Citrus Sinensis ID: 024556

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260------
Protein Sequence
METASARISTRCHWWSHTKTVTLIWFISFVLFYSFFHMALQNSSQNYPSSGGITSHSHIPNGERRARLYDKMARDLDDHGAAFLKQGETSQSLLLSDIFTLKDGSVTPVHKAANPPVRANVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARLLGHPRASPTVELL
Secondary Structure (PSIPRED)
cccccccHHcccccccccccEEHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHccHHHccccccccccccccEEccccEEEEEcccccccEEEEEEEcccccccHHHHHHHHHcccccccEEEEEcccccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHccccEEEEEEEEEcccccEEEEEEEcccccHHHHHHHHHHHccccccccccccEEHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHccHHHHccccccccccHHHHEEcccccEEEEEEEccccEEEEEEcccHHHHHHHHHHHHHHHcccccccEEEEccccEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHccccEEEEEEEEEccccEEEEEEEEcccccHHHHHHHHHHHcccccHHHcccHHHHHHHHHHHHccccccccHHcc
Coil and Loop (DISEMBL)
METASARIstrchwwshtktVTLIWFISFVLFYSFFHMALqnssqnypssggitshshipngeRRARLYDKMARDLDDHGAAFLKQGETSQSLLLSdiftlkdgsvtpvhkaanppvranvlylspkysvpisdavkrifsphfdkviwfqnsslyhfsmfhashhispvpatedeIEAEATAVRAVAEDLCPLKIVLDRVILTSTGVLLGCwqvisgtdpMTIRAKLRtalpnapekqlydpaiLHTSFARllghprasptvell
Flexible Loop (DISEMBL)
metasaristrchwwshtKTVTLIWFISFVLFYSFFHMALQNSSQNYPSSggitshshipnGERRARLYDKMARDLDDHGAAFLKQGETSQSLLLSDIFTLKDGSVtpvhkaanppvrANVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARLlghprasptvell
Low Complexity Region (SEG)
METASARISTRCHWWSHTKTVTLIWFISFVLFYSFFHMALQNSSQNYPSSGGITSHSHIPNGERRARLYDKMARDLDDHGAAFLKQGETSQSLLLSDIFTLKDGSVTPVHKAANPPVRANVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPatedeieaeatavravaeDLCPLKIVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARLLGHPRASPTVELL
Disordered region (IsUnstruct)
*******ISTRCHWWSHTKTVTLIWFISFVLFYSFFHMAL*****************************************AFL******QSLLLSDIFTLKDGSVTPVHKAANPPVRANVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARLL************
Disordered Region (DISOPRED)
**********RCHWWSHTKTVTLIWFISFVLFYSFFHMAL****************************YDKMARDLDDHGAAF*********LLLSDIFTLKDGSVTPVHKAANPPVRANVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARLLGHPR********
Disordered Region (DISEMBL)
**********RCHWWSHTKTVTLIWFISFVLFYSFFHMALQNSSQNYPSSGGITSHSHIPNGERRARLYDKMARDLDDHGAAFLKQGETSQSLLLSDIFTLKDGSVTPVHKAANPPVRANVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARLLGHPR********
Disordered Region (DISPRO)
***ASARISTRCHWWSHTKTVTLIWFISFVLFYSFFHMALQNS*******************ERRARLYDKMARDLDDHGAAFLKQGETSQSLLLSDIFTLKDGSVTPVHKAANPPVRANVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARLLGHP*********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
METASARISTRCHWWSHTKTVTLIWFISFVLFYSFFHMALQNSSQNYPSSGGITSHSHIPNGERRARLYDKMARDLDDHGAAFLKQGETSQSLLLSDIFTLKDGSVTPVHKAANPPVRANVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARLLGHPRASPTVELL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	266
255540995	314	conserved hypothetical protein [Ricinus	0.921	0.780	0.768	1e-105
225456739	324	PREDICTED: uncharacterized protein LOC10	0.921	0.756	0.748	1e-103
359491718	310	PREDICTED: uncharacterized protein LOC10	0.917	0.787	0.744	1e-103
356516786	315	PREDICTED: uncharacterized protein LOC10	0.928	0.784	0.741	1e-101
255645528	315	unknown [Glycine max]	0.928	0.784	0.741	1e-101
449440782	308	PREDICTED: uncharacterized protein LOC10	0.902	0.779	0.725	6e-97
449477262	308	PREDICTED: uncharacterized protein LOC10	0.906	0.782	0.718	1e-96
356507143	309	PREDICTED: uncharacterized protein LOC10	0.898	0.773	0.729	3e-95
224141705	249	predicted protein [Populus trichocarpa]	0.710	0.759	0.842	3e-87
297842203	308	hypothetical protein ARALYDRAFT_476589 [	0.890	0.769	0.648	1e-81

>gi|255540995|ref|XP_002511562.1| conserved hypothetical protein [Ricinus communis] gi|223550677|gb|EEF52164.1| conserved hypothetical protein [Ricinus communis]

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 192/250 (76%), Positives = 217/250 (86%), Gaps = 5/250 (2%)

Query: 13  HWWSHTKTVTLIWFISFVLFYSFFHMALQNS-SQNYPSSGGITSHSHIPNGERRARLYDK 71
           +WWSH+KTVTLIW    ++  S   +AL+NS SQNYPSS   +      N E+R++LYDK
Sbjct: 9   NWWSHSKTVTLIWSFCVIISISILQLALKNSPSQNYPSSSSDSLS----NMEQRSKLYDK 64

Query: 72  MARDLDDHGAAFLKQGETSQSLLLSDIFTLKDGSVTPVHKAANPPVRANVLYLSPKYSVP 131
           MARDLDD+G +FLK G+TSQSL LSDIFTLKDGSVTPV KAANPPVRANVLYLS +YSV 
Sbjct: 65  MARDLDDNGPSFLKHGQTSQSLSLSDIFTLKDGSVTPVLKAANPPVRANVLYLSSEYSVR 124

Query: 132 ISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDL 191
           IS+AVKRIFSP+FDK IWFQNSS+YHFSMFHASHHI PVPATEDE+EAEA+AV +VAE L
Sbjct: 125 ISEAVKRIFSPYFDKAIWFQNSSVYHFSMFHASHHIGPVPATEDEVEAEASAVGSVAEGL 184

Query: 192 CPLKIVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFA 251
           CPL+IVLDRV+LTSTGVLLGCWQVISG DP+TIRAKLRTALP+APEKQLYD AILHTSFA
Sbjct: 185 CPLEIVLDRVVLTSTGVLLGCWQVISGPDPITIRAKLRTALPHAPEKQLYDAAILHTSFA 244

Query: 252 RLLGHPRASP 261
           RLLGHP+ SP
Sbjct: 245 RLLGHPKDSP 254

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456739|ref|XP_002275470.1| PREDICTED: uncharacterized protein LOC100250065 isoform 1 [Vitis vinifera] gi|297733993|emb|CBI15240.3| unnamed protein product [Vitis vinifera]

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 187/250 (74%), Positives = 209/250 (83%), Gaps = 5/250 (2%)

Query: 13  HWWSHTKTVTLIWFISFVLFYSFFHMALQNSSQNYPSSGGITSHSHIPNGERRARLYDKM 72
           +WWSH+KTV LIW  S +LFY      L+NSS NYPS+    S S     ERR++LYDKM
Sbjct: 6   NWWSHSKTVVLIWLTSALLFYFGLQFVLRNSSLNYPSAVSTMSDS-----ERRSKLYDKM 60

Query: 73  ARDLDDHGAAFLKQGETSQSLLLSDIFTLKDGSVTPVHKAANPPVRANVLYLSPKYSVPI 132
             DL++HGAAFL+ GETSQSL LSD+FTLKDG VTPV KAA PPVRANVLYLS ++SVPI
Sbjct: 61  ESDLNEHGAAFLEHGETSQSLSLSDLFTLKDGIVTPVLKAAKPPVRANVLYLSTEFSVPI 120

Query: 133 SDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLC 192
           S+AV+ IFSP+FDKVIWFQNSSLYHFSMFHASHHI+PVPATE EIE EATAV AVA+ LC
Sbjct: 121 SEAVRSIFSPYFDKVIWFQNSSLYHFSMFHASHHITPVPATEVEIEGEATAVEAVAKALC 180

Query: 193 PLKIVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFAR 252
           PLKIVLDRV+LT TGVLLGCWQV SGTDP+TIRAKLRTALP AP+ QLYD AILHTSFAR
Sbjct: 181 PLKIVLDRVLLTPTGVLLGCWQVASGTDPVTIRAKLRTALPRAPKNQLYDNAILHTSFAR 240

Query: 253 LLGHPRASPT 262
           LLG P+ SPT
Sbjct: 241 LLGPPKFSPT 250

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491718|ref|XP_003634311.1| PREDICTED: uncharacterized protein LOC100250065 isoform 2 [Vitis vinifera]

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 186/250 (74%), Positives = 209/250 (83%), Gaps = 6/250 (2%)

Query: 13  HWWSHTKTVTLIWFISFVLFYSFFHMALQNSSQNYPSSGGITSHSHIPNGERRARLYDKM 72
           +WWSH+KTV LIW  S +LFY      L+NSS NYPS       S + + ERR++LYDKM
Sbjct: 6   NWWSHSKTVVLIWLTSALLFYFGLQFVLRNSSLNYPSV------STMSDSERRSKLYDKM 59

Query: 73  ARDLDDHGAAFLKQGETSQSLLLSDIFTLKDGSVTPVHKAANPPVRANVLYLSPKYSVPI 132
             DL++HGAAFL+ GETSQSL LSD+FTLKDG VTPV KAA PPVRANVLYLS ++SVPI
Sbjct: 60  ESDLNEHGAAFLEHGETSQSLSLSDLFTLKDGIVTPVLKAAKPPVRANVLYLSTEFSVPI 119

Query: 133 SDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLC 192
           S+AV+ IFSP+FDKVIWFQNSSLYHFSMFHASHHI+PVPATE EIE EATAV AVA+ LC
Sbjct: 120 SEAVRSIFSPYFDKVIWFQNSSLYHFSMFHASHHITPVPATEVEIEGEATAVEAVAKALC 179

Query: 193 PLKIVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFAR 252
           PLKIVLDRV+LT TGVLLGCWQV SGTDP+TIRAKLRTALP AP+ QLYD AILHTSFAR
Sbjct: 180 PLKIVLDRVLLTPTGVLLGCWQVASGTDPVTIRAKLRTALPRAPKNQLYDNAILHTSFAR 239

Query: 253 LLGHPRASPT 262
           LLG P+ SPT
Sbjct: 240 LLGPPKFSPT 249

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516786|ref|XP_003527074.1| PREDICTED: uncharacterized protein LOC100791859 [Glycine max]

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 186/251 (74%), Positives = 213/251 (84%), Gaps = 4/251 (1%)

Query: 16  SHTKTVTLIWFISFVLFYSFFHMALQNSSQNYPSSGGITSHSHIPNGERRARLYDKMARD 75
           SH+KTV LIW IS   F++ F MAL NSSQ  PSS  + S +   N  +R++LYDKM RD
Sbjct: 9   SHSKTVVLIWLISAFCFFTLFQMALYNSSQT-PSSTSLDSPNS--NTGQRSKLYDKMGRD 65

Query: 76  LDDHGAAFLKQGETSQSLLLSDIFTLKDGSVTPVHKAANPPVRANVLYLSPKYSVPISDA 135
           LD+HGAAFLK GETSQSL LSDIFTLKDGSVTPV K ANPPVRANVLYLS ++SVPI++A
Sbjct: 66  LDEHGAAFLKHGETSQSLSLSDIFTLKDGSVTPVLKPANPPVRANVLYLSTEFSVPIAEA 125

Query: 136 VKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLK 195
           VK +F+P+FDK IWFQNSSLYHFSMFHASHHI PVPAT++EIEAEA++V AV   LCPLK
Sbjct: 126 VKNVFNPYFDKAIWFQNSSLYHFSMFHASHHIVPVPATKEEIEAEASSVEAVVATLCPLK 185

Query: 196 IVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARLLG 255
           IVLDRV+LTSTGVLLGCWQV SGTDP+TIRAKL+ ALP+APEKQLYD AILHTSFARLLG
Sbjct: 186 IVLDRVVLTSTGVLLGCWQVTSGTDPITIRAKLKNALPHAPEKQLYDAAILHTSFARLLG 245

Query: 256 HPRA-SPTVEL 265
            P+A SP+ +L
Sbjct: 246 PPKALSPSEQL 256

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255645528|gb|ACU23259.1| unknown [Glycine max]

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 186/251 (74%), Positives = 213/251 (84%), Gaps = 4/251 (1%)

Query: 16  SHTKTVTLIWFISFVLFYSFFHMALQNSSQNYPSSGGITSHSHIPNGERRARLYDKMARD 75
           SH+KTV LIW IS   F++ F MAL NSSQ  PSS  + S +   N  +R++LYDKM RD
Sbjct: 9   SHSKTVVLIWLISAFCFFTLFQMALYNSSQT-PSSTSLDSPNS--NTGQRSKLYDKMGRD 65

Query: 76  LDDHGAAFLKQGETSQSLLLSDIFTLKDGSVTPVHKAANPPVRANVLYLSPKYSVPISDA 135
           LD+HGAAFLK GETSQSL LSDIFTLKDGSVTPV K ANPPVRANVLYLS ++SVPI++A
Sbjct: 66  LDEHGAAFLKHGETSQSLSLSDIFTLKDGSVTPVLKPANPPVRANVLYLSTEFSVPIAEA 125

Query: 136 VKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLK 195
           VK +F+P+FDK IWFQNSSLYHFSMFHASHHI PVPAT++EIEAEA++V AV   LCPLK
Sbjct: 126 VKNVFNPYFDKAIWFQNSSLYHFSMFHASHHIVPVPATKEEIEAEASSVEAVVATLCPLK 185

Query: 196 IVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARLLG 255
           IVLDRV+LTSTGVLLGCWQV SGTDP+TIRAKL+ ALP+APEKQLYD AILHTSFARLLG
Sbjct: 186 IVLDRVVLTSTGVLLGCWQVTSGTDPITIRAKLKNALPHAPEKQLYDAAILHTSFARLLG 245

Query: 256 HPRA-SPTVEL 265
            P+A SP+ +L
Sbjct: 246 PPKALSPSEQL 256

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440782|ref|XP_004138163.1| PREDICTED: uncharacterized protein LOC101220816 [Cucumis sativus]

 Score =  359 bits (922), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 180/248 (72%), Positives = 205/248 (82%), Gaps = 8/248 (3%)

Query: 16  SHTKTVTLIWFISFVLFYSFFHMALQNSSQNYPSSGGITSHSHIPNGERRARLYDKMARD 75
           +H+ TV LIW  S VLF+  F MAL NS+ +  SS   +        E R++LYDKM RD
Sbjct: 9   AHSTTVALIWLTSAVLFFFLFQMALHNSTSSSDSSVSNS--------ELRSKLYDKMERD 60

Query: 76  LDDHGAAFLKQGETSQSLLLSDIFTLKDGSVTPVHKAANPPVRANVLYLSPKYSVPISDA 135
           LD+ GA FLK GETSQSL LSDIFT+KDG+VTPV KAANPPVRANVLYLS +YSVPI +A
Sbjct: 61  LDEKGAVFLKGGETSQSLSLSDIFTIKDGTVTPVLKAANPPVRANVLYLSTEYSVPIFEA 120

Query: 136 VKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLK 195
           VK IF P+FD+ IWFQNSSLYHFSMFHASHHI+P+PA+ DEIEAEA+AV++  E +C LK
Sbjct: 121 VKSIFDPYFDEAIWFQNSSLYHFSMFHASHHITPIPASNDEIEAEASAVKSATEHMCHLK 180

Query: 196 IVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARLLG 255
           IVLDRVILTSTGVLLGCWQVISGTDP+TIRAKLRTALP+APEKQLYD AILHTSFARLLG
Sbjct: 181 IVLDRVILTSTGVLLGCWQVISGTDPVTIRAKLRTALPHAPEKQLYDAAILHTSFARLLG 240

Query: 256 HPRASPTV 263
           HP+ S TV
Sbjct: 241 HPKISQTV 248

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449477262|ref|XP_004154975.1| PREDICTED: uncharacterized protein LOC101228237 [Cucumis sativus]

 Score =  358 bits (920), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 179/249 (71%), Positives = 206/249 (82%), Gaps = 8/249 (3%)

Query: 16  SHTKTVTLIWFISFVLFYSFFHMALQNSSQNYPSSGGITSHSHIPNGERRARLYDKMARD 75
           +H+ TV LIW  S VLF+  F MAL NS+ +  SS   +        E R++LYDKM RD
Sbjct: 9   AHSTTVALIWLTSAVLFFFLFQMALHNSTSSSDSSVSNS--------ELRSKLYDKMERD 60

Query: 76  LDDHGAAFLKQGETSQSLLLSDIFTLKDGSVTPVHKAANPPVRANVLYLSPKYSVPISDA 135
           LD+ GA FLK GETSQSL LSDIFT+KDG+VTPV KAANPPVRANVLYLS +YSVPI +A
Sbjct: 61  LDEKGAVFLKGGETSQSLSLSDIFTIKDGTVTPVLKAANPPVRANVLYLSTEYSVPIFEA 120

Query: 136 VKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLK 195
           VK IF P+FD+ IWFQNSSLYHFSMFHASHHI+P+PA+ DEIEAEA+AV++  E +C LK
Sbjct: 121 VKSIFDPYFDEAIWFQNSSLYHFSMFHASHHITPIPASNDEIEAEASAVKSATEHMCHLK 180

Query: 196 IVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARLLG 255
           IVLDRVILTSTGVLLGCWQVISGTDP+TIRAKLRTALP+APEKQLYD AILHTSFARLLG
Sbjct: 181 IVLDRVILTSTGVLLGCWQVISGTDPVTIRAKLRTALPHAPEKQLYDAAILHTSFARLLG 240

Query: 256 HPRASPTVE 264
           HP+ S T++
Sbjct: 241 HPKISQTLD 249

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507143|ref|XP_003522330.1| PREDICTED: uncharacterized protein LOC100789685, partial [Glycine max]

 Score =  353 bits (907), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 178/244 (72%), Positives = 204/244 (83%), Gaps = 5/244 (2%)

Query: 21  VTLIWFISFVLFYSFFHMALQNSSQNYPSSGGITSHSHIPNGERRARLYDKMARDLDDHG 80
           V LIWFIS   F++ F MAL NSSQ  PSS  + S +   N  +R++LYDKM RDLD+HG
Sbjct: 3   VVLIWFISAFCFFTLFKMALYNSSQT-PSSTSLDSPN--SNTGQRSKLYDKMGRDLDEHG 59

Query: 81  AAFLKQGETSQSLLLSDIFTLKDGSVTPVHKAANPPVRANVLYLSPKYSVPISDAVKRIF 140
           AAFLK GETSQSL LSDIFTLKDGSVTP  K ANPPVRANVLYLS ++SVPI++AVK +F
Sbjct: 60  AAFLKHGETSQSLSLSDIFTLKDGSVTPALKPANPPVRANVLYLSTEFSVPIAEAVKNVF 119

Query: 141 SPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVLDR 200
           +P+FDK IWFQNSSLYHFSMFHASHHI PVPAT++EIEAEA++V  VA  LCPLKIVLDR
Sbjct: 120 NPYFDKAIWFQNSSLYHFSMFHASHHIVPVPATKEEIEAEASSVEVVAATLCPLKIVLDR 179

Query: 201 VILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARLLGHPRA- 259
           V LTSTGVLLGCWQVI+GTDP+TIRA L+ ALP+A EKQLYD AILH SFARLLG P+A 
Sbjct: 180 V-LTSTGVLLGCWQVITGTDPITIRANLKNALPHASEKQLYDAAILHLSFARLLGLPKAL 238

Query: 260 SPTV 263
           SP++
Sbjct: 239 SPSI 242

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141705|ref|XP_002324205.1| predicted protein [Populus trichocarpa] gi|222865639|gb|EEF02770.1| predicted protein [Populus trichocarpa]

 Score =  327 bits (838), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 160/190 (84%), Positives = 173/190 (91%), Gaps = 1/190 (0%)

Query: 72  MARDLDDHGAAFLKQGETSQSLLLSDIFTLKDGSVTPVHKAANPPVRANVLYLSPKYSVP 131
           M RDLD+ GAAFLK GETSQSLLLSDIFTLKDGSVTPV KAANPPVRANVLYLSP+YSVP
Sbjct: 1   MERDLDERGAAFLKHGETSQSLLLSDIFTLKDGSVTPVLKAANPPVRANVLYLSPEYSVP 60

Query: 132 ISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDL 191
           ISD VK  FS +FDKV WFQNSS+YH SMFHASHHI PVP TEDEIEAE  AV+AVA+ L
Sbjct: 61  ISDNVKNTFSSYFDKV-WFQNSSVYHSSMFHASHHIEPVPVTEDEIEAEVNAVKAVADFL 119

Query: 192 CPLKIVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFA 251
           CPLKIVLDRV+LTSTGVLLGCWQVISGTDP+TIRAKL+TALP+AP+KQLYD AILHTSFA
Sbjct: 120 CPLKIVLDRVVLTSTGVLLGCWQVISGTDPLTIRAKLKTALPHAPKKQLYDDAILHTSFA 179

Query: 252 RLLGHPRASP 261
           RLLGHP++ P
Sbjct: 180 RLLGHPKSPP 189

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842203|ref|XP_002888983.1| hypothetical protein ARALYDRAFT_476589 [Arabidopsis lyrata subsp. lyrata] gi|297334824|gb|EFH65242.1| hypothetical protein ARALYDRAFT_476589 [Arabidopsis lyrata subsp. lyrata]

 Score =  308 bits (789), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 157/242 (64%), Positives = 190/242 (78%), Gaps = 5/242 (2%)

Query: 19  KTVTLIWFISFVLFYSFFHMALQNSSQNYPSSGGITSHSHIPNGERRARLYDKMARDLDD 78
           +TV L W IS  +FYS F M L+NS  +  SS    S++     E+  RLYDKM RD+ +
Sbjct: 15  RTVVLFWTISLTIFYSLFQMGLRNSPSSSSSSDSFISYA-----EQSTRLYDKMERDIQE 69

Query: 79  HGAAFLKQGETSQSLLLSDIFTLKDGSVTPVHKAANPPVRANVLYLSPKYSVPISDAVKR 138
           +G  F KQGETSQSL LSD+FTLKDG ++PV K ANPPVRANVL+LS +YSVP+S AV+ 
Sbjct: 70  NGPLFFKQGETSQSLSLSDLFTLKDGKISPVLKVANPPVRANVLHLSTEYSVPVSKAVEN 129

Query: 139 IFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVL 198
           +FSP+F+  IWFQ+S +YHFSMFHAS+HI  VPATEDE+E EA AV+AVA  LCPL+I+L
Sbjct: 130 VFSPYFENTIWFQDSKMYHFSMFHASNHIFSVPATEDEVEGEAAAVKAVANKLCPLEIIL 189

Query: 199 DRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARLLGHPR 258
           DRV+LTSTGVLLGCW+V SG DP+TIR+KLR+ LP APEKQLYD AILHTS ARLLG P 
Sbjct: 190 DRVLLTSTGVLLGCWKVYSGDDPITIRSKLRSVLPRAPEKQLYDAAILHTSLARLLGPPA 249

Query: 259 AS 260
           +S
Sbjct: 250 SS 251

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	266
TAIR|locus:2019230	314	AT1G74530 "AT1G74530" [Arabido	0.898	0.761	0.590	1.1e-73

TAIR|locus:2019230 AT1G74530 "AT1G74530" [Arabidopsis thaliana (taxid:3702)]

 Score = 744 (267.0 bits), Expect = 1.1e-73, P = 1.1e-73
 Identities = 144/244 (59%), Positives = 175/244 (71%)

Query:    19 KTVTLIWFISFVLFYSFFHMALQNSSQNYPSSGGITSHSHIPNGERRARLYDKMARDLDD 78
             +T  L W IS  +FYS F M ++NS    PS+   +S S +   E+  RLY+KM +DL +
Sbjct:    15 RTAVLFWTISLTIFYSLFQMGIRNS----PSTSSPSSDSFVSYAEQSTRLYNKMEQDLQE 70

Query:    79 HGAAFLKQGETSQSLLLSDIFTLKDGSVTPVHKAANPPVRANVLYLSPKYSVPISDAVKR 138
             +G  FLKQGETSQSL LSD+FTLKDG + PV K ANPPVRANVL+LS +YSVP+ + VK 
Sbjct:    71 NGPVFLKQGETSQSLSLSDLFTLKDGKIAPVLKVANPPVRANVLHLSTEYSVPVLEVVKN 130

Query:   139 IFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPXXXXXXXXXXXXXXXXXXDLCPLKIVL 198
             +FSP+F+  IWFQ+S +YHFSMFHAS+HI  VP                  +LCPL+I+L
Sbjct:   131 VFSPYFENTIWFQDSKMYHFSMFHASNHIFSVPATEVEVEAEAAAVKAVAKELCPLEIIL 190

Query:   199 DRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARLLGHPR 258
             DRV+LTSTGVLLGCW+V SG DP+TIR KLR+ LP APEKQLYD AILHTS ARLLG P 
Sbjct:   191 DRVLLTSTGVLLGCWKVNSGDDPITIRLKLRSVLPRAPEKQLYDAAILHTSLARLLGPP- 249

Query:   259 ASPT 262
              SPT
Sbjct:   250 ISPT 253


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.135   0.421    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      266       248   0.00079  114 3  11 22  0.39    33
                                                     32  0.46    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  601 (64 KB)
  Total size of DFA:  195 KB (2110 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.67u 0.07s 20.74t   Elapsed:  00:00:02
  Total cpu time:  20.67u 0.07s 20.74t   Elapsed:  00:00:02
  Start:  Fri May 10 13:01:23 2013   End:  Fri May 10 13:01:25 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	266
PF13563	153	2_5_RNA_ligase2: 2'-5' RNA ligase superfamily; PDB	96.65
PRK13679	168	hypothetical protein; Provisional	96.27
TIGR02258	179	2_5_ligase 2'-5' RNA ligase. This protein family c	96.23
PRK15124	176	2'-5' RNA ligase; Provisional	94.38
COG1514	180	LigT 2'-5' RNA ligase [Translation, ribosomal stru	93.47
PF10469	209	AKAP7_NLS: AKAP7 2'5' RNA ligase-like domain; Inte	92.91
PF02834	87	LigT_PEase: LigT like Phosphoesterase; InterPro: I	90.98
PF08975	118	2H-phosphodiest: Domain of unknown function (DUF18	80.61

>PF13563 2_5_RNA_ligase2: 2'-5' RNA ligase superfamily; PDB: 1IUH_A

Probab=96.65  E-value=0.0011  Score=52.63  Aligned_cols=95  Identities=20%  Similarity=0.150  Sum_probs=62.5

Q ss_pred             ceEeEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCcceEEEeEEEEcC--CcceEeeeeccCCCChHHHHHHHHHhCC
Q 024556          156 YHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVLDRVILTS--TGVLLGCWQVISGTDPMTIRAKLRTALP  233 (266)
Q Consensus       156 YH~TvFHaSHh~dPvpat~~ei~~E~~av~~v~~~~cPi~~~leRVV~ts--SGvlL~cwqv~~gtdp~~iR~~LR~alP  233 (266)
                      .|+|++......+..       ++-.++++.++++.-|+++.++++-.-.  ++ +|.+ .+........|+++|.++++
T Consensus        26 pHITL~~~~~~~~~~-------~~~~~~l~~~~~~~~~f~l~l~~~~~F~~~~~-vi~l-~~~~~~~L~~L~~~l~~~~~   96 (153)
T PF13563_consen   26 PHITLAFPFDIDDSL-------DELVEALARLAAGFPPFELRLDGFGSFPGKGR-VIFL-NVEPSPELEALHRALREALR   96 (153)
T ss_dssp             -EEEEEEEEE--GGG-------HHHHHHHHHHHHHS--EEEEEEEEEEESSSSS-SEEE-EEEE-HHHHHHHHHHHHHHH
T ss_pred             CEeEEEecCcccccH-------HHHHHHHHHHHccCCCeEEEEccEEEcCCCCC-EEEE-EcCCCHHHHHHHHHHHHHHH
Confidence            999999886544322       5556678888889999999999999884  45 3333 46555577999999999988


Q ss_pred             CCCccCcc-CceeeeehhhhhcCCCCC
Q 024556          234 NAPEKQLY-DPAILHTSFARLLGHPRA  259 (266)
Q Consensus       234 ~AP~kQ~~-d~~IlHTTLaRlL~Pp~~  259 (266)
                      ....++-. ++.+-|.|+||-+...+.
T Consensus        97 ~~~~~~~~~~~~~PHiTia~~~~~~~~  123 (153)
T PF13563_consen   97 PFGFKQDSYRPFRPHITIARRLSPKQA  123 (153)
T ss_dssp             HHHGGGGGGS----EEEEEEESS----
T ss_pred             HcCCccccCCCcceEEEEeccCCcchh
Confidence            77665533 789999999999987763

>PRK13679 hypothetical protein; Provisional

Probab=96.27  E-value=0.035  Score=46.83  Aligned_cols=122  Identities=16%  Similarity=0.257  Sum_probs=79.0

Q ss_pred             EEEEeecCcccchHHHHHHHHhcCCCCCcceeeeCCCcceEeEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCcceEE
Q 024556          118 RANVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIV  197 (266)
Q Consensus       118 Ra~Vl~lp~~~a~~i~~av~~vl~p~~d~~iw~q~~~~YH~TvFHaSHh~dPvpat~~ei~~E~~av~~v~~~~cPi~~~  197 (266)
                      +.+++.+|.+..+.+.+ +++.+.+.   .-|+ +|   |+|+-.      |-..++++++.=++++++++....|+++.
T Consensus         3 ~~iai~~p~~~~~~l~~-~~~~~~~~---~~~v-~p---HITL~f------~g~~~~~~~~~l~~~l~~~~~~~~pf~l~   68 (168)
T PRK13679          3 YGIVLFPSKKIQDFANS-YRKRYDPH---YALI-PP---HITLKE------PFEISDEQLDSIVEELRAIASETKPFTLH   68 (168)
T ss_pred             eEEEEcCCHHHHHHHHH-HHHhhCcc---cccC-CC---ceEEec------CCCCCHHHHHHHHHHHHHHHhcCCCEEEE
Confidence            56777777765545533 34555442   2253 44   999975      11234556666677888888899999999


Q ss_pred             EeEEEEcC--CcceEeeeeccCCCChHHHHHHHHHhCCCCCccCccCceeeeehhhhhcCCCC
Q 024556          198 LDRVILTS--TGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARLLGHPR  258 (266)
Q Consensus       198 leRVV~ts--SGvlL~cwqv~~gtdp~~iR~~LR~alP~AP~kQ~~d~~IlHTTLaRlL~Pp~  258 (266)
                      ++.+-.=+  +|++-+  .+....+...|+++|++.+=+. +.+  .+.+-|.||||.+++.+
T Consensus        69 l~~~~~F~~~~~vl~l--~~~~~~~L~~L~~~l~~~~~~~-~~~--~~f~PHiTlar~~~~~~  126 (168)
T PRK13679         69 VTKVSSFAPTNNVIYF--KVEKTEELEELHERLHSGDFYG-EAE--YAFVPHITIGQGLSDDE  126 (168)
T ss_pred             EeccccCCCCCCEEEE--EccCCHHHHHHHHHHHhccccc-ccC--CCCCCeEEeeCCCCcHH
Confidence            99985532  355533  3554456799999998775322 222  35889999999987543

>TIGR02258 2_5_ligase 2'-5' RNA ligase

Probab=96.23  E-value=0.027  Score=47.00  Aligned_cols=124  Identities=19%  Similarity=0.265  Sum_probs=73.3

Q ss_pred             EEeecCcccchHHHHHHHHhcCCCCCcceeeeCCCcceEeEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCcceEEEe
Q 024556          120 NVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVLD  199 (266)
Q Consensus       120 ~Vl~lp~~~a~~i~~av~~vl~p~~d~~iw~q~~~~YH~TvFHaSHh~dPvpat~~ei~~E~~av~~v~~~~cPi~~~le  199 (266)
                      +.+++|+++.+.|.+.-+++-..  .......+++.+|+|+.--    ..  .++++++.=.+++++++.  .|+++.++
T Consensus         5 iAl~~p~~~~~~l~~~~~~l~~~--~~~~r~~~~~~~HiTL~fl----g~--~~~~~~~~l~~~l~~~~~--~~f~l~l~   74 (179)
T TIGR02258         5 IAIDLPPEIREQLSRIQRKLKSP--LDGIKWVPPENLHITLKFL----GE--VDEEQVEELEDALAKIAE--PPFTLKLE   74 (179)
T ss_pred             EEecCCHHHHHHHHHHHHHhhcc--CCCcEECChHHCEEEEEEc----cC--CCHHHHHHHHHHHHHhcC--CCeEEEEe
Confidence            44567777666665554444312  2234556778899999532    11  223333333344445443  46889999


Q ss_pred             EEEEcCC----cceEeeeeccCCCChHHHHHHHHHhCCCC--CccCccCceeeeehhhhhcCCC
Q 024556          200 RVILTST----GVLLGCWQVISGTDPMTIRAKLRTALPNA--PEKQLYDPAILHTSFARLLGHP  257 (266)
Q Consensus       200 RVV~tsS----GvlL~cwqv~~gtdp~~iR~~LR~alP~A--P~kQ~~d~~IlHTTLaRlL~Pp  257 (266)
                      .+-.=+.    +++.+  .+....+...|++++++++...  +.+.  .+..-|.||||...+.
T Consensus        75 ~~~~F~~~~~~~vl~l--~~~~~~~L~~L~~~l~~~~~~~g~~~~~--~~f~PHiTlar~~~~~  134 (179)
T TIGR02258        75 GIGVFGNPKRPRVLWA--GVEQSEELTQLHADLERELAKLGFSKEE--RPFTPHITLARKKSGK  134 (179)
T ss_pred             eeeeCCCCCCCeEEEE--eeCCCHHHHHHHHHHHHHHHHcCCCCCC--CCcCCCEEEEEecCCc
Confidence            9877544    44432  2443346788889998887543  2122  3688999999987644

This protein family consists of bacterial and archaeal proteins with two tandem copies of Pfam domain pfam02834. Members for which activity has been measured perform a reversible, ATP-independent 2'-5'-ligation of what is presumably a non-phyiological substrate: half-tRNA splice intermediates from an intron-containing yeast tRNA. The physiological substrate(s) in prokaryotes may include small 2'-5'-link-containing oligonucleotides, perhaps with regulatory or biosynthetic roles.

>PRK15124 2'-5' RNA ligase; Provisional

Probab=94.38  E-value=0.36  Score=41.11  Aligned_cols=125  Identities=12%  Similarity=0.081  Sum_probs=70.1

Q ss_pred             eEEEE-eecCcccchHHHHHHHHhcCCCCCcceeeeCCCcceEeEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCcce
Q 024556          117 VRANV-LYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLK  195 (266)
Q Consensus       117 VRa~V-l~lp~~~a~~i~~av~~vl~p~~d~~iw~q~~~~YH~TvFHaSHh~dPvpat~~ei~~E~~av~~v~~~~cPi~  195 (266)
                      .|+-+ +++|++..+.+.+..++....  ...=|+ +++.+|+|+.-=.    .  ..++.++.-.+++.++  ...|++
T Consensus         5 ~RlFiAl~~p~~~~~~l~~~~~~~~~~--~~~rwv-~~~nlHiTL~FlG----~--v~~~~~~~l~~~l~~~--~~~pF~   73 (176)
T PRK15124          5 KRLFFAIDLPDEIRQQIIHWRATHFPP--EAGRPV-AAANLHLTLAFLG----E--VSAEKQQALSQLAGRI--RQPGFT   73 (176)
T ss_pred             eEEEEEeCCCHHHHHHHHHHHHHhccc--cCcccc-cccccEEEEEecC----C--CCHHHHHHHHHHHHhc--ccCCeE
Confidence            45544 467877777777766555421  122255 4778999985322    1  3344444444444444  457899


Q ss_pred             EEEeEEEEcCCcceEeeeeccCCC-ChHHHHHHHHHhCCCC---CccCccCceeeeehhhhhcCC
Q 024556          196 IVLDRVILTSTGVLLGCWQVISGT-DPMTIRAKLRTALPNA---PEKQLYDPAILHTSFARLLGH  256 (266)
Q Consensus       196 ~~leRVV~tsSGvlL~cwqv~~gt-dp~~iR~~LR~alP~A---P~kQ~~d~~IlHTTLaRlL~P  256 (266)
                      +.++++-.=+..-+|-+ .+..+. +...|-+.|++++-.+   +.+-   +..=|-||||..+.
T Consensus        74 l~l~~~g~Fp~prvlwl-g~~~~~~~L~~L~~~l~~~l~~~G~~~e~r---~f~PHiTLaR~~~~  134 (176)
T PRK15124         74 LTLDDAGQWPRSRVVWL-GMRQPPRGLLQLANMLRSQAARSGCYQSPQ---PFHPHITLLRDASR  134 (176)
T ss_pred             EEECcccCcCCCCEEEE-EcCCCCHHHHHHHHHHHHHHHHcCCCCCCC---CCCCCEeeccCCCC
Confidence            99998854443233311 133333 4566666666543211   2222   47789999997653

>COG1514 LigT 2'-5' RNA ligase [Translation, ribosomal structure and biogenesis]

Probab=93.47  E-value=0.61  Score=40.90  Aligned_cols=122  Identities=19%  Similarity=0.278  Sum_probs=80.6

Q ss_pred             EEeecCcccchHHHHHHHHhcCCCCCcce-eeeCCCcceEeEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCcceEEE
Q 024556          120 NVLYLSPKYSVPISDAVKRIFSPHFDKVI-WFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVL  198 (266)
Q Consensus       120 ~Vl~lp~~~a~~i~~av~~vl~p~~d~~i-w~q~~~~YH~TvFHaSHh~dPvpat~~ei~~E~~av~~v~~~~cPi~~~l  198 (266)
                      +.+.+|+++++.|.++.+.+-...   ++ |+ +++.||+|+-+    +-.++..  .++.=++++++++... |+.+.+
T Consensus         5 iAl~~p~~i~~~i~~~~~~~~~~~---~~k~v-~~en~HiTL~f----lGev~e~--~~~~l~~~l~~i~~~~-~f~i~l   73 (180)
T COG1514           5 IALDPPAEIAERLARIRARLKGAR---AIKWV-EPENLHITLKF----LGEVDED--KADELIEALARIAAPE-PFPITL   73 (180)
T ss_pred             EEecCCHHHHHHHHHHHHhcCccc---ccccc-cccCceEEEEc----cCCcCch--HHHHHHHHHHHhhcCC-ceEEEE
Confidence            445667777888877777665432   44 55 56679999964    3334333  2333347888888888 999999


Q ss_pred             eEEEEc-CCcceEeeeeccCCC-ChHHHHHHHHHhCCCC---CccCccCceeeeehhhhhcC
Q 024556          199 DRVILT-STGVLLGCWQVISGT-DPMTIRAKLRTALPNA---PEKQLYDPAILHTSFARLLG  255 (266)
Q Consensus       199 eRVV~t-sSGvlL~cwqv~~gt-dp~~iR~~LR~alP~A---P~kQ~~d~~IlHTTLaRlL~  255 (266)
                      +.+-.= +.+.---.|.=..++ +...|.+.+++.+=++   |++.   +..=|.|+||+.+
T Consensus        74 ~g~g~F~~~~~~rvi~~~v~~~~~L~~L~~~l~~~~~~~g~~~~~r---~F~PHvTl~r~k~  132 (180)
T COG1514          74 DGAGSFPNPRRPRVIWVGVEETEELRALAEELERALARLGLRPEER---PFVPHVTLARVKS  132 (180)
T ss_pred             eeEcccCCCCCCcEEEEcCCCcHHHHHHHHHHHHHHHhcCCCCCCC---CcCCCEEEEeecc
Confidence            998543 346666666333444 3677778887664444   2233   5788999999998

>PF10469 AKAP7_NLS: AKAP7 2'5' RNA ligase-like domain; InterPro: IPR019510 This entry represents the N-terminal nuclear localisation signal-containing domain found in the cyclic AMP-dependent protein kinase A (PKA) anchor protein, AKAP7

Probab=92.91  E-value=0.68  Score=40.09  Aligned_cols=130  Identities=19%  Similarity=0.136  Sum_probs=79.8

Q ss_pred             EEEEeec-CcccchHHHHHHHHhcCCCCCc-ceeeeCCCcceEeEeecCCCCCCCCCChHHHHHHHHHHHHHHhh-----
Q 024556          118 RANVLYL-SPKYSVPISDAVKRIFSPHFDK-VIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAED-----  190 (266)
Q Consensus       118 Ra~Vl~l-p~~~a~~i~~av~~vl~p~~d~-~iw~q~~~~YH~TvFHaSHh~dPvpat~~ei~~E~~av~~v~~~-----  190 (266)
                      =++++|+ .+++...+.+.-.+++....+- .-++++|+.+|+|+..-+      =.+++|++.=.++++.+...     
T Consensus         3 hFl~ipl~~~~i~~~~~~fq~~v~~~~~~~~~~~~i~~~~lHlTL~vl~------L~~~~~i~~a~~~L~~~~~~i~~~~   76 (209)
T PF10469_consen    3 HFLCIPLNSPEIQEKFKEFQNEVLSKDPGLDESAFIPPEKLHLTLGVLS------LDTDEEIEKAKEALKSLKQEIKDQL   76 (209)
T ss_pred             eEEEEECCCHHHHHHHHHHHHHHHhhcCCCCHHHcCCcccceEEEEEee------CCCHHHHHHHHHHHHHHHHHHhhhc
Confidence            4688998 3355555555444455333332 446678999999988663      34455666666666666432     


Q ss_pred             --cCcceEEEeEEEEcCC-----cceEeeeeccC--C-CChHHHHHHHHHhCCCCCccCcc---CceeeeehhhhhcC
Q 024556          191 --LCPLKIVLDRVILTST-----GVLLGCWQVIS--G-TDPMTIRAKLRTALPNAPEKQLY---DPAILHTSFARLLG  255 (266)
Q Consensus       191 --~cPi~~~leRVV~tsS-----GvlL~cwqv~~--g-tdp~~iR~~LR~alP~AP~kQ~~---d~~IlHTTLaRlL~  255 (266)
                        .-|+++.++-+=.=..     -||-+-  +..  + .....+.+.|++.|-.+-=...-   +...+|.||++.-.
T Consensus        77 ~~~~~~~i~l~Gl~~f~~d~~~~~VLya~--v~~~~~~~~L~~l~~~l~~~f~~~Gl~~~~~~~~~~~~H~Tl~n~~~  152 (209)
T PF10469_consen   77 QNPPPLKITLKGLGYFNDDPSKARVLYAK--VSEDSNSERLQELANKLRERFQEAGLLVTDDRRFSFKPHITLMNTSY  152 (209)
T ss_pred             cCCCCceEEeeechhhCCCCCcceEEEEc--ccccchHHHHHHHHHHHHHHHHHcCCccccccCCCcceEEEEEeccc
Confidence              3788999987765555     566563  443  2 34566666676666554322211   13689999999876

This protein anchors PKA for its role in regulating PKA-mediated gene transcription in both somatic cells and oocytes []. This domain carries the nuclear localisation signal (NLS) KKRKK, that indicates the cellular destiny of this anchor protein []. Binding to the regulatory subunits RI and RII of PKA is mediated via the RI-RII subunit-binding domain at the C terminus.

>PF02834 LigT_PEase: LigT like Phosphoesterase; InterPro: IPR014051 This entry represents a domain found in a number of known and predicted phosphoesterases

Probab=90.98  E-value=0.85  Score=33.81  Aligned_cols=77  Identities=14%  Similarity=0.197  Sum_probs=50.6

Q ss_pred             eecCcccchHHHHHHHHhcCCCCCcce-eeeCCCcceEeEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCcceEEEeE
Q 024556          122 LYLSPKYSVPISDAVKRIFSPHFDKVI-WFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVLDR  200 (266)
Q Consensus       122 l~lp~~~a~~i~~av~~vl~p~~d~~i-w~q~~~~YH~TvFHaSHh~dPvpat~~ei~~E~~av~~v~~~~cPi~~~leR  200 (266)
                      +++|++..+.+.+..+++-.-..+-++ |. ++..+|+|+--=.-      .+++++.+=+++++.++...-|+.+.+++
T Consensus         1 i~~p~~~~~~L~~l~~~l~~~~~~~~~r~~-~~~~~HiTL~flg~------~~~~~~~~l~~~l~~~~~~~~~f~~~~~~   73 (87)
T PF02834_consen    1 IDLPEEIKEQLNQLQERLRQALPPLGIRWV-RPFNPHITLAFLGE------VPPDQLPELIEALANIASRFPPFTLTVDG   73 (87)
T ss_dssp             EE-THHHHHHHHHHHHHHHHHCCSCTEEEG-SCGGSEEEEEEEEE------ESHHHHHHHHHHHHHHHCCCB-EEEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHhhhccccCCccc-CCCCCeEEEEeCCC------CCHHHHHHHHHHHHhhhccCCCeEEEEeE
Confidence            356777677666655555422233455 77 99999999965431      12556666667888888888899999999


Q ss_pred             EEEcC
Q 024556          201 VILTS  205 (266)
Q Consensus       201 VV~ts  205 (266)
                      +.+=+
T Consensus        74 ~~~f~   78 (87)
T PF02834_consen   74 FGLFP   78 (87)
T ss_dssp             EEEEE
T ss_pred             EEEeC
Confidence            97653

These include bacterial and archaeal 2',5' RNA ligases, and a family of predicted phosphoesterases known as the YjcG family. The 2',5' RNA ligases perform a reversible, ATP-independent 2'-5'-ligation of what is presumably a non-phyiological substrate: half-tRNA splice intermediates from an intron-containing yeast tRNA []. The physiological substrate(s) in prokaryotes may include small 2',5'-link-containing oligonucleotides, perhaps with regulatory or biosynthetic roles. This domain contains a conserved HXTX motif which is thought to be important for catalytic activity, as it is in the related enzyme cyclic nucleotide phosphodiesterase (CPDase) []. In 2',5' RNA ligase this domain is duplicated, with the two conserved motifs forming the proposed active site, which is analogous to that of CPDase [].; PDB: 1VGJ_A 1VDX_A 2FYH_A 2D4G_A.

>PF08975 2H-phosphodiest: Domain of unknown function (DUF1868); InterPro: IPR015069 This family consist of hypothetical bacterial proteins

Probab=80.61  E-value=6  Score=33.23  Aligned_cols=65  Identities=17%  Similarity=0.316  Sum_probs=29.3

Q ss_pred             cceeeeCCCcceEeEeecCCCCCCCCCC-hHHH--HHHHHH-----HHHHHh--hcCcceEEEeEEEEcCCcceE
Q 024556          146 KVIWFQNSSLYHFSMFHASHHISPVPAT-EDEI--EAEATA-----VRAVAE--DLCPLKIVLDRVILTSTGVLL  210 (266)
Q Consensus       146 ~~iw~q~~~~YH~TvFHaSHh~dPvpat-~~ei--~~E~~a-----v~~v~~--~~cPi~~~leRVV~tsSGvlL  210 (266)
                      ++.=+.++++||.|+|---...+=.+.- +.++  +.-++.     .+++.+  -.-|+++.+.+.-+.++|.+|
T Consensus        44 ~k~a~lP~sS~HMTVf~Gv~e~~R~~~~WP~~l~~d~~l~~~t~~~~~rL~~f~~~~~f~m~v~~~~~~p~g~~l  118 (118)
T PF08975_consen   44 DKLAFLPPSSYHMTVFEGVIESRREPGFWPADLPLDAPLQECTRYFAERLKGFPLPGPFRMRVTRTGMRPQGIVL  118 (118)
T ss_dssp             GGEEE--GGG-EEEEEEEEETT--STTSS-TTS-TT--HHHHHHHHHHHGGG--------EEE--EEEETTEEEE
T ss_pred             cceEecCcchhhhhhhccccccccCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCCeEEEEEecccccccccC
Confidence            4455689999999999877555433311 1111  111111     122222  155889999889999998775

; PDB: 2FSQ_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	266
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 4e-04
 Identities = 43/268 (16%), Positives = 74/268 (27%), Gaps = 64/268 (23%)

Query: 34  SFFHMALQNSSQNYPSSGGITSHSHIPNGERRARLYDKMARD----LDD-----HGAAFL 84
              +    N +     S  I    H    E R  L  K   +    L +        AF 
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN 263

Query: 85  KQGETSQSLLLSDIFTLKDGSVT---PVHKAANPPVRANVLYLSPKYSVPISDAVKRIFS 141
                 + LL     T +   VT         +  +  + + L+P          K +  
Sbjct: 264 LS---CKILL-----TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV-------KSLLL 308

Query: 142 PHFDKVIWFQNSSL---------YHFSMFHASHHISPVPATED-----EIEAEATAVRAV 187
               K +  +   L            S+   S  I    AT D       +   T + + 
Sbjct: 309 ----KYLDCRPQDLPREVLTTNPRRLSIIAES--IRDGLATWDNWKHVNCDKLTTIIESS 362

Query: 188 AEDLCP---------LKIVLDRVILTSTGVLLGCWQVISGTDPMTIRAKL--RTALPNAP 236
              L P         L +      +  T +L   W  +  +D M +  KL   + +    
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIP-TILLSLIWFDVIKSDVMVVVNKLHKYSLV---- 417

Query: 237 EKQLYDPAI-LHTSFARLLGHPRASPTV 263
           EKQ  +  I + + +  L         +
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYAL 445

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	266
1vgj_A	184	Hypothetical protein PH0099; alpha+beta, LIGT-like	97.84
2vfk_A	205	AKAP18 delta; APO, hydrolase; HET: AMP; 1.50A {Hom	97.55
2d4g_A	171	Hypothetical protein BSU11850; beta barrel, alpha	97.14
1iuh_A	198	2'-5' RNA ligase; riken structural genomics/proteo	96.68
1jh6_A	189	Cyclic phosphodiesterase; ADP-ribose 1'',2''-cycli	96.56
2fsq_A	243	ATU0111 protein; alpha-beta barrel, structural gen	93.25

>1vgj_A Hypothetical protein PH0099; alpha+beta, LIGT-like, structural genomics, ligase; 1.94A {Pyrococcus horikoshii} PDB: 1vdx_A 2fyh_A

Probab=97.84  E-value=7.7e-05  Score=60.30  Aligned_cols=126  Identities=11%  Similarity=0.106  Sum_probs=86.0

Q ss_pred             EEEeecCcccchHHHHHHHHhcCCCCCcceeeeCCCcceEeEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCcceEEE
Q 024556          119 ANVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVL  198 (266)
Q Consensus       119 a~Vl~lp~~~a~~i~~av~~vl~p~~d~~iw~q~~~~YH~TvFHaSHh~dPvpat~~ei~~E~~av~~v~~~~cPi~~~l  198 (266)
                      ++.+++|+++.+.|.+.-+++. +. +..+...+|+.+|+|+..-..      ..++++++=.++++++++..-|+++.+
T Consensus         4 Fial~~p~~~~~~l~~~~~~l~-~~-~~~~~~v~~~~lHiTL~flg~------~~~~~~~~l~~~l~~~~~~~~pf~l~l   75 (184)
T 1vgj_A            4 FIAIDVNESVRDSLVRAQDYIG-SK-EAKIKFVERENLHITLKFLGE------ITEEQAEEIKNILKKIAEKYKKHEVKV   75 (184)
T ss_dssp             EEEEECCHHHHHHHHHHHHHHC-SS-SEEEEECCGGGCEEEEEEEES------CCHHHHHHHHHHHHHHHTTSBCEEEEE
T ss_pred             EEEEcCCHHHHHHHHHHHHHHh-hc-CCCcEecCccccEEEEEeecC------CCHHHHHHHHHHHHHHHccCCCeEEEE
Confidence            3556778877777766666553 22 324555678889999975432      235566666678888888889999999


Q ss_pred             eEEEEcCC----cceEeeeeccCCCChHHHHHHHHHhCCCC--CccCccCceeeeehhhhhcCCC
Q 024556          199 DRVILTST----GVLLGCWQVISGTDPMTIRAKLRTALPNA--PEKQLYDPAILHTSFARLLGHP  257 (266)
Q Consensus       199 eRVV~tsS----GvlL~cwqv~~gtdp~~iR~~LR~alP~A--P~kQ~~d~~IlHTTLaRlL~Pp  257 (266)
                      +.+-.=+.    +|+-+  .+..+.+...|++++++++...  +...   +..-|.||||...+.
T Consensus        76 ~g~g~F~~~~~p~vl~~--~v~~~~~L~~L~~~l~~~l~~~g~~~~~---~f~PHiTLar~~~~~  135 (184)
T 1vgj_A           76 KGIGVFPNPNYIRVIWA--GIENDEIIREMAREIEDELAKLGFKKEG---NFVAHITLGRVKFVK  135 (184)
T ss_dssp             EEEEEEECSSSEEEEEE--EEETCHHHHHHHHHHHHHHHTTTCCCCC---CCCCEEEEEEEEEES
T ss_pred             eeEeeCCCCCCCcEEEE--EecCCHHHHHHHHHHHHHHHHcCCCCCC---CccceEEEEeecccC
Confidence            99876554    23322  2455555688999998887543  2222   678899999987644

>2vfk_A AKAP18 delta; APO, hydrolase; HET: AMP; 1.50A {Homo sapiens} PDB: 2vfl_A* 2vfy_A

Probab=97.55  E-value=0.00041  Score=57.23  Aligned_cols=130  Identities=12%  Similarity=0.107  Sum_probs=83.6

Q ss_pred             CeEEEE-eecCc-ccchHHHHHHHHhcCCCCC-cceeeeCCCcceEeEeecCCCCCCCCCChHHHHHHHHHHHHHHhhc-
Q 024556          116 PVRANV-LYLSP-KYSVPISDAVKRIFSPHFD-KVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDL-  191 (266)
Q Consensus       116 PVRa~V-l~lp~-~~a~~i~~av~~vl~p~~d-~~iw~q~~~~YH~TvFHaSHh~dPvpat~~ei~~E~~av~~v~~~~-  191 (266)
                      +.|+-+ +++|+ ++.+.|.+.-+++..-..+ ..-|+ +++.+|+|+.--.-      .+++++++=.+++++++... 
T Consensus         2 ~~r~Fial~~~~~~~~~~l~~~~~~l~~~~~~~~~~~v-~~~~~HiTL~flg~------~~~~~~~~l~~~l~~~~~~~~   74 (205)
T 2vfk_A            2 QPNYFLSIPITNKKITAGIKVLQNSILRQDNRLTKAMV-GDGSFHITLLVMQL------LNEDEVNIGTDALLELKPFVE   74 (205)
T ss_dssp             CCCEEEEEECCCHHHHHHHHHHHHHHHHHCGGGGGGBC-CTTCCEEEEEEECC------CSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEcCCHHHHHHHHHHHHHHHhcCcchHHHhC-CcCccEEEEEEEEc------CCHHHHHHHHHHHHHHHHHHH
Confidence            345555 78887 6777776666665421011 12354 57789999964422      23555665566777776655 


Q ss_pred             -----CcceEEEeEEEEcCCcceEeeeeccCC---CChHHHHHHHHHhCCCCC--ccCccCceeeeehhhhhcC
Q 024556          192 -----CPLKIVLDRVILTSTGVLLGCWQVISG---TDPMTIRAKLRTALPNAP--EKQLYDPAILHTSFARLLG  255 (266)
Q Consensus       192 -----cPi~~~leRVV~tsSGvlL~cwqv~~g---tdp~~iR~~LR~alP~AP--~kQ~~d~~IlHTTLaRlL~  255 (266)
                           -|+++.++.+-.=+.+||-+.  +..+   .....|+++++++|..+-  .++ ..+..-|.||||.-.
T Consensus        75 ~~~~~~pf~l~l~g~~~F~~~vl~~~--v~~~~~~~~L~~L~~~l~~~~~~~g~~~~~-~~~f~PHiTlar~~~  145 (205)
T 2vfk_A           75 EILEGKHLTLPFHGIGTFQGQVGFVK--LADGDHVSALLEIAETAKRTFQEKGILAGE-SRTFKPHLTFMKLSK  145 (205)
T ss_dssp             HHTTTSCCEEEEEEEEEETTTEEEEE--ECCSHHHHHHHHHHHHHHHHHHTTTCCBCC-SSCCCCCEEEEEGGG
T ss_pred             HHhCCCCcEEEEechhhCCCcEEEEe--ecccccHHHHHHHHHHHHHHHHHcCCCcCC-CCCcceEEEEEeccc
Confidence                 899999999977766655333  4333   246888888888865432  111 256889999999874

>2d4g_A Hypothetical protein BSU11850; beta barrel, alpha helix, structural genomics, unknown function; 2.30A {Bacillus subtilis}

Probab=97.14  E-value=0.001  Score=53.17  Aligned_cols=117  Identities=17%  Similarity=0.203  Sum_probs=78.8

Q ss_pred             EEeecCcccchHHHHHHHHhcCCCCCcceeeeCCCcceEeEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCcceEEEe
Q 024556          120 NVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVLD  199 (266)
Q Consensus       120 ~Vl~lp~~~a~~i~~av~~vl~p~~d~~iw~q~~~~YH~TvFHaSHh~dPvpat~~ei~~E~~av~~v~~~~cPi~~~le  199 (266)
                      +.+.+|+++.+.|.+.-+++ .+   ..-|+.+    |+|+..-..      ..++++++=.+++++++++.-|+++.++
T Consensus         5 iai~~~~~~~~~l~~~~~~~-~~---~~~~v~p----HiTL~f~g~------~~~~~~~~l~~~l~~~~~~~~pf~l~l~   70 (171)
T 2d4g_A            5 IVLFPSKKLQDLANSYRKRY-DP---SYSLIPP----HLTLRASFE------CAEEKADQLVSHLRNIAKESHPLVLKMT   70 (171)
T ss_dssp             EEBCCCHHHHHHHHHHHHHH-CG---GGGTSCS----CBCCSSCEE------CCGGGHHHHHHHHHHHHHTCCCEEEEEE
T ss_pred             EEEeCCHHHHHHHHHHHHHh-Cc---ccCCCCC----eEEeecCCc------CChHHHHHHHHHHHHHHccCCCEEEEEC
Confidence            45677777777776665554 33   1226544    999975432      1234455556788888889999999999


Q ss_pred             EEEEcCCc--ceEeeeeccCCCChHHHHHHHHHhCCCCCccCccCceeeeehhhhhcC
Q 024556          200 RVILTSTG--VLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARLLG  255 (266)
Q Consensus       200 RVV~tsSG--vlL~cwqv~~gtdp~~iR~~LR~alP~AP~kQ~~d~~IlHTTLaRlL~  255 (266)
                      ++-.=+.+  |+.+  .+....+...|++++++++...+.+   .+..-|-||||...
T Consensus        71 ~~g~F~~~~~vl~l--~~~~~~~L~~L~~~l~~~~~~~~~~---~~f~PHiTLar~~~  123 (171)
T 2d4g_A           71 KYSSFAPVNNVIYI--KAEPTEELKTLNEKLYTGVLAGEQE---YNFVPHVTVGQNLS  123 (171)
T ss_dssp             EEEECTTTCCCEEE--EECCCHHHHHHHHHTTSGGGCSCCC---SCCCCEEEEECSCC
T ss_pred             CcEEeCCCCcEEEE--EccCChHHHHHHHHHHhcccccccC---CCCCCeEEeecCCC
Confidence            99776533  4433  2444446799999999998765433   35788999999764

>1iuh_A 2'-5' RNA ligase; riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: d.61.1.2

Probab=96.68  E-value=0.0055  Score=50.90  Aligned_cols=124  Identities=14%  Similarity=0.183  Sum_probs=78.5

Q ss_pred             EEeecCcccchHHHHHHHHhcCCCCCcceeeeCCCcceEeEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCcceEEEe
Q 024556          120 NVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVLD  199 (266)
Q Consensus       120 ~Vl~lp~~~a~~i~~av~~vl~p~~d~~iw~q~~~~YH~TvFHaSHh~dPvpat~~ei~~E~~av~~v~~~~cPi~~~le  199 (266)
                      +.+.+|+++.+.|.+.-+++- ...+ .=|+. ++.+|+|+..-..      ..++++++=.+++++++++.-|+++.++
T Consensus         5 ial~~p~~~~~~l~~~~~~l~-~~~~-~r~v~-~~~~HiTL~flge------v~~~~~~~l~~~l~~~~~~~~pf~l~l~   75 (198)
T 1iuh_A            5 YAVFLPEEVRAALVEAQTKVR-PFRG-WKPVP-PHQLHLTLLFLGE------RPEEELPDYLALGHRLARLEAPFRARLR   75 (198)
T ss_dssp             EEEECCHHHHHHHHHHHGGGT-TCTT-EEECC-GGGCEEEEEEEEE------CCGGGHHHHHHHHHHHHHHSCCEEEEEE
T ss_pred             EEEeCCHHHHHHHHHHHHHhh-hhcC-CcccC-CCCCEEEEEeCCc------CCHHHHHHHHHHHHHHhccCCCeEEEEc
Confidence            456777777777755554442 2111 22654 7779999964321      2234566556788888888999999999


Q ss_pred             EEEEcCC----cceEeeeeccCCCChHHHHHHHHHhCCCC--------CccCccCceeeeehhhhhcCCC
Q 024556          200 RVILTST----GVLLGCWQVISGTDPMTIRAKLRTALPNA--------PEKQLYDPAILHTSFARLLGHP  257 (266)
Q Consensus       200 RVV~tsS----GvlL~cwqv~~gtdp~~iR~~LR~alP~A--------P~kQ~~d~~IlHTTLaRlL~Pp  257 (266)
                      .+-.=+.    +|+-+  .+ ...+...|++++++++...        +...  .+..=|.||||...+.
T Consensus        76 g~g~F~~~~~p~vl~l--~v-~~~~L~~L~~~l~~~l~~~~g~~~~~~~~~~--~~f~PHiTLar~~~~~  140 (198)
T 1iuh_A           76 GTGYFPNEGTPRVWFA--KA-EAEGFLRLAEGLRAGVEELLGEEAVRIPGWD--KPFKPHITLARRKAPA  140 (198)
T ss_dssp             EEEEESSSSSCSEEEE--EE-ECHHHHHHHHHHHHHHHHHHGGGGGGSTTTT--SCCCCEEEEEEESSCC
T ss_pred             ceEECCCCCCCCEEEE--EC-CCHHHHHHHHHHHHHHHHhcCCCcccccCCC--CCCCCcEEeEeccCcc
Confidence            9977665    34422  23 3335677777777665432        1111  3578899999998644

>1jh6_A Cyclic phosphodiesterase; ADP-ribose 1'',2''-cyclic phosphate, RNA processing, 2',3'-C nucleotide phosphodiesterase, hydrolase; 1.80A {Arabidopsis thaliana} SCOP: d.61.1.1 PDB: 1fsi_A 1jh7_A*

Probab=96.56  E-value=0.0075  Score=50.10  Aligned_cols=119  Identities=12%  Similarity=0.062  Sum_probs=78.0

Q ss_pred             CCCeEEEEeecCcccchHHHHHHHHhcCCCCCcceeeeCCCcceEeEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCc
Q 024556          114 NPPVRANVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCP  193 (266)
Q Consensus       114 ~vPVRa~Vl~lp~~~a~~i~~av~~vl~p~~d~~iw~q~~~~YH~TvFHaSHh~dPvpat~~ei~~E~~av~~v~~~~cP  193 (266)
                      +...|++++..|+++.+.+.+..+++-. ..    |. ++..+|+|+      +.+++...+   .=.+++++++++.-|
T Consensus         5 ~~~~~~f~~~pp~~~~~~l~~~~~~l~~-~~----~~-~~~~~HiTL------lG~~~~~~~---~l~~~L~~~a~~~~p   69 (189)
T 1jh6_A            5 KKDVYSVWALPDEESEPRFKKLMEALRS-EF----TG-PRFVPHVTV------AVSAYLTAD---EAKKMFESACDGLKA   69 (189)
T ss_dssp             CCEEEEEEEEECTTTHHHHHHHHHHHHH-HH----TC-CCCCCCEEE------EEEEEECHH---HHHHHHHHHHHTCBC
T ss_pred             CCCcEEEEEECCHHHHHHHHHHHHHHHH-Hc----CC-CCCCCEEEE------eCCCCCCHH---HHHHHHHHHHhhCCC
Confidence            3446777776688777777766655521 11    22 678999999      334433333   345677788888899


Q ss_pred             ceEEEeEEEE--cCCcceEeeeeccCCCChHHHHHHHHHhCCCCCccCccCceeeeehhhhh
Q 024556          194 LKIVLDRVIL--TSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARL  253 (266)
Q Consensus       194 i~~~leRVV~--tsSGvlL~cwqv~~gtdp~~iR~~LR~alP~AP~kQ~~d~~IlHTTLaRl  253 (266)
                      +.+.++.|=.  ..-.||-+.  |..+.+...|.+++++++...|.+    +..=|.||||.
T Consensus        70 f~l~l~g~g~~~~~~rvlw~~--v~~~~~L~~L~~~v~~~~g~~~~~----~f~PHlTLar~  125 (189)
T 1jh6_A           70 YTATVDRVSTGTFFFQCVFLL--LQTTPEVMEAGEHCKNHFNCSTTT----PYMPHLSLLYA  125 (189)
T ss_dssp             EEEEEEEEEEEEETTEEEEEE--ECCCHHHHHHHHHHHHHTTCCCCS----CCCCEEEEECC
T ss_pred             eEEEEcceeccCccceEEEEe--ecCCHHHHHHHHHHHHHhCCCCCC----CCCCeEEEEEe
Confidence            9999999865  112232222  334445688999999997665543    57889999985

>2fsq_A ATU0111 protein; alpha-beta barrel, structural genomics, PSI, protein structu initiative, midwest center for structural genomics; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: d.61.1.4

Probab=93.25  E-value=0.25  Score=44.33  Aligned_cols=155  Identities=14%  Similarity=0.159  Sum_probs=83.4

Q ss_pred             cccccccccCCCceecccccCCCCeEEEEeecCccc--chHHHHHHHHhcCCCCCcceeeeCCCcceEeEeecCCCCC--
Q 024556           93 LLLSDIFTLKDGSVTPVHKAANPPVRANVLYLSPKY--SVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHIS--  168 (266)
Q Consensus        93 l~l~DlF~~~dG~v~P~l~~~~vPVRa~Vl~lp~~~--a~~i~~av~~vl~p~~d~~iw~q~~~~YH~TvFHaSHh~d--  168 (266)
                      ..++..|+- ||...|-      |===+|-|++...  ...+.++-+++..-.+.+..=+.++++||.|+|----..+  
T Consensus        25 ~~~g~Kf~~-~G~~~pF------pGnTvI~~l~~~s~~~~~l~~iq~~L~~~~~~~~~~~lPpsS~HMTvfdgv~e~~r~   97 (243)
T 2fsq_A           25 RHLGSRFSA-EGEFLPE------PGNTVVCHLVEGSQTESAIVSTRQRFLDMPEASQLAFTPVSSLHMTVFQGVIESRRA   97 (243)
T ss_dssp             TTBTTTBCT-TSCBCCC------CEEEEEEEBCTTSHHHHHHHHHHHHHHTSGGGGGEEECCGGGCEEEEEEEEETTCCS
T ss_pred             cccccCCCC-CCCEecC------CCCeEEEecCCCChHHHHHHHHHHHHHhccccCceeeCCchhhhhhhcccccccccc
Confidence            344556653 7755553      2223455666522  2333222222221112344557799999999997432222  


Q ss_pred             --CCCC---ChHHHHHHHHHHH-HHH--hhcCcceEEEeEEEEcCCcceEeeeeccCCCChHHHHHHHHHhCCCCCccCc
Q 024556          169 --PVPA---TEDEIEAEATAVR-AVA--EDLCPLKIVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQL  240 (266)
Q Consensus       169 --Pvpa---t~~ei~~E~~av~-~v~--~~~cPi~~~leRVV~tsSGvlL~cwqv~~gtdp~~iR~~LR~alP~AP~kQ~  240 (266)
                        .=|+   .+..+..--+.+. ++.  ....|+++.+.-+  .++|+.|.-..-..-.-...+|++|.+++.---+.| 
T Consensus        98 ~~~wP~~L~~d~~l~~~~~~~~~~l~~~~~~~p~~~~v~~l--~~~~v~L~Pade~~~~~L~~~R~~l~q~lGi~~p~h-  174 (243)
T 2fsq_A           98 LPYWPQTLPLDTPIDAVTDYYRDRLSTFPTLPAFNMRVTGL--RPVGMVMKGATAEDDSIVALWRDTFADFFGYRHPDH-  174 (243)
T ss_dssp             TTSSCTTSCTTCCHHHHHHHHHHHGGGCCCCCCCCEEEEEE--ETTEEEEEESSHHHHHHHHHHHHHHHHHHTCCCTTG-
T ss_pred             CCCCCccCcccchHHHHHHHHHHHHhcccCCCCeEEEEecc--ccceEEEecCCHHHHHHHHHHHHHHHHHhCCCCCCC-
Confidence              1111   1222332222222 221  2346888888877  455655443211111225699999999887655545 


Q ss_pred             cCceeeeehhhhhcCCCC
Q 024556          241 YDPAILHTSFARLLGHPR  258 (266)
Q Consensus       241 ~d~~IlHTTLaRlL~Pp~  258 (266)
                       |..-.|-|||=++.++.
T Consensus       175 -d~y~fHITLgY~~~~l~  191 (243)
T 2fsq_A          175 -DTYEFHITLSYIVSWFE  191 (243)
T ss_dssp             -GGCCEEEECEEESSCBC
T ss_pred             -cceEEEEEEEeccCCCC
Confidence             78999999999887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	266
d1iuha_	183	2'-5' RNA ligase LigT {Thermus thermophilus [TaxId	96.59
d1jh6a_	181	tRNA splicing product Appr>p cyclic nucleotide pho	95.07
d2fsqa1	232	Putative phosphoesterase Atu0111 {Agrobacterium tu	94.5

>d1iuha_ d.61.1.2 (A:) 2'-5' RNA ligase LigT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: LigT-like
superfamily: LigT-like
family: 2'-5' RNA ligase LigT
domain: 2'-5' RNA ligase LigT
species: Thermus thermophilus [TaxId: 274]

Probab=96.59  E-value=0.0029  Score=49.43  Aligned_cols=127  Identities=13%  Similarity=0.117  Sum_probs=75.3

Q ss_pred             EeecCcccchHHHHHHHHhcCCCCCcceeeeCCCcceEeEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCcceEEEeE
Q 024556          121 VLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVLDR  200 (266)
Q Consensus       121 Vl~lp~~~a~~i~~av~~vl~p~~d~~iw~q~~~~YH~TvFHaSHh~dPvpat~~ei~~E~~av~~v~~~~cPi~~~leR  200 (266)
                      -+++|++..+.|.+.-++ +.+.. +.=|+ +++.||+|+.--      -..++++++.=.+++++++....|+.+.+++
T Consensus         6 al~~p~~~~~~l~~~~~~-l~~~~-~~r~~-~~~~lHiTL~fl------g~~~~~~~~~l~~~l~~~~~~~~pf~l~~~~   76 (183)
T d1iuha_           6 AVFLPEEVRAALVEAQTK-VRPFR-GWKPV-PPHQLHLTLLFL------GERPEEELPDYLALGHRLARLEAPFRARLRG   76 (183)
T ss_dssp             EEECCHHHHHHHHHHHGG-GTTCT-TEEEC-CGGGCEEEEEEE------EECCGGGHHHHHHHHHHHHHHSCCEEEEEEE
T ss_pred             EEcCCHHHHHHHHHHHHH-ccccc-ccccC-CcccCEEEEEcC------CCCCHHHHHHHHHHHHHHHhcCCCeEEEecc
Confidence            356677666666444444 32322 22265 678899999521      1234566777778999999999999999999


Q ss_pred             EEEcCCcc-eEeeeeccCCCChHHHHHHHHHhCCCC--------CccCccCceeeeehhhhhcCCCC
Q 024556          201 VILTSTGV-LLGCWQVISGTDPMTIRAKLRTALPNA--------PEKQLYDPAILHTSFARLLGHPR  258 (266)
Q Consensus       201 VV~tsSGv-lL~cwqv~~gtdp~~iR~~LR~alP~A--------P~kQ~~d~~IlHTTLaRlL~Pp~  258 (266)
                      +-.=+.+. -...|.+..+.+...+..+|++++..+        |+..  .+..=|-||||.-.+++
T Consensus        77 ~~~f~~~~~~~v~~~~~~~~~~~~L~~~l~~~l~~~~~~~~~~~~~~~--r~f~PHITlar~~~~~~  141 (183)
T d1iuha_          77 TGYFPNEGTPRVWFAKAEAEGFLRLAEGLRAGVEELLGEEAVRIPGWD--KPFKPHITLARRKAPAP  141 (183)
T ss_dssp             EEEESSSSSCSEEEEEEECHHHHHHHHHHHHHHHHHHGGGGGGSTTTT--SCCCCEEEEEEESSCCC
T ss_pred             cccCCCCCCcEEEEEecCChHHHHHHHHHHHHHHHHhhhhccCCCccC--CCcCCCEEEEeEcCCch
Confidence            97655442 222333344434444444444443322        2111  24666889999866554

>d1jh6a_ d.61.1.1 (A:) tRNA splicing product Appr>p cyclic nucleotide phosphodiesterase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: LigT-like
superfamily: LigT-like
family: tRNA splicing product Appr>p cyclic nucleotide phosphodiesterase
domain: tRNA splicing product Appr>p cyclic nucleotide phosphodiesterase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.07  E-value=0.089  Score=40.68  Aligned_cols=113  Identities=12%  Similarity=0.073  Sum_probs=72.3

Q ss_pred             eecCcccchHHHHHHHHhcCCCCCcceeeeCCCcceEeEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCcceEEEeEE
Q 024556          122 LYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVLDRV  201 (266)
Q Consensus       122 l~lp~~~a~~i~~av~~vl~p~~d~~iw~q~~~~YH~TvFHaSHh~dPvpat~~ei~~E~~av~~v~~~~cPi~~~leRV  201 (266)
                      +-.|++...+|.++++++-.. +++. ++ +|   |+|+.--..      .+++   ...+.++.++...-|+.+.+++|
T Consensus        13 l~P~~~~~~~l~~l~~~l~~~-~~~~-~~-~p---HiTL~~~~~------~~~~---~~~~~l~~~~~~~~p~~~~~~~~   77 (181)
T d1jh6a_          13 ALPDEESEPRFKKLMEALRSE-FTGP-RF-VP---HVTVAVSAY------LTAD---EAKKMFESACDGLKAYTATVDRV   77 (181)
T ss_dssp             EEECTTTHHHHHHHHHHHHHH-HTCC-CC-CC---CEEEEEEEE------ECHH---HHHHHHHHHHHTCBCEEEEEEEE
T ss_pred             EECCHHHHHHHHHHHHHHHHh-hCCC-CC-CC---eEEEeecCc------CCHH---HHHHHHHHHHhhCCCeEEEeccc
Confidence            333555666666666555211 1111 22 23   999965321      1222   33455667777788999999999


Q ss_pred             EEcCCcceEeeeeccCCCChHHHHHHHHHhCCCCCccCccCceeeeehhhhh
Q 024556          202 ILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARL  253 (266)
Q Consensus       202 V~tsSGvlL~cwqv~~gtdp~~iR~~LR~alP~AP~kQ~~d~~IlHTTLaRl  253 (266)
                      ..-..+--...+.+....+...+++++++.+.....+.    ..=|.||||.
T Consensus        78 ~~~~~~~~~v~~~~~~~~~L~~l~~~l~~~~~~~~~~~----f~PHiTLa~~  125 (181)
T d1jh6a_          78 STGTFFFQCVFLLLQTTPEVMEAGEHCKNHFNCSTTTP----YMPHLSLLYA  125 (181)
T ss_dssp             EEEEETTEEEEEEECCCHHHHHHHHHHHHHTTCCCCSC----CCCEEEEECC
T ss_pred             ccCCCCceEEEEccCCCHHHHHHHHHHHHhcCcccCCC----CCCeEEEEec
Confidence            87666655556667665677999999999987665554    5568899974

>d2fsqa1 d.61.1.4 (A:6-237) Putative phosphoesterase Atu0111 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: LigT-like
superfamily: LigT-like
family: Atu0111-like
domain: Putative phosphoesterase Atu0111
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=94.50  E-value=0.047  Score=46.46  Aligned_cols=130  Identities=12%  Similarity=0.100  Sum_probs=69.2

Q ss_pred             EEeecCcc--cchHHHHHHHHhcCCCC-CcceeeeCCCcceEeEeecC--------C-CCCC-CCCChHHHHHHHHHHHH
Q 024556          120 NVLYLSPK--YSVPISDAVKRIFSPHF-DKVIWFQNSSLYHFSMFHAS--------H-HISP-VPATEDEIEAEATAVRA  186 (266)
Q Consensus       120 ~Vl~lp~~--~a~~i~~av~~vl~p~~-d~~iw~q~~~~YH~TvFHaS--------H-h~dP-vpat~~ei~~E~~av~~  186 (266)
                      +|-+++++  +...|.++ ++-+.-.. .+..-+-+|++||.|+|=--        + +.+. .-..-+++..+..+  +
T Consensus        38 iI~~i~~~s~~~~~l~~~-q~~l~~~~~~~~~~~LP~sSfHMTLfd~~n~~~r~~~~wP~~l~~d~~~~~~~~~~~~--r  114 (232)
T d2fsqa1          38 VVCHLVEGSQTESAIVST-RQRFLDMPEASQLAFTPVSSLHMTVFQGVIESRRALPYWPQTLPLDTPIDAVTDYYRD--R  114 (232)
T ss_dssp             EEEEBCTTSHHHHHHHHH-HHHHHTSGGGGGEEECCGGGCEEEEEEEEETTCCSTTSSCTTSCTTCCHHHHHHHHHH--H
T ss_pred             EEEecCCCchHHHHHHHH-HHHHHhcCcccceeeCChhhhhHHHhcccccccccCCCCCccCCcccCHHHHHHHHHH--H
Confidence            44566653  22344333 33333333 34445679999999999321        1 1111 22234455555433  3


Q ss_pred             HHhh--cCcceEEEeEEEEcCCcceEeeeeccCCC--ChHHHHHHHHHhCCCCCccCccCceeeeehhhhhcCCCC
Q 024556          187 VAED--LCPLKIVLDRVILTSTGVLLGCWQVISGT--DPMTIRAKLRTALPNAPEKQLYDPAILHTSFARLLGHPR  258 (266)
Q Consensus       187 v~~~--~cPi~~~leRVV~tsSGvlL~cwqv~~gt--dp~~iR~~LR~alP~AP~kQ~~d~~IlHTTLaRlL~Pp~  258 (266)
                      +-.-  ..++++.+..  +.+.|++|.-  +....  -...+|++|.+.+.-..+.+  |+...|-|||=+++...
T Consensus       115 l~~~~~~~~~~~~~~~--~~~~~v~L~p--~~e~d~~~L~~~R~~l~~l~gi~~~~h--~~Y~fHITLaY~l~~l~  184 (232)
T d2fsqa1         115 LSTFPTLPAFNMRVTG--LRPVGMVMKG--ATAEDDSIVALWRDTFADFFGYRHPDH--DTYEFHITLSYIVSWFE  184 (232)
T ss_dssp             GGGCCCCCCCCEEEEE--EETTEEEEEE--SSHHHHHHHHHHHHHHHHHHTCCCTTG--GGCCEEEECEEESSCBC
T ss_pred             HhcCCCCcceEEEEec--ccccEEEEec--CCHHHHHHHHHHHHHHHHHhccCCCCC--ceeEEEEEEEeccCCCC
Confidence            3332  3345554432  2233333222  11111  14668889999887776666  78999999999987543