Citrus Sinensis ID: 024579

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-----
MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK
cHHHHHHHHHccccHHHcccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccHHHHcccccccccccccccccccccHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccHHHHHHHHcccccc
ccHHHHcccHHccccHcccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEccHHHcccccccEcccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccHHHHHHHHcccccc
MATSAIQQSAFAGQTALRQSNEFVRKVgvadggritmrrtvksapqsiwygpdrpkylgpfseqtpsyltgefpgdygwdtaglsadpetfaKNRELEVIHSRWAMLGALgcvfpeilskngvkFGEAVWFKAGAQIFseggldylgnpnlihAQSILAIWACQVVLMGFVegyrigggplgegldplypggafdplgladdpdQFAELKVKELKNGRLAMFSMFGFFVQAIVTgkgpienlydhiadpvannawayatnfvpgk
matsaiqqsafagqtalrqsnEFVRKvgvadggritmrrtvksapqsiwygpdrpkYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK
MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIgggplgegldplypggAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK
**********************FVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFV***
**T******************************************************LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPG*
**************TALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK
***********************************************IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPG*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query265 2.2.26 [Sep-21-2011]
P27518265 Chlorophyll a-b binding p N/A no 1.0 1.0 0.924 1e-145
P12062265 Chlorophyll a-b binding p N/A no 1.0 1.0 0.913 1e-142
P27494265 Chlorophyll a-b binding p N/A no 1.0 1.0 0.901 1e-142
P27520265 Chlorophyll a-b binding p N/A no 1.0 1.0 0.898 1e-140
P12328264 Chlorophyll a-b binding p N/A no 0.996 1.0 0.898 1e-140
P14278265 Chlorophyll a-b binding p N/A no 1.0 1.0 0.901 1e-140
Q10HD0263 Chlorophyll a-b binding p yes no 0.992 1.0 0.898 1e-136
A2XJ35263 Chlorophyll a-b binding p N/A no 0.992 1.0 0.898 1e-136
P10049266 Chlorophyll a-b binding p N/A no 0.996 0.992 0.876 1e-134
P14279237 Chlorophyll a-b binding p N/A no 0.886 0.991 0.936 1e-129
>sp|P27518|CB21_GOSHI Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2 Back     alignment and function desciption
 Score =  513 bits (1320), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 245/265 (92%), Positives = 256/265 (96%)

Query: 1   MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
           MATSAIQQSAFAGQTAL+QSNE V K+G   GGR++MRRTVKSAP SIWYGPDRPKYLGP
Sbjct: 1   MATSAIQQSAFAGQTALKQSNELVCKIGAVGGGRVSMRRTVKSAPTSIWYGPDRPKYLGP 60

Query: 61  FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
           FS+Q PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPEILSK
Sbjct: 61  FSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSK 120

Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
           NGVKFGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR+GGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGP 180

Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
           LGEGLDP+YPGGAFDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIE
Sbjct: 181 LGEGLDPIYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 240

Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
           NL+DH+ADPVANNAWAYATNFVPGK
Sbjct: 241 NLFDHLADPVANNAWAYATNFVPGK 265
The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated.
Gossypium hirsutum (taxid: 3635)
>sp|P12062|CB26_PETSP Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1 Back     alignment and function description
>sp|P27494|CB23_TOBAC Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1 Back     alignment and function description
>sp|P27520|CB215_PEA Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1 Back     alignment and function description
>sp|P12328|CB21_LEMGI Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1 Back     alignment and function description
>sp|P14278|CB24_SOLLC Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1 Back     alignment and function description
>sp|Q10HD0|CB23_ORYSJ Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1 Back     alignment and function description
>sp|A2XJ35|CB23_ORYSI Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1 Back     alignment and function description
>sp|P10049|CB21_PINTH Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1 Back     alignment and function description
>sp|P14279|CB25_SOLLC Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query265
449453598265 PREDICTED: chlorophyll a-b binding prote 1.0 1.0 0.939 1e-145
255581778265 chlorophyll A/B binding protein, putativ 1.0 1.0 0.943 1e-145
224131818265 light-harvesting complex II protein Lhcb 1.0 1.0 0.939 1e-144
225447576265 PREDICTED: chlorophyll a-b binding prote 1.0 1.0 0.935 1e-143
3560529265 light harvesting chlorophyll A/B binding 1.0 1.0 0.932 1e-143
1345698265 RecName: Full=Chlorophyll a-b binding pr 1.0 1.0 0.924 1e-143
224064850265 light-harvesting complex II protein Lhcb 1.0 1.0 0.928 1e-142
118489455265 unknown [Populus trichocarpa x Populus d 1.0 1.0 0.924 1e-142
16805332265 chlorophyll a/b binding protein type II 1.0 1.0 0.924 1e-142
4741948265 Lhcb2 protein [Arabidopsis thaliana] 1.0 1.0 0.913 1e-142
>gi|449453598|ref|XP_004144543.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic-like [Cucumis sativus] gi|449511798|ref|XP_004164056.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 249/265 (93%), Positives = 258/265 (97%)

Query: 1   MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
           MATSAIQQSAFAGQTAL+QSNE VRKVG   G R TMRRTVKSAPQSIWYGPDRPKYLGP
Sbjct: 1   MATSAIQQSAFAGQTALKQSNELVRKVGALGGARFTMRRTVKSAPQSIWYGPDRPKYLGP 60

Query: 61  FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
           FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L+K
Sbjct: 61  FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAK 120

Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
           NGVKFGE+VWFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR+GGGP
Sbjct: 121 NGVKFGESVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGP 180

Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
           LGEGLDP+YPGGAFDPLGLADDPD FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE
Sbjct: 181 LGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240

Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
           NL+DH+ADPVANNAWAYATNFVPGK
Sbjct: 241 NLFDHVADPVANNAWAYATNFVPGK 265

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255581778|ref|XP_002531690.1| chlorophyll A/B binding protein, putative [Ricinus communis] gi|223528666|gb|EEF30681.1| chlorophyll A/B binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224131818|ref|XP_002321186.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa] gi|222861959|gb|EEE99501.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225447576|ref|XP_002271687.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic [Vitis vinifera] gi|147794485|emb|CAN71610.1| hypothetical protein VITISV_000630 [Vitis vinifera] Back     alignment and taxonomy information
>gi|3560529|gb|AAC34983.1| light harvesting chlorophyll A/B binding protein [Prunus persica] Back     alignment and taxonomy information
>gi|1345698|sp|P27518.2|CB21_GOSHI RecName: Full=Chlorophyll a-b binding protein 151, chloroplastic; AltName: Full=LHCII type II CAB-151; Short=LHCP; Flags: Precursor gi|452314|emb|CAA38025.1| chlorophyll ab binding protein [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|224064850|ref|XP_002301582.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa] gi|118486872|gb|ABK95270.1| unknown [Populus trichocarpa] gi|118488008|gb|ABK95825.1| unknown [Populus trichocarpa] gi|222843308|gb|EEE80855.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|118489455|gb|ABK96530.1| unknown [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information
>gi|16805332|gb|AAL29886.1|M97171_1 chlorophyll a/b binding protein type II [Glycine max] Back     alignment and taxonomy information
>gi|4741948|gb|AAD28771.1|AF134124_1 Lhcb2 protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query265
TAIR|locus:2042148265 LHCB2.1 "photosystem II light 0.996 0.996 0.852 5.1e-122
TAIR|locus:2044988265 LHCB2.2 "photosystem II light 1.0 1.0 0.841 2.8e-121
TAIR|locus:2089139266 LHCB2.3 "photosystem II light 1.0 0.996 0.842 4.6e-121
TAIR|locus:2019322267 CAB1 "chlorophyll A/B binding 0.981 0.973 0.723 3.4e-100
TAIR|locus:2019287267 CAB3 "chlorophyll A/B binding 0.981 0.973 0.723 5.6e-100
TAIR|locus:2019372267 CAB2 "chlorophyll A/B-binding 0.981 0.973 0.723 5.6e-100
TAIR|locus:2040934265 LHB1B2 "photosystem II light h 0.973 0.973 0.712 1.9e-99
UNIPROTKB|P12331261 CAB2R "Chlorophyll a-b binding 0.958 0.973 0.731 3.9e-99
UNIPROTKB|P12330265 CAB1R "Chlorophyll a-b binding 0.875 0.875 0.797 2.8e-98
TAIR|locus:2040944266 LHB1B1 "light-harvesting chlor 0.981 0.977 0.715 3.5e-98
TAIR|locus:2042148 LHCB2.1 "photosystem II light harvesting complex gene 2.1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1200 (427.5 bits), Expect = 5.1e-122, P = 5.1e-122
 Identities = 225/264 (85%), Positives = 239/264 (90%)

Query:     1 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGP 60
             MATSAIQQS+FAGQTAL+ SNE +RKVGV+ GGR+TMRRTVKS PQSIWYGPDRPKYLGP
Sbjct:     1 MATSAIQQSSFAGQTALKPSNELLRKVGVSGGGRVTMRRTVKSTPQSIWYGPDRPKYLGP 60

Query:    61 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
             FSE TPSYLTGE+PGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGC FPEILSK
Sbjct:    61 FSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSK 120

Query:   121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXX 180
             NGVKFGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWA QVVLMGF+EGYRI    
Sbjct:   121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGGGP 180

Query:   181 XXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
                         AFDPL LA+DP+ F+ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE
Sbjct:   181 LGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240

Query:   241 NLYDHIADPVANNAWAYATNFVPG 264
             NL+DH+ADPVANNAW+YATNFVPG
Sbjct:   241 NLFDHLADPVANNAWSYATNFVPG 264
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0009765 "photosynthesis, light harvesting" evidence=IEA
GO:0015979 "photosynthesis" evidence=ISS
GO:0016020 "membrane" evidence=IEA;IDA
GO:0016168 "chlorophyll binding" evidence=ISS
GO:0030076 "light-harvesting complex" evidence=ISS
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009535 "chloroplast thylakoid membrane" evidence=IDA
GO:0010287 "plastoglobule" evidence=IDA
GO:0009579 "thylakoid" evidence=IDA
GO:0009637 "response to blue light" evidence=IEP
GO:0010114 "response to red light" evidence=IEP
GO:0010218 "response to far red light" evidence=IEP
GO:0005794 "Golgi apparatus" evidence=RCA
TAIR|locus:2044988 LHCB2.2 "photosystem II light harvesting complex gene 2.2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089139 LHCB2.3 "photosystem II light harvesting complex gene 2.3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2019322 CAB1 "chlorophyll A/B binding protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2019287 CAB3 "chlorophyll A/B binding protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2019372 CAB2 "chlorophyll A/B-binding protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040934 LHB1B2 "photosystem II light harvesting complex gene B1B2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P12331 CAB2R "Chlorophyll a-b binding protein 2, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|P12330 CAB1R "Chlorophyll a-b binding protein 1, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2040944 LHB1B1 "light-harvesting chlorophyll-protein complex II subunit B1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P08222CB22_CUCSANo assigned EC number0.89800.77731.0N/Ano
P08221CB21_CUCSANo assigned EC number0.85890.87540.9098N/Ano
P06671CB22_MAIZENo assigned EC number0.76950.96980.9698N/Ano
P12328CB21_LEMGINo assigned EC number0.89810.99621.0N/Ano
P12329CB21_MAIZENo assigned EC number0.80970.96220.9732N/Ano
P27492CB21_TOBACNo assigned EC number0.76860.98110.9774N/Ano
P27493CB22_TOBACNo assigned EC number0.78570.98110.9811N/Ano
P10049CB21_PINTHNo assigned EC number0.87640.99620.9924N/Ano
P27491CB27_TOBACNo assigned EC number0.76860.98110.9737N/Ano
P27496CB25_TOBACNo assigned EC number0.77610.98110.9737N/Ano
P27497CB29_MAIZENo assigned EC number0.76200.96980.9698N/Ano
P27494CB23_TOBACNo assigned EC number0.90181.01.0N/Ano
P27495CB24_TOBACNo assigned EC number0.77230.98110.9737N/Ano
P20866CB2_PHYPANo assigned EC number0.77730.99240.9776N/Ano
P04778CB1C_ARATHNo assigned EC number0.76860.98110.9737nono
P04779CB21_PETSPNo assigned EC number0.75830.97350.9699N/Ano
P07371CB22_PEANo assigned EC number0.83890.87540.8624N/Ano
P07370CB2B_SOLLCNo assigned EC number0.80070.98110.9811N/Ano
P12469CB23_NICPLNo assigned EC number0.76110.98110.9737N/Ano
P27518CB21_GOSHINo assigned EC number0.92451.01.0N/Ano
P04159CB21_PEANo assigned EC number0.83470.86031.0N/Ano
Q8VZ87CB1B_ARATHNo assigned EC number0.76860.98110.9737nono
P0CJ48CB1A_ARATHNo assigned EC number0.76860.98110.9737nono
P24006CB2A_PYRPYNo assigned EC number0.76271.00.9532N/Ano
P12333CB2A_SPIOLNo assigned EC number0.83610.87540.8689N/Ano
P12331CB22_ORYSJNo assigned EC number0.77610.95840.9731nono
P12330CB21_ORYSJNo assigned EC number0.85230.87540.8754nono
P09755CB22_SOYBNNo assigned EC number0.73230.93580.9687nono
P09756CB23_SOYBNNo assigned EC number0.85530.87920.8859nono
Q10HD0CB23_ORYSJNo assigned EC number0.89810.99241.0yesno
P04784CB21_WHEATNo assigned EC number0.74150.97350.9699N/Ano
P92919CB23_APIGRNo assigned EC number0.76980.98110.9848N/Ano
P04781CB23_PETSPNo assigned EC number0.77150.97730.9700N/Ano
P04780CB22_PETSPNo assigned EC number0.73880.98110.9737N/Ano
P04783CB25_PETSPNo assigned EC number0.77610.98110.9737N/Ano
P04782CB24_PETSPNo assigned EC number0.77610.97730.9736N/Ano
P13851CB21_SINALNo assigned EC number0.76770.98110.9774N/Ano
P07369CB2G_SOLLCNo assigned EC number0.78960.98490.9775N/Ano
A2XJ35CB23_ORYSINo assigned EC number0.89810.99241.0N/Ano
P14278CB24_SOLLCNo assigned EC number0.90181.01.0N/Ano
P12062CB26_PETSPNo assigned EC number0.91321.01.0N/Ano
P27490CB28_PEANo assigned EC number0.75370.98490.9738N/Ano
P12470CB25_NICPLNo assigned EC number0.76110.98110.9774N/Ano
P12471CB21_SOYBNNo assigned EC number0.82970.87920.9510nono
P15194CB2B_PINSYNo assigned EC number0.76271.00.9671N/Ano
P15195CB23_POLMUNo assigned EC number0.79020.99240.9924N/Ano
P15193CB2A_PINSYNo assigned EC number0.77001.00.9532N/Ano
P27520CB215_PEANo assigned EC number0.89811.01.0N/Ano
P14279CB25_SOLLCNo assigned EC number0.93610.88670.9915N/Ano
P08963CB22_HORVUNo assigned EC number0.76770.97350.9772N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query265
PLN00025262 PLN00025, PLN00025, photosystem II light harvestin 0.0
PLN00171324 PLN00171, PLN00171, photosystem light-harvesting c 2e-79
pfam00504135 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding 5e-55
PLN00048262 PLN00048, PLN00048, photosystem I light harvesting 6e-49
PLN00147252 PLN00147, PLN00147, light-harvesting complex I chl 1e-43
PLN00097244 PLN00097, PLN00097, photosystem I light harvesting 3e-40
PLN00099243 PLN00099, PLN00099, light-harvesting complex IChlo 8e-38
PLN00098267 PLN00098, PLN00098, light-harvesting complex I chl 2e-37
PLN00187286 PLN00187, PLN00187, photosystem II light-harvestin 3e-36
PLN00100246 PLN00100, PLN00100, light-harvesting complex chlor 3e-34
PLN00101250 PLN00101, PLN00101, Photosystem I light-harvesting 2e-31
PLN00170255 PLN00170, PLN00170, photosystem II light-harvestin 9e-18
pfam00504135 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding 3e-08
PLN00120202 PLN00120, PLN00120, fucoxanthin-chlorophyll a-c bi 8e-06
PLN00089209 PLN00089, PLN00089, fucoxanthin-chlorophyll a/c bi 4e-05
>gnl|CDD|215033 PLN00025, PLN00025, photosystem II light harvesting chlorophyll a/b binding protein; Provisional Back     alignment and domain information 
 Score =  537 bits (1386), Expect = 0.0
 Identities = 223/265 (84%), Positives = 240/265 (90%), Gaps = 5/265 (1%)

Query: 3   TSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSA--PQSIWYGPDRPKYLGP 60
             A+  +AFAGQ AL+  NE  RKVG    GR+TMR+TV  A    SIWYGPDRPKYLGP
Sbjct: 1   AMALSSTAFAGQAALKPPNELSRKVG---NGRVTMRKTVAKAAGSGSIWYGPDRPKYLGP 57

Query: 61  FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 120
           FS +TPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH+RWAMLGALGCV PE+L+K
Sbjct: 58  FSGETPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAK 117

Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGP 180
           NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+ GGP
Sbjct: 118 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVNGGP 177

Query: 181 LGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
           LGEGLDPLYPGG+FDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+E
Sbjct: 178 LGEGLDPLYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 237

Query: 241 NLYDHIADPVANNAWAYATNFVPGK 265
           NL DH+ADPVANNAWAYATNFVPGK
Sbjct: 238 NLADHLADPVANNAWAYATNFVPGK 262

Length = 262
>gnl|CDD|215088 PLN00171, PLN00171, photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional Back     alignment and domain information
>gnl|CDD|215956 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding protein Back     alignment and domain information
>gnl|CDD|177680 PLN00048, PLN00048, photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional Back     alignment and domain information
>gnl|CDD|215076 PLN00147, PLN00147, light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional Back     alignment and domain information
>gnl|CDD|165670 PLN00097, PLN00097, photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional Back     alignment and domain information
>gnl|CDD|177717 PLN00099, PLN00099, light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional Back     alignment and domain information
>gnl|CDD|177716 PLN00098, PLN00098, light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional Back     alignment and domain information
>gnl|CDD|177781 PLN00187, PLN00187, photosystem II light-harvesting complex II protein Lhcb4; Provisional Back     alignment and domain information
>gnl|CDD|215054 PLN00100, PLN00100, light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional Back     alignment and domain information
>gnl|CDD|215055 PLN00101, PLN00101, Photosystem I light-harvesting complex type 4 protein; Provisional Back     alignment and domain information
>gnl|CDD|215087 PLN00170, PLN00170, photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional Back     alignment and domain information
>gnl|CDD|215956 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding protein Back     alignment and domain information
>gnl|CDD|215063 PLN00120, PLN00120, fucoxanthin-chlorophyll a-c binding protein; Provisional Back     alignment and domain information
>gnl|CDD|177710 PLN00089, PLN00089, fucoxanthin-chlorophyll a/c binding protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 265
PLN00025262 photosystem II light harvesting chlorophyll a/b bi 100.0
PLN00187286 photosystem II light-harvesting complex II protein 100.0
PLN00171324 photosystem light-harvesting complex -chlorophyll 100.0
PLN00098267 light-harvesting complex I chlorophyll a/b-binding 100.0
PLN00097244 photosystem I light harvesting complex Lhca2/4, ch 100.0
PLN00101250 Photosystem I light-harvesting complex type 4 prot 100.0
PLN00099243 light-harvesting complex IChlorophyll A-B binding 100.0
PLN00147252 light-harvesting complex I chlorophyll-a/b binding 100.0
PLN00048262 photosystem I light harvesting chlorophyll a/b bin 100.0
PLN00100246 light-harvesting complex chlorophyll-a/b protein o 100.0
PLN00170255 photosystem II light-harvesting-Chl-binding protei 100.0
PF00504156 Chloroa_b-bind: Chlorophyll A-B binding protein; I 100.0
PLN00089209 fucoxanthin-chlorophyll a/c binding protein; Provi 100.0
PLN00120202 fucoxanthin-chlorophyll a-c binding protein; Provi 100.0
PLN00101 250 Photosystem I light-harvesting complex type 4 prot 99.61
PLN00098 267 light-harvesting complex I chlorophyll a/b-binding 99.61
PLN00147 252 light-harvesting complex I chlorophyll-a/b binding 99.55
PLN00170 255 photosystem II light-harvesting-Chl-binding protei 99.5
PLN00097 244 photosystem I light harvesting complex Lhca2/4, ch 99.49
PLN00171 324 photosystem light-harvesting complex -chlorophyll 99.48
PLN00025 262 photosystem II light harvesting chlorophyll a/b bi 99.46
PLN00100 246 light-harvesting complex chlorophyll-a/b protein o 99.45
PLN00048262 photosystem I light harvesting chlorophyll a/b bin 99.44
PLN00099 243 light-harvesting complex IChlorophyll A-B binding 99.4
PLN00089209 fucoxanthin-chlorophyll a/c binding protein; Provi 99.4
PLN00187286 photosystem II light-harvesting complex II protein 99.38
PF00504156 Chloroa_b-bind: Chlorophyll A-B binding protein; I 99.34
PLN00120202 fucoxanthin-chlorophyll a-c binding protein; Provi 99.16
PLN00084214 photosystem II subunit S (PsbS); Provisional 98.18
PHA0233735 putative high light inducible protein 98.1
PLN00014250 light-harvesting-like protein 3; Provisional 97.56
PHA0233735 putative high light inducible protein 96.98
PLN00014250 light-harvesting-like protein 3; Provisional 94.09
PLN00084214 photosystem II subunit S (PsbS); Provisional 88.77
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=5e-82  Score=574.39  Aligned_cols=259  Identities=85%  Similarity=1.443  Sum_probs=234.4

Q ss_pred             hhhhhhhhhhhhhhccchhhhhhhccccccceeeeccccCC--CCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCccc
Q 024579            4 SAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSA--PQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDT   81 (265)
Q Consensus         4 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~w~~~~r~~~~gpf~~~~P~yL~G~~pGd~gfDP   81 (265)
                      +++++++|+|+....+.+...+   ..+.+|++||++....  +.+.||++||++|||||+.++|+||||++||||||||
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~R~~~l~p~~~~~P~~Ldg~~pGD~GfDP   78 (262)
T PLN00025          2 MALSSTAFAGQAALKPPNELSR---KVGNGRVTMRKTVAKAAGSGSIWYGPDRPKYLGPFSGETPSYLTGEFPGDYGWDT   78 (262)
T ss_pred             chhhhhhhhccccccCCcccch---hccccchhhchhhcccccccccccCCCCccccCCcccCCcccccCcCCCCCCCCc
Confidence            3456789999987654444433   2355788888743222  5678999999999999987899999999999999999


Q ss_pred             CCcCCChhHHhhhHHHHHhhcceeeecccchhhhhhhhcCCccccchhhhhcccccccCCCcccCCCChhhHHHHHHHHH
Q 024579           82 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIW  161 (265)
Q Consensus        82 LGLs~dpe~~~~~ReaELkHGR~AMLA~~G~lvpE~l~~~G~~f~~~~w~~ag~~~~~~g~l~y~~~p~~~~~q~i~~i~  161 (265)
                      |||++||++++||||+|||||||||||++||++||+++..|++|+++.||++|.+++++++++|+++|.++++|++.+++
T Consensus        79 lGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g~~~~~~~W~~ag~~~~~~gg~~y~~~p~~~~~~~~~a~~  158 (262)
T PLN00025         79 AGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIW  158 (262)
T ss_pred             cccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCCcCcCcccccccccccccccccccccCcccchhhhHHHHH
Confidence            99999999999999999999999999999999999999888888888999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhceeecCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhcCCCchhh
Q 024579          162 ACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIEN  241 (265)
Q Consensus       162 ~~q~~l~g~~E~~r~~~~p~g~~~d~~yPG~~FDPLgl~~dpe~~~~~k~kELkNGRLAMlA~~G~~~Q~~vTG~gPl~n  241 (265)
                      ++|+++||++|.+|+.+.+.++..|+.||||+||||||++|+++++++|+||||||||||+||+||++|+++||+||++|
T Consensus       159 ~~qv~lmg~~E~~r~~~~~~~~~~d~~yPG~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vTG~GPlen  238 (262)
T PLN00025        159 ACQVVLMGAVEGYRVNGGPLGEGLDPLYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN  238 (262)
T ss_pred             HHHHHHHHHHHHhcccCCcccccccCcCCcccCCccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHH
Confidence            99999999999999987776666678999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhCCCcCCCcccccccCCCCC
Q 024579          242 LYDHIADPVANNAWAYATNFVPGK  265 (265)
Q Consensus       242 L~~hladP~~~n~~~~~~~~~~~~  265 (265)
                      |.+||+||+|||+|+++++|+|++
T Consensus       239 L~~hladP~~~n~~~~~~~~~~~~  262 (262)
T PLN00025        239 LADHLADPVANNAWAYATNFVPGK  262 (262)
T ss_pred             HHHHhcCccccchhhhhhhcCCCC
Confidence            999999999999999999999985

>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional Back     alignment and domain information
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional Back     alignment and domain information
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional Back     alignment and domain information
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional Back     alignment and domain information
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional Back     alignment and domain information
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional Back     alignment and domain information
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional Back     alignment and domain information
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional Back     alignment and domain information
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional Back     alignment and domain information
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional Back     alignment and domain information
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein Back     alignment and domain information
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional Back     alignment and domain information
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional Back     alignment and domain information
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional Back     alignment and domain information
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional Back     alignment and domain information
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional Back     alignment and domain information
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional Back     alignment and domain information
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional Back     alignment and domain information
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional Back     alignment and domain information
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional Back     alignment and domain information
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional Back     alignment and domain information
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional Back     alignment and domain information
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional Back     alignment and domain information
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional Back     alignment and domain information
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional Back     alignment and domain information
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein Back     alignment and domain information
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional Back     alignment and domain information
>PLN00084 photosystem II subunit S (PsbS); Provisional Back     alignment and domain information
>PHA02337 putative high light inducible protein Back     alignment and domain information
>PLN00014 light-harvesting-like protein 3; Provisional Back     alignment and domain information
>PHA02337 putative high light inducible protein Back     alignment and domain information
>PLN00014 light-harvesting-like protein 3; Provisional Back     alignment and domain information
>PLN00084 photosystem II subunit S (PsbS); Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query265
1vcr_A232 An Icosahedral Assembly Of Light-Harvesting Chlorop 1e-105
1rwt_A232 Crystal Structure Of Spinach Major Light-harvesting 1e-105
2bhw_A232 Pea Light-Harvesting Complex Ii At 2.5 Angstrom Res 1e-104
2wsc_3276 Improved Model Of Plant Photosystem I Length = 276 1e-29
2wsc_1241 Improved Model Of Plant Photosystem I Length = 241 3e-29
2o01_1187 The Structure Of A Plant Photosystem I Supercomplex 3e-29
2o01_2186 The Structure Of A Plant Photosystem I Supercomplex 1e-27
2wsc_2269 Improved Model Of Plant Photosystem I Length = 269 2e-27
3lw5_1170 Improved Model Of Plant Photosystem I Length = 170 2e-25
3lw5_2176 Improved Model Of Plant Photosystem I Length = 176 8e-21
3pl9_A243 Crystal Structure Of Spinach Minor Light-Harvesting 1e-20
2wsc_4251 Improved Model Of Plant Photosystem I Length = 251 2e-19
2o01_3165 The Structure Of A Plant Photosystem I Supercomplex 9e-18
3lw5_3172 Improved Model Of Plant Photosystem I Length = 172 1e-14
2o01_4165 The Structure Of A Plant Photosystem I Supercomplex 8e-13
3lw5_4166 Improved Model Of Plant Photosystem I Length = 166 3e-12
>pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB Protein Complex From Pea Thylakoid Membranes Length = 232 Back     alignment and structure 
Iteration: 1

 Score =  379 bits (972), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 183/230 (79%), Positives = 199/230 (86%), Gaps = 2/230 (0%)
Query: 36  TMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNR 95
           T ++   S   S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETF+KNR
Sbjct: 5   TTKKVASSG--SPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNR 62
Query: 96  ELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQ 155
           ELEVIHSRWAMLGALGCVFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQ
Sbjct: 63  ELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQ 122
Query: 156 SILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELK 215
           SILAIWA QV+LMG VEGYRI                +FDPLGLADDP+ FAELKVKELK
Sbjct: 123 SILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELK 182
Query: 216 NGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
           NGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAW+YATNFVPGK
Sbjct: 183 NGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 232
>pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting Complex At 2.72 Angstrom Resolution Length = 232 Back     alignment and structure
>pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution Length = 232 Back     alignment and structure
>pdb|2WSC|3 Chain 3, Improved Model Of Plant Photosystem I Length = 276 Back     alignment and structure
>pdb|2WSC|1 Chain 1, Improved Model Of Plant Photosystem I Length = 241 Back     alignment and structure
>pdb|2O01|1 Chain 1, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 187 Back     alignment and structure
>pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 186 Back     alignment and structure
>pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I Length = 269 Back     alignment and structure
>pdb|3LW5|1 Chain 1, Improved Model Of Plant Photosystem I Length = 170 Back     alignment and structure
>pdb|3LW5|2 Chain 2, Improved Model Of Plant Photosystem I Length = 176 Back     alignment and structure
>pdb|3PL9|A Chain A, Crystal Structure Of Spinach Minor Light-Harvesting Complex Cp29 At 2.80 Angstrom Resolution Length = 243 Back     alignment and structure
>pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I Length = 251 Back     alignment and structure
>pdb|2O01|3 Chain 3, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 165 Back     alignment and structure
>pdb|3LW5|3 Chain 3, Improved Model Of Plant Photosystem I Length = 172 Back     alignment and structure
>pdb|2O01|4 Chain 4, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 165 Back     alignment and structure
>pdb|3LW5|4 Chain 4, Improved Model Of Plant Photosystem I Length = 166 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query265
2bhw_A232 Chlorophyll A-B binding protein AB80; LHC-II, phot 1e-89
2wsc_2269 LHCA2, type II chlorophyll A/B binding protein fro 3e-58
2wsc_2 269 LHCA2, type II chlorophyll A/B binding protein fro 6e-06
2wsc_1241 AT3G54890, LHCA1; photosynthesis, electron transfe 3e-58
2wsc_3276 LHCA3, type II chlorophyll A/B binding protein fro 2e-57
2wsc_4251 Chlorophyll A-B binding protein P4, chloroplastic; 2e-55
3pl9_A243 Chlorophyll A-B binding protein; CP29, light-harve 7e-52
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A* Length = 232 Back     alignment and structure
 Score =  264 bits (675), Expect = 1e-89
 Identities = 194/232 (83%), Positives = 212/232 (91%)

Query: 34  RITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAK 93
           R +      ++  S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETF+K
Sbjct: 1   RKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSK 60

Query: 94  NRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIH 153
           NRELEVIHSRWAMLGALG VFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+H
Sbjct: 61  NRELEVIHSRWAMLGALGSVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 120

Query: 154 AQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKE 213
           AQSILAIWA QV+LMG VEGYRI GGPLGE +DPLYPGG+FDPLGLADDP+ FAELKVKE
Sbjct: 121 AQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKE 180

Query: 214 LKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 265
           LKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAW+YATNFVPGK
Sbjct: 181 LKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 232
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2* Length = 269 Back     alignment and structure
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2* Length = 269 Back     alignment and structure
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1* Length = 241 Back     alignment and structure
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3* Length = 276 Back     alignment and structure
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4* Length = 251 Back     alignment and structure
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea} Length = 243 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query265
2bhw_A232 Chlorophyll A-B binding protein AB80; LHC-II, phot 100.0
3pl9_A243 Chlorophyll A-B binding protein; CP29, light-harve 100.0
2wsc_3276 LHCA3, type II chlorophyll A/B binding protein fro 100.0
2wsc_2269 LHCA2, type II chlorophyll A/B binding protein fro 100.0
2wsc_4251 Chlorophyll A-B binding protein P4, chloroplastic; 100.0
2wsc_1241 AT3G54890, LHCA1; photosynthesis, electron transfe 100.0
2bhw_A 232 Chlorophyll A-B binding protein AB80; LHC-II, phot 99.47
2wsc_4 251 Chlorophyll A-B binding protein P4, chloroplastic; 99.44
2wsc_2 269 LHCA2, type II chlorophyll A/B binding protein fro 99.42
3pl9_A243 Chlorophyll A-B binding protein; CP29, light-harve 99.39
2wsc_3276 LHCA3, type II chlorophyll A/B binding protein fro 99.33
2wsc_1 241 AT3G54890, LHCA1; photosynthesis, electron transfe 99.31
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A* Back     alignment and structure
Probab=100.00  E-value=9.7e-79  Score=545.29  Aligned_cols=223  Identities=87%  Similarity=1.480  Sum_probs=211.4

Q ss_pred             CCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcccCCcCCChhHHhhhHHHHHhhcceeeecccchhhhhhhhcCC
Q 024579           43 SAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNG  122 (265)
Q Consensus        43 ~~~~~~w~~~~r~~~~gpf~~~~P~yL~G~~pGd~gfDPLGLs~dpe~~~~~ReaELkHGR~AMLA~~G~lvpE~l~~~G  122 (265)
                      ++++|+||++||++|+|||+.++|+||||++|||||||||||++|+|+++||||+|||||||||||++||++||++++.|
T Consensus        10 ~~~~~~~~~~~r~~~l~~~~~~~P~~LdG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~~G   89 (232)
T 2bhw_A           10 ASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSRNG   89 (232)
T ss_dssp             CCTTCTTSSTTCCCTTGGGCCSCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             cccCCcccCCCcccccCccccCCccccCCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhccCC
Confidence            45578999999999999997799999999999999999999999999999999999999999999999999999999889


Q ss_pred             ccccchhhhhcccccccCCCcccCCCChhhHHHHHHHHHHHHHHHHHhhhceeecCCCCCCCCCCCCCCCCCCCCCCCCC
Q 024579          123 VKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADD  202 (265)
Q Consensus       123 ~~f~~~~w~~ag~~~~~~g~l~y~~~p~~~~~q~i~~i~~~q~~l~g~~E~~r~~~~p~g~~~d~~yPG~~FDPLgl~~d  202 (265)
                      ++|+++.|+++|.+++++++++|+++|...+.|++.+++++|+++||++|.+|+.+++.++..|+.||||.|||||+.+|
T Consensus        90 ~~~~~~~w~~ag~~~~~~~~~~~~~~P~~~~~q~i~~~~~~q~~~~g~~E~~r~~~g~~g~~~d~~~Pg~~fdPlgl~~~  169 (232)
T 2bhw_A           90 VKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADD  169 (232)
T ss_dssp             CCCSCCSGGGSGGGGGSTTCEEGGGCTTSEEECCHHHHHHHHHHHHHHHHHHHHHEETTEECSSSSCCCTTSCTTCTTCS
T ss_pred             cCCcccccccccchhccccchhcccCcchhhHHHHHHHHHHHHHHHHHHHHHhhccCcccccccccCCCcccccchhccc
Confidence            99988999999998898888999999988888999999999999999999999887666666677899999999999999


Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhcCCCchhhhhhhhCCCcCCCcccccccCCCCC
Q 024579          203 PDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK  265 (265)
Q Consensus       203 pe~~~~~k~kELkNGRLAMlA~~G~~~Q~~vTG~gPl~nL~~hladP~~~n~~~~~~~~~~~~  265 (265)
                      +++++++|++|||||||||+||+|+++|+++||++|++||.+|++||+|||+++++++|+||+
T Consensus       170 ~~~~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~~~l~~~~adP~~~n~~~~~~~~~~~~  232 (232)
T 2bhw_A          170 PEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK  232 (232)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHHCTTTSSGGGGTTTTCSCC
T ss_pred             hHHHHHHHHhhhhccchHHHHHHHHHHHHHhcCCChHHHHHHHhcChHHhHHHHHHHhhcCCC
Confidence            999999999999999999999999999999999999999999999999999999999999985
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea} Back     alignment and structure
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3* Back     alignment and structure
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2* Back     alignment and structure
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4* Back     alignment and structure
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1* Back     alignment and structure
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A* Back     alignment and structure
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4* Back     alignment and structure
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2* Back     alignment and structure
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea} Back     alignment and structure
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3* Back     alignment and structure
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 265
d1rwta_218 f.43.1.1 (A:) Chlorophyll a-b binding protein {Spi 1e-105
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 218 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score =  301 bits (772), Expect = e-105
 Identities = 191/218 (87%), Positives = 207/218 (94%)

Query: 47  SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 106
           S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAM
Sbjct: 1   SPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAM 60

Query: 107 LGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVV 166
           LGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQV+
Sbjct: 61  LGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVI 120

Query: 167 LMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFG 226
           LMG VEGYRI GGPLGE +DPLYPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFG
Sbjct: 121 LMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 180

Query: 227 FFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPG 264
           FFVQAIVTGKGP+ENL DH+ADPV NNAW +ATNFVPG
Sbjct: 181 FFVQAIVTGKGPLENLADHLADPVNNNAWNFATNFVPG 218

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query265
d1rwta_218 Chlorophyll a-b binding protein {Spinach (Spinacia 100.0
d1rwta_ 218 Chlorophyll a-b binding protein {Spinach (Spinacia 99.54
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=100.00  E-value=4.1e-77  Score=527.49  Aligned_cols=218  Identities=88%  Similarity=1.532  Sum_probs=203.8

Q ss_pred             CCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCcccCCcCCChhHHhhhHHHHHhhcceeeecccchhhhhhhhcCCcccc
Q 024579           47 SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG  126 (265)
Q Consensus        47 ~~w~~~~r~~~~gpf~~~~P~yL~G~~pGd~gfDPLGLs~dpe~~~~~ReaELkHGR~AMLA~~G~lvpE~l~~~G~~f~  126 (265)
                      |+||||||+||++||+.++|+||||++|||||||||||++|+++++||||+|||||||||||++|+++||++++.+..+.
T Consensus         1 ~~~~~~~r~~~~~~~~~~~P~~LdGs~pGD~GFDPLgls~d~~~~~~~ReaELKHGR~AMLA~vG~~~~E~~~~~~~~~~   80 (218)
T d1rwta_           1 SPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG   80 (218)
T ss_dssp             CTTSSTTCCCTTGGGGCSCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCS
T ss_pred             CCCCCCCCcccCCccccCCCcccCCCCCCCCCcCCcccCCCHHHHHHHHHHHHhhceehHhhhcceeehhhhccCCCCCC
Confidence            58999999999999987899999999999999999999999999999999999999999999999999999998777777


Q ss_pred             chhhhhcccccccCCCcccCCCChhhHHHHHHHHHHHHHHHHHhhhceeecCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q 024579          127 EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDQF  206 (265)
Q Consensus       127 ~~~w~~ag~~~~~~g~l~y~~~p~~~~~q~i~~i~~~q~~l~g~~E~~r~~~~p~g~~~d~~yPG~~FDPLgl~~dpe~~  206 (265)
                      ...|++++......+.++++..|.....|.+..++++++.+++.+|.+|..+++.+...+..|||+.||||++.+|+|++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~g~fdPlg~~~~~e~~  160 (218)
T d1rwta_          81 EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAF  160 (218)
T ss_dssp             CCSHHHHGGGGGSTTCBCGGGCTTSCCBCCHHHHHHHHHHHHHHHHHHHHHCBTTBCCSSSSCCCGGGCTTCTTCSHHHH
T ss_pred             CcccccccccccCcchhhhhcCchHHHHHHHHHHHHHHHHHHhhhhhhcccCCCcccccCCCCCCCCccccccCCCHHHH
Confidence            88899988888888888888888877788888889999999999999988776666666788999889999999999999


Q ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHhhcCCCchhhhhhhhCCCcCCCcccccccCCCC
Q 024579          207 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPG  264 (265)
Q Consensus       207 ~~~k~kELkNGRLAMlA~~G~~~Q~~vTG~gPl~nL~~hladP~~~n~~~~~~~~~~~  264 (265)
                      +++|+|||||||||||||+||++|+++||++|++||.+|++||+||||++++||+|||
T Consensus       161 ~~~k~kElkNGRLAMlAi~G~~~qe~vtG~gp~~nl~~h~~~P~~~n~~~~~~~~~~~  218 (218)
T d1rwta_         161 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWNFATNFVPG  218 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHCTTTSSGGGGTTSSCCC
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCHHHHHHHHhcCchhhhHHHHHhccCCC
Confidence            9999999999999999999999999999999999999999999999999999999997
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure