            689999999999999999999988777            77665 579999999999999999999954    7888898


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccccccc
Q 024536          198 LIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDDQ  249 (266)
Q Consensus       198 ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~~  249 (266)
                      ++.. .|++++|+.+|++++.++|+++.++..+|.++...|++++|++.-+.
T Consensus       304 ~~~~-~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~  354 (450)
T 2y4t_A          304 CFSK-DEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYET  354 (450)
T ss_dssp             HHHT-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHH-CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            8866 79999999999999999999999999999999999999999965433

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.39  E-value=3.3e-12  Score=121.01  Aligned_cols=111  Identities=12%  Similarity=0.066  Sum_probs=79.8

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+.+|+++++++|++..+|++++.++. ..|++++|+++|++++..+|+++.++..++.++.. .|++++|+.+|
T Consensus       387 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~  464 (597)
T 2xpi_A          387 NKISEARRYFSKSSTMDPQFGPAWIGFAHSFA-IEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQ-LGNILLANEYL  464 (597)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHH-HTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            56777777777777777777777777776654 46777777777777777777777777777766655 57777777777


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      +++++++|+++.++..++.++...|++++|++.
T Consensus       465 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  497 (597)
T 2xpi_A          465 QSSYALFQYDPLLLNELGVVAFNKSDMQTAINH  497 (597)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence            777777777777777777777777777777754

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.39  E-value=9.2e-13  Score=112.15  Aligned_cols=114  Identities=18%  Similarity=0.091  Sum_probs=100.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHH-----
Q 024536          134 KESESMDVYYQEMIKAYPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN---VLSMYGDLIWIN-----  202 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~---~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~---al~nla~ll~~~-----  202 (266)
                      +++++|+.+|+++++.+|+++   .+++++|.+++ ..|++++|+..|+++++.+|+++.   +++.+|.++...     
T Consensus        18 g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~-~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~   96 (225)
T 2yhc_A           18 GNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY-KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSAL   96 (225)
T ss_dssp             TCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC---
T ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhh
Confidence            689999999999999999874   78999999887 589999999999999999999875   788899887642     


Q ss_pred             ------------cCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCccccccccc
Q 024536          203 ------------HKDAPRAKSYFDRAVHSAPDDCHVL-----------------ASYARFLWDAGEEEDDDDGDD  248 (266)
Q Consensus       203 ------------~gd~deAi~~~ekAL~l~P~da~a~-----------------~~lA~ll~~~G~~~eA~~~~~  248 (266)
                                  .+++++|+.+|+++++..|+++.++                 ..+|.++...|++++|++.-+
T Consensus        97 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~  171 (225)
T 2yhc_A           97 QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVE  171 (225)
T ss_dssp             -----------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence                        4689999999999999999998654                 577889999999999996533

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.38  E-value=3.4e-12  Score=94.17  Aligned_cols=94  Identities=16%  Similarity=-0.019  Sum_probs=86.3

Q ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 024536          153 DALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYAR  232 (266)
Q Consensus       153 ~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~  232 (266)
                      .+.+++.+|..+. ..+++++|..+|++++..+|+++.++.++|.++.. .+++++|+.+|++++.++|+++.++..+|.
T Consensus         3 ~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~   80 (118)
T 1elw_A            3 QVNELKEKGNKAL-SVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAK-KGDYQKAYEDGCKTVDLKPDWGKGYSRKAA   80 (118)
T ss_dssp             HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh-hccHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            4567888898776 58999999999999999999999999999998877 799999999999999999999999999999


Q ss_pred             HHHHcCCccccccccc
Q 024536          233 FLWDAGEEEDDDDGDD  248 (266)
Q Consensus       233 ll~~~G~~~eA~~~~~  248 (266)
                      ++...|++++|.+.-+
T Consensus        81 ~~~~~~~~~~A~~~~~   96 (118)
T 1elw_A           81 ALEFLNRFEEAKRTYE   96 (118)
T ss_dssp             HHHHTTCHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHH
Confidence            9999999999996543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.38  E-value=8e-12  Score=103.23  Aligned_cols=101  Identities=12%  Similarity=-0.006  Sum_probs=89.8

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG----------------NVLSMYGD  197 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da----------------~al~nla~  197 (266)
                      +++++|+.+|+++++++|+++.+++++|.++. ..|++++|+.+|++|+.+.|.+.                .+++++|.
T Consensus        51 g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (213)
T 1hh8_A           51 KNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY-QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAF  129 (213)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCccchHHHHHHHHHHH-HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHH
Confidence            68999999999999999999999999999886 58999999999999999888877                99999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024536          198 LIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWD  236 (266)
Q Consensus       198 ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~  236 (266)
                      ++.. .|++++|+.+|++|++++|++.......+.....
T Consensus       130 ~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~  167 (213)
T 1hh8_A          130 MYAK-KEEWKKAEEQLALATSMKSEPRHSKIDKAMECVW  167 (213)
T ss_dssp             HHHH-TTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHHH
T ss_pred             HHHH-ccCHHHHHHHHHHHHHcCcccccchHHHHHHHHH
Confidence            9877 8999999999999999999876555555544443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.38  E-value=1.2e-12  Score=116.01  Aligned_cols=112  Identities=13%  Similarity=0.035  Sum_probs=90.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPED------ALVLANYAKFLKEIR-GDFVKAEEYCGRAILAKPGD------GNVLSMYGDLIW  200 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~------~~al~nlA~~L~~~~-gd~e~A~~~~erAL~ldP~d------a~al~nla~ll~  200 (266)
                      +++++|+.+|++|+++.|..      +.++.++|.++. .. |++++|+.+|++|+++.|.+      +.++.++|.++.
T Consensus        91 g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~-~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~  169 (292)
T 1qqe_A           91 GNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILE-NDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKA  169 (292)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence            57888999999998888754      467888888765 45 88999999999999888765      567888888886


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHcCCcccccccc
Q 024536          201 INHKDAPRAKSYFDRAVHSAPDDCH-------VLASYARFLWDAGEEEDDDDGD  247 (266)
Q Consensus       201 ~~~gd~deAi~~~ekAL~l~P~da~-------a~~~lA~ll~~~G~~~eA~~~~  247 (266)
                      . .|++++|+.+|++++++.|++..       ++.++|.++..+|++++|++.-
T Consensus       170 ~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~  222 (292)
T 1qqe_A          170 L-DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTL  222 (292)
T ss_dssp             H-TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             H-hCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            6 78899999999999998887653       5678888888889988888543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.38  E-value=3.9e-12  Score=94.46  Aligned_cols=97  Identities=18%  Similarity=0.297  Sum_probs=86.6

Q ss_pred             HCCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 024536          149 AYPED-ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVL  227 (266)
Q Consensus       149 l~P~~-~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~  227 (266)
                      .+|.+ +.+++++|.++. ..+++++|+.+|++++..+|+++.++..+|.++.. .+++++|+.+|++++.++|+++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~   80 (125)
T 1na0_A            3 MDPGNSAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPNNAEAW   80 (125)
T ss_dssp             ----CHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CCccccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhCCccHHHH
Confidence            46666 788999998776 58999999999999999999999999999998876 8999999999999999999999999


Q ss_pred             HHHHHHHHHcCCcccccccc
Q 024536          228 ASYARFLWDAGEEEDDDDGD  247 (266)
Q Consensus       228 ~~lA~ll~~~G~~~eA~~~~  247 (266)
                      ..+|.++...|++++|++..
T Consensus        81 ~~la~~~~~~~~~~~A~~~~  100 (125)
T 1na0_A           81 YNLGNAYYKQGDYDEAIEYY  100 (125)
T ss_dssp             HHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHH
Confidence            99999999999999999653

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.37  E-value=1.3e-12  Score=97.87  Aligned_cols=98  Identities=13%  Similarity=0.038  Sum_probs=89.5

Q ss_pred             HHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 024536          148 KAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVL  227 (266)
Q Consensus       148 el~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~  227 (266)
                      +.+|.++.++..+|..+. ..+++++|..+|++++..+|+++.++.++|.++.. .+++++|+.+|++++.++|+++.++
T Consensus         6 ~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~   83 (131)
T 2vyi_A            6 EEDSAEAERLKTEGNEQM-KVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSK-LGNYAGAVQDCERAICIDPAYSKAY   83 (131)
T ss_dssp             -CHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hcchhhhHHHHHHHHHHH-HccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hhchHHHHHHHHHHHhcCccCHHHH
Confidence            345677888999998876 58999999999999999999999999999998876 8999999999999999999999999


Q ss_pred             HHHHHHHHHcCCcccccccc
Q 024536          228 ASYARFLWDAGEEEDDDDGD  247 (266)
Q Consensus       228 ~~lA~ll~~~G~~~eA~~~~  247 (266)
                      ..+|.++...|++++|++.-
T Consensus        84 ~~~~~~~~~~~~~~~A~~~~  103 (131)
T 2vyi_A           84 GRMGLALSSLNKHVEAVAYY  103 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999653

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.37  E-value=1.1e-13  Score=131.68  Aligned_cols=113  Identities=12%  Similarity=0.014  Sum_probs=105.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD---------------GNVLSMYGDL  198 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d---------------a~al~nla~l  198 (266)
                      .++++|+.+|+++++.+|+++.+|.++|.+++ ..+++++|+.+|++||.++|++               ..+|+++|.+
T Consensus       248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~-~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~  326 (457)
T 1kt0_A          248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYF-KGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC  326 (457)
T ss_dssp             EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccCcchhhcCHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence            46778999999999999999999999999887 5899999999999999999999               7999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccccc
Q 024536          199 IWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDD  248 (266)
Q Consensus       199 l~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~  248 (266)
                      ++. .+++++|+.+|++||+++|+++.+++++|.+|..++++++|++..+
T Consensus       327 ~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~  375 (457)
T 1kt0_A          327 YLK-LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFE  375 (457)
T ss_dssp             HHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHH-hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            877 8999999999999999999999999999999999999999996543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.37  E-value=8.9e-12  Score=111.47  Aligned_cols=105  Identities=14%  Similarity=0.113  Sum_probs=90.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH-HHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPR-AKSY  212 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~de-Ai~~  212 (266)
                      +++++|+.+|+++++.+|+++.+|+++|.++. ..|++++|+.+|++||+++|+++.++.+++.++.. .|+.++ |..+
T Consensus       180 ~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~-~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~-~g~~~eaa~~~  257 (291)
T 3mkr_A          180 EKLQDAYYIFQEMADKCSPTLLLLNGQAACHM-AQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQH-LGKPPEVTNRY  257 (291)
T ss_dssp             THHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCCHHHHHHH
Confidence            68999999999999999999999999999876 68999999999999999999999999999988877 677765 6799


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536          213 FDRAVHSAPDDCHVLASYARFLWDAGEEEDDD  244 (266)
Q Consensus       213 ~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~  244 (266)
                      ++++++++|+++.+..    +......++++.
T Consensus       258 ~~~~~~~~P~~~~~~d----~~~~~~~fd~~~  285 (291)
T 3mkr_A          258 LSQLKDAHRSHPFIKE----YRAKENDFDRLV  285 (291)
T ss_dssp             HHHHHHHCTTCHHHHH----HHHHHHHHHHHH
T ss_pred             HHHHHHhCCCChHHHH----HHHHHHHHHHHH
Confidence            9999999999998763    333444444443

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.36  E-value=9.6e-13  Score=111.02  Aligned_cols=111  Identities=21%  Similarity=0.281  Sum_probs=100.6

Q ss_pred             CCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKA--------YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILA--------KPGDGNVLSMYGD  197 (266)
Q Consensus       134 ~~~eeA~~~y~rALel--------~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~l--------dP~da~al~nla~  197 (266)
                      +++++|+.+|++++++        +|..+.++.++|.++. ..|++++|+.+|++|+.+        +|....++.++|.
T Consensus        57 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  135 (283)
T 3edt_B           57 NKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYG-KRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLAL  135 (283)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            6899999999999998        4666789999999876 589999999999999998        5777899999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCccccccc
Q 024536          198 LIWINHKDAPRAKSYFDRAVHS--------APDDCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       198 ll~~~~gd~deAi~~~ekAL~l--------~P~da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      ++.. .|++++|+.+|++++++        .|..+.++..+|.++...|++++|++.
T Consensus       136 ~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  191 (283)
T 3edt_B          136 LCQN-QGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETL  191 (283)
T ss_dssp             HHHT-TTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHH-cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            8876 89999999999999999        788888999999999999999999953

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=2.5e-12  Score=99.32  Aligned_cols=99  Identities=13%  Similarity=-0.011  Sum_probs=91.0

Q ss_pred             HHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 024536          147 IKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD---GNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (266)
Q Consensus       147 Lel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d---a~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~d  223 (266)
                      +..+|.++..++.+|..+. ..+++++|+.+|++++.++|++   ..++.++|.++.. .+++++|+.+|++++.++|++
T Consensus        21 ~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~   98 (148)
T 2dba_A           21 ATPGASSVEQLRKEGNELF-KCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLK-LEDYDKAETEASKAIEKDGGD   98 (148)
T ss_dssp             CCTTCCCHHHHHHHHHHHH-TTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTSCC
T ss_pred             CccchHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH-HccHHHHHHHHHHHHhhCccC
Confidence            3457889999999998876 5899999999999999999998   8999999998876 899999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCcccccccc
Q 024536          224 CHVLASYARFLWDAGEEEDDDDGD  247 (266)
Q Consensus       224 a~a~~~lA~ll~~~G~~~eA~~~~  247 (266)
                      +.++..+|.++...|++++|++.-
T Consensus        99 ~~~~~~~a~~~~~~~~~~~A~~~~  122 (148)
T 2dba_A           99 VKALYRRSQALEKLGRLDQAVLDL  122 (148)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHH
Confidence            999999999999999999999653

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.35  E-value=2.6e-12  Score=119.64  Aligned_cols=111  Identities=18%  Similarity=0.163  Sum_probs=104.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+.+|+++++.+|+ +.++.++|.++. ..|++++|..+|++++..+|+++.++..+|.++.. .|++++|+.+|
T Consensus       257 ~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~  333 (537)
T 3fp2_A          257 NNLLDAQVLLQESINLHPT-PNSYIFLALTLA-DKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFI-LQDYKNAKEDF  333 (537)
T ss_dssp             TCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTC-CSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhcCCC-chHHHHHHHHHH-HhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh-cCCHHHHHHHH
Confidence            5889999999999999999 999999999875 57999999999999999999999999999998876 89999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCcccccccc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGD  247 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~  247 (266)
                      ++++.++|+++.++..+|.++...|++++|++.-
T Consensus       334 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  367 (537)
T 3fp2_A          334 QKAQSLNPENVYPYIQLACLLYKQGKFTESEAFF  367 (537)
T ss_dssp             HHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999999999999999999653

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.35  E-value=1.1e-12  Score=116.33  Aligned_cols=114  Identities=16%  Similarity=0.067  Sum_probs=98.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPED------ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD------GNVLSMYGDLIWI  201 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~------~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d------a~al~nla~ll~~  201 (266)
                      +++++|+.+|++|+++.+..      +.++.++|.++. ..|++++|+.+|++|+.+.|..      +.++.++|.++..
T Consensus        51 g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~  129 (292)
T 1qqe_A           51 KELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFK-SGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEN  129 (292)
T ss_dssp             TCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            68899999999999996432      678999999876 5899999999999999998754      5689999998865


Q ss_pred             Hc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCcccccccccc
Q 024536          202 NH-KDAPRAKSYFDRAVHSAPDD------CHVLASYARFLWDAGEEEDDDDGDDQ  249 (266)
Q Consensus       202 ~~-gd~deAi~~~ekAL~l~P~d------a~a~~~lA~ll~~~G~~~eA~~~~~~  249 (266)
                       . |++++|+.+|++|+++.|.+      +.++.++|.++..+|++++|++..+.
T Consensus       130 -~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~  183 (292)
T 1qqe_A          130 -DLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSK  183 (292)
T ss_dssp             -TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             -hhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence             5 99999999999999999865      56788999999999999999965443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.34  E-value=3.5e-13  Score=111.92  Aligned_cols=114  Identities=10%  Similarity=-0.059  Sum_probs=100.5

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHH
Q 024536          132 SGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG----------------NVLSMY  195 (266)
Q Consensus       132 ~~~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da----------------~al~nl  195 (266)
                      ..+++++|.+.|....+..+..+..+.++|..++ ..+++++|+.+|++|+.+.|.++                .++.++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   94 (198)
T 2fbn_A           16 NLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFF-KKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNL   94 (198)
T ss_dssp             ------CCCSGGGCCHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhccccCchhhCCHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence            3468888888998888888889999999999886 58999999999999999999998                899999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccccc
Q 024536          196 GDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGD  247 (266)
Q Consensus       196 a~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~  247 (266)
                      |.++.. .+++++|+.+|++|+.++|+++.++..+|.++...|++++|++..
T Consensus        95 a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~  145 (198)
T 2fbn_A           95 ATCYNK-NKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENL  145 (198)
T ss_dssp             HHHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHH-hcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHH
Confidence            998876 899999999999999999999999999999999999999998643

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.34  E-value=5.5e-12  Score=106.09  Aligned_cols=91  Identities=19%  Similarity=0.140  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Q 024536          154 ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG-------DGN-----VLSMYGDLIWINHKDAPRAKSYFDRAVHS--  219 (266)
Q Consensus       154 ~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~-------da~-----al~nla~ll~~~~gd~deAi~~~ekAL~l--  219 (266)
                      +..+.+.|..+. ..|+|++|+.+|++||+++|+       +..     +|.|+|.++.. .|++++|+.+|++||++  
T Consensus        11 a~~~~~~G~~l~-~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~-Lgr~~eAl~~~~kAL~l~n   88 (159)
T 2hr2_A           11 AYLALSDAQRQL-VAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG-LRSFDEALHSADKALHYFN   88 (159)
T ss_dssp             HHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhhh
Confidence            567788888876 579999999999999999999       544     99999999877 79999999999999999  


Q ss_pred             -----CCCCHHHH----HHHHHHHHHcCCccccccc
Q 024536          220 -----APDDCHVL----ASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       220 -----~P~da~a~----~~lA~ll~~~G~~~eA~~~  246 (266)
                           +|+++.+|    ++.|.+|..+|++++|++.
T Consensus        89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~  124 (159)
T 2hr2_A           89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPE  124 (159)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHH
Confidence                 99999999    9999999999999999953

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.32  E-value=2.8e-12  Score=118.18  Aligned_cols=114  Identities=15%  Similarity=0.151  Sum_probs=97.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HcCCHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLK--EIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI---NHKDAPR  208 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~--~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~---~~gd~de  208 (266)
                      +++++|+.+|++|++++|+++.++.+++.+++  ...++.++|+.+|++|++++|+++.++.++|..+..   ..+++++
T Consensus       152 ~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~  231 (472)
T 4g1t_A          152 NQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGE  231 (472)
T ss_dssp             THHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CH
T ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHH
Confidence            57999999999999999999999999998753  235778899999999999999999999998876543   2467899


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccccc
Q 024536          209 AKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGD  247 (266)
Q Consensus       209 Ai~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~  247 (266)
                      |+.+|++|+.++|+++.++.++|.++...|++++|++.-
T Consensus       232 a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~  270 (472)
T 4g1t_A          232 GEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELL  270 (472)
T ss_dssp             HHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHH
Confidence            999999999999999999999999999999999998643

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.32  E-value=1.2e-11  Score=93.07  Aligned_cols=90  Identities=13%  Similarity=0.037  Sum_probs=76.9

Q ss_pred             HCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHH
Q 024536          149 AYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAP--DDCHV  226 (266)
Q Consensus       149 l~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P--~da~a  226 (266)
                      .+|+++.+|+++|.++. ..|++++|+.+|++|++++|+++.+|+++|.++.. .|++++|+.+|++|+++.|  .+..+
T Consensus         2 ~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~~~~~~~~~   79 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHL-KHDNASRALALFEELVETDPDYVGTYYHLGKLYER-LDRTDDAIDTYAQGIEVAREEGTQKD   79 (100)
T ss_dssp             ---CCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             CCccCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhhhcCCchhH
Confidence            57999999999999886 58999999999999999999999999999999876 8999999999999999987  45666


Q ss_pred             HHHHHHHHHHcCCc
Q 024536          227 LASYARFLWDAGEE  240 (266)
Q Consensus       227 ~~~lA~ll~~~G~~  240 (266)
                      ...+..++...+.+
T Consensus        80 ~~~l~~~l~~~~~~   93 (100)
T 3ma5_A           80 LSELQDAKLKAEGL   93 (100)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcccc
Confidence            67777777655544

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.32  E-value=3.2e-11  Score=90.02  Aligned_cols=88  Identities=22%  Similarity=0.346  Sum_probs=82.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+.+|+++++.+|.++.++.++|.++. ..|++++|..+|++++..+|.++.++..++.++.. .|++++|+.+|
T Consensus        49 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~  126 (136)
T 2fo7_A           49 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK-QGDYDEAIEYY  126 (136)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TTCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-HccHHHHHHHH
Confidence            68999999999999999999999999999876 58999999999999999999999999999998876 89999999999


Q ss_pred             HHHHHhCCCC
Q 024536          214 DRAVHSAPDD  223 (266)
Q Consensus       214 ekAL~l~P~d  223 (266)
                      ++++.++|++
T Consensus       127 ~~~~~~~~~~  136 (136)
T 2fo7_A          127 QKALELDPRS  136 (136)
T ss_dssp             HHHHHHSTTC
T ss_pred             HHHHccCCCC
Confidence            9999999974

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.32  E-value=7.2e-12  Score=100.73  Aligned_cols=91  Identities=11%  Similarity=0.040  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 024536          154 ALVLANYAKFLKEIRGDFVKAEEYCGRAILA------------------KPGDGNVLSMYGDLIWINHKDAPRAKSYFDR  215 (266)
Q Consensus       154 ~~al~nlA~~L~~~~gd~e~A~~~~erAL~l------------------dP~da~al~nla~ll~~~~gd~deAi~~~ek  215 (266)
                      +..+.+.|..++ ..|++++|+.+|++||.+                  +|.++.+|.++|.++.. .|++++|+.+|++
T Consensus        11 a~~~~~~G~~~~-~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~~~~~~A~~~~~~   88 (162)
T 3rkv_A           11 VEALRQKGNELF-VQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLN-IGDLHEAEETSSE   88 (162)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHH-HTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHH
Confidence            467788888876 589999999999999999                  77888999999999877 7999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536          216 AVHSAPDDCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       216 AL~l~P~da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      ||.++|+++.+++.+|.++...|++++|++.
T Consensus        89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~  119 (162)
T 3rkv_A           89 VLKREETNEKALFRRAKARIAAWKLDEAEED  119 (162)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHhcCCcchHHHHHHHHHHHHHhcHHHHHHH
Confidence            9999999999999999999999999999954

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.31  E-value=3.8e-12  Score=107.34  Aligned_cols=111  Identities=15%  Similarity=0.170  Sum_probs=99.5

Q ss_pred             CCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKA--------YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILA--------KPGDGNVLSMYGD  197 (266)
Q Consensus       134 ~~~eeA~~~y~rALel--------~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~l--------dP~da~al~nla~  197 (266)
                      +++++|+.+|++++++        +|....++.++|.++. ..|++++|+.+|++++.+        +|....++.++|.
T Consensus        99 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  177 (283)
T 3edt_B           99 GKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQ-NQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLAS  177 (283)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            6899999999999999        5777889999999876 589999999999999999        7888899999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHh-------------------------------------------------CCCCHHHHH
Q 024536          198 LIWINHKDAPRAKSYFDRAVHS-------------------------------------------------APDDCHVLA  228 (266)
Q Consensus       198 ll~~~~gd~deAi~~~ekAL~l-------------------------------------------------~P~da~a~~  228 (266)
                      ++.. .|++++|+.+|++++.+                                                 .|..+.++.
T Consensus       178 ~~~~-~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (283)
T 3edt_B          178 CYLK-QGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLR  256 (283)
T ss_dssp             HHHH-HTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHH
T ss_pred             HHHH-cCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            9877 79999999999999997                                                 255567889


Q ss_pred             HHHHHHHHcCCccccccc
Q 024536          229 SYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       229 ~lA~ll~~~G~~~eA~~~  246 (266)
                      .+|.++...|++++|++.
T Consensus       257 ~la~~~~~~g~~~~A~~~  274 (283)
T 3edt_B          257 SLGALYRRQGKLEAAHTL  274 (283)
T ss_dssp             HHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHH
Confidence            999999999999999854

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.31  E-value=6.7e-12  Score=94.21  Aligned_cols=94  Identities=12%  Similarity=0.106  Sum_probs=86.0

Q ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------H
Q 024536          152 EDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD-------C  224 (266)
Q Consensus       152 ~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~d-------a  224 (266)
                      ..+.+++++|.++. ..+++++|..+|++++..+|+++.++.++|.++.. .+++++|+.+|++++.+.|++       +
T Consensus         2 ~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~   79 (131)
T 1elr_A            2 KQALKEKELGNDAY-KKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE-KGDYNKCRELCEKAIEVGRENREDYRQIA   79 (131)
T ss_dssp             HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             hHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-hccHHHHHHHHHHHHhhccccchhHHHHH
Confidence            45678899998876 58999999999999999999999999999998876 799999999999999999987       8


Q ss_pred             HHHHHHHHHHHHcCCcccccccc
Q 024536          225 HVLASYARFLWDAGEEEDDDDGD  247 (266)
Q Consensus       225 ~a~~~lA~ll~~~G~~~eA~~~~  247 (266)
                      .++..+|.++...|++++|++..
T Consensus        80 ~~~~~la~~~~~~~~~~~A~~~~  102 (131)
T 1elr_A           80 KAYARIGNSYFKEEKYKDAIHFY  102 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHH
Confidence            99999999999999999999643

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.31  E-value=2.6e-11  Score=111.72  Aligned_cols=111  Identities=14%  Similarity=0.091  Sum_probs=94.2

Q ss_pred             CCHHHHHHHHHHHHHH---------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKA---------YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILA--------KPGDGNVLSMYG  196 (266)
Q Consensus       134 ~~~eeA~~~y~rALel---------~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~l--------dP~da~al~nla  196 (266)
                      |++++|+++|++|+++         +|....+|.|+|.+++ .+|++++|+.+|++|+.+        .++.+.++.+.|
T Consensus        65 G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~-~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g  143 (472)
T 4g1t_A           65 GQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYY-HMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEG  143 (472)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHH
Confidence            5899999999999997         7888899999999886 589999999999999987        356788999988


Q ss_pred             HHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCCcccccc
Q 024536          197 DLIWIN-HKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWD---AGEEEDDDD  245 (266)
Q Consensus       197 ~ll~~~-~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~---~G~~~eA~~  245 (266)
                      +++... ++++++|+.+|++|++++|+++.++..++.++..   .++.++|++
T Consensus       144 ~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~  196 (472)
T 4g1t_A          144 WTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAID  196 (472)
T ss_dssp             HHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHH
T ss_pred             HHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHH
Confidence            776553 3579999999999999999999999999988654   455666654

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.31  E-value=1.4e-11  Score=96.96  Aligned_cols=92  Identities=14%  Similarity=-0.067  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 024536          154 ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARF  233 (266)
Q Consensus       154 ~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~l  233 (266)
                      +..++++|..+. ..|++++|..+|++++.++|+++.++.++|.++.. .+++++|+.+|++++.++|+++.++..+|.+
T Consensus        13 ~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~   90 (166)
T 1a17_A           13 AEELKTQANDYF-KAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR-TECYGYALGDATRAIELDKKYIKGYYRRAAS   90 (166)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            567888888776 58999999999999999999999999999998876 8999999999999999999999999999999


Q ss_pred             HHHcCCcccccccc
Q 024536          234 LWDAGEEEDDDDGD  247 (266)
Q Consensus       234 l~~~G~~~eA~~~~  247 (266)
                      +...|++++|++.-
T Consensus        91 ~~~~~~~~~A~~~~  104 (166)
T 1a17_A           91 NMALGKFRAALRDY  104 (166)
T ss_dssp             HHHTTCHHHHHHHH
T ss_pred             HHHhccHHHHHHHH
Confidence            99999999999643

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.31  E-value=5.9e-12  Score=95.96  Aligned_cols=92  Identities=15%  Similarity=0.117  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHH
Q 024536          155 LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG---NVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD---CHVLA  228 (266)
Q Consensus       155 ~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da---~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~d---a~a~~  228 (266)
                      .+++++|..+. ..|++++|..+|++++..+|+++   .+++++|.+++. .|++++|+.+|++++..+|++   +.++.
T Consensus         3 ~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~~~   80 (129)
T 2xev_A            3 RTAYNVAFDAL-KNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYA-TRNFQLAEAQFRDLVSRYPTHDKAAGGLL   80 (129)
T ss_dssp             CCHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTSTTHHHHHH
T ss_pred             HHHHHHHHHHH-HhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHCCCCcccHHHHH
Confidence            35677888776 58999999999999999999999   899999998877 899999999999999999999   89999


Q ss_pred             HHHHHHHHcCCccccccccc
Q 024536          229 SYARFLWDAGEEEDDDDGDD  248 (266)
Q Consensus       229 ~lA~ll~~~G~~~eA~~~~~  248 (266)
                      .+|.++...|++++|++.-+
T Consensus        81 ~la~~~~~~g~~~~A~~~~~  100 (129)
T 2xev_A           81 KLGLSQYGEGKNTEAQQTLQ  100 (129)
T ss_dssp             HHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999996543

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.30  E-value=8.1e-12  Score=115.07  Aligned_cols=112  Identities=17%  Similarity=0.165  Sum_probs=93.8

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHH--cCC
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN------VLSMYGDLIWIN--HKD  205 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~------al~nla~ll~~~--~gd  205 (266)
                      +++++|+.+|+++++.+|+++.++.++|.++. ..|++++|..+|++++.++|+++.      ++.++|.++...  .|+
T Consensus       352 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  430 (514)
T 2gw1_A          352 NKFDDCETLFSEAKRKFPEAPEVPNFFAEILT-DKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVEN  430 (514)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTH
T ss_pred             CCHHHHHHHHHHHHHHcccCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCC
Confidence            67888888888888888888888888888775 578888888888888888888855      888888776431  588


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536          206 APRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       206 ~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      +++|+.+|++++.++|+++.++..+|.++...|++++|.+.
T Consensus       431 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  471 (514)
T 2gw1_A          431 FIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITL  471 (514)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHH
Confidence            88999999999999998888888889889988988888854

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.29  E-value=1.7e-11  Score=108.84  Aligned_cols=94  Identities=13%  Similarity=0.041  Sum_probs=88.8

Q ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 024536          151 PEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASY  230 (266)
Q Consensus       151 P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~l  230 (266)
                      |.++.++.++|..+. ..|++++|+.+|++|+.++|+++.+++++|.++.. .|++++|+.+|++|++++|+++.++..+
T Consensus         1 p~~a~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l   78 (281)
T 2c2l_A            1 SPSAQELKEQGNRLF-VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQQPEQALADCRRALELDGQSVKAHFFL   78 (281)
T ss_dssp             CCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred             ChhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            678899999999886 58999999999999999999999999999999876 8999999999999999999999999999


Q ss_pred             HHHHHHcCCccccccc
Q 024536          231 ARFLWDAGEEEDDDDG  246 (266)
Q Consensus       231 A~ll~~~G~~~eA~~~  246 (266)
                      |.++...|++++|++.
T Consensus        79 g~~~~~~g~~~~A~~~   94 (281)
T 2c2l_A           79 GQCQLEMESYDEAIAN   94 (281)
T ss_dssp             HHHHHHTTCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHH
Confidence            9999999999999953

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.27  E-value=4.4e-12  Score=116.86  Aligned_cols=110  Identities=15%  Similarity=0.147  Sum_probs=76.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+.+|+++++.+|.++.++.++|.++. ..|++++|..+|++++.++|+++.++.++|.++.. .|++++|+.+|
T Consensus       284 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~  361 (514)
T 2gw1_A          284 NDSTEYYNYFDKALKLDSNNSSVYYHRGQMNF-ILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYR-ENKFDDCETLF  361 (514)
T ss_dssp             SCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHH-HTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTT-TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            34566666666666666666666666666554 46777777777777777777777777777766654 67777777777


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCcccccc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDD  245 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~  245 (266)
                      ++++..+|+++.++..+|.++...|++++|++
T Consensus       362 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  393 (514)
T 2gw1_A          362 SEAKRKFPEAPEVPNFFAEILTDKNDFDKALK  393 (514)
T ss_dssp             HHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHcccCHHHHHHHHHHHHHCCCHHHHHH
Confidence            77777777777777777777777777777764

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.24  E-value=1.4e-10  Score=99.91  Aligned_cols=104  Identities=14%  Similarity=0.179  Sum_probs=63.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HcCCH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEI----RGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI---NHKDA  206 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~----~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~---~~gd~  206 (266)
                      +++++|+.+|+++++  |+++.+++++|.++. .    .+++++|..+|++|++++  ++.+++++|.++..   ..+++
T Consensus        20 ~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~-~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~   94 (273)
T 1ouv_A           20 KDFTQAKKYFEKACD--LKENSGCFNLGVLYY-QGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNT   94 (273)
T ss_dssp             TCHHHHHHHHHHHHH--TTCHHHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCH
T ss_pred             CCHHHHHHHHHHHHH--CCCHHHHHHHHHHHH-cCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCH
Confidence            356666666666666  566666666666553 4    566666666666666654  56666666655532   04566


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCccccc
Q 024536          207 PRAKSYFDRAVHSAPDDCHVLASYARFLWD----AGEEEDDD  244 (266)
Q Consensus       207 deAi~~~ekAL~l~P~da~a~~~lA~ll~~----~G~~~eA~  244 (266)
                      ++|+.+|++|++.  +++.++.++|.++..    .+++++|+
T Consensus        95 ~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~  134 (273)
T 1ouv_A           95 NKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAV  134 (273)
T ss_dssp             HHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             HHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHH
Confidence            6666666666665  356666666666666    66666665

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.23  E-value=9.2e-11  Score=103.37  Aligned_cols=108  Identities=9%  Similarity=0.044  Sum_probs=94.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPED------ALVLANYAKFLKEIRGDFVKAEEYCGRAI---LAKPGDG----NVLSMYGDLIW  200 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~------~~al~nlA~~L~~~~gd~e~A~~~~erAL---~ldP~da----~al~nla~ll~  200 (266)
                      +++++|+.+|++|+++.+..      ..+++++|.++. ..|++++|+.+|++|+   ...|++.    .+++++|.++.
T Consensus       129 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~-~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~  207 (293)
T 2qfc_A          129 VDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA-ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY  207 (293)
T ss_dssp             SCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHH
Confidence            58999999999999887655      568999999886 5899999999999999   5677754    68999999887


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCcccc
Q 024536          201 INHKDAPRAKSYFDRAVHSAPD------DCHVLASYARFLWDAGEEEDD  243 (266)
Q Consensus       201 ~~~gd~deAi~~~ekAL~l~P~------da~a~~~lA~ll~~~G~~~eA  243 (266)
                      . .|++++|+.+|++|+.+.++      -+.++.++|.++...|++++|
T Consensus       208 ~-~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A  255 (293)
T 2qfc_A          208 L-DSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAE  255 (293)
T ss_dssp             H-TTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHH
T ss_pred             H-HhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHH
Confidence            6 89999999999999998753      277899999999999999999

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.23  E-value=1.1e-11  Score=106.34  Aligned_cols=111  Identities=19%  Similarity=0.261  Sum_probs=99.6

Q ss_pred             CCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKA--------YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAK--------PGDGNVLSMYGD  197 (266)
Q Consensus       134 ~~~eeA~~~y~rALel--------~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ld--------P~da~al~nla~  197 (266)
                      +++++|+.+|++++++        +|..+.++.++|.++. ..|++++|+.+|++++.+.        |....++.++|.
T Consensus        83 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~  161 (311)
T 3nf1_A           83 NKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYG-KRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLAL  161 (311)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-HcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence            6899999999999998        4666789999999876 5899999999999999984        666788999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCccccccc
Q 024536          198 LIWINHKDAPRAKSYFDRAVHS--------APDDCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       198 ll~~~~gd~deAi~~~ekAL~l--------~P~da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      ++.. .|++++|+.+|++++.+        .|..+.++..+|.++...|++++|++.
T Consensus       162 ~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  217 (311)
T 3nf1_A          162 LCQN-QGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETL  217 (311)
T ss_dssp             HHHT-TTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHH-cCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            8876 89999999999999999        778888999999999999999999854

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.22  E-value=2e-11  Score=94.02  Aligned_cols=111  Identities=14%  Similarity=0.111  Sum_probs=94.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDA------LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD------GNVLSMYGDLIWI  201 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~------~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d------a~al~nla~ll~~  201 (266)
                      +++++|+.+|++++++.+...      .++.++|.++. ..|++++|..+|++|+.+.+..      +.++.++|.++..
T Consensus        23 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~  101 (164)
T 3ro3_A           23 GNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYI-FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL  101 (164)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            689999999999999976533      47888998876 5899999999999999987654      6788899998876


Q ss_pred             HcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCccccccc
Q 024536          202 NHKDAPRAKSYFDRAVHSAPD------DCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       202 ~~gd~deAi~~~ekAL~l~P~------da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                       .+++++|+.+|++++.+.+.      .+.++..+|.+++..|++++|++.
T Consensus       102 -~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  151 (164)
T 3ro3_A          102 -LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF  151 (164)
T ss_dssp             -TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             -HhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHH
Confidence             89999999999999988542      256788999999999999999854

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.22  E-value=1.4e-11  Score=105.82  Aligned_cols=112  Identities=14%  Similarity=0.208  Sum_probs=99.9

Q ss_pred             CCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAY--------PEDALVLANYAKFLKEIRGDFVKAEEYCGRAILA--------KPGDGNVLSMYGD  197 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~--------P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~l--------dP~da~al~nla~  197 (266)
                      +++++|+.+|++++++.        |....++.++|.++. ..|++++|+.+|++++.+        +|..+.++.++|.
T Consensus       125 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~  203 (311)
T 3nf1_A          125 GKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQ-NQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLAS  203 (311)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            68999999999999985        666788999999876 589999999999999999        7888889999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHh-------------------------------------------------CCCCHHHHH
Q 024536          198 LIWINHKDAPRAKSYFDRAVHS-------------------------------------------------APDDCHVLA  228 (266)
Q Consensus       198 ll~~~~gd~deAi~~~ekAL~l-------------------------------------------------~P~da~a~~  228 (266)
                      ++.. .|++++|+.+|++++.+                                                 .|..+.++.
T Consensus       204 ~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  282 (311)
T 3nf1_A          204 CYLK-QGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLK  282 (311)
T ss_dssp             HHHH-HTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHH
T ss_pred             HHHH-cCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHH
Confidence            9877 79999999999999985                                                 466778899


Q ss_pred             HHHHHHHHcCCcccccccc
Q 024536          229 SYARFLWDAGEEEDDDDGD  247 (266)
Q Consensus       229 ~lA~ll~~~G~~~eA~~~~  247 (266)
                      .+|.++...|++++|++..
T Consensus       283 ~la~~~~~~g~~~~A~~~~  301 (311)
T 3nf1_A          283 NLGALYRRQGKFEAAETLE  301 (311)
T ss_dssp             HHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHH
Confidence            9999999999999998643

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.21  E-value=4.7e-12  Score=97.05  Aligned_cols=78  Identities=18%  Similarity=0.180  Sum_probs=70.8

Q ss_pred             cCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536          168 RGDFVKAEEYCGRAILA---KPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDD  244 (266)
Q Consensus       168 ~gd~e~A~~~~erAL~l---dP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~  244 (266)
                      .|++++|+.+|++||++   +|+++.++.++|.++.. .|++++|+.+|++|++++|+++.++.++|.++...|++++|+
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRT-LGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            58899999999999999   69999999999999877 899999999999999999999999999999999999999999


Q ss_pred             cc
Q 024536          245 DG  246 (266)
Q Consensus       245 ~~  246 (266)
                      +.
T Consensus        82 ~~   83 (117)
T 3k9i_A           82 EL   83 (117)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.20  E-value=4.6e-11  Score=113.81  Aligned_cols=113  Identities=16%  Similarity=0.145  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH------cCCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHHH
Q 024536          137 ESMDVYYQEMIKAYPEDALVLANYAKFLKEI------RGDFV-------KAEEYCGRAIL-AKPGDGNVLSMYGDLIWIN  202 (266)
Q Consensus       137 eeA~~~y~rALel~P~~~~al~nlA~~L~~~------~gd~e-------~A~~~~erAL~-ldP~da~al~nla~ll~~~  202 (266)
                      .+|+.+|++||..+|.++.+|+++|.++...      .|+++       +|...|++|++ ++|+++.+|..++.++.. 
T Consensus       255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~-  333 (530)
T 2ooe_A          255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES-  333 (530)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh-
Confidence            5888999999999999999999999987532      68877       99999999998 899999999999988765 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCccccccccccc
Q 024536          203 HKDAPRAKSYFDRAVHSAPDDC-HVLASYARFLWDAGEEEDDDDGDDQE  250 (266)
Q Consensus       203 ~gd~deAi~~~ekAL~l~P~da-~a~~~lA~ll~~~G~~~eA~~~~~~~  250 (266)
                      .|++++|+.+|++|++++|+++ .+|..++.++...|+.++|.+..+..
T Consensus       334 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~A  382 (530)
T 2ooe_A          334 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA  382 (530)
T ss_dssp             TTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            8999999999999999999986 69999999999999999998654433

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.20  E-value=2.5e-11  Score=109.63  Aligned_cols=104  Identities=15%  Similarity=0.216  Sum_probs=95.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHc
Q 024536          134 KESESMDVYYQEMIKAYPEDA----LVLANYAKFLKEIRGDFVKAEEYCGRAILA------KPGDGNVLSMYGDLIWINH  203 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~----~al~nlA~~L~~~~gd~e~A~~~~erAL~l------dP~da~al~nla~ll~~~~  203 (266)
                      +++++|+.+|+++++++|+++    .+++++|.++. ..|++++|+.+|++|+.+      +|..+.++.++|.++.. .
T Consensus        62 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~-~  139 (411)
T 4a1s_A           62 GDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYF-YLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKV-M  139 (411)
T ss_dssp             TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-T
T ss_pred             CcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHH-C
Confidence            689999999999999999997    58889998876 589999999999999998      68888999999998876 8


Q ss_pred             CCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCC
Q 024536          204 KDAPRAKSYFDRAVHS------APDDCHVLASYARFLWDAGE  239 (266)
Q Consensus       204 gd~deAi~~~ekAL~l------~P~da~a~~~lA~ll~~~G~  239 (266)
                      |++++|+.+|++|+.+      .|..+.++..+|.++...|+
T Consensus       140 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  181 (411)
T 4a1s_A          140 GRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK  181 (411)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence            9999999999999999      67778899999999999999

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.20  E-value=1.1e-10  Score=103.62  Aligned_cols=97  Identities=15%  Similarity=0.192  Sum_probs=85.7

Q ss_pred             HHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH-----------------
Q 024536          148 KAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAK-----------------  210 (266)
Q Consensus       148 el~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi-----------------  210 (266)
                      ..-|+++.+++.+|..+. ..|++++|+..|+++++++|+++.+++++|.++.. .|++++|+                 
T Consensus       111 ~~lp~~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~-~g~~~~A~~~l~~~~~~~p~~~~~~  188 (287)
T 3qou_A          111 XVLPREEELXAQQAMQLM-QESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIA-LNRSEDAEAVLXTIPLQDQDTRYQG  188 (287)
T ss_dssp             HHSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH-TTCHHHHHHHHTTSCGGGCSHHHHH
T ss_pred             HHcCCchhhHHHHHHHHH-hCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHH-CCCHHHHHHHHHhCchhhcchHHHH
Confidence            334999999999999876 58999999999999999999999999999998866 78877765                 


Q ss_pred             -----------------HHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536          211 -----------------SYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       211 -----------------~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                                       ..|+++++++|+++.++.++|.++...|++++|+++
T Consensus       189 ~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~  241 (287)
T 3qou_A          189 LVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALEL  241 (287)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHH
Confidence                             456666888999999999999999999999999964

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.20  E-value=4.2e-11  Score=114.11  Aligned_cols=115  Identities=16%  Similarity=0.147  Sum_probs=91.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDA-LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY  212 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~-~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~  212 (266)
                      +++++|...|+++++++|.++ .+|.+++.++. ..|++++|..+|++|+...|.+..++...+.+.+...|++++|..+
T Consensus       335 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~  413 (530)
T 2ooe_A          335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR-RAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI  413 (530)
T ss_dssp             TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred             CCHHHHHHHHHHHhCccccCchHHHHHHHHHHH-HhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHH
Confidence            577888888888888888775 57888877664 4577788888888888877777766666665544447899999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCcccccccccc
Q 024536          213 FDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDDQ  249 (266)
Q Consensus       213 ~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~~  249 (266)
                      |++|++..|+++.+|..++.++...|+.++|.+..+.
T Consensus       414 ~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~  450 (530)
T 2ooe_A          414 FELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFER  450 (530)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHH
Confidence            9999999999999999999999999999988865443

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.19  E-value=4.5e-10  Score=96.76  Aligned_cols=106  Identities=13%  Similarity=0.061  Sum_probs=69.3

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HcCC
Q 024536          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEI----RGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI---NHKD  205 (266)
Q Consensus       133 ~~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~----~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~---~~gd  205 (266)
                      .+++++|+.+|++|++.+  ++.+++++|.++. .    .+++++|+.+|++|+..+  ++.+++++|.++..   ..++
T Consensus        55 ~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~-~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~  129 (273)
T 1ouv_A           55 EKNLKKAASFYAKACDLN--YSNGCHLLGNLYY-SGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRD  129 (273)
T ss_dssp             CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCC
T ss_pred             CCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHh-CCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccC
Confidence            356677777777777664  6677777776654 4    567777777777777663  66777777766543   0466


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCcccccc
Q 024536          206 APRAKSYFDRAVHSAPDDCHVLASYARFLWD----AGEEEDDDD  245 (266)
Q Consensus       206 ~deAi~~~ekAL~l~P~da~a~~~lA~ll~~----~G~~~eA~~  245 (266)
                      +++|+.+|++|++++  ++.++.++|.++..    .+++++|++
T Consensus       130 ~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~  171 (273)
T 1ouv_A          130 FKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALA  171 (273)
T ss_dssp             HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred             HHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence            777777777777664  45666667766666    666666663

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.18  E-value=3.7e-11  Score=105.95  Aligned_cols=110  Identities=9%  Similarity=0.035  Sum_probs=92.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDA------LVLANYAKFLKEIRGDFVKAEEYCGRAILA-------KPGDGNVLSMYGDLIW  200 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~------~al~nlA~~L~~~~gd~e~A~~~~erAL~l-------dP~da~al~nla~ll~  200 (266)
                      +++++|+.+|++|+++.+...      .+++++|.++. ..|++++|+.+|++|+..       .+..+.+++++|.++.
T Consensus       129 ~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~  207 (293)
T 3u3w_A          129 VDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA-ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY  207 (293)
T ss_dssp             SCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence            589999999999999765433      47899998876 589999999999999952       2334568899999987


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCc-ccccc
Q 024536          201 INHKDAPRAKSYFDRAVHSAPDD------CHVLASYARFLWDAGEE-EDDDD  245 (266)
Q Consensus       201 ~~~gd~deAi~~~ekAL~l~P~d------a~a~~~lA~ll~~~G~~-~eA~~  245 (266)
                      . .|++++|+.++++|+++.+..      +.++.++|.++...|+. ++|++
T Consensus       208 ~-~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~  258 (293)
T 3u3w_A          208 L-DSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIED  258 (293)
T ss_dssp             H-TTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             H-HhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence            7 899999999999999998655      78999999999999964 88874

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.18  E-value=3.1e-11  Score=88.81  Aligned_cols=67  Identities=18%  Similarity=0.178  Sum_probs=46.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 024536          159 NYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN-VLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVL  227 (266)
Q Consensus       159 nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~-al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~  227 (266)
                      +.|..+. ..|++++|+.+|+++++.+|+++. +++++|.++.. .|++++|+.+|++|++++|+++.++
T Consensus         5 ~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~   72 (99)
T 2kc7_A            5 KTIKELI-NQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRK-LGDWQKALNNYQSAIELNPDSPALQ   72 (99)
T ss_dssp             HHHHHHH-HHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred             HHHHHHH-HcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCcHHHH
Confidence            4454444 357777777777777777777777 77777776655 5677777777777777777777666

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.18  E-value=4.4e-11  Score=108.55  Aligned_cols=111  Identities=14%  Similarity=0.102  Sum_probs=97.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPED-------ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG------NVLSMYGDLIW  200 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~-------~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da------~al~nla~ll~  200 (266)
                      +++++|+.+|++|+++.+..       +.++.++|.++. ..|++++|+.+|++|+.+.+...      .++.++|.++.
T Consensus       157 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~  235 (383)
T 3ulq_A          157 KQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFL-DLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKN  235 (383)
T ss_dssp             TCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence            68999999999999995544       468899998876 58999999999999999865443      58999999887


Q ss_pred             HHcCCHHHHHHHHHHHHH-----hC-CCCHHHHHHHHHHHHHcCCccccccc
Q 024536          201 INHKDAPRAKSYFDRAVH-----SA-PDDCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       201 ~~~gd~deAi~~~ekAL~-----l~-P~da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      . .|++++|+.+|++|++     .+ |..+.++.++|.++...|++++|++.
T Consensus       236 ~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  286 (383)
T 3ulq_A          236 S-QSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEY  286 (383)
T ss_dssp             H-TTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             H-CCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            6 8999999999999999     57 88889999999999999999999853

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.14  E-value=1.9e-10  Score=97.55  Aligned_cols=111  Identities=9%  Similarity=-0.004  Sum_probs=91.8

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHH---c
Q 024536          132 SGKESESMDVYYQEMIKAYPEDALVLANYAKFLKE---IRGDFVKAEEYCGRAILAKP--GDGNVLSMYGDLIWIN---H  203 (266)
Q Consensus       132 ~~~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~---~~gd~e~A~~~~erAL~ldP--~da~al~nla~ll~~~---~  203 (266)
                      ...++++|+.+|++|++  ++++.+++++|.++..   ..+++++|+.+|++|++..|  +++.+++++|.++...   .
T Consensus        65 ~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~  142 (212)
T 3rjv_A           65 QQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGP  142 (212)
T ss_dssp             TSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSS
T ss_pred             CCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCC
Confidence            44689999999999954  6899999999987742   15799999999999999988  4599999999887652   4


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC------Ccccccc
Q 024536          204 KDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAG------EEEDDDD  245 (266)
Q Consensus       204 gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G------~~~eA~~  245 (266)
                      +|+++|+.+|++|+++ |+++.++.++|.+|....      +.++|++
T Consensus       143 ~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~  189 (212)
T 3rjv_A          143 EDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALH  189 (212)
T ss_dssp             CCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHH
Confidence            6899999999999998 778889999999888752      5666663

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.14  E-value=5.1e-11  Score=96.91  Aligned_cols=110  Identities=10%  Similarity=0.096  Sum_probs=92.0

Q ss_pred             CCHHHHHHHHHHHHH------HCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCC----HHHHHHHHHHHH
Q 024536          134 KESESMDVYYQEMIK------AYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILA---KPGD----GNVLSMYGDLIW  200 (266)
Q Consensus       134 ~~~eeA~~~y~rALe------l~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~l---dP~d----a~al~nla~ll~  200 (266)
                      +++++|+.+|+++++      ..|..+.++.++|.++. ..|++++|+.+|++|+.+   .+++    +.++.++|.++.
T Consensus        40 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~  118 (203)
T 3gw4_A           40 DRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVER-MAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVAL  118 (203)
T ss_dssp             TCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHH
Confidence            689999999999999      45566788999998876 589999999999999998   4533    567889998887


Q ss_pred             HHcCCHHHHHHHHHHHHHhCC--CCH----HHHHHHHHHHHHcCCcccccc
Q 024536          201 INHKDAPRAKSYFDRAVHSAP--DDC----HVLASYARFLWDAGEEEDDDD  245 (266)
Q Consensus       201 ~~~gd~deAi~~~ekAL~l~P--~da----~a~~~lA~ll~~~G~~~eA~~  245 (266)
                      . .|++++|+.+|++++.+.+  .+.    .++..+|.+++..|++++|++
T Consensus       119 ~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  168 (203)
T 3gw4_A          119 H-FGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQ  168 (203)
T ss_dssp             H-HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             H-hCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence            6 7999999999999997743  232    346899999999999999984

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.13  E-value=4.9e-11  Score=106.38  Aligned_cols=113  Identities=11%  Similarity=0.073  Sum_probs=90.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPED------ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD------GNVLSMYGDLIWI  201 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~------~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d------a~al~nla~ll~~  201 (266)
                      +++++|+.+|++|+++.+..      +.++.++|.++. . |++++|+.+|++|+.+.|..      +.++.++|.++..
T Consensus        90 g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~-~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~  167 (307)
T 2ifu_A           90 QRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLME-P-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVR  167 (307)
T ss_dssp             TCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT-T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-c-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Confidence            57889999999999885432      467888888775 4 99999999999999988754      5788889988866


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCcccccccccc
Q 024536          202 NHKDAPRAKSYFDRAVHSAPDD------CHVLASYARFLWDAGEEEDDDDGDDQ  249 (266)
Q Consensus       202 ~~gd~deAi~~~ekAL~l~P~d------a~a~~~lA~ll~~~G~~~eA~~~~~~  249 (266)
                       .|++++|+.+|++|+.+.|++      +.++..++.++..+|++++|++..+.
T Consensus       168 -~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~  220 (307)
T 2ifu_A          168 -QQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE  220 (307)
T ss_dssp             -TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             -cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence             789999999999999987754      34677888888888999999865433

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.13  E-value=4.9e-11  Score=108.21  Aligned_cols=111  Identities=14%  Similarity=0.000  Sum_probs=95.6

Q ss_pred             CCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKA------YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG-------DGNVLSMYGDLIW  200 (266)
Q Consensus       134 ~~~eeA~~~y~rALel------~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~-------da~al~nla~ll~  200 (266)
                      +++++|+.+|++|+++      .+..+.+++++|.++. ..|++++|..+|++|+.+.+.       .+.++.++|.++.
T Consensus       117 g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~  195 (383)
T 3ulq_A          117 REYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYY-YMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFL  195 (383)
T ss_dssp             TCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHH
Confidence            6899999999999998      3335689999999886 589999999999999998443       3568999999887


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCccccccc
Q 024536          201 INHKDAPRAKSYFDRAVHSAPDDC------HVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       201 ~~~gd~deAi~~~ekAL~l~P~da------~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      . .|++++|+.+|++|+++.|...      .++.++|.++...|++++|++.
T Consensus       196 ~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~  246 (383)
T 3ulq_A          196 D-LKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPY  246 (383)
T ss_dssp             H-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             H-hcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            6 8999999999999999976433      4899999999999999999954

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.12  E-value=3.3e-11  Score=89.18  Aligned_cols=80  Identities=14%  Similarity=0.099  Sum_probs=72.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD------GNVLSMYGDLIWINHKDAP  207 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d------a~al~nla~ll~~~~gd~d  207 (266)
                      +++++|+.+|+++++++|+++.+++++|.++. ..|++++|+.+|++|++++|++      ..+++.+|.++.. .|+++
T Consensus        18 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~   95 (111)
T 2l6j_A           18 GLYREAVHCYDQLITAQPQNPVGYSNKAMALI-KLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGA-VGSVQ   95 (111)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHH-HHCCC
T ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHH-HHhHh
Confidence            68999999999999999999999999999886 5899999999999999999999      8999999988866 57777


Q ss_pred             HHHHHHHH
Q 024536          208 RAKSYFDR  215 (266)
Q Consensus       208 eAi~~~ek  215 (266)
                      +|+..|++
T Consensus        96 ~a~~~~~~  103 (111)
T 2l6j_A           96 IPVVEVDE  103 (111)
T ss_dssp             CCSSSSSS
T ss_pred             hhHhHHHH
Confidence            77766654

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.12  E-value=9e-10  Score=96.99  Aligned_cols=111  Identities=9%  Similarity=-0.033  Sum_probs=93.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDAL------VLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD------GNVLSMYGDLIWI  201 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~------al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d------a~al~nla~ll~~  201 (266)
                      +++++|+.+|+++++..|....      .++.+|.++. ..|++++|+.+|++|+.+.+..      ..++.++|.++..
T Consensus        89 ~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~  167 (293)
T 2qfc_A           89 KRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVL-KKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAE  167 (293)
T ss_dssp             TCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHH-TSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence            5899999999999999988763      3455666554 4689999999999999876654      6789999998876


Q ss_pred             HcCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHcCCccccccc
Q 024536          202 NHKDAPRAKSYFDRAV---HSAPDDC----HVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       202 ~~gd~deAi~~~ekAL---~l~P~da----~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                       .|++++|+.+|++|+   ...|++.    .++.++|.++...|++++|++.
T Consensus       168 -~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~  218 (293)
T 2qfc_A          168 -NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQ  218 (293)
T ss_dssp             -TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             -cCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHH
Confidence             899999999999999   6677754    5889999999999999999953

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.12  E-value=7.4e-11  Score=105.06  Aligned_cols=110  Identities=14%  Similarity=0.087  Sum_probs=91.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDAL------VLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD------GNVLSMYGDLIWI  201 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~------al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d------a~al~nla~ll~~  201 (266)
                      +++++|+.+|++++++.|....      ++.++|.++. ..|++++|+.+|++|+.+.|..      +.++.++|.++..
T Consensus       201 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  279 (406)
T 3sf4_A          201 GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI-FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL  279 (406)
T ss_dssp             TBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHH
Confidence            5789999999999988776544      8888888775 5799999999999999887766      7788888888766


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCcccccc
Q 024536          202 NHKDAPRAKSYFDRAVHSAPDD------CHVLASYARFLWDAGEEEDDDD  245 (266)
Q Consensus       202 ~~gd~deAi~~~ekAL~l~P~d------a~a~~~lA~ll~~~G~~~eA~~  245 (266)
                       .|++++|+.+|++|+.+.+..      +.++..+|.++...|++++|++
T Consensus       280 -~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  328 (406)
T 3sf4_A          280 -LQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH  328 (406)
T ss_dssp             -TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             -hCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence             789999999999999886654      6678889999999999988885

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.12  E-value=9.3e-11  Score=100.47  Aligned_cols=104  Identities=13%  Similarity=0.187  Sum_probs=92.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHc
Q 024536          134 KESESMDVYYQEMIKAYPEDA----LVLANYAKFLKEIRGDFVKAEEYCGRAILA------KPGDGNVLSMYGDLIWINH  203 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~----~al~nlA~~L~~~~gd~e~A~~~~erAL~l------dP~da~al~nla~ll~~~~  203 (266)
                      +++++|+.+|+++++++|+++    .++.++|.++. ..|++++|+.+|++|+.+      .|..+.++..+|.++.. .
T Consensus        19 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~-~   96 (338)
T 3ro2_A           19 GDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYF-YLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKV-L   96 (338)
T ss_dssp             TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-T
T ss_pred             ccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH-c
Confidence            689999999999999999995    67888998876 589999999999999998      56667899999998876 8


Q ss_pred             CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC
Q 024536          204 KDAPRAKSYFDRAVHSAPDD------CHVLASYARFLWDAGE  239 (266)
Q Consensus       204 gd~deAi~~~ekAL~l~P~d------a~a~~~lA~ll~~~G~  239 (266)
                      |++++|+.+|++++.+.|..      +.++..+|.++...|+
T Consensus        97 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~  138 (338)
T 3ro2_A           97 GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK  138 (338)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence            99999999999999997744      3488899999999999

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.10  E-value=7.4e-10  Score=109.01  Aligned_cols=108  Identities=11%  Similarity=0.029  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-
Q 024536          136 SESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGD----------FVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHK-  204 (266)
Q Consensus       136 ~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd----------~e~A~~~~erAL~ldP~da~al~nla~ll~~~~g-  204 (266)
                      .++|+++|.++|+++|++..+|++.+.++.. .++          +++|.+++++||+.+|.+..+|++.++++.. .+ 
T Consensus        45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~-l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~-l~~  122 (567)
T 1dce_A           45 DESVLELTSQILGANPDFATLWNCRREVLQH-LETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR-LPE  122 (567)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-CSS
T ss_pred             CHHHHHHHHHHHHHCchhHHHHHHHHHHHHh-cccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-ccc
Confidence            4799999999999999999999999998864 455          9999999999999999999999999998866 67 


Q ss_pred             -CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-Ccccccc
Q 024536          205 -DAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAG-EEEDDDD  245 (266)
Q Consensus       205 -d~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G-~~~eA~~  245 (266)
                       ++++|+++++++++++|.+..+|...++++...+ .+++|++
T Consensus       123 ~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~  165 (567)
T 1dce_A          123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELA  165 (567)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHH
Confidence             6799999999999999999999999999999999 6666664

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.10  E-value=1.6e-10  Score=97.99  Aligned_cols=107  Identities=11%  Similarity=0.139  Sum_probs=91.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HcCCH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRG----DFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI---NHKDA  206 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~g----d~e~A~~~~erAL~ldP~da~al~nla~ll~~---~~gd~  206 (266)
                      +++++|+.+|++|++.  +++.+++++|.++..  +    ++++|..+|++|+  +++++.+++++|.++..   ..+|+
T Consensus        32 ~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~--~g~~~~~~~A~~~~~~A~--~~g~~~a~~~Lg~~y~~g~g~~~d~  105 (212)
T 3rjv_A           32 GDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR--NPQQADYPQARQLAEKAV--EAGSKSGEIVLARVLVNRQAGATDV  105 (212)
T ss_dssp             TCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS--STTSCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHTCGGGSSCCH
T ss_pred             CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc--CCCCCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCccCH
Confidence            6899999999999875  689999999988753  6    8999999999995  46899999999988753   15799


Q ss_pred             HHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH----cCCccccccc
Q 024536          207 PRAKSYFDRAVHSAP--DDCHVLASYARFLWD----AGEEEDDDDG  246 (266)
Q Consensus       207 deAi~~~ekAL~l~P--~da~a~~~lA~ll~~----~G~~~eA~~~  246 (266)
                      ++|+.+|++|++..|  +++.++.++|.+|..    .+++++|++.
T Consensus       106 ~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~  151 (212)
T 3rjv_A          106 AHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY  151 (212)
T ss_dssp             HHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence            999999999999988  458999999999999    7778888743

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.10  E-value=9.7e-11  Score=104.45  Aligned_cols=110  Identities=16%  Similarity=0.173  Sum_probs=94.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPED------ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG--D----GNVLSMYGDLIWI  201 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~------~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~--d----a~al~nla~ll~~  201 (266)
                      +++++|+.+|++|+++.+..      +.++.++|.++. ..|++++|+.+|++|+.+.+.  +    +.++.++|.++..
T Consensus        50 g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~  128 (307)
T 2ifu_A           50 KQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLK-DLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP  128 (307)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc
Confidence            68999999999999997643      568888998775 589999999999999998543  2    4678899988743


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCccccccc
Q 024536          202 NHKDAPRAKSYFDRAVHSAPDD------CHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       202 ~~gd~deAi~~~ekAL~l~P~d------a~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                        |++++|+.+|++|+++.|..      +.++.++|.++..+|++++|++.
T Consensus       129 --g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~  177 (307)
T 2ifu_A          129 --LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAAS  177 (307)
T ss_dssp             --TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             --CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence              99999999999999998854      56889999999999999999964

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.10  E-value=1.6e-10  Score=102.93  Aligned_cols=104  Identities=13%  Similarity=0.187  Sum_probs=92.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHc
Q 024536          134 KESESMDVYYQEMIKAYPEDA----LVLANYAKFLKEIRGDFVKAEEYCGRAILA------KPGDGNVLSMYGDLIWINH  203 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~----~al~nlA~~L~~~~gd~e~A~~~~erAL~l------dP~da~al~nla~ll~~~~  203 (266)
                      +++++|+.+|+++++++|+++    .++.++|.++. ..|++++|..+|++|+.+      .|..+.++.++|.++.. .
T Consensus        23 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~  100 (406)
T 3sf4_A           23 GDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYF-YLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKV-L  100 (406)
T ss_dssp             TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-T
T ss_pred             ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH-c
Confidence            689999999999999999995    67889998876 589999999999999998      45667899999998876 8


Q ss_pred             CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC
Q 024536          204 KDAPRAKSYFDRAVHSAPDD------CHVLASYARFLWDAGE  239 (266)
Q Consensus       204 gd~deAi~~~ekAL~l~P~d------a~a~~~lA~ll~~~G~  239 (266)
                      |++++|+.+|++|+.+.|..      +.++..+|.++...|+
T Consensus       101 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  142 (406)
T 3sf4_A          101 GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK  142 (406)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence            99999999999999998753      5589999999999999

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.09  E-value=1.9e-11  Score=111.67  Aligned_cols=106  Identities=10%  Similarity=-0.086  Sum_probs=92.7

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHHcC
Q 024536          142 YYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG-----------------NVLSMYGDLIWINHK  204 (266)
Q Consensus       142 ~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da-----------------~al~nla~ll~~~~g  204 (266)
                      .+...++..+..+..+.++|..++ ..+++++|+.+|++||.++|++.                 .+|+++|.++.. .+
T Consensus       167 ~~~~~~~~~~~~a~~~~~~g~~~~-~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~-~g  244 (338)
T 2if4_A          167 RSDMTVEERIGAADRRKMDGNSLF-KEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIK-LK  244 (338)
T ss_dssp             TTBCCHHHHHHHHHHHHHHHHHTC-SSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHT-TT
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHH-cC
Confidence            444555566667788999998876 57999999999999999999988                 489999998876 89


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccccccc
Q 024536          205 DAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDDQ  249 (266)
Q Consensus       205 d~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~~  249 (266)
                      ++++|+.+|++|++++|+++.+++++|.++..+|++++|++..+.
T Consensus       245 ~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~  289 (338)
T 2if4_A          245 RYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRK  289 (338)
T ss_dssp             CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999965433

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.09  E-value=2.5e-10  Score=92.74  Aligned_cols=110  Identities=11%  Similarity=0.043  Sum_probs=92.7

Q ss_pred             CCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHHcCCH
Q 024536          134 KESESMDVYYQEMIKAYP-EDALVLANYAKFLKEIRGDFVKAEEYCGRAIL------AKPGDGNVLSMYGDLIWINHKDA  206 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P-~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~------ldP~da~al~nla~ll~~~~gd~  206 (266)
                      +++++|++.++.... +| ..+.++.++|.++. ..|++++|+.+|++|+.      ..|..+.++.++|.++.. .|++
T Consensus         6 g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~   82 (203)
T 3gw4_A            6 HDYALAERQAQALLA-HPATASGARFMLGYVYA-FMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERM-AGNW   82 (203)
T ss_dssp             -CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH-TTCH
T ss_pred             ccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH-cCCH
Confidence            689999996665554 55 67889999998876 58999999999999999      556677899999998876 8999


Q ss_pred             HHHHHHHHHHHHh---CCCC----HHHHHHHHHHHHHcCCccccccc
Q 024536          207 PRAKSYFDRAVHS---APDD----CHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       207 deAi~~~ekAL~l---~P~d----a~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      ++|+.+|++|+.+   .+++    +.++.++|.+++..|++++|++.
T Consensus        83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~  129 (203)
T 3gw4_A           83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQE  129 (203)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            9999999999999   4533    45788999999999999999853

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.08  E-value=4e-10  Score=85.33  Aligned_cols=74  Identities=11%  Similarity=0.019  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536          172 VKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       172 e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      ++|+.+|+++++.+|+++.+++++|.++.. .|++++|+.+|++++.++|+++.++..+|.++...|++++|++.
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~   75 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYAE-HEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQA   75 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence            368899999999999999999999998876 89999999999999999999999999999999999999999853

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.07  E-value=1.5e-09  Score=79.54  Aligned_cols=81  Identities=14%  Similarity=0.132  Sum_probs=73.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDAL-VLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY  212 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~-al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~  212 (266)
                      +++++|+.+|+++++.+|+++. +++++|.++. ..|++++|+.+|++|++++|+++.++.+         +.+.+|+.+
T Consensus        14 ~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~---------~~~~~a~~~   83 (99)
T 2kc7_A           14 GDIENALQALEEFLQTEPVGKDEAYYLMGNAYR-KLGDWQKALNNYQSAIELNPDSPALQAR---------KMVMDILNF   83 (99)
T ss_dssp             TCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTSTHHHHH---------HHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCcHHHHHH---------HHHHHHHHH
Confidence            6899999999999999999999 9999999886 5899999999999999999999988743         357889999


Q ss_pred             HHHHHHhCCCCH
Q 024536          213 FDRAVHSAPDDC  224 (266)
Q Consensus       213 ~ekAL~l~P~da  224 (266)
                      |++++..+|++.
T Consensus        84 ~~~~~~~~p~~~   95 (99)
T 2kc7_A           84 YNKDMYNQLEHH   95 (99)
T ss_dssp             HCCTTHHHHCCS
T ss_pred             HHHHhccCcccc
Confidence            999999998764

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.06  E-value=2e-09  Score=98.64  Aligned_cols=110  Identities=14%  Similarity=0.092  Sum_probs=98.8

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHHc--CCH
Q 024536          135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRG--DFVKAEEYCGRAILAKPGDGNVLSMYGDLI----WINH--KDA  206 (266)
Q Consensus       135 ~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~g--d~e~A~~~~erAL~ldP~da~al~nla~ll----~~~~--gd~  206 (266)
                      ..++|++++.++|+++|++..+|+..+.++. ..+  ++++|+++++++|..+|.+..+|++.+.++    ....  +++
T Consensus        48 ~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~-~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~  126 (306)
T 3dra_A           48 YSERALHITELGINELASHYTIWIYRFNILK-NLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP  126 (306)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred             CCHHHHHHHHHHHHHCcHHHHHHHHHHHHHH-HcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence            3479999999999999999999999999886 456  999999999999999999999999999888    4421  789


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcc--cccc
Q 024536          207 PRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEE--DDDD  245 (266)
Q Consensus       207 deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~--eA~~  245 (266)
                      ++++.+++++++++|.+..+|..-++++...++++  ++++
T Consensus       127 ~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~  167 (306)
T 3dra_A          127 YREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELS  167 (306)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHH
Confidence            99999999999999999999999999999999887  5553

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.06  E-value=1.4e-10  Score=99.41  Aligned_cols=111  Identities=14%  Similarity=0.076  Sum_probs=81.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDA------LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD------GNVLSMYGDLIWI  201 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~------~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d------a~al~nla~ll~~  201 (266)
                      +++++|+.+|++++++.+...      .++.++|.++. ..|++++|+.+|++++.+.+..      +.++.++|.++..
T Consensus       197 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  275 (338)
T 3ro2_A          197 GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI-FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL  275 (338)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Confidence            577888888888887765432      27777777665 4688888888888888876655      6677778877765


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCccccccc
Q 024536          202 NHKDAPRAKSYFDRAVHSAPDD------CHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       202 ~~gd~deAi~~~ekAL~l~P~d------a~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                       .|++++|+.+|++|+.+.+..      ..++..+|.++...|++++|.+.
T Consensus       276 -~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  325 (338)
T 3ro2_A          276 -LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF  325 (338)
T ss_dssp             -TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             -hcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence             788888888888888776532      44677788888888888887753

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.05  E-value=5.6e-10  Score=109.87  Aligned_cols=107  Identities=7%  Similarity=-0.080  Sum_probs=95.1

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-----------
Q 024536          135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRG-DFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN-----------  202 (266)
Q Consensus       135 ~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~g-d~e~A~~~~erAL~ldP~da~al~nla~ll~~~-----------  202 (266)
                      ++++|+++|.++++++|.|..+|++.+.++. ..+ .+++|.++++++|+.+|.|..+|++.+.++...           
T Consensus       124 ~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~-~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~  202 (567)
T 1dce_A          124 NWARELELCARFLEADERNFHCWDYRRFVAA-QAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR  202 (567)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred             cHHHHHHHHHHHHhhccccccHHHHHHHHHH-HcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence            6899999999999999999999999998876 466 899999999999999999999999999888663           


Q ss_pred             --cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccc
Q 024536          203 --HKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEED  242 (266)
Q Consensus       203 --~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~e  242 (266)
                        .+.+++|++++++||.++|++..+|+++++++...+++++
T Consensus       203 ~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          203 LPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             SCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred             ccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence              1457999999999999999999999999999998888555

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.05  E-value=2.2e-10  Score=106.49  Aligned_cols=92  Identities=13%  Similarity=-0.024  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024536          154 ALVLANYAKFLKEIRGDFVKAEEYCGRAIL----------------AKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAV  217 (266)
Q Consensus       154 ~~al~nlA~~L~~~~gd~e~A~~~~erAL~----------------ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL  217 (266)
                      +..|.++|..++ ..+++++|+.+|++||+                ++|.++.+|.++|.+++. .+++++|+.+|++|+
T Consensus       223 a~~~~~~g~~~~-~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~g~~~~A~~~~~~al  300 (370)
T 1ihg_A          223 SEDLKNIGNTFF-KSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK-MSDWQGAVDSCLEAL  300 (370)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHH
Confidence            456888998876 58999999999999999                889999999999999876 899999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCcccccccc
Q 024536          218 HSAPDDCHVLASYARFLWDAGEEEDDDDGD  247 (266)
Q Consensus       218 ~l~P~da~a~~~lA~ll~~~G~~~eA~~~~  247 (266)
                      +++|+++.+++.+|.++..++++++|++.-
T Consensus       301 ~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l  330 (370)
T 1ihg_A          301 EIDPSNTKALYRRAQGWQGLKEYDQALADL  330 (370)
T ss_dssp             TTCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HhCchhHHHHHHHHHHHHHccCHHHHHHHH
Confidence            999999999999999999999999999643

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.05  E-value=2e-09  Score=76.78  Aligned_cols=67  Identities=21%  Similarity=0.298  Sum_probs=63.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI  201 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~  201 (266)
                      +++++|+.+|+++++++|+++.+++++|.++. ..+++++|+.+|+++++++|+++.++.++|.++..
T Consensus        23 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~   89 (91)
T 1na3_A           23 GDYDEAIEYYQKALELDPNNAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK   89 (91)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence            68999999999999999999999999999886 58999999999999999999999999999988754

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.04  E-value=1.5e-10  Score=104.42  Aligned_cols=110  Identities=15%  Similarity=0.039  Sum_probs=91.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDAL------VLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD------GNVLSMYGDLIWI  201 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~------al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d------a~al~nla~ll~~  201 (266)
                      +++++|+.+|++++++.|....      ++.++|.++. ..|++++|+.+|++|+.+.|..      +.++.++|.++..
T Consensus       237 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  315 (411)
T 4a1s_A          237 GDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHI-FLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTL  315 (411)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH-HCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            6889999999999998876543      7888888775 5799999999999999988754      6788888988866


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCcccccc
Q 024536          202 NHKDAPRAKSYFDRAVHSAPDD------CHVLASYARFLWDAGEEEDDDD  245 (266)
Q Consensus       202 ~~gd~deAi~~~ekAL~l~P~d------a~a~~~lA~ll~~~G~~~eA~~  245 (266)
                       .|++++|+.+|++++.+.+..      +.++..+|.++...|++++|.+
T Consensus       316 -~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  364 (411)
T 4a1s_A          316 -LHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALK  364 (411)
T ss_dssp             -TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             -cCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence             789999999999999886542      4578889999999999998884

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.04  E-value=3.2e-10  Score=103.08  Aligned_cols=111  Identities=15%  Similarity=-0.049  Sum_probs=96.7

Q ss_pred             CCHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPE-------DALVLANYAKFLKEIRGDFVKAEEYCGRAILAKP------GDGNVLSMYGDLIW  200 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~-------~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP------~da~al~nla~ll~  200 (266)
                      +++++|+.+|++|+++.+.       .+.+++++|.++. ..|++++|+.+|++|+.+.+      ..+.++.++|.++.
T Consensus       155 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~  233 (378)
T 3q15_A          155 KQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYD-DFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYD  233 (378)
T ss_dssp             TCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            6899999999999998654       2457889998876 68999999999999999743      23468899999887


Q ss_pred             HHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536          201 INHKDAPRAKSYFDRAVH-----SAPDDCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       201 ~~~gd~deAi~~~ekAL~-----l~P~da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      . .|++++|+.+|++|+.     .+|..+.++..+|.++...|++++|++.
T Consensus       234 ~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  283 (378)
T 3q15_A          234 R-SGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQF  283 (378)
T ss_dssp             H-HTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             H-CCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            7 7999999999999999     8898899999999999999999999853

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.03  E-value=1.4e-10  Score=97.46  Aligned_cols=77  Identities=12%  Similarity=0.090  Sum_probs=69.4

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 024536          168 RGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKD----------APRAKSYFDRAVHSAPDDCHVLASYARFLWDA  237 (266)
Q Consensus       168 ~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd----------~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~  237 (266)
                      .+.+++|.+.|++|++++|+++++|.++|.++.. .++          +++|+..|++||+++|+++.+++++|.+|..+
T Consensus        15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~-l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l   93 (158)
T 1zu2_A           15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLE-LSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF   93 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-hcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence            4568999999999999999999999999998876 444          56999999999999999999999999999988


Q ss_pred             C-----------Ccccccc
Q 024536          238 G-----------EEEDDDD  245 (266)
Q Consensus       238 G-----------~~~eA~~  245 (266)
                      |           ++++|++
T Consensus        94 g~l~P~~~~a~g~~~eA~~  112 (158)
T 1zu2_A           94 AFLTPDETEAKHNFDLATQ  112 (158)
T ss_dssp             HHHCCCHHHHHHHHHHHHH
T ss_pred             cccCcchhhhhccHHHHHH
Confidence            5           7888885

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.03  E-value=9.5e-10  Score=83.61  Aligned_cols=74  Identities=16%  Similarity=0.024  Sum_probs=67.1

Q ss_pred             CCCCHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 024536          150 YPEDALVLANYAKFLKEIRGD---FVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCH  225 (266)
Q Consensus       150 ~P~~~~al~nlA~~L~~~~gd---~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~  225 (266)
                      +|+++.++..+|.+++. .++   .++|..++++||++||+++.+++.+|.++++ .|+|++|+.+|+++++.+|.++.
T Consensus         2 ~p~~~~~~~~~a~al~~-~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~-~g~y~~Ai~~w~~~l~~~p~~~~   78 (93)
T 3bee_A            2 NAVTATQLAAKATTLYY-LHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFI-SFRFQEAIDTWVLLLDSNDPNLD   78 (93)
T ss_dssp             CCCCHHHHHHHHHHHHH-TTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTCCCTTCC
T ss_pred             CCCCHHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCcc
Confidence            79999999999999863 343   6999999999999999999999999999887 89999999999999999998543

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.03  E-value=3.8e-11  Score=115.11  Aligned_cols=92  Identities=14%  Similarity=-0.067  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 024536          154 ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARF  233 (266)
Q Consensus       154 ~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~l  233 (266)
                      +.++.++|..+. ..|++++|+++|++|++++|+++.++.++|.++.. .+++++|+.+|++|++++|+++.++.++|.+
T Consensus         6 a~~~~~lg~~~~-~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~   83 (477)
T 1wao_1            6 AEELKTQANDYF-KAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR-TECYGYALGDATRAIELDKKYIKGYYRRAAS   83 (477)
T ss_dssp             HTTSSSSSSSTT-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            445566666655 57999999999999999999999999999999877 8999999999999999999999999999999


Q ss_pred             HHHcCCcccccccc
Q 024536          234 LWDAGEEEDDDDGD  247 (266)
Q Consensus       234 l~~~G~~~eA~~~~  247 (266)
                      +..+|++++|++.-
T Consensus        84 ~~~~g~~~eA~~~~   97 (477)
T 1wao_1           84 NMALGKFRAALRDY   97 (477)
T ss_dssp             HHHHTCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHH
Confidence            99999999999643

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.01  E-value=6.6e-10  Score=97.85  Aligned_cols=111  Identities=9%  Similarity=-0.033  Sum_probs=89.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALV------LANYAKFLKEIRGDFVKAEEYCGRAILAKPGD------GNVLSMYGDLIWI  201 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~a------l~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d------a~al~nla~ll~~  201 (266)
                      +++++|+.+|+++++..+.++..      +..+|.++. ..+++++|+.+|++|+.+.+..      ..++.++|.++..
T Consensus        89 ~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~  167 (293)
T 3u3w_A           89 KRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVL-KKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAE  167 (293)
T ss_dssp             TCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHT-TSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHH-cccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence            68999999999999999888762      223565543 4679999999999999975443      3478999998876


Q ss_pred             HcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCccccccc
Q 024536          202 NHKDAPRAKSYFDRAVHS-------APDDCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       202 ~~gd~deAi~~~ekAL~l-------~P~da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                       .|++++|+.+|++|++.       .+..+.++.++|.++...|++++|++.
T Consensus       168 -~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~  218 (293)
T 3u3w_A          168 -NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQ  218 (293)
T ss_dssp             -TTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             -cCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence             89999999999999953       223345789999999999999999953

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.01  E-value=4.3e-09  Score=96.43  Aligned_cols=109  Identities=9%  Similarity=0.006  Sum_probs=99.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC------
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFV--KAEEYCGRAILAKPGDGNVLSMYGDLIWINHKD------  205 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e--~A~~~~erAL~ldP~da~al~nla~ll~~~~gd------  205 (266)
                      .+++++++++.++++.+|.|..+|++.+.++. ..+.++  +++++++++|+.+|.|..+|.+.+.++.. .++      
T Consensus       124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~-~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~-l~~~~~~~~  201 (306)
T 3dra_A          124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVD-TFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFS-KKHLATDNT  201 (306)
T ss_dssp             CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHS-SGGGCCHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-ccccchhhh
Confidence            35799999999999999999999999998885 578888  99999999999999999999999988865 455      


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536          206 APRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDD  244 (266)
Q Consensus       206 ~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~  244 (266)
                      +++++.+++++|.++|+|..+|+.++.++...|+..++.
T Consensus       202 ~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~  240 (306)
T 3dra_A          202 IDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQL  240 (306)
T ss_dssp             HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGG
T ss_pred             HHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHH
Confidence            999999999999999999999999999999999976655

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.98  E-value=2.3e-09  Score=85.65  Aligned_cols=105  Identities=16%  Similarity=0.107  Sum_probs=87.2

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HcCCHHH
Q 024536          132 SGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI---NHKDAPR  208 (266)
Q Consensus       132 ~~~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~---~~gd~de  208 (266)
                      ..+++++|+.+|++|.+.....+.    +|.++. ....+++|..+|++|.+.  +++.+++++|.++..   ..+|+++
T Consensus         7 ~~~d~~~A~~~~~~aa~~g~~~a~----lg~~y~-~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~   79 (138)
T 1klx_A            7 VKKDLKKAIQYYVKACELNEMFGC----LSLVSN-SQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRK   79 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTTHH----HHHHTC-TTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred             CccCHHHHHHHHHHHHcCCCHhhh----HHHHHH-cCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHH
Confidence            347899999999999998755544    887664 456788899999999987  789999999988764   1579999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCcccccc
Q 024536          209 AKSYFDRAVHSAPDDCHVLASYARFLWD----AGEEEDDDD  245 (266)
Q Consensus       209 Ai~~~ekAL~l~P~da~a~~~lA~ll~~----~G~~~eA~~  245 (266)
                      |+.+|++|.+.  .++.++.++|.+|..    ..+.++|++
T Consensus        80 A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~  118 (138)
T 1klx_A           80 AAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVK  118 (138)
T ss_dssp             HHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred             HHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHH
Confidence            99999999987  788999999999998    778877774

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.96  E-value=6e-09  Score=86.95  Aligned_cols=97  Identities=11%  Similarity=0.024  Sum_probs=86.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHcCCHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRG---DFVKAEEYCGRAILAK-P-GDGNVLSMYGDLIWINHKDAPR  208 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~g---d~e~A~~~~erAL~ld-P-~da~al~nla~ll~~~~gd~de  208 (266)
                      .....+++.|.++++.+|.+..+.++||+.|.. ..   ++++++.+++..++.+ | ++.++++++|..+++ .++|++
T Consensus        12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~-S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~k-l~~Y~~   89 (152)
T 1pc2_A           12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR-SKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR-LKEYEK   89 (152)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH-TSCHHH
T ss_pred             HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHH-ccCHHH
Confidence            567889999999999999999999999998853 34   6789999999999999 8 678999999999987 799999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHH
Q 024536          209 AKSYFDRAVHSAPDDCHVLASYAR  232 (266)
Q Consensus       209 Ai~~~ekAL~l~P~da~a~~~lA~  232 (266)
                      |+.|++++|+++|++.++..-.-.
T Consensus        90 A~~y~~~lL~ieP~n~QA~~Lk~~  113 (152)
T 1pc2_A           90 ALKYVRGLLQTEPQNNQAKELERL  113 (152)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHH
Confidence            999999999999999988755433

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.95  E-value=1.7e-09  Score=97.00  Aligned_cols=111  Identities=9%  Similarity=0.148  Sum_probs=93.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDAL-----VLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG------NVLSMYGDLIWIN  202 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~-----al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da------~al~nla~ll~~~  202 (266)
                      +++++|+.+++++++..|.+..     ++.++|.++. ..|++++|+.++++|+.+.|...      .++.++|.++.. 
T Consensus        28 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-  105 (373)
T 1hz4_A           28 GNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH-CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA-  105 (373)
T ss_dssp             TCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-
T ss_pred             CCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH-
Confidence            6899999999999999886632     6778887765 57999999999999999876543      346788988866 


Q ss_pred             cCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCccccccc
Q 024536          203 HKDAPRAKSYFDRAVHSA--------PDDCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       203 ~gd~deAi~~~ekAL~l~--------P~da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      .|++++|+.+|++++++.        |..+.++.++|.+++..|++++|++.
T Consensus       106 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  157 (373)
T 1hz4_A          106 QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEAS  157 (373)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            899999999999999986        34456788899999999999999854

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.94  E-value=2.4e-09  Score=96.12  Aligned_cols=111  Identities=14%  Similarity=0.119  Sum_probs=94.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDA------LVLANYAKFLKEIRGDFVKAEEYCGRAILAK--------PGDGNVLSMYGDLI  199 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~------~al~nlA~~L~~~~gd~e~A~~~~erAL~ld--------P~da~al~nla~ll  199 (266)
                      +++++|+.+|++++++.|...      .++.++|.++. ..|++++|+.+|++++++.        |....++.++|.++
T Consensus        67 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  145 (373)
T 1hz4_A           67 GELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF-AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLL  145 (373)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHH
Confidence            689999999999999877543      34678888775 5899999999999999976        44567788899988


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCccccccc
Q 024536          200 WINHKDAPRAKSYFDRAVHSAPD-----DCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       200 ~~~~gd~deAi~~~ekAL~l~P~-----da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      +. .|++++|+.++++++.+.|.     ...++..+|.++...|++++|.+.
T Consensus       146 ~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  196 (373)
T 1hz4_A          146 WA-WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQ  196 (373)
T ss_dssp             HH-TTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HH-hcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            77 89999999999999999885     246788999999999999999854

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.94  E-value=6.6e-10  Score=100.95  Aligned_cols=111  Identities=18%  Similarity=0.002  Sum_probs=94.1

Q ss_pred             CCHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYP------EDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG-------DGNVLSMYGDLIW  200 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P------~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~-------da~al~nla~ll~  200 (266)
                      +++++|+.+|++|+++.+      ..+.+++++|.++. ..|++++|..++++|+.+.+.       .+.++.++|.++.
T Consensus       115 g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~  193 (378)
T 3q15_A          115 KEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYY-HMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYD  193 (378)
T ss_dssp             TCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Confidence            689999999999998843      34678999999886 589999999999999997543       2567889999887


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCccccccc
Q 024536          201 INHKDAPRAKSYFDRAVHSAPD------DCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       201 ~~~gd~deAi~~~ekAL~l~P~------da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      . .|++++|+.+|++|+++.+.      .+.++.++|.++...|++++|++.
T Consensus       194 ~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~  244 (378)
T 3q15_A          194 D-FKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEH  244 (378)
T ss_dssp             H-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             H-hCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            6 89999999999999998541      245788999999999999999954

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.94  E-value=5.1e-09  Score=98.01  Aligned_cols=106  Identities=11%  Similarity=0.012  Sum_probs=98.1

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-CHHHHHHH
Q 024536          135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRG-DFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHK-DAPRAKSY  212 (266)
Q Consensus       135 ~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~g-d~e~A~~~~erAL~ldP~da~al~nla~ll~~~~g-d~deAi~~  212 (266)
                      ..++|++++.++|.++|++..+|+..+.++. ..+ ++++++++++++|..+|.+..+|++.++++....+ ++++++.+
T Consensus        69 ~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~-~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~  147 (349)
T 3q7a_A           69 KSERALELTEIIVRMNPAHYTVWQYRFSLLT-SLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEY  147 (349)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHhCchhHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence            4478999999999999999999999999886 456 69999999999999999999999999999977536 89999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCcc
Q 024536          213 FDRAVHSAPDDCHVLASYARFLWDAGEEE  241 (266)
Q Consensus       213 ~ekAL~l~P~da~a~~~lA~ll~~~G~~~  241 (266)
                      ++++++++|.|..+|...++++...++++
T Consensus       148 ~~k~L~~dpkNy~AW~~R~wvl~~l~~~~  176 (349)
T 3q7a_A          148 IHGSLLPDPKNYHTWAYLHWLYSHFSTLG  176 (349)
T ss_dssp             HHHHTSSCTTCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHhcccc
Confidence            99999999999999999999999988877

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.89  E-value=7.8e-10  Score=100.75  Aligned_cols=110  Identities=12%  Similarity=-0.160  Sum_probs=95.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC-HHHHHHHHHHHHHHcCCHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAK-PGD-GNVLSMYGDLIWINHKDAPRAKS  211 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ld-P~d-a~al~nla~ll~~~~gd~deAi~  211 (266)
                      +++++|.+.|+.++..+|++. +++.+|.+++ ..+++++|+.+|++++... |.. ..+++++|.++.. .|++++|+.
T Consensus       116 g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~-~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~-LG~~~eAl~  192 (282)
T 4f3v_A          116 GNYADAMEALEAAPVAGSEHL-VAWMKAVVYG-AAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAAN-LALFTEAER  192 (282)
T ss_dssp             TCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHH-HTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCchH-HHHHHHHHHH-HcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHH-CCCHHHHHH
Confidence            799999999999999999999 9999998776 5899999999999887763 221 3589999998866 899999999


Q ss_pred             HHHHHHHhC--CC-CHHHHHHHHHHHHHcCCccccccc
Q 024536          212 YFDRAVHSA--PD-DCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       212 ~~ekAL~l~--P~-da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      +|++++...  |. .+.+++++|.++.++|+.++|.++
T Consensus       193 ~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~  230 (282)
T 4f3v_A          193 RLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVAL  230 (282)
T ss_dssp             HHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHH
Confidence            999999654  55 667999999999999999999954

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.88  E-value=3.8e-08  Score=78.53  Aligned_cols=93  Identities=14%  Similarity=0.165  Sum_probs=77.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---cCCHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKE---IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN---HKDAP  207 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~---~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~---~gd~d  207 (266)
                      ...++|+.+|++|.+.  +++.+++++|.++..   ..+|+++|..+|++|.+.  .++.+++++|.++..-   .+|++
T Consensus        39 ~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~  114 (138)
T 1klx_A           39 INKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEK  114 (138)
T ss_dssp             SCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred             CCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHH
Confidence            4567899999999997  899999999998763   168999999999999987  7899999999888651   57999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHH
Q 024536          208 RAKSYFDRAVHSAPDDCHVLASYAR  232 (266)
Q Consensus       208 eAi~~~ekAL~l~P~da~a~~~lA~  232 (266)
                      +|+.+|++|.+.  .++.+..+++.
T Consensus       115 ~A~~~~~~Aa~~--g~~~A~~~l~~  137 (138)
T 1klx_A          115 QAVKTFEKACRL--GSEDACGILNN  137 (138)
T ss_dssp             HHHHHHHHHHHT--TCHHHHHHC--
T ss_pred             HHHHHHHHHHHC--CCHHHHHHHhh
Confidence            999999999998  45666665553

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.88  E-value=4.8e-09  Score=96.23  Aligned_cols=90  Identities=16%  Similarity=0.190  Sum_probs=80.6

Q ss_pred             CCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCC
Q 024536          133 GKESESMDVYYQEMIKAYPE--DALVLANYAKFLKEI----RGDFVKAEEYCGRAILAKPGD-GNVLSMYGDLIWINHKD  205 (266)
Q Consensus       133 ~~~~eeA~~~y~rALel~P~--~~~al~nlA~~L~~~----~gd~e~A~~~~erAL~ldP~d-a~al~nla~ll~~~~gd  205 (266)
                      .....+|...+++||+++|+  +..+|..+|.++..+    -|+.++|+++|+|||+++|+. ..+++.||.++...++|
T Consensus       176 l~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd  255 (301)
T 3u64_A          176 PDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN  255 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred             HHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence            36788999999999999999  677999999877531    389999999999999999975 99999999988765699


Q ss_pred             HHHHHHHHHHHHHhCCC
Q 024536          206 APRAKSYFDRAVHSAPD  222 (266)
Q Consensus       206 ~deAi~~~ekAL~l~P~  222 (266)
                      +++|.+++++|+..+|.
T Consensus       256 ~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          256 RAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHHHHcCCCC
Confidence            99999999999999887

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.87  E-value=2.1e-08  Score=93.08  Aligned_cols=102  Identities=8%  Similarity=0.019  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-HHHHHHH
Q 024536          136 SESMDVYYQEMIKAYPEDALVLANYAKFLKEIRG--DFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKD-APRAKSY  212 (266)
Q Consensus       136 ~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~g--d~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd-~deAi~~  212 (266)
                      +++++.++.++|..+|.+..+|++.+.++. ..+  ++++++.++.++++++|.|..+|.+.+.++.. .+. +++++.+
T Consensus        90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~-~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~-l~~~~~eel~~  167 (331)
T 3dss_A           90 VKAELGFLESCLRVNPKSYGTWHHRCWLLS-RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQ-AAVAPAEELAF  167 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHh-ccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hCcCHHHHHHH
Confidence            789999999999999999999999999886 456  58999999999999999999999999988866 577 6999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 024536          213 FDRAVHSAPDDCHVLASYARFLWDAGE  239 (266)
Q Consensus       213 ~ekAL~l~P~da~a~~~lA~ll~~~G~  239 (266)
                      ++++|+.+|.|..+|++.+.++.....
T Consensus       168 ~~~~I~~~p~N~SAW~~R~~ll~~l~~  194 (331)
T 3dss_A          168 TDSLITRNFSNYSSWHYRSCLLPQLHP  194 (331)
T ss_dssp             HHHHHHHCSCCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHhhh
Confidence            999999999999999999999988743

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.86  E-value=8.3e-09  Score=97.59  Aligned_cols=93  Identities=16%  Similarity=0.211  Sum_probs=67.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-----CH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLK--EIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHK-----DA  206 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~--~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~g-----d~  206 (266)
                      +++++|+.+|++++   |+++.+++++|.+++  ...+++++|..+|++|++.  +++.+++++|.++..  |     |+
T Consensus       231 ~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~--G~g~~~d~  303 (452)
T 3e4b_A          231 PDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYYE--GKWVPADA  303 (452)
T ss_dssp             CCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH--CSSSCCCH
T ss_pred             CCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHc--CCCCCCCH
Confidence            57777777777776   777777777777643  2357777788888777754  477777777776643  4     77


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024536          207 PRAKSYFDRAVHSAPDDCHVLASYARFLWD  236 (266)
Q Consensus       207 deAi~~~ekAL~l~P~da~a~~~lA~ll~~  236 (266)
                      ++|+.+|++|+   |+++.+++++|.+|..
T Consensus       304 ~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~  330 (452)
T 3e4b_A          304 KAAEAHFEKAV---GREVAADYYLGQIYRR  330 (452)
T ss_dssp             HHHHHHHHTTT---TTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHh---CCCHHHHHHHHHHHHC
Confidence            88888888777   7777777777766665

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.85  E-value=2.1e-08  Score=93.10  Aligned_cols=108  Identities=11%  Similarity=0.024  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-
Q 024536          136 SESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGD----------FVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHK-  204 (266)
Q Consensus       136 ~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd----------~e~A~~~~erAL~ldP~da~al~nla~ll~~~~g-  204 (266)
                      .++|++++.++|.++|++..+|+..+.++.. .+.          +++++.+++++|..+|.+..+|++.++++.. .+ 
T Consensus        46 s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~-l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~-l~~  123 (331)
T 3dss_A           46 DESVLELTSQILGANPDFATLWNCRREVLQH-LETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR-LPE  123 (331)
T ss_dssp             SHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-HHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-CSS
T ss_pred             CHHHHHHHHHHHHHCchhHHHHHHHHHHHHH-hcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc-cCc
Confidence            3689999999999999999999999988753 332          7899999999999999999999999999876 55 


Q ss_pred             -CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc-ccccc
Q 024536          205 -DAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEE-EDDDD  245 (266)
Q Consensus       205 -d~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~-~eA~~  245 (266)
                       ++++++.+++++++++|.|..+|..-++++...++. +++++
T Consensus       124 ~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~  166 (331)
T 3dss_A          124 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELA  166 (331)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence             589999999999999999999999999999999984 56653

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.82  E-value=9e-09  Score=99.97  Aligned_cols=109  Identities=10%  Similarity=0.058  Sum_probs=92.1

Q ss_pred             CCHHHHHHHHHHHHHH-----CCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHH
Q 024536          134 KESESMDVYYQEMIKA-----YPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRAILA-----KPGDG---NVLSMYGD  197 (266)
Q Consensus       134 ~~~eeA~~~y~rALel-----~P~~~---~al~nlA~~L~~~~gd~e~A~~~~erAL~l-----dP~da---~al~nla~  197 (266)
                      +++++|+.+|+++|++     .|+|+   .+++|+|.++. .+|+|++|+.+|++||++     -|++|   ..++|+|.
T Consensus       323 g~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~-~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  401 (490)
T 3n71_A          323 GLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLS-YLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGL  401 (490)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            7899999999999987     45665   57788998876 689999999999999985     46666   46889999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHcCCccccc
Q 024536          198 LIWINHKDAPRAKSYFDRAVHS-----APDDCH---VLASYARFLWDAGEEEDDD  244 (266)
Q Consensus       198 ll~~~~gd~deAi~~~ekAL~l-----~P~da~---a~~~lA~ll~~~G~~~eA~  244 (266)
                      +++. +|++++|+.+|++|+++     -|+++.   ....++.++.+++.+++|+
T Consensus       402 ~~~~-~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae  455 (490)
T 3n71_A          402 TNWH-AGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNE  455 (490)
T ss_dssp             HHHH-TTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHH-CCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8877 89999999999999975     577765   4568888888888888888

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.82  E-value=1.2e-08  Score=96.54  Aligned_cols=107  Identities=12%  Similarity=0.163  Sum_probs=92.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HHcCCHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEI---RGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIW--INHKDAPR  208 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~---~gd~e~A~~~~erAL~ldP~da~al~nla~ll~--~~~gd~de  208 (266)
                      .++++|+.+|+++++.+|.++.+++++|.++...   .+++++|..+|++|+   |+++.+++++|.+++  ...+|+++
T Consensus       193 ~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~  269 (452)
T 3e4b_A          193 EQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQ  269 (452)
T ss_dssp             HHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHH
T ss_pred             ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHH
Confidence            4899999999999999999999999999887421   269999999999998   999999999999855  44799999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----Cccccccc
Q 024536          209 AKSYFDRAVHSAPDDCHVLASYARFLWDAG-----EEEDDDDG  246 (266)
Q Consensus       209 Ai~~~ekAL~l~P~da~a~~~lA~ll~~~G-----~~~eA~~~  246 (266)
                      |+.+|++|++.  +++.+++++|.+|. .|     ++++|++.
T Consensus       270 A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~  309 (452)
T 3e4b_A          270 MMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAH  309 (452)
T ss_dssp             HHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred             HHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence            99999999965  58999999999888 55     66666643

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.81  E-value=4.9e-08  Score=91.88  Aligned_cols=103  Identities=13%  Similarity=0.151  Sum_probs=51.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC---C
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIR-----GDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHK---D  205 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~-----gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~g---d  205 (266)
                      +++++|+.+|++|++.  +++.+++++|.++. ..     +++++|+.+|++|++.  +++.+++++|.++.. .+   +
T Consensus       273 ~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~-~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~-~g~~~~  346 (490)
T 2xm6_A          273 KEPLKALEWYRKSAEQ--GNSDGQYYLAHLYD-KGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFR-LGSEEE  346 (490)
T ss_dssp             CCHHHHHHHHHHHHTT--TCHHHHHHHHHHHH-HCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH-SCCHHH
T ss_pred             CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHH-cCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHh-CCCccc
Confidence            4555555555555443  44555555555443 22     4555555555555543  334455555554433 22   4


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCccccc
Q 024536          206 APRAKSYFDRAVHSAPDDCHVLASYARFLWD----AGEEEDDD  244 (266)
Q Consensus       206 ~deAi~~~ekAL~l~P~da~a~~~lA~ll~~----~G~~~eA~  244 (266)
                      +++|+.+|++|++.  +++.++.++|.++..    .+++++|+
T Consensus       347 ~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~  387 (490)
T 2xm6_A          347 HKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAA  387 (490)
T ss_dssp             HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred             HHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence            55555555555554  345555555555555    44444444

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.81  E-value=7.4e-09  Score=77.57  Aligned_cols=62  Identities=19%  Similarity=0.217  Sum_probs=56.3

Q ss_pred             hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536          184 AKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       184 ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      .+|+++.+++++|.+++. .|++++|+.+|++|++++|+++.++..+|.++...|++++|++.
T Consensus         2 ~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~   63 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLK-HDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDT   63 (100)
T ss_dssp             ---CCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence            479999999999999877 89999999999999999999999999999999999999999853

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.81  E-value=6.8e-08  Score=90.95  Aligned_cols=107  Identities=10%  Similarity=0.112  Sum_probs=72.2

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HcCCH
Q 024536          133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEI---RGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI---NHKDA  206 (266)
Q Consensus       133 ~~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~---~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~---~~gd~  206 (266)
                      .+++++|+.+|++|++.  +++.+++++|.++...   .+++++|+.+|++|+..  +++.+++++|.++..   ..+++
T Consensus        92 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~  167 (490)
T 2xm6_A           92 PQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDY  167 (490)
T ss_dssp             CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred             CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCH
Confidence            45677777777777664  4677777777765421   45777777777777664  467777777766643   14577


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCcccccc
Q 024536          207 PRAKSYFDRAVHSAPDDCHVLASYARFLWD----AGEEEDDDD  245 (266)
Q Consensus       207 deAi~~~ekAL~l~P~da~a~~~lA~ll~~----~G~~~eA~~  245 (266)
                      ++|+.+|++|++.  +++.++..+|.++..    .+++++|++
T Consensus       168 ~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~  208 (490)
T 2xm6_A          168 VMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQ  208 (490)
T ss_dssp             HHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred             HHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHH
Confidence            7777777777765  467777777777776    566666653

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.78  E-value=1.8e-08  Score=95.03  Aligned_cols=120  Identities=8%  Similarity=-0.026  Sum_probs=90.9

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--HcC--C---HHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHH
Q 024536          132 SGKESESMDVYYQEMIKAYPEDALVLANYAKFLKE--IRG--D---FVKAEEYCG--RAILAKPGDGNVLSMYGDLIWIN  202 (266)
Q Consensus       132 ~~~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~--~~g--d---~e~A~~~~e--rAL~ldP~da~al~nla~ll~~~  202 (266)
                      +..++.+|+.+|++|++++|+++.+|..++.++..  ..+  .   .+.....++  .++..+|.++.++..++.+++. 
T Consensus       211 ~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~-  289 (372)
T 3ly7_A          211 DDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALV-  289 (372)
T ss_dssp             SHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHH-
T ss_pred             CHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHh-
Confidence            45778999999999999999999999877665421  112  1   111112222  2335679999999999987765 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccccccccccC
Q 024536          203 HKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDDQETCA  253 (266)
Q Consensus       203 ~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~~~~~~  253 (266)
                      +|++++|+.++++|+.++|+ ..++..+|.++...|+.++|+++-+..-.+
T Consensus       290 ~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL  339 (372)
T 3ly7_A          290 KGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNL  339 (372)
T ss_dssp             HTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            79999999999999999974 778889999999999999999765443333

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.77  E-value=1.2e-08  Score=78.17  Aligned_cols=91  Identities=15%  Similarity=0.075  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----
Q 024536          154 ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG------NVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD----  223 (266)
Q Consensus       154 ~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da------~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~d----  223 (266)
                      +.++.++|.++. ..+++++|+.+|++|+.+.+...      .++.++|.++.. .|++++|+.+|++++.+.+..    
T Consensus         9 ~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~   86 (164)
T 3ro3_A            9 GRAFGNLGNTHY-LLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIF-LGEFETASEYYKKTLLLARQLKDRA   86 (164)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhCCcH
Confidence            457788888776 58999999999999999876432      478889998876 899999999999999987653    


Q ss_pred             --HHHHHHHHHHHHHcCCccccccc
Q 024536          224 --CHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       224 --a~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                        +.++.++|.++...|++++|++.
T Consensus        87 ~~~~~~~~l~~~~~~~~~~~~A~~~  111 (164)
T 3ro3_A           87 VEAQSCYSLGNTYTLLQDYEKAIDY  111 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHH
Confidence              56889999999999999999853

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.76  E-value=2.4e-08  Score=93.47  Aligned_cols=104  Identities=12%  Similarity=-0.003  Sum_probs=95.5

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH------
Q 024536          135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRG-DFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAP------  207 (266)
Q Consensus       135 ~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~g-d~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~d------  207 (266)
                      .++++++++.++|..+|++..+|++.+.++....+ ++++++++++++|.++|.|..+|.+.+.++.. .+.++      
T Consensus       104 ~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~-l~~~~~~~~~~  182 (349)
T 3q7a_A          104 SLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSH-FSTLGRISEAQ  182 (349)
T ss_dssp             CHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHH-HHHTTCCCHHH
T ss_pred             hHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hccccccchhh
Confidence            68999999999999999999999999998865436 89999999999999999999999999988866 45566      


Q ss_pred             --HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 024536          208 --RAKSYFDRAVHSAPDDCHVLASYARFLWDAGE  239 (266)
Q Consensus       208 --eAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~  239 (266)
                        +++++++++|+.+|.|..+|.+.+.++...++
T Consensus       183 ~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~  216 (349)
T 3q7a_A          183 WGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPG  216 (349)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTT
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence              99999999999999999999999999998887

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.75  E-value=1.3e-07  Score=72.04  Aligned_cols=80  Identities=14%  Similarity=0.135  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 024536          154 ALVLANYAKFLKEIRGDFVKAEEYCGRAILAK-------PGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHV  226 (266)
Q Consensus       154 ~~al~nlA~~L~~~~gd~e~A~~~~erAL~ld-------P~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a  226 (266)
                      +.-.+.+|.+++ ..++|..|...|++|+...       +..+.++.++|.++++ .|++++|+.++++|++++|++..+
T Consensus         5 a~dc~~lG~~~~-~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~-~g~~~~A~~~~~~al~l~P~~~~~   82 (104)
T 2v5f_A            5 AEDCFELGKVAY-TEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ-QGDLDKALLLTKKLLELDPEHQRA   82 (104)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHH-HccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHhcCCCCHHH
Confidence            455678888887 5899999999999999974       3567899999999987 899999999999999999999999


Q ss_pred             HHHHHHHHH
Q 024536          227 LASYARFLW  235 (266)
Q Consensus       227 ~~~lA~ll~  235 (266)
                      +.++..+-.
T Consensus        83 ~~n~~~~~~   91 (104)
T 2v5f_A           83 NGNLKYFEY   91 (104)
T ss_dssp             HHHHHHHHH
T ss_pred             HhhHHHHHH
Confidence            988884433

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.74  E-value=2.3e-08  Score=95.73  Aligned_cols=93  Identities=10%  Similarity=0.009  Sum_probs=78.0

Q ss_pred             CCHHHHHHHHHHHHHH-----CCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHH
Q 024536          134 KESESMDVYYQEMIKA-----YPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRAILA-----KPGDG---NVLSMYGD  197 (266)
Q Consensus       134 ~~~eeA~~~y~rALel-----~P~~~---~al~nlA~~L~~~~gd~e~A~~~~erAL~l-----dP~da---~al~nla~  197 (266)
                      +++++|+.+|+++|++     .|+|+   ..++|+|.++. .+|+|++|+.+|++||++     -|+++   ..++|+|.
T Consensus       312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~-~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  390 (433)
T 3qww_A          312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCL-YMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR  390 (433)
T ss_dssp             SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            5789999999999996     57776   56788998876 689999999999999985     46665   46889999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHH
Q 024536          198 LIWINHKDAPRAKSYFDRAVHS-----APDDCHVLA  228 (266)
Q Consensus       198 ll~~~~gd~deAi~~~ekAL~l-----~P~da~a~~  228 (266)
                      +++. +|++++|+.+|+||+++     -|+++.+..
T Consensus       391 ~~~~-qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~  425 (433)
T 3qww_A          391 LYMG-LENKAAGEKALKKAIAIMEVAHGKDHPYISE  425 (433)
T ss_dssp             HHHH-TTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred             HHHh-ccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence            9877 89999999999999986     478876643

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.64  E-value=8.5e-08  Score=87.28  Aligned_cols=95  Identities=9%  Similarity=-0.099  Sum_probs=80.3

Q ss_pred             CCHHHHHHHHHHHHHHCCC-C-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHHcCCHHH
Q 024536          134 KESESMDVYYQEMIKAYPE-D-ALVLANYAKFLKEIRGDFVKAEEYCGRAILAK--PG-DGNVLSMYGDLIWINHKDAPR  208 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~-~-~~al~nlA~~L~~~~gd~e~A~~~~erAL~ld--P~-da~al~nla~ll~~~~gd~de  208 (266)
                      +++++|+.+|++++...+. . ..+++++|.++. ..|++++|+.+|++|+...  |. .+++++++|.++.. +|+.++
T Consensus       149 ~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~-~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~-lGr~de  226 (282)
T 4f3v_A          149 ERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAA-NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRS-QGNESA  226 (282)
T ss_dssp             TCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHH-HTCHHH
T ss_pred             CCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHH-HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHH-cCCHHH
Confidence            7999999999988775322 1 358999999875 6899999999999999655  66 66799999999877 799999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHH
Q 024536          209 AKSYFDRAVHSAPDDCHVLASYA  231 (266)
Q Consensus       209 Ai~~~ekAL~l~P~da~a~~~lA  231 (266)
                      |+.+|+++++.+|+ +.+...|.
T Consensus       227 A~~~l~~a~a~~P~-~~~~~aL~  248 (282)
T 4f3v_A          227 AVALLEWLQTTHPE-PKVAAALK  248 (282)
T ss_dssp             HHHHHHHHHHHSCC-HHHHHHHH
T ss_pred             HHHHHHHHHhcCCc-HHHHHHHh
Confidence            99999999999999 87776653

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.60  E-value=9.3e-08  Score=87.67  Aligned_cols=97  Identities=14%  Similarity=0.036  Sum_probs=78.3

Q ss_pred             CCCCHHHHHHHHHHHHH---H-cC------CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHH----cCCHHHHHHHH
Q 024536          150 YPEDALVLANYAKFLKE---I-RG------DFVKAEEYCGRAILAKPG--DGNVLSMYGDLIWIN----HKDAPRAKSYF  213 (266)
Q Consensus       150 ~P~~~~al~nlA~~L~~---~-~g------d~e~A~~~~erAL~ldP~--da~al~nla~ll~~~----~gd~deAi~~~  213 (266)
                      +|+++.+++..|..+..   . .+      ...+|...++|||++||+  +..+|..+|.+|...    .|+.++|+++|
T Consensus       148 ~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~f  227 (301)
T 3u64_A          148 TRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAF  227 (301)
T ss_dssp             CGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHH
T ss_pred             CccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHH
Confidence            45567766666654321   1 23      358999999999999999  788999999887652    49999999999


Q ss_pred             HHHHHhCCCC-HHHHHHHHHHHHHc-CCccccccc
Q 024536          214 DRAVHSAPDD-CHVLASYARFLWDA-GEEEDDDDG  246 (266)
Q Consensus       214 ekAL~l~P~d-a~a~~~lA~ll~~~-G~~~eA~~~  246 (266)
                      +|||+++|+. ..++..||.+++.. ++.++|++.
T Consensus       228 erAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~  262 (301)
T 3u64_A          228 EHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEA  262 (301)
T ss_dssp             HHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHH
T ss_pred             HHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHH
Confidence            9999999975 99999999999885 888888854

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.50  E-value=3.9e-07  Score=86.76  Aligned_cols=101  Identities=14%  Similarity=-0.018  Sum_probs=81.5

Q ss_pred             CCHHHHHHHHHHHHHH-----CCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH---HHHHHHH
Q 024536          134 KESESMDVYYQEMIKA-----YPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRAILA-----KPGDGN---VLSMYGD  197 (266)
Q Consensus       134 ~~~eeA~~~y~rALel-----~P~~~---~al~nlA~~L~~~~gd~e~A~~~~erAL~l-----dP~da~---al~nla~  197 (266)
                      +++++|+.+|+++|++     .|+|+   .++.|+|.++. .+|+|++|+.+++++|++     -|++|.   .++++|.
T Consensus       301 g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~-~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~  379 (429)
T 3qwp_A          301 WKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACI-NLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGK  379 (429)
T ss_dssp             TCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHH
Confidence            5889999999999975     56676   56788888776 589999999999999985     466664   5889999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHH---HHHHHHHHH
Q 024536          198 LIWINHKDAPRAKSYFDRAVHS-----APDDCHVL---ASYARFLWD  236 (266)
Q Consensus       198 ll~~~~gd~deAi~~~ekAL~l-----~P~da~a~---~~lA~ll~~  236 (266)
                      +++. +|++++|+.+|++|+++     -|+++.+.   .+++.++.+
T Consensus       380 ~~~~-~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e  425 (429)
T 3qwp_A          380 LQLH-QGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDAN  425 (429)
T ss_dssp             HHHH-TTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHh-cCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence            9877 89999999999999986     57877653   455555543

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.35  E-value=7.5e-07  Score=67.40  Aligned_cols=62  Identities=10%  Similarity=0.029  Sum_probs=56.9

Q ss_pred             CCCCHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccccc
Q 024536          185 KPGDGNVLSMYGDLIWINHKD---APRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGD  247 (266)
Q Consensus       185 dP~da~al~nla~ll~~~~gd---~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~  247 (266)
                      +|++++++..+|.+++. .++   .++|+.++++|++++|+++.++..+|.++++.|++++|++.-
T Consensus         2 ~p~~~~~~~~~a~al~~-~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w   66 (93)
T 3bee_A            2 NAVTATQLAAKATTLYY-LHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTW   66 (93)
T ss_dssp             CCCCHHHHHHHHHHHHH-TTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            79999999999999976 444   799999999999999999999999999999999999999643

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.29  E-value=2.5e-06  Score=86.00  Aligned_cols=112  Identities=9%  Similarity=0.025  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 024536          136 SESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAE-EYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFD  214 (266)
Q Consensus       136 ~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~-~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~e  214 (266)
                      .++....|++||...|.++.+|..||.++. ..++.++|. ..|++|+...|.+...|..++.+... .+++++|..+|+
T Consensus       325 ~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~-~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~-~~~~e~aR~iye  402 (679)
T 4e6h_A          325 KARMTYVYMQAAQHVCFAPEIWFNMANYQG-EKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYEL-NTKIPEIETTIL  402 (679)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hCCHHHHHHHHH
Confidence            345678999999999999999999999875 568888996 99999999999999999999987755 799999999999


Q ss_pred             HHHHh-----------CCC-----------CHHHHHHHHHHHHHcCCcccccccccc
Q 024536          215 RAVHS-----------APD-----------DCHVLASYARFLWDAGEEEDDDDGDDQ  249 (266)
Q Consensus       215 kAL~l-----------~P~-----------da~a~~~lA~ll~~~G~~~eA~~~~~~  249 (266)
                      +++..           .|.           .+.+|..++.+....+..+.|.++.+.
T Consensus       403 k~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~  459 (679)
T 4e6h_A          403 SCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGK  459 (679)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            99985           253           456899999999999988888865443

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.28  E-value=4.7e-06  Score=63.23  Aligned_cols=63  Identities=11%  Similarity=0.114  Sum_probs=56.8

Q ss_pred             CCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAY-------PEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGD  197 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~-------P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~  197 (266)
                      +++..|+.+|++|++..       +..+.++.+||.+++ ..|++++|..++++|++++|+++.++.|+..
T Consensus        19 ~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~-~~g~~~~A~~~~~~al~l~P~~~~~~~n~~~   88 (104)
T 2v5f_A           19 ADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVY-QQGDLDKALLLTKKLLELDPEHQRANGNLKY   88 (104)
T ss_dssp             TCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCCCCHHHHhhHHH
Confidence            68999999999999974       356789999999887 5899999999999999999999999988873

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.25  E-value=5.8e-06  Score=77.96  Aligned_cols=77  Identities=9%  Similarity=-0.014  Sum_probs=66.6

Q ss_pred             HHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 024536          146 MIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCH  225 (266)
Q Consensus       146 ALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~  225 (266)
                      ++..+|.++.++..++..+. ..|++++|..++++|++++|+ ..+|..+|.++. ..|++++|++.|++|+.++|....
T Consensus       269 a~~~~~~~a~~~~alal~~l-~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~-~~G~~~eA~e~~~~AlrL~P~~~t  345 (372)
T 3ly7_A          269 TLPELNNLSIIYQIKAVSAL-VKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYE-MKGMNREAADAYLTAFNLRPGANT  345 (372)
T ss_dssp             TCGGGTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred             hcccCCcCHHHHHHHHHHHH-hCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCcCh
Confidence            34667999999999987664 479999999999999999975 778888888775 589999999999999999998764

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.24  E-value=1e-05  Score=65.41  Aligned_cols=96  Identities=11%  Similarity=0.038  Sum_probs=80.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHcCCHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEI--RGDFVKAEEYCGRAILAK-P-GDGNVLSMYGDLIWINHKDAPRA  209 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~--~gd~e~A~~~~erAL~ld-P-~da~al~nla~ll~~~~gd~deA  209 (266)
                      .....++..|.+++..++....+.++||+.|...  ..+..+++.+++..+..+ | ..-+.++.+|..+++ .|+|++|
T Consensus        15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yk-lg~Y~~A   93 (126)
T 1nzn_A           15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR-LKEYEKA   93 (126)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH-TTCHHHH
T ss_pred             HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH-hhhHHHH
Confidence            3467788999999999999999999999988421  124566999999999987 5 566889999999988 7999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHH
Q 024536          210 KSYFDRAVHSAPDDCHVLASY  230 (266)
Q Consensus       210 i~~~ekAL~l~P~da~a~~~l  230 (266)
                      +.+++.+|+.+|+|.++..-.
T Consensus        94 ~~~~~~lL~~eP~n~QA~~Lk  114 (126)
T 1nzn_A           94 LKYVRGLLQTEPQNNQAKELE  114 (126)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHH
Confidence            999999999999999886543

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.23  E-value=1.2e-06  Score=79.38  Aligned_cols=110  Identities=7%  Similarity=0.047  Sum_probs=89.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCCH-----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------
Q 024536          134 KESESMDVYYQEMIKAYPEDA-----------------LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN------  190 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~-----------------~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~------  190 (266)
                      +++++|++.|+++++.+|...                 .++.++|.++. ..|++++|..+|++++...+....      
T Consensus        18 ~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   96 (434)
T 4b4t_Q           18 KQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYV-TMGAKDKLREFIPHSTEYMMQFAKSKTVKV   96 (434)
T ss_dssp             TCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHTHHHHHTSCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHccchHHHHH
Confidence            689999999999999999864                 35888998876 589999999999999997665432      


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCcccccc
Q 024536          191 VLSMYGDLIWINHKDAPRAKSYFDRAVHSAPD------DCHVLASYARFLWDAGEEEDDDD  245 (266)
Q Consensus       191 al~nla~ll~~~~gd~deAi~~~ekAL~l~P~------da~a~~~lA~ll~~~G~~~eA~~  245 (266)
                      +..+++.++ ...+++++|+.++++++...+.      .+.++..+|.++...|++++|.+
T Consensus        97 ~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  156 (434)
T 4b4t_Q           97 LKTLIEKFE-QVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLA  156 (434)
T ss_dssp             HHHHHHHHC-SCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHH
Confidence            344556554 3478999999999999987543      35678899999999999999984

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.22  E-value=1.1e-06  Score=84.01  Aligned_cols=77  Identities=8%  Similarity=0.039  Sum_probs=66.2

Q ss_pred             cCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH---HHHHHH
Q 024536          168 RGDFVKAEEYCGRAILA-----KPGDG---NVLSMYGDLIWINHKDAPRAKSYFDRAVHS-----APDDCH---VLASYA  231 (266)
Q Consensus       168 ~gd~e~A~~~~erAL~l-----dP~da---~al~nla~ll~~~~gd~deAi~~~ekAL~l-----~P~da~---a~~~lA  231 (266)
                      .|+|++|+.+|+++|++     .|+++   .++.++|.+|.. +|+|++|+.+|+++|++     -|+++.   .++++|
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~-~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLY-MQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            47899999999999994     57776   567889998876 89999999999999976     456555   588999


Q ss_pred             HHHHHcCCcccccc
Q 024536          232 RFLWDAGEEEDDDD  245 (266)
Q Consensus       232 ~ll~~~G~~~eA~~  245 (266)
                      .+|+.+|++++|+.
T Consensus       390 ~~~~~qg~~~eA~~  403 (433)
T 3qww_A          390 RLYMGLENKAAGEK  403 (433)
T ss_dssp             HHHHHTTCHHHHHH
T ss_pred             HHHHhccCHHHHHH
Confidence            99999999999994

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.17  E-value=2.1e-06  Score=86.47  Aligned_cols=122  Identities=11%  Similarity=0.043  Sum_probs=101.5

Q ss_pred             CCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024536          134 KESESMDVYYQEMIKA-YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY  212 (266)
Q Consensus       134 ~~~eeA~~~y~rALel-~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~  212 (266)
                      ++.+.|.+.|.+|++. .+....+|..+|.+-+...++++.|.+.|+++|+..|+++..|..|+.+... .++.++|..+
T Consensus       448 ~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~-~~~~~~AR~l  526 (679)
T 4e6h_A          448 QGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIY-VNEESQVKSL  526 (679)
T ss_dssp             HCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHh-CCCHHHHHHH
Confidence            4578999999999998 5556778887776554333568999999999999999999999999988766 6899999999


Q ss_pred             HHHHHHhCCC---CHHHHHHHHHHHHHcCCcccccccccccccCCCC
Q 024536          213 FDRAVHSAPD---DCHVLASYARFLWDAGEEEDDDDGDDQETCASQP  256 (266)
Q Consensus       213 ~ekAL~l~P~---da~a~~~lA~ll~~~G~~~eA~~~~~~~~~~~~~  256 (266)
                      |++|+...|+   ...+|..+..+-...|+.+.+.++.+...+.+|.
T Consensus       527 feral~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~  573 (679)
T 4e6h_A          527 FESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE  573 (679)
T ss_dssp             HHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            9999999984   5567889999999999999888777666666654

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.16  E-value=6e-06  Score=76.00  Aligned_cols=106  Identities=8%  Similarity=0.005  Sum_probs=67.2

Q ss_pred             CCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHH--HHHHHHHcC
Q 024536          134 KESESMDVYYQEMIKAYP--EDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG-----DGNVLSMY--GDLIWINHK  204 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P--~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~-----da~al~nl--a~ll~~~~g  204 (266)
                      +++++|+++|.+.|..+|  ++.+++..++.++. .+|+.+.|.+.++++.+.+|+     +.. +..+  +++... +|
T Consensus       114 g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L-~~~r~d~A~k~l~~~~~~~~d~~~~~d~~-l~~Laea~v~l~-~g  190 (310)
T 3mv2_B          114 GDLDKSLETCVEGIDNDEAEGTTELLLLAIEVAL-LNNNVSTASTIFDNYTNAIEDTVSGDNEM-ILNLAESYIKFA-TN  190 (310)
T ss_dssp             TCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSCHHHHHHHHH-HHHHHHHHHHHH-HT
T ss_pred             CCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCccccccchHH-HHHHHHHHHHHH-hC
Confidence            567777777777777776  66666666666654 467777777777777777773     332 2233  333332 23


Q ss_pred             --CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCcccccc
Q 024536          205 --DAPRAKSYFDRAVHSAPD--DCHVLASYARFLWDAGEEEDDDD  245 (266)
Q Consensus       205 --d~deAi~~~ekAL~l~P~--da~a~~~lA~ll~~~G~~~eA~~  245 (266)
                        ++.+|..+|+++....|+  ....+.+   ++..+|++++|++
T Consensus       191 ~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~  232 (310)
T 3mv2_B          191 KETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQG  232 (310)
T ss_dssp             CSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHH
Confidence              677777777777666665  2333333   6777777777774

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.15  E-value=3.9e-06  Score=77.28  Aligned_cols=115  Identities=14%  Similarity=0.109  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024536          139 MDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKP--GDGNVLSMYGDLIWINHKDAPRAKSYFDRA  216 (266)
Q Consensus       139 A~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP--~da~al~nla~ll~~~~gd~deAi~~~ekA  216 (266)
                      |+..|++.++..+....++..+|.++. ..|++++|++++.++|..+|  ++.+++...+.++.. .++.+.|.+.++++
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~-~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~-~~r~d~A~k~l~~~  162 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQA-ILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALL-NNNVSTASTIFDNY  162 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHH-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHH-HcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHH-CCCHHHHHHHHHHH
Confidence            677888888887777778888888776 57999999999999999997  889999988888876 89999999999999


Q ss_pred             HHhCCC-----CH-HHHHHHHHHHHHcC--CcccccccccccccCCC
Q 024536          217 VHSAPD-----DC-HVLASYARFLWDAG--EEEDDDDGDDQETCASQ  255 (266)
Q Consensus       217 L~l~P~-----da-~a~~~lA~ll~~~G--~~~eA~~~~~~~~~~~~  255 (266)
                      .+.+|+     +. .....-+++.+..|  ++++|..+.++....+|
T Consensus       163 ~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p  209 (310)
T 3mv2_B          163 TNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFP  209 (310)
T ss_dssp             HHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSC
T ss_pred             HhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCC
Confidence            999993     33 23333355566666  88888866554544444

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.14  E-value=3.5e-06  Score=81.69  Aligned_cols=78  Identities=15%  Similarity=0.238  Sum_probs=67.2

Q ss_pred             HcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH---HHHHH
Q 024536          167 IRGDFVKAEEYCGRAILA-----KPGDG---NVLSMYGDLIWINHKDAPRAKSYFDRAVHS-----APDDCH---VLASY  230 (266)
Q Consensus       167 ~~gd~e~A~~~~erAL~l-----dP~da---~al~nla~ll~~~~gd~deAi~~~ekAL~l-----~P~da~---a~~~l  230 (266)
                      .+|+|++|+.+|+++|++     .|+++   .++.++|.+|.. +|+|++|+.++++||++     -|+++.   .++++
T Consensus       321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~-~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL  399 (490)
T 3n71_A          321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSY-LQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA  399 (490)
T ss_dssp             TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            479999999999999985     46665   568889988876 89999999999999976     466655   58899


Q ss_pred             HHHHHHcCCcccccc
Q 024536          231 ARFLWDAGEEEDDDD  245 (266)
Q Consensus       231 A~ll~~~G~~~eA~~  245 (266)
                      |.+|+.+|++++|+.
T Consensus       400 a~~~~~~G~~~eA~~  414 (490)
T 3n71_A          400 GLTNWHAGHIEVGHG  414 (490)
T ss_dssp             HHHHHHTTCHHHHHH
T ss_pred             HHHHHHCCCHHHHHH
Confidence            999999999999994

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.10  E-value=7.5e-06  Score=74.18  Aligned_cols=111  Identities=7%  Similarity=-0.004  Sum_probs=90.3

Q ss_pred             CCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHH
Q 024536          133 GKESESMDVYYQEMIKAYPE------DALVLANYAKFLKEIRGDFVKAEEYCGRAILA------KPGDGNVLSMYGDLIW  200 (266)
Q Consensus       133 ~~~~eeA~~~y~rALel~P~------~~~al~nlA~~L~~~~gd~e~A~~~~erAL~l------dP~da~al~nla~ll~  200 (266)
                      .+++++|+.+|++++...+.      .+.++.++|.++. ..|++++|..++++++..      .+...+++.+.+.++.
T Consensus       108 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (434)
T 4b4t_Q          108 PDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHY-QKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYH  186 (434)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHH-HccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence            36789999999999987543      3678899999876 589999999999999986      4455688999999887


Q ss_pred             HHcCCHHHHHHHHHHHHHhCC---CC----HHHHHHHHHHHHHcCCcccccc
Q 024536          201 INHKDAPRAKSYFDRAVHSAP---DD----CHVLASYARFLWDAGEEEDDDD  245 (266)
Q Consensus       201 ~~~gd~deAi~~~ekAL~l~P---~d----a~a~~~lA~ll~~~G~~~eA~~  245 (266)
                      . .+++++|+.+|++|+.+.+   +.    +.++..++.++...+++++|..
T Consensus       187 ~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~  237 (434)
T 4b4t_Q          187 K-LRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFS  237 (434)
T ss_dssp             H-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHH
T ss_pred             H-hCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            6 8999999999999998864   23    2456677888888888888873

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.95  E-value=2.7e-05  Score=84.14  Aligned_cols=84  Identities=14%  Similarity=0.013  Sum_probs=65.1

Q ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 024536          151 PEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASY  230 (266)
Q Consensus       151 P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~l  230 (266)
                      .+.+.+|++||.++. ..|++++|+.+|.+|     +|+..|...+.++.+ .|++++|+++|++|++..++. .+...+
T Consensus      1102 vn~p~vWsqLAKAql-~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~-lGkyEEAIeyL~mArk~~~e~-~Idt~L 1173 (1630)
T 1xi4_A         1102 CNEPAVWSQLAKAQL-QKGMVKEAIDSYIKA-----DDPSSYMEVVQAANT-SGNWEELVKYLQMARKKARES-YVETEL 1173 (1630)
T ss_pred             cCCHHHHHHHHHHHH-hCCCHHHHHHHHHhc-----CChHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhcccc-cccHHH
Confidence            577899999998775 689999999999886     888999999988765 799999999999999888542 233346


Q ss_pred             HHHHHHcCCccc
Q 024536          231 ARFLWDAGEEED  242 (266)
Q Consensus       231 A~ll~~~G~~~e  242 (266)
                      |..|.+.++.++
T Consensus      1174 afaYAKl~rlee 1185 (1630)
T 1xi4_A         1174 IFALAKTNRLAE 1185 (1630)
T ss_pred             HHHHHhhcCHHH
Confidence            666666655553

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.93  E-value=1.3e-05  Score=76.22  Aligned_cols=78  Identities=12%  Similarity=-0.021  Sum_probs=66.9

Q ss_pred             HcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH---HHHHH
Q 024536          167 IRGDFVKAEEYCGRAILA-----KPGDG---NVLSMYGDLIWINHKDAPRAKSYFDRAVHS-----APDDCH---VLASY  230 (266)
Q Consensus       167 ~~gd~e~A~~~~erAL~l-----dP~da---~al~nla~ll~~~~gd~deAi~~~ekAL~l-----~P~da~---a~~~l  230 (266)
                      .+|++++|+.+|++++++     .|+++   .++.++|.++.. +|++++|+.++++++++     -|+++.   .++++
T Consensus       299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~-~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL  377 (429)
T 3qwp_A          299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACIN-LGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV  377 (429)
T ss_dssp             HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred             hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence            479999999999999984     46665   568889988876 79999999999999976     366665   58899


Q ss_pred             HHHHHHcCCcccccc
Q 024536          231 ARFLWDAGEEEDDDD  245 (266)
Q Consensus       231 A~ll~~~G~~~eA~~  245 (266)
                      |.+|+.+|++++|+.
T Consensus       378 a~~~~~~g~~~eA~~  392 (429)
T 3qwp_A          378 GKLQLHQGMFPQAMK  392 (429)
T ss_dssp             HHHHHHTTCHHHHHH
T ss_pred             HHHHHhcCCHHHHHH
Confidence            999999999999994

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=97.79  E-value=9.2e-05  Score=71.25  Aligned_cols=110  Identities=15%  Similarity=0.072  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-----------------
Q 024536          136 SESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDL-----------------  198 (266)
Q Consensus       136 ~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~l-----------------  198 (266)
                      .+++...|++||...|..+.+|.+|+.++. ..++.++|...|++|+.. |.+...+..++.+                 
T Consensus       195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~-~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~  272 (493)
T 2uy1_A          195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLI-GIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMG  272 (493)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC--
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhh
Confidence            466788999999999999999999999875 589999999999999999 9987666555543                 


Q ss_pred             -----------------------HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-Ccccccccccc
Q 024536          199 -----------------------IWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAG-EEEDDDDGDDQ  249 (266)
Q Consensus       199 -----------------------l~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G-~~~eA~~~~~~  249 (266)
                                             ..+ .++.++|..+|++| ...+....++...|.+-+..+ +.+.|.++.+.
T Consensus       273 ~~~~~~~~~~~~~~~lw~~y~~~~~r-~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~  345 (493)
T 2uy1_A          273 EAESAEKVFSKELDLLRINHLNYVLK-KRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSS  345 (493)
T ss_dssp             --------CHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred             ccchhhhhcccccHHHHHHHHHHHHH-cCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence                                   111 34578888888888 332335566666666666555 36666655443

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.76  E-value=4e-05  Score=63.73  Aligned_cols=76  Identities=13%  Similarity=-0.004  Sum_probs=68.1

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCccccc
Q 024536          170 DFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHK---DAPRAKSYFDRAVHSA-P-DDCHVLASYARFLWDAGEEEDDD  244 (266)
Q Consensus       170 d~e~A~~~~erAL~ldP~da~al~nla~ll~~~~g---d~deAi~~~ekAL~l~-P-~da~a~~~lA~ll~~~G~~~eA~  244 (266)
                      ++..+++.|.+++..+|.+.++.++||+++.+ ..   ++++|+.+|+..++.+ | ++.++++++|..+.+.+++++|.
T Consensus        13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~-S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~   91 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR-SKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL   91 (152)
T ss_dssp             HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence            35788899999999999999999999999976 45   6789999999999999 7 66889999999999999999999


Q ss_pred             cc
Q 024536          245 DG  246 (266)
Q Consensus       245 ~~  246 (266)
                      +.
T Consensus        92 ~y   93 (152)
T 1pc2_A           92 KY   93 (152)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=97.73  E-value=0.0003  Score=67.64  Aligned_cols=111  Identities=11%  Similarity=0.087  Sum_probs=88.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHH----------------------------------------HHHHcCCHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKF----------------------------------------LKEIRGDFVK  173 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~----------------------------------------L~~~~gd~e~  173 (266)
                      ++.++|...|++|+.. |.+..+|..|+.+                                        +. ..++.++
T Consensus       227 ~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~-r~~~~~~  304 (493)
T 2uy1_A          227 GQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVL-KKRGLEL  304 (493)
T ss_dssp             TCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHH-HHHCHHH
T ss_pred             CCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHH-HcCCHHH
Confidence            4679999999999999 9988777766654                                        11 2456889


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccccc
Q 024536          174 AEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGD  247 (266)
Q Consensus       174 A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~  247 (266)
                      |...|++| ...+....+|...|.+-+...++.++|..+|+++++.-|+++..+..|+.+....|+.+.|..+.
T Consensus       305 AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~  377 (493)
T 2uy1_A          305 FRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALF  377 (493)
T ss_dssp             HHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999 44334667777777666665568999999999999999999998888999988988888776443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.72  E-value=8.6e-05  Score=80.26  Aligned_cols=93  Identities=16%  Similarity=0.112  Sum_probs=77.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +.+++|.++|+++-    .+..+.    ..+.+..+++++|.++++++     +++.+|+.+|.++.. .|++++|+.+|
T Consensus      1063 glyEEAf~IYkKa~----~~~~A~----~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~-~G~~kEAIdsY 1128 (1630)
T 1xi4_A         1063 ELFEEAFAIFRKFD----VNTSAV----QVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQ-KGMVKEAIDSY 1128 (1630)
T ss_pred             CCHHHHHHHHHHcC----CHHHHH----HHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHh-CCCHHHHHHHH
Confidence            78999999999972    222221    23334568899999999876     779999999999876 89999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCcccccc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDD  245 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~  245 (266)
                      .+|     +++..+...+.++.+.|++++|++
T Consensus      1129 iKA-----dD~say~eVa~~~~~lGkyEEAIe 1155 (1630)
T 1xi4_A         1129 IKA-----DDPSSYMEVVQAANTSGNWEELVK 1155 (1630)
T ss_pred             Hhc-----CChHHHHHHHHHHHHcCCHHHHHH
Confidence            887     889999999999999999999995

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.58  E-value=0.00029  Score=58.04  Aligned_cols=95  Identities=14%  Similarity=-0.066  Sum_probs=75.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEI--RGDFVKAEEYCGRAILAKPG-DGNVLSMYGDLIWINHKDAPRAK  210 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~--~gd~e~A~~~~erAL~ldP~-da~al~nla~ll~~~~gd~deAi  210 (266)
                      .+....++-|.+-+. +.-.+.+.++||+.|...  ..+..+++.+++..+..+|. .-+.++.+|..+++ .|+|++|.
T Consensus        20 eeL~~lr~qY~~E~~-~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~yk-l~~Y~~Ar   97 (144)
T 1y8m_A           20 QQLEILRQQVVSEGG-PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK-LGEYSMAK   97 (144)
T ss_dssp             HHHHHHHHHHHHTTS-TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHT-TTCHHHHH
T ss_pred             HHHHHHHHHHHHhcc-CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHH-hhhHHHHH
Confidence            455666666665422 466789999999988532  23567899999999999995 55788889988887 79999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHH
Q 024536          211 SYFDRAVHSAPDDCHVLASY  230 (266)
Q Consensus       211 ~~~ekAL~l~P~da~a~~~l  230 (266)
                      .|.+..|+.+|+|.++..-.
T Consensus        98 ~y~d~lL~~eP~n~QA~~Lk  117 (144)
T 1y8m_A           98 RYVDTLFEHERNNKQVGALK  117 (144)
T ss_dssp             HHHHHHHHTCCCCHHHHHHH
T ss_pred             HHHHHHHhcCCCcHHHHHHH
Confidence            99999999999998886433

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.57  E-value=0.00089  Score=55.88  Aligned_cols=101  Identities=15%  Similarity=0.100  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHHHHCCC--------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 024536          136 SESMDVYYQEMIKAYPE--------DALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAP  207 (266)
Q Consensus       136 ~eeA~~~y~rALel~P~--------~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~d  207 (266)
                      .++-...|++|++.-|-        ...+|..||.+.  ..+|.++|...|+.|+.+....+.+|..+|.+-.. +|+.+
T Consensus        35 l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~--ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiR-qgnl~  111 (161)
T 4h7y_A           35 LNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELK--AIQEPDDARDYFQMARANCKKFAFVHISFAQFELS-QGNVK  111 (161)
T ss_dssp             HHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHH--HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-cccHH
Confidence            36777899999999885        357888888763  35899999999999999988889999999998766 89999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 024536          208 RAKSYFDRAVHSAPDDCHVLASYARFLWDAGEE  240 (266)
Q Consensus       208 eAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~  240 (266)
                      +|...+.+|+.+.|...+.+.. |.--.+.|..
T Consensus       112 kARkILg~AiG~~~k~~~~le~-a~~nl~~~~~  143 (161)
T 4h7y_A          112 KSKQLLQKAVERGAVPLEMLEI-ALRNLNLQKK  143 (161)
T ss_dssp             HHHHHHHHHHHTTCBCHHHHHH-HHHHHHTTCS
T ss_pred             HHHHHHHHHhccCCCcHHHHHH-HHHhhhcCCC
Confidence            9999999999999998877543 2333444443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.52  E-value=0.00027  Score=59.02  Aligned_cols=97  Identities=19%  Similarity=0.163  Sum_probs=79.7

Q ss_pred             HHHCCCCHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHHcCCHHHHHHH
Q 024536          147 IKAYPEDALVLANYAKFLKEIRGDF------VKAEEYCGRAILAKPGD--------GNVLSMYGDLIWINHKDAPRAKSY  212 (266)
Q Consensus       147 Lel~P~~~~al~nlA~~L~~~~gd~------e~A~~~~erAL~ldP~d--------a~al~nla~ll~~~~gd~deAi~~  212 (266)
                      |-+.|++++.|.+|...+. ..|+.      ++-...|+||+..-|-.        ...|..||.+. . .+|.++|..+
T Consensus         6 ~~~~p~~yd~W~~yl~llE-~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~-e-i~D~d~aR~v   82 (161)
T 4h7y_A            6 IMMMANNPEDWLSLLLKLE-KNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELK-A-IQEPDDARDY   82 (161)
T ss_dssp             ----CCSHHHHHHHHHHHH-HHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHH-H-HHCGGGCHHH
T ss_pred             eeeCCCCHHHHHHHHHHHH-HcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHH-H-hcCHHHHHHH
Confidence            3468999999999998775 45888      88899999999987753        35677788553 4 4899999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536          213 FDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       213 ~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      |+.|+.+....+-+|..+|.|-..+|+...|.++
T Consensus        83 y~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkI  116 (161)
T 4h7y_A           83 FQMARANCKKFAFVHISFAQFELSQGNVKKSKQL  116 (161)
T ss_dssp             HHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence            9999999888999999999999999999988853

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.48  E-value=0.00034  Score=57.00  Aligned_cols=95  Identities=14%  Similarity=-0.054  Sum_probs=74.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIR--GDFVKAEEYCGRAILAKPG-DGNVLSMYGDLIWINHKDAPRAK  210 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~--gd~e~A~~~~erAL~ldP~-da~al~nla~ll~~~~gd~deAi  210 (266)
                      .+....++-|.+=+ ...-.+.+.++||+.|....  .+..+++.+++..++.+|. .-+.++.+|+.+++ .|+|++|.
T Consensus        21 eeL~~l~~qy~~E~-~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yk-lgdY~~Ar   98 (134)
T 3o48_A           21 QQLEILRQQVVSEG-GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK-LGEYSMAK   98 (134)
T ss_dssp             HHHHHHHHHHHHTT-GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-HTCHHHHH
T ss_pred             HHHHHHHHHHHHHh-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHH-hhhHHHHH
Confidence            45566666665544 33346789999999885322  3567899999999999995 46889999999988 69999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHH
Q 024536          211 SYFDRAVHSAPDDCHVLASY  230 (266)
Q Consensus       211 ~~~ekAL~l~P~da~a~~~l  230 (266)
                      .+.+++++++|+|.+|..-.
T Consensus        99 ~y~d~lL~~eP~N~QA~~Lk  118 (134)
T 3o48_A           99 RYVDTLFEHERNNKQVGALK  118 (134)
T ss_dssp             HHHHHHHTTCTTCHHHHHHH
T ss_pred             HHHHHHHhhCCCCHHHHHHH
Confidence            99999999999999886433

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.42  E-value=8.7e-05  Score=71.51  Aligned_cols=78  Identities=13%  Similarity=0.024  Sum_probs=40.2

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCCc
Q 024536          167 IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINH-KDAPRAKSYFDRAVHSAP-----DDCHVLASYARFLWDAGEE  240 (266)
Q Consensus       167 ~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~-gd~deAi~~~ekAL~l~P-----~da~a~~~lA~ll~~~G~~  240 (266)
                      ..|.+++|..++++++.+++.+..++..+|+++.+.+ ++..++++.|...+.+.|     .++..|..+..+|.+.+++
T Consensus       219 k~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~  298 (449)
T 1b89_A          219 DRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEY  298 (449)
T ss_dssp             HTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCH
T ss_pred             HCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchH
Confidence            3455555555555555555555555555555443221 233444444444555555     4555555555555555665


Q ss_pred             cccc
Q 024536          241 EDDD  244 (266)
Q Consensus       241 ~eA~  244 (266)
                      +.|+
T Consensus       299 d~A~  302 (449)
T 1b89_A          299 DNAI  302 (449)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5555

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.32  E-value=0.00053  Score=66.04  Aligned_cols=92  Identities=10%  Similarity=0.059  Sum_probs=58.5

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH------------
Q 024536          132 SGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLI------------  199 (266)
Q Consensus       132 ~~~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll------------  199 (266)
                      ..+.+++|..+|.++        ..|..+|.++. ..|++++|.+.|++|     +++.+|.....++            
T Consensus       134 ~~g~yeeA~~~Y~~a--------~n~~~LA~~L~-~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~  199 (449)
T 1b89_A          134 DEKMYDAAKLLYNNV--------SNFGRLASTLV-HLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMC  199 (449)
T ss_dssp             ---CTTTHHHHHHHT--------TCHHHHHHHHH-TTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHT
T ss_pred             HcCCHHHHHHHHHHh--------hhHHHHHHHHH-HhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHH
Confidence            346777888888766        35666777665 467788888877777     3555544433222            


Q ss_pred             -----------------HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 024536          200 -----------------WINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDA  237 (266)
Q Consensus       200 -----------------~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~  237 (266)
                                       ++..|++++|+.++++++.+++....++..+|.++.+-
T Consensus       200 ~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky  254 (449)
T 1b89_A          200 GLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF  254 (449)
T ss_dssp             TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred             HHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc
Confidence                             23357777777777777777777777777776665543

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=96.80  E-value=0.0056  Score=59.52  Aligned_cols=80  Identities=18%  Similarity=0.154  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 024536          156 VLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLW  235 (266)
Q Consensus       156 al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~  235 (266)
                      .+.++|++.. .+..+..|..+|.+|+.++|++...|+.+|++... +++.-+|+-||-|++......+.+..++..++-
T Consensus       154 ~l~~LGDL~R-Y~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~-~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~  231 (497)
T 1ya0_A          154 CLVHLGDIAR-YRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS-KGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS  231 (497)
T ss_dssp             HHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH-TTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred             HHHHcccHHH-HHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhc-ccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence            4566787654 56889999999999999999999999999987754 899999999999999999889999999998877


Q ss_pred             Hc
Q 024536          236 DA  237 (266)
Q Consensus       236 ~~  237 (266)
                      ..
T Consensus       232 ~~  233 (497)
T 1ya0_A          232 KA  233 (497)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.74  E-value=0.0062  Score=51.23  Aligned_cols=97  Identities=11%  Similarity=0.013  Sum_probs=62.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC-------------
Q 024536          134 KESESMDVYYQEMIKAYPEDAL---------VLANYAKFLKEIRGDFVKAEEYCGRAILAK---PGD-------------  188 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~---------al~nlA~~L~~~~gd~e~A~~~~erAL~ld---P~d-------------  188 (266)
                      +.|+.|+.++..++.+..++++         ++..+|+.++ .+++|.+|+.+|++||.+.   +.+             
T Consensus        34 ~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf-~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~  112 (167)
T 3ffl_A           34 GLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLF-HDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSAST  112 (167)
T ss_dssp             TCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHCC----------------
T ss_pred             hhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCC
Confidence            6899999999887777544443         7788899887 5899999999999997742   212             


Q ss_pred             ---------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 024536          189 ---------GNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARF  233 (266)
Q Consensus       189 ---------a~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~l  233 (266)
                               .++.+.++.++.. .+++++|+..++..-. .-..+.+...||.+
T Consensus       113 p~s~~~~~e~Elkykia~C~~~-l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~LakL  164 (167)
T 3ffl_A          113 PQSQCLPSEIEVKYKLAECYTV-LKQDKDAIAILDGIPS-RQRTPKINMLLANL  164 (167)
T ss_dssp             ----CCCCHHHHHHHHHHHHHH-TTCHHHHHHHHHTSCG-GGCCHHHHHHHHHH
T ss_pred             cccccccchHHHHHHHHHHHHH-HCCHHHHHHHHhcCCc-hhcCHHHHHHHHHH
Confidence                     2455566665554 5566666666554211 11234444444444

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.69  E-value=0.0045  Score=52.09  Aligned_cols=79  Identities=13%  Similarity=0.068  Sum_probs=64.5

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----------------
Q 024536          167 IRGDFVKAEEYCGRAILAKPGDGN---------VLSMYGDLIWINHKDAPRAKSYFDRAVHSAP----------------  221 (266)
Q Consensus       167 ~~gd~e~A~~~~erAL~ldP~da~---------al~nla~ll~~~~gd~deAi~~~ekAL~l~P----------------  221 (266)
                      ..+.|+-|+.....++.+..++++         ++..+|.+++. +++|.+|+.+|++||.+.-                
T Consensus        32 d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~-~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~s  110 (167)
T 3ffl_A           32 AAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFH-DKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSA  110 (167)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHCC--------------
T ss_pred             HhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHHHHHhcCCCccccccccC
Confidence            468999999999998887644444         78889999988 8999999999999865432                


Q ss_pred             ---------CCHHHHHHHHHHHHHcCCccccccc
Q 024536          222 ---------DDCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       222 ---------~da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                               .+.++.+.+|.++.+.+++++|+.+
T Consensus       111 s~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~  144 (167)
T 3ffl_A          111 STPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAI  144 (167)
T ss_dssp             ------CCCCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCcccccccchHHHHHHHHHHHHHHCCHHHHHHH
Confidence                     1236889999999999999999954

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=96.57  E-value=0.025  Score=51.08  Aligned_cols=62  Identities=27%  Similarity=0.248  Sum_probs=55.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYG  196 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla  196 (266)
                      +.+++|++.+...|+.+|.|+.....|-.+|. ..|++++|.+-++-+.+++|+.......|-
T Consensus        11 g~L~~al~~~~~~VR~~P~da~~R~~LfqLLc-v~G~w~RA~~QL~~~a~l~p~~~~~a~~yr   72 (273)
T 1zbp_A           11 GQLQQALELLIEAIKASPKDASLRSSFIELLC-IDGDFERADEQLMQSIKLFPEYLPGASQLR   72 (273)
T ss_dssp             TCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCchhhHHHHHHH
Confidence            57899999999999999999999999998887 689999999999999999999876544443

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=96.57  E-value=0.034  Score=53.50  Aligned_cols=111  Identities=14%  Similarity=-0.044  Sum_probs=86.7

Q ss_pred             CCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPE-DALVLANYAKFLKEIRGDFVKAEEYCGRAILAK--PGDGNVLSMYGDLIWINHKDAPRAK  210 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~-~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ld--P~da~al~nla~ll~~~~gd~deAi  210 (266)
                      +..++|.++|+++.+..-. |...|+.+-..+. ..|++++|..+|++..+..  | |...|..+-..+.+ .|+.++|.
T Consensus        84 ~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~-~~g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~-~g~~~~A~  160 (501)
T 4g26_A           84 PGLSRGFDIFKQMIVDKVVPNEATFTNGARLAV-AKDDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFCR-KGDADKAY  160 (501)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHH-TTCHHHHH
T ss_pred             chHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCC-ccceehHHHHHHHH-CCCHHHHH
Confidence            4689999999999887432 5566666655554 5799999999999998863  5 46666666666655 89999999


Q ss_pred             HHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcccccccc
Q 024536          211 SYFDRAVHSAP-DDCHVLASYARFLWDAGEEEDDDDGD  247 (266)
Q Consensus       211 ~~~ekAL~l~P-~da~a~~~lA~ll~~~G~~~eA~~~~  247 (266)
                      .+|++..+..- -+...+..+..++.+.|+.++|.+.-
T Consensus       161 ~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll  198 (501)
T 4g26_A          161 EVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTL  198 (501)
T ss_dssp             HHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHH
Confidence            99999988643 25667888999999999999999653

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.47  E-value=0.0038  Score=50.20  Aligned_cols=67  Identities=12%  Similarity=0.034  Sum_probs=55.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHC-C-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024536          129 DGDSGKESESMDVYYQEMIKAY-P-EDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYG  196 (266)
Q Consensus       129 ~~~~~~~~eeA~~~y~rALel~-P-~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla  196 (266)
                      +.....+..+++.+++..+..+ | ..-+.++.+|...+ ..|+|++|..+++..|+.+|+|..+.....
T Consensus        47 ~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~y-klg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~  115 (126)
T 1nzn_A           47 RTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY-RLKEYEKALKYVRGLLQTEPQNNQAKELER  115 (126)
T ss_dssp             TSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            3345567788999999999987 6 56688999998777 589999999999999999999999876444

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.26  E-value=0.017  Score=58.94  Aligned_cols=109  Identities=13%  Similarity=0.055  Sum_probs=77.8

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH--------hCCCCHH----------HHHHH
Q 024536          135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEI-RGDFVKAEEYCGRAIL--------AKPGDGN----------VLSMY  195 (266)
Q Consensus       135 ~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~-~gd~e~A~~~~erAL~--------ldP~da~----------al~nl  195 (266)
                      -++.|+.++++..+.+|.....+...-..+... ..+--+|.....++++        +.+.+..          .+..=
T Consensus       264 ~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Q  343 (754)
T 4gns_B          264 LVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQ  343 (754)
T ss_dssp             GHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHH
Confidence            368899999999999998764332221111111 1223456666666664        2344432          33333


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536          196 GDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDD  244 (266)
Q Consensus       196 a~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~  244 (266)
                      +.++.. +++++-|+.+-++|+...|.+-..|+.|+.+|..+|+++.|+
T Consensus       344 a~FLl~-K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~AL  391 (754)
T 4gns_B          344 TNFLLN-RGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKAL  391 (754)
T ss_dssp             HHHHHH-TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHhc-cCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHH
Confidence            555655 899999999999999999999999999999999999999998

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=95.95  E-value=0.076  Score=51.03  Aligned_cols=115  Identities=9%  Similarity=-0.004  Sum_probs=83.8

Q ss_pred             CCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPE-DALVLANYAKFLKE--------IRGDFVKAEEYCGRAILAK--PGDGNVLSMYGDLIWIN  202 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~-~~~al~nlA~~L~~--------~~gd~e~A~~~~erAL~ld--P~da~al~nla~ll~~~  202 (266)
                      ++.++|.++|+++.+..-. +...|+.+=.++..        ..+++++|.+.|++.....  | |...|..+...+.+ 
T Consensus        40 G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~P-d~~tyn~lI~~~~~-  117 (501)
T 4g26_A           40 GDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVP-NEATFTNGARLAVA-  117 (501)
T ss_dssp             CCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHH-
T ss_pred             CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHh-
Confidence            6899999999999987422 33444433222210        0123789999999988864  4 56677777777766 


Q ss_pred             cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCccccccccccc
Q 024536          203 HKDAPRAKSYFDRAVHSA-PDDCHVLASYARFLWDAGEEEDDDDGDDQE  250 (266)
Q Consensus       203 ~gd~deAi~~~ekAL~l~-P~da~a~~~lA~ll~~~G~~~eA~~~~~~~  250 (266)
                      .|++++|+.+|++..+.. .-+...+..+-..|...|+.++|.++.+.+
T Consensus       118 ~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M  166 (501)
T 4g26_A          118 KDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM  166 (501)
T ss_dssp             HTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence            799999999999988763 225677888889999999999999775443

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=95.67  E-value=0.045  Score=44.90  Aligned_cols=65  Identities=9%  Similarity=0.009  Sum_probs=55.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024536          131 DSGKESESMDVYYQEMIKAYPED-ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYG  196 (266)
Q Consensus       131 ~~~~~~eeA~~~y~rALel~P~~-~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla  196 (266)
                      ....+..+++.+++..+..+|.. -+.++.+|...+ ..|+|++|.++.+..|+.+|+|..+.....
T Consensus        53 ~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~y-kl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~  118 (144)
T 1y8m_A           53 TDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCY-KLGEYSMAKRYVDTLFEHERNNKQVGALKS  118 (144)
T ss_dssp             SSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHH-HhhhHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            34567889999999999999954 578888888776 589999999999999999999998875433

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=95.67  E-value=0.034  Score=45.09  Aligned_cols=65  Identities=9%  Similarity=0.009  Sum_probs=55.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024536          131 DSGKESESMDVYYQEMIKAYPED-ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYG  196 (266)
Q Consensus       131 ~~~~~~eeA~~~y~rALel~P~~-~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla  196 (266)
                      ....+..+++.++...++.+|.. -+.++.+|...+ ..|+|++|.++.++.|+..|+|..+.....
T Consensus        54 ~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~y-klgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~  119 (134)
T 3o48_A           54 TDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCY-KLGEYSMAKRYVDTLFEHERNNKQVGALKS  119 (134)
T ss_dssp             SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHH-HhhhHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence            34467889999999999999954 678888888776 579999999999999999999999876444

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.09  E-value=0.22  Score=46.20  Aligned_cols=83  Identities=8%  Similarity=0.008  Sum_probs=61.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHH----------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDAL----------------------VLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNV  191 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~----------------------al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~a  191 (266)
                      ++.++|.+.|++|+.+.-..+.                      ++..++.++. ..|++++|...+++++..+|-+-.+
T Consensus       129 ~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l-~~g~~~~a~~~l~~~~~~~P~~E~~  207 (388)
T 2ff4_A          129 GRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEI-ACGRASAVIAELEALTFEHPYREPL  207 (388)
T ss_dssp             TCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHH
Confidence            3567777888888887533211                      1111222222 4799999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024536          192 LSMYGDLIWINHKDAPRAKSYFDRAVH  218 (266)
Q Consensus       192 l~nla~ll~~~~gd~deAi~~~ekAL~  218 (266)
                      |..+-.+++. .|+..+|+..|+++..
T Consensus       208 ~~~lm~al~~-~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          208 WTQLITAYYL-SDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHT-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence            9888888866 7999999999998755

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.66  E-value=0.1  Score=53.22  Aligned_cols=59  Identities=14%  Similarity=0.017  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024536          156 VLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRA  216 (266)
Q Consensus       156 al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekA  216 (266)
                      ++..-+.||. .+++++-|+.+.++|+.+.|.+-..|+.|+.+|.. .+||+.|+-.+.-+
T Consensus       339 LL~~Qa~FLl-~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~-l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLL-NRGDYELALGVSNTSTELALDSFESWYNLARCHIK-KEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH-TTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHh-ccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHH-hccHHHHHHHHhcC
Confidence            4444567776 58999999999999999999999999999999977 79999999665544

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=94.60  E-value=0.099  Score=50.73  Aligned_cols=66  Identities=15%  Similarity=0.193  Sum_probs=57.8

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIW  200 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~  200 (266)
                      ..+..|..+|++|+.++|++...|+.+|.+.. ..++.-+|.-+|-|++....-.+.+..|+..++.
T Consensus       166 ~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~-~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~  231 (497)
T 1ya0_A          166 NQTSQAESYYRHAAQLVPSNGQPYNQLAILAS-SKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS  231 (497)
T ss_dssp             TCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHH-HTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCCchHHHHHHHHh-cccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence            56789999999999999999999999998665 5789999999999999987778888888876654

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=94.53  E-value=0.17  Score=45.55  Aligned_cols=63  Identities=24%  Similarity=0.258  Sum_probs=55.6

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 024536          167 IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASY  230 (266)
Q Consensus       167 ~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~l  230 (266)
                      ..+++++|++..+..|+.+|.|+.....|..++.- .|++++|..-++.+.+++|+.......|
T Consensus         9 ~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv-~G~w~RA~~QL~~~a~l~p~~~~~a~~y   71 (273)
T 1zbp_A            9 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCI-DGDFERADEQLMQSIKLFPEYLPGASQL   71 (273)
T ss_dssp             TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCchhhHHHHHH
Confidence            36899999999999999999999999888887765 7999999999999999999876654444

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=94.48  E-value=0.13  Score=50.01  Aligned_cols=95  Identities=14%  Similarity=0.052  Sum_probs=56.6

Q ss_pred             CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH--------HHhCCCCHHHHHHHHHH------------HHHHcCCHHHH
Q 024536          150 YPEDALVLANYAKFLKEIRGDFVKAEEYCGRA--------ILAKPGDGNVLSMYGDL------------IWINHKDAPRA  209 (266)
Q Consensus       150 ~P~~~~al~nlA~~L~~~~gd~e~A~~~~erA--------L~ldP~da~al~nla~l------------l~~~~gd~deA  209 (266)
                      ..+++..|.++|.++. ..++++.|+.+|.++        |.....+.+.+..++..            ++...|++++|
T Consensus       677 ~~~~~~~W~~la~~al-~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a  755 (814)
T 3mkq_A          677 DESAEMKWRALGDASL-QRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGA  755 (814)
T ss_dssp             TCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHH
T ss_pred             hhCcHhHHHHHHHHHH-HcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHH
Confidence            4467888999998765 589999999999885        22224444433333221            22225677777


Q ss_pred             HHHHHH------HHH----hCCCC---HHHHHHHHHHHHHcCCcccccc
Q 024536          210 KSYFDR------AVH----SAPDD---CHVLASYARFLWDAGEEEDDDD  245 (266)
Q Consensus       210 i~~~ek------AL~----l~P~d---a~a~~~lA~ll~~~G~~~eA~~  245 (266)
                      +++|.+      |+.    ..|..   +.+...++.-+...|+.+.|..
T Consensus       756 ~~~~~~~~~~~~A~~lA~~~~~~~~~i~~~~~~~~~~L~~~~~~~~a~~  804 (814)
T 3mkq_A          756 KDLLIKSQRFSEAAFLGSTYGLGDNEVNDIVTKWKENLILNGKNTVSER  804 (814)
T ss_dssp             HHHHHHTTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTCHHHHTT
T ss_pred             HHHHHHcCChHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccchhHHHh
Confidence            776644      332    33433   2456667766777776544443

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=92.34  E-value=0.38  Score=44.53  Aligned_cols=51  Identities=6%  Similarity=-0.022  Sum_probs=44.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536          195 YGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       195 la~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      ++.++.. .|++++|+..+++++..+|-+-.++..+-.+|...|+..+|+++
T Consensus       177 ~~~~~l~-~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~  227 (388)
T 2ff4_A          177 KAEAEIA-CGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGA  227 (388)
T ss_dssp             HHHHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             HHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            3344444 79999999999999999999999999999999999999999854

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=91.95  E-value=1  Score=43.77  Aligned_cols=43  Identities=16%  Similarity=0.095  Sum_probs=33.4

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024536          168 RGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRA  216 (266)
Q Consensus       168 ~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekA  216 (266)
                      .|++++|.+++     ...++...|..+|..+.+ +++++.|+.+|.++
T Consensus       665 ~~~~~~A~~~~-----~~~~~~~~W~~la~~al~-~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          665 VGQLTLARDLL-----TDESAEMKWRALGDASLQ-RFNFKLAIEAFTNA  707 (814)
T ss_dssp             HTCHHHHHHHH-----TTCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHH
T ss_pred             cCCHHHHHHHH-----HhhCcHhHHHHHHHHHHH-cCCHHHHHHHHHHc
Confidence            35566665543     345788999999998876 89999999999986

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=89.45  E-value=2.3  Score=44.76  Aligned_cols=98  Identities=14%  Similarity=-0.003  Sum_probs=71.2

Q ss_pred             HHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---C--------------------CCCHHHHHHHHHHHHH
Q 024536          145 EMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILA---K--------------------PGDGNVLSMYGDLIWI  201 (266)
Q Consensus       145 rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~l---d--------------------P~da~al~nla~ll~~  201 (266)
                      ..+..-|.++-.-+.+|.++. ..|++++|..+|++|-.-   +                    ..-+..|..... +++
T Consensus       833 ~l~~~~~~~~~~~yl~g~~~L-~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~-LFe  910 (1139)
T 4fhn_B          833 QLIGWLNSDPIAVYLKALIYL-KSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSK-KLF  910 (1139)
T ss_dssp             HHHHHSCCCHHHHHHHHHHHH-HTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHH-HHH
T ss_pred             HHhhhccCCcHHHHHHHHHHH-hcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHH-HHH
Confidence            344567888877788888776 589999999999987321   0                    111233444444 445


Q ss_pred             HcCCHHHHHHHHHHHHHhCC-CCHH----HHHHHHHHHHHcCCccccc
Q 024536          202 NHKDAPRAKSYFDRAVHSAP-DDCH----VLASYARFLWDAGEEEDDD  244 (266)
Q Consensus       202 ~~gd~deAi~~~ekAL~l~P-~da~----a~~~lA~ll~~~G~~~eA~  244 (266)
                      ..+.++-|+++.+.||+..+ ++..    .|.++-....+.+++++|-
T Consensus       911 ~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay  958 (1139)
T 4fhn_B          911 EESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAH  958 (1139)
T ss_dssp             HTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGG
T ss_pred             HcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHH
Confidence            58999999999999999876 4442    5667778889999999996

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=88.27  E-value=5.1  Score=33.57  Aligned_cols=42  Identities=10%  Similarity=0.023  Sum_probs=33.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRA  181 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erA  181 (266)
                      ++++.|.+..+..     ++...|..+|.... ..|+++-|+.+|.++
T Consensus        19 g~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL-~~gn~~lAe~cy~~~   60 (177)
T 3mkq_B           19 GNLDAALDEAKKL-----NDSITWERLIQEAL-AQGNASLAEMIYQTQ   60 (177)
T ss_dssp             TCHHHHHHHHHHH-----CCHHHHHHHHHHHH-HTTCHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHh-----CCHHHHHHHHHHHH-HcCChHHHHHHHHHh
Confidence            5777777776654     78889999998765 579999999999875

>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*

Probab=86.40  E-value=1.6  Score=38.37  Aligned_cols=47  Identities=21%  Similarity=0.195  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHH-----HCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024536          137 ESMDVYYQEMIK-----AYPEDAL---VLANYAKFLKEIRGDFVKAEEYCGRAIL  183 (266)
Q Consensus       137 eeA~~~y~rALe-----l~P~~~~---al~nlA~~L~~~~gd~e~A~~~~erAL~  183 (266)
                      ++|..+|++|++     +.|.||.   +..|++.|+++..++.++|..+.++|+.
T Consensus       147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd  201 (234)
T 2br9_A          147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD  201 (234)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            345555555553     3455552   3345555555555665555555555443

>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...

Probab=86.19  E-value=1.6  Score=38.40  Aligned_cols=48  Identities=21%  Similarity=0.245  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHH-----HCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024536          136 SESMDVYYQEMIK-----AYPEDAL---VLANYAKFLKEIRGDFVKAEEYCGRAIL  183 (266)
Q Consensus       136 ~eeA~~~y~rALe-----l~P~~~~---al~nlA~~L~~~~gd~e~A~~~~erAL~  183 (266)
                      .+.|...|++|++     +.|.||.   +..|++.|+++..++.++|....++|+.
T Consensus       149 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd  204 (236)
T 3iqu_A          149 IDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFD  204 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4566667777654     4566763   4466677777767777776666665543

>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}

Probab=85.78  E-value=1.7  Score=38.76  Aligned_cols=47  Identities=19%  Similarity=0.195  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHH----HCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024536          137 ESMDVYYQEMIK----AYPEDAL---VLANYAKFLKEIRGDFVKAEEYCGRAIL  183 (266)
Q Consensus       137 eeA~~~y~rALe----l~P~~~~---al~nlA~~L~~~~gd~e~A~~~~erAL~  183 (266)
                      ++|..+|++|++    +.|.||.   +..|++.|+++..++.++|..+.++|+.
T Consensus       173 e~a~~aY~~A~~iA~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd  226 (260)
T 2npm_A          173 EDALKAYKDATVVAKDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFE  226 (260)
T ss_dssp             HHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            345555555554    3444552   3345555555555555555555555543

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=85.52  E-value=3.6  Score=34.49  Aligned_cols=55  Identities=13%  Similarity=0.070  Sum_probs=44.1

Q ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024536          152 EDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRA  216 (266)
Q Consensus       152 ~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekA  216 (266)
                      .|+...+.+|.    ..|+++.|.++.+..     ++...|..+|..... +|+++-|+.+|+++
T Consensus         6 ~D~~~rF~LAL----~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~-~gn~~lAe~cy~~~   60 (177)
T 3mkq_B            6 QDPHIRFDLAL----EYGNLDAALDEAKKL-----NDSITWERLIQEALA-QGNASLAEMIYQTQ   60 (177)
T ss_dssp             SCHHHHHHHHH----HTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHH-TTCHHHHHHHHHHT
T ss_pred             CChHHHHHHHH----hcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHH-cCChHHHHHHHHHh
Confidence            45666667764    479999999988765     778899999988766 89999999988875

>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*

Probab=85.50  E-value=1.8  Score=38.32  Aligned_cols=24  Identities=29%  Similarity=0.295  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHH
Q 024536          158 ANYAKFLKEIRGDFVKAEEYCGRA  181 (266)
Q Consensus       158 ~nlA~~L~~~~gd~e~A~~~~erA  181 (266)
                      .|++.|+++..++.++|..+.++|
T Consensus       177 LNfSVFyYEIln~~~~Ac~lAk~A  200 (248)
T 3uzd_A          177 LNYSVFYYEIQNAPEQACHLAKTA  200 (248)
T ss_dssp             HHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHH
Confidence            444444444444444444444443

>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}

Probab=85.45  E-value=4.5  Score=36.00  Aligned_cols=48  Identities=10%  Similarity=0.001  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHH----hCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024536          172 VKAEEYCGRAIL----AKPGDGN---VLSMYGDLIWINHKDAPRAKSYFDRAVHS  219 (266)
Q Consensus       172 e~A~~~~erAL~----ldP~da~---al~nla~ll~~~~gd~deAi~~~ekAL~l  219 (266)
                      ++|...|+.|+.    +.|.||-   ...|+++++++..++.++|..+.++|+.-
T Consensus       173 e~a~~aY~~A~~iA~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~  227 (260)
T 2npm_A          173 EDALKAYKDATVVAKDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEM  227 (260)
T ss_dssp             HHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            678889999986    5677773   45578899999899999999999988863

>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*

Probab=85.10  E-value=1.9  Score=38.42  Aligned_cols=46  Identities=22%  Similarity=0.243  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHH-----HCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024536          137 ESMDVYYQEMIK-----AYPEDAL---VLANYAKFLKEIRGDFVKAEEYCGRAI  182 (266)
Q Consensus       137 eeA~~~y~rALe-----l~P~~~~---al~nlA~~L~~~~gd~e~A~~~~erAL  182 (266)
                      ++|..+|+.|++     +.|.||.   +..|++.|+++..++.++|..+.++|+
T Consensus       152 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Af  205 (260)
T 1o9d_A          152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAF  205 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            455566666653     3556653   335566666666666666666555554

>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...

Probab=84.88  E-value=4.2  Score=35.68  Aligned_cols=48  Identities=10%  Similarity=0.012  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHH-----hCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024536          171 FVKAEEYCGRAIL-----AKPGDGN---VLSMYGDLIWINHKDAPRAKSYFDRAVH  218 (266)
Q Consensus       171 ~e~A~~~~erAL~-----ldP~da~---al~nla~ll~~~~gd~deAi~~~ekAL~  218 (266)
                      .+.|...|++|+.     +.|.||-   ...|+++++++..++.++|..+.++|+.
T Consensus       149 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd  204 (236)
T 3iqu_A          149 IDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFD  204 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3678888988875     6788884   4557889999989999999998888764

>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*

Probab=84.71  E-value=5.1  Score=35.64  Aligned_cols=48  Identities=10%  Similarity=-0.034  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHH-----hCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024536          172 VKAEEYCGRAIL-----AKPGDGN---VLSMYGDLIWINHKDAPRAKSYFDRAVHS  219 (266)
Q Consensus       172 e~A~~~~erAL~-----ldP~da~---al~nla~ll~~~~gd~deAi~~~ekAL~l  219 (266)
                      +.|...|+.|+.     +.|.||-   ...|++++++...++.++|..+.++|+.-
T Consensus       152 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~  207 (260)
T 1o9d_A          152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE  207 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            678889998885     5788884   45578899999899999999988888753

>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1

Probab=84.61  E-value=4.6  Score=35.29  Aligned_cols=48  Identities=15%  Similarity=-0.009  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHHH-----CCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024536          136 SESMDVYYQEMIKA-----YPEDA---LVLANYAKFLKEIRGDFVKAEEYCGRAIL  183 (266)
Q Consensus       136 ~eeA~~~y~rALel-----~P~~~---~al~nlA~~L~~~~gd~e~A~~~~erAL~  183 (266)
                      .+.|..+|+.|+++     .|.||   -+..|++.|+++..++.++|..+.++|+.
T Consensus       141 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd  196 (227)
T 2o8p_A          141 LEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGK  196 (227)
T ss_dssp             HHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            78889999988764     45555   56788888888888999999999999876

>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}

Probab=84.12  E-value=2.3  Score=37.99  Aligned_cols=46  Identities=22%  Similarity=0.228  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHH-----HCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024536          137 ESMDVYYQEMIK-----AYPEDAL---VLANYAKFLKEIRGDFVKAEEYCGRAI  182 (266)
Q Consensus       137 eeA~~~y~rALe-----l~P~~~~---al~nlA~~L~~~~gd~e~A~~~~erAL  182 (266)
                      +.|...|++|++     +.|.+|.   +..|++.|+++..++.++|..+.++|+
T Consensus       173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AF  226 (261)
T 3ubw_A          173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAF  226 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            344555555543     3455552   334555555555555555555444443

>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}

Probab=83.91  E-value=5.8  Score=35.31  Aligned_cols=47  Identities=11%  Similarity=-0.064  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHH-----hCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024536          172 VKAEEYCGRAIL-----AKPGDGN---VLSMYGDLIWINHKDAPRAKSYFDRAVH  218 (266)
Q Consensus       172 e~A~~~~erAL~-----ldP~da~---al~nla~ll~~~~gd~deAi~~~ekAL~  218 (266)
                      +.|...|++|+.     +.|.+|-   ...|+++++++..++.++|..+.++|+.
T Consensus       173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd  227 (261)
T 3ubw_A          173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD  227 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            678889988875     5688884   4557888999988999999998888765

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=83.67  E-value=16  Score=31.28  Aligned_cols=60  Identities=18%  Similarity=0.139  Sum_probs=45.5

Q ss_pred             HcCCHHHHHHHHHHHHH-----------------hCCCCHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 024536          167 IRGDFVKAEEYCGRAIL-----------------AKPGDGNVLSM-YGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVL  227 (266)
Q Consensus       167 ~~gd~e~A~~~~erAL~-----------------ldP~da~al~n-la~ll~~~~gd~deAi~~~ekAL~l~P~da~a~  227 (266)
                      ..+||.+|..+.+..|+                 .||.|-+.+++ +|.++ .+.|+.++|+.+|.+.....|-.+.+-
T Consensus        74 klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~ll-tq~g~r~EaI~y~~~Sf~~~~lf~~vE  151 (242)
T 3kae_A           74 KKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLC-TLSGYREEGIGHYVRSFGKSFLFSPVE  151 (242)
T ss_dssp             HTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHH-HHhcCHHHhhhHhhhhcCCccccchHH
Confidence            57899999999999882                 34667666554 56555 447999999999999999988766553

>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*

Probab=81.33  E-value=2  Score=38.51  Aligned_cols=47  Identities=26%  Similarity=0.512  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHH-----H--CCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024536          137 ESMDVYYQEMIK-----A--YPEDAL---VLANYAKFLKEIRGDFVKAEEYCGRAIL  183 (266)
Q Consensus       137 eeA~~~y~rALe-----l--~P~~~~---al~nlA~~L~~~~gd~e~A~~~~erAL~  183 (266)
                      ++|...|++|++     +  .|.+|.   +..|++.|+++..++.++|..+.++|+.
T Consensus       169 e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFd  225 (268)
T 3efz_A          169 KQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQ  225 (268)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            444555555543     2  345542   2344555555555555555555555544

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=80.60  E-value=0.99  Score=42.29  Aligned_cols=110  Identities=14%  Similarity=0.111  Sum_probs=67.8

Q ss_pred             CCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHH
Q 024536          134 KESESMDVYYQEMIKAY---PEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD---GNVLSMYGDLIWINHKDAP  207 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~---P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d---a~al~nla~ll~~~~gd~d  207 (266)
                      ...++-.+....+.+-+   ..-..++..+|.+++ ..||+++|.++|.++...-...   .+++.....+... .+|+.
T Consensus       108 ~~l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~-~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~-~~d~~  185 (429)
T 4b4t_R          108 SKIKELNEKIQKLEEDDEGELEQAQAWINLGEYYA-QIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFF-YNDQL  185 (429)
T ss_dssp             CCHHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHH-HHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHH-HTCHH
T ss_pred             HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH-hccHH
Confidence            34444444444444422   223457778888776 5789999999998888754332   2445555555544 57899


Q ss_pred             HHHHHHHHHHHhCC--CCHH----HHHHHHHHHHHcCCcccccc
Q 024536          208 RAKSYFDRAVHSAP--DDCH----VLASYARFLWDAGEEEDDDD  245 (266)
Q Consensus       208 eAi~~~ekAL~l~P--~da~----a~~~lA~ll~~~G~~~eA~~  245 (266)
                      .|..++++|..+..  .++.    .....|.+++..+++.+|.+
T Consensus       186 ~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~  229 (429)
T 4b4t_R          186 YVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAK  229 (429)
T ss_dssp             HHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHH
T ss_pred             HHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHH
Confidence            99999998866532  2222    34455666777777777764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	266
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	2e-06
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	2e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-04
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	0.004

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 45.4 bits (107), Expect = 2e-06
 Identities = 21/110 (19%), Positives = 42/110 (38%), Gaps = 2/110 (1%)

Query: 133 GKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVL 192
           G+  ++++    E IKA P+DA + +++ + L    GDF +A+E   ++I   P      
Sbjct: 10  GQLQQALE-LLIEAIKASPKDASLRSSFIELLCI-DGDFERADEQLMQSIKLFPEYLPGA 67

Query: 193 SMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEED 242
           S    L+         A+      V    ++             + + E 
Sbjct: 68  SQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQ 117

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 42.3 bits (99), Expect = 2e-05
 Identities = 18/99 (18%), Positives = 33/99 (33%), Gaps = 1/99 (1%)

Query: 168 RGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVL 227
            G   +A E    AI A P D ++ S + +L      D  RA     +++   P+     
Sbjct: 9   EGQLQQALELLIEAIKASPKDASLRSSFIEL-LCIDGDFERADEQLMQSIKLFPEYLPGA 67

Query: 228 ASYARFLWDAGEEEDDDDGDDQETCASQPNILPPLTAAY 266
           +     +  A   +D   G        +   L     ++
Sbjct: 68  SQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSF 106

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 4e-05
 Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 1/68 (1%)

Query: 168 RGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVL 227
            GDF  AE +C +    +P +  VL +    I    +   R+  +   A+   P      
Sbjct: 12  AGDFEAAERHCMQLWRQEPDNTGVLLLLS-SIHFQCRRLDRSAHFSTLAIKQNPLLAEAY 70

Query: 228 ASYARFLW 235
           ++      
Sbjct: 71  SNLGNVYK 78

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 5e-05
 Identities = 9/84 (10%), Positives = 24/84 (28%), Gaps = 1/84 (1%)

Query: 142 YYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI 201
           +  ++ +  P++  VL   +    +      ++  +   AI   P      S  G++   
Sbjct: 21  HCMQLWRQEPDNTGVLLLLSSIHFQ-CRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKE 79

Query: 202 NHKDAPRAKSYFDRAVHSAPDDCH 225
             +     + Y             
Sbjct: 80  RGQLQEAIEHYRHALRLKPDFIDG 103

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 6e-05
 Identities = 16/97 (16%), Positives = 32/97 (32%), Gaps = 2/97 (2%)

Query: 142 YYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI 201
            Y   ++  P  A  L N A   +E +G+  +A     +A+   P      S     +  
Sbjct: 293 CYNTALRLCPTHADSLNNLANIKRE-QGNIEEAVRLYRKALEVFPEFAAAHSNLAS-VLQ 350

Query: 202 NHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAG 238
                  A  ++  A+  +P      ++    L +  
Sbjct: 351 QQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 1e-04
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 8/63 (12%)

Query: 142 YYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD-------GNVLSM 194
            Y++ ++ +PE A   +N A  L++  G   +A  +   AI   P         GN L  
Sbjct: 327 LYRKALEVFPEFAAAHSNLASVLQQQ-GKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385

Query: 195 YGD 197
             D
Sbjct: 386 MQD 388

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (78), Expect = 0.004
 Identities = 9/85 (10%), Positives = 20/85 (23%), Gaps = 3/85 (3%)

Query: 142 YYQEMIKAYPEDALVLANY--AKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYG-DL 198
            +Q    A          Y           D  K        +     +     ++   +
Sbjct: 21  KFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80

Query: 199 IWINHKDAPRAKSYFDRAVHSAPDD 223
                K+  +A  Y    + + P +
Sbjct: 81  GNYRLKEYEKALKYVRGLLQTEPQN 105

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	266
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.71
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.68
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.63
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.62
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.62
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.62
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.62
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.6
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.58
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.56
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.55
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.54
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.53
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.53
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.51
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.5
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.5
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.49
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.49
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.45
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.45
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.43
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.42
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.41
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.36
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.3
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.27
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.26
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.12
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.11
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.11
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.1
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.07
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.07
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.03
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.02
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.0
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.99
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.98
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.97
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.96
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.95
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.88
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.84
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.82
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.81
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.79
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.68
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.65
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.56
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.53
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.46
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.31
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.1
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.98
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.97
d3efza1	223	14-3-3 protein cgd1_2980 {Cryptosporidium parvum [	88.74
d2o02a1	230	zeta isoform {Cow (Bos taurus) [TaxId: 9913]}	88.69
d2o02a1	230	zeta isoform {Cow (Bos taurus) [TaxId: 9913]}	88.65
d1o9da_	236	14-3-3-like protein C {Common tobacco (Nicotiana t	87.61
d1o9da_	236	14-3-3-like protein C {Common tobacco (Nicotiana t	86.53
d3efza1	223	14-3-3 protein cgd1_2980 {Cryptosporidium parvum [	80.99

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=9.4e-17  Score=124.24  Aligned_cols=99  Identities=17%  Similarity=0.198  Sum_probs=93.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+.+|+++|+++|+++.+|.++|.++. ..|++++|+.+|++|+.++|+++.+|+++|.++.. .|++++|+.+|
T Consensus        17 g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~-~~~~~~A~~~~   94 (117)
T d1elwa_          17 GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYA-KKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF-LNRFEEAKRTY   94 (117)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCcchhhhhccccccc-ccccccccchhhhhHHHhccchhhHHHHHHHHHHH-ccCHHHHHHHH
Confidence            68999999999999999999999999999886 58999999999999999999999999999998876 89999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHH
Q 024536          214 DRAVHSAPDDCHVLASYARFL  234 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll  234 (266)
                      ++|++++|+++.++..++.+.
T Consensus        95 ~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          95 EEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             HHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHh
Confidence            999999999999999988764

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=6.7e-16  Score=124.31  Aligned_cols=109  Identities=16%  Similarity=0.011  Sum_probs=98.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+.+|++||+++|+++.+|+++|.++. ..|++++|+.+|++||+++|++..+|.++|.++.. .|++++|+.+|
T Consensus        24 ~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~-~g~~~eA~~~~  101 (159)
T d1a17a_          24 KDYENAIKFYSQAIELNPSNAIYYGNRSLAYL-RTECYGYALGDATRAIELDKKYIKGYYRRAASNMA-LGKFRAALRDY  101 (159)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             CCHHHHHHHhhhccccchhhhhhhhhhHHHHH-hccccchHHHHHHHHHHHcccchHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            78999999999999999999999999999886 58999999999999999999999999999999876 89999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHH--cCCccccc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWD--AGEEEDDD  244 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~--~G~~~eA~  244 (266)
                      ++++.++|+++.++..++.+...  ...+++|+
T Consensus       102 ~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~  134 (159)
T d1a17a_         102 ETVVKVKPHDKDAKMKYQECNKIVKQKAFERAI  134 (159)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998888766443  34455555

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.63  E-value=4.2e-16  Score=125.44  Aligned_cols=111  Identities=20%  Similarity=0.173  Sum_probs=95.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKE---------IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN--  202 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~---------~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~--  202 (266)
                      +.+++|+..|++|++++|+++.+++++|.++..         ..+.+++|+.+|++||+++|+++.+|+++|.++...  
T Consensus        11 ~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~   90 (145)
T d1zu2a1          11 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF   90 (145)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHccc
Confidence            458999999999999999999999999988752         235678999999999999999999999999988652  


Q ss_pred             --------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536          203 --------HKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDD  244 (266)
Q Consensus       203 --------~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~  244 (266)
                              .+++++|+.+|++|++++|++..++..++......+.+.++.
T Consensus        91 ~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~~  140 (145)
T d1zu2a1          91 LTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEAY  140 (145)
T ss_dssp             HCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHHH
T ss_pred             chhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence                    134799999999999999999999999998776555555443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2.6e-16  Score=123.99  Aligned_cols=102  Identities=11%  Similarity=0.012  Sum_probs=89.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHcCCHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKE--IRGDFVKAEEYCGRAILAKPGD--GNVLSMYGDLIWINHKDAPRA  209 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~--~~gd~e~A~~~~erAL~ldP~d--a~al~nla~ll~~~~gd~deA  209 (266)
                      +++++|++.|++||+++|+++.+++|||.+|..  ..+++++|+.+|++++..+|.+  +.+|+++|.+++. .|++++|
T Consensus        13 ~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~-~g~~~~A   91 (122)
T d1nzna_          13 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR-LKEYEKA   91 (122)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH-TTCHHHH
T ss_pred             HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH-HhhhHHH
Confidence            578999999999999999999999999998852  1356778999999999999866  4589999999877 8999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024536          210 KSYFDRAVHSAPDDCHVLASYARFLWD  236 (266)
Q Consensus       210 i~~~ekAL~l~P~da~a~~~lA~ll~~  236 (266)
                      +.+|++||+++|++..++.....+.-.
T Consensus        92 ~~~~~~aL~~~P~~~~A~~l~~~I~~~  118 (122)
T d1nzna_          92 LKYVRGLLQTEPQNNQAKELERLIDKA  118 (122)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            999999999999999998877766544

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.2e-15  Score=136.41  Aligned_cols=112  Identities=13%  Similarity=0.105  Sum_probs=104.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +.+++|+++|++||+++|++..+|++.|.++....+++++|+.+|++||+++|++..+|.++|.++.. .|++++|+.+|
T Consensus        57 e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~-l~~~~eAl~~~  135 (315)
T d2h6fa1          57 ERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEW-LRDPSQELEFI  135 (315)
T ss_dssp             CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCCTTHHHHH
T ss_pred             CchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHh-hccHHHHHHHH
Confidence            46799999999999999999999999999886434579999999999999999999999999998876 79999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      ++|++++|++..+|.++|+++...+++++|++.
T Consensus       136 ~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~  168 (315)
T d2h6fa1         136 ADILNQDAKNYHAWQHRQWVIQEFKLWDNELQY  168 (315)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHH
T ss_pred             hhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHH
Confidence            999999999999999999999999999999853

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=3.8e-16  Score=127.23  Aligned_cols=90  Identities=17%  Similarity=0.070  Sum_probs=84.8

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+.+|++||+++|+++.+|+++|.++. ..|++++|+.+|++||.++|+++.+|+++|.++.. .|++++|+.+|
T Consensus        18 g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~-~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~-l~~~~~A~~~~   95 (201)
T d2c2la1          18 RKYPEAAACYGRAITRNPLVAVYYTNRALCYL-KMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE-MESYDEAIANL   95 (201)
T ss_dssp             TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHh-hhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence            69999999999999999999999999999886 68999999999999999999999999999999977 79999999999


Q ss_pred             HHHHHhCCCCHH
Q 024536          214 DRAVHSAPDDCH  225 (266)
Q Consensus       214 ekAL~l~P~da~  225 (266)
                      ++|+.++|++..
T Consensus        96 ~~al~l~p~~~~  107 (201)
T d2c2la1          96 QRAYSLAKEQRL  107 (201)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHhCcccHH
Confidence            999999986544

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=2.9e-15  Score=125.97  Aligned_cols=109  Identities=12%  Similarity=0.041  Sum_probs=96.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+.+|++||+++|+++.+|+++|.++. ..|++++|+.+|++|+.++|+++.++.++|.++.. .|++++|+.+|
T Consensus        51 g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~~~A~~~~  128 (259)
T d1xnfa_          51 GLRALARNDFSQALAIRPDMPEVFNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-GGRDKLAQDDL  128 (259)
T ss_dssp             TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHhhccCCCCHHHHhhhchHHH-HHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHH-HhhHHHHHHHH
Confidence            68899999999999999999999999998876 68999999999999999999999999999998876 79999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDD  244 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~  244 (266)
                      +++++++|++..+...++..+...+..+.+.
T Consensus       129 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~  159 (259)
T d1xnfa_         129 LAFYQDDPNDPFRSLWLYLAEQKLDEKQAKE  159 (259)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHhhccccHHHHHHHHHHHHHhhhHHHHH
Confidence            9999999999988887877777776544443

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.9e-15  Score=129.12  Aligned_cols=114  Identities=17%  Similarity=0.165  Sum_probs=105.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+.+|+++++++|+++.++.++|.++. ..+++++|+.+|++++...|.++.++..++.++.. .|++++|+.+|
T Consensus       251 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~  328 (388)
T d1w3ba_         251 GLIDLAIDTYRRAIELQPHFPDAYCNLANALK-EKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE-QGNIEEAVRLY  328 (388)
T ss_dssp             TCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHH-CCCHHHHHHHH
Confidence            68999999999999999999999999999876 57999999999999999999999999999988866 79999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCcccccccccc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDDQ  249 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~~  249 (266)
                      ++|++++|+++.++.++|.++...|++++|++.-+.
T Consensus       329 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  364 (388)
T d1w3ba_         329 RKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE  364 (388)
T ss_dssp             HHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            999999999999999999999999999999965443

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=6.8e-15  Score=126.80  Aligned_cols=104  Identities=14%  Similarity=0.173  Sum_probs=99.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+.+|++++...|.++.++..++.++. ..|++++|+.+|++||+++|+++.++.++|.++.. .|++++|+.+|
T Consensus       285 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~  362 (388)
T d1w3ba_         285 GSVAEAEDCYNTALRLCPTHADSLNNLANIKR-EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ-QGKLQEALMHY  362 (388)
T ss_dssp             SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHT-TTCCHHHHHHH
T ss_pred             CCHHHHHHHHHhhhccCCccchhhhHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            68899999999999999999999999999876 58999999999999999999999999999999876 89999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCC
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGE  239 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~  239 (266)
                      ++|++++|+++.++.++|.+|.++|+
T Consensus       363 ~~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         363 KEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999885

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=4e-15  Score=125.15  Aligned_cols=111  Identities=15%  Similarity=0.125  Sum_probs=100.6

Q ss_pred             CHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 024536          135 ESESMDVYYQEMIKAY----PEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAK  210 (266)
Q Consensus       135 ~~eeA~~~y~rALel~----P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi  210 (266)
                      +.+.|+..+.+++...    |..+.+++++|.++. ..|++++|+.+|++||.++|+++.+|+++|.++.. .|++++|+
T Consensus        14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~-~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~-~g~~~~A~   91 (259)
T d1xnfa_          14 QQEVILARMEQILASRALTDDERAQLLYERGVLYD-SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ-AGNFDAAY   91 (259)
T ss_dssp             HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHH-HHHHHHhh
Confidence            5678888899998754    445679999999876 68999999999999999999999999999998876 89999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccccccc
Q 024536          211 SYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGD  247 (266)
Q Consensus       211 ~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~  247 (266)
                      .+|++|++++|+++.++.++|.+++..|++++|++..
T Consensus        92 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~  128 (259)
T d1xnfa_          92 EAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDL  128 (259)
T ss_dssp             HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHH
Confidence            9999999999999999999999999999999999653

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=3.1e-14  Score=123.38  Aligned_cols=111  Identities=13%  Similarity=0.159  Sum_probs=103.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPED--ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKS  211 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~--~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~  211 (266)
                      +.+.+|+..|+++++++|++  +.++.++|.++. ..|++++|+.+|++++..+|+++.+|.++|.++.. .|++++|+.
T Consensus       150 ~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~  227 (323)
T d1fcha_         150 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN-LSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN-GNQSEEAVA  227 (323)
T ss_dssp             HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhhcccccccchhhHHHHH-HHHHHhhhhcccccccccccccccchhhhhhcccc-cccchhHHH
Confidence            46789999999999999984  678889998776 58999999999999999999999999999998876 899999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536          212 YFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       212 ~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      +|++|++++|+++.++.++|.++...|++++|++.
T Consensus       228 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~  262 (323)
T d1fcha_         228 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEH  262 (323)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHH
Confidence            99999999999999999999999999999999954

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=3.7e-14  Score=118.47  Aligned_cols=107  Identities=15%  Similarity=0.091  Sum_probs=97.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+..|.+   +.|.++.+|+|+|.++. ..|++++|+.+|++||+++|+++.+|+++|.++.+ .|++++|+..|
T Consensus        19 ~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~-~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~-~g~~~~A~~~~   93 (192)
T d1hh8a_          19 KDWKGALDAFSA---VQDPHSRICFNIGCMYT-ILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ-TEKYDLAIKDL   93 (192)
T ss_dssp             TCHHHHHHHHHT---SSSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHh---cCCCCHHHHHHHHHHHH-HcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHh-hccHHHHHHHH
Confidence            689999999986   46778999999999886 68999999999999999999999999999999877 89999999999


Q ss_pred             HHHHHhCCCC----------------HHHHHHHHHHHHHcCCcccccc
Q 024536          214 DRAVHSAPDD----------------CHVLASYARFLWDAGEEEDDDD  245 (266)
Q Consensus       214 ekAL~l~P~d----------------a~a~~~lA~ll~~~G~~~eA~~  245 (266)
                      ++|+...|.+                +.+++++|.++...+++++|++
T Consensus        94 ~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~  141 (192)
T d1hh8a_          94 KEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEE  141 (192)
T ss_dssp             HHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHH
Confidence            9999987654                4678999999999999999985

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=4.2e-14  Score=115.77  Aligned_cols=108  Identities=15%  Similarity=0.112  Sum_probs=96.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPED---------------ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDL  198 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~---------------~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~l  198 (266)
                      +++++|+.+|++||++.|..               ..++.|+|.++. ..+++++|+.++++||.++|+++.+++++|.+
T Consensus        27 ~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~-k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~  105 (170)
T d1p5qa1          27 GKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL-KLQAFSAAIESCNKALELDSNNEKGLSRRGEA  105 (170)
T ss_dssp             TCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHH-hhhhcccccchhhhhhhccccchhhhHHHHHH
Confidence            68999999999999998865               256778898776 58999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccc
Q 024536          199 IWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDD  243 (266)
Q Consensus       199 l~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA  243 (266)
                      +.. .|++++|+.+|++|+.++|+++.+...++.+.....+..+.
T Consensus       106 ~~~-~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~  149 (170)
T d1p5qa1         106 HLA-VNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR  149 (170)
T ss_dssp             HHH-TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHH-hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            877 89999999999999999999999999999887776655444

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=5.4e-14  Score=121.78  Aligned_cols=109  Identities=15%  Similarity=0.035  Sum_probs=97.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+.+|++++..+|+++.+|.++|.++. ..|++++|+.+|++|++++|+++.+|+++|.++.. .|++++|+.+|
T Consensus       186 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~~~A~~~~  263 (323)
T d1fcha_         186 GEYDKAVDCFTAALSVRPNDYLLWNKLGATLA-NGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN-LGAHREAVEHF  263 (323)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHH
T ss_pred             HHHhhhhcccccccccccccccchhhhhhccc-ccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence            68999999999999999999999999999886 68999999999999999999999999999999877 79999999999


Q ss_pred             HHHHHhCCCCHHH-----------HHHHHHHHHHcCCccccc
Q 024536          214 DRAVHSAPDDCHV-----------LASYARFLWDAGEEEDDD  244 (266)
Q Consensus       214 ekAL~l~P~da~a-----------~~~lA~ll~~~G~~~eA~  244 (266)
                      ++||+++|++..+           +..++.++...++.+.+.
T Consensus       264 ~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~  305 (323)
T d1fcha_         264 LEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG  305 (323)
T ss_dssp             HHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred             HHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            9999999998764           466788888888876654

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.51  E-value=3.1e-14  Score=115.59  Aligned_cols=108  Identities=17%  Similarity=0.135  Sum_probs=96.2

Q ss_pred             CCHHHHHHHHHHHHHH----------------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKA----------------YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGD  197 (266)
Q Consensus       134 ~~~eeA~~~y~rALel----------------~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~  197 (266)
                      +++++|+..|++||++                +|.+..++.|+|.++. ..+++++|+.+|.+||+++|+++.+|+++|.
T Consensus        41 ~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~  119 (169)
T d1ihga1          41 QNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKL-KMSDWQGAVDSCLEALEIDPSNTKALYRRAQ  119 (169)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHH-hhcccchhhhhhhhhhhhhhhhhhHHHhHHH
Confidence            6899999999999864                5677788999998876 5899999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccc
Q 024536          198 LIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDD  243 (266)
Q Consensus       198 ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA  243 (266)
                      ++.. .+++++|+..|++|++++|++..+...+..+........++
T Consensus       120 ~~~~-l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~  164 (169)
T d1ihga1         120 GWQG-LKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK  164 (169)
T ss_dssp             HHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9977 79999999999999999999999999999887766544443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=6.8e-14  Score=124.83  Aligned_cols=107  Identities=12%  Similarity=0.055  Sum_probs=100.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+.+|+++++++|++..+|+++|.++. ..|++++|+.+|++||+++|.+..+|.++|.++.. .+++++|+.+|
T Consensus        92 ~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~-~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~-~~~~~~Al~~~  169 (315)
T d2h6fa1          92 KDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE-WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE-FKLWDNELQYV  169 (315)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCCTTHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH-hhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHH-HHhhHHHHHHH
Confidence            46899999999999999999999999999876 58999999999999999999999999999999876 78999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCccc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEED  242 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~e  242 (266)
                      ++||+++|.+..+|++++.++...++..+
T Consensus       170 ~~al~~~p~n~~a~~~r~~~l~~~~~~~~  198 (315)
T d2h6fa1         170 DQLLKEDVRNNSVWNQRYFVISNTTGYND  198 (315)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred             HHHHHHCCccHHHHHHHHHHHHHccccch
Confidence            99999999999999999999999888654

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.50  E-value=8.8e-14  Score=106.51  Aligned_cols=87  Identities=11%  Similarity=-0.049  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024536          157 LANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWD  236 (266)
Q Consensus       157 l~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~  236 (266)
                      ++++|..+. ..|++++|+.+|++||.++|+++.+|.++|.++.. .+++++|+.+|++|++++|+++.++..+|.++..
T Consensus        19 ~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~   96 (112)
T d1hxia_          19 PMEEGLSML-KLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAE-NEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   96 (112)
T ss_dssp             HHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-HHhhhHHHHHHHhhhcccccccchhhhhhhhhhhh-hhhHHHhhcccccccccccccccchHHHHHHHHH
Confidence            345555544 45666666666666666666666666666666544 5666666666666666666666666666666666


Q ss_pred             cCCcccccc
Q 024536          237 AGEEEDDDD  245 (266)
Q Consensus       237 ~G~~~eA~~  245 (266)
                      +|+.++|++
T Consensus        97 ~g~~~~A~~  105 (112)
T d1hxia_          97 EHNANAALA  105 (112)
T ss_dssp             HHHHHHHHH
T ss_pred             CCCHHHHHH
Confidence            666666654

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=7.7e-14  Score=113.26  Aligned_cols=92  Identities=13%  Similarity=0.042  Sum_probs=85.2

Q ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 024536          153 DALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYAR  232 (266)
Q Consensus       153 ~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~  232 (266)
                      ++..+.+.|..++ ..|+|++|+.+|++||.++|+++.+|.++|.++.. .|++++|+.+|++||.++|+++.+|.++|.
T Consensus         3 ~a~~l~~~Gn~~~-~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~-~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~   80 (201)
T d2c2la1           3 SAQELKEQGNRLF-VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (201)
T ss_dssp             CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhh-hhhhhhhhHHHHHHHHhCCCcHHHHHHHHH
Confidence            3556778888887 58999999999999999999999999999999876 899999999999999999999999999999


Q ss_pred             HHHHcCCccccccc
Q 024536          233 FLWDAGEEEDDDDG  246 (266)
Q Consensus       233 ll~~~G~~~eA~~~  246 (266)
                      ++..+|++++|++.
T Consensus        81 ~~~~l~~~~~A~~~   94 (201)
T d2c2la1          81 CQLEMESYDEAIAN   94 (201)
T ss_dssp             HHHHTTCHHHHHHH
T ss_pred             HHHHCCCHHHHHHH
Confidence            99999999999853

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.49  E-value=1.9e-13  Score=109.94  Aligned_cols=102  Identities=17%  Similarity=0.142  Sum_probs=91.8

Q ss_pred             CCHHHHHHHHHHHHHHCCCCH----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDA----------------LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGD  197 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~----------------~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~  197 (266)
                      +++.+|+..|++||...|...                .++.|+|.++. ..+++++|+.+|++||+++|++..+|+++|.
T Consensus        31 ~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~-~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~  109 (153)
T d2fbna1          31 NEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYN-KNKDYPKAIDHASKVLKIDKNNVKALYKLGV  109 (153)
T ss_dssp             TCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHH-HhcccchhhhhhhccccccchhhhhhHHhHH
Confidence            689999999999999876543                36788998876 6899999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 024536          198 LIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDA  237 (266)
Q Consensus       198 ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~  237 (266)
                      ++.. .|++++|+.+|++|++++|+++.+...+..+....
T Consensus       110 ~~~~-lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl  148 (153)
T d2fbna1         110 ANMY-FGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL  148 (153)
T ss_dssp             HHHH-HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            9987 79999999999999999999999999998876554

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.45  E-value=1.7e-13  Score=104.86  Aligned_cols=82  Identities=11%  Similarity=-0.050  Sum_probs=78.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+.+|+++++++|+++.+|.++|.++. ..+++++|+.+|++||+++|+++.+|.++|.++.. .|++++|++++
T Consensus        30 g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~-~g~~~~A~~~l  107 (112)
T d1hxia_          30 ANLAEAALAFEAVCQKEPEREEAWRSLGLTQA-ENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN-EHNANAALASL  107 (112)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred             hhhHHHHHHHhhhcccccccchhhhhhhhhhh-hhhhHHHhhcccccccccccccccchHHHHHHHHH-CCCHHHHHHHH
Confidence            78999999999999999999999999999875 68999999999999999999999999999998876 79999999999


Q ss_pred             HHHH
Q 024536          214 DRAV  217 (266)
Q Consensus       214 ekAL  217 (266)
                      +|+|
T Consensus       108 ~~~l  111 (112)
T d1hxia_         108 RAWL  111 (112)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            9986

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.6e-13  Score=104.48  Aligned_cols=91  Identities=16%  Similarity=0.000  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024536          157 LANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWD  236 (266)
Q Consensus       157 l~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~  236 (266)
                      +.+-|..+. ..|++++|+.+|++||.++|+++.+|.++|.++.. .+++++|+.+|++|+.++|+++.++.++|.++..
T Consensus         6 l~~~g~~~~-~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~   83 (117)
T d1elwa_           6 LKEKGNKAL-SVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAK-KGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF   83 (117)
T ss_dssp             HHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHHhcCCcchhhhhcccccccc-cccccccchhhhhHHHhccchhhHHHHHHHHHHH
Confidence            445566665 58999999999999999999999999999999877 7999999999999999999999999999999999


Q ss_pred             cCCcccccccccc
Q 024536          237 AGEEEDDDDGDDQ  249 (266)
Q Consensus       237 ~G~~~eA~~~~~~  249 (266)
                      .|++++|++.-+.
T Consensus        84 ~~~~~~A~~~~~~   96 (117)
T d1elwa_          84 LNRFEEAKRTYEE   96 (117)
T ss_dssp             TTCHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHH
Confidence            9999999965433

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=3.4e-13  Score=108.07  Aligned_cols=88  Identities=13%  Similarity=-0.065  Sum_probs=80.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 024536          159 NYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAG  238 (266)
Q Consensus       159 nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G  238 (266)
                      ..|..++ ..|+|++|+.+|++||.++|+++.+|.++|.++.. .|++++|+.+|++||+++|+++.++..+|.++..+|
T Consensus        15 ~~gn~~~-~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g   92 (159)
T d1a17a_          15 TQANDYF-KAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR-TECYGYALGDATRAIELDKKYIKGYYRRAASNMALG   92 (159)
T ss_dssp             HHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHH-HcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHh-ccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence            3455555 58999999999999999999999999999999877 799999999999999999999999999999999999


Q ss_pred             Cccccccccc
Q 024536          239 EEEDDDDGDD  248 (266)
Q Consensus       239 ~~~eA~~~~~  248 (266)
                      ++++|++.-+
T Consensus        93 ~~~eA~~~~~  102 (159)
T d1a17a_          93 KFRAALRDYE  102 (159)
T ss_dssp             CHHHHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            9999996433

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.42  E-value=7.3e-13  Score=107.73  Aligned_cols=107  Identities=15%  Similarity=0.170  Sum_probs=94.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPED---------------ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDL  198 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~---------------~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~l  198 (266)
                      +++.+|+.+|++||...|..               ..++.|+|.++. ..+++++|+.+|++||.++|++..+++++|.+
T Consensus        29 ~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~-~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~  107 (168)
T d1kt1a1          29 GKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL-KLREYTKAVECCDKALGLDSANEKGLYRRGEA  107 (168)
T ss_dssp             TCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHH-HhhhcccchhhhhhhhhcccchHHHHHHHHHH
Confidence            68999999999999875543               356778998876 58999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccc
Q 024536          199 IWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEED  242 (266)
Q Consensus       199 l~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~e  242 (266)
                      +.. .|++++|+.+|++|+.++|+++.++..++.+.....+..+
T Consensus       108 ~~~-l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e  150 (168)
T d1kt1a1         108 QLL-MNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNE  150 (168)
T ss_dssp             HHH-TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHH
Confidence            876 8999999999999999999999999999988776655443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.7e-12  Score=101.19  Aligned_cols=95  Identities=17%  Similarity=0.272  Sum_probs=80.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHHcCCH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGN-------VLSMYGDLIWINHKDA  206 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~-------al~nla~ll~~~~gd~  206 (266)
                      ++|++|+.+|+++|+++|+++.++.|+|.++. ..|++++|+.+|++||.++|.++.       ++..+|.++.. .+++
T Consensus        18 ~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~~-~~~~   95 (128)
T d1elra_          18 KDFDTALKHYDKAKELDPTNMTYITNQAAVYF-EKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFK-EEKY   95 (128)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH-TTCH
T ss_pred             CCHHHHHHHHHHHHHhCcccHHHHHhHHHHHH-HcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHH-hCCH
Confidence            68999999999999999999999999999887 589999999999999999998865       45555655554 7899


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHH
Q 024536          207 PRAKSYFDRAVHSAPDDCHVLASYA  231 (266)
Q Consensus       207 deAi~~~ekAL~l~P~da~a~~~lA  231 (266)
                      ++|+.+|++++..+|+ +.++..+.
T Consensus        96 ~~A~~~~~kal~~~~~-~~~~~~l~  119 (128)
T d1elra_          96 KDAIHFYNKSLAEHRT-PDVLKKCQ  119 (128)
T ss_dssp             HHHHHHHHHHHHHCCC-HHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCC-HHHHHHHH
Confidence            9999999999999885 45544443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.1e-11  Score=103.10  Aligned_cols=108  Identities=11%  Similarity=-0.020  Sum_probs=90.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------------HHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD----------------GNVLSMYGD  197 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d----------------a~al~nla~  197 (266)
                      +++++|+.+|++||+++|+++.+|+++|.++. .+|++++|+..|++||...|.+                .++++++|.
T Consensus        50 g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~-~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~  128 (192)
T d1hh8a_          50 KNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY-QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAF  128 (192)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHH
T ss_pred             CCchhHHHHHHHHHHHhhhhhhhHHHHHHHHH-hhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHH
Confidence            78999999999999999999999999999886 6899999999999999986654                478899998


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcccc
Q 024536          198 LIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDD  243 (266)
Q Consensus       198 ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA  243 (266)
                      ++.. .+++++|+..|++|+.+.|+........|.-....+...+.
T Consensus       129 ~~~~-~~~~~~A~~~l~~A~~~~~~~~~~~~~~Al~~~~~~~~~~~  173 (192)
T d1hh8a_         129 MYAK-KEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYEP  173 (192)
T ss_dssp             HHHH-TTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHHHTTCCCCC
T ss_pred             HHHH-CCCHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhhhCCc
Confidence            8866 89999999999999999998655555555444444444443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1e-11  Score=92.45  Aligned_cols=82  Identities=13%  Similarity=0.113  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 024536          154 ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD-------GNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHV  226 (266)
Q Consensus       154 ~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d-------a~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a  226 (266)
                      ++-.+++|.+++ ..|+|++|+.+|++|+++.|.+       +.++.++|.+++. .|++++|+.+|++||+++|+++.+
T Consensus         5 addc~~lG~~~~-~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~-~g~~~~A~~~y~~aL~l~P~~~~a   82 (95)
T d1tjca_           5 AEDSFELGKVAY-TEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ-QGDLDKALLLTKKLLELDPEHQRA   82 (95)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHh-cCChHHHHHHHHHHHHhCcCCHHH
Confidence            456788998887 5899999999999999987654       6889999999877 899999999999999999999999


Q ss_pred             HHHHHHHHHHc
Q 024536          227 LASYARFLWDA  237 (266)
Q Consensus       227 ~~~lA~ll~~~  237 (266)
                      +.+++.+...+
T Consensus        83 ~~Nl~~~~~~l   93 (95)
T d1tjca_          83 NGNLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99998776543

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.27  E-value=1.8e-11  Score=107.61  Aligned_cols=114  Identities=8%  Similarity=0.049  Sum_probs=99.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEI-RGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY  212 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~-~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~  212 (266)
                      +++++|+.+|+++++.+|+++.+|+++|.++... .+++++|..++++++.++|.+..++......++...+++++|+.+
T Consensus        87 ~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~  166 (334)
T d1dcea1          87 ALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAF  166 (334)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHH
Confidence            4678999999999999999999999999877521 246899999999999999999998765443444558999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCcccccccc
Q 024536          213 FDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGD  247 (266)
Q Consensus       213 ~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~  247 (266)
                      +++++.++|++..++.++|.++...|++++|+...
T Consensus       167 ~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~  201 (334)
T d1dcea1         167 TDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG  201 (334)
T ss_dssp             HHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            99999999999999999999999999999998543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1e-11  Score=96.71  Aligned_cols=91  Identities=12%  Similarity=0.101  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------H
Q 024536          154 ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCH-------V  226 (266)
Q Consensus       154 ~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~-------a  226 (266)
                      +..+-++|..++ ..++|++|+.+|.+||.++|+++.++.++|.++.. .|++++|+.+|++||.++|++..       +
T Consensus         4 a~~~k~~G~~~~-~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~   81 (128)
T d1elra_           4 ALKEKELGNDAY-KKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE-KGDYNKCRELCEKAIEVGRENREDYRQIAKA   81 (128)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHH-cCchHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            445678898887 58999999999999999999999999999999977 79999999999999999998764       5


Q ss_pred             HHHHHHHHHHcCCccccccc
Q 024536          227 LASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       227 ~~~lA~ll~~~G~~~eA~~~  246 (266)
                      +..+|.++...+++++|++.
T Consensus        82 ~~~lg~~~~~~~~~~~A~~~  101 (128)
T d1elra_          82 YARIGNSYFKEEKYKDAIHF  101 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHH
Confidence            56677777888888888854

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=9.3e-12  Score=97.37  Aligned_cols=89  Identities=11%  Similarity=-0.046  Sum_probs=74.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Q 024536          159 NYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN--HKDAPRAKSYFDRAVHSAPDD--CHVLASYARFL  234 (266)
Q Consensus       159 nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~--~gd~deAi~~~ekAL~l~P~d--a~a~~~lA~ll  234 (266)
                      +++..+. ..+++++|++.|++||.++|+++.++++||+++...  .+++++|+.+|++++..+|++  +.+++++|.++
T Consensus         4 ~l~n~~~-~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           4 AVLNELV-SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhc-CHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            3444444 468899999999999999999999999999988641  246778999999999999866  45899999999


Q ss_pred             HHcCCccccccccc
Q 024536          235 WDAGEEEDDDDGDD  248 (266)
Q Consensus       235 ~~~G~~~eA~~~~~  248 (266)
                      ...|++++|++.-+
T Consensus        83 ~~~g~~~~A~~~~~   96 (122)
T d1nzna_          83 YRLKEYEKALKYVR   96 (122)
T ss_dssp             HHTTCHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHH
Confidence            99999999996533

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1.4e-10  Score=94.34  Aligned_cols=93  Identities=6%  Similarity=-0.076  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024536          154 ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG---------------NVLSMYGDLIWINHKDAPRAKSYFDRAVH  218 (266)
Q Consensus       154 ~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da---------------~al~nla~ll~~~~gd~deAi~~~ekAL~  218 (266)
                      +..+.+.|..++ ..+++++|+.+|++||...|.+.               .++.++|.++.. .+++++|+.++++||.
T Consensus        13 a~~l~~~G~~~~-~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k-~~~~~~A~~~~~~al~   90 (170)
T d1p5qa1          13 STIVKERGTVYF-KEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLK-LQAFSAAIESCNKALE   90 (170)
T ss_dssp             HHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHh-hhhcccccchhhhhhh
Confidence            455667788776 57999999999999999988652               567789988877 8999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCccccccccc
Q 024536          219 SAPDDCHVLASYARFLWDAGEEEDDDDGDD  248 (266)
Q Consensus       219 l~P~da~a~~~lA~ll~~~G~~~eA~~~~~  248 (266)
                      ++|+++.++..+|.++..+|++++|++.-+
T Consensus        91 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~  120 (170)
T d1p5qa1          91 LDSNNEKGLSRRGEAHLAVNDFELARADFQ  120 (170)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ccccchhhhHHHHHHHHHhhhHHHHHHHHH
Confidence            999999999999999999999999996543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=9.1e-11  Score=110.51  Aligned_cols=107  Identities=15%  Similarity=0.092  Sum_probs=88.8

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+..|++++..+|.  .++.++|.++. .++++++|+.+|++|+.++|+++.+|+++|.++.. .|++.+|+.+|
T Consensus       134 ~~~~~A~~~~~~al~~~~~--~~~~~LG~l~~-~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~-~~~~~~A~~~y  209 (497)
T d1ya0a1         134 THTSAIVKPQSSSCSYICQ--HCLVHLGDIAR-YRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS-KGDHLTTIFYY  209 (497)
T ss_dssp             ---------CCHHHHHHHH--HHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhCCCHH--HHHHHHHHHHH-HcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            6789999999999998874  57889999876 68999999999999999999999999999998866 89999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCccccc
Q 024536          214 DRAVHSAPDDCHVLASYARFLWDAGEEEDDD  244 (266)
Q Consensus       214 ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~  244 (266)
                      .||+.++|..+.++.+++.++....+..++.
T Consensus       210 ~ral~~~~~~~~a~~nL~~~~~~~~~~~~~~  240 (497)
T d1ya0a1         210 CRSIAVKFPFPAASTNLQKALSKALESRDEV  240 (497)
T ss_dssp             HHHHSSSBCCHHHHHHHHHHHHHHTTSCCCC
T ss_pred             HHHHhCCCCCHHHHHHHHHHHHHhhhhhhhh
Confidence            9999999999999999999998877665555

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.10  E-value=1.1e-10  Score=93.35  Aligned_cols=88  Identities=13%  Similarity=-0.031  Sum_probs=76.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCC------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------CHH
Q 024536          134 KESESMDVYYQEMIKAYPED------------ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPG-----------DGN  190 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~------------~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~-----------da~  190 (266)
                      ++|++|+..|++||+++|+.            +.+|.|+|.++. ..|++++|...|++||.+.|.           ...
T Consensus        23 g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~-~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  101 (156)
T d2hr2a1          23 GEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA-GLRSFDEALHSADKALHYFNRRGELNQDEGKLWIS  101 (156)
T ss_dssp             TCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHH-HcCccchhhHhhhhhhhcccccccccccccchhHH
Confidence            68999999999999999875            368899999886 589999999999999987542           245


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 024536          191 VLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD  223 (266)
Q Consensus       191 al~nla~ll~~~~gd~deAi~~~ekAL~l~P~d  223 (266)
                      +++++|.++.. .|++++|+.+|++|+++.|..
T Consensus       102 a~~~~g~~~~~-lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1         102 AVYSRALALDG-LGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             HHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHC
T ss_pred             HHhhhHHHHHH-HHHHHHHHHHHHHHHHhhHHh
Confidence            78899998876 899999999999999997754

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.07  E-value=7.6e-11  Score=94.03  Aligned_cols=74  Identities=12%  Similarity=0.055  Sum_probs=65.8

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 024536          167 IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN---------HKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDA  237 (266)
Q Consensus       167 ~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~---------~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~  237 (266)
                      ..+.+++|+.+|++||+++|+++.+++++|.++...         .+++++|+.+|++||+++|+++.++.++|.+|..+
T Consensus         9 r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~   88 (145)
T d1zu2a1           9 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF   88 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHc
Confidence            346689999999999999999999999999988632         35578999999999999999999999999999887


Q ss_pred             CCc
Q 024536          238 GEE  240 (266)
Q Consensus       238 G~~  240 (266)
                      |+.
T Consensus        89 g~~   91 (145)
T d1zu2a1          89 AFL   91 (145)
T ss_dssp             HHH
T ss_pred             ccc
Confidence            753

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.07  E-value=9.5e-10  Score=96.28  Aligned_cols=112  Identities=11%  Similarity=-0.009  Sum_probs=94.9

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-cC
Q 024536          135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEI---------RGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN-HK  204 (266)
Q Consensus       135 ~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~---------~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~-~g  204 (266)
                      ..++|+++|+++|+++|+++.+|++.+.++...         .+++++|+.+|++++..+|.++.+|.++|.++... ++
T Consensus        44 ~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~  123 (334)
T d1dcea1          44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP  123 (334)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred             ccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccc
Confidence            448999999999999999999998888765422         23478999999999999999999999999877552 23


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHcCCccccccc
Q 024536          205 DAPRAKSYFDRAVHSAPDDCHVLA-SYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       205 d~deAi~~~ekAL~l~P~da~a~~-~lA~ll~~~G~~~eA~~~  246 (266)
                      ++++|+.++++++.++|.+..++. ..+.++...+++++|++.
T Consensus       124 ~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~  166 (334)
T d1dcea1         124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAF  166 (334)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHH
Confidence            589999999999999999998865 566788888999988854

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.03  E-value=8.3e-11  Score=94.88  Aligned_cols=90  Identities=13%  Similarity=-0.006  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 024536          157 LANYAKFLKEIRGDFVKAEEYCGRAIL----------------AKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSA  220 (266)
Q Consensus       157 l~nlA~~L~~~~gd~e~A~~~~erAL~----------------ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~  220 (266)
                      +...|..++ ..+++++|+.+|.+||.                ++|.+..++.++|.++.. .+++++|+.+|++||+++
T Consensus        30 ~~~~~~~~~-~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~~~~~~Ai~~~~~al~~~  107 (169)
T d1ihga1          30 LKNIGNTFF-KSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK-MSDWQGAVDSCLEALEID  107 (169)
T ss_dssp             HHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHh-hcccchhhhhhhhhhhhh
Confidence            345566555 57999999999999986                367788889999998876 799999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCccccccccc
Q 024536          221 PDDCHVLASYARFLWDAGEEEDDDDGDD  248 (266)
Q Consensus       221 P~da~a~~~lA~ll~~~G~~~eA~~~~~  248 (266)
                      |+++.++..+|.++..+|++++|++...
T Consensus       108 p~~~~a~~~~g~~~~~l~~~~~A~~~~~  135 (169)
T d1ihga1         108 PSNTKALYRRAQGWQGLKEYDQALADLK  135 (169)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hhhhhHHHhHHHHHHHccCHHHHHHHHH
Confidence            9999999999999999999999986433

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.02  E-value=4e-10  Score=98.48  Aligned_cols=115  Identities=16%  Similarity=0.147  Sum_probs=92.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDA-LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSY  212 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~-~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~  212 (266)
                      +++++|...|+++|+..|.+. .+|..|+.++. ..+++++|..+|++|+...|.+...+..++.+.+...++.+.|..+
T Consensus       113 ~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~-~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i  191 (308)
T d2onda1         113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR-RAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI  191 (308)
T ss_dssp             TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHH-HHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHH
Confidence            567888888888888888765 47788887765 4677888888888888888888888888887665556788888888


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCcccccccccc
Q 024536          213 FDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDDQ  249 (266)
Q Consensus       213 ~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~~  249 (266)
                      |++++...|+++.++..++.++...|+.+.|..+.+.
T Consensus       192 ~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~  228 (308)
T d2onda1         192 FELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFER  228 (308)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            8888888888888888888888888888888755443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=6.6e-11  Score=111.49  Aligned_cols=111  Identities=9%  Similarity=-0.025  Sum_probs=70.1

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 024536          135 ESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFD  214 (266)
Q Consensus       135 ~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~e  214 (266)
                      .|+.|+..|++++.++|++..++.++|..+. ..+++++|...+++++..+|.  .++.++|.++.. ++++++|+.+|+
T Consensus       101 ~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~~~--~~~~~LG~l~~~-~~~~~~A~~~y~  176 (497)
T d1ya0a1         101 FYTQLLQELCTVFNVDLPCRVKSSQLGIISN-KQTHTSAIVKPQSSSCSYICQ--HCLVHLGDIARY-RNQTSQAESYYR  176 (497)
T ss_dssp             HHHHHHHHHTC--------------------------------CCHHHHHHHH--HHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCChhhHHHHHHhHHHHH-hCCCHHHHHHHHHHHhCCCHH--HHHHHHHHHHHH-cccHHHHHHHHH
Confidence            4677777777788899999999999998775 579999999999999998874  678889998765 899999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCcccccccccc
Q 024536          215 RAVHSAPDDCHVLASYARFLWDAGEEEDDDDGDDQ  249 (266)
Q Consensus       215 kAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~~~  249 (266)
                      +|+.++|+++.+++++|.++...|+..+|+.+-.+
T Consensus       177 ~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~r  211 (497)
T d1ya0a1         177 HAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCR  211 (497)
T ss_dssp             HHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            99999999999999999999999999999965433

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.99  E-value=8.8e-10  Score=87.94  Aligned_cols=97  Identities=9%  Similarity=-0.042  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 024536          157 LANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG----------------NVLSMYGDLIWINHKDAPRAKSYFDRAVHSA  220 (266)
Q Consensus       157 l~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da----------------~al~nla~ll~~~~gd~deAi~~~ekAL~l~  220 (266)
                      +..-|..++ ..|+|.+|+.+|++||.+-|...                .++.|+|.+++. .+++++|+.+|++||+++
T Consensus        20 ~~~~G~~~f-~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~-l~~~~~Al~~~~~al~~~   97 (153)
T d2fbna1          20 IKEEGNEFF-KKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNK-NKDYPKAIDHASKVLKID   97 (153)
T ss_dssp             HHHHHHHHH-HTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHH-hcccchhhhhhhcccccc
Confidence            444555565 47999999999999998766433                367889998877 799999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCcccccccccccccCCC
Q 024536          221 PDDCHVLASYARFLWDAGEEEDDDDGDDQETCASQ  255 (266)
Q Consensus       221 P~da~a~~~lA~ll~~~G~~~eA~~~~~~~~~~~~  255 (266)
                      |++..+++.+|.++..+|++++|++..+...++.|
T Consensus        98 p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P  132 (153)
T d2fbna1          98 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP  132 (153)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred             chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999965444333333

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.98  E-value=4.9e-10  Score=97.93  Aligned_cols=122  Identities=11%  Similarity=0.020  Sum_probs=105.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|.++|++|++..|.+...+..+|.+.+...++.+.|..+|++++...|+++..|..|+.++.. .|++++|..+|
T Consensus       148 ~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~-~g~~~~aR~~f  226 (308)
T d2onda1         148 EGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH-LNEDNNTRVLF  226 (308)
T ss_dssp             HCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TCCHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-cCChHHHHHHH
Confidence            46799999999999999999999999998765456899999999999999999999999999998876 89999999999


Q ss_pred             HHHHHhCCCCH----HHHHHHHHHHHHcCCcccccccccccccCCCC
Q 024536          214 DRAVHSAPDDC----HVLASYARFLWDAGEEEDDDDGDDQETCASQP  256 (266)
Q Consensus       214 ekAL~l~P~da----~a~~~lA~ll~~~G~~~eA~~~~~~~~~~~~~  256 (266)
                      ++|+...|.++    .+|..+..+-...|+.+.+.++.++..+.+|.
T Consensus       227 e~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~  273 (308)
T d2onda1         227 ERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE  273 (308)
T ss_dssp             HHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcc
Confidence            99999887554    47888999888889988888665555444443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.97  E-value=1.1e-10  Score=102.61  Aligned_cols=110  Identities=18%  Similarity=0.090  Sum_probs=91.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|++.|+++|+.+|+|+.++.+|+.+|. ..|++++|.+.|+++++++|++..++.+|+.++.. .+..+++...+
T Consensus        10 G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~-~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a-~~~~~~a~~~~   87 (264)
T d1zbpa1          10 GQLQQALELLIEAIKASPKDASLRSSFIELLC-IDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA-AQARKDFAQGA   87 (264)
T ss_dssp             TCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-HHHHHHHTTSC
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh-ccccHHHHHHh
Confidence            68999999999999999999999999999887 68999999999999999999999999999987754 45566666555


Q ss_pred             HHHHHh-CCCCHHHHHHHHHHHHHcCCcccccc
Q 024536          214 DRAVHS-APDDCHVLASYARFLWDAGEEEDDDD  245 (266)
Q Consensus       214 ekAL~l-~P~da~a~~~lA~ll~~~G~~~eA~~  245 (266)
                      .+++.+ +|++...+...+.++...|+.++|++
T Consensus        88 ~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~  120 (264)
T d1zbpa1          88 ATAKVLGENEELTKSLVSFNLSMVSQDYEQVSE  120 (264)
T ss_dssp             CCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             hhhhcccCchHHHHHHHHHHHHHhCCCHHHHHH
Confidence            554333 45555666777888888899888875

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1.7e-09  Score=80.04  Aligned_cols=65  Identities=12%  Similarity=0.119  Sum_probs=59.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPED-------ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLI  199 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~-------~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll  199 (266)
                      +++.+|+.+|++|+++.|.+       +.++.|+|.+++ ..|++++|+.+|++||+++|+++.++.|++.+.
T Consensus        19 g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~-~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~~   90 (95)
T d1tjca_          19 ADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVY-QQGDLDKALLLTKKLLELDPEHQRANGNLKYFE   90 (95)
T ss_dssp             TCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHH-hcCChHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence            68999999999999997765       689999999887 589999999999999999999999999998644

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.95  E-value=3.8e-10  Score=97.98  Aligned_cols=113  Identities=17%  Similarity=0.068  Sum_probs=94.2

Q ss_pred             CCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAY------PEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD------GNVLSMYGDLIWI  201 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~------P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d------a~al~nla~ll~~  201 (266)
                      +++++|+.+|.+|+++.      +.-+.+|.++|.++. ..+++++|+.+|++|+.+.+..      ..++.++|.++..
T Consensus        51 ~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~  129 (290)
T d1qqea_          51 KELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFK-SGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEN  129 (290)
T ss_dssp             TCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-HhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhh
Confidence            67899999999999984      333578899999876 5899999999999999987666      5678888877755


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCcccccccc
Q 024536          202 NHKDAPRAKSYFDRAVHSAPDD------CHVLASYARFLWDAGEEEDDDDGD  247 (266)
Q Consensus       202 ~~gd~deAi~~~ekAL~l~P~d------a~a~~~lA~ll~~~G~~~eA~~~~  247 (266)
                      ..+++++|+.+|++|+++.+.+      ..++.++|.++...|++++|++..
T Consensus       130 ~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~  181 (290)
T d1qqea_         130 DLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIY  181 (290)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHH
Confidence            4599999999999999885432      346889999999999999999653

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.88  E-value=5.9e-09  Score=83.97  Aligned_cols=83  Identities=7%  Similarity=-0.011  Sum_probs=69.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYF  213 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~  213 (266)
                      +++++|+.+|.++|+++|++..+|+++|.++. ..|++++|+.+|++|+.++|+++.++..++.+........++....|
T Consensus        78 ~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~-~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~  156 (168)
T d1kt1a1          78 REYTKAVECCDKALGLDSANEKGLYRRGEAQL-LMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTY  156 (168)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccchhhhhhhhhcccchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            78999999999999999999999999999886 68999999999999999999999999999887655433334444444


Q ss_pred             HHHH
Q 024536          214 DRAV  217 (266)
Q Consensus       214 ekAL  217 (266)
                      .+..
T Consensus       157 ~~~f  160 (168)
T d1kt1a1         157 ANMF  160 (168)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.84  E-value=5.5e-09  Score=90.48  Aligned_cols=114  Identities=12%  Similarity=0.038  Sum_probs=94.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPED------ALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD------GNVLSMYGDLIWI  201 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~------~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d------a~al~nla~ll~~  201 (266)
                      +++++|+.+|++++++.+..      ..++.++|.++....+++++|+.+|++|+.+.+.+      ..++.++|.++..
T Consensus        91 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~  170 (290)
T d1qqea_          91 GNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL  170 (290)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHH
Confidence            68999999999999997776      57788888776544699999999999999875432      4668889998876


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCccccccccc
Q 024536          202 NHKDAPRAKSYFDRAVHSAPDDC-------HVLASYARFLWDAGEEEDDDDGDD  248 (266)
Q Consensus       202 ~~gd~deAi~~~ekAL~l~P~da-------~a~~~lA~ll~~~G~~~eA~~~~~  248 (266)
                       .|++++|+.+|++++...|.+.       .++...+.++...++++.|.+..+
T Consensus       171 -~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~  223 (290)
T d1qqea_         171 -DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQ  223 (290)
T ss_dssp             -TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             -cChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence             8999999999999999998875       345678888889999999985433

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.82  E-value=2.4e-08  Score=82.25  Aligned_cols=87  Identities=9%  Similarity=0.038  Sum_probs=75.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCCH----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDA----------------------LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNV  191 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~----------------------~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~a  191 (266)
                      +++++|+.+|++||++.+++.                      .++.+++.++. ..|++++|+.+++++|+++|.+..+
T Consensus        25 g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~-~~g~~~~Al~~~~~al~~~P~~e~~  103 (179)
T d2ff4a2          25 GRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEI-ACGRASAVIAELEALTFEHPYREPL  103 (179)
T ss_dssp             TCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred             CCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCchHHHHHHHHHHHhCCccHHH
Confidence            689999999999999988663                      45677777665 5899999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHH-------HHhCCC
Q 024536          192 LSMYGDLIWINHKDAPRAKSYFDRA-------VHSAPD  222 (266)
Q Consensus       192 l~nla~ll~~~~gd~deAi~~~ekA-------L~l~P~  222 (266)
                      |.+++.+++. .|++++|+..|+++       +-++|.
T Consensus       104 ~~~l~~al~~-~Gr~~eAl~~y~~~~~~L~~eLG~~P~  140 (179)
T d2ff4a2         104 WTQLITAYYL-SDRQSDALGAYRRVKTTLADDLGIDPG  140 (179)
T ss_dssp             HHHHHHHHHT-TTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence            9999999877 79999999999998       446775

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.81  E-value=4.2e-09  Score=83.75  Aligned_cols=91  Identities=15%  Similarity=0.035  Sum_probs=74.3

Q ss_pred             HHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024536          154 ALVLANY--AKFLKEIRGDFVKAEEYCGRAILAKPGD------------GNVLSMYGDLIWINHKDAPRAKSYFDRAVHS  219 (266)
Q Consensus       154 ~~al~nl--A~~L~~~~gd~e~A~~~~erAL~ldP~d------------a~al~nla~ll~~~~gd~deAi~~~ekAL~l  219 (266)
                      +.++.++  |...+ ..|+|++|+..|++||+++|+.            +.+|.++|.++.. .|++++|+..+++|+.+
T Consensus         7 a~a~~~l~~g~~~~-~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~-lg~~~~A~~~~~~al~~   84 (156)
T d2hr2a1           7 VGAYLALSDAQRQL-VAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG-LRSFDEALHSADKALHY   84 (156)
T ss_dssp             HHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHH-cCccchhhHhhhhhhhc
Confidence            3455555  44443 4699999999999999999875            4678899999877 79999999999999987


Q ss_pred             CCC-----------CHHHHHHHHHHHHHcCCccccccc
Q 024536          220 APD-----------DCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       220 ~P~-----------da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      .|.           ...+++++|.+|..+|++++|++.
T Consensus        85 ~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~  122 (156)
T d2hr2a1          85 FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPE  122 (156)
T ss_dssp             HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHH
Confidence            552           234688999999999999999954

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.79  E-value=1.3e-08  Score=85.15  Aligned_cols=111  Identities=8%  Similarity=0.126  Sum_probs=91.8

Q ss_pred             CCHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHH
Q 024536          134 KESESMDVYYQEMIKAYPEDA-----LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGD------GNVLSMYGDLIWIN  202 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~-----~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~d------a~al~nla~ll~~~  202 (266)
                      +++++|+.+|++||+..|++.     .++.++|.++. ..|++++|+.+|++|+.+.+..      ..++.+++.++.. 
T Consensus        26 g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-  103 (366)
T d1hz4a_          26 GNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH-CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA-  103 (366)
T ss_dssp             TCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-
T ss_pred             CCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH-
Confidence            689999999999999999873     57888998876 5899999999999999976543      3456777877765 


Q ss_pred             cCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCccccccc
Q 024536          203 HKDAPRAKSYFDRAVHSAPD--------DCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       203 ~gd~deAi~~~ekAL~l~P~--------da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      .+++.+|+.++.+++.+.+.        .+.++..+|.++...++++.+...
T Consensus       104 ~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~  155 (366)
T d1hz4a_         104 QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEAS  155 (366)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHH
Confidence            89999999999999986542        234667889999999999988843

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.68  E-value=4.3e-08  Score=80.69  Aligned_cols=91  Identities=9%  Similarity=-0.014  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------------HHHHHHHHHHHHHcCCHHHHHHH
Q 024536          155 LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG----------------------NVLSMYGDLIWINHKDAPRAKSY  212 (266)
Q Consensus       155 ~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da----------------------~al~nla~ll~~~~gd~deAi~~  212 (266)
                      ..+.+.|..+. ..|++++|..+|.+||.+.|++.                      .++.+++.++.. .|++++|+.+
T Consensus        12 ~~~~~~g~~~~-~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~-~g~~~~Al~~   89 (179)
T d2ff4a2          12 VAEKTAGVHAA-AAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIA-CGRASAVIAE   89 (179)
T ss_dssp             HHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHH
T ss_pred             HHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHH
Confidence            45666676665 58999999999999999988663                      467778888766 7999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCcccccccc
Q 024536          213 FDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDGD  247 (266)
Q Consensus       213 ~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~~  247 (266)
                      +++++.++|.+..+|..++.+|...|+..+|+++.
T Consensus        90 ~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y  124 (179)
T d2ff4a2          90 LEALTFEHPYREPLWTQLITAYYLSDRQSDALGAY  124 (179)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            99999999999999999999999999999999653

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.65  E-value=2.7e-08  Score=87.00  Aligned_cols=79  Identities=23%  Similarity=0.250  Sum_probs=72.0

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCccccccc
Q 024536          167 IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       167 ~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                      ..|++++|++.|+++|+.+|+|+.++.+++.++.. .|++++|+..|+++++++|++..++..++.++...+..+++...
T Consensus         8 ~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~-~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~   86 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCI-DGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQG   86 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHH
Confidence            36999999999999999999999999999999876 79999999999999999999999999999988877777666543

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.56  E-value=1.2e-07  Score=73.45  Aligned_cols=96  Identities=17%  Similarity=0.138  Sum_probs=78.8

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---cCCHHH
Q 024536          132 SGKESESMDVYYQEMIKAYPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN---HKDAPR  208 (266)
Q Consensus       132 ~~~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~---~gd~de  208 (266)
                      ..+++++|+.+|++|.+.+  ++.+.++++..   ...++++|..+|++|.+.  +++.+++++|.++..-   ..|+++
T Consensus         5 v~kd~~~A~~~~~kaa~~g--~~~a~~~l~~~---~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~   77 (133)
T d1klxa_           5 VKKDLKKAIQYYVKACELN--EMFGCLSLVSN---SQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRK   77 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHTT--CTTHHHHHHTC---TTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred             cccCHHHHHHHHHHHHHCC--Chhhhhhhccc---cccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHH
Confidence            4478999999999999874  67777787753   357899999999999875  7899999999887541   357899


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 024536          209 AKSYFDRAVHSAPDDCHVLASYARFLWD  236 (266)
Q Consensus       209 Ai~~~ekAL~l~P~da~a~~~lA~ll~~  236 (266)
                      |+.+|++|.+.  .++.+...||.+|..
T Consensus        78 A~~~~~~aa~~--g~~~a~~~Lg~~y~~  103 (133)
T d1klxa_          78 AAQYYSKACGL--NDQDGCLILGYKQYA  103 (133)
T ss_dssp             HHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhcc--CcchHHHHHHHHHHc
Confidence            99999999876  578888999988876

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.53  E-value=2.1e-07  Score=73.14  Aligned_cols=77  Identities=16%  Similarity=-0.039  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 024536          154 ALVLANYAKFLKE--IRGDFVKAEEYCGRAILAKPGDG-NVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDDCHVLASY  230 (266)
Q Consensus       154 ~~al~nlA~~L~~--~~gd~e~A~~~~erAL~ldP~da-~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~da~a~~~l  230 (266)
                      +...++||+.|..  ...+.++|+.+++.+++.+|.+. ++++++|+.+++ .|+|++|+.+++++|+++|++..+....
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyk-lgdy~~A~~~~~~~L~ieP~n~qA~~L~  113 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK-LGEYSMAKRYVDTLFEHERNNKQVGALK  113 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHccCCCcHHHHHHH
Confidence            6789999998852  12467899999999999999875 799999999988 7999999999999999999999886544


Q ss_pred             H
Q 024536          231 A  231 (266)
Q Consensus       231 A  231 (266)
                      -
T Consensus       114 ~  114 (124)
T d2pqrb1         114 S  114 (124)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.46  E-value=1.9e-07  Score=77.87  Aligned_cols=95  Identities=16%  Similarity=0.094  Sum_probs=78.0

Q ss_pred             CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-
Q 024536          150 YPEDALVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDG-----NVLSMYGDLIWINHKDAPRAKSYFDRAVHSAPDD-  223 (266)
Q Consensus       150 ~P~~~~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da-----~al~nla~ll~~~~gd~deAi~~~ekAL~l~P~d-  223 (266)
                      ++-+++++...|.++. ..|++++|+.+|++||...|++.     .++.++|.++.. .|++++|+.+|++++.+.|.. 
T Consensus         8 ~~~~ae~~~lrA~~~~-~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~-~g~~~~A~~~~~~a~~~~~~~~   85 (366)
T d1hz4a_           8 DTMHAEFNALRAQVAI-NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHC-KGELTRSLALMQQTEQMARQHD   85 (366)
T ss_dssp             HHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHTT
T ss_pred             cchhHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhhc
Confidence            3445666666777765 58999999999999999999873     578889988876 799999999999999987643 


Q ss_pred             -----HHHHHHHHHHHHHcCCccccccc
Q 024536          224 -----CHVLASYARFLWDAGEEEDDDDG  246 (266)
Q Consensus       224 -----a~a~~~lA~ll~~~G~~~eA~~~  246 (266)
                           ..++..++.++...+++..|.+.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~  113 (366)
T d1hz4a_          86 VWHYALWSLIQQSEILFAQGFLQTAWET  113 (366)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 34677899999999999999853

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.31  E-value=4.9e-06  Score=63.95  Aligned_cols=88  Identities=17%  Similarity=0.218  Sum_probs=73.3

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HcCC
Q 024536          132 SGKESESMDVYYQEMIKAYPEDALVLANYAKFLKE---IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWI---NHKD  205 (266)
Q Consensus       132 ~~~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~---~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~---~~gd  205 (266)
                      ...+.++|+.+|+++.+.  +++.+.+++|.++..   ...|+++|..+|++|.+.  .++.+++++|.++..   ...|
T Consensus        35 ~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d  110 (133)
T d1klxa_          35 SQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKN  110 (133)
T ss_dssp             TTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC
T ss_pred             cccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCC
Confidence            346899999999999875  789999999987752   135799999999999875  678999999998865   2468


Q ss_pred             HHHHHHHHHHHHHhCCCC
Q 024536          206 APRAKSYFDRAVHSAPDD  223 (266)
Q Consensus       206 ~deAi~~~ekAL~l~P~d  223 (266)
                      +++|+.+|++|.++...+
T Consensus       111 ~~~A~~~~~~Aa~~G~~~  128 (133)
T d1klxa_         111 EKQAVKTFEKACRLGSED  128 (133)
T ss_dssp             HHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHCCCHH
Confidence            999999999999986544

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.10  E-value=1.9e-05  Score=65.74  Aligned_cols=99  Identities=15%  Similarity=0.223  Sum_probs=73.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---cCCHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKE---IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN---HKDAP  207 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~---~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~---~gd~d  207 (266)
                      +++++|+++|++|.+.  +++.++++||.++..   +..++..|..+++++...  .++.++.++|.++...   ..+.+
T Consensus        16 ~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~l~~~~~~~~~~~~~~~   91 (265)
T d1ouva_          16 KDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLLGNLYYSGQGVSQNTN   91 (265)
T ss_dssp             TCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred             CCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhhccccccccccccchhhH
Confidence            5889999999998764  688899999987753   246888999998887764  4778888888766431   35788


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 024536          208 RAKSYFDRAVHSAPDDCHVLASYARFLWDAG  238 (266)
Q Consensus       208 eAi~~~ekAL~l~P~da~a~~~lA~ll~~~G  238 (266)
                      .|..+|++++...+.  .+...++..+....
T Consensus        92 ~a~~~~~~a~~~g~~--~a~~~l~~~~~~~~  120 (265)
T d1ouva_          92 KALQYYSKACDLKYA--EGCASLGGIYHDGK  120 (265)
T ss_dssp             HHHHHHHHHHHTTCH--HHHHHHHHHHHHCS
T ss_pred             HHHHHHhhhhhhhhh--hHHHhhcccccCCC
Confidence            899999998876554  55566776666543

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.98  E-value=8.6e-06  Score=63.71  Aligned_cols=64  Identities=9%  Similarity=0.009  Sum_probs=56.8

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 024536          132 SGKESESMDVYYQEMIKAYPEDA-LVLANYAKFLKEIRGDFVKAEEYCGRAILAKPGDGNVLSMYG  196 (266)
Q Consensus       132 ~~~~~eeA~~~y~rALel~P~~~-~al~nlA~~L~~~~gd~e~A~~~~erAL~ldP~da~al~nla  196 (266)
                      ...+..+|+.+|+++++.+|.+. +.|+++|..++ ..|+|++|.++++++|+++|+|..+....-
T Consensus        50 ~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yy-klgdy~~A~~~~~~~L~ieP~n~qA~~L~~  114 (124)
T d2pqrb1          50 DVNDERLGVKILTDIYKEAESRRRECLYYLTIGCY-KLGEYSMAKRYVDTLFEHERNNKQVGALKS  114 (124)
T ss_dssp             CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence            44688999999999999999875 89999999887 589999999999999999999999876444

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.97  E-value=3.1e-05  Score=64.38  Aligned_cols=96  Identities=11%  Similarity=0.063  Sum_probs=49.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---cCCHH
Q 024536          134 KESESMDVYYQEMIKAYPEDALVLANYAKFLKE---IRGDFVKAEEYCGRAILAKPGDGNVLSMYGDLIWIN---HKDAP  207 (266)
Q Consensus       134 ~~~eeA~~~y~rALel~P~~~~al~nlA~~L~~---~~gd~e~A~~~~erAL~ldP~da~al~nla~ll~~~---~gd~d  207 (266)
                      .....|...+.++..  +.++.++.++|.++..   ...+...+..+++++.+  +.++.+++++|.++...   .+|++
T Consensus       124 ~~~~~a~~~~~~~~~--~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~  199 (265)
T d1ouva_         124 RDFKKAVEYFTKACD--LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFK  199 (265)
T ss_dssp             CCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHH
T ss_pred             chhHHHHHHhhhhhc--ccccchhhhhhhhhccCCCcccccccchhhhhcccc--ccccccccchhhhcccCcccccchh
Confidence            344555555555433  4445555555555442   13445555555555553  34555566666544321   23566


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 024536          208 RAKSYFDRAVHSAPDDCHVLASYARFLW  235 (266)
Q Consensus       208 eAi~~~ekAL~l~P~da~a~~~lA~ll~  235 (266)
                      +|+.+|++|.+.  +++.+++++|.++.
T Consensus       200 ~A~~~~~~aa~~--g~~~a~~~LG~~y~  225 (265)
T d1ouva_         200 EALARYSKACEL--ENGGGCFNLGAMQY  225 (265)
T ss_dssp             HHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             hhhhhHhhhhcc--cCHHHHHHHHHHHH
Confidence            666666666554  34555555665554

>d3efza1 a.118.7.1 (A:46-268) 14-3-3 protein cgd1_2980 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 protein cgd1 2980
species: Cryptosporidium parvum [TaxId: 5807]

Probab=88.74  E-value=0.26  Score=40.98  Aligned_cols=46  Identities=26%  Similarity=0.539  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHH-------CCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024536          137 ESMDVYYQEMIKA-------YPEDAL---VLANYAKFLKEIRGDFVKAEEYCGRAI  182 (266)
Q Consensus       137 eeA~~~y~rALel-------~P~~~~---al~nlA~~L~~~~gd~e~A~~~~erAL  182 (266)
                      ++|...|++|+++       .|.||.   +..|++.|+|+..++.++|.++.++|+
T Consensus       124 ~~a~~aY~~A~~~a~~~l~l~pt~PirLGLaLN~SVF~YEi~~~~~~A~~lAk~Af  179 (223)
T d3efza1         124 KQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAI  179 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhccCccCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3455555555432       144542   334555555555555555555554444

>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: zeta isoform
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.69  E-value=0.44  Score=39.54  Aligned_cols=24  Identities=13%  Similarity=0.065  Sum_probs=12.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHH
Q 024536          194 MYGDLIWINHKDAPRAKSYFDRAV  217 (266)
Q Consensus       194 nla~ll~~~~gd~deAi~~~ekAL  217 (266)
                      |++++++...++.++|..+.++|+
T Consensus       173 N~SVF~YEi~~~~~~A~~lak~af  196 (230)
T d2o02a1         173 NFSVFYYEILNSPEKACSLAKTAF  196 (230)
T ss_dssp             HHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHcCCHHHHHHHHHHHH
Confidence            445555555555555555554444

>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: zeta isoform
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.65  E-value=1.1  Score=36.92  Aligned_cols=39  Identities=10%  Similarity=0.230  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHH-----hCCCCHHH---HHHHHHHHHHc-CCcccccc
Q 024536          207 PRAKSYFDRAVH-----SAPDDCHV---LASYARFLWDA-GEEEDDDD  245 (266)
Q Consensus       207 deAi~~~ekAL~-----l~P~da~a---~~~lA~ll~~~-G~~~eA~~  245 (266)
                      ++|...|++|+.     +.|.+|-.   ..+++.|+++. ++.++|.+
T Consensus       143 ~~a~~aY~~A~~~A~~~L~~t~pirLgL~LN~SVF~YEi~~~~~~A~~  190 (230)
T d2o02a1         143 DQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACS  190 (230)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCchHHHHHHHhHHHHHHHHcCCHHHHHH
Confidence            456677777664     45666653   34677777665 55666653

>d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3-like protein C
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=87.61  E-value=1.4  Score=36.44  Aligned_cols=49  Identities=10%  Similarity=-0.049  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHH-----hCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 024536          171 FVKAEEYCGRAIL-----AKPGDGN---VLSMYGDLIWINHKDAPRAKSYFDRAVHS  219 (266)
Q Consensus       171 ~e~A~~~~erAL~-----ldP~da~---al~nla~ll~~~~gd~deAi~~~ekAL~l  219 (266)
                      .++|...|++|+.     +.|.||-   ...|++++++...++.++|..+.++|+..
T Consensus       147 ~~~a~~aY~~A~~~a~~~l~pt~PirLgLaLN~SVF~yEi~~~~~~A~~lak~afd~  203 (236)
T d1o9da_         147 AESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE  203 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3678889999885     5788884   45678999999899999999999988753

>d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3-like protein C
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=86.53  E-value=0.71  Score=38.41  Aligned_cols=48  Identities=21%  Similarity=0.213  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHH-----HCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024536          136 SESMDVYYQEMIK-----AYPEDAL---VLANYAKFLKEIRGDFVKAEEYCGRAIL  183 (266)
Q Consensus       136 ~eeA~~~y~rALe-----l~P~~~~---al~nlA~~L~~~~gd~e~A~~~~erAL~  183 (266)
                      .++|...|++|++     +.|.||.   +..|++.|+++..++.++|....++|+.
T Consensus       147 ~~~a~~aY~~A~~~a~~~l~pt~PirLgLaLN~SVF~yEi~~~~~~A~~lak~afd  202 (236)
T d1o9da_         147 AESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD  202 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            5678899999875     4788884   5589999999999999999998888875

>d3efza1 a.118.7.1 (A:46-268) 14-3-3 protein cgd1_2980 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 protein cgd1 2980
species: Cryptosporidium parvum [TaxId: 5807]

Probab=80.99  E-value=1  Score=37.14  Aligned_cols=47  Identities=21%  Similarity=0.232  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHh-------CCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 024536          172 VKAEEYCGRAILA-------KPGDGN---VLSMYGDLIWINHKDAPRAKSYFDRAVH  218 (266)
Q Consensus       172 e~A~~~~erAL~l-------dP~da~---al~nla~ll~~~~gd~deAi~~~ekAL~  218 (266)
                      ++|...|++|+.+       .|.||-   ...|+++++++..++.++|..+.++|+.
T Consensus       124 ~~a~~aY~~A~~~a~~~l~l~pt~PirLGLaLN~SVF~YEi~~~~~~A~~lAk~Afd  180 (223)
T d3efza1         124 KQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQ  180 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhccCccCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            6788899998764       377873   4568899999989999999999888873