Citrus Sinensis ID: 024543

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260------
Protein Sequence
MDITFVLPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKFLPSDYKEIISNSSSISASSLMITSLSKKDLYFYLCHNPILINNHTTSFSLVQETGKKCYMVGARVLSIAWGDSPQYWNWLSLREFRFPEVVKLREVWWFEIIARIETRILSFKTNYAAYLVFKFVKSRQGFDARPIEFDVYFEGSNNHKRRSALLDPPTNVSPQLSQDRGDGWTEIEMGDFFNENGDDGTVVCRLCEPGSVQKRGIITQGIELRPKYGK
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHcccHHHHHHHHcccHHHHHccccHHHHHcccccccHHHHHccccccccccccccccHHHHHHHHHccccccccccEEEEEEEccccEEEEEccEEEEEEcccccccEEEEcccccccccEEEEEEEEEEEEEEEEEEEEcccccEEEEEEEEEEcccccccccccEEEEEEEccccEEEEEEEEccccccccccccccccccEEEEEEEEEEcccccccEEEEEEEEEcccccccEEEEEEEEEccccc
Secondary Structure Prediction (SSPRO)
ccHHHHccHHHHHHHHHHcccHHHHHHHHHcHHHHHHHcccHHHHHHccccHHHHHHHcccccccccccccccHHHHHHHHHcccEEEccccEEEEEEcccccEEEEEEccEEEEEEccccccEEEcccccccHHHHHHHHHEEEEEEEEEEcccEcccccEEEEEEEEEEcccccccccccEEEEEEEccccEEEEEEEEccccccccccccccccccEEEEEEEEEEEccccccEEEEEEEEEccccccEEEEEEEEEEccccc
Coil and Loop (DISEMBL)
MDITFVLPAQCISYIISlttprdasrlslacpafkstadsdsvwekflpsdykeiisnsssisaSSLMITSLSKKDLYFYLchnpilinnhttSFSLVQETGKKCYMVGARVLSiawgdspqywnwlslrefrfpevvKLREVWWFEIIARIETRILSFKTNYAAYLVFKFVKsrqgfdarpiefdvyfegsnnhkrrsalldpptnvspqlsqdrgdgwteiemgdffnengddgtvvcrlcepgsvqkrgiitqgielrpkygk
Flexible Loop (DISEMBL)
MDITFVLPAQCISYIISLTTPRDASRLSLACPafkstadsdsvwEKFLPSDYKEIisnsssisaSSLMITSLSKKDLYFYLCHNPILINNHTTSFSLVQETGKKCYMVGARVLSIAWGDSPQYWNWLSLREFRFPEVVKLREVWWFEIIARIETRILSFKTNYAAYLVFKFVKSRQGFDARPIEFDVYFEGSNNHKrrsalldpptnvspqlsqdrgDGWTEIEMGDFFNENGDDGTVVCRLCepgsvqkrgiitqgielrpkygk
Low Complexity Region (SEG)
MDITFVLPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKFLPSDYKEiisnsssisasslmitslsKKDLYFYLCHNPILINNHTTSFSLVQETGKKCYMVGARVLSIAWGDSPQYWNWLSLREFRFPEVVKLREVWWFEIIARIETRILSFKTNYAAYLVFKFVKSRQGFDARPIEFDVYFEGSNNHKRRSALLDPPTNVSPQLSQDRGDGWTEIEMGDFFNENGDDGTVVCRLCEPGSVQKRGIITQGIELRPKYGK
Disordered region (IsUnstruct)
**ITFVLPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKFLPSDYKEIIS*******SSLMITSLSKKDLYFYLCHNPILINNHTTSFSLVQETGKKCYMVGARVLSIAWGDSPQYWNWLSLREFRFPEVVKLREVWWFEIIARIETRILSFKTNYAAYLVFKFVKSRQGFDARPIEFDVYFE*****************************WTEIEMGDFFNENGDDGTVVCRLCEPGSVQKRGIITQGI********
Disordered Region (DISOPRED)
*DITFVLPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKFLPSDYKEIIS******************DLYFYLCHNPILINNHTTSFSLVQETGKKCYMVGARVLSIAWGDSPQYWNWLSLREFRFPEVVKLREVWWFEIIARIETRILSFKTNYAAYLVFKFVKSRQGFDARPIEFDVYFEGSNNHKRRSALLDP*********QDRGDGWTEIEMGDFFNENGDDGTVVCRLCEPGSVQKRGIITQGIELRPKYG*
Disordered Region (DISEMBL)
MDITFVLPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKFLPSDYKEIISNSSSISASSLMITSLSKKDLYFYLCHNPILINNHTTSFSLVQETGKKCYMVGARVLSIAWGDSPQYWNWLSLREFRFPEVVKLREVWWFEIIARIETRILSFKTNYAAYLVFKFVKSRQGFDARPIEFDVYFEGSNNHKRRSALLDPPTNVSPQLSQDRGDGWTEIEMGDFFNENGDDGTVVCRLCEPGSVQKRGIITQGIELRPKYGK
Disordered Region (DISPRO)
MDITFVLPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKFLPSDYKEIISNSSS********TSLSKKDLYFYLCHNPILINNHTTSFSLVQETGKKCYMVGARVLSIAWGDSPQYWNWLSLREFRFPEVVKLREVWWFEIIARIETRILSFKTNYAAYLVFKFVKSRQGFDARPIEFDVYFEGSNNHKRRSALLDPPTNVSPQLSQDRGDGWTEIEMGDFFNENGDDGTVVCRLCEPGSVQKRGIITQGIELRPKY**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDITFVLPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKFLPSDYKEIISNSSSISASSLMITSLSKKDLYFYLCHNPILINNHTTSFSLVQETGKKCYMVGARVLSIAWGDSPQYWNWLSLREFRFPEVVKLREVWWFEIIARIETRILSFKTNYAAYLVFKFVKSRQGFDARPIEFDVYFEGSNNHKRRSALLDPPTNVSPQLSQDRGDGWTEIEMGDFFNENGDDGTVVCRLCEPGSVQKRGIITQGIELRPKYGK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	266	2.2.26 [Sep-21-2011]
Q9ZVQ6	272	F-box protein PP2-B10 OS=	yes	no	0.921	0.900	0.433	3e-51
Q3E6P4	320	F-box protein At2g02240 O	no	no	0.932	0.775	0.399	2e-48
Q949S5	257	F-box protein PP2-B11 OS=	no	no	0.924	0.957	0.412	7e-48
Q9FLU7	251	Putative F-box protein PP	no	no	0.909	0.964	0.403	4e-47
Q9ZVR5	310	Putative F-box protein PP	no	no	0.928	0.796	0.406	7e-47
Q9ZVQ8	305	Putative F-box protein PP	no	no	0.906	0.790	0.377	3e-43
Q6NPT8	336	F-box protein PP2-B1 OS=A	no	no	0.921	0.729	0.353	8e-43
Q9ZVR0	307	Putative F-box protein PP	no	no	0.921	0.798	0.371	7e-41
Q9FV02	294	F-box protein SKIP3 OS=Ar	no	no	0.887	0.802	0.358	2e-39
O80494	289	F-box protein PP2-B15 OS=	no	no	0.947	0.871	0.372	4e-38

>sp|Q9ZVQ6|P2B10_ARATH F-box protein PP2-B10 OS=Arabidopsis thaliana GN=PP2B10 PE=1 SV=1

 Score =  202 bits (513), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 114/263 (43%), Positives = 152/263 (57%), Gaps = 18/263 (6%)

Query: 7   LPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKFLPSDYKEIISNSSSISASS 66
            P  CISYIIS T PRDA   +     F+ST  SD +WEKFLP+DY+ +I  S   S   
Sbjct: 17  FPEDCISYIISFTNPRDACVAATVSKTFESTVKSDIIWEKFLPADYESLIPPSRVFS--- 73

Query: 67  LMITSLSKKDLYFYLCHNPILINNHTTSFSLVQETGKKCYMVGARVLSIAWGDSPQYWNW 126
                 SKK+LYF LC++P+L ++   S  L + +GK+C M+ A  LSI WGD+PQYW W
Sbjct: 74  ------SKKELYFSLCNDPVLFDDDKKSVWLEKASGKRCLMLSAMNLSIIWGDNPQYWQW 127

Query: 127 LSLREFRFPEVVKLREVWWFEIIARIETRILSFKTNYAAYLVFKFVKSRQGFDARPIEFD 186
           + + E RF +V KLR+V WFEI  R  TR+LS +T Y+AY+VFK V    GF    IE  
Sbjct: 128 IPIPESRFEKVAKLRDVCWFEIRGRTNTRVLSPRTRYSAYIVFKGVDKCYGFQNVAIEAA 187

Query: 187 VYFEGSNNHKR----RSALLDPPTNVSPQLSQDRGDGWTEIEMGDFFNENG--DDGTVVC 240
           V   G    +R      A+     NV     + R DGW EIE+G+FFN+ G  D+  +  
Sbjct: 188 VGVVGQEPSRRLICFSEAIRRGRRNVVK--PKQREDGWMEIELGEFFNDGGIMDNDEIEM 245

Query: 241 RLCEPGSVQKR-GIITQGIELRP 262
              E   + ++ G+I QGIE+RP
Sbjct: 246 SALETKQLNRKCGLIIQGIEIRP 268

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q3E6P4|FB95_ARATH F-box protein At2g02240 OS=Arabidopsis thaliana GN=At2g02240 PE=2 SV=1

 Score =  192 bits (488), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 105/263 (39%), Positives = 145/263 (55%), Gaps = 15/263 (5%)

Query: 6   VLPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKFLPSDYKEIISNSSSISAS 65
           VLP  CIS IIS T+PRDA   +     F+S   SD VW+KFLP +Y+ ++S S   +  
Sbjct: 63  VLPEDCISNIISFTSPRDACVAASVSKTFESAVSSDCVWDKFLPPEYESLVSRSRVFA-- 120

Query: 66  SLMITSLSKKDLYFYLCHNPILINNHTTSFSLVQETGKKCYMVGARVLSIAWGDSPQYWN 125
                  SKK+LYF LCHNP+LI +   SF L + +GK+C M+ ++ L I WG SP+YW 
Sbjct: 121 -------SKKELYFALCHNPVLIEDGKKSFWLEKASGKRCIMLSSKELWITWGSSPEYWQ 173

Query: 126 WLSLREFRFPEVVKLREVWWFEIIARIETRILSFKTNYAAYLVFKFVKSRQGFDARPIEF 185
           W+S+ E RF ++ +L +V WFEI  +   R+LS  T Y+AY+VFK      G    P+E 
Sbjct: 174 WISIPESRFNKIAELLDVCWFEIRGKTSARVLSPGTRYSAYIVFKTKDRCPGLGHLPVEV 233

Query: 186 DVYFEGSNNHKRRSALLDPPTNVSPQLSQD------RGDGWTEIEMGDFFNENGDDGTVV 239
            +   G  + KR    + P      + ++D      R DGW E E+G+FFNE   D    
Sbjct: 234 GLGLVGQESSKRFIYFIGPRDRRGRRETRDVTKPDQREDGWMEAELGEFFNEERCDEIEF 293

Query: 240 CRLCEPGSVQKRGIITQGIELRP 262
             +       K G+I QGIE RP
Sbjct: 294 SVIEIKSPSWKSGLIIQGIEFRP 316

Arabidopsis thaliana (taxid: 3702)

>sp|Q949S5|P2B11_ARATH F-box protein PP2-B11 OS=Arabidopsis thaliana GN=PP2B11 PE=1 SV=1

 Score =  190 bits (483), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 108/262 (41%), Positives = 147/262 (56%), Gaps = 16/262 (6%)

Query: 7   LPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKFLPSDYKEIISNSSSISASS 66
           LP  CI+ I+SLTTP D  RLS     F+S A SD VW  FLP+D+    +  + +    
Sbjct: 4   LPEDCIAKILSLTTPLDVCRLSAVSSIFRSAAGSDDVWNHFLPADFPAGFAAPAGLP--- 60

Query: 67  LMITSLSKKDLYFYLCHNPILINNHTTSFSLVQETGKKCYMVGARVLSIAWGDSPQYWNW 126
                 ++K L+F L  NP+LIN    SFSL +++G KCYM+ AR L+I WG   +YW+W
Sbjct: 61  ------TRKQLFFSLVDNPLLINGTLLSFSLERKSGNKCYMMAARALNIVWGHEQRYWHW 114

Query: 127 LSLREFRFPEVVKLREVWWFEIIARIETRILSFKTNYAAYLVFKFVKSRQGFDARPIEFD 186
           +SL   RF EV +L  VWW EI  +I   +LS  T YAAY VFK+  S  GF  +P+E  
Sbjct: 115 ISLPNTRFGEVAELIMVWWLEITGKINITLLSDDTLYAAYFVFKWNHSPYGF-RQPVETS 173

Query: 187 VYF---EGSNNHKRRS--ALLDPPTNVSPQLSQDRGDGWTEIEMGDFFNENGDDGTVVCR 241
           +     E ++N  + S  +L+        Q    R DGW E+E+G FF   GD G +   
Sbjct: 174 LVLADTESTDNVVQPSMISLMQDSGGEEGQSPVLRRDGWYEVELGQFFKRRGDLGEIEMS 233

Query: 242 LCE-PGSVQKRGIITQGIELRP 262
           L E  G  +K+G+I  GIE+RP
Sbjct: 234 LKETKGPYEKKGLIVYGIEIRP 255

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLU7|P2B12_ARATH Putative F-box protein PP2-B12 OS=Arabidopsis thaliana GN=PP2B12 PE=4 SV=1

 Score =  188 bits (477), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 104/258 (40%), Positives = 147/258 (56%), Gaps = 16/258 (6%)

Query: 7   LPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKFLPSDYKEIISNSSSISASS 66
           LP +CI+ +IS T+P DA R+S      +S ADS++ WE+FLPSDY+  I NS       
Sbjct: 6   LPEECIATMISFTSPFDACRISAVSKLLRSAADSNTTWERFLPSDYRMYIDNS------- 58

Query: 67  LMITSLSKKDLYFYLCHNPILINNHTTSFSLVQETGKKCYMVGARVLSIAWGDSPQYWNW 126
             ++  S K L+   C +P+LI +  TSF + + +GKKC+M+ AR L I W DSP++W W
Sbjct: 59  --LSRFSNKQLFLRFCESPLLIEDGRTSFWMEKRSGKKCWMLSARKLDIVWVDSPEFWIW 116

Query: 127 LSLREFRFPEVVKLREVWWFEIIARIETRILSFKTNYAAYLVFKFVKSRQ-GFDARPIEF 185
           +S+ + RF EV  L  V WFEI  +I T +LS  TNY+AYLVFK  +    GF++ P+E 
Sbjct: 117 VSIPDSRFEEVAGLLMVCWFEIRGKISTSLLSKATNYSAYLVFKEQEMGSFGFESLPLEV 176

Query: 186 DVYFEGSNNHKRRSALLDPPTNVSPQLSQDRGDGWTEIEMGDFFNENGDDGTVVCRLCEP 245
                 +  +  R   L   T       + R DGW EIE+G+++    D+   +  L   
Sbjct: 177 SFRSTRTEVYNNRRVFLKSGTQ------ESREDGWLEIELGEYYVGFDDEEIEMSVLETR 230

Query: 246 GSVQKRGIITQGIELRPK 263
               K GII QGIE+RPK
Sbjct: 231 EGGWKGGIIVQGIEIRPK 248

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVR5|PP2B2_ARATH Putative F-box protein PP2-B2 OS=Arabidopsis thaliana GN=PP2B2 PE=4 SV=2

 Score =  187 bits (475), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 107/263 (40%), Positives = 143/263 (54%), Gaps = 16/263 (6%)

Query: 7   LPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKFLPSDYKEIISNSSSISASS 66
           LP  CIS IIS T+PRDA   +     F+S  +SDSVW+KFLPSDY  ++  S   S   
Sbjct: 50  LPEDCISNIISFTSPRDACVAASVSKTFESAVNSDSVWDKFLPSDYSSLVPPSRVFS--- 106

Query: 67  LMITSLSKKDLYFYLCHNPILINNHTTSFSLVQETGKKCYMVG-ARVLSIAWGDSPQYWN 125
                 SKK+LYF +C NP+L+ +   SF L +E GKKC+M+   + + I W  +PQYW 
Sbjct: 107 ------SKKELYFAICDNPVLVEDGGKSFWLEKENGKKCFMLSPKKSMWITWVSTPQYWR 160

Query: 126 WLSLREFRFPEVVKLREVWWFEIIARIETRILSFKTNYAAYLVFKFVKSRQGFDARPIEF 185
           W+S+ E RF EV +L  V WFE+   + T+ LS  T Y+AY+VFK           P+E 
Sbjct: 161 WISIPEARFEEVPELLNVCWFEVRGGMNTKELSPGTRYSAYIVFKTKNGCPNLGDVPVEA 220

Query: 186 DVYFEGSNNHKRRSALLDPPTNVSPQLSQD------RGDGWTEIEMGDFFNENGDDGTVV 239
            V   G  + +R    + P      + ++D      R DGW E E+G FFNE+G D    
Sbjct: 221 TVGLVGQESSQRHIYFVGPSDQRRDRETRDVTRPTKRKDGWMEAELGQFFNESGCDVVDT 280

Query: 240 CRLCEPGSVQKRGIITQGIELRP 262
             L       KRG+I QGIE RP
Sbjct: 281 SILEIKTPYWKRGLIIQGIEFRP 303

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVQ8|PP2B8_ARATH Putative F-box protein PP2-B8 OS=Arabidopsis thaliana GN=PP2B8 PE=4 SV=1

 Score =  175 bits (443), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 105/278 (37%), Positives = 146/278 (52%), Gaps = 37/278 (13%)

Query: 7   LPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKFLPSDYKEIISNSSSISASS 66
           LP +C+S I+S T+P+DA  L+     F S   SD VWEKF+P +Y+ +IS S +     
Sbjct: 39  LPEECVSIIVSFTSPQDACVLASVSKTFASAVKSDIVWEKFIPPEYESLISQSRAFKF-- 96

Query: 67  LMITSLSKKDLYFYLCHNPILINNHTTSFSLVQETGKKCYMVGARVLSIAWGDSPQYWNW 126
                LSKK+LYF LC   +LI++   S  + +   K+C M+ A  L+IAWG+SPQ W W
Sbjct: 97  -----LSKKELYFALCDKSVLIDDGKKSLWIEKANAKRCIMISAMNLAIAWGNSPQSWRW 151

Query: 127 LSLREFRFPEVVKLREVWWFEIIARIETRILSFKTNYAAYLVFKFVKSRQGFD------- 179
           +   + RF  V +L EV  FEI  RI +R++S KT Y+AY+V+K +    GF+       
Sbjct: 152 IPDPQARFETVAELLEVCLFEIRGRINSRVISPKTRYSAYIVYKKLNICYGFENVAVEVV 211

Query: 180 ------------ARPIEFDVYFEGSNNHKRRSALLDPPTNVSPQLSQDRGDGWTEIEMGD 227
                        R I FD   +     + R   L  P        + R DGW EI++G+
Sbjct: 212 VGVVGQDLEESCRRYICFDETMDEQFRRRDRGKNLVKP--------ERRKDGWMEIKIGE 263

Query: 228 FFNENG---DDGTVVCRLCEPGSVQKRGIITQGIELRP 262
           FFNE G   DD   +  L       KRG+I QGIE+RP
Sbjct: 264 FFNEGGLLNDDEIEMVALEAKQRHWKRGLIIQGIEIRP 301

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NPT8|PP2B1_ARATH F-box protein PP2-B1 OS=Arabidopsis thaliana GN=PP2B1 PE=1 SV=1

 Score =  174 bits (440), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 110/311 (35%), Positives = 158/311 (50%), Gaps = 66/311 (21%)

Query: 7   LPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKFLPSDYKEIISNSSSISASS 66
           LP  CIS +IS T+PRDA  ++    + KS A SD VWE FLPS+Y  ++  S++     
Sbjct: 35  LPEDCISKVISHTSPRDACVVASVSKSVKSAAQSDLVWEMFLPSEYSSLVLQSAN----- 89

Query: 67  LMITSLSKKDLYFYLCHNPILINNHTTSFSLVQETGKKCYMVGARVLSIAWGDSPQYWNW 126
                LSKK+++  L  N +L+ N   SF + + +GKKCYM+ A  L+I WGDSP YW W
Sbjct: 90  ----HLSKKEIFLSLADNSVLVENGKKSFWVEKASGKKCYMLSAMELTIIWGDSPAYWKW 145

Query: 127 LSLREFRFPEVVKLREVWWFEIIARIETRILSFKTNYAAYLVFKFVKSRQ-GFDARPIEF 185
           +++ E +F +V +LR V WFE+  +I   +LS  T+Y+ Y+VFK    R  GFD  P+E 
Sbjct: 146 ITVPESKFEKVAELRNVCWFEVRGKISCGMLSKGTHYSVYVVFKTANGRSYGFDLVPVEA 205

Query: 186 ------------DVYFEGSNNHKR---------------RSALLDPP------------- 205
                        VYFE  N   R               R+  +  P             
Sbjct: 206 GVGFVGKVATKKSVYFESGNADSRSATSHYSGISYAMVSRAFRMRRPWMQVQREEEEEVE 265

Query: 206 -------TNVSPQLSQDRGDGWTEIEMGDFFNEN---GDDGT--VVCRLCEPGSVQ-KRG 252
                    V P   ++R DGW+E+E+G F+  N   GDDG+  +   + E  +   K G
Sbjct: 266 GERERGMNVVGP---KERVDGWSEVELGKFYINNGGCGDDGSDEIEISIMETQNGNWKSG 322

Query: 253 IITQGIELRPK 263
           +I QGIE+RP+
Sbjct: 323 LIIQGIEIRPE 333

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVR0|PP2B6_ARATH Putative F-box protein PP2-B6 OS=Arabidopsis thaliana GN=PP2B6 PE=4 SV=1

 Score =  167 bits (423), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 100/269 (37%), Positives = 144/269 (53%), Gaps = 24/269 (8%)

Query: 7   LPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKFLPSDYKEIISNSSSISASS 66
           LP  CIS IIS T+PRD    +    +F      DS+WEKFLPS+Y+ +I      S   
Sbjct: 48  LPEDCISNIISFTSPRDVCVSASVSKSFAHAVQCDSIWEKFLPSEYESLIPPWRVFS--- 104

Query: 67  LMITSLSKKDLYFYLCHNPILINNHTTSFSLVQETGKKCYMVGARVLSIAWGDSPQYWNW 126
                 SKKDLYF LC++P+L+ +   SF L   +GKKC ++ A+ L I  G++P+YW W
Sbjct: 105 ------SKKDLYFTLCYDPVLVEDGKKSFWLETASGKKCVLLAAKELWITGGNNPEYWQW 158

Query: 127 LSLREFRFPEVVKLREVWWFEIIARIETRILSFKTNYAAYLVFKFVKSRQGFDARPIEFD 186
           + L E  F +V +L     F++   + T+ILS  T+Y+ Y+V+K    R G    PI+  
Sbjct: 159 IELCESSFEKVPELLNNRSFQMGGSMSTQILSLGTHYSVYIVYKIKDERHGLRDLPIQVG 218

Query: 187 VYFEGSNNHKRRSALLDPPTNVSPQ-------LSQDRGDGWTEIEMGDFFNENGDDG--- 236
           V F+G    K+     D  T+ + +        S+ RGDGW E E+GDFFN+ G  G   
Sbjct: 219 VGFKGQEMPKQF-ICFDESTDKTKEWPKKKLMKSKKRGDGWMEAEIGDFFNDGGLMGFDE 277

Query: 237 --TVVCRLCEPGSVQKRGIITQGIELRPK 263
               +  +  P    K G++ +GIE RPK
Sbjct: 278 VEVSIVDVTSPN--LKCGVMIEGIEFRPK 304

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FV02|SKIP3_ARATH F-box protein SKIP3 OS=Arabidopsis thaliana GN=SKIP3 PE=1 SV=2

 Score =  162 bits (410), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 99/276 (35%), Positives = 142/276 (51%), Gaps = 40/276 (14%)

Query: 7   LPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKFLPSDYKEIISNSSSISASS 66
           LP  CIS IIS T+P DA   +     F+S   SD VWEKFLP+DY+ +I+ S   S   
Sbjct: 27  LPEGCISNIISFTSPEDACVAAAVSKIFESAVKSDIVWEKFLPTDYESLITPSRVFS--- 83

Query: 67  LMITSLSKKDLYFYLCHNPILINNHTTSFSLVQETGKKCYMVGARVLSI-AWGDSPQYWN 125
                 SKK+LYF LC++P+LI +   S  L + +GK+C M+ A  +++ +  D  Q + 
Sbjct: 84  ------SKKELYFSLCNDPLLIEDGKMSLWLEKASGKRCIMLSATAMNLSSMADMSQRFL 137

Query: 126 WLSLREFRFPEVVKLREVWWFEIIARIETRILSFKTNYAAYLVFKFVKSRQGFDARPIE- 184
           W+   E RF  V  LRE + FE   R+ TR+LS +T Y+ Y+VFK   +  GF    IE 
Sbjct: 138 WIPCPESRFETVAALREAYRFEFNCRMNTRVLSLRTRYSVYIVFKKADNWCGFKGVSIEA 197

Query: 185 ---------------FDVYFEGSNNHKRRSALLDPPTNVSPQLSQDRGDGWTEIEMGDFF 229
                          FD +  G    ++R  +  P         + R DGW E E+G+F+
Sbjct: 198 VVGIVGEESFRSFICFDTH--GKGQARKRKVVAKP---------ELREDGWMETEIGEFY 246

Query: 230 NENG---DDGTVVCRLCEPGSVQKRGIITQGIELRP 262
           NE G    D   +  +    + QKRG++  GIE+RP
Sbjct: 247 NEGGLMSSDEVEISTVEGKYAQQKRGLVILGIEIRP 282

Arabidopsis thaliana (taxid: 3702)

>sp|O80494|P2B15_ARATH F-box protein PP2-B15 OS=Arabidopsis thaliana GN=PP2B15 PE=2 SV=2

 Score =  158 bits (399), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 107/287 (37%), Positives = 140/287 (48%), Gaps = 35/287 (12%)

Query: 5   FVLPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKFLPSDYKEIISNSSSISA 64
            +LP  C++ I+S TTP D    +     F+   DSD VWEKFLP+DY  +IS S+    
Sbjct: 1   MMLPEACVATILSFTTPADTISSAAVSSVFRVAGDSDFVWEKFLPTDYCHVISRSTD--- 57

Query: 65  SSLMITSLSKKDLYFYLCHNPILINNHTTSFSLVQETGKKCYMVGARVLSIAWGDSPQYW 124
               I S SKK+LY  LC + ILI+N    F + + +GK  Y++ +R LSI W D   YW
Sbjct: 58  -PHRIFS-SKKELYRCLCES-ILIDNGRKIFKIEKLSGKISYILSSRDLSITWSDQRHYW 114

Query: 125 NWLSLREFRFPEVVKLREVWWFEIIARIETRILSFKTNYAAYLVFKFVKSRQGFDARPIE 184
           +W    + RF E V+L    W EII +I+T  LS  TNY AYL+ K      G D  P E
Sbjct: 115 SWSPRSDSRFSEGVQLIMTDWLEIIGKIQTGALSPNTNYGAYLIMKVTSRAYGLDLVPAE 174

Query: 185 FDVYFEGSNNHKRRSALLDPPTNVSPQLS------------------------QDRGDGW 220
             +   G+   K +S  L    N   Q+                         + R DGW
Sbjct: 175 TSIKV-GNGEKKIKSTYLSCLDNKKQQMERVFYGQREQRMATHEVVRSHRREPEVRDDGW 233

Query: 221 TEIEMGDFFNENG---DDGTVVCRLCEPGSVQ-KRGIITQGIELRPK 263
            EIE+G+F   +G   DD  VV  L E    Q K GI   GIE+RPK
Sbjct: 234 MEIELGEFETGSGEGDDDKEVVMSLTEVKGYQLKGGIAIDGIEVRPK 280

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	266
118485882	267	unknown [Populus trichocarpa]	0.981	0.977	0.533	4e-70
449433185	267	PREDICTED: putative F-box protein PP2-B1	0.981	0.977	0.509	2e-65
449487520	268	PREDICTED: putative F-box protein PP2-B1	0.981	0.973	0.518	3e-65
224053426	243	f-box family protein [Populus trichocarp	0.894	0.979	0.513	2e-64
449432438	268	PREDICTED: putative F-box protein PP2-B1	0.981	0.973	0.511	3e-64
449518583	267	PREDICTED: putative F-box protein PP2-B1	0.981	0.977	0.483	4e-61
224089406	377	predicted protein [Populus trichocarpa]	0.951	0.671	0.450	2e-56
296088861	312	unnamed protein product [Vitis vinifera]	0.943	0.804	0.442	2e-55
357441235	274	F-box protein PP2-B1 [Medicago truncatul	0.958	0.930	0.468	1e-54
225470220	277	PREDICTED: F-box protein PP2-B10-like [V	0.951	0.913	0.438	5e-54

>gi|118485882|gb|ABK94787.1| unknown [Populus trichocarpa]

 Score =  270 bits (690), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 142/266 (53%), Positives = 184/266 (69%), Gaps = 5/266 (1%)

Query: 1   MDITFVLPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKFLPSDYKEIISNSS 60
           MD++ VLP +C+++IIS T+PRDA   +L    F+S ADSD+VW+ FLPSD+ EIIS+S 
Sbjct: 1   MDMSQVLPEECLAHIISFTSPRDACGSALVSRNFRSAADSDAVWKGFLPSDHVEIISSSP 60

Query: 61  SISASSLMITSLSKKDLYFYLCHNPILINNHTTSFSLVQETGKKCYMVGARVLSIAWGDS 120
           + S+S L  T+LSKK+LYF+LC+NPIL+NN   SF+L +  GKKCYM+GAR LSI WGD+
Sbjct: 61  ASSSSQL--TALSKKELYFHLCNNPILVNNGIMSFALEKHGGKKCYMIGARGLSITWGDT 118

Query: 121 PQYWNWLSL-REFRFPEVVKLREVWWFEIIARIETRILSFKTNYAAYLVFKFVKSRQGFD 179
           P YW W  L  + RF EV +LR VWW ++  RI+ +I S KT YAAYLVFK   S +GFD
Sbjct: 119 PDYWTWKPLPDQSRFSEVAELRYVWWLDVRGRIDAKIFSPKTTYAAYLVFKLTDSTRGFD 178

Query: 180 ARPIEFDVYFEGSNNHKRRSALLD-PPTNVSPQLSQDRGDGWTEIEMGDFFNENGDDGTV 238
            R +E  V FE S   ++    LD PP    P L ++R DGW EIEMG+FF +N DDG+V
Sbjct: 179 ERLVELSVNFEESVGEEKLHVFLDVPPDYDMPPLPRERSDGWMEIEMGEFFYDNEDDGSV 238

Query: 239 VCRLCEPGS-VQKRGIITQGIELRPK 263
           V  L E  +   K G+I +GIE RPK
Sbjct: 239 VAYLREVDNYTTKNGLIIEGIEFRPK 264

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433185|ref|XP_004134378.1| PREDICTED: putative F-box protein PP2-B12-like [Cucumis sativus]

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 137/269 (50%), Positives = 181/269 (67%), Gaps = 8/269 (2%)

Query: 1   MDITFVLPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKFLPSDYKEIISNSS 60
           MDI   LPA+CIS I++ T+P+DA R ++A PAF+S ADSD++W  FLPSDY++IIS +S
Sbjct: 1   MDIN-QLPAECISSILAFTSPKDACRSAVASPAFRSAADSDAIWTTFLPSDYRQIISQAS 59

Query: 61  SISASSLMITSLSKKDLYFYLCHNPILINNHTTSFSLVQETGKKCYMVGARVLSIAWGDS 120
           S S SS +  SLSKK LY  L  + + I +  +SF L +E+GKKCYM+GAR L I WG S
Sbjct: 60  SSSTSSFL-NSLSKKALYLRLSDHLLFIGSGNSSFVLEKESGKKCYMIGARDLEIVWGSS 118

Query: 121 PQYWNWLSLREFRFPEVVKLREVWWFEIIARIETRILSFKTNYAAYLVFKFVKS---RQG 177
           P YW W S+   RF EV +L+ VWW EI  +IE R LS KT YAAY VFKF +      G
Sbjct: 119 PAYWTWQSIPTSRFSEVAELQYVWWLEIKGKIEGRNLSPKTKYAAYFVFKFKEGDFQHDG 178

Query: 178 FDARPIEFDVYFEGS--NNHKRRSALLDPPTNVSPQLSQDRGDGWTEIEMGDFFNENGDD 235
           F  +P+  +VYFEG        +  LLDPP   SP + ++R DGW E+EMG+FFNE GDD
Sbjct: 179 FGTKPVSLEVYFEGEEVGEDGTKMVLLDPPEG-SPVVCKERSDGWMEVEMGEFFNELGDD 237

Query: 236 GTVVCRLCEPGSVQKRGIITQGIELRPKY 264
           G ++  L +   ++K G+I +G+E+RPKY
Sbjct: 238 GIIIFHLMQIDRLRKGGLIVEGVEIRPKY 266

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449487520|ref|XP_004157667.1| PREDICTED: putative F-box protein PP2-B12-like [Cucumis sativus]

 Score =  254 bits (649), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 140/270 (51%), Positives = 189/270 (70%), Gaps = 9/270 (3%)

Query: 1   MDITFVLPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKFLPSDYKEIISNSS 60
           MDI   LPA+C+S I++ T+P+DA R ++A PAF+S ADSD++W  FLPSDY++IIS +S
Sbjct: 1   MDIN-QLPAECLSSILAFTSPKDACRSAVASPAFRSAADSDALWITFLPSDYRQIISQAS 59

Query: 61  SISASSLMITSLSKKDLYFYLCHNPILINNHTTSFSLVQETGKKCYMVGARVLSIAWGDS 120
           S S SS +  SLSKK LYF L  + + I +  +SF L +E+GKKCYM+GAR L I WG+S
Sbjct: 60  SSSTSSFL-NSLSKKALYFRLSDHLLFIGSGNSSFVLEKESGKKCYMIGARDLDIIWGNS 118

Query: 121 PQYWNWLSLREFRFPEVVKLREVWWFEIIARIETRILSFKTNYAAYLVFKFVK---SRQG 177
           PQYW W S+   RF EV +L+ VWW EI  +IE R LS KT YAAY VFK V+   SR+G
Sbjct: 119 PQYWTWKSIPTSRFREVAELQVVWWLEIKGKIEARSLSPKTKYAAYFVFKLVEDRYSRRG 178

Query: 178 FDARPIEFDVYFEGSNNHK--RRSALLDPPTNVSPQLSQDRGDGWTEIEMGDFFNENGDD 235
           F  RP+  +V+FEG+   +  R+  +LDPP   S  + ++R DGW E+EMG+ FNE GDD
Sbjct: 179 FQIRPVSLEVHFEGAEVEEDGRKRVILDPPEG-SLVVCEERSDGWMEVEMGEIFNELGDD 237

Query: 236 GTVVCRLCEPGS-VQKRGIITQGIELRPKY 264
           GT++  L +  + + K G+I +GIE+RPKY
Sbjct: 238 GTIIFHLKQIDNFISKGGLIVEGIEIRPKY 267

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053426|ref|XP_002297813.1| f-box family protein [Populus trichocarpa] gi|222845071|gb|EEE82618.1| f-box family protein [Populus trichocarpa]

 Score =  251 bits (642), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 136/265 (51%), Positives = 174/265 (65%), Gaps = 27/265 (10%)

Query: 1   MDITFVLPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKFLPSDYKEIISNSS 60
           MD++ VLP +C+++IIS T+PRDA   +L    F+S ADSD+VW+ FLPSD+ EIIS+S 
Sbjct: 1   MDMSQVLPEECLAHIISFTSPRDACGSALVSRNFRSAADSDAVWKGFLPSDHVEIISSSP 60

Query: 61  SISASSLMITSLSKKDLYFYLCHNPILINNHTTSFSLVQETGKKCYMVGARVLSIAWGDS 120
           + S+S L  T+LSKK+LYF+LC+NPIL+NN   SF+L +  GKKCYM+GAR LSI WGD+
Sbjct: 61  ASSSSQL--TALSKKELYFHLCNNPILVNNGIMSFALEKHGGKKCYMIGARGLSITWGDT 118

Query: 121 PQYWNWLSL-REFRFPEVVKLREVWWFEIIARIETRILSFKTNYAAYLVFKFVKSRQGFD 179
           P YW W  L  + RF EV +LR VWW ++  RI+ +I S KT YAAYLVFK   S +GFD
Sbjct: 119 PDYWTWKPLPDQSRFSEVAELRYVWWLDVRGRIDAKIFSPKTTYAAYLVFKLTDSTRGFD 178

Query: 180 ARPIEFDVYFEGSNNHKRRSALLDPPTNVSPQLSQDRGDGWTEIEMGDFFNENGDDGTVV 239
            R +E  V FE S                       R DGW EIEMG+FF +N DDG+VV
Sbjct: 179 ERLVELSVNFEES-----------------------RSDGWMEIEMGEFFYDNEDDGSVV 215

Query: 240 CRLCEPGS-VQKRGIITQGIELRPK 263
             L E  +   K G+I +GIE RPK
Sbjct: 216 AYLREVDNYTTKNGLIIEGIEFRPK 240

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432438|ref|XP_004134006.1| PREDICTED: putative F-box protein PP2-B12-like [Cucumis sativus]

 Score =  251 bits (640), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 138/270 (51%), Positives = 187/270 (69%), Gaps = 9/270 (3%)

Query: 1   MDITFVLPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKFLPSDYKEIISNSS 60
           MDI   LPA+C+S I++ T+P+DA R ++  PAF+S ADSD++W  FLPSDY++IIS +S
Sbjct: 1   MDIN-QLPAECLSCILAFTSPKDACRSAVVSPAFRSAADSDALWTTFLPSDYRQIISQAS 59

Query: 61  SISASSLMITSLSKKDLYFYLCHNPILINNHTTSFSLVQETGKKCYMVGARVLSIAWGDS 120
           S S SS +  SLSKK LY  L  + + I +  +SF L +E+GKKCYM+GAR L I WG+S
Sbjct: 60  SSSTSSFL-NSLSKKALYLRLSDHLLFIGSGNSSFVLEKESGKKCYMIGARDLDIIWGNS 118

Query: 121 PQYWNWLSLREFRFPEVVKLREVWWFEIIARIETRILSFKTNYAAYLVFKFVK---SRQG 177
           PQYW W S+   RF EV +L+ VWW EI  +IE R LS KT YAAY VFK V+   SR+G
Sbjct: 119 PQYWTWKSIPTSRFREVAELQVVWWLEIKGKIEARSLSPKTKYAAYFVFKLVEDRYSRRG 178

Query: 178 FDARPIEFDVYFEGSNNHK--RRSALLDPPTNVSPQLSQDRGDGWTEIEMGDFFNENGDD 235
           F  RP+  +V+FEG+   +  R+  +LDPP   S  + ++R DGW E+EMG+ FNE GDD
Sbjct: 179 FQIRPVSLEVHFEGAEVEEDGRKRVILDPPEG-SLVVCEERSDGWMEVEMGEIFNELGDD 237

Query: 236 GTVVCRLCEPGS-VQKRGIITQGIELRPKY 264
           GT++  L +  + + K G+I +GIE+RPKY
Sbjct: 238 GTIIFHLKQIDNFISKGGLIVEGIEIRPKY 267

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518583|ref|XP_004166316.1| PREDICTED: putative F-box protein PP2-B12-like [Cucumis sativus]

 Score =  240 bits (613), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 130/269 (48%), Positives = 180/269 (66%), Gaps = 8/269 (2%)

Query: 1   MDITFVLPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKFLPSDYKEIISNSS 60
           MDI   LPA+C+S I++ T+P+DA R ++  PAF+S ADSD++W  FLPSDY++IIS +S
Sbjct: 1   MDIN-QLPAECLSCILAFTSPKDACRSAVVSPAFRSAADSDALWTTFLPSDYRQIISQAS 59

Query: 61  SISASSLMITSLSKKDLYFYLCHNPILINNHTTSFSLVQETGKKCYMVGARVLSIAWGDS 120
           S S SS +  SLSKK LY  L  + + I +  + F L + +GKKCYM+GAR L I WG S
Sbjct: 60  SSSTSSFL-NSLSKKALYLRLSDHLLFIGSGNSGFVLEKGSGKKCYMIGARDLEIVWGSS 118

Query: 121 PQYWNWLSLREFRFPEVVKLREVWWFEIIARIETRILSFKTNYAAYLVFKFVKS---RQG 177
           P+YW W S+   RF EV +L+ VWW EI  +IE R LS KT YAAY VFK V+    R  
Sbjct: 119 PEYWTWQSIPTSRFSEVAELQYVWWLEIKGKIEGRNLSPKTKYAAYFVFKLVEDNFCRHV 178

Query: 178 FDARPIEFDVYFEGS--NNHKRRSALLDPPTNVSPQLSQDRGDGWTEIEMGDFFNENGDD 235
           F+  P+  +V+FEG+     +R+  +LDP    S  +  +R DGW E+EMG+FFNE GDD
Sbjct: 179 FETTPVSLEVHFEGAEVEEDRRKRVILDPLEG-SSVVCVERSDGWMEVEMGEFFNECGDD 237

Query: 236 GTVVCRLCEPGSVQKRGIITQGIELRPKY 264
           G+++  L +   ++K G+I +G+E+RPKY
Sbjct: 238 GSIIFHLMQIDRLRKGGLIVEGVEIRPKY 266

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224089406|ref|XP_002308716.1| predicted protein [Populus trichocarpa] gi|222854692|gb|EEE92239.1| predicted protein [Populus trichocarpa]

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 118/262 (45%), Positives = 158/262 (60%), Gaps = 9/262 (3%)

Query: 7   LPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKFLPSDYKEIISNSSSISASS 66
           LP  CI+  +S TTP+D  RLS+  P F   A SD VWE+FLP D + I+S S     S 
Sbjct: 12  LPEGCIATALSFTTPQDVGRLSVVSPMFMLAAVSDVVWERFLPRDLESILSTSPD--GSR 69

Query: 67  LMITSLSKKDLYFYLCHNPILINNHTTSFSLVQETGKKCYMVGARVLSIAWGDSPQYWNW 126
           LM ++ SKK+LYF LC NP+L+ N   SFSL +++GKKCY + AR L I WGDSP+YW W
Sbjct: 70  LMASAASKKELYFSLCENPVLVGNGRKSFSLEKKSGKKCYRLSARDLLITWGDSPEYWTW 129

Query: 127 LSLREFRFPEVVKLREVWWFEIIARIETRILSFKTNYAAYLVFKFVKSRQ--GFDARPIE 184
            S    RFPEV +L  V W EI  +I T +LS  T Y AYLV K        G D +P+ 
Sbjct: 130 NSDPTSRFPEVAELISVCWLEISGKINTSMLSPATLYTAYLVLKLSIDIHNYGLDDQPVA 189

Query: 185 FDVYFEGSNNHKRRSALLDPPTNVSPQLSQDRGDGWTEIEMGDFFNENGDDGTVVCRLCE 244
             +  +G  ++ R  +      +   +  Q+RGDGW EIE+G+FF + G DG +  R+ +
Sbjct: 190 VAMKLDGEESYTRTVSW-----SAERRRGQERGDGWLEIELGEFFTKEGKDGELGIRVFD 244

Query: 245 PGSVQKRGIITQGIELRPKYGK 266
             +  KRG+I +GIE+RPK GK
Sbjct: 245 GTTHWKRGLIVEGIEIRPKQGK 266

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088861|emb|CBI38325.3| unnamed protein product [Vitis vinifera]

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 119/269 (44%), Positives = 157/269 (58%), Gaps = 18/269 (6%)

Query: 7   LPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKFLPSDYKEIISNSSSISASS 66
           LP +C++ IIS T+P DASR+S+     +  ADSD+VWE FLP D++ II+ ++  S + 
Sbjct: 47  LPLECVTEIISRTSPPDASRMSVVSTDLRFAADSDAVWEGFLPKDFQSIIAGAAGSSRAE 106

Query: 67  LMITSLSKKDLYFYLCHNPILINNHTTSFSLVQETGKKCYMVGARVLSIAWGDSPQYWNW 126
           +     SKK+LY  L   PILI     SFS+ + +GKKCYM+ AR L+I WGD+P YW W
Sbjct: 107 VQ----SKKELYLRLSDEPILIEGGLKSFSIEKRSGKKCYMIAARALTIEWGDTPMYWKW 162

Query: 127 LSLREFRFPEVVKLREVWWFEIIARIETRILSFKTNYAAYLVFKFVKSRQGFDARPIEF- 185
           +SL + RF EV +L  V WFEI  RI T +L  KTNYAAYLVF       GF+  P+E  
Sbjct: 163 ISLPQSRFKEVAELISVCWFEIRGRINTCLLCLKTNYAAYLVFNSTTETYGFEYHPVEVS 222

Query: 186 -----------DVYFEGSNNHKRRSALLDPPTNVSPQLSQDRGDGWTEIEMGDFFNENGD 234
                       VY   S    RR  ++  P   + Q  + R DGW EIE+G+FFNE GD
Sbjct: 223 IGIIGGRISTQSVYLNPSKTQTRRFPVV--PRRGNCQHPKKREDGWLEIELGEFFNEGGD 280

Query: 235 DGTVVCRLCEPGSVQKRGIITQGIELRPK 263
           +   +  L       K G+I QGIE+RPK
Sbjct: 281 EELEMSVLEVKAGNWKCGLIIQGIEIRPK 309

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357441235|ref|XP_003590895.1| F-box protein PP2-B1 [Medicago truncatula] gi|355479943|gb|AES61146.1| F-box protein PP2-B1 [Medicago truncatula]

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 125/267 (46%), Positives = 164/267 (61%), Gaps = 12/267 (4%)

Query: 6   VLPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKFLPSDYKEIISNSSSISAS 65
            LP  CI+ I+S TTP D+ RLSL   +F S A+SD VW++FLPSD   I+S+S S  AS
Sbjct: 10  ALPEGCIAKILSHTTPVDSCRLSLVSNSFCSAAESDIVWDRFLPSDLISIVSDSQS--AS 67

Query: 66  SLMITSLSKKDLYFYLCHNPILINNHTTSFSLVQETGKKCYMVGARVLSIAWGDSPQYWN 125
           SL  TS SKK LY  L  +PILINN  TSF L +++GKK YM+GAR LSIAWGD+P YW+
Sbjct: 68  SLFTTSPSKKSLYLTLSDHPILINNGKTSFQLEKQSGKKVYMLGARDLSIAWGDTPCYWD 127

Query: 126 WLSLREFRFPEVVKLREVWWFEIIARIETRILSFKTNYAAYLVFKFVKSRQGFDARPIEF 185
           W+ L E RF EV +LR V WFEI   I  R+LS  + Y A+LVFK + + + F+  P + 
Sbjct: 128 WIILPESRFQEVARLRTVCWFEISGTINKRVLSSDSQYVAFLVFKMINAYR-FEDLPTKL 186

Query: 186 DVYFEGSN-NHKRRSALLDPPTNVSPQLSQDRG--------DGWTEIEMGDFFNENGDDG 236
            V   G       ++  L+P  +   +  + +G        DG+ EIEMG+FFN   +D 
Sbjct: 187 TVGVLGDQVGLSTKNVWLNPYYDDRERNDEFQGLERPKVRSDGFLEIEMGEFFNSGLEDE 246

Query: 237 TVVCRLCEPGSVQKRGIITQGIELRPK 263
            V  R+ E G   K G I +GIE+RPK
Sbjct: 247 VVEMRVLENGGQHKGGFILEGIEIRPK 273

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470220|ref|XP_002270580.1| PREDICTED: F-box protein PP2-B10-like [Vitis vinifera]

 Score =  217 bits (552), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 114/260 (43%), Positives = 164/260 (63%), Gaps = 7/260 (2%)

Query: 6   VLPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKFLPSDYKEIISNSSSISAS 65
            LP  CI+ I++ T+ RDA R+S   P F S A+SD++WE FLP+DY+EII  SS  SA 
Sbjct: 22  ALPEDCIAGILARTSIRDACRMSTVSPEFLSAAESDALWETFLPADYREIIGRSSESSAR 81

Query: 66  SLMITSLSKKDLYFYLCHNPILINNHTTSFSLVQETGKKCYMVGARVLSIAWGDSPQYWN 125
                  SKK+L+F LC++P+LI+    SF L +E+GKKCYM+ AR L+I W ++P+YW 
Sbjct: 82  QDF---SSKKELFFRLCNSPLLIDGGKKSFWLDKESGKKCYMIAARELTIIWSETPRYWT 138

Query: 126 WLSLREFRFPEVVKLREVWWFEIIARIETRILSFKTNYAAYLVFKFVKSRQGFDARPIEF 185
           W+S  + RF EV  L+ VWWF I  ++ T +LS  TNYAAYL+F+      GF+  PIE 
Sbjct: 139 WISPPQSRFTEVANLKIVWWFVIKGKMNTCMLSPCTNYAAYLIFQRNDIFDGFEDNPIES 198

Query: 186 DVYFEGSNNHKRRSALLDPPTNVSPQLSQDRGDGWTEIEMGDFFNENGDDGTVVCRLCEP 245
            +   G    K +   LDP  ++SP  +  R DGW E+E+G+FFNE  +   +   + E 
Sbjct: 199 SIGVTGGETAK-KVIYLDPEHDISPNPT--RIDGWYEVELGEFFNEGRESVELEMSIMEV 255

Query: 246 GS-VQKRGIITQGIELRPKY 264
            + + K G++ +GIE+RPK+
Sbjct: 256 NTFIGKSGLLIEGIEIRPKF 275

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	266
TAIR|locus:2056231	272	PP2-B10 "phloem protein 2-B10"	0.917	0.897	0.419	4.2e-47
TAIR|locus:2016349	257	PP2-B11 "phloem protein 2-B11"	0.924	0.957	0.412	1.3e-45
TAIR|locus:2056181	320	MEE66 "AT2G02240" [Arabidopsis	0.924	0.768	0.4	3.1e-44
TAIR|locus:2056191	336	PP2-B1 "phloem protein 2-B1" [	0.661	0.523	0.413	3.2e-43
TAIR|locus:2056196	310	PP2-B2 "phloem protein 2-B2" [	0.921	0.790	0.396	3.5e-43
TAIR|locus:2153954	251	PP2-B12 "phloem protein 2-B12"	0.906	0.960	0.393	3.2e-42
TAIR|locus:2056201	305	PP2-B8 "phloem protein 2-B8" [	0.932	0.813	0.372	9.9e-39
TAIR|locus:2056166	307	PP2-B6 "phloem protein 2-B6" [	0.928	0.804	0.367	3.4e-38
TAIR|locus:505006110	289	PP2-B15 "phloem protein 2-B15"	0.759	0.698	0.358	7.3e-38
TAIR|locus:2011791	282	PP2-B14 "phloem protein 2-B14"	0.703	0.663	0.358	3.5e-36

TAIR|locus:2056231 PP2-B10 "phloem protein 2-B10" [Arabidopsis thaliana (taxid:3702)]

 Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
 Identities = 110/262 (41%), Positives = 147/262 (56%)

Query:     8 PAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKFLPSDYKEXXXXXXXXXXXXX 67
             P  CISYIIS T PRDA   +     F+ST  SD +WEKFLP+DY+              
Sbjct:    18 PEDCISYIISFTNPRDACVAATVSKTFESTVKSDIIWEKFLPADYESLIPPSRVFSS--- 74

Query:    68 XXXXXXKKDLYFYLCHNPILINNHTTSFSLVQETGKKCYMVGARVLSIAWGDSPQYWNWL 127
                   KK+LYF LC++P+L ++   S  L + +GK+C M+ A  LSI WGD+PQYW W+
Sbjct:    75 ------KKELYFSLCNDPVLFDDDKKSVWLEKASGKRCLMLSAMNLSIIWGDNPQYWQWI 128

Query:   128 SLREFRFPEVVKLREVWWFEIIARIETRILSFKTNYAAYLVFKFVKSRQGFDARPIEFDV 187
              + E RF +V KLR+V WFEI  R  TR+LS +T Y+AY+VFK V    GF    IE  V
Sbjct:   129 PIPESRFEKVAKLRDVCWFEIRGRTNTRVLSPRTRYSAYIVFKGVDKCYGFQNVAIEAAV 188

Query:   188 YFEGSNNHKR----RSALLDPPTNVSPQLSQDRGDGWTEIEMGDFFNENG--DDGTVVCR 241
                G    +R      A+     NV     + R DGW EIE+G+FFN+ G  D+  +   
Sbjct:   189 GVVGQEPSRRLICFSEAIRRGRRNVVKP--KQREDGWMEIELGEFFNDGGIMDNDEIEMS 246

Query:   242 LCEPGSVQKR-GIITQGIELRP 262
               E   + ++ G+I QGIE+RP
Sbjct:   247 ALETKQLNRKCGLIIQGIEIRP 268

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2016349 PP2-B11 "phloem protein 2-B11" [Arabidopsis thaliana (taxid:3702)]

 Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
 Identities = 108/262 (41%), Positives = 143/262 (54%)

Query:     7 LPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKFLPSDYKEXXXXXXXXXXXX 66
             LP  CI+ I+SLTTP D  RLS     F+S A SD VW  FLP+D+              
Sbjct:     4 LPEDCIAKILSLTTPLDVCRLSAVSSIFRSAAGSDDVWNHFLPADFP---------AGFA 54

Query:    67 XXXXXXXKKDLYFYLCHNPILINNHTTSFSLVQETGKKCYMVGARVLSIAWGDSPQYWNW 126
                    +K L+F L  NP+LIN    SFSL +++G KCYM+ AR L+I WG   +YW+W
Sbjct:    55 APAGLPTRKQLFFSLVDNPLLINGTLLSFSLERKSGNKCYMMAARALNIVWGHEQRYWHW 114

Query:   127 LSLREFRFPEVVKLREVWWFEIIARIETRILSFKTNYAAYLVFKFVKSRQGFDARPIEFD 186
             +SL   RF EV +L  VWW EI  +I   +LS  T YAAY VFK+  S  GF  +P+E  
Sbjct:   115 ISLPNTRFGEVAELIMVWWLEITGKINITLLSDDTLYAAYFVFKWNHSPYGF-RQPVETS 173

Query:   187 VYF---EGSNNHKRRS--ALLDPPTNVSPQLSQDRGDGWTEIEMGDFFNENGDDGTVVCR 241
             +     E ++N  + S  +L+        Q    R DGW E+E+G FF   GD G +   
Sbjct:   174 LVLADTESTDNVVQPSMISLMQDSGGEEGQSPVLRRDGWYEVELGQFFKRRGDLGEIEMS 233

Query:   242 LCEP-GSVQKRGIITQGIELRP 262
             L E  G  +K+G+I  GIE+RP
Sbjct:   234 LKETKGPYEKKGLIVYGIEIRP 255

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056181 MEE66 "AT2G02240" [Arabidopsis thaliana (taxid:3702)]

 Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
 Identities = 106/265 (40%), Positives = 144/265 (54%)

Query:     6 VLPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKFLPSDYKEXXXXXXXXXXX 65
             VLP  CIS IIS T+PRDA   +     F+S   SD VW+KFLP +Y+            
Sbjct:    63 VLPEDCISNIISFTSPRDACVAASVSKTFESAVSSDCVWDKFLPPEYESLVSRSRVFAS- 121

Query:    66 XXXXXXXXKKDLYFYLCHNPILINNHTTSFSLVQETGKKCYMVGARVLSIAWGDSPQYWN 125
                     KK+LYF LCHNP+LI +   SF L + +GK+C M+ ++ L I WG SP+YW 
Sbjct:   122 --------KKELYFALCHNPVLIEDGKKSFWLEKASGKRCIMLSSKELWITWGSSPEYWQ 173

Query:   126 WLSLREFRFPEVVKLREVWWFEIIARIETRILSFKTNYAAYLVFKFVKSR-QGFDARPIE 184
             W+S+ E RF ++ +L +V WFEI  +   R+LS  T Y+AY+VFK  K R  G    P+E
Sbjct:   174 WISIPESRFNKIAELLDVCWFEIRGKTSARVLSPGTRYSAYIVFK-TKDRCPGLGHLPVE 232

Query:   185 FDVYFEGSNNHKRRSALLDPPTNVSPQLSQD------RGDGWTEIEMGDFFNENGDDGTV 238
               +   G  + KR    + P      + ++D      R DGW E E+G+FFNE   D  +
Sbjct:   233 VGLGLVGQESSKRFIYFIGPRDRRGRRETRDVTKPDQREDGWMEAELGEFFNEERCD-EI 291

Query:   239 VCRLCEPGSVQ-KRGIITQGIELRP 262
                + E  S   K G+I QGIE RP
Sbjct:   292 EFSVIEIKSPSWKSGLIIQGIEFRP 316

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

TAIR|locus:2056191 PP2-B1 "phloem protein 2-B1" [Arabidopsis thaliana (taxid:3702)]

 Score = 370 (135.3 bits), Expect = 3.2e-43, Sum P(2) = 3.2e-43
 Identities = 77/186 (41%), Positives = 106/186 (56%)

Query:     7 LPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKFLPSDYKEXXXXXXXXXXXX 66
             LP  CIS +IS T+PRDA  ++    + KS A SD VWE FLPS+Y              
Sbjct:    35 LPEDCISKVISHTSPRDACVVASVSKSVKSAAQSDLVWEMFLPSEYSSLVLQSANHLS-- 92

Query:    67 XXXXXXXKKDLYFYLCHNPILINNHTTSFSLVQETGKKCYMVGARVLSIAWGDSPQYWNW 126
                    KK+++  L  N +L+ N   SF + + +GKKCYM+ A  L+I WGDSP YW W
Sbjct:    93 -------KKEIFLSLADNSVLVENGKKSFWVEKASGKKCYMLSAMELTIIWGDSPAYWKW 145

Query:   127 LSLREFRFPEVVKLREVWWFEIIARIETRILSFKTNYAAYLVFKFVKSRQ-GFDARPIEF 185
             +++ E +F +V +LR V WFE+  +I   +LS  T+Y+ Y+VFK    R  GFD  P+E 
Sbjct:   146 ITVPESKFEKVAELRNVCWFEVRGKISCGMLSKGTHYSVYVVFKTANGRSYGFDLVPVEA 205

Query:   186 DVYFEG 191
              V F G
Sbjct:   206 GVGFVG 211

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056196 PP2-B2 "phloem protein 2-B2" [Arabidopsis thaliana (taxid:3702)]

 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 105/265 (39%), Positives = 141/265 (53%)

Query:     7 LPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKFLPSDYKEXXXXXXXXXXXX 66
             LP  CIS IIS T+PRDA   +     F+S  +SDSVW+KFLPSDY              
Sbjct:    50 LPEDCISNIISFTSPRDACVAASVSKTFESAVNSDSVWDKFLPSDYSSLVPPSRVFSS-- 107

Query:    67 XXXXXXXKKDLYFYLCHNPILINNHTTSFSLVQETGKKCYMVGARV-LSIAWGDSPQYWN 125
                    KK+LYF +C NP+L+ +   SF L +E GKKC+M+  +  + I W  +PQYW 
Sbjct:   108 -------KKELYFAICDNPVLVEDGGKSFWLEKENGKKCFMLSPKKSMWITWVSTPQYWR 160

Query:   126 WLSLREFRFPEVVKLREVWWFEIIARIETRILSFKTNYAAYLVFKFVKSRQGFDARPIEF 185
             W+S+ E RF EV +L  V WFE+   + T+ LS  T Y+AY+VFK           P+E 
Sbjct:   161 WISIPEARFEEVPELLNVCWFEVRGGMNTKELSPGTRYSAYIVFKTKNGCPNLGDVPVEA 220

Query:   186 DVYFEGSNNHKRRSALLDPPTNVSPQLSQD------RGDGWTEIEMGDFFNENGDD--GT 237
              V   G  + +R    + P      + ++D      R DGW E E+G FFNE+G D   T
Sbjct:   221 TVGLVGQESSQRHIYFVGPSDQRRDRETRDVTRPTKRKDGWMEAELGQFFNESGCDVVDT 280

Query:   238 VVCRLCEPGSVQKRGIITQGIELRP 262
              +  +  P    KRG+I QGIE RP
Sbjct:   281 SILEIKTP--YWKRGLIIQGIEFRP 303

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2153954 PP2-B12 "phloem protein 2-B12" [Arabidopsis thaliana (taxid:3702)]

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 102/259 (39%), Positives = 142/259 (54%)

Query:     7 LPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKFLPSDYKEXXXXXXXXXXXX 66
             LP +CI+ +IS T+P DA R+S      +S ADS++ WE+FLPSDY+             
Sbjct:     6 LPEECIATMISFTSPFDACRISAVSKLLRSAADSNTTWERFLPSDYR---------MYID 56

Query:    67 XXXXXXXKKDLYFYLCHNPILINNHTTSFSLVQETGKKCYMVGARVLSIAWGDSPQYWNW 126
                     K L+   C +P+LI +  TSF + + +GKKC+M+ AR L I W DSP++W W
Sbjct:    57 NSLSRFSNKQLFLRFCESPLLIEDGRTSFWMEKRSGKKCWMLSARKLDIVWVDSPEFWIW 116

Query:   127 LSLREFRFPEVVKLREVWWFEIIARIETRILSFKTNYAAYLVFKFVKSRQ-GFDARPIEF 185
             +S+ + RF EV  L  V WFEI  +I T +LS  TNY+AYLVFK  +    GF++ P+E 
Sbjct:   117 VSIPDSRFEEVAGLLMVCWFEIRGKISTSLLSKATNYSAYLVFKEQEMGSFGFESLPLEV 176

Query:   186 DVYFEGSNNHKRRSALLDPPTNVSPQLSQDRGDGWTEIEMGDFFNENGDDGTVVCRLCEP 245
                   +  +  R   L   T  S      R DGW EIE+G+++    DD  +   + E 
Sbjct:   177 SFRSTRTEVYNNRRVFLKSGTQES------REDGWLEIELGEYY-VGFDDEEIEMSVLET 229

Query:   246 GSVQ-KRGIITQGIELRPK 263
                  K GII QGIE+RPK
Sbjct:   230 REGGWKGGIIVQGIEIRPK 248

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056201 PP2-B8 "phloem protein 2-B8" [Arabidopsis thaliana (taxid:3702)]

 Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
 Identities = 101/271 (37%), Positives = 143/271 (52%)

Query:     7 LPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKFLPSDYKEXXXXXXXXXXXX 66
             LP +C+S I+S T+P+DA  L+     F S   SD VWEKF+P +Y+             
Sbjct:    39 LPEECVSIIVSFTSPQDACVLASVSKTFASAVKSDIVWEKFIPPEYESLISQSRAFKFLS 98

Query:    67 XXXXXXXKKDLYFYLCHNPILINNHTTSFSLVQETGKKCYMVGARVLSIAWGDSPQYWNW 126
                    KK+LYF LC   +LI++   S  + +   K+C M+ A  L+IAWG+SPQ W W
Sbjct:    99 -------KKELYFALCDKSVLIDDGKKSLWIEKANAKRCIMISAMNLAIAWGNSPQSWRW 151

Query:   127 LSLREFRFPEVVKLREVWWFEIIARIETRILSFKTNYAAYLVFKFVKSRQGFDARPIEFD 186
             +   + RF  V +L EV  FEI  RI +R++S KT Y+AY+V+K +    GF+   +E  
Sbjct:   152 IPDPQARFETVAELLEVCLFEIRGRINSRVISPKTRYSAYIVYKKLNICYGFENVAVEVV 211

Query:   187 VYFEGSNNHK--RRSALLDPPTNVSPQLSQDRG----------DGWTEIEMGDFFNENG- 233
             V   G +  +  RR    D   +   +  +DRG          DGW EI++G+FFNE G 
Sbjct:   212 VGVVGQDLEESCRRYICFDETMDEQFR-RRDRGKNLVKPERRKDGWMEIKIGEFFNEGGL 270

Query:   234 --DDGTVVCRLCEPGSVQKRGIITQGIELRP 262
               DD   +  L       KRG+I QGIE+RP
Sbjct:   271 LNDDEIEMVALEAKQRHWKRGLIIQGIEIRP 301

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056166 PP2-B6 "phloem protein 2-B6" [Arabidopsis thaliana (taxid:3702)]

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 98/267 (36%), Positives = 141/267 (52%)

Query:     7 LPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKFLPSDYKEXXXXXXXXXXXX 66
             LP  CIS IIS T+PRD    +    +F      DS+WEKFLPS+Y+             
Sbjct:    48 LPEDCISNIISFTSPRDVCVSASVSKSFAHAVQCDSIWEKFLPSEYESLIPPWRVFSS-- 105

Query:    67 XXXXXXXKKDLYFYLCHNPILINNHTTSFSLVQETGKKCYMVGARVLSIAWGDSPQYWNW 126
                    KKDLYF LC++P+L+ +   SF L   +GKKC ++ A+ L I  G++P+YW W
Sbjct:   106 -------KKDLYFTLCYDPVLVEDGKKSFWLETASGKKCVLLAAKELWITGGNNPEYWQW 158

Query:   127 LSLREFRFPEVVKLREVWWFEIIARIETRILSFKTNYAAYLVFKFVKSRQGFDARPIEFD 186
             + L E  F +V +L     F++   + T+ILS  T+Y+ Y+V+K    R G    PI+  
Sbjct:   159 IELCESSFEKVPELLNNRSFQMGGSMSTQILSLGTHYSVYIVYKIKDERHGLRDLPIQVG 218

Query:   187 VYFEGSNNHKRRSALLDPPTNVSPQL-------SQDRGDGWTEIEMGDFFNENGDDG--T 237
             V F+G    K+     D  T+ + +        S+ RGDGW E E+GDFFN+ G  G   
Sbjct:   219 VGFKGQEMPKQ-FICFDESTDKTKEWPKKKLMKSKKRGDGWMEAEIGDFFNDGGLMGFDE 277

Query:   238 VVCRLCEPGSVQ-KRGIITQGIELRPK 263
             V   + +  S   K G++ +GIE RPK
Sbjct:   278 VEVSIVDVTSPNLKCGVMIEGIEFRPK 304

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

GO:0052542 "defense response by callose deposition" evidence=RCA

TAIR|locus:505006110 PP2-B15 "phloem protein 2-B15" [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 7.3e-38, Sum P(2) = 7.3e-38
 Identities = 75/209 (35%), Positives = 102/209 (48%)

Query:     6 VLPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKFLPSDYKEXXXXXXXXXXX 65
             +LP  C++ I+S TTP D    +     F+   DSD VWEKFLP+DY             
Sbjct:     2 MLPEACVATILSFTTPADTISSAAVSSVFRVAGDSDFVWEKFLPTDYCHVISRSTDPHRI 61

Query:    66 XXXXXXXXKKDLYFYLCHNPILINNHTTSFSLVQETGKKCYMVGARVLSIAWGDSPQYWN 125
                     KK+LY  LC + ILI+N    F + + +GK  Y++ +R LSI W D   YW+
Sbjct:    62 FSS-----KKELYRCLCES-ILIDNGRKIFKIEKLSGKISYILSSRDLSITWSDQRHYWS 115

Query:   126 WLSLREFRFPEVVKLREVWWFEIIARIETRILSFKTNYAAYLVFKFVKSRQGFDARPIEF 185
             W    + RF E V+L    W EII +I+T  LS  TNY AYL+ K      G D  P E 
Sbjct:   116 WSPRSDSRFSEGVQLIMTDWLEIIGKIQTGALSPNTNYGAYLIMKVTSRAYGLDLVPAET 175

Query:   186 DVYFEGSNNHKRRSALLDPPTNVSPQLSQ 214
              +   G+   K +S  L    N   Q+ +
Sbjct:   176 SIKV-GNGEKKIKSTYLSCLDNKKQQMER 203

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2011791 PP2-B14 "phloem protein 2-B14" [Arabidopsis thaliana (taxid:3702)]

 Score = 296 (109.3 bits), Expect = 3.5e-36, Sum P(2) = 3.5e-36
 Identities = 70/195 (35%), Positives = 99/195 (50%)

Query:     6 VLPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKFLPSDYKEXXXXXXXXXXX 65
             +LP  CI+ I++ T+P DA   S     F+   DSD VWEKFLPSDYK            
Sbjct:     3 MLPEACIANILAFTSPADAFSSSEVSSVFRLAGDSDFVWEKFLPSDYKSLISQSTDHHWN 62

Query:    66 XXXXXXXXKKDLYFYLCHNPILINNHTTSFSLVQETGKKCYMVGARVLSIAWGDSPQYWN 125
                     KK++Y  LC + +LI+N    F + + +GK  Y++ AR +SI   D   YW+
Sbjct:    63 ISS-----KKEIYRCLCDS-LLIDNARKLFKINKFSGKISYVLSARDISITHSDHASYWS 116

Query:   126 WLSLREFRFPEVVKLREVWWFEIIARIETRILSFKTNYAAYLVFKFVKSRQGFDARPIEF 185
             W ++ + RF E  +L      EI  +I+TR+LS  T Y AYL+ K  K   G D  P E 
Sbjct:   117 WSNVSDSRFSESAELIITDRLEIEGKIQTRVLSANTRYGAYLIVKVTKGAYGLDLVPAET 176

Query:   186 DVYFEGSNNHKRRSA 200
              +  +  N    +SA
Sbjct:   177 SI--KSKNGQISKSA 189

GO:0005634 "nucleus" evidence=ISM;IPI

GO:0030246 "carbohydrate binding" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZVQ6	P2B10_ARATH	No assigned EC number	0.4334	0.9210	0.9007	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	266
pfam14299	154	pfam14299, PP2, Phloem protein 2	8e-63

>gnl|CDD|222661 pfam14299, PP2, Phloem protein 2

 Score =  193 bits (494), Expect = 8e-63
 Identities = 79/163 (48%), Positives = 98/163 (60%), Gaps = 10/163 (6%)

Query: 102 GKKCYMVGARVLSIAWGDSPQYWNWLSLREFRFPEVVKLREVWWFEIIARIETRILSFKT 161
           GKKCYM+ AR LSI WGD P+YW W+ L E RF EV +L +V W EI  +I TR+LS  T
Sbjct: 1   GKKCYMLSARALSITWGDDPRYWRWIPLPESRFSEVAELLDVCWLEIRGKINTRMLSPGT 60

Query: 162 NYAAYLVFKFVKSRQGFDARPIEFDVYFEGSNNHKRRSALLDPPTNVSPQLSQDRGDGWT 221
            Y+AYLVFK      G+D +P+EF V     +  K R             L + RGDGW 
Sbjct: 61  TYSAYLVFKLADRAYGWDEKPVEFSV--SVPDGQKSRQ-------ERYVCLPEKRGDGWM 111

Query: 222 EIEMGDFFNENGDDGTVVCRLCE-PGSVQKRGIITQGIELRPK 263
           EIE+G+FFNE G+DG V   + E  G   K G+I  GIE+RPK
Sbjct: 112 EIEVGEFFNEGGEDGEVEFSMREVDGGHWKGGLIVDGIEIRPK 154

Phloem protein 2 (PP2) is one of the most abundant and enigmatic proteins in the phloem sap. PP2 is translocated in the assimilate stream where its lectin activity or RNA-binding properties can exert effects over long distances. Length = 154

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	266
PF14299	154	PP2: Phloem protein 2	100.0
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.64
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.32
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.3
PF06881	109	Elongin_A: RNA polymerase II transcription factor	91.39
KOG2997	366	consensus F-box protein FBX9 [General function pre	87.97
PF02018	131	CBM_4_9: Carbohydrate binding domain; InterPro: IP	82.23
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	81.08
KOG4408	386	consensus Putative Mg2+ and Co2+ transporter CorD	80.47

>PF14299 PP2: Phloem protein 2

Probab=100.00  E-value=5.3e-66  Score=436.26  Aligned_cols=152  Identities=50%  Similarity=0.972  Sum_probs=143.7

Q ss_pred             CCeeEEeeccceeeeeCCCCCceeEeecCCcccccceEEeeeeEEEEEEEEeccccCCCCeEEEEEEEEEcCCcCCCCCc
Q 024543          102 GKKCYMVGARVLSIAWGDSPQYWNWLSLREFRFPEVVKLREVWWFEIIARIETRILSFKTNYAAYLVFKFVKSRQGFDAR  181 (266)
Q Consensus       102 G~kCymLsAR~L~ItWgd~~~YW~W~~~~~SrF~EVAeL~~VcWLeI~G~i~~~~LSp~t~Y~ay~v~kl~d~~~Gw~~~  181 (266)
                      |++|||||||+|+|+|||||+||+|+++|+|||.|||||++||||||+|+|++++|||+|+|+||||||+++++|||+..
T Consensus         1 G~~cymlsaR~L~I~Wg~~~~yW~w~~~~~srf~evAeL~~V~WLeI~G~i~~~~Lsp~t~Y~vy~v~kl~~~~~Gw~~~   80 (154)
T PF14299_consen    1 GKKCYMLSARALSITWGDDPRYWKWIPLPDSRFSEVAELLQVCWLEIRGKINTRMLSPGTTYAVYFVFKLKDDAYGWDSP   80 (154)
T ss_pred             CCEEEEEEhhhCEEecCCCCcceeeccCCcccceeeeEEEEEEEEEEEEEEEceEcCCCCEEEEEEEEEecCCCCCCCcC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CEEEEEEEcCCccc-eeEEEEeCCCCCCCCCCccccCCCeEEEEceeEEecCCCccEEEEEEEEe-cCcccccEEEEEEE
Q 024543          182 PIEFDVYFEGSNNH-KRRSALLDPPTNVSPQLSQDRGDGWTEIEMGDFFNENGDDGTVVCRLCEP-GSVQKRGIITQGIE  259 (266)
Q Consensus       182 pv~~~v~~~g~~~~-~~~~v~L~~~~~~~~~~p~~r~dgW~Eie~GeF~~~~~~~~ev~fsl~e~-~~~wK~GLiv~GIe  259 (266)
                      ||+++|+++++... +.+.+++          |++|+|||||||+|||+++++++++|+|+|+|+ +++||+||||+|||
T Consensus        81 pv~~~v~~~~~~~~~~~~~~~~----------~~~r~dgW~Eie~GeF~~~~~~~~ev~f~~~E~~~~~wK~GLiv~Gie  150 (154)
T PF14299_consen   81 PVEFSVKVPDGEKYEQERKVCL----------PKERGDGWMEIELGEFFNEGGDDGEVEFSMYEVDSGHWKGGLIVEGIE  150 (154)
T ss_pred             CEEEEEEeCCCccccceeeEEc----------CCCCCCCEEEEEcceEEecCCCCcEEEEEEEEecCCcccCeEEEEEEE
Confidence            99999999876642 3456665          678899999999999999988999999999999 89999999999999


Q ss_pred             EEec
Q 024543          260 LRPK  263 (266)
Q Consensus       260 IRPk  263 (266)
                      ||||
T Consensus       151 IRPK  154 (154)
T PF14299_consen  151 IRPK  154 (154)
T ss_pred             EecC
Confidence            9998

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.64  E-value=2.3e-08  Score=67.79  Aligned_cols=44  Identities=34%  Similarity=0.647  Sum_probs=39.6

Q ss_pred             cccchHHHHHHHhcCChhhHHHhhhcChhhHhhhccchhhccCC
Q 024543            5 FVLPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKFL   48 (266)
Q Consensus         5 ~~Lpe~cia~ils~t~P~dacr~a~vs~~fr~aa~sD~vW~~fl   48 (266)
                      .+||++.+..|+++++|.|.+++++||+.|+.++.++.+|+++.
T Consensus         2 ~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~   45 (47)
T PF12937_consen    2 SSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLC   45 (47)
T ss_dssp             CCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC
T ss_pred             hHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhc
Confidence            57999999999999999999999999999999999999998764

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.32  E-value=5.1e-07  Score=58.33  Aligned_cols=40  Identities=33%  Similarity=0.522  Sum_probs=38.6

Q ss_pred             cchHHHHHHHhcCChhhHHHhhhcChhhHhhhccchhhcc
Q 024543            7 LPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEK   46 (266)
Q Consensus         7 Lpe~cia~ils~t~P~dacr~a~vs~~fr~aa~sD~vW~~   46 (266)
                      ||++++..|+++++|.|.+++++||+.|+.+.+++.+|..
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~   40 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK   40 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence            7999999999999999999999999999999999999975

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.30  E-value=2.5e-07  Score=62.39  Aligned_cols=44  Identities=34%  Similarity=0.555  Sum_probs=38.4

Q ss_pred             ccccchHHHHHHHhcCChhhHHHhhhcChhhHhhhccchhhccC
Q 024543            4 TFVLPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKF   47 (266)
Q Consensus         4 ~~~Lpe~cia~ils~t~P~dacr~a~vs~~fr~aa~sD~vW~~f   47 (266)
                      ..+||++++..|++++++.|.++++.||+.|+.+++++..|.++
T Consensus         3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~   46 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI   46 (48)
T ss_dssp             HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred             HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence            35899999999999999999999999999999999999999765

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A

Probab=91.39  E-value=0.15  Score=40.60  Aligned_cols=71  Identities=21%  Similarity=0.346  Sum_probs=56.4

Q ss_pred             ccccchHHHHHHHhcCChhhHHHhhhcChhhHhhhccchhhccCCCCcchhhccccCcccccccccCCCCHHHHHhhhcc
Q 024543            4 TFVLPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKFLPSDYKEIISNSSSISASSLMITSLSKKDLYFYLCH   83 (266)
Q Consensus         4 ~~~Lpe~cia~ils~t~P~dacr~a~vs~~fr~aa~sD~vW~~flP~dy~~i~~~~~~~~~~~~~~~~~skKely~~L~~   83 (266)
                      +.++|-+.|.-||...+|....++-.-|+-+  +-++|.+|.+|+=.||..-.....   |    .+.-+-+++|.++.+
T Consensus         4 vG~~py~ll~piL~~~~~~QL~~iE~~np~l--~~~tdeLW~~~i~rdFp~~~~~~~---~----~~~~~Wr~~Y~~~~~   74 (109)
T PF06881_consen    4 VGDVPYHLLRPILEKCSPEQLRRIEDNNPHL--IEDTDELWKKLIKRDFPEESKRQK---P----KEPESWRELYEKLKK   74 (109)
T ss_pred             cCCCCHHHHHHHHccCCHHHHHHHHHhCCCc--chhhHHHHHHHHHhHCcChhhccc---c----cccchHHHHHHHHHH
Confidence            4689999999999999999999999999765  567999999999999975222111   2    234588999998864

In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=87.97  E-value=0.2  Score=47.54  Aligned_cols=81  Identities=17%  Similarity=0.238  Sum_probs=56.0

Q ss_pred             cccchHHHHHHHhc-----CChhhHHHhhhcChhhHhhhccchhhccCCCCcchhhccccCccccccc-ccCCCCHHHHH
Q 024543            5 FVLPAQCISYIISL-----TTPRDASRLSLACPAFKSTADSDSVWEKFLPSDYKEIISNSSSISASSL-MITSLSKKDLY   78 (266)
Q Consensus         5 ~~Lpe~cia~ils~-----t~P~dacr~a~vs~~fr~aa~sD~vW~~flP~dy~~i~~~~~~~~~~~~-~~~~~skKely   78 (266)
                      ..||++.+-.|+..     ++-++.-++|+||+.|+-+|..|.+|+.+|=.-|+.-+-...   +... ..-..|-+++|
T Consensus       108 ~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~s~~~ln---~~~~~sky~~SWR~Mf  184 (366)
T KOG2997|consen  108 SVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQRSCIKLN---PKILQSKYYTSWREMF  184 (366)
T ss_pred             hhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHHhhhccc---hhhhhhHHHhHHHHHH
Confidence            67999998887764     555999999999999999999999999998866653322211   1000 01134677888


Q ss_pred             hhhccCCeeecC
Q 024543           79 FYLCHNPILINN   90 (266)
Q Consensus        79 ~~L~~~pvlld~   90 (266)
                      +.=.  -|.+|+
T Consensus       185 l~Rp--RvrFdG  194 (366)
T KOG2997|consen  185 LERP--RVRFDG  194 (366)
T ss_pred             hhCc--ceeecc
Confidence            7622  366665

>PF02018 CBM_4_9: Carbohydrate binding domain; InterPro: IPR003305 The 1,4-beta-glucanase CenC from Cellulomonas fimi contains two cellulose-binding domains, CBD(N1) and CBD(N2), arranged in tandem at its N terminus

Probab=82.23  E-value=21  Score=27.48  Aligned_cols=68  Identities=18%  Similarity=0.153  Sum_probs=42.3

Q ss_pred             ccCCCCeEEEEEEEEEcCCcCCCCCcCEEEEEEEcCCccceeEEEEeCCCCCCCCCCccccCCCeEEEEceeEEecCCCc
Q 024543          156 ILSFKTNYAAYLVFKFVKSRQGFDARPIEFDVYFEGSNNHKRRSALLDPPTNVSPQLSQDRGDGWTEIEMGDFFNENGDD  235 (266)
Q Consensus       156 ~LSp~t~Y~ay~v~kl~d~~~Gw~~~pv~~~v~~~g~~~~~~~~v~L~~~~~~~~~~p~~r~dgW~Eie~GeF~~~~~~~  235 (266)
                      .|-||.+|.+.|-+|....      .++.+.+...++.. ......-          ...-.+.|.+++ ++|... .+.
T Consensus        57 ~l~~G~~Y~~s~~vk~~~~------~~~~~~~~~~~~~~-~~~~~~~----------~~~~~~~W~~~s-~~ft~~-~~~  117 (131)
T PF02018_consen   57 SLKPGKTYTVSFWVKADSG------GTVSVSLRDEDGSP-YNWYTGQ----------TVTITGEWTKYS-GTFTAP-SDD  117 (131)
T ss_dssp             EE-TTSEEEEEEEEEESSS------EEEEEEEEESSTTT-EEEEEEE----------EEEETSSEEEEE-EEEEEE-SSC
T ss_pred             EecCCCEEEEEEEEEeCCC------CEEEEEEEEcCCCC-cEEEEEE----------EEECCCCcEEEE-EEEEEC-CCC
Confidence            3669999999999999874      56677776655521 1111110          011147899999 589887 444


Q ss_pred             cEEEEEE
Q 024543          236 GTVVCRL  242 (266)
Q Consensus       236 ~ev~fsl  242 (266)
                      ..+.|.+
T Consensus       118 ~~~~l~~  124 (131)
T PF02018_consen  118 DTVRLYF  124 (131)
T ss_dssp             EEEEEEE
T ss_pred             ceEEEEE
Confidence            5666654

These homologous CBDs are distinct in their selectivity for binding amorphous and not crystalline cellulose []. Multidimensional heteronuclear nuclear magnetic resonance (NMR) spectroscopy was used to determine the tertiary structure of the 152 amino acid N-terminal cellulose-binding domain from C. fimi 1,4-beta-glucanase CenC (CBDN1) []. The tertiary structure of CBDN1 is strikingly similar to that of the bacterial 1,3-1,4-beta-glucanases, as well as other sugar-binding proteins with jelly-roll folds.; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 3OEA_B 2ZEX_B 3OEB_A 2ZEY_A 2ZEW_A 1GUI_A 2W5F_A 2WZE_A 2WYS_A 2ZEZ_B ....

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=81.08  E-value=1.3  Score=42.95  Aligned_cols=37  Identities=16%  Similarity=0.318  Sum_probs=34.2

Q ss_pred             cccchHHHHHHHhcC-ChhhHHHhhhcChhhHhhhccc
Q 024543            5 FVLPAQCISYIISLT-TPRDASRLSLACPAFKSTADSD   41 (266)
Q Consensus         5 ~~Lpe~cia~ils~t-~P~dacr~a~vs~~fr~aa~sD   41 (266)
                      .+||++.+..|..++ +..|.-|+++||++.|+|+...
T Consensus         5 s~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~   42 (373)
T PLN03215          5 STLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGV   42 (373)
T ss_pred             hhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcccc
Confidence            479999999999998 7999999999999999998863

>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]

Probab=80.47  E-value=0.51  Score=45.07  Aligned_cols=49  Identities=14%  Similarity=0.174  Sum_probs=44.7

Q ss_pred             ccccchHHHHHHHhcCChhhHHHhhhcChhhHhhhccchhhccCCCCcc
Q 024543            4 TFVLPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKFLPSDY   52 (266)
Q Consensus         4 ~~~Lpe~cia~ils~t~P~dacr~a~vs~~fr~aa~sD~vW~~flP~dy   52 (266)
                      ++.+|.+-+..+++++.++++.+.|+||+.+...++-+..|++++-.++
T Consensus         8 le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~lw~r~c~k~l   56 (386)
T KOG4408|consen    8 LEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLPLWNRPCKKYL   56 (386)
T ss_pred             hhhcccccceeeecccchhhhhcceeechHHhhhhhccccccccccccc
Confidence            4678899999999999999999999999999999999999999985443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	266
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 1e-04
 Identities = 35/211 (16%), Positives = 59/211 (27%), Gaps = 46/211 (21%)

Query: 18  LTTPRDASRLSLACPAFKSTADSDSVWEKFLPSDYKEIISNSSSISASSL---------- 67
           LTT R          A  +    D       P + K ++          L          
Sbjct: 270 LTT-RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328

Query: 68  ---MITSLSKKDL-----YFYLCHNPILINNHTTSFSL-VQETG--KKCYM--------- 107
              +I    +  L     + ++  + +         SL V E    +K +          
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKL---TTIIESSLNVLEPAEYRKMFDRLSVFPPSA 385

Query: 108 -VGARVLSIAWGDSPQYWNWLSLREFRFPEVVKLREVWWFEIIARIETRILSFKT---NY 163
            +   +LS+ W D  +    + + +        L E    E    I +  L  K    N 
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLH---KYSLVEKQPKESTISIPSIYLELKVKLENE 442

Query: 164 AAY---LV--FKFVKSRQGFDARPIEFDVYF 189
            A    +V  +   K+    D  P   D YF
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	266
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.7
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.39
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.97
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	97.81
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.73
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.72
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	96.51
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	95.23
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	93.29
1dyo_A	160	Endo-1,4-beta-xylanase Y; carbohydrate-binding mod	91.15
4hfx_A	97	Transcription elongation factor B polypeptide 3; s	81.69

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.70  E-value=1.2e-08  Score=69.59  Aligned_cols=45  Identities=20%  Similarity=0.285  Sum_probs=39.8

Q ss_pred             cccccchHHHHHHHhcCChhhHHHhhhcChhhHhhhccchhhccC
Q 024543            3 ITFVLPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKF   47 (266)
Q Consensus         3 ~~~~Lpe~cia~ils~t~P~dacr~a~vs~~fr~aa~sD~vW~~f   47 (266)
                      ...+||++++..|+++++|.|.+++++||+.|+.++.++.+|+++
T Consensus         8 ~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~l   52 (53)
T 1fs1_A            8 SWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL   52 (53)
T ss_dssp             -CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred             CHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence            357899999999999999999999999999999999999999864

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.39  E-value=1.5e-07  Score=86.61  Aligned_cols=80  Identities=20%  Similarity=0.275  Sum_probs=60.6

Q ss_pred             ccccchHHHHHHHhcCChhhHHHhhhcChhhHhhhccchhhccCCCCcc---hhhccccCc-cc----cc--ccccCCCC
Q 024543            4 TFVLPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKFLPSDY---KEIISNSSS-IS----AS--SLMITSLS   73 (266)
Q Consensus         4 ~~~Lpe~cia~ils~t~P~dacr~a~vs~~fr~aa~sD~vW~~flP~dy---~~i~~~~~~-~~----~~--~~~~~~~s   73 (266)
                      +++||.+++.+|+||++|.|+|++|+||+.+|.+|+.+.+|+.||-.|+   .+|...+.+ ..    +.  .....+..
T Consensus         5 l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~~~W~si~~~s~p~~~~~~~~~~~~~~~~~~~   84 (312)
T 3l2o_B            5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPSWSSVDWKSLPDLEILKKPISEVTDGAFFD   84 (312)
T ss_dssp             HHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSGGGCCCCCGGGCCSCHHHHSSCSCC----CCC
T ss_pred             hHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccCCCCCccccccCcchhhccCcccccccccccc
Confidence            5689999999999999999999999999999999999999999998764   455443332 00    00  00012456


Q ss_pred             HHHHHhhhcc
Q 024543           74 KKDLYFYLCH   83 (266)
Q Consensus        74 kKely~~L~~   83 (266)
                      ++.+|.+=|-
T Consensus        85 ~~~~y~~~~p   94 (312)
T 3l2o_B           85 YMAVYRMCCP   94 (312)
T ss_dssp             HHHHHHHHCT
T ss_pred             HHHHHHhcCh
Confidence            8999999883

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.97  E-value=2.8e-06  Score=78.11  Aligned_cols=49  Identities=20%  Similarity=0.470  Sum_probs=46.1

Q ss_pred             CccccccchHHHHHHHhcCChhhHHHhhhcChhhHhhhccchhhccCCC
Q 024543            1 MDITFVLPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKFLP   49 (266)
Q Consensus         1 ~~~~~~Lpe~cia~ils~t~P~dacr~a~vs~~fr~aa~sD~vW~~flP   49 (266)
                      +|.+..||++++..|++|++|.|.|++|+||+.|+.+++++.+|++++-
T Consensus        16 ~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~   64 (445)
T 2ovr_B           16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCK   64 (445)
T ss_dssp             CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHT
T ss_pred             CChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhhee
Confidence            4788999999999999999999999999999999999999999998763

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=97.81  E-value=9.4e-06  Score=74.43  Aligned_cols=81  Identities=15%  Similarity=0.236  Sum_probs=60.6

Q ss_pred             cccccchHHHHHHHhcCChhhHH-HhhhcChhhHhhhccchhhccCCCCcchhhccccCcccccccccCCCCHHHHHhhh
Q 024543            3 ITFVLPAQCISYIISLTTPRDAS-RLSLACPAFKSTADSDSVWEKFLPSDYKEIISNSSSISASSLMITSLSKKDLYFYL   81 (266)
Q Consensus         3 ~~~~Lpe~cia~ils~t~P~dac-r~a~vs~~fr~aa~sD~vW~~flP~dy~~i~~~~~~~~~~~~~~~~~skKely~~L   81 (266)
                      .+..||++.+..||+++.|++.+ |+++||+.+|..++++.+|+++|...  .+......  +    .+..+-|.+|..-
T Consensus        50 ~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~--g~~~~~~~--~----~~~~~Wk~~y~~~  121 (297)
T 2e31_A           50 YLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE--GLVPEGSA--D----EERDHWQQFYFLS  121 (297)
T ss_dssp             CTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT--TCCCC-----------CCSCHHHHHHHH
T ss_pred             ChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc--Cccccccc--C----CCCCChhhhhehe
Confidence            45789999999999999999999 99999999999999999999988765  12111000  0    0235688999875


Q ss_pred             ccCCeeecCC
Q 024543           82 CHNPILINNH   91 (266)
Q Consensus        82 ~~~pvlld~g   91 (266)
                      -..-+||.|.
T Consensus       122 ~~gRNLL~NP  131 (297)
T 2e31_A          122 KRRRNLLRNP  131 (297)
T ss_dssp             HHCCCCSSCS
T ss_pred             ecccceeecC
Confidence            4445666653

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.73  E-value=6.9e-06  Score=75.52  Aligned_cols=51  Identities=20%  Similarity=0.395  Sum_probs=46.9

Q ss_pred             CccccccchH----HHHHHHhcCChhhHHHhhhcChhhHhhhccchhhccCCCCc
Q 024543            1 MDITFVLPAQ----CISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKFLPSD   51 (266)
Q Consensus         1 ~~~~~~Lpe~----cia~ils~t~P~dacr~a~vs~~fr~aa~sD~vW~~flP~d   51 (266)
                      .|++..||++    .+..|++|++|.|.|++|+||+.|+..++++.+|.+++-..
T Consensus         8 ~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~   62 (435)
T 1p22_A            8 RDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERM   62 (435)
T ss_dssp             CCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHH
T ss_pred             cChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhh
Confidence            3788899999    99999999999999999999999999999999999887544

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.72  E-value=9.1e-06  Score=74.56  Aligned_cols=48  Identities=19%  Similarity=0.225  Sum_probs=44.7

Q ss_pred             CccccccchHHHHHHHhcCChhhHHHhhhcChhhHhhhcc-chhhccCC
Q 024543            1 MDITFVLPAQCISYIISLTTPRDASRLSLACPAFKSTADS-DSVWEKFL   48 (266)
Q Consensus         1 ~~~~~~Lpe~cia~ils~t~P~dacr~a~vs~~fr~aa~s-D~vW~~fl   48 (266)
                      .|++..||++.+..|++|++|+|.|++++||+.++..+++ +.+|++++
T Consensus        12 ~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~   60 (464)
T 3v7d_B           12 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLL   60 (464)
T ss_dssp             CCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHH
T ss_pred             cCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            3778899999999999999999999999999999999987 89998876

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=96.51  E-value=0.0015  Score=57.77  Aligned_cols=44  Identities=20%  Similarity=0.305  Sum_probs=39.8

Q ss_pred             ccccchHHHHHHHhcCChhhHHHhhhcChhhHhhhccchhhccC
Q 024543            4 TFVLPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKF   47 (266)
Q Consensus         4 ~~~Lpe~cia~ils~t~P~dacr~a~vs~~fr~aa~sD~vW~~f   47 (266)
                      ..+||++++..|+++++++|.++++.||+.|+.++.+-..|.+.
T Consensus         9 ~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l   52 (336)
T 2ast_B            9 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL   52 (336)
T ss_dssp             SSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEE
T ss_pred             hhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheee
Confidence            47899999999999999999999999999999998777778653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=95.23  E-value=0.01  Score=56.42  Aligned_cols=36  Identities=19%  Similarity=0.492  Sum_probs=29.4

Q ss_pred             ccccccchHHHHHHHhcCC-hhhHHHhhhcChhhHhh
Q 024543            2 DITFVLPAQCISYIISLTT-PRDASRLSLACPAFKST   37 (266)
Q Consensus         2 ~~~~~Lpe~cia~ils~t~-P~dacr~a~vs~~fr~a   37 (266)
                      |+..+||++++..|++|++ ++|++++|.||+.++.+
T Consensus         4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             cchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            7889999999999999999 99999999999999988

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=93.29  E-value=0.044  Score=52.11  Aligned_cols=33  Identities=18%  Similarity=0.364  Sum_probs=31.3

Q ss_pred             ccchHHHHHHHhcC-ChhhHHHhhhcChhhHhhh
Q 024543            6 VLPAQCISYIISLT-TPRDASRLSLACPAFKSTA   38 (266)
Q Consensus         6 ~Lpe~cia~ils~t-~P~dacr~a~vs~~fr~aa   38 (266)
                      +||++++.+|++|+ +++|+++++.||+.|+.+.
T Consensus        15 ~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~   48 (592)
T 3ogk_B           15 ATVDDVIEQVMTYITDPKDRDSASLVCRRWFKID   48 (592)
T ss_dssp             CCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHH
T ss_pred             CCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhh
Confidence            79999999999999 8999999999999999873

>1dyo_A Endo-1,4-beta-xylanase Y; carbohydrate-binding module, xylan-binding; 2.1A {Clostridium thermocellum} SCOP: b.18.1.7 PDB: 1h6y_A 1h6x_A

Probab=91.15  E-value=5.2  Score=32.34  Aligned_cols=96  Identities=8%  Similarity=0.086  Sum_probs=56.8

Q ss_pred             cccCCCCeEEEEEEEEEcCCcCCCCCcCEEEEEEEcCCccceeEEEEeCCCCCCCCCCccccCCCeEEEEceeEEecCCC
Q 024543          155 RILSFKTNYAAYLVFKFVKSRQGFDARPIEFDVYFEGSNNHKRRSALLDPPTNVSPQLSQDRGDGWTEIEMGDFFNENGD  234 (266)
Q Consensus       155 ~~LSp~t~Y~ay~v~kl~d~~~Gw~~~pv~~~v~~~g~~~~~~~~v~L~~~~~~~~~~p~~r~dgW~Eie~GeF~~~~~~  234 (266)
                      ..|.||++|.+..-+|+.+..   ....+.+++...+... ..+...+..        -....++|.+++-|.|..+...
T Consensus        63 ~~l~~g~~Y~~Sa~V~~~~g~---~~~~v~~~l~~~~~~g-~~~y~~i~~--------~~~~~~~W~~L~G~~ft~~~~~  130 (160)
T 1dyo_A           63 RTFVPGNTYCFSVVASFIEGA---SSTTFCMKLQYVDGSG-TQRYDTIDM--------KTVGPNQWVHLYNPQYRIPSDA  130 (160)
T ss_dssp             TTSCTTCEEEEEEEEECCSSS---SCEEEEEEEEEECTTS-CEEEEEEEE--------EEECSSCCEEEEEEEEECCTTC
T ss_pred             hhccCCCEEEEEEEEEECCCC---CceeEEEEEEEEcCCC-CEEEEEEee--------EEEcCCccEEEECcEEEeCCCC
Confidence            468999999999999987642   2223444444322211 111222211        0112578999998899886542


Q ss_pred             ccEEEEEEEEecCcccccEEEEEEEEEeccC
Q 024543          235 DGTVVCRLCEPGSVQKRGIITQGIELRPKYG  265 (266)
Q Consensus       235 ~~ev~fsl~e~~~~wK~GLiv~GIeIRPk~~  265 (266)
                       ..+.+-+ | +..-..=+.|+.|.|.|...
T Consensus       131 -~~~~lyv-e-~~~~~~d~yiDdv~i~~~g~  158 (160)
T 1dyo_A          131 -TDMYVYV-E-TADDTINFYIDEAIGAVAGT  158 (160)
T ss_dssp             -EEEEEEE-E-ESSCCCCEEEEEEEEEETTC
T ss_pred             -CEEEEEE-E-CCCCCccEEEEEEEEEeCcc
Confidence             2343322 3 23345558999999998754

>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}

Probab=81.69  E-value=0.49  Score=36.28  Aligned_cols=64  Identities=19%  Similarity=0.327  Sum_probs=39.7

Q ss_pred             cchHHHHHHHhcCChhhHHHhhhcChhhHhhhccchhhccCCCCcchhhccccCcccccccccCCCCHHHHHhhhcc
Q 024543            7 LPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKFLPSDYKEIISNSSSISASSLMITSLSKKDLYFYLCH   83 (266)
Q Consensus         7 Lpe~cia~ils~t~P~dacr~a~vs~~fr~aa~sD~vW~~flP~dy~~i~~~~~~~~~~~~~~~~~skKely~~L~~   83 (266)
                      .|-+.+.-||-.-+|....++-.-|+.+  .-++|-+|.+++-.||..--       |    .+.-|-+++|.+|.+
T Consensus        13 ~Py~lL~PVLek~tp~QL~~IE~~nP~L--~~dTdeLWk~~c~rdF~~~~-------p----~e~esWRelY~rl~~   76 (97)
T 4hfx_A           13 VPYSVLEPVLERCTPDQLYRIEEYNHVL--IEETDQLWKVHCHRDFKEER-------P----EEYESWREMYLRLQD   76 (97)
T ss_dssp             -------CCGGGCCHHHHHHHHTC--------CCHHHHHHHC----CCSC-------C----CSSSCHHHHHHHHHH
T ss_pred             CcHHHHHHHHccCCHHHHHHHHHhCccc--chhhHHHHHHHHHhHCcccC-------C----CCCCCHHHHHHHHHH
Confidence            5777788899999999999999999966  67899999999999988431       1    134689999999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	266
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	7e-04
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	0.004

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (83), Expect = 7e-04
 Identities = 12/78 (15%), Positives = 28/78 (35%)

Query: 1  MDITFVLPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKFLPSDYKEIISNSS 60
           D   +LP +   Y++S   P+D  + +  C  ++  A+ + +W +    +  +   +  
Sbjct: 16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIK 75

Query: 61 SISASSLMITSLSKKDLY 78
                        K  Y
Sbjct: 76 RRKVIKPGFIHSPWKSAY 93

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.3 bits (74), Expect = 0.004
 Identities = 9/38 (23%), Positives = 17/38 (44%)

Query: 7  LPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVW 44
          LP + +  I S     +  ++S  C  +   A  +S+W
Sbjct: 4  LPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW 41

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	266
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.95
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	98.87
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.4
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.32
d1h6ya_	157	Xylan-binding domain {Clostridium thermocellum [Ta	92.32
d1guia_	155	Carbohydrate binding module from laminarinase 16A	88.48

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=2.9e-10  Score=85.51  Aligned_cols=50  Identities=20%  Similarity=0.492  Sum_probs=46.4

Q ss_pred             ccccccchHHHHHHHhcCChhhHHHhhhcChhhHhhhccchhhccCCCCc
Q 024543            2 DITFVLPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKFLPSD   51 (266)
Q Consensus         2 ~~~~~Lpe~cia~ils~t~P~dacr~a~vs~~fr~aa~sD~vW~~flP~d   51 (266)
                      |.+..||++++..|+++++|+|+|++|+||+.|+.++.+|.+|++.+-.+
T Consensus        17 D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~lW~~~~~r~   66 (102)
T d2ovrb1          17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEE   66 (102)
T ss_dssp             STTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTT
T ss_pred             CChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHc
Confidence            77889999999999999999999999999999999999999998776544

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=8.5e-10  Score=70.85  Aligned_cols=40  Identities=23%  Similarity=0.333  Sum_probs=38.9

Q ss_pred             cccchHHHHHHHhcCChhhHHHhhhcChhhHhhhccchhh
Q 024543            5 FVLPAQCISYIISLTTPRDASRLSLACPAFKSTADSDSVW   44 (266)
Q Consensus         5 ~~Lpe~cia~ils~t~P~dacr~a~vs~~fr~aa~sD~vW   44 (266)
                      +.||++++..|+++++|+|.||+++||+.|+.+++++.+|
T Consensus         2 ~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~lW   41 (41)
T d1fs1a1           2 DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW   41 (41)
T ss_dssp             CSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC
T ss_pred             CcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccC
Confidence            5799999999999999999999999999999999999999

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.40  E-value=3.2e-08  Score=74.20  Aligned_cols=47  Identities=17%  Similarity=0.205  Sum_probs=42.6

Q ss_pred             CccccccchHHHHHHHhcCChhhHHHhhhcChhhHhhhccc-hhhccC
Q 024543            1 MDITFVLPAQCISYIISLTTPRDASRLSLACPAFKSTADSD-SVWEKF   47 (266)
Q Consensus         1 ~~~~~~Lpe~cia~ils~t~P~dacr~a~vs~~fr~aa~sD-~vW~~f   47 (266)
                      .|++.+||++.+..|+++++|.|.|++|+||+.|+..+++| .+|++.
T Consensus         3 ~D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~LWr~l   50 (100)
T d1nexb1           3 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKL   50 (100)
T ss_dssp             CCHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHHHHHH
T ss_pred             CCchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence            47889999999999999999999999999999999877654 799875

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=5.5e-08  Score=74.84  Aligned_cols=51  Identities=20%  Similarity=0.393  Sum_probs=46.3

Q ss_pred             Cccccccch----HHHHHHHhcCChhhHHHhhhcChhhHhhhccchhhccCCCCc
Q 024543            1 MDITFVLPA----QCISYIISLTTPRDASRLSLACPAFKSTADSDSVWEKFLPSD   51 (266)
Q Consensus         1 ~~~~~~Lpe----~cia~ils~t~P~dacr~a~vs~~fr~aa~sD~vW~~flP~d   51 (266)
                      .|++..||.    +.+..|+||++|.|.|++|+||+.|+..++++.+|.+++-.+
T Consensus         8 ~D~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~lWk~~~~~~   62 (118)
T d1p22a1           8 RDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERM   62 (118)
T ss_dssp             CCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHH
T ss_pred             ccHHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHhh
Confidence            478888996    899999999999999999999999999999999999876443

>d1h6ya_ b.18.1.7 (A:) Xylan-binding domain {Clostridium thermocellum [TaxId: 1515]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: CBM22
domain: Xylan-binding domain
species: Clostridium thermocellum [TaxId: 1515]

Probab=92.32  E-value=1.5  Score=32.15  Aligned_cols=100  Identities=7%  Similarity=0.082  Sum_probs=58.3

Q ss_pred             EEeccccCCCCeEEEEEEEEEcCCcCCCCCcCEEEEEEEcCCccceeEEEEeCCCCCCCCCCccccCCCeEEEEceeEEe
Q 024543          151 RIETRILSFKTNYAAYLVFKFVKSRQGFDARPIEFDVYFEGSNNHKRRSALLDPPTNVSPQLSQDRGDGWTEIEMGDFFN  230 (266)
Q Consensus       151 ~i~~~~LSp~t~Y~ay~v~kl~d~~~Gw~~~pv~~~v~~~g~~~~~~~~v~L~~~~~~~~~~p~~r~dgW~Eie~GeF~~  230 (266)
                      .+....|.||++|.+.+-+|+.+...+   ..+.+.+...++.. ......+..        .....++|.++..++|..
T Consensus        56 ~~~~~~l~~g~tY~~s~~vk~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~--------~~~~~~~W~~~~~~~~~~  123 (157)
T d1h6ya_          56 ALNPRTFVPGNTYCFSVVASFIEGASS---TTFCMKLQYVDGSG-TQRYDTIDM--------KTVGPNQWVHLYNPQYRI  123 (157)
T ss_dssp             ECCTTTSCTTCEEEEEEEEECCSSSSC---EEEEEEEEEECTTS-CEEEEEEEE--------EEECTTCCEEEEEEEEEC
T ss_pred             EecceeccCCCEEEEEEEEEeCCCCcc---eeEEEEEEEecCCC-ceeEEEeeE--------EEeccCccEEEEEEEEEC
Confidence            344456899999999999998764332   22344444432221 111111111        112247899998889877


Q ss_pred             cCCCccEEEEEEEEecCcccccEEEEEEEEEeccC
Q 024543          231 ENGDDGTVVCRLCEPGSVQKRGIITQGIELRPKYG  265 (266)
Q Consensus       231 ~~~~~~ev~fsl~e~~~~wK~GLiv~GIeIRPk~~  265 (266)
                      ..+. ..+.|-+ +. ..-..-+.|+-+.+.|+.+
T Consensus       124 ~~~~-~~~~l~~-~~-~~~~~~~yiDDv~~~~~~~  155 (157)
T d1h6ya_         124 PSDA-TDMYVYV-AT-ADDTINFYIDEAIGAVAGT  155 (157)
T ss_dssp             CTTC-EEEEEEE-EE-SSCCCCEEEEEEEEEETTC
T ss_pred             CCCC-cEEEEEE-EC-CCCCceEEEeeEEEecccc
Confidence            6543 3455532 22 2222349999999999875

>d1guia_ b.18.1.14 (A:) Carbohydrate binding module from laminarinase 16A {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: CBM4/9
domain: Carbohydrate binding module from laminarinase 16A
species: Thermotoga maritima [TaxId: 2336]

Probab=88.48  E-value=3.4  Score=30.20  Aligned_cols=88  Identities=14%  Similarity=0.178  Sum_probs=51.8

Q ss_pred             ccCCCCeEEEEEEEEEcCCcCCCCCcCEEEEEEEcCCccceeEEEEeCCCCCCCCCCccccCCCeEEEEceeEEecCCCc
Q 024543          156 ILSFKTNYAAYLVFKFVKSRQGFDARPIEFDVYFEGSNNHKRRSALLDPPTNVSPQLSQDRGDGWTEIEMGDFFNENGDD  235 (266)
Q Consensus       156 ~LSp~t~Y~ay~v~kl~d~~~Gw~~~pv~~~v~~~g~~~~~~~~v~L~~~~~~~~~~p~~r~dgW~Eie~GeF~~~~~~~  235 (266)
                      .|.||.+|.+.|..|-...      .++.+.+...++....-....+            .-...|.++++ +|......+
T Consensus        68 ~l~~g~~Y~lSf~~k~~~~------~~~~~~~~~~~~~~~~~~~~~~------------~~t~~W~~~s~-~f~~~~~~~  128 (155)
T d1guia_          68 GLYRGKTYTISFKAKADTP------RPINVKILQNHDPWTNYFAQTV------------NLTADWQTFTF-TYTHPDDAD  128 (155)
T ss_dssp             ECCTTCEEEEEEEEEESSC------EEEEEEEECSSTTCCEEEEEEE------------EECSSCEEEEE-EEECCTTSC
T ss_pred             EecCCCEEEEEEEEEeCCC------CcEEEEEEEcCCCCeEEeeeEE------------eeccccEEEEE-EEEecCCCC
Confidence            3789999999999886432      2344444433222101111111            11357999884 787765444


Q ss_pred             cEEEEEEEEecCcccccEEEEEEEEEec
Q 024543          236 GTVVCRLCEPGSVQKRGIITQGIELRPK  263 (266)
Q Consensus       236 ~ev~fsl~e~~~~wK~GLiv~GIeIRPk  263 (266)
                      ..+.+.+. .++.-.+.+.|+-|.|-||
T Consensus       129 ~~~~l~~~-~~~~~~~~~~iDnV~l~~~  155 (155)
T d1guia_         129 EVVQISFE-LGEGTATTIYFDDVTVSPQ  155 (155)
T ss_dssp             SEEEEEEE-CCSSCCCEEEEEEEEEEEC
T ss_pred             ccEEEEEE-ECCCCCcEEEEEEEEEEEC
Confidence            45555433 3333356799999999997