Citrus Sinensis ID: 024586

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-----
Protein Sequence
MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIKPLIRAIKSDAAKEAKPVWARASRRL
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHccccccccccccccccEEEEEEEEccEEEEEEEccccccccccHHHHHHHHHHHHcccccccEEEEEEEccccccHHHHHHHHHHHHHHcHHHHccEEEEEEcccccccccccHHHHHHHcHHHHHHHHcHHHccHHHccccccccEEEEEcccccccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHcccEEEEccccccccccEEEEEEEEccEEEEEEEccccccccccHHHHHHHHHHHHHcccccEEEEEEEcccccccHHHHHHHHHHHHHHcHHHHHcEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHccHHHccccccccEEEEEccccccccccccEEccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHcccc
Coil and Loop (DISEMBL)
mgkggvgksstVNSIIGEKAVTvstfqsegprpvmvsrsragftlnivdtpglieggyvNYHAIQLIKRFLLNKTIDVLLYvdrldvyrvdnlDKQITRAITDNFGEQIWKRALIVLTHAQlslpdrldyEVFCSKRSEALLkfvspstwmkkkdiqgsfVPVVLVEnsgrcaknendekvlpngtawiPNLVKTITEVVLNGSKallvdkklvegpnpnekgkilIPFIFAFQYFFIIKPLIRAIKSDAAKEAKPVWARASRRL
Flexible Loop (DISEMBL)
mgkggvgksstvnsiigekavtvstfqsegprpvmvsrsragFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALlkfvspstwmkkkdiqgSFVPVVLVENSgrcaknendekvlpngtaWIPNLVKTITEVVLNGSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIKPLIRAIKSdaakeakpvwarasrrl
Low Complexity Region (SEG)
MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIKPLIRAIKSDAAKEAKPVWARASRRL
Disordered region (IsUnstruct)
*************************************RSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIKPLIRAIKS*****************
Disordered Region (DISOPRED)
MGKGGVGKSSTVNSIIGEKAV****************RSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGSKA*******************LIPFIFAFQYFFIIKPL*******************S***
Disordered Region (DISEMBL)
**********TVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIKPLIRAIKS*****************
Disordered Region (DISPRO)
*****VGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIKPLIRAIKSDAAKEAKPVW*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIKPLIRAIKSDAAKEAKPVWARASRRL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	265	2.2.26 [Sep-21-2011]
Q38906	313	Translocase of chloroplas	yes	no	0.996	0.843	0.691	1e-108
Q41009	310	Translocase of chloroplas	N/A	no	0.969	0.829	0.682	1e-101
O23680	297	Translocase of chloroplas	no	no	0.966	0.861	0.610	3e-88
Q9LUS2	1089	Translocase of chloroplas	no	no	0.709	0.172	0.328	2e-24
Q9SLF3	1206	Translocase of chloroplas	no	no	0.709	0.155	0.338	3e-23
Q552Z6	449	GTP-binding protein A OS=	yes	no	0.747	0.440	0.320	2e-22
O81283	1503	Translocase of chloroplas	no	no	0.728	0.128	0.333	1e-21
Q6S5G3	793	Translocase of chloroplas	no	no	0.709	0.237	0.318	4e-21
P70224	277	GTPase IMAP family member	yes	no	0.486	0.465	0.293	4e-05
Q99JY3	219	GTPase IMAP family member	no	no	0.433	0.525	0.344	0.0006

>sp|Q38906|TOC34_ARATH Translocase of chloroplast 34, chloroplastic OS=Arabidopsis thaliana GN=TOC34 PE=1 SV=2

 Score =  391 bits (1005), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 186/269 (69%), Positives = 221/269 (82%), Gaps = 5/269 (1%)

Query: 1   MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 60
           MGKGGVGKSSTVNS+IGEKA  VSTFQSEG RP +VSR+R+GFTLNI+DTPGLIEGGYVN
Sbjct: 44  MGKGGVGKSSTVNSVIGEKAAAVSTFQSEGLRPTLVSRTRSGFTLNIIDTPGLIEGGYVN 103

Query: 61  YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 120
             AI +IKRFLLN TIDVLLYVDRLDVYRVD+LD+Q+  AITD FG++IWK++ +VLTHA
Sbjct: 104 DQAINIIKRFLLNMTIDVLLYVDRLDVYRVDDLDRQVVGAITDAFGKEIWKKSALVLTHA 163

Query: 121 QLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEK 180
           Q S PD L+Y  F SKRS ALLK +     +KK+D+QG  +PV+LVENSGRC KNE+DEK
Sbjct: 164 QFSPPDGLNYNHFVSKRSNALLKVIQTGAQLKKQDLQGFSIPVILVENSGRCHKNESDEK 223

Query: 181 VLPNGTAWIPNLVKTITEVVLNGSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIK 240
           +LP GT+WIPNL   ITE+  NG+KA+ VDKKLVEGPNPNE+GK LIP +FAFQY  ++K
Sbjct: 224 ILPCGTSWIPNLFNKITEISFNGNKAIHVDKKLVEGPNPNERGKKLIPLMFAFQYLLVMK 283

Query: 241 PLIRAIKSDAAKEAKPVW-----ARASRR 264
           PL+RAIKSD ++E+KP W       ASRR
Sbjct: 284 PLVRAIKSDVSRESKPAWELRDSGLASRR 312

GTPase involved in protein precursor import into chloroplasts. Seems to recognize chloroplast-destined precursor proteins and regulate their presentation to the translocation channel through GTP hydrolysis. Probably specialized in the import of nuclear encoded non-photosynthetic preproteins from the cytoplasm to the chloroplast.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 5EC: .EC: -

>sp|Q41009|TOC34_PEA Translocase of chloroplast 34 OS=Pisum sativum GN=TOC34 PE=1 SV=1

 Score =  369 bits (947), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 176/258 (68%), Positives = 211/258 (81%), Gaps = 1/258 (0%)

Query: 1   MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 60
           MGKGGVGKSSTVNSIIGE+ V++S FQSEGPRPVMVSRSRAGFTLNI+DTPGLIEGGY+N
Sbjct: 45  MGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYIN 104

Query: 61  YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 120
             A+ +IK FLL+KTIDVLLYVDRLD YRVDNLDK + +AITD+FG+ IW +A++ LTHA
Sbjct: 105 DMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHA 164

Query: 121 QLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEK 180
           Q S PD L Y+ F SKRSEALL+ V     + KKD Q S +PVVL+ENSGRC KN++DEK
Sbjct: 165 QFSPPDGLPYDEFFSKRSEALLQVVRSGASL-KKDAQASDIPVVLIENSGRCNKNDSDEK 223

Query: 181 VLPNGTAWIPNLVKTITEVVLNGSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIK 240
           VLPNG AWIP+LV+TITEV LN S+++ VDK L++GPNPN++GK+ IP IFA QY F+ K
Sbjct: 224 VLPNGIAWIPHLVQTITEVALNKSESIFVDKNLIDGPNPNQRGKLWIPLIFALQYLFLAK 283

Query: 241 PLIRAIKSDAAKEAKPVW 258
           P+   I+ D A E KP W
Sbjct: 284 PIEALIRRDIATETKPAW 301

GTPase involved in protein precursor import into chloroplasts. Seems to recognize chloroplast-destined precursor proteins and regulate their presentation to the translocation channel through GTP hydrolysis.

Pisum sativum (taxid: 3888)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|O23680|TOC33_ARATH Translocase of chloroplast 33, chloroplastic OS=Arabidopsis thaliana GN=TOC33 PE=1 SV=1

 Score =  325 bits (832), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 157/257 (61%), Positives = 197/257 (76%), Gaps = 1/257 (0%)

Query: 1   MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 60
           +GKGGVGKSSTVNS+IGE+ V VS FQ+EG RPVMVSR+  GFT+NI+DTPGL+E GYVN
Sbjct: 42  LGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVN 101

Query: 61  YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 120
           + A++LIK FL+N+TIDVLLYVDRLDVYRVD LDKQ+  AIT  FG++IW + L+VLTHA
Sbjct: 102 HQALELIKGFLVNRTIDVLLYVDRLDVYRVDELDKQVVIAITQTFGKEIWCKTLLVLTHA 161

Query: 121 QLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEK 180
           Q S PD L YE F SKRS++LLK +   + M+K++ + S + VV  ENSGRC+KN+ DEK
Sbjct: 162 QFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEK 221

Query: 181 VLPNGTAWIPNLVKTITEVVLNGSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIK 240
            LPNG AWIPNLVK IT+V  N  KA+ VDKK+V+G   ++KGK LIP I   QY  I+K
Sbjct: 222 ALPNGEAWIPNLVKAITDVATNQRKAIHVDKKMVDGSYSDDKGKKLIPLIIGAQY-LIVK 280

Query: 241 PLIRAIKSDAAKEAKPV 257
            +  AI++D     KP+
Sbjct: 281 MIQGAIRNDIKTSGKPL 297

GTPase involved in protein precursor import into chloroplasts. Seems to recognize chloroplast-destined precursor proteins and regulate their presentation to the translocation channel through GTP hydrolysis. Binds GTP, GDP, XTP, but not ATP. Probably specialized in the import of nuclear encoded photosynthetic preproteins from the cytoplasm to the chloroplast, especially during early development stages.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q9LUS2|TC120_ARATH Translocase of chloroplast 120, chloroplastic OS=Arabidopsis thaliana GN=TOC120 PE=1 SV=1

 Score =  113 bits (282), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/201 (32%), Positives = 106/201 (52%), Gaps = 13/201 (6%)

Query: 1   MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLI---EGG 57
           +GK GVGKS+T+NSI  E  ++   FQ    +   +     G  + ++DTPGL+      
Sbjct: 462 LGKSGVGKSATINSIFDELKISTDAFQVGTKKVQDIEGFVQGIKVRVIDTPGLLPSWSDQ 521

Query: 58  YVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVL 117
           + N   ++ ++ F+     D++LY+DRLD+   D+ D  + R ITD FG  IW  A++ L
Sbjct: 522 HKNEKILKSVRAFIKKSPPDIVLYLDRLDMQSRDSGDMPLLRTITDVFGPSIWFNAIVGL 581

Query: 118 THAQLSLPDRLD-----YEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRC 172
           THA  + PD  +     Y++F ++RS  + + +  +    +        PV LVEN   C
Sbjct: 582 THAASAPPDGPNGTASSYDMFVTQRSHVIQQAIRQAAGDMRL-----MNPVSLVENHSAC 636

Query: 173 AKNENDEKVLPNGTAWIPNLV 193
             N   ++VLPNG  W P+L+
Sbjct: 637 RTNRAGQRVLPNGQVWKPHLL 657

GTPase involved in protein precursor import into chloroplasts. Seems to recognize chloroplast-destined precursor proteins and regulate their presentation to the translocation channel through GTP hydrolysis. Probably specialized in the import of nuclear encoded non-photosynthetic preproteins from the cytoplasm to the chloroplast.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q9SLF3|TC132_ARATH Translocase of chloroplast 132, chloroplastic OS=Arabidopsis thaliana GN=TOC132 PE=1 SV=1

 Score =  108 bits (271), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/201 (33%), Positives = 101/201 (50%), Gaps = 13/201 (6%)

Query: 1   MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLI---EGG 57
           +GK GVGKS+T+NSI  E       FQ    R   V     G  + ++DTPGL+      
Sbjct: 580 LGKSGVGKSATINSIFDEVKFCTDAFQMGTKRVQDVEGLVQGIKVRVIDTPGLLPSWSDQ 639

Query: 58  YVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVL 117
             N   +  +K F+     D++LY+DRLD+   D+ D  + R I+D FG  IW  A++ L
Sbjct: 640 AKNEKILNSVKAFIKKNPPDIVLYLDRLDMQSRDSGDMPLLRTISDVFGPSIWFNAIVGL 699

Query: 118 THAQLSLPDRLD-----YEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRC 172
           THA    PD  +     Y++F ++RS  + + +  +    +        PV LVEN   C
Sbjct: 700 THAASVPPDGPNGTASSYDMFVTQRSHVIQQAIRQAAGDMRL-----MNPVSLVENHSAC 754

Query: 173 AKNENDEKVLPNGTAWIPNLV 193
             N   ++VLPNG  W P+L+
Sbjct: 755 RTNRAGQRVLPNGQVWKPHLL 775

GTPase involved in protein precursor import into chloroplasts. Seems to recognize chloroplast-destined precursor proteins and regulate their presentation to the translocation channel through GTP hydrolysis. Probably specialized in the import of nuclear encoded non-photosynthetic preproteins from the cytoplasm to the chloroplast.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q552Z6|GTPA_DICDI GTP-binding protein A OS=Dictyostelium discoideum GN=gtpA PE=3 SV=1

 Score =  106 bits (264), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/215 (32%), Positives = 113/215 (52%), Gaps = 17/215 (7%)

Query: 1   MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLI--EGGY 58
           +G+ GVGKSST+N++ G   + V + +S    P   SR   GF LNI+DTPG +  +G  
Sbjct: 157 LGRTGVGKSSTLNTVFG-IDIPVHSSESCTQDPFTYSRVVNGFKLNIIDTPGFLDSQGEL 215

Query: 59  VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLT 118
           V+ + +  I+R+L  KTI  +L+V++    R D   + +    T+  G Q+W+ A +VLT
Sbjct: 216 VDSNNMIKIQRYLSGKTIHCVLFVEKFTETRFDGAHQLVINQFTEKLGPQLWRNAAVVLT 275

Query: 119 HAQLSLPDRLDYEVFCSK------------RSEALLKFVSP-STWMKKKDIQGSFVPVVL 165
           +A   LPD   Y+ F  +            R+    KF +     + + D     +PV  
Sbjct: 276 YANSVLPDSC-YDGFDEEDDVGPWKKHYEARALQFRKFFAGILAQLPQDDYPPKHIPVYA 334

Query: 166 VENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVV 200
           +ENS RC +NE  ++VL +GT  +  L+  + ++V
Sbjct: 335 MENSRRCKRNEQGQRVLIDGTPCLHLLISGLLKMV 369

Dictyostelium discoideum (taxid: 44689)

>sp|O81283|TC159_ARATH Translocase of chloroplast 159, chloroplastic OS=Arabidopsis thaliana GN=TOC159 PE=1 SV=1

 Score =  103 bits (258), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/201 (33%), Positives = 99/201 (49%), Gaps = 8/201 (3%)

Query: 1    MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY-- 58
            +GK GVGKS+T+NSI+G +  ++  F         +S +  G  +  +DTPGL       
Sbjct: 861  LGKAGVGKSATINSILGNQIASIDAFGLSTTSVREISGTVNGVKITFIDTPGLKSAAMDQ 920

Query: 59   -VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVL 117
              N   +  +K+ +     D++LYVDRLD    D  +  + R IT + G  IWK A++ L
Sbjct: 921  STNAKMLSSVKKVMKKCPPDIVLYVDRLDTQTRDLNNLPLLRTITASLGTSIWKNAIVTL 980

Query: 118  THAQLSLPDR-----LDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRC 172
            THA  + PD      L Y+VF ++ S  + + +  +    +        PV LVEN   C
Sbjct: 981  THAASAPPDGPSGTPLSYDVFVAQCSHIVQQSIGQAVGDLRLMNPSLMNPVSLVENHPLC 1040

Query: 173  AKNENDEKVLPNGTAWIPNLV 193
             KN    KVLPNG  W   L+
Sbjct: 1041 RKNREGVKVLPNGQTWRSQLL 1061

GTPase involved in protein precursor import into chloroplasts. Seems to recognize chloroplast-destined precursor proteins and regulate their presentation to the translocation channel through GTP hydrolysis. Required for chloroplast biogenesis. Probably specialized in the import of nuclear encoded photosynthetic preproteins from the cytoplasm to the chloroplast.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q6S5G3|TOC90_ARATH Translocase of chloroplast 90, chloroplastic OS=Arabidopsis thaliana GN=TOC90 PE=1 SV=1

 Score =  102 bits (253), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 64/201 (31%), Positives = 101/201 (50%), Gaps = 13/201 (6%)

Query: 1   MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL----IEG 56
           +GK GVGKS+T+NSI G+       F+    R   V  + +G  +  +DTPG        
Sbjct: 172 LGKTGVGKSATINSIFGQPKSETDAFRPGTDRIEEVMGTVSGVKVTFIDTPGFHPLSSSS 231

Query: 57  GYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIV 116
              N   +  IKR++  +  DV+LY+DRLD+  +   D  + + IT+ FG  IW   ++V
Sbjct: 232 TRKNRKILLSIKRYVKKRPPDVVLYLDRLDMIDMRYSDFSLLQLITEIFGAAIWLNTILV 291

Query: 117 LTHAQLSLPDR----LDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRC 172
           +TH+  +   R    ++YE +  +R + +  ++  +    K +      PV+LVEN   C
Sbjct: 292 MTHSAATTEGRNGQSVNYESYVGQRMDVVQHYIHQAVSDTKLE-----NPVLLVENHPSC 346

Query: 173 AKNENDEKVLPNGTAWIPNLV 193
            KN   E VLPNG  W P  +
Sbjct: 347 KKNLAGEYVLPNGVVWKPQFM 367

GTPase involved in protein precursor import into chloroplasts. Seems to recognize chloroplast-destined precursor proteins and regulate their presentation to the translocation channel through GTP hydrolysis. Probably specialized in the import of nuclear encoded photosynthetic preproteins from the cytoplasm to the chloroplast.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|P70224|GIMA1_MOUSE GTPase IMAP family member 1 OS=Mus musculus GN=Gimap1 PE=1 SV=3

 Score = 48.5 bits (114), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 68/143 (47%), Gaps = 14/143 (9%)

Query: 1   MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPV-----MVSRSRAGFTLNIVDTPGLI- 54
           +G+ G GKS+T NSI+G+K          G  PV     + SR  AG+ + +VDTP +  
Sbjct: 9   VGRTGTGKSATGNSILGQKCF----LSRLGAVPVTRSCTLASRMWAGWQVEVVDTPDIFS 64

Query: 55  -EGGYVNYHAIQLIKRFLLNK-TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR 112
            E    +   ++  + F+L+      LL V +L  + +   D Q   A+   FG+Q+  R
Sbjct: 65  SEIPRTDPGCVETARCFVLSAPGPHALLLVTQLGRFTMQ--DSQALAAVKRLFGKQVMAR 122

Query: 113 ALIVLTHAQLSLPDRLDYEVFCS 135
            ++V T  +    D L   V C+
Sbjct: 123 TVVVFTRQEDLAGDSLQDYVHCT 145

May regulate lymphocyte survival. Required for normal levels of mature T-lymphocytes and mature B-cells.

Mus musculus (taxid: 10090)

>sp|Q99JY3|GIMA4_MOUSE GTPase IMAP family member 4 OS=Mus musculus GN=Gimap4 PE=1 SV=1

 Score = 44.7 bits (104), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 62/122 (50%), Gaps = 7/122 (5%)

Query: 1   MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA--GFTLNIVDTPGLIEGGY 58
           +GK G GKSST NSI+GEK V  S   ++    V   R     G  L +VDTPG+ +   
Sbjct: 36  LGKTGAGKSSTGNSILGEK-VFNSGICAKSITKVCEKRVSTWDGKELVVVDTPGIFDTEV 94

Query: 59  VNYHAIQLIKRF--LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIV 116
            +    + I R+  L +     LL V  L  Y V+  + + T+ I D FG+Q  +  +++
Sbjct: 95  PDADTQREITRYVALTSPGPHALLLVVPLGRYTVE--EHKATQKILDMFGKQARRFMILL 152

Query: 117 LT 118
           LT
Sbjct: 153 LT 154

Exhibits intrisinic GTPase activity. Shows a higher affinity for GDP over GTP (about 12-fold higher), and binding shows an absolute requirement for magnesium (By similarity). May play a role in regulating lymphocyte apoptosis.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
225463249	310	PREDICTED: translocase of chloroplast 34	0.973	0.832	0.767	1e-114
147833616	310	hypothetical protein VITISV_028305 [Viti	0.973	0.832	0.767	1e-114
297810595	313	ATTOC34/OEP34 [Arabidopsis lyrata subsp.	0.996	0.843	0.691	1e-108
15238381	313	translocase of chloroplast 34 [Arabidops	0.996	0.843	0.691	1e-106
307136094	312	chloroplast outer envelope protein 34 [C	0.973	0.826	0.713	1e-106
1151244	313	GTP-binding protein [Arabidopsis thalian	0.996	0.843	0.687	1e-105
449526463	312	PREDICTED: translocase of chloroplast 34	0.973	0.826	0.705	1e-105
21594231	313	GTP-binding protein [Arabidopsis thalian	0.996	0.843	0.684	1e-105
449456809	312	PREDICTED: translocase of chloroplast 34	0.973	0.826	0.701	1e-104
225454878	308	PREDICTED: translocase of chloroplast 34	0.996	0.857	0.694	1e-104

>gi|225463249|ref|XP_002274573.1| PREDICTED: translocase of chloroplast 34, chloroplastic [Vitis vinifera] gi|296083376|emb|CBI23265.3| unnamed protein product [Vitis vinifera]

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 198/258 (76%), Positives = 228/258 (88%)

Query: 1   MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 60
           MGKGGVGKSSTVNSIIGE+AV VS FQSEGPRPVMVSRSRAGFTLNI+DTPGL+EGGYVN
Sbjct: 43  MGKGGVGKSSTVNSIIGERAVAVSAFQSEGPRPVMVSRSRAGFTLNIIDTPGLVEGGYVN 102

Query: 61  YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 120
             A+++IKRFLLNKTIDVLLYVDRLD YRVDNLD+Q+ +AITD+FG++IW+R ++VLTHA
Sbjct: 103 DQALEIIKRFLLNKTIDVLLYVDRLDAYRVDNLDRQVVKAITDSFGKEIWRRGVVVLTHA 162

Query: 121 QLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEK 180
           QLS PD L+YE F SKRSEAL+K V     ++K+DIQ S +PVVLVENSGRC KNE+DEK
Sbjct: 163 QLSPPDGLNYEDFFSKRSEALMKVVRSGARLRKQDIQDSGIPVVLVENSGRCHKNESDEK 222

Query: 181 VLPNGTAWIPNLVKTITEVVLNGSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIK 240
           +LPNGTAWIPNLVKTIT+ V NGSK +LVDKKL+EGPNPNE+GK+LIPFI AFQYFFI+K
Sbjct: 223 ILPNGTAWIPNLVKTITDAVSNGSKGILVDKKLIEGPNPNERGKLLIPFILAFQYFFIVK 282

Query: 241 PLIRAIKSDAAKEAKPVW 258
            + RAIKSD AKE K  W
Sbjct: 283 RIQRAIKSDMAKERKAPW 300

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147833616|emb|CAN63847.1| hypothetical protein VITISV_028305 [Vitis vinifera]

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 198/258 (76%), Positives = 228/258 (88%)

Query: 1   MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 60
           MGKGGVGKSSTVNSIIGE+AV VS FQSEGPRPVMVSRSRAGFTLNI+DTPGL+EGGYVN
Sbjct: 43  MGKGGVGKSSTVNSIIGERAVAVSAFQSEGPRPVMVSRSRAGFTLNIIDTPGLVEGGYVN 102

Query: 61  YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 120
             A+++IKRFLLNKTIDVLLYVDRLD YRVDNLD+Q+ +AITD+FG++IW+R ++VLTHA
Sbjct: 103 DQALEIIKRFLLNKTIDVLLYVDRLDAYRVDNLDRQVVKAITDSFGKEIWRRGVVVLTHA 162

Query: 121 QLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEK 180
           QLS PD L+YE F SKRSEAL+K V     ++K+DIQ S +PVVLVENSGRC KNE+DEK
Sbjct: 163 QLSPPDGLNYEDFFSKRSEALMKVVRSGARLRKQDIQDSGIPVVLVENSGRCHKNESDEK 222

Query: 181 VLPNGTAWIPNLVKTITEVVLNGSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIK 240
           +LPNGTAWIPNLVKTIT+ V NGSK +LVDKKL+EGPNPNE+GK+LIPFI AFQYFFI+K
Sbjct: 223 ILPNGTAWIPNLVKTITDAVSNGSKGILVDKKLIEGPNPNERGKLLIPFILAFQYFFIVK 282

Query: 241 PLIRAIKSDAAKEAKPVW 258
            + RAIKSD AKE K  W
Sbjct: 283 RIQRAIKSDMAKERKAPW 300

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810595|ref|XP_002873181.1| ATTOC34/OEP34 [Arabidopsis lyrata subsp. lyrata] gi|297319018|gb|EFH49440.1| ATTOC34/OEP34 [Arabidopsis lyrata subsp. lyrata]

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 186/269 (69%), Positives = 224/269 (83%), Gaps = 5/269 (1%)

Query: 1   MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 60
           MGKGGVGKSSTVNS+IGEKA  VSTFQSEG RP +VSRSR+GFTLNI+DTPGLIEGGYVN
Sbjct: 44  MGKGGVGKSSTVNSVIGEKAAAVSTFQSEGLRPTLVSRSRSGFTLNIIDTPGLIEGGYVN 103

Query: 61  YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 120
             AI +IKRFLLN TIDVLLYVDRLDVYRVD+LD+Q+  AITD FG++IWK++ +VLTHA
Sbjct: 104 DQAINIIKRFLLNMTIDVLLYVDRLDVYRVDDLDRQVVSAITDAFGKEIWKKSALVLTHA 163

Query: 121 QLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEK 180
           Q S PD L+Y  F S+RS+ALLK +     +KK+D+QGS  P++LVENSGRC KN++DEK
Sbjct: 164 QFSPPDGLNYNSFVSRRSDALLKVIRTGAQLKKQDLQGSSTPIILVENSGRCHKNDSDEK 223

Query: 181 VLPNGTAWIPNLVKTITEVVLNGSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIK 240
           +LP+GT+WIPNL+ TITE+  NG+KA+ VDKKLVEGPNPN++GK LIP IFAFQY  ++K
Sbjct: 224 ILPDGTSWIPNLLNTITEISFNGNKAIHVDKKLVEGPNPNQRGKRLIPLIFAFQYLLVMK 283

Query: 241 PLIRAIKSDAAKEAKPVW-----ARASRR 264
           PL+RAIKSD  +E+KP W       ASRR
Sbjct: 284 PLVRAIKSDVTRESKPAWELRDSGLASRR 312

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15238381|ref|NP_196119.1| translocase of chloroplast 34 [Arabidopsis thaliana] gi|30680751|ref|NP_850768.1| translocase of chloroplast 34 [Arabidopsis thaliana] gi|42573271|ref|NP_974732.1| translocase of chloroplast 34 [Arabidopsis thaliana] gi|166897637|sp|Q38906.2|TOC34_ARATH RecName: Full=Translocase of chloroplast 34, chloroplastic; Short=AtToc34; AltName: Full=34 kDa chloroplast outer envelope protein; AltName: Full=GTP-binding protein OEP34; AltName: Full=Plastid protein import 3 gi|10178039|dbj|BAB11522.1| GTP-binding protein [Arabidopsis thaliana] gi|110738722|dbj|BAF01285.1| GTP-binding protein [Arabidopsis thaliana] gi|199589346|gb|ACH90464.1| At5g05000 [Arabidopsis thaliana] gi|332003431|gb|AED90814.1| translocase of chloroplast 34 [Arabidopsis thaliana] gi|332003432|gb|AED90815.1| translocase of chloroplast 34 [Arabidopsis thaliana] gi|332003433|gb|AED90816.1| translocase of chloroplast 34 [Arabidopsis thaliana]

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 186/269 (69%), Positives = 221/269 (82%), Gaps = 5/269 (1%)

Query: 1   MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 60
           MGKGGVGKSSTVNS+IGEKA  VSTFQSEG RP +VSR+R+GFTLNI+DTPGLIEGGYVN
Sbjct: 44  MGKGGVGKSSTVNSVIGEKAAAVSTFQSEGLRPTLVSRTRSGFTLNIIDTPGLIEGGYVN 103

Query: 61  YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 120
             AI +IKRFLLN TIDVLLYVDRLDVYRVD+LD+Q+  AITD FG++IWK++ +VLTHA
Sbjct: 104 DQAINIIKRFLLNMTIDVLLYVDRLDVYRVDDLDRQVVGAITDAFGKEIWKKSALVLTHA 163

Query: 121 QLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEK 180
           Q S PD L+Y  F SKRS ALLK +     +KK+D+QG  +PV+LVENSGRC KNE+DEK
Sbjct: 164 QFSPPDGLNYNHFVSKRSNALLKVIQTGAQLKKQDLQGFSIPVILVENSGRCHKNESDEK 223

Query: 181 VLPNGTAWIPNLVKTITEVVLNGSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIK 240
           +LP GT+WIPNL   ITE+  NG+KA+ VDKKLVEGPNPNE+GK LIP +FAFQY  ++K
Sbjct: 224 ILPCGTSWIPNLFNKITEISFNGNKAIHVDKKLVEGPNPNERGKKLIPLMFAFQYLLVMK 283

Query: 241 PLIRAIKSDAAKEAKPVW-----ARASRR 264
           PL+RAIKSD ++E+KP W       ASRR
Sbjct: 284 PLVRAIKSDVSRESKPAWELRDSGLASRR 312

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307136094|gb|ADN33942.1| chloroplast outer envelope protein 34 [Cucumis melo subsp. melo]

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 184/258 (71%), Positives = 220/258 (85%)

Query: 1   MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 60
           MGKGGVGKSSTVNSIIGE+ V+VS FQSE PRPVMVSRSRAGFTLNI+DTPG+IEGGY+N
Sbjct: 43  MGKGGVGKSSTVNSIIGERVVSVSPFQSEVPRPVMVSRSRAGFTLNIIDTPGIIEGGYIN 102

Query: 61  YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 120
             A+++IKRFLLNKTID+LLYVDRLD YRVDNL+KQ+ +AITD+FG+ IW RALIVLTHA
Sbjct: 103 DQALEIIKRFLLNKTIDILLYVDRLDAYRVDNLEKQVIKAITDSFGKAIWSRALIVLTHA 162

Query: 121 QLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEK 180
           Q S PD L Y+ F S+RSEAL+K V      +K +IQG  +PVVLVENSGRC+KNE DEK
Sbjct: 163 QFSPPDGLPYDEFVSRRSEALVKTVRFGASFRKVEIQGLNIPVVLVENSGRCSKNEKDEK 222

Query: 181 VLPNGTAWIPNLVKTITEVVLNGSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIK 240
           VLPNG AWIP+LV+TIT VVL GSK++ VDK L+EGPNPN++GK+LIP IFA QYFF++K
Sbjct: 223 VLPNGIAWIPHLVETITTVVLKGSKSIFVDKTLIEGPNPNQRGKLLIPLIFALQYFFVVK 282

Query: 241 PLIRAIKSDAAKEAKPVW 258
           P+ RAI+ D A++ +P W
Sbjct: 283 PIKRAIRRDIARQIRPSW 300

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1151244|gb|AAD09203.1| GTP-binding protein [Arabidopsis thaliana] gi|11557975|emb|CAC17699.1| atToc34 protein [Arabidopsis thaliana]

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 185/269 (68%), Positives = 220/269 (81%), Gaps = 5/269 (1%)

Query: 1   MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 60
           MGKGGVGKSSTVNS+IGEKA  VSTFQSEG RP +VSR+R+GFTLNI+DTPGLIEGGYVN
Sbjct: 44  MGKGGVGKSSTVNSVIGEKAAAVSTFQSEGLRPTLVSRTRSGFTLNIIDTPGLIEGGYVN 103

Query: 61  YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 120
             AI +IKRFLLN TIDVLLYVDRLDVYRVD+LD+Q+  AITD FG++IWK++ +VLTHA
Sbjct: 104 DQAINIIKRFLLNMTIDVLLYVDRLDVYRVDDLDRQVVGAITDAFGKEIWKKSALVLTHA 163

Query: 121 QLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEK 180
           Q S PD L+Y  F SKRS ALLK +     +KK+D+QG  +PV+LVENSGRC KNE+DEK
Sbjct: 164 QFSPPDGLNYNHFVSKRSNALLKVIQTGAQLKKQDLQGFSIPVILVENSGRCHKNESDEK 223

Query: 181 VLPNGTAWIPNLVKTITEVVLNGSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIK 240
           +LP GT+WIPNL   ITE+  NG+KA+ VDKKLVEGPNPNE+GK LIP +FAFQY  ++K
Sbjct: 224 ILPCGTSWIPNLFNKITEISFNGNKAIHVDKKLVEGPNPNERGKKLIPLMFAFQYLLVMK 283

Query: 241 PLIRAIKSDAAKEAKPVW-----ARASRR 264
           PL+RAIKSD ++E+K  W       ASRR
Sbjct: 284 PLVRAIKSDVSRESKLAWELRDSGLASRR 312

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449526463|ref|XP_004170233.1| PREDICTED: translocase of chloroplast 34-like [Cucumis sativus]

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 182/258 (70%), Positives = 221/258 (85%)

Query: 1   MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 60
           MGKGGVGKSSTVNSIIGE+AV+VS FQSE PRPVMVSRSRAGFTLNI+DTPG+IEGGY+N
Sbjct: 43  MGKGGVGKSSTVNSIIGERAVSVSPFQSEVPRPVMVSRSRAGFTLNIIDTPGIIEGGYIN 102

Query: 61  YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 120
             A+++IKRFLLNKTID+LLYVDRLD YRVDNL+KQ+ +AIT++FG+ IW+RAL+VLTHA
Sbjct: 103 DQALEIIKRFLLNKTIDILLYVDRLDAYRVDNLEKQVIKAITNSFGKVIWRRALVVLTHA 162

Query: 121 QLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEK 180
           Q S PD L Y+ F S+RS ALL+ V       + D Q   +PVVLVENSGRC+KNE DEK
Sbjct: 163 QFSPPDGLPYDEFVSRRSAALLETVRTGGSFIRNDAQVLSIPVVLVENSGRCSKNEKDEK 222

Query: 181 VLPNGTAWIPNLVKTITEVVLNGSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIK 240
           VLPNG AWIP+LV+TIT+VVLNGSK++ VDKKL+EGPNPN++GK+LIPFIFA QY F++K
Sbjct: 223 VLPNGIAWIPHLVETITKVVLNGSKSIFVDKKLIEGPNPNQRGKMLIPFIFALQYLFVVK 282

Query: 241 PLIRAIKSDAAKEAKPVW 258
           P+ RAI+SD   +++P W
Sbjct: 283 PIKRAIRSDILTQSRPSW 300

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21594231|gb|AAM65983.1| GTP-binding protein [Arabidopsis thaliana]

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 184/269 (68%), Positives = 220/269 (81%), Gaps = 5/269 (1%)

Query: 1   MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 60
           +GK GVGKSSTVNS+IGEKA  VSTFQSEG RP +VSR+R+GFTLNI+DTPGLIEGGYVN
Sbjct: 44  IGKSGVGKSSTVNSVIGEKAAAVSTFQSEGLRPTLVSRTRSGFTLNIIDTPGLIEGGYVN 103

Query: 61  YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 120
             AI +IKRFLLN TIDVLLYVDRLDVYRVD+LD+Q+  AITD FG++IWK++ +VLTHA
Sbjct: 104 DQAINIIKRFLLNMTIDVLLYVDRLDVYRVDDLDRQVVGAITDAFGKEIWKKSALVLTHA 163

Query: 121 QLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEK 180
           Q S PD L+Y  F SKRS ALLK +     +KK+D+QG  +PV+LVENSGRC KNE+DEK
Sbjct: 164 QFSPPDGLNYNHFVSKRSNALLKVIQTGAQLKKQDLQGFSIPVILVENSGRCHKNESDEK 223

Query: 181 VLPNGTAWIPNLVKTITEVVLNGSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIK 240
           +LP GT+WIPNL   ITE+  NG+KA+ VDKKLVEGPNPNE+GK LIP +FAFQY  ++K
Sbjct: 224 ILPCGTSWIPNLFNKITEISFNGNKAIHVDKKLVEGPNPNERGKKLIPLMFAFQYLLVMK 283

Query: 241 PLIRAIKSDAAKEAKPVW-----ARASRR 264
           PL+RAIKSD ++E+KP W       ASRR
Sbjct: 284 PLVRAIKSDVSRESKPAWELRDSGLASRR 312

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456809|ref|XP_004146141.1| PREDICTED: translocase of chloroplast 34-like [Cucumis sativus]

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 181/258 (70%), Positives = 219/258 (84%)

Query: 1   MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 60
           MGKGGVGKSSTVNSIIGE+AV+VS FQSE PRPVMVSRSRAGFTLNI+DTPG+IEGGY+N
Sbjct: 43  MGKGGVGKSSTVNSIIGERAVSVSPFQSEVPRPVMVSRSRAGFTLNIIDTPGIIEGGYIN 102

Query: 61  YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 120
             A+++IKRFLLNKTID+LLYVDRLD YRVDNL+KQ+ +AIT++FG+ IW+RAL+VLTHA
Sbjct: 103 DQALEIIKRFLLNKTIDILLYVDRLDAYRVDNLEKQVIKAITNSFGKVIWRRALVVLTHA 162

Query: 121 QLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEK 180
           Q S PD L Y+ F S+RS ALL+ V       + D Q   +PVVLVENSGRC+KNE DEK
Sbjct: 163 QFSPPDGLPYDEFVSRRSAALLETVRTGGSFIRNDAQVLSIPVVLVENSGRCSKNEKDEK 222

Query: 181 VLPNGTAWIPNLVKTITEVVLNGSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIK 240
           VLPNG AWIP LV+TIT+VVLNGSK++ VDKKL+EGPNPN++GK+LIPFIF  QY F++K
Sbjct: 223 VLPNGIAWIPYLVETITKVVLNGSKSIFVDKKLIEGPNPNQRGKMLIPFIFVLQYLFVVK 282

Query: 241 PLIRAIKSDAAKEAKPVW 258
           P+ RAI+SD   +++P W
Sbjct: 283 PIKRAIRSDILTQSRPSW 300

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454878|ref|XP_002278775.1| PREDICTED: translocase of chloroplast 34, chloroplastic [Vitis vinifera] gi|297737377|emb|CBI26578.3| unnamed protein product [Vitis vinifera]

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 184/265 (69%), Positives = 222/265 (83%), Gaps = 1/265 (0%)

Query: 1   MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 60
           MGKGGVGKSSTVNSI+GE+AVTV+ FQSEGPRPVMVSRS+AGFTLNI+DTPGL+EGGYVN
Sbjct: 43  MGKGGVGKSSTVNSILGERAVTVNAFQSEGPRPVMVSRSQAGFTLNIIDTPGLVEGGYVN 102

Query: 61  YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 120
             A+++IKRFLL+KTIDVLLYVDRLDVYR DNLDKQ+ +AITD+FG+QIW+R ++VLTH 
Sbjct: 103 DQAVEIIKRFLLDKTIDVLLYVDRLDVYRTDNLDKQVVKAITDSFGKQIWRRGVVVLTHG 162

Query: 121 QLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEK 180
           QLS PD L+YE F S+RSEAL++ V     ++K+D+Q   +PV+ VENSGRC KNE+DEK
Sbjct: 163 QLSPPDGLNYEDFFSRRSEALMRVVRLGAGIRKQDLQDFAIPVIPVENSGRCNKNESDEK 222

Query: 181 VLPNGTAWIPNLVKTITEVVLNGSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIK 240
           +LPNGTAWIPNLVKTI ++V NGSKA+LVDKKL+EGPNPN++GK LIP I AFQY  ++K
Sbjct: 223 ILPNGTAWIPNLVKTIIDLVSNGSKAILVDKKLIEGPNPNKRGKFLIPLIVAFQY-LVVK 281

Query: 241 PLIRAIKSDAAKEAKPVWARASRRL 265
            + R IK D  KE K  W   S  L
Sbjct: 282 QIQRTIKDDVKKEPKAPWELRSANL 306

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
TAIR|locus:2175259	313	TOC34 "translocon at the outer	0.973	0.824	0.705	7.4e-98
UNIPROTKB|Q41009	310	TOC34 "Translocase of chloropl	0.969	0.829	0.682	3.4e-93
TAIR|locus:2204923	297	TOC33 "translocon at the outer	0.966	0.861	0.610	5.2e-81
TAIR|locus:2089348	1089	TOC120 "translocon outer compl	0.762	0.185	0.334	1.1e-24
TAIR|locus:2059929	1206	TOC132 "multimeric translocon	0.766	0.168	0.336	2.4e-23
TAIR|locus:2132298	1503	TOC159 "translocon at the oute	0.784	0.138	0.327	1.1e-22
DICTYBASE|DDB_G0275441	449	gtpA "GTP-binding protein, HSR	0.747	0.440	0.330	3.5e-22
TAIR|locus:2149204	793	Toc90 "translocon at the outer	0.766	0.255	0.313	5.7e-21
ZFIN|ZDB-GENE-091204-76	572	si:ch73-308m11.1 "si:ch73-308m	0.543	0.251	0.267	3.5e-06
ZFIN|ZDB-GENE-080204-41	231	zgc:172091 "zgc:172091" [Danio	0.483	0.554	0.311	7.3e-06

TAIR|locus:2175259 TOC34 "translocon at the outer envelope membrane of chloroplasts 34" [Arabidopsis thaliana (taxid:3702)]

 Score = 972 (347.2 bits), Expect = 7.4e-98, P = 7.4e-98
 Identities = 182/258 (70%), Positives = 217/258 (84%)

Query:     1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 60
             MGKGGVGKSSTVNS+IGEKA  VSTFQSEG RP +VSR+R+GFTLNI+DTPGLIEGGYVN
Sbjct:    44 MGKGGVGKSSTVNSVIGEKAAAVSTFQSEGLRPTLVSRTRSGFTLNIIDTPGLIEGGYVN 103

Query:    61 YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 120
               AI +IKRFLLN TIDVLLYVDRLDVYRVD+LD+Q+  AITD FG++IWK++ +VLTHA
Sbjct:   104 DQAINIIKRFLLNMTIDVLLYVDRLDVYRVDDLDRQVVGAITDAFGKEIWKKSALVLTHA 163

Query:   121 QLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEK 180
             Q S PD L+Y  F SKRS ALLK +     +KK+D+QG  +PV+LVENSGRC KNE+DEK
Sbjct:   164 QFSPPDGLNYNHFVSKRSNALLKVIQTGAQLKKQDLQGFSIPVILVENSGRCHKNESDEK 223

Query:   181 VLPNGTAWIPNLVKTITEVVLNGSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIK 240
             +LP GT+WIPNL   ITE+  NG+KA+ VDKKLVEGPNPNE+GK LIP +FAFQY  ++K
Sbjct:   224 ILPCGTSWIPNLFNKITEISFNGNKAIHVDKKLVEGPNPNERGKKLIPLMFAFQYLLVMK 283

Query:   241 PLIRAIKSDAAKEAKPVW 258
             PL+RAIKSD ++E+KP W
Sbjct:   284 PLVRAIKSDVSRESKPAW 301

GO:0005525 "GTP binding" evidence=IEA;TAS

GO:0005622 "intracellular" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0009707 "chloroplast outer membrane" evidence=IDA;TAS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0003924 "GTPase activity" evidence=TAS

GO:0045036 "protein targeting to chloroplast" evidence=RCA;TAS

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

GO:0009536 "plastid" evidence=IDA

GO:0019750 "chloroplast localization" evidence=TAS

UNIPROTKB|Q41009 TOC34 "Translocase of chloroplast 34" [Pisum sativum (taxid:3888)]

 Score = 928 (331.7 bits), Expect = 3.4e-93, P = 3.4e-93
 Identities = 176/258 (68%), Positives = 211/258 (81%)

Query:     1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 60
             MGKGGVGKSSTVNSIIGE+ V++S FQSEGPRPVMVSRSRAGFTLNI+DTPGLIEGGY+N
Sbjct:    45 MGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYIN 104

Query:    61 YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 120
               A+ +IK FLL+KTIDVLLYVDRLD YRVDNLDK + +AITD+FG+ IW +A++ LTHA
Sbjct:   105 DMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHA 164

Query:   121 QLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEK 180
             Q S PD L Y+ F SKRSEALL+ V     +KK D Q S +PVVL+ENSGRC KN++DEK
Sbjct:   165 QFSPPDGLPYDEFFSKRSEALLQVVRSGASLKK-DAQASDIPVVLIENSGRCNKNDSDEK 223

Query:   181 VLPNGTAWIPNLVKTITEVVLNGSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIK 240
             VLPNG AWIP+LV+TITEV LN S+++ VDK L++GPNPN++GK+ IP IFA QY F+ K
Sbjct:   224 VLPNGIAWIPHLVQTITEVALNKSESIFVDKNLIDGPNPNQRGKLWIPLIFALQYLFLAK 283

Query:   241 PLIRAIKSDAAKEAKPVW 258
             P+   I+ D A E KP W
Sbjct:   284 PIEALIRRDIATETKPAW 301

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2204923 TOC33 "translocon at the outer envelope membrane of chloroplasts 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 813 (291.2 bits), Expect = 5.2e-81, P = 5.2e-81
 Identities = 157/257 (61%), Positives = 197/257 (76%)

Query:     1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 60
             +GKGGVGKSSTVNS+IGE+ V VS FQ+EG RPVMVSR+  GFT+NI+DTPGL+E GYVN
Sbjct:    42 LGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVN 101

Query:    61 YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 120
             + A++LIK FL+N+TIDVLLYVDRLDVYRVD LDKQ+  AIT  FG++IW + L+VLTHA
Sbjct:   102 HQALELIKGFLVNRTIDVLLYVDRLDVYRVDELDKQVVIAITQTFGKEIWCKTLLVLTHA 161

Query:   121 QLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEK 180
             Q S PD L YE F SKRS++LLK +   + M+K++ + S + VV  ENSGRC+KN+ DEK
Sbjct:   162 QFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEK 221

Query:   181 VLPNGTAWIPNLVKTITEVVLNGSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIK 240
              LPNG AWIPNLVK IT+V  N  KA+ VDKK+V+G   ++KGK LIP I   QY  I+K
Sbjct:   222 ALPNGEAWIPNLVKAITDVATNQRKAIHVDKKMVDGSYSDDKGKKLIPLIIGAQYL-IVK 280

Query:   241 PLIRAIKSDAAKEAKPV 257
              +  AI++D     KP+
Sbjct:   281 MIQGAIRNDIKTSGKPL 297

GO:0005525 "GTP binding" evidence=IEA;ISS;IDA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0009707 "chloroplast outer membrane" evidence=IEA;IDA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0003924 "GTPase activity" evidence=IDA

GO:0042802 "identical protein binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0009507 "chloroplast" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0045036 "protein targeting to chloroplast" evidence=TAS

TAIR|locus:2089348 TOC120 "translocon outer complex protein 120" [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 1.1e-24, P = 1.1e-24
 Identities = 73/218 (33%), Positives = 116/218 (53%)

Query:     1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVM-VSRSRAGFTLNIVDTPGLIEGG-- 57
             +GK GVGKS+T+NSI  E  ++   FQ  G + V  +     G  + ++DTPGL+     
Sbjct:   462 LGKSGVGKSATINSIFDELKISTDAFQV-GTKKVQDIEGFVQGIKVRVIDTPGLLPSWSD 520

Query:    58 -YVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIV 116
              + N   ++ ++ F+     D++LY+DRLD+   D+ D  + R ITD FG  IW  A++ 
Sbjct:   521 QHKNEKILKSVRAFIKKSPPDIVLYLDRLDMQSRDSGDMPLLRTITDVFGPSIWFNAIVG 580

Query:   117 LTHAQLSLPD-----RLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGR 171
             LTHA  + PD        Y++F ++RS  + + +  +      D++    PV LVEN   
Sbjct:   581 LTHAASAPPDGPNGTASSYDMFVTQRSHVIQQAIRQAAG----DMR-LMNPVSLVENHSA 635

Query:   172 CAKNENDEKVLPNGTAWIPNLVK-TITEVVLNGSKALL 208
             C  N   ++VLPNG  W P+L+  +    +L  + ALL
Sbjct:   636 CRTNRAGQRVLPNGQVWKPHLLLLSFASKILAEANALL 673

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009707 "chloroplast outer membrane" evidence=ISS;IDA

GO:0016817 "hydrolase activity, acting on acid anhydrides" evidence=IEA

GO:0045036 "protein targeting to chloroplast" evidence=RCA;IDA

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2059929 TOC132 "multimeric translocon complex in the outer envelope membrane 132" [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 2.4e-23, P = 2.4e-23
 Identities = 73/217 (33%), Positives = 109/217 (50%)

Query:     1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY-- 58
             +GK GVGKS+T+NSI  E       FQ    R   V     G  + ++DTPGL+      
Sbjct:   580 LGKSGVGKSATINSIFDEVKFCTDAFQMGTKRVQDVEGLVQGIKVRVIDTPGLLPSWSDQ 639

Query:    59 -VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVL 117
               N   +  +K F+     D++LY+DRLD+   D+ D  + R I+D FG  IW  A++ L
Sbjct:   640 AKNEKILNSVKAFIKKNPPDIVLYLDRLDMQSRDSGDMPLLRTISDVFGPSIWFNAIVGL 699

Query:   118 THAQLSLPD-----RLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRC 172
             THA    PD        Y++F ++RS  + + +  +      D++    PV LVEN   C
Sbjct:   700 THAASVPPDGPNGTASSYDMFVTQRSHVIQQAIRQAAG----DMR-LMNPVSLVENHSAC 754

Query:   173 AKNENDEKVLPNGTAWIPNLVK-TITEVVLNGSKALL 208
               N   ++VLPNG  W P+L+  +    +L  + ALL
Sbjct:   755 RTNRAGQRVLPNGQVWKPHLLLLSFASKILAEANALL 791

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009707 "chloroplast outer membrane" evidence=ISS;IDA

GO:0016817 "hydrolase activity, acting on acid anhydrides" evidence=IEA

GO:0004888 "transmembrane signaling receptor activity" evidence=ISS

GO:0045036 "protein targeting to chloroplast" evidence=IGI;RCA

GO:0016020 "membrane" evidence=IDA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2132298 TOC159 "translocon at the outer envelope membrane of chloroplasts 159" [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 1.1e-22, P = 1.1e-22
 Identities = 71/217 (32%), Positives = 107/217 (49%)

Query:     1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY-- 58
             +GK GVGKS+T+NSI+G +  ++  F         +S +  G  +  +DTPGL       
Sbjct:   861 LGKAGVGKSATINSILGNQIASIDAFGLSTTSVREISGTVNGVKITFIDTPGLKSAAMDQ 920

Query:    59 -VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVL 117
               N   +  +K+ +     D++LYVDRLD    D  +  + R IT + G  IWK A++ L
Sbjct:   921 STNAKMLSSVKKVMKKCPPDIVLYVDRLDTQTRDLNNLPLLRTITASLGTSIWKNAIVTL 980

Query:   118 THAQLSLPDR-----LDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRC 172
             THA  + PD      L Y+VF ++ S  + + +  +    +        PV LVEN   C
Sbjct:   981 THAASAPPDGPSGTPLSYDVFVAQCSHIVQQSIGQAVGDLRLMNPSLMNPVSLVENHPLC 1040

Query:   173 AKNENDEKVLPNGTAWIPNLVKTITEV-VLNGSKALL 208
              KN    KVLPNG  W   L+     + VL+ + +LL
Sbjct:  1041 RKNREGVKVLPNGQTWRSQLLLLCYSLKVLSETNSLL 1077

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016817 "hydrolase activity, acting on acid anhydrides" evidence=IEA

GO:0004888 "transmembrane signaling receptor activity" evidence=IDA

GO:0009707 "chloroplast outer membrane" evidence=IDA

GO:0045036 "protein targeting to chloroplast" evidence=RCA;IMP;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0016020 "membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0003924 "GTPase activity" evidence=TAS

GO:0009536 "plastid" evidence=IDA

DICTYBASE|DDB_G0275441 gtpA "GTP-binding protein, HSR1-related domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 262 (97.3 bits), Expect = 3.5e-22, P = 3.5e-22
 Identities = 71/215 (33%), Positives = 113/215 (52%)

Query:     1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIE--GGY 58
             +G+ GVGKSST+N++ G   + V + +S    P   SR   GF LNI+DTPG ++  G  
Sbjct:   157 LGRTGVGKSSTLNTVFGID-IPVHSSESCTQDPFTYSRVVNGFKLNIIDTPGFLDSQGEL 215

Query:    59 VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLT 118
             V+ + +  I+R+L  KTI  +L+V++    R D   + +    T+  G Q+W+ A +VLT
Sbjct:   216 VDSNNMIKIQRYLSGKTIHCVLFVEKFTETRFDGAHQLVINQFTEKLGPQLWRNAAVVLT 275

Query:   119 HAQLSLPDRLDYEVF--------CSKRSEA----LLKFVSPS-TWMKKKDIQGSFVPVVL 165
             +A   LPD   Y+ F          K  EA      KF +     + + D     +PV  
Sbjct:   276 YANSVLPDSC-YDGFDEEDDVGPWKKHYEARALQFRKFFAGILAQLPQDDYPPKHIPVYA 334

Query:   166 VENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVV 200
             +ENS RC +NE  ++VL +GT  +  L+  + ++V
Sbjct:   335 MENSRRCKRNEQGQRVLIDGTPCLHLLISGLLKMV 369

GO:0005525 "GTP binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0000166 "nucleotide binding" evidence=IEA

TAIR|locus:2149204 Toc90 "translocon at the outer envelope membrane of chloroplasts 90" [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 5.7e-21, P = 5.7e-21
 Identities = 68/217 (31%), Positives = 109/217 (50%)

Query:     1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL--IEGGY 58
             +GK GVGKS+T+NSI G+       F+    R   V  + +G  +  +DTPG   +    
Sbjct:   172 LGKTGVGKSATINSIFGQPKSETDAFRPGTDRIEEVMGTVSGVKVTFIDTPGFHPLSSSS 231

Query:    59 V--NYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIV 116
                N   +  IKR++  +  DV+LY+DRLD+  +   D  + + IT+ FG  IW   ++V
Sbjct:   232 TRKNRKILLSIKRYVKKRPPDVVLYLDRLDMIDMRYSDFSLLQLITEIFGAAIWLNTILV 291

Query:   117 LTHAQLSLPDR----LDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRC 172
             +TH+  +   R    ++YE +  +R + +  ++  +    K +      PV+LVEN   C
Sbjct:   292 MTHSAATTEGRNGQSVNYESYVGQRMDVVQHYIHQAVSDTKLEN-----PVLLVENHPSC 346

Query:   173 AKNENDEKVLPNGTAWIPNLV-KTITEVVLNGSKALL 208
              KN   E VLPNG  W P  +   +   VL   ++LL
Sbjct:   347 KKNLAGEYVLPNGVVWKPQFMFLCVCTKVLGDVQSLL 383

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009707 "chloroplast outer membrane" evidence=ISS

GO:0045036 "protein targeting to chloroplast" evidence=IMP

ZFIN|ZDB-GENE-091204-76 si:ch73-308m11.1 "si:ch73-308m11.1" [Danio rerio (taxid:7955)]

 Score = 135 (52.6 bits), Expect = 3.5e-06, P = 3.5e-06
 Identities = 39/146 (26%), Positives = 71/146 (48%)

Query:     1 MGKGGVGKSSTVNSIIGEKAV-TVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV 59
             +GK GVGKS+T N+IIG+    + S+ +S+       +R R+   ++++DTPGL +    
Sbjct:   269 LGKTGVGKSATANTIIGKNRFKSTSSSRSQTKLCQTETRLRSSKQISVIDTPGLYDTELS 328

Query:    60 NYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTH 119
                 I  I + +   +     ++  + V R    +K   + + + FGEQ+ K ++I+ TH
Sbjct:   329 EKEIITEIAKCITYASPGPHAFIIVIKVGRFTEEEKNTIQQLKEVFGEQMEKYSMIIFTH 388

Query:   120 AQLSLPDRLDYEVFCSKRSEALLKFV 145
                 L ++   E F       L + V
Sbjct:   389 KD-QLEEKKTIEQFLQDSDPGLKELV 413

GO:0005525 "GTP binding" evidence=IEA

ZFIN|ZDB-GENE-080204-41 zgc:172091 "zgc:172091" [Danio rerio (taxid:7955)]

 Score = 125 (49.1 bits), Expect = 7.3e-06, P = 7.3e-06
 Identities = 42/135 (31%), Positives = 61/135 (45%)

Query:     1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTL-NIVDTPGLIEGGYV 59
             +G  G GKS+T N+I+G              R  +   +R G  + +++DTPGL +    
Sbjct:     2 LGMTGAGKSATGNTILGMDVFEEDLSPGSVTRQSVKKMARKGSRMVSVIDTPGLQDSSAN 61

Query:    60 NYHAIQLIKRFLLNKTID--VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVL 117
                    IK  L   T    V L V R DV   D + K + R I DNFGE+  +  ++V 
Sbjct:    62 EREVKDEIKTCLELSTPGPHVFLLVIRADVRLTDEVKKTV-RWIQDNFGEKSARYTIVVF 120

Query:   118 THAQL---SLPDRLD 129
             TH      SL D ++
Sbjct:   121 THVDSLTKSLKDHIE 135

GO:0005525 "GTP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q41009	TOC34_PEA	3, ., 6, ., 5, ., -	0.6821	0.9698	0.8290	N/A	no
Q38906	TOC34_ARATH	3, ., 6, ., 5, ., -	0.6914	0.9962	0.8434	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.5	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	265
TIGR00991	313	TIGR00991, 3a0901s02IAP34, GTP-binding protein (Ch	1e-154
cd01853	248	cd01853, Toc34_like, Translocon at the Outer-envel	1e-103
pfam04548	211	pfam04548, AIG1, AIG1 family	7e-42
TIGR00993	763	TIGR00993, 3a0901s04IAP86, chloroplast protein imp	1e-32
cd01852	201	cd01852, AIG1, AvrRpt2-Induced Gene 1 (AIG1)	8e-12
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	2e-10
pfam01926	117	pfam01926, MMR_HSR1, 50S ribosome-binding GTPase	6e-08
COG3596	296	COG3596, COG3596, Predicted GTPase [General functi	6e-08
cd00880	161	cd00880, Era_like, E	1e-04
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	4e-04

>gnl|CDD|130064 TIGR00991, 3a0901s02IAP34, GTP-binding protein (Chloroplast Envelope Protein Translocase)

 Score =  430 bits (1108), Expect = e-154
 Identities = 174/258 (67%), Positives = 208/258 (80%)

Query: 1   MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 60
           MGKGGVGKSSTVNSIIGE+  TVS FQSEG RP+MVSR+RAGFTLNI+DTPGLIEGGY+N
Sbjct: 44  MGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYIN 103

Query: 61  YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 120
             A+ +IKRFLL KTIDVLLYVDRLD YRVD LD Q+ RAITD+FG+ IW+++L+VLTHA
Sbjct: 104 DQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHA 163

Query: 121 QLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEK 180
           Q S PD L+Y  F SKRSEALL+ +     +KK+D Q   +PV LVENSGRC KNE+DEK
Sbjct: 164 QFSPPDGLEYNDFFSKRSEALLRVIHSGAGLKKRDYQDFPIPVALVENSGRCKKNESDEK 223

Query: 181 VLPNGTAWIPNLVKTITEVVLNGSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIK 240
           +LP+GT WIP L+K ITEV+ NGSK + VDKKL++GPNPN +GK+ IP IFA QY  ++K
Sbjct: 224 ILPDGTPWIPKLMKEITEVISNGSKPIHVDKKLIDGPNPNNRGKMFIPLIFAVQYLLVVK 283

Query: 241 PLIRAIKSDAAKEAKPVW 258
           P+ RAI +D A E K  W
Sbjct: 284 PIRRAIHADIANEKKDAW 301

[Transport and binding proteins, Nucleosides, purines and pyrimidines]. Length = 313

>gnl|CDD|206652 cd01853, Toc34_like, Translocon at the Outer-envelope membrane of Chloroplasts 34-like (Toc34-like)

 Score =  300 bits (769), Expect = e-103
 Identities = 114/212 (53%), Positives = 137/212 (64%), Gaps = 2/212 (0%)

Query: 1   MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG--GY 58
           +GK GVGKSST+NSI GE+ V+VS FQSE  RP  VSR+  GF LNI+DTPGL+E     
Sbjct: 37  LGKTGVGKSSTINSIFGERKVSVSAFQSETLRPREVSRTVDGFKLNIIDTPGLLESQDQR 96

Query: 59  VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLT 118
           VN   + +IKRFL  KTIDV+LYVDRLD+YRVDNLD  + RAITD+FG  IW+ A++VLT
Sbjct: 97  VNRKILSIIKRFLKKKTIDVVLYVDRLDMYRVDNLDVPLLRAITDSFGPSIWRNAIVVLT 156

Query: 119 HAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNEND 178
           HAQ S PD  +   F   R  A  K +      +         PVVLVENS RC KN   
Sbjct: 157 HAQSSPPDGPNGTPFSYDRFVAQRKHIVQQAIQQAAGDPDLENPVVLVENSPRCKKNRQG 216

Query: 179 EKVLPNGTAWIPNLVKTITEVVLNGSKALLVD 210
           EKVLPNGT W+P L+   T V L     +L+D
Sbjct: 217 EKVLPNGTVWLPQLLLLCTSVKLLSEANILLD 248

The Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. Length = 248

>gnl|CDD|218141 pfam04548, AIG1, AIG1 family

 Score =  142 bits (360), Expect = 7e-42
 Identities = 56/213 (26%), Positives = 91/213 (42%), Gaps = 32/213 (15%)

Query: 1   MGKGGVGKSSTVNSIIGEKAVTVSTFQSEG------PRPVMVSRSRAGFTLNIVDTPGLI 54
           +GK G GKS+T NSI+G KA     F+S+           +VSR+  G  +N++DTPGL 
Sbjct: 6   VGKTGNGKSATGNSILGRKA-----FESKLRAQGVTKTCQLVSRTWDGRIINVIDTPGLF 60

Query: 55  EGGYVNYHAIQLIKR-FLLNKT-IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR 112
           +    N    + I R  LL +     +L V  L + R    ++Q  R + + FG +I   
Sbjct: 61  DLSVSNDFISKEIIRCLLLAEPGPHAVLLV--LSLGRFTEEEEQALRTLQELFGSKILDY 118

Query: 113 ALIVLTHAQLSLPDRLDYEVFCSKRS-EALLKFVSP------------STWMKKKDIQG- 158
            ++V T     L D    + + S    E L + +                  K++ +Q  
Sbjct: 119 MIVVFTRKD-DLEDD-SLDDYLSDGCPEFLKEVLRECGGRYVLFNNKADGEEKEEQVQQL 176

Query: 159 -SFVPVVLVENSGRCAKNENDEKVLPNGTAWIP 190
            + V  ++ EN G+   N+  EK+   G     
Sbjct: 177 LALVEAIVKENGGKPYTNDLYEKIKEEGERLRE 209

Arabidopsis protein AIG1 appears to be involved in plant resistance to bacteria. Length = 211

>gnl|CDD|233224 TIGR00993, 3a0901s04IAP86, chloroplast protein import component Toc86/159, G and M domains

 Score =  125 bits (315), Expect = 1e-32
 Identities = 71/201 (35%), Positives = 102/201 (50%), Gaps = 8/201 (3%)

Query: 1   MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY-- 58
           +GK GVGKS+T+NSI GE   +   F         +     G  + ++DTPGL       
Sbjct: 124 LGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQ 183

Query: 59  -VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVL 117
             N   +  +K+F+     D++LYVDRLD+   D+ D  + R ITD  G  IW  A++ L
Sbjct: 184 SKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTL 243

Query: 118 THAQLSLPDR-----LDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRC 172
           THA  + PD      L Y+VF ++RS  + + +  +    +        PV LVEN   C
Sbjct: 244 THAASAPPDGPNGTPLSYDVFVAQRSHIVQQAIGQAVGDLRLMNPNLMNPVSLVENHPAC 303

Query: 173 AKNENDEKVLPNGTAWIPNLV 193
            KN   +KVLPNG  W P+L+
Sbjct: 304 RKNRAGQKVLPNGQVWKPHLL 324

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M [Transport and binding proteins, Amino acids, peptides and amines]. Length = 763

>gnl|CDD|206651 cd01852, AIG1, AvrRpt2-Induced Gene 1 (AIG1)

 Score = 62.2 bits (152), Expect = 8e-12
 Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 15/128 (11%)

Query: 1   MGKGGVGKSSTVNSIIGEKAVTVSTFQSEG-PRPV-----MVSRSRAGFTLNIVDTPGLI 54
           +GK G GKS+T N+I+G K      F+S+     V       S    G  +N++DTPGL 
Sbjct: 6   VGKTGNGKSATGNTILGRKV-----FESKLSASGVTKTCQKESAVWDGRRVNVIDTPGLF 60

Query: 55  EGGYVN-YHAIQLIKRFLLNKT-IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR 112
           +        + ++I+   L+       L V  L  +  +  ++Q    + + FGE++   
Sbjct: 61  DTSVSPEQLSKEIIRCLSLSAPGPHAFLLVVPLGRFTEE--EEQAVEELQELFGEKVLDH 118

Query: 113 ALIVLTHA 120
            +++ T  
Sbjct: 119 TIVLFTRG 126

This group represents Arabidoposis protein AIG1 (avrRpt2-induced gene 1) that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). Length = 201

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 57.9 bits (140), Expect = 2e-10
 Identities = 30/141 (21%), Positives = 58/141 (41%), Gaps = 10/141 (7%)

Query: 1   MGKGGVGKSSTVNSIIGEKAVTVS--TFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY 58
           +G+GGVGKSS +N+++G +   VS     +  P   +    +    L +VDTPGL E G 
Sbjct: 3   VGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGLDEFGG 62

Query: 59  VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLT 118
                 +L +  L  +  D++L V           ++     I     ++     ++V  
Sbjct: 63  --LGREELARLLL--RGADLILLVVDSTDRES---EEDAKLLILRRLRKE-GIPIILVGN 114

Query: 119 HAQLSLPDRLDYEVFCSKRSE 139
              L     ++  +   + ++
Sbjct: 115 KIDLLEEREVEELLRLEELAK 135

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase

 Score = 49.6 bits (119), Expect = 6e-08
 Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 14/122 (11%)

Query: 1   MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGP---RPVMVSRSRAGFTLNIVDTPGLIEGG 57
           +G+  VGKS+ +N++ G K   VS +    P   R  ++     G  + +VDTPGLIEG 
Sbjct: 5   VGRPNVGKSTLINALTGAKVAIVSDY----PGTTRDPILGVLGLGRQIILVDTPGLIEGA 60

Query: 58  YVNYHAIQLIKRFLLN-KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIV 116
                 ++   RFL   +  D++L V  +D         +    I +   +   K  ++V
Sbjct: 61  SEG-KGVEGFNRFLEAIREADLILLV--VD---ASEGLTEDDEEILEELEKLPKKPIILV 114

Query: 117 LT 118
           L 
Sbjct: 115 LN 116

The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117

>gnl|CDD|226124 COG3596, COG3596, Predicted GTPase [General function prediction only]

 Score = 52.1 bits (125), Expect = 6e-08
 Identities = 42/158 (26%), Positives = 62/158 (39%), Gaps = 16/158 (10%)

Query: 1   MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 60
           MG  G GKSS +N++   +   VS           +  S  G  L + DTPGL +G   +
Sbjct: 45  MGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKD 104

Query: 61  YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 120
               QL +   L K   VL  +   D  R    D+   R +       + KR L V+T A
Sbjct: 105 AEHRQLYRD-YLPKLDLVLWLIKADD--RALGTDEDFLRDVI---ILGLDKRVLFVVTQA 158

Query: 121 QLSLPDR-LDY---------EVFCSKRSEALLKFVSPS 148
             + P R  D          + F  +++EAL +     
Sbjct: 159 DRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQEV 196

Length = 296

>gnl|CDD|206646 cd00880, Era_like, E

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 10/122 (8%)

Query: 2   GKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVS-RSRAGFTLNIVDTPGLIEGGYVN 60
           G+  VGKSS +N+++G+    VS        PV           + ++DTPGL E G + 
Sbjct: 4   GRPNVGKSSLLNALLGQNVGIVSPIPGTTRDPVRKEWELLPLGPVVLIDTPGLDEEGGLG 63

Query: 61  YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 120
              ++  ++       D++L V   D+  V+  + ++             K  L+VL   
Sbjct: 64  RERVEEARQVA--DRADLVLLVVDSDLTPVE-EEAKLGLLRERG------KPVLLVLNKI 114

Query: 121 QL 122
            L
Sbjct: 115 DL 116

coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 16/90 (17%), Positives = 38/90 (42%), Gaps = 8/90 (8%)

Query: 1  MGKGGVGKSSTVNSIIGEKAVTVS----TFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG 56
          +G   VGKS+ +N ++G K         T ++     +        +  N++DT G  + 
Sbjct: 7  VGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKT--YKFNLLDTAGQEDY 64

Query: 57 GYVNYHAIQLIKRFLLNKTIDVLLYVDRLD 86
            +     + ++  L  +  D+++ V  ++
Sbjct: 65 DAIRRLYYRAVESSL--RVFDIVILVLDVE 92

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	265
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	100.0
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	100.0
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	100.0
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.97
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.95
COG3596	296	Predicted GTPase [General function prediction only	99.84
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.83
COG1159	298	Era GTPase [General function prediction only]	99.78
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.77
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.75
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.74
COG1160	444	Predicted GTPases [General function prediction onl	99.73
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.69
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.68
COG1160	444	Predicted GTPases [General function prediction onl	99.68
PRK00089	292	era GTPase Era; Reviewed	99.67
COG0486	454	ThdF Predicted GTPase [General function prediction	99.66
PRK15494	339	era GTPase Era; Provisional	99.65
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.64
PRK03003	472	GTP-binding protein Der; Reviewed	99.64
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.64
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.63
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.62
PRK12298	390	obgE GTPase CgtA; Reviewed	99.62
PRK12299	335	obgE GTPase CgtA; Reviewed	99.62
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.62
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.61
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.61
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.61
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.6
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.6
COG0218	200	Predicted GTPase [General function prediction only	99.6
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.6
PRK00093	435	GTP-binding protein Der; Reviewed	99.59
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.58
COG1084	346	Predicted GTPase [General function prediction only	99.58
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.58
PRK00093	435	GTP-binding protein Der; Reviewed	99.57
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.56
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.56
PRK03003	472	GTP-binding protein Der; Reviewed	99.55
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.54
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.53
PRK12297	424	obgE GTPase CgtA; Reviewed	99.53
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.52
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.51
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.51
PRK11058	426	GTPase HflX; Provisional	99.5
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.49
PRK12296	500	obgE GTPase CgtA; Reviewed	99.49
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.49
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.49
PRK04213	201	GTP-binding protein; Provisional	99.48
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.47
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.47
cd00881	189	GTP_translation_factor GTP translation factor fami	99.47
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.47
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	99.47
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.46
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.46
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.46
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.46
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.46
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.46
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.45
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.45
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.45
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.45
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.44
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.44
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.43
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.43
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.42
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.42
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.42
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.42
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.41
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.41
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.41
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.41
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.41
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.41
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.41
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.41
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.4
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.4
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.4
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.4
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.4
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.4
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.4
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.4
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.39
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.39
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.39
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.39
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.39
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.38
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.38
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.38
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.38
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.38
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.38
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.38
CHL00071	409	tufA elongation factor Tu	99.37
PLN03118	211	Rab family protein; Provisional	99.37
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.37
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.37
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.37
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.37
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.36
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.36
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.36
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.36
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.36
COG2262	411	HflX GTPases [General function prediction only]	99.36
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.36
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.35
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.35
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.35
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.35
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.34
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.34
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.34
PTZ00369	189	Ras-like protein; Provisional	99.34
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.34
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.34
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.34
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.34
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.34
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.34
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.33
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.33
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.33
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.33
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.33
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.33
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.33
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.33
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.33
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.33
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	99.33
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.33
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.32
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.32
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.32
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.32
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.32
PLN03110	216	Rab GTPase; Provisional	99.32
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.31
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.31
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.31
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.31
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.3
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.3
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.3
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.3
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.3
PTZ00133	182	ADP-ribosylation factor; Provisional	99.3
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.3
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.3
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.29
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.29
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.29
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.28
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.28
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.27
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.27
COG0536	369	Obg Predicted GTPase [General function prediction	99.27
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.27
PRK09866	741	hypothetical protein; Provisional	99.27
PLN00223	181	ADP-ribosylation factor; Provisional	99.27
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	99.27
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.27
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.26
PLN03108	210	Rab family protein; Provisional	99.26
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.25
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.25
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.24
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.24
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.24
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.24
PLN03126	478	Elongation factor Tu; Provisional	99.24
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	99.24
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.24
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.23
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.23
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.23
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.22
PLN03127	447	Elongation factor Tu; Provisional	99.22
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.22
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.21
PRK12736	394	elongation factor Tu; Reviewed	99.21
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.21
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.2
PRK12317	425	elongation factor 1-alpha; Reviewed	99.19
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	99.18
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.18
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.18
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.17
PRK05306	787	infB translation initiation factor IF-2; Validated	99.17
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.17
PRK12735	396	elongation factor Tu; Reviewed	99.17
PRK00049	396	elongation factor Tu; Reviewed	99.16
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.16
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.16
COG1163	365	DRG Predicted GTPase [General function prediction	99.15
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.15
KOG0395	196	consensus Ras-related GTPase [General function pre	99.13
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.13
PRK10218	607	GTP-binding protein; Provisional	99.12
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.12
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.12
PLN00023	334	GTP-binding protein; Provisional	99.1
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	99.08
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.08
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.08
PRK12739	691	elongation factor G; Reviewed	99.07
CHL00189	742	infB translation initiation factor 2; Provisional	99.07
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	99.05
COG1100	219	GTPase SAR1 and related small G proteins [General	99.04
PRK00007	693	elongation factor G; Reviewed	99.04
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	99.03
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.03
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	99.02
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.01
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.01
PTZ00258	390	GTP-binding protein; Provisional	99.0
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	99.0
PRK09601	364	GTP-binding protein YchF; Reviewed	99.0
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.0
TIGR00503	527	prfC peptide chain release factor 3. This translat	98.99
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	98.98
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	98.98
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	98.98
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	98.98
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	98.95
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	98.94
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	98.94
PRK13351	687	elongation factor G; Reviewed	98.93
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	98.93
PTZ00141	446	elongation factor 1- alpha; Provisional	98.93
PRK00741	526	prfC peptide chain release factor 3; Provisional	98.92
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	98.91
PRK05433	600	GTP-binding protein LepA; Provisional	98.91
PRK12740	668	elongation factor G; Reviewed	98.91
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.88
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	98.88
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	98.88
KOG0394	210	consensus Ras-related GTPase [General function pre	98.87
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	98.86
PRK04004	586	translation initiation factor IF-2; Validated	98.86
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	98.86
PRK04000	411	translation initiation factor IF-2 subunit gamma;	98.85
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.83
PRK09602	396	translation-associated GTPase; Reviewed	98.82
PF09439	181	SRPRB: Signal recognition particle receptor beta s	98.81
PTZ00416	836	elongation factor 2; Provisional	98.8
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	98.8
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.79
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.78
PRK12289	352	GTPase RsgA; Reviewed	98.77
PLN00043	447	elongation factor 1-alpha; Provisional	98.77
PRK12288	347	GTPase RsgA; Reviewed	98.76
COG1162	301	Predicted GTPases [General function prediction onl	98.75
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.75
COG1217	603	TypA Predicted membrane GTPase involved in stress	98.74
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	98.74
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	98.73
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.71
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	98.7
COG1161	322	Predicted GTPases [General function prediction onl	98.64
KOG2486	320	consensus Predicted GTPase [General function predi	98.63
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	98.63
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	98.63
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	98.62
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.61
PLN00116	843	translation elongation factor EF-2 subunit; Provis	98.6
KOG3883	198	consensus Ras family small GTPase [Signal transduc	98.58
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.58
PRK09435	332	membrane ATPase/protein kinase; Provisional	98.58
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	98.58
PRK07560	731	elongation factor EF-2; Reviewed	98.57
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	98.56
KOG1145	683	consensus Mitochondrial translation initiation fac	98.55
COG0012	372	Predicted GTPase, probable translation factor [Tra	98.54
PRK00098	298	GTPase RsgA; Reviewed	98.53
PRK13768	253	GTPase; Provisional	98.5
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	98.5
PRK13796	365	GTPase YqeH; Provisional	98.48
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.47
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.45
COG2229	187	Predicted GTPase [General function prediction only	98.44
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.44
KOG0462	650	consensus Elongation factor-type GTP-binding prote	98.43
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	98.41
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	98.38
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	98.36
PTZ00099	176	rab6; Provisional	98.35
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	98.35
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	98.33
KOG0410	410	consensus Predicted GTP binding protein [General f	98.29
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	98.25
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	98.24
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	98.22
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	98.22
PRK14845	1049	translation initiation factor IF-2; Provisional	98.17
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.16
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	98.16
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.14
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	98.14
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	98.13
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	98.13
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	98.11
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	98.1
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.08
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	98.07
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	98.03
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	98.02
KOG0090	238	consensus Signal recognition particle receptor, be	98.02
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	98.01
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.99
KOG3886	295	consensus GTP-binding protein [Signal transduction	97.94
TIGR00064	272	ftsY signal recognition particle-docking protein F	97.92
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.9
KOG4252	246	consensus GTP-binding protein [Signal transduction	97.89
PRK10416	318	signal recognition particle-docking protein FtsY;	97.84
PRK14974	336	cell division protein FtsY; Provisional	97.83
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	97.83
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	97.83
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.81
COG0050	394	TufB GTPases - translation elongation factors [Tra	97.8
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	97.79
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.78
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.74
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	97.73
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.71
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	97.69
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	97.66
KOG0461	522	consensus Selenocysteine-specific elongation facto	97.62
KOG2423	572	consensus Nucleolar GTPase [General function predi	97.61
COG3276	447	SelB Selenocysteine-specific translation elongatio	97.61
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.61
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	97.6
KOG2484	435	consensus GTPase [General function prediction only	97.6
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.59
cd03112	158	CobW_like The function of this protein family is u	97.56
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.56
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.56
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.52
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.47
PRK01889	356	GTPase RsgA; Reviewed	97.47
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	97.4
PRK10867	433	signal recognition particle protein; Provisional	97.39
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	97.32
COG3523	1188	IcmF Type VI protein secretion system component Va	97.32
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.29
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.2
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	97.15
TIGR00959	428	ffh signal recognition particle protein. This mode	97.15
cd03111	106	CpaE_like This protein family consists of proteins	97.12
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	97.08
cd03114	148	ArgK-like The function of this protein family is u	97.05
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	97.03
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.01
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	96.94
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	96.9
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	96.87
cd02036	179	MinD Bacterial cell division requires the formatio	96.77
KOG0780	483	consensus Signal recognition particle, subunit Srp	96.74
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	96.6
KOG0467	887	consensus Translation elongation factor 2/ribosome	96.6
KOG0465	721	consensus Mitochondrial elongation factor [Transla	96.55
PRK14737	186	gmk guanylate kinase; Provisional	96.51
KOG0464	753	consensus Elongation factor G [Translation, riboso	96.4
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	96.39
PRK08472	434	fliI flagellum-specific ATP synthase; Validated	96.39
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	96.38
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	96.35
PF00004	132	AAA: ATPase family associated with various cellula	96.35
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	96.33
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	96.32
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	96.29
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	96.24
PF13555	62	AAA_29: P-loop containing region of AAA domain	96.21
KOG0460	449	consensus Mitochondrial translation elongation fac	96.15
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	96.14
PF05879	742	RHD3: Root hair defective 3 GTP-binding protein (R	96.14
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	96.09
PF02263	260	GBP: Guanylate-binding protein, N-terminal domain;	96.06
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	96.01
PRK14738	206	gmk guanylate kinase; Provisional	95.93
KOG0446	657	consensus Vacuolar sorting protein VPS1, dynamin,	95.92
KOG3887	347	consensus Predicted small GTPase involved in nucle	95.82
KOG1533	290	consensus Predicted GTPase [General function predi	95.8
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	95.76
PHA02518	211	ParA-like protein; Provisional	95.73
PRK11537	318	putative GTP-binding protein YjiA; Provisional	95.73
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	95.72
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	95.7
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	95.69
PRK00300	205	gmk guanylate kinase; Provisional	95.68
PF00005	137	ABC_tran: ABC transporter This structure is on hol	95.65
KOG2749	415	consensus mRNA cleavage and polyadenylation factor	95.64
KOG1534	273	consensus Putative transcription factor FET5 [Tran	95.63
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	95.62
KOG1143	591	consensus Predicted translation elongation factor	95.54
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	95.5
KOG1673	205	consensus Ras GTPases [General function prediction	95.47
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	95.45
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	95.36
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	95.34
COG1341	398	Predicted GTPase or GTP-binding protein [General f	95.31
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	95.31
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	95.26
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	95.2
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	95.07
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	95.06
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	95.04
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	95.03
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	95.03
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	95.02
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	95.01
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	95.0
cd02037	169	MRP-like MRP (Multiple Resistance and pH adaptatio	94.99
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	94.97
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	94.92
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	94.91
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	94.9
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	94.86
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	94.85
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	94.84
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	94.81
KOG4181	491	consensus Uncharacterized conserved protein [Funct	94.81
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	94.8
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	94.8
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	94.8
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	94.78
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	94.77
cd03269	210	ABC_putative_ATPase This subfamily is involved in	94.77
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	94.76
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	94.75
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	94.75
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	94.75
cd03110	179	Fer4_NifH_child This protein family's function is	94.74
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	94.71
COG2884	223	FtsE Predicted ATPase involved in cell division [C	94.7
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	94.7
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	94.69
cd03216	163	ABC_Carb_Monos_I This family represents the domain	94.69
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	94.68
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	94.68
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	94.67
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	94.66
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	94.66
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	94.64
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	94.6
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	94.57
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	94.57
PRK13849	231	putative crown gall tumor protein VirC1; Provision	94.55
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	94.55
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	94.55
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	94.52
cd03215	182	ABC_Carb_Monos_II This family represents domain II	94.49
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	94.49
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	94.48
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	94.48
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	94.48
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	94.46
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	94.46
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	94.46
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	94.46
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	94.45
PRK13851	344	type IV secretion system protein VirB11; Provision	94.43
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	94.42
COG4988	559	CydD ABC-type transport system involved in cytochr	94.42
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	94.41
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	94.41
PLN02772	398	guanylate kinase	94.41
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	94.41
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	94.4
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	94.39
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	94.39
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	94.38
COG0523	323	Putative GTPases (G3E family) [General function pr	94.36
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	94.36
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	94.35
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	94.35
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	94.35
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	94.35
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	94.35
PRK10908	222	cell division protein FtsE; Provisional	94.35
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	94.34
PRK07952	244	DNA replication protein DnaC; Validated	94.32
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	94.32
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	94.31
COG0410	237	LivF ABC-type branched-chain amino acid transport	94.3
KOG0466	466	consensus Translation initiation factor 2, gamma s	94.3
COG2607	287	Predicted ATPase (AAA+ superfamily) [General funct	94.3
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	94.3

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=100.00  E-value=1.5e-62  Score=428.87  Aligned_cols=264  Identities=66%  Similarity=1.091  Sum_probs=246.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|++|+||||++|+|+|++++.++.+.++|..+.......+|.++.||||||+.+....+++..+.++.++...++|++|
T Consensus        44 vGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVL  123 (313)
T TIGR00991        44 MGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLL  123 (313)
T ss_pred             ECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEE
Confidence            69999999999999999998888888777776666677789999999999999987766677777788777777999999


Q ss_pred             EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHHHHHhhchHHHHHHHhccccccccccccCC
Q 024586           81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSF  160 (265)
Q Consensus        81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~  160 (265)
                      ||+++|..+++..|.++++.+++.||+++|+++|||+||+|..++++.++++|+.++++.++++|+++.+..+.+.+...
T Consensus       124 yV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~~e~fv~~~~~~lq~~i~~~~~~~~~~~~~~~  203 (313)
T TIGR00991       124 YVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLEYNDFFSKRSEALLRVIHSGAGLKKRDYQDFP  203 (313)
T ss_pred             EEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCCHHHHHHhcHHHHHHHHHHHhccccccccccc
Confidence            99999988899999999999999999999999999999999988899999999999999999999999988887788888


Q ss_pred             chhHhhhcCCcCCCCccccccCCCCCCChHHHHHHHHHHhhCCCcceecccccccCCCCCCCCccchhHHHHHHHHHHHh
Q 024586          161 VPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGSKALLVDKKLVEGPNPNEKGKILIPFIFAFQYFFIIK  240 (265)
Q Consensus       161 ip~~~~~n~~~~~~~~~~~~~lp~~~~W~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  240 (265)
                      +|++++||+++|.+|+.+|++||+++.|++.|+++|.+++.+.++++++|++++++++||.++|+|+||++++||||++|
T Consensus       204 ~pv~lven~~~c~~n~~ge~vlp~g~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (313)
T TIGR00991       204 IPVALVENSGRCKKNESDEKILPDGTPWIPKLMKEITEVISNGSKPIHVDKKLIDGPNPNNRGKMFIPLIFAVQYLLVVK  283 (313)
T ss_pred             CCEEEEecCCcccCCCCCCeECCCCCccHHHHHHHHHHHHhCCCCCeEecHHHccCCCCCcccccHHHHHHHHHHHhhhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHHHHHHhHhhcccchhhhhhcc
Q 024586          241 PLIRAIKSDAAKEAKPVWARASRR  264 (265)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~  264 (265)
                      ||+++|++||++|++|+||.|+.-
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~  307 (313)
T TIGR00991       284 PIRRAIHADIANEKKDAWEQRDRG  307 (313)
T ss_pred             HHHHHHHHHHhhccCcchhhhhhh
Confidence            999999999999999999999753

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=100.00  E-value=7.1e-46  Score=346.59  Aligned_cols=245  Identities=32%  Similarity=0.511  Sum_probs=216.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCC---cHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV---NYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~---~~~~~~~i~~~l~~~~~d   77 (265)
                      +|+||+||||++|+|+|+.++.++...+.|+.+.......+|..+.||||||+.++...   ++++++.+.+++...++|
T Consensus       124 VGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpD  203 (763)
T TIGR00993       124 LGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPD  203 (763)
T ss_pred             ECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCC
Confidence            69999999999999999998777776666666666666788999999999999987432   345666777777767899


Q ss_pred             EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCC-----CCHHHHHhhchHHHHHHHhcccccc
Q 024586           78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR-----LDYEVFCSKRSEALLKFVSPSTWMK  152 (265)
Q Consensus        78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~-----~~~~~~~~~~~~~l~~~i~~~~~~~  152 (265)
                      +||||++++..+.+.++..+++.|++.||+++|+++||||||+|..++++     .++++|+.++.+.++++|++|++..
T Consensus       204 VVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppdg~ng~~~tye~fv~~rs~~Lq~~Irq~~g~~  283 (763)
T TIGR00993       204 IVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPPDGPNGTPLSYDVFVAQRSHIVQQAIGQAVGDL  283 (763)
T ss_pred             EEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCCCCCCCCCcCHHHHHhhChHHHHHHHHHhcCcc
Confidence            99999999865666678899999999999999999999999999987765     6899999999999999999998755


Q ss_pred             ccccccCCchhHhhhcCCcCCCCccccccCCCCCCChHHHHHHHH-HHhhCCCcceecccccccCCCCCCCCccchhHHH
Q 024586          153 KKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTIT-EVVLNGSKALLVDKKLVEGPNPNEKGKILIPFIF  231 (265)
Q Consensus       153 ~~~~~~~~ip~~~~~n~~~~~~~~~~~~~lp~~~~W~~~L~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  231 (265)
                      ....+..++|++++||+++|.+|+.+|++||+++.|++.|+..|. ..+.+++.+++.+++++++++++.++++|+||++
T Consensus       284 ~l~n~~~~~Pv~lvEN~~~C~~N~~gekVLPnG~~W~p~llllc~~~k~l~~a~~l~~~q~~~~~~~~~~~~~~~~plp~  363 (763)
T TIGR00993       284 RLMNPNLMNPVSLVENHPACRKNRAGQKVLPNGQVWKPHLLLLCYSSKILSEANALLKLQENIDGRRPFGFRSRAPPLPY  363 (763)
T ss_pred             eecccCCCCCEEEEecCCcccCCCCCceeCCCCchhHHHHHHHHHHhhhhccccccccccccccCCCcccccccCCchHH
Confidence            544456689999999999999999999999999999999999998 8899999999999999999999999999999999


Q ss_pred             HHHHHHHHhHhHHH
Q 024586          232 AFQYFFIIKPLIRA  245 (265)
Q Consensus       232 ~~~~~~~~~~~~~~  245 (265)
                      ++||||++||--+.
T Consensus       364 ~ls~ll~~r~~~k~  377 (763)
T TIGR00993       364 LLSWLLQSRAHPKL  377 (763)
T ss_pred             HHHHHhhcCCCCCC
Confidence            99999999985444

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=100.00  E-value=1.4e-37  Score=268.01  Aligned_cols=208  Identities=49%  Similarity=0.683  Sum_probs=173.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCC---CCcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGG---YVNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~---~~~~~~~~~i~~~l~~~~~d   77 (265)
                      +|++|+|||||+|+|+|...+.++.+.++|..+..+...++|.++++|||||+.+..   ..++.+++.+.+++...++|
T Consensus        37 vG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~id  116 (249)
T cd01853          37 LGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPD  116 (249)
T ss_pred             ECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCC
Confidence            699999999999999999988888888888888888888899999999999998873   23456777788888777899


Q ss_pred             EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHHHHHhhchHHHHHHHhc-ccccccccc
Q 024586           78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSP-STWMKKKDI  156 (265)
Q Consensus        78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~-~~~~~~~~~  156 (265)
                      ++|||.++|..+++..|..+++.|.+.||+++|+++++|+||+|..++++.....+..++...+++.+.+ +..+.. ..
T Consensus       117 vIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~  195 (249)
T cd01853         117 VVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDGLNGTPFSYDRFVAQRSHIVQQAIQQAA-GD  195 (249)
T ss_pred             EEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCCCCCCcchHHHHHHHHHHHHHHHhhhhc-cC
Confidence            9999999998889999999999999999999999999999999999888876655554444444444433 333332 22


Q ss_pred             ccCCchhHhhhcCCcCCCCccccccCCCCCCChHHHHHHHHHHhhCCCcceec
Q 024586          157 QGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGSKALLV  209 (265)
Q Consensus       157 ~~~~ip~~~~~n~~~~~~~~~~~~~lp~~~~W~~~L~~~i~~~~~~~~~~~~~  209 (265)
                      ....+|+++++|++.|.+|+.||++||+++.|++.|+..|.........++++
T Consensus       196 ~~~~~pv~lven~~~c~~n~~~~~vlp~g~~w~~~~~~~~~~~~~~~~~~~~~  248 (249)
T cd01853         196 PRLENPVSLVENHPRCRKNREGEKVLPNGTVWKPQLLLLCYSVKLLSEANILL  248 (249)
T ss_pred             ccccCCEEEEeCCCcccCCCCCCeECCCCCccHHHHHHHHHHHHhcccccccc
Confidence            24569999999999999999999999999999999999999998877666554

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.97  E-value=5e-30  Score=216.68  Aligned_cols=176  Identities=30%  Similarity=0.398  Sum_probs=137.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccC-CCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH--hcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVST-FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL--LNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~-~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l--~~~~~d   77 (265)
                      +|++|+||||++|+|+|.+.+..+. ..++|..+..+...++|+.++||||||+.++...+++..+.|.+++  +.+++|
T Consensus         6 lG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~h   85 (212)
T PF04548_consen    6 LGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPH   85 (212)
T ss_dssp             ECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ES
T ss_pred             ECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCe
Confidence            6999999999999999999876653 4567888999999999999999999999998887888888888876  568999


Q ss_pred             EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHHHHHhhc-hHHHHHHHhccc-cc---c
Q 024586           78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKR-SEALLKFVSPST-WM---K  152 (265)
Q Consensus        78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~-~~~l~~~i~~~~-~~---~  152 (265)
                      +||||++++  +++..+...++.+.+.||+++|+++|||+|++|...  +..+++|++.. +..+++++++|+ ++   +
T Consensus        86 a~llVi~~~--r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~--~~~~~~~l~~~~~~~l~~li~~c~~R~~~f~  161 (212)
T PF04548_consen   86 AFLLVIPLG--RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELE--DDSLEDYLKKESNEALQELIEKCGGRYHVFN  161 (212)
T ss_dssp             EEEEEEETT--B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGT--TTTHHHHHHHHHHHHHHHHHHHTTTCEEECC
T ss_pred             EEEEEEecC--cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccc--cccHHHHHhccCchhHhHHhhhcCCEEEEEe
Confidence            999998887  899999999999999999999999999999998753  33499999854 467999999876 33   2


Q ss_pred             cc-------ccc----cCCchhHhhhcCCcCCCCccccc
Q 024586          153 KK-------DIQ----GSFVPVVLVENSGRCAKNENDEK  180 (265)
Q Consensus       153 ~~-------~~~----~~~ip~~~~~n~~~~~~~~~~~~  180 (265)
                      ..       ..|    +.+|+.++.+|+|.||+++++++
T Consensus       162 n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g~~~~~~~~~~  200 (212)
T PF04548_consen  162 NKTKDKEKDESQVSELLEKIEEMVQENGGQYYSNEMFEE  200 (212)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHTTTT--B-HHHHH
T ss_pred             ccccchhhhHHHHHHHHHHHHHHHHHcCCCCCChHHHHH
Confidence            22       112    46899999999999999887654

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.95  E-value=1.1e-26  Score=193.99  Aligned_cols=145  Identities=24%  Similarity=0.327  Sum_probs=122.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccC-CCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH--hcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVST-FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL--LNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~-~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l--~~~~~d   77 (265)
                      +|++|+|||||+|+|+|.+.+..+. ..+.|..+..+...++|..+.||||||+.+.....+...+.+.+++  +.+++|
T Consensus         6 vG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~   85 (196)
T cd01852           6 VGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPH   85 (196)
T ss_pred             ECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCE
Confidence            6999999999999999998765553 3467888888888899999999999999987655555556666654  347899


Q ss_pred             EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHHHHHhhchHHHHHHHhccc
Q 024586           78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPST  149 (265)
Q Consensus        78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~  149 (265)
                      ++|||++++  +++..|..+++.+++.||+++|+++++|+||+|..  .+.++++|+......++++++.|+
T Consensus        86 ~illVi~~~--~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l--~~~~~~~~~~~~~~~l~~l~~~c~  153 (196)
T cd01852          86 AFLLVVPLG--RFTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDL--EGGTLEDYLENSCEALKRLLEKCG  153 (196)
T ss_pred             EEEEEEECC--CcCHHHHHHHHHHHHHhChHhHhcEEEEEECcccc--CCCcHHHHHHhccHHHHHHHHHhC
Confidence            999998776  48999999999999999999999999999999875  334899999888889999999886

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.84  E-value=1.7e-20  Score=159.70  Aligned_cols=182  Identities=25%  Similarity=0.358  Sum_probs=125.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|+||+|||||||+|++.+..+++....++.........+++..+++|||||++|+...+.++...+...+  ++.|++|
T Consensus        45 ~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l--~~~DLvL  122 (296)
T COG3596          45 MGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYL--PKLDLVL  122 (296)
T ss_pred             ecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHHh--hhccEEE
Confidence            59999999999999998777777766656555555566678889999999999998888877777777766  4789999


Q ss_pred             EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHHHHHhhchHHHHHHHhccc----ccccccc
Q 024586           81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPST----WMKKKDI  156 (265)
Q Consensus        81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~----~~~~~~~  156 (265)
                      ++.+.++ |.-..|..++..+.-....   +++++|+|++|...+- .+|+.--...+.+++++++...    ++...  
T Consensus       123 ~l~~~~d-raL~~d~~f~~dVi~~~~~---~~~i~~VtQ~D~a~p~-~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~--  195 (296)
T COG3596         123 WLIKADD-RALGTDEDFLRDVIILGLD---KRVLFVVTQADRAEPG-REWDSAGHQPSPAIKQFIEEKAEALGRLFQE--  195 (296)
T ss_pred             EeccCCC-ccccCCHHHHHHHHHhccC---ceeEEEEehhhhhccc-cccccccCCCCHHHHHHHHHHHHHHHHHHhh--
Confidence            9988776 4334455666665544433   8999999999986442 2233222233445555553211    11000  


Q ss_pred             ccCCchhHhhhcCCcCCCCccccccCCCCCCC-hHHHHHHHHHHhhCCCcceecc
Q 024586          157 QGSFVPVVLVENSGRCAKNENDEKVLPNGTAW-IPNLVKTITEVVLNGSKALLVD  210 (265)
Q Consensus       157 ~~~~ip~~~~~n~~~~~~~~~~~~~lp~~~~W-~~~L~~~i~~~~~~~~~~~~~~  210 (265)
                         --|++.++                ...+| +..|+..+++++|.+++...+.
T Consensus       196 ---V~pV~~~~----------------~r~~wgl~~l~~ali~~lp~e~rs~~a~  231 (296)
T COG3596         196 ---VKPVVAVS----------------GRLPWGLKELVRALITALPVEARSPLAA  231 (296)
T ss_pred             ---cCCeEEec----------------cccCccHHHHHHHHHHhCcccccchhhh
Confidence               12443222                22457 9999999999999999877665

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.83  E-value=4.6e-23  Score=185.11  Aligned_cols=229  Identities=19%  Similarity=0.153  Sum_probs=141.0

Q ss_pred             CCCCCCCHHHHHHHHhCCC-----cccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK-----AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT   75 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~-----~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~   75 (265)
                      +|.+|+|||||||+|.|-.     .+.++.. .+|..+..|.. ..-.++++||.||++.+....+++++.+.-    ..
T Consensus        41 ~G~sGsGKSSfINalrGl~~~d~~aA~tGv~-etT~~~~~Y~~-p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~----~~  114 (376)
T PF05049_consen   41 TGESGSGKSSFINALRGLGHEDEGAAPTGVV-ETTMEPTPYPH-PKFPNVTLWDLPGIGTPNFPPEEYLKEVKF----YR  114 (376)
T ss_dssp             EESTTSSHHHHHHHHTT--TTSTTS--SSSH-SCCTS-EEEE--SS-TTEEEEEE--GGGSS--HHHHHHHTTG----GG
T ss_pred             ECCCCCCHHHHHHHHhCCCCCCcCcCCCCCC-cCCCCCeeCCC-CCCCCCeEEeCCCCCCCCCCHHHHHHHccc----cc
Confidence            4999999999999998732     2333332 35555555443 333468999999999888777788876653    37


Q ss_pred             ccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccC--CCCCCCCHHHHHhhchHHHHHHHhccccccc
Q 024586           76 IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL--SLPDRLDYEVFCSKRSEALLKFVSPSTWMKK  153 (265)
Q Consensus        76 ~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~--~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~  153 (265)
                      +|+||++   .+.||+..|..+++.++++.     +++++|.||+|.  ...+......|.+   +.+.+-|++.+.-+-
T Consensus       115 yD~fiii---~s~rf~~ndv~La~~i~~~g-----K~fyfVRTKvD~Dl~~~~~~~p~~f~~---e~~L~~IR~~c~~~L  183 (376)
T PF05049_consen  115 YDFFIII---SSERFTENDVQLAKEIQRMG-----KKFYFVRTKVDSDLYNERRRKPRTFNE---EKLLQEIRENCLENL  183 (376)
T ss_dssp             -SEEEEE---ESSS--HHHHHHHHHHHHTT------EEEEEE--HHHHHHHHHCC-STT--H---HTHHHHHHHHHHHHH
T ss_pred             cCEEEEE---eCCCCchhhHHHHHHHHHcC-----CcEEEEEecccccHhhhhccCCcccCH---HHHHHHHHHHHHHHH
Confidence            8999888   44589999999999999986     999999999975  2111111111221   233333333221111


Q ss_pred             cccccCCchhHhhhcCCcCCCCccccccCCCCCCChHHHHHHHHHHhhCCCcceecc------cccccCCCCCCCCccch
Q 024586          154 KDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGSKALLVD------KKLVEGPNPNEKGKILI  227 (265)
Q Consensus       154 ~~~~~~~ip~~~~~n~~~~~~~~~~~~~lp~~~~W~~~L~~~i~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~  227 (265)
                      +...+...+++++++.           .+..+|  ++.|.+++...++.++|+.++.      ++.++.++.+.++++|+
T Consensus       184 ~k~gv~~P~VFLVS~~-----------dl~~yD--Fp~L~~tL~~dLp~~Kr~~fllsLp~is~~~I~kKk~~lk~~Iw~  250 (376)
T PF05049_consen  184 QKAGVSEPQVFLVSSF-----------DLSKYD--FPKLEETLEKDLPAHKRHAFLLSLPNISEAAIEKKKESLKQKIWL  250 (376)
T ss_dssp             HCTT-SS--EEEB-TT-----------TTTSTT--HHHHHHHHHHHS-GGGHHHHHHHS---SHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCCcCceEEEeCC-----------CcccCC--hHHHHHHHHHHhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHH
Confidence            1122345788888874           244556  9999999999999999988776      56788888889999997


Q ss_pred             h-HHHHHHHHHHHhHhHHHH-HHhHhhcccchhhhhh
Q 024586          228 P-FIFAFQYFFIIKPLIRAI-KSDAAKEAKPVWARAS  262 (265)
Q Consensus       228 p-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  262 (265)
                      - +.-++-.++   |+.+.+ ..|+....+.+..||.
T Consensus       251 ~Al~s~~~a~i---P~~g~~~~~D~~~L~~~l~~Yr~  284 (376)
T PF05049_consen  251 EALKSAAVATI---PVPGLSSACDLEILEKCLNQYRS  284 (376)
T ss_dssp             HHHHT--BSS----CCCSS--HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccC---CCcccccccCHHHHHHHHHHHHH
Confidence            4 444444455   888885 7799999999988885

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>COG1159 Era GTPase [General function prediction only]

Probab=99.78  E-value=6.6e-18  Score=145.64  Aligned_cols=118  Identities=21%  Similarity=0.270  Sum_probs=95.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCc-HHHHHHHHHHHhcCCccEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN-YHAIQLIKRFLLNKTIDVL   79 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~-~~~~~~i~~~l~~~~~d~i   79 (265)
                      ||+++||||||+|+|+|++++.+|+.+.||+....+-.+.+..++.++||||+..+...- +.+.+.+...+  .++|++
T Consensus        12 iGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl--~dvDli   89 (298)
T COG1159          12 IGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSAL--KDVDLI   89 (298)
T ss_pred             EcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh--ccCcEE
Confidence            699999999999999999999999999999999998888889999999999998774332 22222222222  589999


Q ss_pred             EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCC
Q 024586           80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD  126 (265)
Q Consensus        80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~  126 (265)
                      |||++.+. .+...|..+++.+.+..     .|+++++||.|...++
T Consensus        90 lfvvd~~~-~~~~~d~~il~~lk~~~-----~pvil~iNKID~~~~~  130 (298)
T COG1159          90 LFVVDADE-GWGPGDEFILEQLKKTK-----TPVILVVNKIDKVKPK  130 (298)
T ss_pred             EEEEeccc-cCCccHHHHHHHHhhcC-----CCeEEEEEccccCCcH
Confidence            99966653 38889999999998832     7999999999986443

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.77  E-value=2.1e-18  Score=138.09  Aligned_cols=118  Identities=18%  Similarity=0.248  Sum_probs=88.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+++|||||+|+|+|.. ..+++++++|.+...+...+++..+.++||||+++......+ .+...+++....+|+++
T Consensus         6 vG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~e-e~v~~~~l~~~~~D~ii   83 (156)
T PF02421_consen    6 VGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEE-ERVARDYLLSEKPDLII   83 (156)
T ss_dssp             EESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHH-HHHHHHHHHHTSSSEEE
T ss_pred             ECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcH-HHHHHHHHhhcCCCEEE
Confidence            5999999999999999999 478999999999998899999999999999999875443321 13335566667899999


Q ss_pred             EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCC
Q 024586           81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRL  128 (265)
Q Consensus        81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~  128 (265)
                      +|  +|+.++ +.+..++..+.+..     +|+++|+||+|.....+.
T Consensus        84 ~V--vDa~~l-~r~l~l~~ql~e~g-----~P~vvvlN~~D~a~~~g~  123 (156)
T PF02421_consen   84 VV--VDATNL-ERNLYLTLQLLELG-----IPVVVVLNKMDEAERKGI  123 (156)
T ss_dssp             EE--EEGGGH-HHHHHHHHHHHHTT-----SSEEEEEETHHHHHHTTE
T ss_pred             EE--CCCCCH-HHHHHHHHHHHHcC-----CCEEEEEeCHHHHHHcCC
Confidence            99  555454 34456666776654     999999999998655543

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.75  E-value=1.7e-17  Score=126.69  Aligned_cols=111  Identities=29%  Similarity=0.448  Sum_probs=83.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH-hcCCccEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL-LNKTIDVL   79 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l-~~~~~d~i   79 (265)
                      +|.+|+|||||+|+|++.+.+.++..+++|..+......+++..+.++||||+.++....... +.+..++ ....+|++
T Consensus         5 iG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~-~~~~~~~~~~~~~d~i   83 (116)
T PF01926_consen    5 IGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDG-KEIRKFLEQISKSDLI   83 (116)
T ss_dssp             EESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHH-HHHHHHHHHHCTESEE
T ss_pred             ECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHH-HHHHHHHHHHHHCCEE
Confidence            599999999999999998777888888899888766778899999999999998765433211 1222222 12588999


Q ss_pred             EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeC
Q 024586           80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTH  119 (265)
Q Consensus        80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk  119 (265)
                      +||++.+. ..++.+.++++.+. .     .+|+++|+||
T Consensus        84 i~vv~~~~-~~~~~~~~~~~~l~-~-----~~~~i~v~NK  116 (116)
T PF01926_consen   84 IYVVDASN-PITEDDKNILRELK-N-----KKPIILVLNK  116 (116)
T ss_dssp             EEEEETTS-HSHHHHHHHHHHHH-T-----TSEEEEEEES
T ss_pred             EEEEECCC-CCCHHHHHHHHHHh-c-----CCCEEEEEcC
Confidence            99987554 34566777878784 1     2899999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.74  E-value=2.7e-17  Score=137.40  Aligned_cols=175  Identities=18%  Similarity=0.186  Sum_probs=105.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCC----CCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTF----QSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI   76 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~----~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~   76 (265)
                      +|.+|+|||||+|+|+|......+..    ..+|.....+.. .....+.+|||||+.+.....+++++.+    ...++
T Consensus         7 ~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~l~~~----~~~~~   81 (197)
T cd04104           7 TGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH-PKFPNVTLWDLPGIGSTAFPPDDYLEEM----KFSEY   81 (197)
T ss_pred             ECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec-CCCCCceEEeCCCCCcccCCHHHHHHHh----CccCc
Confidence            69999999999999999643211111    112222211111 1234789999999987655444444332    22478


Q ss_pred             cEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCC-------CHHHHHhhchHHHHHHHhccc
Q 024586           77 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRL-------DYEVFCSKRSEALLKFVSPST  149 (265)
Q Consensus        77 d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~-------~~~~~~~~~~~~l~~~i~~~~  149 (265)
                      |++++|  .+ .+++..+..+++.+.+..     +++++|+||+|+..+...       ..+++++...+.+.+.+... 
T Consensus        82 d~~l~v--~~-~~~~~~d~~~~~~l~~~~-----~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~-  152 (197)
T cd04104          82 DFFIII--SS-TRFSSNDVKLAKAIQCMG-----KKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEA-  152 (197)
T ss_pred             CEEEEE--eC-CCCCHHHHHHHHHHHHhC-----CCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHc-
Confidence            999998  33 368999999999998863     789999999998533221       12222222222222222211 


Q ss_pred             cccccccccCCchhHhhhcCCcCCCCccccccCCCCCCChHHHHHHHHHHhhCCCcceec
Q 024586          150 WMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGSKALLV  209 (265)
Q Consensus       150 ~~~~~~~~~~~ip~~~~~n~~~~~~~~~~~~~lp~~~~W~~~L~~~i~~~~~~~~~~~~~  209 (265)
                             .....+++++++..           ...++  ++.|.+.|+..++.++|+.+.
T Consensus       153 -------~~~~p~v~~vS~~~-----------~~~~~--~~~l~~~~~~~l~~~~~~~~~  192 (197)
T cd04104         153 -------GVSEPPVFLVSNFD-----------PSDYD--FPKLRETLLKDLPAHKRHVFL  192 (197)
T ss_pred             -------CCCCCCEEEEeCCC-----------hhhcC--hHHHHHHHHHHhhHHHHHHHH
Confidence                   11234666666531           00122  999999999999998887653

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.73  E-value=2.4e-17  Score=149.45  Aligned_cols=115  Identities=22%  Similarity=0.301  Sum_probs=92.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH--HhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRF--LLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~--l~~~~~d~   78 (265)
                      ||+++||||||+|+|+|++.+.+++++++|++......++.++.+.+|||+|+.+...  +...+.++..  ....++|+
T Consensus         9 VGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~--~~l~~~i~~Qa~~Ai~eADv   86 (444)
T COG1160           9 VGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDE--DELQELIREQALIAIEEADV   86 (444)
T ss_pred             ECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCc--hHHHHHHHHHHHHHHHhCCE
Confidence            6999999999999999999999999999999999999999999999999999975431  1222222221  12258999


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|||++... .+++.|..+.+.|.+.-     +|+++|.||+|..
T Consensus        87 ilfvVD~~~-Git~~D~~ia~~Lr~~~-----kpviLvvNK~D~~  125 (444)
T COG1160          87 ILFVVDGRE-GITPADEEIAKILRRSK-----KPVILVVNKIDNL  125 (444)
T ss_pred             EEEEEeCCC-CCCHHHHHHHHHHHhcC-----CCEEEEEEcccCc
Confidence            999954332 38999999999998543     9999999999974

>TIGR00436 era GTP-binding protein Era

Probab=99.69  E-value=5.8e-16  Score=135.50  Aligned_cols=114  Identities=17%  Similarity=0.231  Sum_probs=81.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCC-cHHHHHHHHHHHhcCCccEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV-NYHAIQLIKRFLLNKTIDVL   79 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~-~~~~~~~i~~~l~~~~~d~i   79 (265)
                      +|.+|||||||+|+|+|.+.+.+++.+++|..........++.++.++||||+.+.... .+...+....++  ..+|++
T Consensus         6 iG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l--~~aDvv   83 (270)
T TIGR00436         6 LGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAI--GGVDLI   83 (270)
T ss_pred             ECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHH--hhCCEE
Confidence            69999999999999999998788888888887666555566778999999999765321 111222222222  488999


Q ss_pred             EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ++|++.+.  ....+..+++.+...     ..|+++|+||+|+.
T Consensus        84 l~VvD~~~--~~~~~~~i~~~l~~~-----~~p~ilV~NK~Dl~  120 (270)
T TIGR00436        84 LFVVDSDQ--WNGDGEFVLTKLQNL-----KRPVVLTRNKLDNK  120 (270)
T ss_pred             EEEEECCC--CCchHHHHHHHHHhc-----CCCEEEEEECeeCC
Confidence            99976653  222334555655543     27999999999985

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd01894 EngA1 EngA1 subfamily

Probab=99.68  E-value=4.4e-16  Score=123.82  Aligned_cols=115  Identities=17%  Similarity=0.254  Sum_probs=82.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCC-CcHHHHHHHHHHHhcCCccEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY-VNYHAIQLIKRFLLNKTIDVL   79 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~-~~~~~~~~i~~~l~~~~~d~i   79 (265)
                      +|.+|+|||||+|+|++......+..+++|...........+..+.+|||||+.+... ...........++  ..+|++
T Consensus         3 ~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~--~~~d~i   80 (157)
T cd01894           3 VGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAI--EEADVI   80 (157)
T ss_pred             cCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHH--HhCCEE
Confidence            6999999999999999987656666667777777777778889999999999976432 1111222222222  478999


Q ss_pred             EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ++|++... ..+..+..+.+.+.+..     .|+++|+||+|+.
T Consensus        81 i~v~d~~~-~~~~~~~~~~~~~~~~~-----~piiiv~nK~D~~  118 (157)
T cd01894          81 LFVVDGRE-GLTPADEEIAKYLRKSK-----KPVILVVNKVDNI  118 (157)
T ss_pred             EEEEeccc-cCCccHHHHHHHHHhcC-----CCEEEEEECcccC
Confidence            99976543 34455556666665542     8999999999985

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.68  E-value=1.2e-16  Score=144.84  Aligned_cols=126  Identities=26%  Similarity=0.372  Sum_probs=99.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcH--HHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY--HAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~--~~~~~i~~~l~~~~~d~   78 (265)
                      ||++++|||||+|+|+|++...+++.+++|.++.....+++|+++.+|||.|+-.-....+  +.++.++..-....+|+
T Consensus       184 iGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~v  263 (444)
T COG1160         184 IGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADV  263 (444)
T ss_pred             EeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCE
Confidence            6999999999999999999999999999999999999999999999999999976443332  22222222222247899


Q ss_pred             EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHHHH
Q 024586           79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVF  133 (265)
Q Consensus        79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~~~  133 (265)
                      +++|+  |+.. ++++|..++..+.+..     +.+++|+||+|+...+....+++
T Consensus       264 vllvi--Da~~~~~~qD~~ia~~i~~~g-----~~~vIvvNKWDl~~~~~~~~~~~  312 (444)
T COG1160         264 VLLVI--DATEGISEQDLRIAGLIEEAG-----RGIVIVVNKWDLVEEDEATMEEF  312 (444)
T ss_pred             EEEEE--ECCCCchHHHHHHHHHHHHcC-----CCeEEEEEccccCCchhhHHHHH
Confidence            99994  5444 8999999999998876     89999999999975444444444

>PRK00089 era GTPase Era; Reviewed

Probab=99.67  E-value=2.8e-15  Score=132.56  Aligned_cols=115  Identities=22%  Similarity=0.271  Sum_probs=82.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHH-HHHHHHHHHhcCCccEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH-AIQLIKRFLLNKTIDVL   79 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~-~~~~i~~~l~~~~~d~i   79 (265)
                      +|.+|||||||+|+|+|.+.+.+++.+.+|..........++.++.++||||+.+......+ ........  ...+|++
T Consensus        11 iG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~--~~~~D~i   88 (292)
T PRK00089         11 VGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSS--LKDVDLV   88 (292)
T ss_pred             ECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHH--HhcCCEE
Confidence            69999999999999999998777877777666554444446679999999999765422111 11122222  2478999


Q ss_pred             EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ++|++.+. .++..+..+++.+...     ..|+++|+||+|+.
T Consensus        89 l~vvd~~~-~~~~~~~~i~~~l~~~-----~~pvilVlNKiDl~  126 (292)
T PRK00089         89 LFVVDADE-KIGPGDEFILEKLKKV-----KTPVILVLNKIDLV  126 (292)
T ss_pred             EEEEeCCC-CCChhHHHHHHHHhhc-----CCCEEEEEECCcCC
Confidence            99977664 4667777777766632     27999999999985

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.66  E-value=5e-16  Score=141.28  Aligned_cols=116  Identities=24%  Similarity=0.318  Sum_probs=89.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH-hcCCccEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL-LNKTIDVL   79 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l-~~~~~d~i   79 (265)
                      +|+++||||||+|+|++++.+.|++.++||++.......++|.++.++||.|+.++...-+..  -|.+.. ....+|.+
T Consensus       223 iG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~i--GIeRs~~~i~~ADlv  300 (454)
T COG0486         223 IGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERI--GIERAKKAIEEADLV  300 (454)
T ss_pred             ECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHH--HHHHHHHHHHhCCEE
Confidence            699999999999999999999999999999999999999999999999999998765432211  112221 22488999


Q ss_pred             EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCC
Q 024586           80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP  125 (265)
Q Consensus        80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~  125 (265)
                      |||++.+. ..+..|...+..+..      .+++++|.||+|+...
T Consensus       301 L~v~D~~~-~~~~~d~~~~~~~~~------~~~~i~v~NK~DL~~~  339 (454)
T COG0486         301 LFVLDASQ-PLDKEDLALIELLPK------KKPIIVVLNKADLVSK  339 (454)
T ss_pred             EEEEeCCC-CCchhhHHHHHhccc------CCCEEEEEechhcccc
Confidence            99954442 156777777762211      2899999999999643

>PRK15494 era GTPase Era; Provisional

Probab=99.65  E-value=7.5e-15  Score=132.40  Aligned_cols=115  Identities=18%  Similarity=0.204  Sum_probs=82.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCC-cHHHHHHHHHHHhcCCccEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV-NYHAIQLIKRFLLNKTIDVL   79 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~-~~~~~~~i~~~l~~~~~d~i   79 (265)
                      +|.+|||||||+|+|+|.....+++...+|..........++.++.+|||||+.+.... .....+.....  ..++|++
T Consensus        58 vG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~--l~~aDvi  135 (339)
T PRK15494         58 IGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSS--LHSADLV  135 (339)
T ss_pred             EcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHH--hhhCCEE
Confidence            69999999999999999987667776677776666677788899999999999653221 22222222112  2488999


Q ss_pred             EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      |+|++... .++..+..+++.+....     .+.++|+||+|+.
T Consensus       136 l~VvD~~~-s~~~~~~~il~~l~~~~-----~p~IlViNKiDl~  173 (339)
T PRK15494        136 LLIIDSLK-SFDDITHNILDKLRSLN-----IVPIFLLNKIDIE  173 (339)
T ss_pred             EEEEECCC-CCCHHHHHHHHHHHhcC-----CCEEEEEEhhcCc
Confidence            99965432 36777777777766532     5778999999984

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.64  E-value=4.8e-15  Score=118.16  Aligned_cols=114  Identities=18%  Similarity=0.213  Sum_probs=79.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+|+|||||+|++.|.. +.++..+++|........++++..+.+|||||+.+......+ ......++...++|+++
T Consensus         2 ~G~~~~GKssl~~~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~-~~~~~~~~~~~~~d~vi   79 (158)
T cd01879           2 VGNPNVGKTTLFNALTGAR-QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSED-EKVARDFLLGEKPDLIV   79 (158)
T ss_pred             CCCCCCCHHHHHHHHhcCc-ccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChh-HHHHHHHhcCCCCcEEE
Confidence            6999999999999999986 356666777777777777788899999999999765432211 11123333336899999


Q ss_pred             EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      +|++...  . .....++..+.+.     .+|+++|+||+|+.+
T Consensus        80 ~v~d~~~--~-~~~~~~~~~~~~~-----~~~~iiv~NK~Dl~~  115 (158)
T cd01879          80 NVVDATN--L-ERNLYLTLQLLEL-----GLPVVVALNMIDEAE  115 (158)
T ss_pred             EEeeCCc--c-hhHHHHHHHHHHc-----CCCEEEEEehhhhcc
Confidence            9966553  2 2233444444432     289999999999853

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.64  E-value=7.4e-15  Score=138.10  Aligned_cols=117  Identities=20%  Similarity=0.228  Sum_probs=87.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCC--cHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV--NYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~--~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|+|++.+...++..+++|..+......++|..+.+|||||+......  ..+....++.......+|+
T Consensus       217 iG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~  296 (472)
T PRK03003        217 VGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEV  296 (472)
T ss_pred             ECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCE
Confidence            69999999999999999986667778888888877778889999999999998543221  1233333332222258899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +++|++.+. +.+..+..++..+...     .+|+++|+||+|+.
T Consensus       297 vilV~Da~~-~~s~~~~~~~~~~~~~-----~~piIiV~NK~Dl~  335 (472)
T PRK03003        297 AVVLIDASE-PISEQDQRVLSMVIEA-----GRALVLAFNKWDLV  335 (472)
T ss_pred             EEEEEeCCC-CCCHHHHHHHHHHHHc-----CCCEEEEEECcccC
Confidence            999977664 4677777777666543     28999999999995

>cd01850 CDC_Septin CDC/Septin

Probab=99.64  E-value=5.6e-15  Score=129.55  Aligned_cols=116  Identities=18%  Similarity=0.302  Sum_probs=77.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCC-------CCCCC--ccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHH
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTF-------QSEGP--RPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKR   69 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~-------~~~t~--~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~   69 (265)
                      +|.+|+|||||+|+|++......+..       ...|.  .........+|.  +++||||||+++... +....+.|..
T Consensus        10 vG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~-~~~~~~~i~~   88 (276)
T cd01850          10 VGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNIN-NSDCWKPIVD   88 (276)
T ss_pred             EcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCcccccc-chhhHHHHHH
Confidence            69999999999999999876443321       11222  222234445664  689999999987532 2222222221


Q ss_pred             --------H------------HhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           70 --------F------------LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        70 --------~------------l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                              +            .....+|++||+++.....+...|.++++.+.+.      .|+++|+||+|+.
T Consensus        89 yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~~------v~vi~VinK~D~l  156 (276)
T cd01850          89 YIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSKR------VNIIPVIAKADTL  156 (276)
T ss_pred             HHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhcc------CCEEEEEECCCcC
Confidence                    1            1123689999997665545788888888888752      7999999999985

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>cd01898 Obg Obg subfamily

Probab=99.63  E-value=4.2e-15  Score=120.16  Aligned_cols=117  Identities=22%  Similarity=0.207  Sum_probs=78.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe-EEEEEeCCCCCCCCCCc----HHHHHHHHHHHhcCC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF-TLNIVDTPGLIEGGYVN----YHAIQLIKRFLLNKT   75 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~-~v~iiDTPG~~~~~~~~----~~~~~~i~~~l~~~~   75 (265)
                      ||.+|||||||+|+|.+... .++..+++|..+........+. .+.++||||+.+.....    ..++..+      ..
T Consensus         6 vG~~~~GKStl~~~l~~~~~-~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~------~~   78 (170)
T cd01898           6 VGLPNAGKSTLLSAISNAKP-KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHI------ER   78 (170)
T ss_pred             ECCCCCCHHHHHHHHhcCCc-cccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHH------Hh
Confidence            69999999999999998764 4555555666666666666776 89999999986432221    1222222      26


Q ss_pred             ccEEEEEEecCCc-CCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           76 IDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        76 ~d~iL~V~~~d~~-r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      +|++++|++++.. ........+.+.+.+.......+|+++|+||+|+.+
T Consensus        79 ~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~  128 (170)
T cd01898          79 TRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLD  128 (170)
T ss_pred             CCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCC
Confidence            7999999776643 112233455666655432222488999999999853

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.62  E-value=2.2e-15  Score=122.25  Aligned_cols=116  Identities=22%  Similarity=0.238  Sum_probs=76.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeC-CeEEEEEeCCCCCCCCCCcH----HHHHHHHHHHhcCC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA-GFTLNIVDTPGLIEGGYVNY----HAIQLIKRFLLNKT   75 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~-g~~v~iiDTPG~~~~~~~~~----~~~~~i~~~l~~~~   75 (265)
                      +|++|||||||+|+|.+... .++..+++|..+......++ +.++.+|||||+.+.....+    .+...+      .+
T Consensus         2 iG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~------~~   74 (176)
T cd01881           2 VGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHI------RR   74 (176)
T ss_pred             CCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHH------hc
Confidence            69999999999999999875 55666667777766667777 89999999999865322211    222222      37


Q ss_pred             ccEEEEEEecCCcC-----CCH-HHHHHHHHHHHhcCc-----CcCCcEEEEEeCccCC
Q 024586           76 IDVLLYVDRLDVYR-----VDN-LDKQITRAITDNFGE-----QIWKRALIVLTHAQLS  123 (265)
Q Consensus        76 ~d~iL~V~~~d~~r-----~~~-~d~~~l~~l~~~~g~-----~~~~~~ivV~tk~D~~  123 (265)
                      +|++++|++.+...     ... ....+...+......     ...+|+++|+||+|+.
T Consensus        75 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~  133 (176)
T cd01881          75 ADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLD  133 (176)
T ss_pred             cCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcC
Confidence            89999997665421     111 122233333322211     1238999999999985

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.62  E-value=1.9e-14  Score=131.69  Aligned_cols=116  Identities=18%  Similarity=0.210  Sum_probs=84.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC-eEEEEEeCCCCCCCCCCc----HHHHHHHHHHHhcCC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-FTLNIVDTPGLIEGGYVN----YHAIQLIKRFLLNKT   75 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g-~~v~iiDTPG~~~~~~~~----~~~~~~i~~~l~~~~   75 (265)
                      ||.+|||||||+|+|++.+. .+++++.+|..+........+ .++.++||||+.+.....    ..+++.+      ..
T Consensus       165 VG~PNaGKSTLln~Lt~~k~-~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i------~r  237 (390)
T PRK12298        165 LGLPNAGKSTFIRAVSAAKP-KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHL------ER  237 (390)
T ss_pred             EcCCCCCHHHHHHHHhCCcc-cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHH------Hh
Confidence            69999999999999999886 788889999999988887764 579999999998754332    2233333      37


Q ss_pred             ccEEEEEEecCC---cCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           76 IDVLLYVDRLDV---YRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        76 ~d~iL~V~~~d~---~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|++++|+++..   .........+++.+......-..+|.++|+||+|+.
T Consensus       238 advlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~  288 (390)
T PRK12298        238 CRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLL  288 (390)
T ss_pred             CCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccC
Confidence            799999976541   122233455666665542211238999999999984

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.62  E-value=1.5e-14  Score=129.97  Aligned_cols=116  Identities=21%  Similarity=0.241  Sum_probs=83.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeee-CCeEEEEEeCCCCCCCCCCc----HHHHHHHHHHHhcCC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR-AGFTLNIVDTPGLIEGGYVN----YHAIQLIKRFLLNKT   75 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~-~g~~v~iiDTPG~~~~~~~~----~~~~~~i~~~l~~~~   75 (265)
                      ||.++||||||+|+|.+.+. .+++++.+|..+......+ ++.++.++||||+.+.....    ..+++.+.      .
T Consensus       164 VG~PNaGKSTLln~ls~a~~-~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie------~  236 (335)
T PRK12299        164 VGLPNAGKSTLISAVSAAKP-KIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIE------R  236 (335)
T ss_pred             EcCCCCCHHHHHHHHHcCCC-ccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhh------h
Confidence            69999999999999999775 5788888999998888877 56789999999998754433    23333333      6


Q ss_pred             ccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           76 IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        76 ~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|++++|++++.....+....+.+.+......-..+|+++|+||+|+.
T Consensus       237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~  284 (335)
T PRK12299        237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLL  284 (335)
T ss_pred             cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccC
Confidence            799999977664221122234555555432211248999999999985

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.62  E-value=1.7e-14  Score=133.98  Aligned_cols=117  Identities=26%  Similarity=0.353  Sum_probs=87.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcH--HHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY--HAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~--~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|+|+|.+...++..+++|..+.......++..+.+|||||+.+.....+  +.....+..-....+|+
T Consensus       178 vG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~  257 (429)
T TIGR03594       178 IGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADV  257 (429)
T ss_pred             ECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCE
Confidence            6999999999999999988666777788888877777788899999999999976543321  11111111112247899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +++|++... .++..+..++..+.+..     +++++|+||+|+.
T Consensus       258 ~ilV~D~~~-~~~~~~~~~~~~~~~~~-----~~iiiv~NK~Dl~  296 (429)
T TIGR03594       258 VLLVLDATE-GITEQDLRIAGLILEAG-----KALVIVVNKWDLV  296 (429)
T ss_pred             EEEEEECCC-CccHHHHHHHHHHHHcC-----CcEEEEEECcccC
Confidence            999977664 47777877777766542     8999999999985

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.61  E-value=1.1e-14  Score=117.57  Aligned_cols=117  Identities=22%  Similarity=0.243  Sum_probs=76.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHH--HHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAI--QLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~--~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|+|++... .++..+.+|...........+.++.+|||||+.+.....+..+  ..+. .+ ....|+
T Consensus         6 ~G~~~~GKssli~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~-~~-~~~~d~   82 (168)
T cd01897           6 AGYPNVGKSSLVNKLTRAKP-EVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAIT-AL-AHLRAA   82 (168)
T ss_pred             EcCCCCCHHHHHHHHhcCCC-ccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHH-HH-HhccCc
Confidence            69999999999999999874 3444445566555555666788999999999865332221111  1111 11 123589


Q ss_pred             EEEEEecCCcC-CC-HHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYR-VD-NLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r-~~-~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|+|++..... +. .....+++.+.+.+.   ..|+++|+||+|+.
T Consensus        83 ~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~---~~pvilv~NK~Dl~  126 (168)
T cd01897          83 VLFLFDPSETCGYSLEEQLSLFEEIKPLFK---NKPVIVVLNKIDLL  126 (168)
T ss_pred             EEEEEeCCcccccchHHHHHHHHHHHhhcC---cCCeEEEEEccccC
Confidence            99997665422 22 333456677766542   28999999999985

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.61  E-value=1.3e-14  Score=119.03  Aligned_cols=114  Identities=21%  Similarity=0.241  Sum_probs=77.9

Q ss_pred             CCCCCCCHHHHHHHHhCCC-cccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCc---HHHHHHHHHHHhc-CC
Q 024586            1 MGKGGVGKSSTVNSIIGEK-AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN---YHAIQLIKRFLLN-KT   75 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~-~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~---~~~~~~i~~~l~~-~~   75 (265)
                      +|.+|+|||||+|+|++.. ...++...++|..+..+..  + ..+.+|||||++......   .++...+..++.. ..
T Consensus        24 vG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~  100 (179)
T TIGR03598        24 AGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--N-DGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKREN  100 (179)
T ss_pred             EcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--C-CcEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChh
Confidence            6999999999999999985 4455555556655443332  2 378999999987653322   2233333444432 35


Q ss_pred             ccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           76 IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        76 ~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|++++|++.+. +++..+.++++.+...     .+|+++|+||+|+.
T Consensus       101 ~~~ii~vvd~~~-~~~~~~~~~~~~~~~~-----~~pviiv~nK~D~~  142 (179)
T TIGR03598       101 LKGVVLLMDIRH-PLKELDLEMLEWLRER-----GIPVLIVLTKADKL  142 (179)
T ss_pred             hcEEEEEecCCC-CCCHHHHHHHHHHHHc-----CCCEEEEEECcccC
Confidence            789999976553 4777777777766543     28999999999984

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>cd01895 EngA2 EngA2 subfamily

Probab=99.61  E-value=1.7e-14  Score=116.20  Aligned_cols=118  Identities=26%  Similarity=0.345  Sum_probs=79.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcH--HHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY--HAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~--~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|+|++......+..+++|..........++..+.+|||||+.+......  +.............+|+
T Consensus         8 ~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~   87 (174)
T cd01895           8 IGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADV   87 (174)
T ss_pred             EcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCe
Confidence            6999999999999999987655666666666666666777888999999999976532111  11111111112247899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      +++|++.+. ..+..+..+++.+...     ..|+++|+||+|+.+
T Consensus        88 vi~v~d~~~-~~~~~~~~~~~~~~~~-----~~~~iiv~nK~Dl~~  127 (174)
T cd01895          88 VLLVIDATE-GITEQDLRIAGLILEE-----GKALVIVVNKWDLVE  127 (174)
T ss_pred             EEEEEeCCC-CcchhHHHHHHHHHhc-----CCCEEEEEeccccCC
Confidence            999976553 2444444555544332     279999999999864

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.60  E-value=1e-14  Score=135.53  Aligned_cols=116  Identities=19%  Similarity=0.216  Sum_probs=88.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCC-cHHHHHHHHHHHhcCCccEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV-NYHAIQLIKRFLLNKTIDVL   79 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~-~~~~~~~i~~~l~~~~~d~i   79 (265)
                      +|.+|||||||+|+|++...+.+++.+++|.........++|..+.+|||||+...... .+...+....++  ..+|++
T Consensus         5 vG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~--~~ad~v   82 (429)
T TIGR03594         5 VGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAI--EEADVI   82 (429)
T ss_pred             ECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHH--hhCCEE
Confidence            69999999999999999987778888888888888888899999999999998543211 122222222222  478999


Q ss_pred             EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      ++|++... .++..+..+.+.+.+..     +|+++|+||+|+..
T Consensus        83 l~vvD~~~-~~~~~d~~i~~~l~~~~-----~piilVvNK~D~~~  121 (429)
T TIGR03594        83 LFVVDGRE-GLTPEDEEIAKWLRKSG-----KPVILVANKIDGKK  121 (429)
T ss_pred             EEEEeCCC-CCCHHHHHHHHHHHHhC-----CCEEEEEECccCCc
Confidence            99966543 47788888888887642     89999999999853

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.60  E-value=2.6e-14  Score=113.45  Aligned_cols=114  Identities=25%  Similarity=0.288  Sum_probs=79.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCc-HHHHHHHHHHHhcCCccEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN-YHAIQLIKRFLLNKTIDVL   79 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~-~~~~~~i~~~l~~~~~d~i   79 (265)
                      +|.+|+|||||+|+|++...+..+..+++|...........+.++.+|||||+.+..... .........+  ...+|++
T Consensus         7 ~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~--~~~~~~~   84 (157)
T cd04164           7 VGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREA--IEEADLV   84 (157)
T ss_pred             ECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHH--HhhCCEE
Confidence            699999999999999998866666666777776666677788899999999997654221 1111111222  2478999


Q ss_pred             EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      ++|++++. ..+..+.+.+..   .    ..+|+++|+||+|+.+
T Consensus        85 v~v~d~~~-~~~~~~~~~~~~---~----~~~~vi~v~nK~D~~~  121 (157)
T cd04164          85 LFVIDASR-GLDEEDLEILEL---P----ADKPIIVVLNKSDLLP  121 (157)
T ss_pred             EEEEECCC-CCCHHHHHHHHh---h----cCCCEEEEEEchhcCC
Confidence            99977764 344444444433   1    2289999999999853

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.60  E-value=1e-14  Score=119.66  Aligned_cols=114  Identities=21%  Similarity=0.271  Sum_probs=84.7

Q ss_pred             CCCCCCCHHHHHHHHhCCC-cccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCc---HHHHHHHHHHHhcC-C
Q 024586            1 MGKGGVGKSSTVNSIIGEK-AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN---YHAIQLIKRFLLNK-T   75 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~-~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~---~~~~~~i~~~l~~~-~   75 (265)
                      +|+|+|||||+||+|+|.. .+.+|..++.|.....+.  +++. +.++|.||++=.....   +++-..+.+++..+ .
T Consensus        30 ~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~--~~~~-~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~  106 (200)
T COG0218          30 AGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFE--VDDE-LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRAN  106 (200)
T ss_pred             EccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEE--ecCc-EEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchh
Confidence            5999999999999999965 679999888887655433  3332 7899999997543322   34555566666443 4


Q ss_pred             ccEEEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           76 IDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        76 ~d~iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      ..+++++  +|..+ ....|.++++.+.+..     .|+++|+||+|..+
T Consensus       107 L~~vvll--iD~r~~~~~~D~em~~~l~~~~-----i~~~vv~tK~DKi~  149 (200)
T COG0218         107 LKGVVLL--IDARHPPKDLDREMIEFLLELG-----IPVIVVLTKADKLK  149 (200)
T ss_pred             heEEEEE--EECCCCCcHHHHHHHHHHHHcC-----CCeEEEEEccccCC
Confidence            5666666  45545 7778999999998875     89999999999864

>cd04163 Era Era subfamily

Probab=99.60  E-value=2e-14  Score=114.64  Aligned_cols=115  Identities=21%  Similarity=0.249  Sum_probs=79.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHH-HHHHHHhcCCccEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQ-LIKRFLLNKTIDVL   79 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~-~i~~~l~~~~~d~i   79 (265)
                      +|.+|+|||||+|+|+|...+..+....++...........+..+.+|||||+.+......+.+. ....  ....+|++
T Consensus         9 ~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~--~~~~~d~i   86 (168)
T cd04163           9 VGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWS--ALKDVDLV   86 (168)
T ss_pred             ECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHH--HHHhCCEE
Confidence            69999999999999999987655555445544444444556678999999999765433222211 1111  22578999


Q ss_pred             EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ++|++.... +...+..+++.+...     ..|+++|+||+|+.
T Consensus        87 ~~v~d~~~~-~~~~~~~~~~~~~~~-----~~~~iiv~nK~Dl~  124 (168)
T cd04163          87 LFVVDASEP-IGEGDEFILELLKKS-----KTPVILVLNKIDLV  124 (168)
T ss_pred             EEEEECCCc-cCchHHHHHHHHHHh-----CCCEEEEEEchhcc
Confidence            999766642 455666666666654     27899999999985

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.59  E-value=2.9e-14  Score=132.77  Aligned_cols=117  Identities=25%  Similarity=0.346  Sum_probs=87.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcH--HHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY--HAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~--~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|+|+|.+...++..+++|..........++..+.++||||+.......+  +.....+..-....+|+
T Consensus       179 vG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~  258 (435)
T PRK00093        179 IGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADV  258 (435)
T ss_pred             ECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCE
Confidence            6999999999999999998777788888888777677778899999999999976543332  11111111112247899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|+|++... .++..+..++..+.+..     +++++|+||+|+.
T Consensus       259 ~ilViD~~~-~~~~~~~~i~~~~~~~~-----~~~ivv~NK~Dl~  297 (435)
T PRK00093        259 VLLVIDATE-GITEQDLRIAGLALEAG-----RALVIVVNKWDLV  297 (435)
T ss_pred             EEEEEeCCC-CCCHHHHHHHHHHHHcC-----CcEEEEEECccCC
Confidence            999977654 47778887777766542     8999999999985

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.58  E-value=4.4e-14  Score=126.76  Aligned_cols=116  Identities=21%  Similarity=0.229  Sum_probs=82.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC-eEEEEEeCCCCCCCCCCc----HHHHHHHHHHHhcCC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-FTLNIVDTPGLIEGGYVN----YHAIQLIKRFLLNKT   75 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g-~~v~iiDTPG~~~~~~~~----~~~~~~i~~~l~~~~   75 (265)
                      ||.++||||||+|+|.+... .+++++.+|..+......+.+ .++.++||||+.+.....    ..+++.+.      .
T Consensus       163 vG~pnaGKSTLl~~lt~~~~-~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhie------r  235 (329)
T TIGR02729       163 VGLPNAGKSTLISAVSAAKP-KIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIE------R  235 (329)
T ss_pred             EcCCCCCHHHHHHHHhcCCc-cccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHH------h
Confidence            69999999999999999764 577778888888888888877 899999999997654332    23344443      6


Q ss_pred             ccEEEEEEecCCc---CCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           76 IDVLLYVDRLDVY---RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        76 ~d~iL~V~~~d~~---r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|++|+|++++..   ...+....+.+.+......-..+|+++|+||+|+.
T Consensus       236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~  286 (329)
T TIGR02729       236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLL  286 (329)
T ss_pred             hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCC
Confidence            7999999776642   11122233445554432211248999999999984

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.58  E-value=1.8e-14  Score=125.64  Aligned_cols=112  Identities=20%  Similarity=0.288  Sum_probs=88.7

Q ss_pred             CCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcH-----HHHHHHHHHHhcCCc
Q 024586            2 GKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY-----HAIQLIKRFLLNKTI   76 (265)
Q Consensus         2 G~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~-----~~~~~i~~~l~~~~~   76 (265)
                      |.++||||||++++.+.++ .+.+++.||.....++.+.++.++.+|||||+.|-...+.     ++.-.++     .=.
T Consensus       175 G~PNVGKSSlv~~lT~Akp-EvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~-----hl~  248 (346)
T COG1084         175 GYPNVGKSSLVRKLTTAKP-EVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALR-----HLA  248 (346)
T ss_pred             cCCCCcHHHHHHHHhcCCC-ccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHH-----Hhc
Confidence            8999999999999999987 8889999999999999999999999999999988543322     1111222     234


Q ss_pred             cEEEEEEecCCcC-CC-HHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           77 DVLLYVDRLDVYR-VD-NLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        77 d~iL~V~~~d~~r-~~-~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ++|||+++.+.+. ++ +....+++.+...|.    .|+++|+||+|..
T Consensus       249 ~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~----~p~v~V~nK~D~~  293 (346)
T COG1084         249 GVILFLFDPSETCGYSLEEQISLLEEIKELFK----APIVVVINKIDIA  293 (346)
T ss_pred             CeEEEEEcCccccCCCHHHHHHHHHHHHHhcC----CCeEEEEeccccc
Confidence            8999997776544 44 344578899998884    6899999999985

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.58  E-value=5.5e-14  Score=138.19  Aligned_cols=117  Identities=17%  Similarity=0.189  Sum_probs=87.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCc--HHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN--YHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~--~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|+|++.+...++..+++|.........++|..+.+|||||+.......  .+....++.......+|+
T Consensus       456 vG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~adv  535 (712)
T PRK09518        456 VGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSEL  535 (712)
T ss_pred             ECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCE
Confidence            699999999999999999866677788888888777778899999999999986432221  223333322212257899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +++|++.+. ..+..+..++..+.+..     +|+++|+||+|+.
T Consensus       536 vilViDat~-~~s~~~~~i~~~~~~~~-----~piIiV~NK~DL~  574 (712)
T PRK09518        536 ALFLFDASQ-PISEQDLKVMSMAVDAG-----RALVLVFNKWDLM  574 (712)
T ss_pred             EEEEEECCC-CCCHHHHHHHHHHHHcC-----CCEEEEEEchhcC
Confidence            999977654 46777777777665432     8999999999995

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.57  E-value=4.4e-14  Score=131.60  Aligned_cols=114  Identities=18%  Similarity=0.252  Sum_probs=86.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH--hcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL--LNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l--~~~~~d~   78 (265)
                      +|.+|||||||+|+|+|...+.++..+++|.........++|..+.+|||||+.+...   ...+.+....  ...++|+
T Consensus         7 vG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~---~~~~~~~~~~~~~~~~ad~   83 (435)
T PRK00093          7 VGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDD---GFEKQIREQAELAIEEADV   83 (435)
T ss_pred             ECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcch---hHHHHHHHHHHHHHHhCCE
Confidence            6999999999999999998777777888888888788889999999999999976221   1222222111  1247899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|+|++... .++..+..+.+.+.+.     .+|+++|+||+|+.
T Consensus        84 il~vvd~~~-~~~~~~~~~~~~l~~~-----~~piilv~NK~D~~  122 (435)
T PRK00093         84 ILFVVDGRA-GLTPADEEIAKILRKS-----NKPVILVVNKVDGP  122 (435)
T ss_pred             EEEEEECCC-CCCHHHHHHHHHHHHc-----CCcEEEEEECccCc
Confidence            999976653 4677777777777764     28999999999974

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.56  E-value=4.2e-14  Score=127.97  Aligned_cols=118  Identities=18%  Similarity=0.185  Sum_probs=78.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH-hcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR-AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL-LNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~-~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l-~~~~~d~   78 (265)
                      +|.+|+|||||+|+|+|.+. .+.+..++|..+......+ +|.++.++||||+...  .+....+.++..+ ....+|+
T Consensus       195 vG~~NvGKSSLln~L~~~~~-~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~--l~~~lie~f~~tle~~~~ADl  271 (351)
T TIGR03156       195 VGYTNAGKSTLFNALTGADV-YAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRD--LPHELVAAFRATLEEVREADL  271 (351)
T ss_pred             ECCCCCCHHHHHHHHhCCce-eeccCCccccCCEEEEEEeCCCceEEEEecCccccc--CCHHHHHHHHHHHHHHHhCCE
Confidence            69999999999999999873 5666667788887777777 6789999999998432  1122222232222 1247899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|+|++.+..........+.+.+......+  +|+++|+||+|+.
T Consensus       272 il~VvD~s~~~~~~~~~~~~~~L~~l~~~~--~piIlV~NK~Dl~  314 (351)
T TIGR03156       272 LLHVVDASDPDREEQIEAVEKVLEELGAED--IPQLLVYNKIDLL  314 (351)
T ss_pred             EEEEEECCCCchHHHHHHHHHHHHHhccCC--CCEEEEEEeecCC
Confidence            999977654222222222334444432122  7999999999985

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>cd00880 Era_like Era (E

Probab=99.56  E-value=8.6e-14  Score=109.63  Aligned_cols=116  Identities=26%  Similarity=0.404  Sum_probs=76.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeC-CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA-GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVL   79 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~-g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~i   79 (265)
                      +|.+|+||||++|+|++......+...++|........... +..+.++||||+.+...........+..++  ..+|++
T Consensus         2 ~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~--~~~d~i   79 (163)
T cd00880           2 FGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVL--ERADLI   79 (163)
T ss_pred             cCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHH--HhCCEE
Confidence            69999999999999999876545555556665555555544 678999999999876554432222222222  378999


Q ss_pred             EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      ++|++.... .......+.......     ..|+++|+||+|+..
T Consensus        80 l~v~~~~~~-~~~~~~~~~~~~~~~-----~~~~ivv~nK~D~~~  118 (163)
T cd00880          80 LFVVDADLR-ADEEEEKLLELLRER-----GKPVLLVLNKIDLLP  118 (163)
T ss_pred             EEEEeCCCC-CCHHHHHHHHHHHhc-----CCeEEEEEEccccCC
Confidence            999766542 222232222222222     289999999999853

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.55  E-value=5.6e-14  Score=132.14  Aligned_cols=115  Identities=21%  Similarity=0.300  Sum_probs=84.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCC-CcHHHHHHHHHHHhcCCccEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY-VNYHAIQLIKRFLLNKTIDVL   79 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~-~~~~~~~~i~~~l~~~~~d~i   79 (265)
                      ||.+|||||||+|+|++...+.++..+++|.........+++..+.+|||||+..... ..+.+......++  ..+|++
T Consensus        44 vG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~--~~aD~i  121 (472)
T PRK03003         44 VGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAM--RTADAV  121 (472)
T ss_pred             EcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHH--HhCCEE
Confidence            6999999999999999987666777777777777777788899999999999853211 1112222222222  478999


Q ss_pred             EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      |+|++.+. +.+..+..+.+.+.+.     .+|+++|+||+|+.
T Consensus       122 l~VvD~~~-~~s~~~~~i~~~l~~~-----~~piilV~NK~Dl~  159 (472)
T PRK03003        122 LFVVDATV-GATATDEAVARVLRRS-----GKPVILAANKVDDE  159 (472)
T ss_pred             EEEEECCC-CCCHHHHHHHHHHHHc-----CCCEEEEEECccCC
Confidence            99987764 3566677777777653     28999999999984

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.54  E-value=5.5e-14  Score=130.75  Aligned_cols=114  Identities=22%  Similarity=0.269  Sum_probs=81.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH-hcCCccEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL-LNKTIDVL   79 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l-~~~~~d~i   79 (265)
                      +|.+|||||||+|+|++...+.++..+++|.........++|.++.+|||||+.+....-+..  .+.+.. ....+|++
T Consensus       209 vG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~--gi~~~~~~~~~aD~i  286 (442)
T TIGR00450       209 VGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERL--GIEKSFKAIKQADLV  286 (442)
T ss_pred             ECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHH--HHHHHHHHHhhCCEE
Confidence            699999999999999998877788888888887777888899999999999996543211111  111111 12478999


Q ss_pred             EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ++|++.+. ..+..+. ++..+...     .+|+++|+||+|+.
T Consensus       287 l~V~D~s~-~~s~~~~-~l~~~~~~-----~~piIlV~NK~Dl~  323 (442)
T TIGR00450       287 IYVLDASQ-PLTKDDF-LIIDLNKS-----KKPFILVLNKIDLK  323 (442)
T ss_pred             EEEEECCC-CCChhHH-HHHHHhhC-----CCCEEEEEECccCC
Confidence            99977654 3333333 44444321     27999999999984

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd01878 HflX HflX subfamily

Probab=99.53  E-value=1.3e-13  Score=115.33  Aligned_cols=118  Identities=17%  Similarity=0.150  Sum_probs=73.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe-EEEEEeCCCCCCCCCCcHHHHHHHHHHH-hcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF-TLNIVDTPGLIEGGYVNYHAIQLIKRFL-LNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~-~v~iiDTPG~~~~~~~~~~~~~~i~~~l-~~~~~d~   78 (265)
                      +|.+|||||||+|+|++... .+.....+|..+......+.+. .+.+|||||+.+...  ....+.....+ ....+|+
T Consensus        47 iG~~g~GKStLl~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~~~~~~~~~d~  123 (204)
T cd01878          47 VGYTNAGKSTLFNALTGADV-YAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLP--HQLVEAFRSTLEEVAEADL  123 (204)
T ss_pred             ECCCCCCHHHHHHHHhcchh-ccCCccceeccceeEEEEecCCceEEEeCCCccccCCC--HHHHHHHHHHHHHHhcCCe
Confidence            69999999999999999864 3333333445555555555554 899999999865321  12222221111 1247899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +++|++.+..........+.+.+......+  +|+++|+||+|+.
T Consensus       124 ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~--~~viiV~NK~Dl~  166 (204)
T cd01878         124 LLHVVDASDPDYEEQIETVEKVLKELGAED--IPMILVLNKIDLL  166 (204)
T ss_pred             EEEEEECCCCChhhHHHHHHHHHHHcCcCC--CCEEEEEEccccC
Confidence            999977664322222334445555443222  7999999999985

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.53  E-value=9.3e-14  Score=128.09  Aligned_cols=115  Identities=19%  Similarity=0.251  Sum_probs=83.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeC-CeEEEEEeCCCCCCCCCCc----HHHHHHHHHHHhcCC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA-GFTLNIVDTPGLIEGGYVN----YHAIQLIKRFLLNKT   75 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~-g~~v~iiDTPG~~~~~~~~----~~~~~~i~~~l~~~~   75 (265)
                      ||.++||||||+|+|++.+. .+++++.+|..+......+. +.++.++||||+.+.....    ..++..+      ..
T Consensus       164 VG~pNaGKSTLLn~Lt~ak~-kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhi------er  236 (424)
T PRK12297        164 VGFPNVGKSTLLSVVSNAKP-KIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHI------ER  236 (424)
T ss_pred             EcCCCCCHHHHHHHHHcCCC-ccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHH------hh
Confidence            69999999999999999875 56778888888888777776 7899999999998654332    2233333      36


Q ss_pred             ccEEEEEEecCCc--C-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccC
Q 024586           76 IDVLLYVDRLDVY--R-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQL  122 (265)
Q Consensus        76 ~d~iL~V~~~d~~--r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~  122 (265)
                      +|++++|+++++.  + ..+....+.+.|......-..+|.++|+||+|+
T Consensus       237 ~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL  286 (424)
T PRK12297        237 TRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDL  286 (424)
T ss_pred             CCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCC
Confidence            7999999877542  1 222334555666554322234899999999998

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.52  E-value=1e-13  Score=129.37  Aligned_cols=113  Identities=25%  Similarity=0.287  Sum_probs=79.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH-hcCCccEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL-LNKTIDVL   79 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l-~~~~~d~i   79 (265)
                      +|.+|+|||||+|+|++.+.+.+++.+++|.........++|.++.++||||+.++...-+..  .+++.+ ....+|++
T Consensus       221 vG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~--gi~~~~~~~~~aD~i  298 (449)
T PRK05291        221 AGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKI--GIERSREAIEEADLV  298 (449)
T ss_pred             ECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHH--HHHHHHHHHHhCCEE
Confidence            699999999999999999876778888888888777888899999999999996532211110  111111 12478999


Q ss_pred             EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ++|++.+. ..+..+...+..     .  ..+|+++|+||+|+.
T Consensus       299 l~VvD~s~-~~s~~~~~~l~~-----~--~~~piiiV~NK~DL~  334 (449)
T PRK05291        299 LLVLDASE-PLTEEDDEILEE-----L--KDKPVIVVLNKADLT  334 (449)
T ss_pred             EEEecCCC-CCChhHHHHHHh-----c--CCCCcEEEEEhhhcc
Confidence            99976654 233334433332     1  127999999999995

>cd04142 RRP22 RRP22 subfamily

Probab=99.51  E-value=1.1e-12  Score=109.64  Aligned_cols=119  Identities=14%  Similarity=0.102  Sum_probs=71.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCC-ccEEEEeeeCCe--EEEEEeCCCCCCCCC-CcHHHHHHHHHHHhcCCc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGP-RPVMVSRSRAGF--TLNIVDTPGLIEGGY-VNYHAIQLIKRFLLNKTI   76 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~-~~~~~~~~~~g~--~v~iiDTPG~~~~~~-~~~~~~~~i~~~l~~~~~   76 (265)
                      +|.+|||||||+|.+++.+.  ...+.+++. ........++|.  .+.+|||||..+... ..+++......  ....+
T Consensus         6 vG~~~vGKTsLi~~~~~~~f--~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~--~~~~a   81 (198)
T cd04142           6 LGAPGVGKTAIVRQFLAQEF--PEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFR--GLRNS   81 (198)
T ss_pred             ECCCCCcHHHHHHHHHcCCC--CcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHh--hhccC
Confidence            69999999999999998763  222233332 223334456674  578999999864321 12222221111  12478


Q ss_pred             cEEEEEEecCCcCCCHHHHHHHHHHHHhcC-cCcCCcEEEEEeCccCC
Q 024586           77 DVLLYVDRLDVYRVDNLDKQITRAITDNFG-EQIWKRALIVLTHAQLS  123 (265)
Q Consensus        77 d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g-~~~~~~~ivV~tk~D~~  123 (265)
                      |++++|+++++....+....+.+.+.+... .....|+++|+||+|+.
T Consensus        82 d~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~  129 (198)
T cd04142          82 RAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQ  129 (198)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccc
Confidence            999999887653211222345555555431 11237999999999995

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd01861 Rab6 Rab6 subfamily

Probab=99.51  E-value=6.2e-13  Score=106.43  Aligned_cols=110  Identities=19%  Similarity=0.202  Sum_probs=72.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|++++.+.. .+..+..+.+.......+++  ..+.+|||||..       .....+..++  ..+|+
T Consensus         6 iG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~-------~~~~~~~~~~--~~~~~   75 (161)
T cd01861           6 LGDQSVGKTSIITRFMYDTFD-NQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQE-------RFRSLIPSYI--RDSSV   75 (161)
T ss_pred             ECCCCCCHHHHHHHHHcCCCC-ccCCCceeeeEEEEEEEECCEEEEEEEEECCCcH-------HHHHHHHHHh--ccCCE
Confidence            699999999999999998752 22223333344444455555  357999999952       2222233333  47899


Q ss_pred             EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +++|++++... +.. ...++..+....+.  ..|+++|+||+|+.
T Consensus        76 ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~--~~~iilv~nK~D~~  118 (161)
T cd01861          76 AVVVYDITNRQSFDN-TDKWIDDVRDERGN--DVIIVLVGNKTDLS  118 (161)
T ss_pred             EEEEEECcCHHHHHH-HHHHHHHHHHhCCC--CCEEEEEEEChhcc
Confidence            99998887533 333 33566666554443  37999999999985

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>PRK11058 GTPase HflX; Provisional

Probab=99.50  E-value=3e-13  Score=125.19  Aligned_cols=117  Identities=17%  Similarity=0.169  Sum_probs=77.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe-EEEEEeCCCCCCCCCCcHHHHHHHHHHH-hcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF-TLNIVDTPGLIEGGYVNYHAIQLIKRFL-LNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~-~v~iiDTPG~~~~~~~~~~~~~~i~~~l-~~~~~d~   78 (265)
                      +|.+|||||||+|+|++.+.+ +++.+++|.++......+.+. ++.++||||+...  .+....+.+...+ ....+|+
T Consensus       203 VG~~NaGKSSLlN~Lt~~~~~-v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~--lp~~lve~f~~tl~~~~~ADl  279 (426)
T PRK11058        203 VGYTNAGKSTLFNRITEARVY-AADQLFATLDPTLRRIDVADVGETVLADTVGFIRH--LPHDLVAAFKATLQETRQATL  279 (426)
T ss_pred             ECCCCCCHHHHHHHHhCCcee-eccCCCCCcCCceEEEEeCCCCeEEEEecCccccc--CCHHHHHHHHHHHHHhhcCCE
Confidence            699999999999999998864 566667787777766766664 8899999998432  1222222232222 2258999


Q ss_pred             EEEEEecCCcCCCHHHHH-HHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYRVDNLDKQ-ITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~-~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|+|++.+... ...+.. +.+.+......  ..|+++|+||+|+.
T Consensus       280 IL~VvDaS~~~-~~e~l~~v~~iL~el~~~--~~pvIiV~NKiDL~  322 (426)
T PRK11058        280 LLHVVDAADVR-VQENIEAVNTVLEEIDAH--EIPTLLVMNKIDML  322 (426)
T ss_pred             EEEEEeCCCcc-HHHHHHHHHHHHHHhccC--CCCEEEEEEcccCC
Confidence            99997765422 222222 23334433222  27999999999985

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.49  E-value=3e-13  Score=128.04  Aligned_cols=120  Identities=17%  Similarity=0.228  Sum_probs=93.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCC-CcHHHHHHHHHHHhcCCccEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY-VNYHAIQLIKRFLLNKTIDVL   79 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~-~~~~~~~~i~~~l~~~~~d~i   79 (265)
                      +|.+|+||||++|+|+|.+. .++++++.|.+-........|..+.++|+||.++-.. +.++  +..++++....+|++
T Consensus         9 vGNPNvGKTtlFN~LTG~~q-~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE--~Var~~ll~~~~D~i   85 (653)
T COG0370           9 VGNPNVGKTTLFNALTGANQ-KVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDE--KVARDFLLEGKPDLI   85 (653)
T ss_pred             ecCCCccHHHHHHHHhccCc-eecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchH--HHHHHHHhcCCCCEE
Confidence            69999999999999999987 8999999999999999999999999999999987543 2232  234667777899999


Q ss_pred             EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHH
Q 024586           80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE  131 (265)
Q Consensus        80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~  131 (265)
                      +-|  +|+..+..+-.-.++ +.+..     .|+++++|..|.+...+..++
T Consensus        86 vnV--vDAtnLeRnLyltlQ-LlE~g-----~p~ilaLNm~D~A~~~Gi~ID  129 (653)
T COG0370          86 VNV--VDATNLERNLYLTLQ-LLELG-----IPMILALNMIDEAKKRGIRID  129 (653)
T ss_pred             EEE--cccchHHHHHHHHHH-HHHcC-----CCeEEEeccHhhHHhcCCccc
Confidence            999  676554444333333 33332     899999999999766665443

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.49  E-value=4.2e-13  Score=125.46  Aligned_cols=116  Identities=19%  Similarity=0.243  Sum_probs=81.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcH----HHHHHHHHHHhcCCc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY----HAIQLIKRFLLNKTI   76 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~----~~~~~i~~~l~~~~~   76 (265)
                      ||.+|||||||+|+|.+.+. .+++++.+|..+......+.+.++.++||||+.+......    +++..+      ..+
T Consensus       165 VG~PNAGKSTLln~Ls~akp-kIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhi------era  237 (500)
T PRK12296        165 VGFPSAGKSSLISALSAAKP-KIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHI------ERC  237 (500)
T ss_pred             EEcCCCCHHHHHHHHhcCCc-cccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHH------Hhc
Confidence            69999999999999999875 5678888999998888888899999999999976543221    233333      367


Q ss_pred             cEEEEEEecCCc---CCCHHHH-HHHHHHHHhcC---------cCcCCcEEEEEeCccCC
Q 024586           77 DVLLYVDRLDVY---RVDNLDK-QITRAITDNFG---------EQIWKRALIVLTHAQLS  123 (265)
Q Consensus        77 d~iL~V~~~d~~---r~~~~d~-~~l~~l~~~~g---------~~~~~~~ivV~tk~D~~  123 (265)
                      |++++|++++..   +-...+. .+.+.|.....         .-..+|+++|+||+|+.
T Consensus       238 dvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~  297 (500)
T PRK12296        238 AVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVP  297 (500)
T ss_pred             CEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccch
Confidence            999999766421   1111122 23334443321         11248999999999984

>cd04171 SelB SelB subfamily

Probab=99.49  E-value=3.7e-13  Score=107.74  Aligned_cols=109  Identities=22%  Similarity=0.227  Sum_probs=67.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccC--CCCCCCccEEEEeeeC-CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVST--FQSEGPRPVMVSRSRA-GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~--~~~~t~~~~~~~~~~~-g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (265)
                      +|.+|||||||+|+|.|........  ..++|.........+. +..+.+|||||..       .....+..+  ..++|
T Consensus         6 ~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~-------~~~~~~~~~--~~~ad   76 (164)
T cd04171           6 AGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHE-------KFIKNMLAG--AGGID   76 (164)
T ss_pred             EecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChH-------HHHHHHHhh--hhcCC
Confidence            5999999999999999864222211  1223433333444555 7889999999973       222222222  24789


Q ss_pred             EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ++++|++.+.. ........+..+.. .+.   +|+++|+||+|+.
T Consensus        77 ~ii~V~d~~~~-~~~~~~~~~~~~~~-~~~---~~~ilv~NK~Dl~  117 (164)
T cd04171          77 LVLLVVAADEG-IMPQTREHLEILEL-LGI---KRGLVVLTKADLV  117 (164)
T ss_pred             EEEEEEECCCC-ccHhHHHHHHHHHH-hCC---CcEEEEEECcccc
Confidence            99999877642 22333344443332 221   5899999999984

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.49  E-value=3.5e-13  Score=132.56  Aligned_cols=115  Identities=21%  Similarity=0.270  Sum_probs=87.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCC-CcHHHHHHHHHHHhcCCccEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY-VNYHAIQLIKRFLLNKTIDVL   79 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~-~~~~~~~~i~~~l~~~~~d~i   79 (265)
                      +|.+|||||||+|+|+|...+.++..+++|........++++..+.+|||||+..... ....+.+....++  ..+|++
T Consensus       281 vG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~--~~aD~i  358 (712)
T PRK09518        281 VGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAV--SLADAV  358 (712)
T ss_pred             ECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHH--HhCCEE
Confidence            6999999999999999988777788888888777777788899999999999864221 1122222222222  488999


Q ss_pred             EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      |+|++... .++..+..+.+.+.+.     .+|+++|+||+|+.
T Consensus       359 L~VvDa~~-~~~~~d~~i~~~Lr~~-----~~pvIlV~NK~D~~  396 (712)
T PRK09518        359 VFVVDGQV-GLTSTDERIVRMLRRA-----GKPVVLAVNKIDDQ  396 (712)
T ss_pred             EEEEECCC-CCCHHHHHHHHHHHhc-----CCCEEEEEECcccc
Confidence            99976543 4777787788877653     28999999999984

>PRK04213 GTP-binding protein; Provisional

Probab=99.48  E-value=1.5e-12  Score=108.61  Aligned_cols=113  Identities=17%  Similarity=0.188  Sum_probs=68.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcH----HHHHHHHHHHh--cC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY----HAIQLIKRFLL--NK   74 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~----~~~~~i~~~l~--~~   74 (265)
                      +|.+|||||||+|+|.|... .++..+++|..+..  ..++  .+.+|||||++......+    .+...+..++.  ..
T Consensus        15 ~G~~~~GKSsLin~l~~~~~-~~~~~~~~t~~~~~--~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (201)
T PRK04213         15 VGRSNVGKSTLVRELTGKKV-RVGKRPGVTRKPNH--YDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNAD   89 (201)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-ccCCCCceeeCceE--Eeec--ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhh
Confidence            69999999999999999873 45555555544332  2222  689999999865433222    22222222332  24


Q ss_pred             CccEEEEEEecCCcC-C---------CHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           75 TIDVLLYVDRLDVYR-V---------DNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        75 ~~d~iL~V~~~d~~r-~---------~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      .++++++|++.+... +         ...+..+++.+...     ..|+++|+||+|+.
T Consensus        90 ~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~p~iiv~NK~Dl~  143 (201)
T PRK04213         90 RILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLREL-----GIPPIVAVNKMDKI  143 (201)
T ss_pred             hheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHc-----CCCeEEEEECcccc
Confidence            678889886554310 1         11234445444432     28999999999984

>cd04144 Ras2 Ras2 subfamily

Probab=99.47  E-value=9.4e-13  Score=109.08  Aligned_cols=113  Identities=18%  Similarity=0.166  Sum_probs=70.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|+|.+...  ...+.+++..........++.  .+.+|||||.....       .....++  .++|+
T Consensus         5 vG~~~vGKTsli~~l~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~--~~ad~   73 (190)
T cd04144           5 LGDGGVGKTALTIQLCLNHF--VETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYT-------ALRDQWI--REGEG   73 (190)
T ss_pred             ECCCCCCHHHHHHHHHhCCC--CccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhH-------HHHHHHH--HhCCE
Confidence            69999999999999997653  222333333333333445555  47899999963221       1111122  37899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCc-CcCCcEEEEEeCccCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGE-QIWKRALIVLTHAQLSL  124 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~-~~~~~~ivV~tk~D~~~  124 (265)
                      +++|+++++....+.-..+++.+...... ....|+++|+||+|+..
T Consensus        74 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~  120 (190)
T cd04144          74 FILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVY  120 (190)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccc
Confidence            99998887532222234566666655431 12379999999999853

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.47  E-value=2.7e-12  Score=102.84  Aligned_cols=112  Identities=18%  Similarity=0.119  Sum_probs=68.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|++++... .....+..+.+........++  ..+.+|||||..       ........++  ..+|+
T Consensus         6 ~G~~~~GKTtli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~-------~~~~~~~~~~--~~~d~   75 (164)
T smart00175        6 IGDSGVGKSSLLSRFTDGKF-SEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE-------RFRSITSSYY--RGAVG   75 (164)
T ss_pred             ECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCChH-------HHHHHHHHHh--CCCCE
Confidence            69999999999999998864 222112222222333455556  467899999952       1112222232  47899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      +++|+++....-.+.-..++..+.....+  ..|+++|+||+|+.+
T Consensus        76 ~ilv~d~~~~~s~~~~~~~l~~~~~~~~~--~~pivvv~nK~D~~~  119 (164)
T smart00175       76 ALLVYDITNRESFENLKNWLKELREYADP--NVVIMLVGNKSDLED  119 (164)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEEchhccc
Confidence            99997776422111122355555554433  389999999999854

Rab GTPases are implicated in vesicle trafficking.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.47  E-value=1.1e-12  Score=107.36  Aligned_cols=109  Identities=13%  Similarity=0.070  Sum_probs=71.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccC---------------CCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHH
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVST---------------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQ   65 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~---------------~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~   65 (265)
                      +|.+|+|||||+|+|++........               ..+.|...........+..+.+|||||..+.       ..
T Consensus         5 ~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~-------~~   77 (189)
T cd00881           5 AGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDF-------SS   77 (189)
T ss_pred             EeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHH-------HH
Confidence            5999999999999999876432110               1122333333445566788999999997432       11


Q ss_pred             HHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           66 LIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        66 ~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      ....++  ..+|++++|++... .....+...+..+...     ..|+++|+||+|+..
T Consensus        78 ~~~~~~--~~~d~~i~v~d~~~-~~~~~~~~~~~~~~~~-----~~~i~iv~nK~D~~~  128 (189)
T cd00881          78 EVIRGL--SVSDGAILVVDANE-GVQPQTREHLRIAREG-----GLPIIVAINKIDRVG  128 (189)
T ss_pred             HHHHHH--HhcCEEEEEEECCC-CCcHHHHHHHHHHHHC-----CCCeEEEEECCCCcc
Confidence            222222  37899999976553 2445555666655542     289999999999963

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.47  E-value=1.7e-12  Score=104.36  Aligned_cols=112  Identities=20%  Similarity=0.178  Sum_probs=68.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|++.+...  .....+++..........++  ..+.+|||||..+...       ....++  ..+|+
T Consensus         6 ~G~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~-------~~~~~~--~~~~~   74 (164)
T smart00173        6 LGSGGVGKSALTIQFVQGHF--VDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSA-------MRDQYM--RTGEG   74 (164)
T ss_pred             ECCCCCCHHHHHHHHHhCcC--CcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchH-------HHHHHH--hhCCE
Confidence            69999999999999998763  22233333333334444555  4678999999754321       112222  36799


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      +++|+++++......-..+.+.+.+.... ...|+++|.||+|+.+
T Consensus        75 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~pii~v~nK~Dl~~  119 (164)
T smart00173       75 FLLVYSITDRQSFEEIKKFREQILRVKDR-DDVPIVLVGNKCDLES  119 (164)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccc
Confidence            99998777522111223344445444322 1379999999999853

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=99.47  E-value=5.4e-13  Score=111.65  Aligned_cols=117  Identities=19%  Similarity=0.263  Sum_probs=79.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCC--C----CCCCc--cEEEEeeeCCe--EEEEEeCCCCCCCCCC---c-------
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTF--Q----SEGPR--PVMVSRSRAGF--TLNIVDTPGLIEGGYV---N-------   60 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~--~----~~t~~--~~~~~~~~~g~--~v~iiDTPG~~~~~~~---~-------   60 (265)
                      ||.+|.||||++|+|+...+...+..  .    +.|.+  ...+..+.+|.  ++++||||||+|.-..   .       
T Consensus        52 VgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWePI~kyI  131 (336)
T KOG1547|consen   52 VGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWEPIEKYI  131 (336)
T ss_pred             EecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhHHHHHHH
Confidence            69999999999999998754332211  1    11221  12233444565  5699999999974211   1       


Q ss_pred             -HHHHHHHHHHH--------hcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           61 -YHAIQLIKRFL--------LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        61 -~~~~~~i~~~l--------~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                       +++-+.+++.+        .+..+|++||.++..+..+...|.++++.|.+.      .+++-|+.|+|..
T Consensus       132 neQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v------vNvvPVIakaDtl  197 (336)
T KOG1547|consen  132 NEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV------VNVVPVIAKADTL  197 (336)
T ss_pred             HHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh------heeeeeEeecccc
Confidence             12222222222        234689999999998878999999999999998      7899999999974

>cd04140 ARHI_like ARHI subfamily

Probab=99.46  E-value=6.5e-13  Score=107.25  Aligned_cols=113  Identities=20%  Similarity=0.100  Sum_probs=70.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR--AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~--~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|++++... . ....++...........  ....+.+|||||......    ..   ..++  ..+|+
T Consensus         7 vG~~~vGKTsli~~~~~~~f-~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~~---~~~~--~~~~~   75 (165)
T cd04140           7 FGAGGVGKSSLVLRFVKGTF-R-ESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPA----MQ---RLSI--SKGHA   75 (165)
T ss_pred             ECCCCCCHHHHHHHHHhCCC-C-CCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchH----HH---HHHh--hcCCE
Confidence            69999999999999998763 1 22222222222222222  345678999999853221    11   1111  37899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcC-cCCcEEEEEeCccCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQ-IWKRALIVLTHAQLSL  124 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~-~~~~~ivV~tk~D~~~  124 (265)
                      +++|++++..........+++.+.+..+.. ...|+++|+||+|+.+
T Consensus        76 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~  122 (165)
T cd04140          76 FILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESH  122 (165)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccc
Confidence            999988876432233455666676655432 3479999999999854

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.46  E-value=3.7e-13  Score=122.74  Aligned_cols=123  Identities=21%  Similarity=0.229  Sum_probs=88.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|+++||||||+|+|..++...+++.+++|++.....++++|+++.++||.|+.+.....-+.+...+..-....+|+++
T Consensus       274 vGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~  353 (531)
T KOG1191|consen  274 VGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVIL  353 (531)
T ss_pred             EcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEE
Confidence            69999999999999999999999999999999999999999999999999999872221112222222222335889999


Q ss_pred             EEEecCCcCCCHHHHHHHHHHHHhc---Cc----CcCCcEEEEEeCccCCC
Q 024586           81 YVDRLDVYRVDNLDKQITRAITDNF---GE----QIWKRALIVLTHAQLSL  124 (265)
Q Consensus        81 ~V~~~d~~r~~~~d~~~l~~l~~~~---g~----~~~~~~ivV~tk~D~~~  124 (265)
                      +|++... ..+..+..+.+.+....   ..    .-..++++|.||.|+..
T Consensus       354 ~vvda~~-~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s  403 (531)
T KOG1191|consen  354 LVVDAEE-SDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVS  403 (531)
T ss_pred             EEecccc-cccccchHHHHHHHHhccceEEEeccccccceEEEechhhccC
Confidence            9966532 23445555555544422   11    12378899999999863

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.46  E-value=2.1e-12  Score=106.98  Aligned_cols=114  Identities=23%  Similarity=0.237  Sum_probs=72.1

Q ss_pred             CCCCCCCHHHHHHHHhCCC-cccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCc---HHHHHHHHHHHhc-CC
Q 024586            1 MGKGGVGKSSTVNSIIGEK-AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN---YHAIQLIKRFLLN-KT   75 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~-~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~---~~~~~~i~~~l~~-~~   75 (265)
                      +|.+|+|||||+|+|++.. ....+...++|.......  + +.++.+|||||+.......   +.+...+..++.. ..
T Consensus        30 vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~-~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (196)
T PRK00454         30 AGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE--V-NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTREN  106 (196)
T ss_pred             EcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe--c-CCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCcc
Confidence            6999999999999999975 444454444444333222  2 4689999999986543221   2222333334432 35


Q ss_pred             ccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           76 IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        76 ~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ++++++|++.+. .++..+..+.+.+...     ..++++|+||+|+.
T Consensus       107 ~~~~~~v~d~~~-~~~~~~~~i~~~l~~~-----~~~~iiv~nK~Dl~  148 (196)
T PRK00454        107 LKGVVLLIDSRH-PLKELDLQMIEWLKEY-----GIPVLIVLTKADKL  148 (196)
T ss_pred             ceEEEEEEecCC-CCCHHHHHHHHHHHHc-----CCcEEEEEECcccC
Confidence            678888855443 3555555566655432     27899999999984

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.46  E-value=1.3e-12  Score=108.96  Aligned_cols=166  Identities=14%  Similarity=0.089  Sum_probs=96.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCc------cccc---------CCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHH
Q 024586            1 MGKGGVGKSSTVNSIIGEKA------VTVS---------TFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQ   65 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~------~~~~---------~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~   65 (265)
                      +|..++|||||+++|++...      ....         ...+.|........+.++.+++++||||+.       .+..
T Consensus         8 iGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~-------~~~~   80 (195)
T cd01884           8 IGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHA-------DYIK   80 (195)
T ss_pred             ECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHH-------HHHH
Confidence            69999999999999986410      0000         012344444444566678899999999983       2333


Q ss_pred             HHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCC-cEEEEEeCccCCCCCCCCHHHHHhhchHHHHHH
Q 024586           66 LIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWK-RALIVLTHAQLSLPDRLDYEVFCSKRSEALLKF  144 (265)
Q Consensus        66 ~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~-~~ivV~tk~D~~~~~~~~~~~~~~~~~~~l~~~  144 (265)
                      .+...+  ..+|++++|++.+. .....+...+..+.+..     . ++|+|+||+|+..  .....+.+   .+.++++
T Consensus        81 ~~~~~~--~~~D~~ilVvda~~-g~~~~~~~~~~~~~~~~-----~~~iIvviNK~D~~~--~~~~~~~~---~~~i~~~  147 (195)
T cd01884          81 NMITGA--AQMDGAILVVSATD-GPMPQTREHLLLARQVG-----VPYIVVFLNKADMVD--DEELLELV---EMEVREL  147 (195)
T ss_pred             HHHHHh--hhCCEEEEEEECCC-CCcHHHHHHHHHHHHcC-----CCcEEEEEeCCCCCC--cHHHHHHH---HHHHHHH
Confidence            333322  37899999966553 36677777777776543     4 4789999999852  11111112   2345555


Q ss_pred             HhccccccccccccCCchhHhhhcCCcCCCCccccccCCCCCCC---hHHHHHHHHHHh
Q 024586          145 VSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAW---IPNLVKTITEVV  200 (265)
Q Consensus       145 i~~~~~~~~~~~~~~~ip~~~~~n~~~~~~~~~~~~~lp~~~~W---~~~L~~~i~~~~  200 (265)
                      +.+.+ ++.     ..+|++.+++.    ++.+...    ..+|   .+.|++.+.+.+
T Consensus       148 l~~~g-~~~-----~~v~iipiSa~----~g~n~~~----~~~w~~~~~~l~~~l~~~~  192 (195)
T cd01884         148 LSKYG-FDG-----DNTPIVRGSAL----KALEGDD----PNKWVKKILELLDALDSYI  192 (195)
T ss_pred             HHHhc-ccc-----cCCeEEEeeCc----cccCCCC----CCcchhcHhHHHHHHHhCC
Confidence            54432 111     13666655543    2221111    2467   467777776554

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.46  E-value=3.4e-12  Score=106.08  Aligned_cols=108  Identities=14%  Similarity=0.149  Sum_probs=68.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccC---------------CCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHH
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVST---------------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQ   65 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~---------------~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~   65 (265)
                      +|.+|+|||||+|+|++........               ..+.|..........++..+.+|||||..+       +..
T Consensus         8 vG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~-------~~~   80 (194)
T cd01891           8 IAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHAD-------FGG   80 (194)
T ss_pred             EecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHH-------HHH
Confidence            6999999999999999632111111               122333334445566788999999999843       222


Q ss_pred             HHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           66 LIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        66 ~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      .+..++  .++|++++|++... ........++..+...     ..|+++|+||+|+.
T Consensus        81 ~~~~~~--~~~d~~ilV~d~~~-~~~~~~~~~~~~~~~~-----~~p~iiv~NK~Dl~  130 (194)
T cd01891          81 EVERVL--SMVDGVLLLVDASE-GPMPQTRFVLKKALEL-----GLKPIVVINKIDRP  130 (194)
T ss_pred             HHHHHH--HhcCEEEEEEECCC-CccHHHHHHHHHHHHc-----CCCEEEEEECCCCC
Confidence            223222  37899999977664 2334444444444332     27899999999985

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd04136 Rap_like Rap-like subfamily

Probab=99.46  E-value=1.1e-12  Score=105.18  Aligned_cols=112  Identities=18%  Similarity=0.133  Sum_probs=70.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|++.+...  ...+.+++..........++.  .+.+|||||......       ....++  .++|+
T Consensus         7 ~G~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~--~~~~~   75 (163)
T cd04136           7 LGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTA-------MRDLYI--KNGQG   75 (163)
T ss_pred             ECCCCCCHHHHHHHHHhCCC--CcccCCchhhhEEEEEEECCEEEEEEEEECCCccccch-------HHHHHh--hcCCE
Confidence            69999999999999998763  233334443333444555654  567899999743321       111111  37899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      +++|+++++....+.-..+++.+.+.... ...|+++|+||+|+.+
T Consensus        76 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~  120 (163)
T cd04136          76 FVLVYSITSQSSFNDLQDLREQILRVKDT-ENVPMVLVGNKCDLED  120 (163)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccc
Confidence            99998877532112334455566554321 2379999999999853

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd01864 Rab19 Rab19 subfamily

Probab=99.45  E-value=2.5e-12  Score=103.65  Aligned_cols=113  Identities=13%  Similarity=0.105  Sum_probs=70.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||++++.+....... .+..+.........+++  ..+.+|||||...       .......++  ..+|+
T Consensus         9 vG~~~~GKTsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~-------~~~~~~~~~--~~~d~   78 (165)
T cd01864           9 IGDSNVGKTCVVQRFKSGTFSERQ-GNTIGVDFTMKTLEIEGKRVKLQIWDTAGQER-------FRTITQSYY--RSANG   78 (165)
T ss_pred             ECCCCCCHHHHHHHHhhCCCcccC-CCccceEEEEEEEEECCEEEEEEEEECCChHH-------HHHHHHHHh--ccCCE
Confidence            699999999999999986532111 11111222333455566  4679999999521       111222222  47899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP  125 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~  125 (265)
                      +++|++++..........++..+......+  .|+++|+||+|+...
T Consensus        79 ~llv~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~ivv~nK~Dl~~~  123 (165)
T cd01864          79 AIIAYDITRRSSFESVPHWIEEVEKYGASN--VVLLLIGNKCDLEEQ  123 (165)
T ss_pred             EEEEEECcCHHHHHhHHHHHHHHHHhCCCC--CcEEEEEECcccccc
Confidence            999988775322223346777776643332  789999999998643

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.45  E-value=2.9e-12  Score=106.07  Aligned_cols=160  Identities=16%  Similarity=0.259  Sum_probs=99.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccc-----------------cCCCCCCCccEEEEee--eCCeEEEEEeCCCCCCCCCCcH
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTV-----------------STFQSEGPRPVMVSRS--RAGFTLNIVDTPGLIEGGYVNY   61 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~-----------------~~~~~~t~~~~~~~~~--~~g~~v~iiDTPG~~~~~~~~~   61 (265)
                      +|..++|||||+++|++......                 ......|.........  ..+..++++||||..       
T Consensus         9 ~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~-------   81 (188)
T PF00009_consen    9 IGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE-------   81 (188)
T ss_dssp             EESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH-------
T ss_pred             ECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc-------
Confidence            58999999999999996532100                 0112345555566666  889999999999973       


Q ss_pred             HHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHHHHHhhchHHH
Q 024586           62 HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEAL  141 (265)
Q Consensus        62 ~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~~~~l  141 (265)
                      ++...+.+.+  ..+|++++|++... .+.....+.++.+....     .|+++|+||+|+.   ...+++..    +.+
T Consensus        82 ~f~~~~~~~~--~~~D~ailvVda~~-g~~~~~~~~l~~~~~~~-----~p~ivvlNK~D~~---~~~~~~~~----~~~  146 (188)
T PF00009_consen   82 DFIKEMIRGL--RQADIAILVVDAND-GIQPQTEEHLKILRELG-----IPIIVVLNKMDLI---EKELEEII----EEI  146 (188)
T ss_dssp             HHHHHHHHHH--TTSSEEEEEEETTT-BSTHHHHHHHHHHHHTT------SEEEEEETCTSS---HHHHHHHH----HHH
T ss_pred             ceeeccccee--cccccceeeeeccc-ccccccccccccccccc-----cceEEeeeeccch---hhhHHHHH----HHH
Confidence            3333444333  47899999976653 37777888888877654     7899999999984   11222222    223


Q ss_pred             H-HHHhccccccccccccCCchhHhhhcCCcCCCCccccccCCCCCCChHHHHHHHHHHhhC
Q 024586          142 L-KFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLN  202 (265)
Q Consensus       142 ~-~~i~~~~~~~~~~~~~~~ip~~~~~n~~~~~~~~~~~~~lp~~~~W~~~L~~~i~~~~~~  202 (265)
                      + .+++... +...    ..+|++.++.    .++..           +..|++.+.+.+|.
T Consensus       147 ~~~l~~~~~-~~~~----~~~~vi~~Sa----~~g~g-----------i~~Ll~~l~~~~P~  188 (188)
T PF00009_consen  147 KEKLLKEYG-ENGE----EIVPVIPISA----LTGDG-----------IDELLEALVELLPS  188 (188)
T ss_dssp             HHHHHHHTT-STTT----STEEEEEEBT----TTTBT-----------HHHHHHHHHHHS--
T ss_pred             HHHhccccc-cCcc----ccceEEEEec----CCCCC-----------HHHHHHHHHHhCcC
Confidence            3 3333221 1100    1366665553    22221           88999999888763

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.45  E-value=1.6e-12  Score=104.19  Aligned_cols=112  Identities=21%  Similarity=0.158  Sum_probs=70.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|++++...  .+...+++.........+++.  .+.+|||||..+...       ....++  .++|+
T Consensus         8 ~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~--~~~~~   76 (164)
T cd04145           8 VGGGGVGKSALTIQFIQSYF--VTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSA-------MREQYM--RTGEG   76 (164)
T ss_pred             ECCCCCcHHHHHHHHHhCCC--CcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhH-------HHHHHH--hhCCE
Confidence            69999999999999998753  333444443333334445554  578999999753321       122222  37899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      +++|+++++..-...-..++..+.+.... ...|+++|+||+|+..
T Consensus        77 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~piiiv~NK~Dl~~  121 (164)
T cd04145          77 FLLVFSVTDRGSFEEVDKFHTQILRVKDR-DEFPMILVGNKADLEH  121 (164)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCCEEEEeeCccccc
Confidence            99998877533112223455555544321 1379999999999853

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.45  E-value=1e-12  Score=115.34  Aligned_cols=116  Identities=19%  Similarity=0.304  Sum_probs=72.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccC-CC------CCCCcc--EEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHH
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVST-FQ------SEGPRP--VMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKR   69 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~-~~------~~t~~~--~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~   69 (265)
                      +|.+|+|||||||+|++........ ..      ..+...  ......-++.  +++|+||||+++.-.. ...++.|..
T Consensus        10 vG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n-~~~~~~I~~   88 (281)
T PF00735_consen   10 VGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDN-SDCWEPIVD   88 (281)
T ss_dssp             EECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTH-CHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccc-hhhhHHHHH
Confidence            5999999999999999987543321 11      011111  1222333444  5799999999875322 222222222


Q ss_pred             H--------H-----------hcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           70 F--------L-----------LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        70 ~--------l-----------~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +        +           .+..+|++||+++....++.+.|.+.|+.|.+.      .++|.|+.|+|..
T Consensus        89 yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~------vNvIPvIaKaD~l  155 (281)
T PF00735_consen   89 YIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR------VNVIPVIAKADTL  155 (281)
T ss_dssp             HHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT------SEEEEEESTGGGS
T ss_pred             HHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc------ccEEeEEeccccc
Confidence            2        1           124689999998877777999999999999886      7899999999984

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.44  E-value=3.3e-12  Score=102.51  Aligned_cols=112  Identities=19%  Similarity=0.195  Sum_probs=70.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCC-CCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~-t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (265)
                      +|.+|||||||+|++++....  ....++ +...........+  ..+.+|||||...       .......++  .++|
T Consensus         6 vG~~~vGKTsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~--~~~d   74 (168)
T cd04119           6 MGNSGVGKSCIIKRYCEGRFV--SKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE-------YLEVRNEFY--KDTQ   74 (168)
T ss_pred             ECCCCCCHHHHHHHHHhCCCC--CCCCCccceeEEEEEEEECCeEEEEEEEECCccHH-------HHHHHHHHh--ccCC
Confidence            699999999999999998742  222222 1111122333343  4678999999732       222222222  4789


Q ss_pred             EEEEEEecCCcCCCHHHHHHHHHHHHhcCc---CcCCcEEEEEeCccCC
Q 024586           78 VLLYVDRLDVYRVDNLDKQITRAITDNFGE---QIWKRALIVLTHAQLS  123 (265)
Q Consensus        78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~---~~~~~~ivV~tk~D~~  123 (265)
                      ++++|++++..........+++.+.+...+   ....|+++|+||+|+.
T Consensus        75 ~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  123 (168)
T cd04119          75 GVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLT  123 (168)
T ss_pred             EEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcc
Confidence            999998776532222334566667665542   1347999999999985

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd01866 Rab2 Rab2 subfamily

Probab=99.44  E-value=3.3e-12  Score=103.47  Aligned_cols=113  Identities=16%  Similarity=0.132  Sum_probs=69.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|++++........ +..+.+........++  ..+.+|||||..       ........++  ..+|+
T Consensus        10 vG~~~vGKSsLl~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-------~~~~~~~~~~--~~~d~   79 (168)
T cd01866          10 IGDTGVGKSCLLLQFTDKRFQPVHD-LTIGVEFGARMITIDGKQIKLQIWDTAGQE-------SFRSITRSYY--RGAAG   79 (168)
T ss_pred             ECCCCCCHHHHHHHHHcCCCCCCCC-CccceeEEEEEEEECCEEEEEEEEECCCcH-------HHHHHHHHHh--ccCCE
Confidence            6999999999999999876422211 1112222223334444  468999999952       1222222222  47899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP  125 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~  125 (265)
                      +++|+++++......-..++..+.+...+.  .|+++|+||.|+...
T Consensus        80 il~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~pvivv~nK~Dl~~~  124 (168)
T cd01866          80 ALLVYDITRRETFNHLTSWLEDARQHSNSN--MTIMLIGNKCDLESR  124 (168)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccccc
Confidence            999988764322223345666665543322  789999999998643

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd01868 Rab11_like Rab11-like

Probab=99.43  E-value=1.2e-12  Score=105.47  Aligned_cols=112  Identities=16%  Similarity=0.130  Sum_probs=69.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|++++..... ...+..+..........++.  .+.+|||||...       .......++  ..+++
T Consensus         9 vG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~--~~~~~   78 (165)
T cd01868           9 IGDSGVGKSNLLSRFTRNEFNL-DSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQER-------YRAITSAYY--RGAVG   78 (165)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCC-CCCCccceEEEEEEEEECCEEEEEEEEeCCChHH-------HHHHHHHHH--CCCCE
Confidence            6999999999999999886422 22222233333344555554  678999999632       111222222  47899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      +++|++++.......-.++++.+.+....+  .|+++|+||+|+..
T Consensus        79 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~pi~vv~nK~Dl~~  122 (165)
T cd01868          79 ALLVYDITKKQTFENVERWLKELRDHADSN--IVIMLVGNKSDLRH  122 (165)
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECccccc
Confidence            999987764221122234556565544322  78999999999854

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.43  E-value=1e-12  Score=106.65  Aligned_cols=109  Identities=17%  Similarity=0.154  Sum_probs=70.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|++++...  .....++...........++.  .+.+|||||..+.....        .. ...++|+
T Consensus         4 ~G~~~vGKTsli~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--------~~-~~~~~d~   72 (174)
T smart00174        4 VGDGAVGKTCLLISYTTNAF--PEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLR--------PL-SYPDTDV   72 (174)
T ss_pred             ECCCCCCHHHHHHHHHhCCC--CCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhc--------hh-hcCCCCE
Confidence            69999999999999999763  222222222222223444554  57899999975432111        11 1147899


Q ss_pred             EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +++|+++++.. +......++..+.+...   ..|+++|.||+|+.
T Consensus        73 ~ilv~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~  115 (174)
T smart00174       73 FLICFSVDSPASFENVKEKWYPEVKHFCP---NTPIILVGTKLDLR  115 (174)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEecChhhh
Confidence            99998887533 33333456677766543   28999999999985

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.42  E-value=7.6e-13  Score=111.41  Aligned_cols=109  Identities=15%  Similarity=0.112  Sum_probs=69.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccC------------------------------CCCCCCccEEEEeeeCCeEEEEEeC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVST------------------------------FQSEGPRPVMVSRSRAGFTLNIVDT   50 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~------------------------------~~~~t~~~~~~~~~~~g~~v~iiDT   50 (265)
                      +|.+|+|||||+|+|++...+..+.                              ..+.|........++++.++.++||
T Consensus         5 iG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~liDT   84 (208)
T cd04166           5 CGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFIIADT   84 (208)
T ss_pred             EECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEEEEEC
Confidence            6999999999999999754322210                              1234555555666788999999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           51 PGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ||+.+       +...+...+  ..+|++++|++... .....+......+.. .+.   +++|+|+||+|+.
T Consensus        85 pG~~~-------~~~~~~~~~--~~ad~~llVvD~~~-~~~~~~~~~~~~~~~-~~~---~~iIvviNK~D~~  143 (208)
T cd04166          85 PGHEQ-------YTRNMVTGA--STADLAILLVDARK-GVLEQTRRHSYILSL-LGI---RHVVVAVNKMDLV  143 (208)
T ss_pred             CcHHH-------HHHHHHHhh--hhCCEEEEEEECCC-CccHhHHHHHHHHHH-cCC---CcEEEEEEchhcc
Confidence            99732       212222222  47899999976653 244444444444333 221   4678899999984

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.42  E-value=1.3e-12  Score=105.21  Aligned_cols=107  Identities=14%  Similarity=0.060  Sum_probs=67.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeee---CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR---AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~---~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (265)
                      +|.+|+|||||+|+|++..... ....++|..........   .+..+.+|||||..+.       ......++  ..+|
T Consensus         6 iG~~~~GKtsli~~l~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~-------~~~~~~~~--~~~d   75 (168)
T cd01887           6 MGHVDHGKTTLLDKIRKTNVAA-GEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAF-------TNMRARGA--SLTD   75 (168)
T ss_pred             EecCCCCHHHHHHHHHhccccc-ccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHH-------HHHHHHHH--hhcC
Confidence            6999999999999999876422 22222333333333444   3678999999997321       11111121  4789


Q ss_pred             EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ++++|++.+.. ........+..+...     .+|+++|+||+|+.
T Consensus        76 ~il~v~d~~~~-~~~~~~~~~~~~~~~-----~~p~ivv~NK~Dl~  115 (168)
T cd01887          76 IAILVVAADDG-VMPQTIEAIKLAKAA-----NVPFIVALNKIDKP  115 (168)
T ss_pred             EEEEEEECCCC-ccHHHHHHHHHHHHc-----CCCEEEEEEceecc
Confidence            99999777642 234444555554432     27999999999984

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.42  E-value=3e-12  Score=103.21  Aligned_cols=113  Identities=19%  Similarity=0.175  Sum_probs=69.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||++++++...  ...+.+++.........+++.  .+.+|||||.....  .......+      ..+|+
T Consensus         5 vG~~~~GKtsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--~~~~~~~~------~~~d~   74 (165)
T cd04146           5 LGASGVGKSALVVRFLTKRF--IGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQAD--TEQLERSI------RWADG   74 (165)
T ss_pred             ECCCCCcHHHHHHHHHhCcc--ccccCCChHHhceEEEEECCEEEEEEEEECCCCcccc--cchHHHHH------HhCCE
Confidence            69999999999999997652  333333332233334455555  57899999986311  11112222      27899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +++|++++.....+.-..++..+.+........|+++|+||+|+.
T Consensus        75 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  119 (165)
T cd04146          75 FVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLL  119 (165)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchH
Confidence            999988775321122234555555543212238999999999985

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.42  E-value=5.5e-12  Score=101.67  Aligned_cols=112  Identities=21%  Similarity=0.172  Sum_probs=68.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|++++.... ....+..+..........++.  .+.+|||||...       .......++  ..+|+
T Consensus         8 ~G~~~vGKSsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~--~~~~~   77 (166)
T cd01869           8 IGDSGVGKSCLLLRFADDTYT-ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER-------FRTITSSYY--RGAHG   77 (166)
T ss_pred             ECCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEECCCcHh-------HHHHHHHHh--CcCCE
Confidence            699999999999999987632 221122222222333445554  678999999632       111222222  47899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      +++|+++++......-..+++.+.+...++  .|+++|+||+|+..
T Consensus        78 ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~--~~~iiv~nK~Dl~~  121 (166)
T cd01869          78 IIIVYDVTDQESFNNVKQWLQEIDRYASEN--VNKLLVGNKCDLTD  121 (166)
T ss_pred             EEEEEECcCHHHHHhHHHHHHHHHHhCCCC--CcEEEEEEChhccc
Confidence            999987765221122234566665543222  78999999999853

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04175 Rap1 Rap1 subgroup

Probab=99.41  E-value=2.8e-12  Score=103.24  Aligned_cols=112  Identities=18%  Similarity=0.129  Sum_probs=69.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|+++...  ......+++..........++.  .+.+|||||......    ..   ..++  .++|+
T Consensus         7 ~G~~~~GKTsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~~---~~~~--~~~d~   75 (164)
T cd04175           7 LGSGGVGKSALTVQFVQGI--FVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTA----MR---DLYM--KNGQG   75 (164)
T ss_pred             ECCCCCCHHHHHHHHHhCC--CCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchh----HH---HHHH--hhCCE
Confidence            6999999999999999654  2333444444433444555654  457999999743221    11   1111  37899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      +++|+++++....+.-..++..+.+... ....|+++|+||+|+.+
T Consensus        76 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~  120 (164)
T cd04175          76 FVLVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLED  120 (164)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcchh
Confidence            9999887753311222345555554322 12379999999999953

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04176 Rap2 Rap2 subgroup

Probab=99.41  E-value=4.2e-12  Score=101.96  Aligned_cols=111  Identities=19%  Similarity=0.163  Sum_probs=70.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||++++++....  ....++...........+|.  .+.+|||||........    ..   ++  .++|+
T Consensus         7 ~G~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~----~~---~~--~~ad~   75 (163)
T cd04176           7 LGSGGVGKSALTVQFVSGTFI--EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMR----DL---YI--KNGQG   75 (163)
T ss_pred             ECCCCCCHHHHHHHHHcCCCC--CCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchH----HH---HH--hhCCE
Confidence            699999999999999987632  22233333333344555664  46789999974332211    11   11  37899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +++|+++++.+.-..-..++..+.+.... ...|+++|+||+|+.
T Consensus        76 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~piviv~nK~Dl~  119 (163)
T cd04176          76 FIVVYSLVNQQTFQDIKPMRDQIVRVKGY-EKVPIILVGNKVDLE  119 (163)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccch
Confidence            99998887633112234555666654321 237999999999985

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.41  E-value=3.6e-12  Score=112.97  Aligned_cols=118  Identities=19%  Similarity=0.318  Sum_probs=79.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCccccc---CCCC----CCCccEEE--EeeeCCe--EEEEEeCCCCCCCCCC---cHHHHHH
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVS---TFQS----EGPRPVMV--SRSRAGF--TLNIVDTPGLIEGGYV---NYHAIQL   66 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~---~~~~----~t~~~~~~--~~~~~g~--~v~iiDTPG~~~~~~~---~~~~~~~   66 (265)
                      +|++|.||||++|+|++.......   ...+    .|......  ...-+|.  +++||||||++|.-..   .+-+.+.
T Consensus        29 ~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~we~I~~y  108 (373)
T COG5019          29 VGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKCWEPIVDY  108 (373)
T ss_pred             ecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccccHHHHHHH
Confidence            699999999999999998432221   1111    11112222  2233454  5799999999985321   1222222


Q ss_pred             HHH----HH------------hcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           67 IKR----FL------------LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        67 i~~----~l------------~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      |..    ++            .+..+|++||.++..+..+.+.|..+|+.|.+.      .++|-|+.|+|...
T Consensus       109 I~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~------vNlIPVI~KaD~lT  176 (373)
T COG5019         109 IDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKR------VNLIPVIAKADTLT  176 (373)
T ss_pred             HHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhcc------cCeeeeeeccccCC
Confidence            211    22            235789999999888878999999999999987      79999999999853

>cd01865 Rab3 Rab3 subfamily

Probab=99.41  E-value=2.3e-12  Score=104.04  Aligned_cols=112  Identities=15%  Similarity=0.113  Sum_probs=68.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCC-ccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGP-RPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~-~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (265)
                      +|.+|||||||+|++.+...  ...+.++.. .........++  ..+.+|||||....       ......+  ..++|
T Consensus         7 ~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~-------~~~~~~~--~~~~~   75 (165)
T cd01865           7 IGNSSVGKTSFLFRYADDSF--TSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERY-------RTITTAY--YRGAM   75 (165)
T ss_pred             ECCCCCCHHHHHHHHhcCCC--CCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHH-------HHHHHHH--ccCCc
Confidence            69999999999999998763  222222211 11112233344  46899999996321       1111111  24889


Q ss_pred             EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCC
Q 024586           78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP  125 (265)
Q Consensus        78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~  125 (265)
                      ++++|++++.......-..+++.+.+.....  .|+++|+||+|+.+.
T Consensus        76 ~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piivv~nK~Dl~~~  121 (165)
T cd01865          76 GFILMYDITNEESFNAVQDWSTQIKTYSWDN--AQVILVGNKCDMEDE  121 (165)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CCEEEEEECcccCcc
Confidence            9999988764321122245666665544332  789999999999543

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd01889 SelB_euk SelB subfamily

Probab=99.41  E-value=3.3e-12  Score=106.01  Aligned_cols=108  Identities=19%  Similarity=0.170  Sum_probs=63.9

Q ss_pred             CCCCCCCHHHHHHHHhCCC------cccccCCCCCCCccEEEEeeeC--------------CeEEEEEeCCCCCCCCCCc
Q 024586            1 MGKGGVGKSSTVNSIIGEK------AVTVSTFQSEGPRPVMVSRSRA--------------GFTLNIVDTPGLIEGGYVN   60 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~------~~~~~~~~~~t~~~~~~~~~~~--------------g~~v~iiDTPG~~~~~~~~   60 (265)
                      +|.+|+|||||+|+|++..      ........++|.........+.              +..+.+|||||..      
T Consensus         6 ~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~------   79 (192)
T cd01889           6 LGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA------   79 (192)
T ss_pred             EecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH------
Confidence            5999999999999999741      1111112233433333333333              6789999999973      


Q ss_pred             HHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           61 YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        61 ~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                       .....+..  ....+|++++|++... ..+..+...+... ...    ..|+++|+||+|+.
T Consensus        80 -~~~~~~~~--~~~~~d~vi~VvD~~~-~~~~~~~~~~~~~-~~~----~~~~iiv~NK~Dl~  133 (192)
T cd01889          80 -SLIRTIIG--GAQIIDLMLLVVDATK-GIQTQTAECLVIG-EIL----CKKLIVVLNKIDLI  133 (192)
T ss_pred             -HHHHHHHH--HHhhCCEEEEEEECCC-CccHHHHHHHHHH-HHc----CCCEEEEEECcccC
Confidence             11122211  1136799999976553 2334443333322 222    26899999999984

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.41  E-value=2.9e-12  Score=103.28  Aligned_cols=113  Identities=12%  Similarity=0.030  Sum_probs=66.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCccc---ccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVT---VSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~---~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (265)
                      +|.+|+|||||+|.|.+.....   ......+|.........+++..+.+|||||..+.       ......++  .++|
T Consensus         5 vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~--~~~~   75 (167)
T cd04160           5 LGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESL-------RSLWDKYY--AECH   75 (167)
T ss_pred             EecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhh-------HHHHHHHh--CCCC
Confidence            6999999999999998753210   0111122333334456677899999999998432       11122222  4889


Q ss_pred             EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ++++|++.............+..+.+... ....|+++|+||+|+.
T Consensus        76 ~~v~vvd~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~NK~D~~  120 (167)
T cd04160          76 AIIYVIDSTDRERFEESKSALEKVLRNEA-LEGVPLLILANKQDLP  120 (167)
T ss_pred             EEEEEEECchHHHHHHHHHHHHHHHhChh-hcCCCEEEEEEccccc
Confidence            99999765532111111223332222111 1237999999999984

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.41  E-value=4.7e-12  Score=108.51  Aligned_cols=83  Identities=23%  Similarity=0.303  Sum_probs=60.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+|+|||||+|+|.|... .++.++.+|..+......+++.++.++||||+.+...........+..  ..+.+|+++
T Consensus         6 vG~~~~GKStLl~~Ltg~~~-~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~--~~~~ad~il   82 (233)
T cd01896           6 VGFPSVGKSTLLSKLTNTKS-EVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIA--VARTADLIL   82 (233)
T ss_pred             ECCCCCCHHHHHHHHHCCCc-cccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHH--hhccCCEEE
Confidence            69999999999999999874 466677788878777788899999999999987644222211111111  124789999


Q ss_pred             EEEecC
Q 024586           81 YVDRLD   86 (265)
Q Consensus        81 ~V~~~d   86 (265)
                      +|++.+
T Consensus        83 ~V~D~t   88 (233)
T cd01896          83 MVLDAT   88 (233)
T ss_pred             EEecCC
Confidence            996544

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>cd04113 Rab4 Rab4 subfamily

Probab=99.41  E-value=7.6e-12  Score=100.28  Aligned_cols=112  Identities=16%  Similarity=0.092  Sum_probs=69.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|+|++....... .+..+..........++  ..+.+|||||...       +......++  ..+|+
T Consensus         6 ~G~~~vGKTsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~-------~~~~~~~~~--~~~~~   75 (161)
T cd04113           6 IGSSGTGKSCLLHRFVENKFKEDS-QHTIGVEFGSKIIRVGGKRVKLQIWDTAGQER-------FRSVTRSYY--RGAAG   75 (161)
T ss_pred             ECCCCCCHHHHHHHHHhCCCCCCC-CCceeeeEEEEEEEECCEEEEEEEEECcchHH-------HHHhHHHHh--cCCCE
Confidence            699999999999999987642211 11111222222334444  4678999999732       112222222  47899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      +++|++++.......-..++..+.....++  .|+++|+||+|+..
T Consensus        76 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iivv~nK~D~~~  119 (161)
T cd04113          76 ALLVYDITNRTSFEALPTWLSDARALASPN--IVVILVGNKSDLAD  119 (161)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEEchhcch
Confidence            999988775332222245556565554433  78999999999854

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.40  E-value=3.1e-12  Score=103.49  Aligned_cols=111  Identities=17%  Similarity=0.130  Sum_probs=68.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCC-CccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEG-PRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t-~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (265)
                      +|.+|+|||||+|++.+...  ...+.++. ..........++.  .+.+|||||....       ......++  ..+|
T Consensus         9 vG~~~~GKSsl~~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~-------~~~~~~~~--~~ad   77 (167)
T cd01867           9 IGDSGVGKSCLLLRFSEDSF--NPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERF-------RTITTAYY--RGAM   77 (167)
T ss_pred             ECCCCCCHHHHHHHHhhCcC--CcccccCccceEEEEEEEECCEEEEEEEEeCCchHHH-------HHHHHHHh--CCCC
Confidence            69999999999999998763  22222222 2222223445553  6789999996321       11112222  4789


Q ss_pred             EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      ++++|+++++......-..++..+.+....  ..|+++|+||+|+..
T Consensus        78 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~iiv~nK~Dl~~  122 (167)
T cd01867          78 GIILVYDITDEKSFENIRNWMRNIEEHASE--DVERMLVGNKCDMEE  122 (167)
T ss_pred             EEEEEEECcCHHHHHhHHHHHHHHHHhCCC--CCcEEEEEECccccc
Confidence            999998876533112223566666654332  279999999999964

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.40  E-value=2.2e-12  Score=124.13  Aligned_cols=114  Identities=19%  Similarity=0.258  Sum_probs=79.9

Q ss_pred             CCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEE
Q 024586            2 GKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLY   81 (265)
Q Consensus         2 G~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~   81 (265)
                      |.+|+|||||+|++.|... .+++.+++|.+......++++.++.++||||..+......+ .+..+.++....+|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~-~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~-e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQ-TVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLE-EEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCC-eecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchH-HHHHHHHHhhcCCCEEEE
Confidence            8999999999999999875 67778888877777777788999999999999764332211 112233444468899999


Q ss_pred             EEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCC
Q 024586           82 VDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP  125 (265)
Q Consensus        82 V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~  125 (265)
                      |++.+  +... +......+.+.     ..|+++|+||+|+.+.
T Consensus        79 VvDat--~ler-~l~l~~ql~~~-----~~PiIIVlNK~Dl~~~  114 (591)
T TIGR00437        79 VVDAS--NLER-NLYLTLQLLEL-----GIPMILALNLVDEAEK  114 (591)
T ss_pred             EecCC--cchh-hHHHHHHHHhc-----CCCEEEEEehhHHHHh
Confidence            95443  3332 23333333332     2899999999998543

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.40  E-value=2.1e-12  Score=105.68  Aligned_cols=109  Identities=23%  Similarity=0.220  Sum_probs=70.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||++.+.+...  ...+.++...........++  ..+.+|||||........       ..++  .++|+
T Consensus         7 vG~~~vGKTsl~~~~~~~~f--~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------~~~~--~~a~~   75 (175)
T cd01874           7 VGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLR-------PLSY--PQTDV   75 (175)
T ss_pred             ECCCCCCHHHHHHHHHcCCC--CCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhh-------hhhc--ccCCE
Confidence            69999999999999998763  33333443332332445566  467899999985432111       1111  37899


Q ss_pred             EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +++|+++++.. +......++..+.+..+   ..|+++|+||+|+.
T Consensus        76 ~ilv~d~~~~~s~~~~~~~w~~~i~~~~~---~~piilvgnK~Dl~  118 (175)
T cd01874          76 FLVCFSVVSPSSFENVKEKWVPEITHHCP---KTPFLLVGTQIDLR  118 (175)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEECHhhh
Confidence            99998887633 33333346666665432   27999999999984

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04120 Rab12 Rab12 subfamily

Probab=99.40  E-value=2.8e-12  Score=107.59  Aligned_cols=110  Identities=18%  Similarity=0.224  Sum_probs=72.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCC-CCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~-t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (265)
                      +|.+|||||||++.+.....  ...+.++ +.........++|  ..+.+|||+|....       ......++  .++|
T Consensus         6 lG~~gVGKTSli~r~~~~~f--~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~-------~~l~~~y~--~~ad   74 (202)
T cd04120           6 IGSRGVGKTSLMRRFTDDTF--CEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERF-------NSITSAYY--RSAK   74 (202)
T ss_pred             ECcCCCCHHHHHHHHHhCCC--CCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhh-------HHHHHHHh--cCCC
Confidence            69999999999999998763  2222222 2222333455666  56789999997322       11222222  4889


Q ss_pred             EEEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           78 VLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        78 ~iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      ++++|+++++.. +.. -..+++.+.+...++  .++++|.||+|+..
T Consensus        75 ~iIlVfDvtd~~Sf~~-l~~w~~~i~~~~~~~--~piilVgNK~DL~~  119 (202)
T cd04120          75 GIILVYDITKKETFDD-LPKWMKMIDKYASED--AELLLVGNKLDCET  119 (202)
T ss_pred             EEEEEEECcCHHHHHH-HHHHHHHHHHhCCCC--CcEEEEEECccccc
Confidence            999999888643 333 345666666654443  78999999999953

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04123 Rab21 Rab21 subfamily

Probab=99.40  E-value=3.7e-12  Score=101.62  Aligned_cols=111  Identities=21%  Similarity=0.157  Sum_probs=68.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCC-CccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEG-PRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t-~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (265)
                      +|.+|+|||||+|++++.....  ...+++ ...........+  ..+.+|||||.....       .....++  ..+|
T Consensus         6 ~G~~~~GKStli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~--~~~~   74 (162)
T cd04123           6 LGEGRVGKTSLVLRYVENKFNE--KHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYH-------ALGPIYY--RDAD   74 (162)
T ss_pred             ECCCCCCHHHHHHHHHhCCCCC--CcCCccceeEEEEEEEECCEEEEEEEEECCchHHHH-------HhhHHHh--ccCC
Confidence            6999999999999999876422  111222 222222333334  367899999953211       1112222  3789


Q ss_pred             EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      ++++|+++++......-..+++.+......  ..|+++|+||+|+..
T Consensus        75 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~nK~D~~~  119 (162)
T cd04123          75 GAILVYDITDADSFQKVKKWIKELKQMRGN--NISLVIVGNKIDLER  119 (162)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECccccc
Confidence            999998876533212233455666665543  379999999999853

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.40  E-value=2.2e-12  Score=103.38  Aligned_cols=111  Identities=17%  Similarity=0.106  Sum_probs=68.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCC-ccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGP-RPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~-~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (265)
                      +|.+|+|||||+|++++.....  ...++.. ........+++  ..+.+|||||...       .......++  .++|
T Consensus         7 ~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~--~~~~   75 (163)
T cd01860           7 LGDSSVGKSSLVLRFVKNEFSE--NQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQER-------YRSLAPMYY--RGAA   75 (163)
T ss_pred             ECCCCCCHHHHHHHHHcCCCCC--CCCCccceeEEEEEEEECCEEEEEEEEeCCchHH-------HHHHHHHHh--ccCC
Confidence            6999999999999999987422  1111111 11122334444  5678999999521       111111122  4789


Q ss_pred             EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      ++++|++++..........++..+......  ..++++|.||.|+.+
T Consensus        76 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iivv~nK~D~~~  120 (163)
T cd01860          76 AAIVVYDITSEESFEKAKSWVKELQRNASP--NIIIALVGNKADLES  120 (163)
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECccccc
Confidence            999998776433223334566666665433  378999999999853

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.40  E-value=3e-12  Score=126.13  Aligned_cols=117  Identities=15%  Similarity=0.223  Sum_probs=83.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcH--HHHH-HHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY--HAIQ-LIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~--~~~~-~i~~~l~~~~~d   77 (265)
                      +|.+|+|||||+|+|+|.+. .+++.+++|.+........++.++.++||||..+......  ..-+ ..+.++....+|
T Consensus         9 vG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD   87 (772)
T PRK09554          9 IGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDAD   87 (772)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHhccCCC
Confidence            69999999999999999875 7788888888877777788899999999999976432110  1111 223344556899


Q ss_pred             EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCC
Q 024586           78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD  126 (265)
Q Consensus        78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~  126 (265)
                      ++++|++.+  .... ...+...+.+..     .|+++|+||+|..+.+
T Consensus        88 ~vI~VvDat--~ler-~l~l~~ql~e~g-----iPvIvVlNK~Dl~~~~  128 (772)
T PRK09554         88 LLINVVDAS--NLER-NLYLTLQLLELG-----IPCIVALNMLDIAEKQ  128 (772)
T ss_pred             EEEEEecCC--cchh-hHHHHHHHHHcC-----CCEEEEEEchhhhhcc
Confidence            999995443  4333 334445555432     8999999999986433

>cd00154 Rab Rab family

Probab=99.40  E-value=2.8e-12  Score=101.33  Aligned_cols=111  Identities=15%  Similarity=0.089  Sum_probs=67.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR--AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~--~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|++++...... ..+..+..........  ....+.+|||||...       .......++  ..+|+
T Consensus         6 ~G~~~~GKStl~~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~--~~~d~   75 (159)
T cd00154           6 IGDSGVGKTSLLLRFVDGKFDEN-YKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQER-------FRSITPSYY--RGAHG   75 (159)
T ss_pred             ECCCCCCHHHHHHHHHhCcCCCc-cCCceeeeeEEEEEEECCEEEEEEEEecCChHH-------HHHHHHHHh--cCCCE
Confidence            69999999999999999875332 1111111222223333  346789999999731       112222222  47899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +++|++++...--.....++..+......  ..|+++|+||+|+.
T Consensus        76 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~  118 (159)
T cd00154          76 AILVYDITNRESFENLDKWLKELKEYAPE--NIPIILVGNKIDLE  118 (159)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEEccccc
Confidence            99998776522112223455555554422  28999999999985

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04112 Rab26 Rab26 subfamily

Probab=99.39  E-value=8.6e-12  Score=103.40  Aligned_cols=112  Identities=16%  Similarity=0.125  Sum_probs=69.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCC-ccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGP-RPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~-~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (265)
                      +|.+|||||||+|.+.+... ..+...+++. ........+++  ..+.||||||..       ........++  .++|
T Consensus         6 vG~~~vGKTSli~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-------~~~~~~~~~~--~~ad   75 (191)
T cd04112           6 LGDSGVGKTCLLVRFKDGAF-LNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQE-------RFRSVTHAYY--RDAH   75 (191)
T ss_pred             ECCCCCCHHHHHHHHhcCCC-CccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcH-------HHHHhhHHHc--cCCC
Confidence            69999999999999998764 2222222222 22222344555  467899999952       1111112222  4789


Q ss_pred             EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      ++++|++++.......-..++..+.+.....  .|+++|+||+|+..
T Consensus        76 ~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~--~piiiv~NK~Dl~~  120 (191)
T cd04112          76 ALLLLYDITNKASFDNIRAWLTEIKEYAQED--VVIMLLGNKADMSG  120 (191)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEEcccchh
Confidence            9999987765221122345666666654333  79999999999853

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.39  E-value=2e-12  Score=112.32  Aligned_cols=116  Identities=25%  Similarity=0.352  Sum_probs=88.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeE-EEEEeCCCCCCCCCCcH----HHHHHHHHHHhcCC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFT-LNIVDTPGLIEGGYVNY----HAIQLIKRFLLNKT   75 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~-v~iiDTPG~~~~~~~~~----~~~~~i~~~l~~~~   75 (265)
                      ||-+++|||||+|+|...+. .+.+++.||..|......++++. ++|-|.||+.++...++    +.++.|.+      
T Consensus       202 VG~PNAGKSTLL~als~AKp-kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER------  274 (366)
T KOG1489|consen  202 VGFPNAGKSTLLNALSRAKP-KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIER------  274 (366)
T ss_pred             ecCCCCcHHHHHHHhhccCC-cccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHh------
Confidence            68999999999999999987 88899999999999888887775 99999999999877664    78888884      


Q ss_pred             ccEEEEEEecCCcC-CCH-HHHHHHHHHHHhcCcC-cCCcEEEEEeCccCC
Q 024586           76 IDVLLYVDRLDVYR-VDN-LDKQITRAITDNFGEQ-IWKRALIVLTHAQLS  123 (265)
Q Consensus        76 ~d~iL~V~~~d~~r-~~~-~d~~~l~~l~~~~g~~-~~~~~ivV~tk~D~~  123 (265)
                      ++.++||++++... .+. ++.+.+..-.+.+.+. ..+|.++|.||+|+.
T Consensus       275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~  325 (366)
T KOG1489|consen  275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLP  325 (366)
T ss_pred             hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCch
Confidence            48999998877642 122 2233333323333332 347899999999983

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.39  E-value=7.4e-12  Score=100.27  Aligned_cols=113  Identities=16%  Similarity=0.096  Sum_probs=67.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCC-CccEEEEeeeC----CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEG-PRPVMVSRSRA----GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT   75 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t-~~~~~~~~~~~----g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~   75 (265)
                      +|.+|+|||||+|++.+...  .....++. ...........    ...+.+|||||..+       .......++  ++
T Consensus         6 vG~~~~GKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~--~~   74 (162)
T cd04106           6 VGNGNVGKSSMIQRFVKGIF--TKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEE-------FDAITKAYY--RG   74 (162)
T ss_pred             ECCCCCCHHHHHHHHhcCCC--CCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHH-------HHHhHHHHh--cC
Confidence            69999999999999998753  12222221 11111222222    45789999999521       112222232  48


Q ss_pred             ccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCC
Q 024586           76 IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR  127 (265)
Q Consensus        76 ~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~  127 (265)
                      +|++++|+++++......-..++..+.+...   ..|+++|+||+|+.....
T Consensus        75 ~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~  123 (162)
T cd04106          75 AQACILVFSTTDRESFEAIESWKEKVEAECG---DIPMVLVQTKIDLLDQAV  123 (162)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhcccccC
Confidence            8999999887753311222345555554332   279999999999854333

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.39  E-value=9.6e-12  Score=102.59  Aligned_cols=108  Identities=12%  Similarity=0.144  Sum_probs=67.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+||||||++|.+.+......    .+|..+......+++.++.++||||....       ......++  .++|+++
T Consensus        23 vG~~~~GKTsli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~D~~G~~~~-------~~~~~~~~--~~ad~ii   89 (184)
T smart00178       23 LGLDNAGKTTLLHMLKNDRLAQH----QPTQHPTSEELAIGNIKFTTFDLGGHQQA-------RRLWKDYF--PEVNGIV   89 (184)
T ss_pred             ECCCCCCHHHHHHHHhcCCCccc----CCccccceEEEEECCEEEEEEECCCCHHH-------HHHHHHHh--CCCCEEE
Confidence            69999999999999999764222    12344445566678889999999997321       11222222  4889999


Q ss_pred             EEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           81 YVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ||++..+.. +... ...+..+.+... ....|+++|+||+|+.
T Consensus        90 ~vvD~~~~~~~~~~-~~~l~~l~~~~~-~~~~piliv~NK~Dl~  131 (184)
T smart00178       90 YLVDAYDKERFAES-KRELDALLSDEE-LATVPFLILGNKIDAP  131 (184)
T ss_pred             EEEECCcHHHHHHH-HHHHHHHHcChh-hcCCCEEEEEeCcccc
Confidence            997665321 2111 222222222110 1237999999999983

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.39  E-value=4.3e-12  Score=101.21  Aligned_cols=110  Identities=20%  Similarity=0.228  Sum_probs=68.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|++++...  .....+++.........+++.  .+.+|||||..+..       .....++  ..+|+
T Consensus         7 iG~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~l~~~~~--~~~~~   75 (162)
T cd04138           7 VGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS-------AMRDQYM--RTGEG   75 (162)
T ss_pred             ECCCCCCHHHHHHHHHhCCC--cCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchH-------HHHHHHH--hcCCE
Confidence            69999999999999998763  233333333333334455554  46789999974321       1222222  36799


Q ss_pred             EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +++|+++++.. +.. -..++..+.+.... ...|+++|+||+|+.
T Consensus        76 ~i~v~~~~~~~s~~~-~~~~~~~i~~~~~~-~~~piivv~nK~Dl~  119 (162)
T cd04138          76 FLCVFAINSRKSFED-IHTYREQIKRVKDS-DDVPMVLVGNKCDLA  119 (162)
T ss_pred             EEEEEECCCHHHHHH-HHHHHHHHHHhcCC-CCCCEEEEEECcccc
Confidence            99998877532 222 22344555544321 237999999999985

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04122 Rab14 Rab14 subfamily

Probab=99.38  E-value=8.4e-12  Score=100.77  Aligned_cols=113  Identities=16%  Similarity=0.093  Sum_probs=68.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCC-ccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGP-RPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~-~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (265)
                      +|.+|+|||||+|++.+...  ....+++.. .........++.  .+.+|||||...       .......++  .++|
T Consensus         8 iG~~~vGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~--~~~~   76 (166)
T cd04122           8 IGDMGVGKSCLLHQFTEKKF--MADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQER-------FRAVTRSYY--RGAA   76 (166)
T ss_pred             ECCCCCCHHHHHHHHhcCCC--CCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHH-------HHHHHHHHh--cCCC
Confidence            69999999999999998753  222222221 121223344554  678999999631       112222222  4889


Q ss_pred             EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCC
Q 024586           78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD  126 (265)
Q Consensus        78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~  126 (265)
                      ++++|+++++......-..+++.+.....+.  .|+++|.||+|+....
T Consensus        77 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iiiv~nK~Dl~~~~  123 (166)
T cd04122          77 GALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIFLIGNKADLEAQR  123 (166)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECccccccc
Confidence            9999988775321122234555554443333  7899999999995433

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.38  E-value=1.3e-11  Score=98.66  Aligned_cols=114  Identities=20%  Similarity=0.197  Sum_probs=70.9

Q ss_pred             CCCCCCCHHHHHHHHhCCC-cccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCC---cHHHHHHHHHHHhc-CC
Q 024586            1 MGKGGVGKSSTVNSIIGEK-AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV---NYHAIQLIKRFLLN-KT   75 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~-~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~---~~~~~~~i~~~l~~-~~   75 (265)
                      +|.+|+|||||+|+|++.. ....+...+.|.....  ...++ .+.++||||+.+....   .+.....+..++.. ..
T Consensus         5 ~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~--~~~~~-~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (170)
T cd01876           5 AGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINF--FNVND-KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENREN   81 (170)
T ss_pred             EcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEE--EEccC-eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChh
Confidence            6999999999999999543 2233333333333222  22233 8899999998765321   12233334444433 35


Q ss_pred             ccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           76 IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        76 ~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      .++++++++.+. .....+..+++.+....     .|+++|+||+|+.
T Consensus        82 ~~~~~~v~d~~~-~~~~~~~~~~~~l~~~~-----~~vi~v~nK~D~~  123 (170)
T cd01876          82 LKGVVLLIDSRH-GPTEIDLEMLDWLEELG-----IPFLVVLTKADKL  123 (170)
T ss_pred             hhEEEEEEEcCc-CCCHhHHHHHHHHHHcC-----CCEEEEEEchhcC
Confidence            688888865553 23455566666666542     7899999999984

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd04158 ARD1 ARD1 subfamily

Probab=99.38  E-value=6.2e-12  Score=102.12  Aligned_cols=108  Identities=12%  Similarity=0.072  Sum_probs=67.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+|||||||+|++.+...  .. . .+|...........+..+.+|||||..+...       ....++  .++|+++
T Consensus         5 vG~~~~GKTsl~~~l~~~~~--~~-~-~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~-------~~~~~~--~~ad~ii   71 (169)
T cd04158           5 LGLDGAGKTTILFKLKQDEF--MQ-P-IPTIGFNVETVEYKNLKFTIWDVGGKHKLRP-------LWKHYY--LNTQAVV   71 (169)
T ss_pred             ECCCCCCHHHHHHHHhcCCC--CC-c-CCcCceeEEEEEECCEEEEEEECCCChhcch-------HHHHHh--ccCCEEE
Confidence            69999999999999998742  22 2 2233333344566788999999999753221       111111  3789999


Q ss_pred             EEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           81 YVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ||++++... ++.. ..++..+.+... ....|+++|+||+|+.
T Consensus        72 ~V~D~s~~~s~~~~-~~~~~~~~~~~~-~~~~piilv~NK~Dl~  113 (169)
T cd04158          72 FVVDSSHRDRVSEA-HSELAKLLTEKE-LRDALLLIFANKQDVA  113 (169)
T ss_pred             EEEeCCcHHHHHHH-HHHHHHHhcChh-hCCCCEEEEEeCcCcc
Confidence            998776532 3332 333333332211 1126899999999984

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd00157 Rho Rho (Ras homology) family

Probab=99.38  E-value=2.1e-12  Score=104.24  Aligned_cols=110  Identities=19%  Similarity=0.132  Sum_probs=69.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA--GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~--g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|+|++....  ....++............  ...+.+|||||..+.......       +  ...+|+
T Consensus         6 ~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~-------~--~~~~~~   74 (171)
T cd00157           6 VGDGAVGKTCLLISYTTGKFP--TEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPL-------S--YPNTDV   74 (171)
T ss_pred             ECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchh-------h--cCCCCE
Confidence            699999999999999998741  111222222222223333  346899999998643221111       1  147899


Q ss_pred             EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      +++|++++... +......++..+.....   ..|+++|+||+|+..
T Consensus        75 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~  118 (171)
T cd00157          75 FLICFSVDSPSSFENVKTKWIPEIRHYCP---NVPIILVGTKIDLRD  118 (171)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEEccHHhhh
Confidence            99998877522 44444556666665443   389999999999853

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.38  E-value=7e-12  Score=102.28  Aligned_cols=112  Identities=16%  Similarity=0.111  Sum_probs=69.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||++.+.+...  .....++..........+++.  .+.+|||||..+..       .....++  .++|+
T Consensus         8 vG~~~vGKTsL~~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~l~~~~~--~~~d~   76 (172)
T cd04141           8 LGAGGVGKSAVTMQFISHSF--PDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFT-------AMRDQYM--RCGEG   76 (172)
T ss_pred             ECCCCCcHHHHHHHHHhCCC--CCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhH-------HHhHHHh--hcCCE
Confidence            69999999999999998763  222223332233334556664  57899999974321       1112222  37899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      +++|+++++......-..+.+.+.+... ....|+++|+||+|+..
T Consensus        77 ~ilv~d~~~~~Sf~~~~~~~~~i~~~~~-~~~~piilvgNK~Dl~~  121 (172)
T cd04141          77 FIICYSVTDRHSFQEASEFKKLITRVRL-TEDIPLVLVGNKVDLES  121 (172)
T ss_pred             EEEEEECCchhHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhhhh
Confidence            9999888763322222345555555432 12379999999999853

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.38  E-value=1.3e-11  Score=103.19  Aligned_cols=112  Identities=12%  Similarity=0.098  Sum_probs=67.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCC-CccEEEEeeeC-C--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEG-PRPVMVSRSRA-G--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI   76 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t-~~~~~~~~~~~-g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~   76 (265)
                      +|.+|||||||+|++++...  ...+.++. .+.......+. +  ..+.+|||||.....       .....++  .++
T Consensus         6 vG~~~vGKTsli~~l~~~~~--~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~-------~~~~~~~--~~a   74 (201)
T cd04107           6 IGDLGVGKTSIIKRYVHGIF--SQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFG-------GMTRVYY--RGA   74 (201)
T ss_pred             ECCCCCCHHHHHHHHHcCCC--CCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhh-------hhHHHHh--CCC
Confidence            69999999999999998753  12222221 11222233444 3  467899999973221       1112222  488


Q ss_pred             cEEEEEEecCCcC-CCHHHHHHHHHHHHhcC--cCcCCcEEEEEeCccCCC
Q 024586           77 DVLLYVDRLDVYR-VDNLDKQITRAITDNFG--EQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        77 d~iL~V~~~d~~r-~~~~d~~~l~~l~~~~g--~~~~~~~ivV~tk~D~~~  124 (265)
                      |++++|++++... +.. -..++..+.....  .....|+++|+||+|+.+
T Consensus        75 ~~~ilv~D~t~~~s~~~-~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~  124 (201)
T cd04107          75 VGAIIVFDVTRPSTFEA-VLKWKADLDSKVTLPNGEPIPCLLLANKCDLKK  124 (201)
T ss_pred             CEEEEEEECCCHHHHHH-HHHHHHHHHHhhcccCCCCCcEEEEEECCCccc
Confidence            9999998876532 222 2345555554321  123479999999999953

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01893 Miro1 Miro1 subfamily

Probab=99.38  E-value=5.1e-12  Score=102.16  Aligned_cols=109  Identities=17%  Similarity=0.165  Sum_probs=68.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR--AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~--~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|++.+....  ...+. +.........+  .+.++.+|||||..+..       .....++  ..+|+
T Consensus         6 vG~~~vGKTsl~~~l~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~--~~ad~   73 (166)
T cd01893           6 IGDEGVGKSSLIMSLVSEEFP--ENVPR-VLPEITIPADVTPERVPTTIVDTSSRPQDR-------ANLAAEI--RKANV   73 (166)
T ss_pred             ECCCCCCHHHHHHHHHhCcCC--ccCCC-cccceEeeeeecCCeEEEEEEeCCCchhhh-------HHHhhhc--ccCCE
Confidence            699999999999999987632  22222 22222222233  34578999999975321       1122222  47899


Q ss_pred             EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      +++|++++... +......+++.+.....   ..|+++|+||+|+.+
T Consensus        74 ~ilv~d~~~~~s~~~~~~~~~~~i~~~~~---~~pviiv~nK~Dl~~  117 (166)
T cd01893          74 ICLVYSVDRPSTLERIRTKWLPLIRRLGV---KVPIILVGNKSDLRD  117 (166)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEchhccc
Confidence            99998876422 22222345666665432   389999999999953

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>CHL00071 tufA elongation factor Tu

Probab=99.37  E-value=1.9e-11  Score=113.11  Aligned_cols=108  Identities=13%  Similarity=0.017  Sum_probs=71.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCccccc---------------CCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHH
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVS---------------TFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQ   65 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~---------------~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~   65 (265)
                      +|.+++|||||+|+|++......+               ...+.|........+.++.++.++||||..       ++..
T Consensus        18 ~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~-------~~~~   90 (409)
T CHL00071         18 IGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA-------DYVK   90 (409)
T ss_pred             ECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH-------HHHH
Confidence            599999999999999975321100               012333333334455677889999999963       3333


Q ss_pred             HHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCc-EEEEEeCccCC
Q 024586           66 LIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR-ALIVLTHAQLS  123 (265)
Q Consensus        66 ~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~-~ivV~tk~D~~  123 (265)
                      .+.+.+  ..+|++++|++.+. .+...+.+.+..+....     .| +|+++||+|+.
T Consensus        91 ~~~~~~--~~~D~~ilVvda~~-g~~~qt~~~~~~~~~~g-----~~~iIvvvNK~D~~  141 (409)
T CHL00071         91 NMITGA--AQMDGAILVVSAAD-GPMPQTKEHILLAKQVG-----VPNIVVFLNKEDQV  141 (409)
T ss_pred             HHHHHH--HhCCEEEEEEECCC-CCcHHHHHHHHHHHHcC-----CCEEEEEEEccCCC
Confidence            333333  37899999966553 36677777777766542     45 78899999985

>PLN03118 Rab family protein; Provisional

Probab=99.37  E-value=5.7e-12  Score=106.16  Aligned_cols=111  Identities=19%  Similarity=0.214  Sum_probs=65.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCC-CCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~-t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (265)
                      +|.+|||||||+|+|++.....   ..++ +.........+++  ..+.+|||||......       ....++  ..+|
T Consensus        20 vG~~~vGKTsli~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~-------~~~~~~--~~~d   87 (211)
T PLN03118         20 IGDSGVGKSSLLVSFISSSVED---LAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRT-------LTSSYY--RNAQ   87 (211)
T ss_pred             ECcCCCCHHHHHHHHHhCCCCC---cCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHH-------HHHHHH--hcCC
Confidence            6999999999999999876422   2222 1222223344444  4678999999743211       112222  3789


Q ss_pred             EEEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           78 VLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        78 ~iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      ++++|++++... +......+...+.. +......++++|.||+|+..
T Consensus        88 ~~vlv~D~~~~~sf~~~~~~~~~~~~~-~~~~~~~~~ilv~NK~Dl~~  134 (211)
T PLN03118         88 GIILVYDVTRRETFTNLSDVWGKEVEL-YSTNQDCVKMLVGNKVDRES  134 (211)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEECccccc
Confidence            999998776522 22222223333332 22222368899999999854

>cd00876 Ras Ras family

Probab=99.37  E-value=1e-11  Score=98.84  Aligned_cols=112  Identities=20%  Similarity=0.180  Sum_probs=72.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|++++..  ..+...+++..........++  ..+.+|||||..+.       ......++  ...|+
T Consensus         5 ~G~~~~GKTsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~~~~~~--~~~~~   73 (160)
T cd00876           5 LGAGGVGKSAITIQFVKGT--FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEF-------SAMRDLYI--RQGDG   73 (160)
T ss_pred             ECCCCCCHHHHHHHHHhCC--CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHH-------HHHHHHHH--hcCCE
Confidence            6999999999999999876  334444444444444455554  46789999997431       11122222  36799


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      +++|++++.......-..+...+....+. ...|+++|+||+|+..
T Consensus        74 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~  118 (160)
T cd00876          74 FILVYSITDRESFEEIKGYREQILRVKDD-EDIPIVLVGNKCDLEN  118 (160)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCcccc
Confidence            99998776532222234455555554431 2389999999999864

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.37  E-value=2.2e-12  Score=104.37  Aligned_cols=109  Identities=23%  Similarity=0.347  Sum_probs=67.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeee----------------------------------------
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR----------------------------------------   40 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~----------------------------------------   40 (265)
                      +|..++|||||+|+|+|....+++.. ++|..+......-                                        
T Consensus         4 ~G~~ssGKSTliNaLlG~~ilp~~~~-~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (168)
T PF00350_consen    4 VGQFSSGKSTLINALLGRPILPSGVG-PCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIEGK   82 (168)
T ss_dssp             EEBTTSSHHHHHHHHHTSS-SSSSSS-STTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHHTS
T ss_pred             EcCCCCCHHHHHHHHHhcccCccccc-ccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccccc
Confidence            58999999999999999986554433 3444333211100                                        


Q ss_pred             ----------------CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHh
Q 024586           41 ----------------AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDN  104 (265)
Q Consensus        41 ----------------~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~  104 (265)
                                      ....+.++||||+.+......   +.+.+++  ..+|++|||.+.+. .++..+...+......
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~---~~~~~~~--~~~d~vi~V~~~~~-~~~~~~~~~l~~~~~~  156 (168)
T PF00350_consen   83 LEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHT---EITEEYL--PKADVVIFVVDANQ-DLTESDMEFLKQMLDP  156 (168)
T ss_dssp             SS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTS---HHHHHHH--STTEEEEEEEETTS-TGGGHHHHHHHHHHTT
T ss_pred             ccccccceeEEeeccccccceEEEeCCccccchhhhH---HHHHHhh--ccCCEEEEEeccCc-ccchHHHHHHHHHhcC
Confidence                            011279999999977544333   3344444  58899999976653 2555555555544443


Q ss_pred             cCcCcCCcEEEEEeCc
Q 024586          105 FGEQIWKRALIVLTHA  120 (265)
Q Consensus       105 ~g~~~~~~~ivV~tk~  120 (265)
                      ..    .++++|+||+
T Consensus       157 ~~----~~~i~V~nk~  168 (168)
T PF00350_consen  157 DK----SRTIFVLNKA  168 (168)
T ss_dssp             TC----SSEEEEEE-G
T ss_pred             CC----CeEEEEEcCC
Confidence            32    5699999985

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>cd04109 Rab28 Rab28 subfamily

Probab=99.37  E-value=6.5e-12  Score=106.19  Aligned_cols=113  Identities=14%  Similarity=0.165  Sum_probs=70.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCC-CCccEEEEeeeC---CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMVSRSRA---GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI   76 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~-t~~~~~~~~~~~---g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~   76 (265)
                      +|.+|||||||+|.+.+...  ...+.++ +.+.......+.   ...+.||||||....       ......++  ..+
T Consensus         6 vG~~~vGKSsLi~~l~~~~~--~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~-------~~l~~~~~--~~a   74 (215)
T cd04109           6 LGDGAVGKTSLCRRFAKEGF--GKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIG-------GKMLDKYI--YGA   74 (215)
T ss_pred             ECcCCCCHHHHHHHHhcCCC--CCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHH-------HHHHHHHh--hcC
Confidence            69999999999999998763  2222222 223323334443   357899999996321       12222222  488


Q ss_pred             cEEEEEEecCCcCCCHHHHHHHHHHHHhcCc-CcCCcEEEEEeCccCCC
Q 024586           77 DVLLYVDRLDVYRVDNLDKQITRAITDNFGE-QIWKRALIVLTHAQLSL  124 (265)
Q Consensus        77 d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~-~~~~~~ivV~tk~D~~~  124 (265)
                      |++++|++++.......-..+++.+.+.... ....|+++|+||+|+..
T Consensus        75 d~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~  123 (215)
T cd04109          75 HAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEH  123 (215)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccc
Confidence            9999998877533222234566777766543 22357899999999953

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04126 Rab20 Rab20 subfamily

Probab=99.37  E-value=2.2e-11  Score=103.46  Aligned_cols=108  Identities=14%  Similarity=0.133  Sum_probs=68.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+|||||||++++++....  . .. .|.........+....+.||||||......    ..   ..++  ..+|+++
T Consensus         6 vG~~~vGKTSLi~r~~~~~f~--~-~~-~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~----l~---~~~~--~~ad~~I   72 (220)
T cd04126           6 LGDMNVGKTSLLHRYMERRFK--D-TV-STVGGAFYLKQWGPYNISIWDTAGREQFHG----LG---SMYC--RGAAAVI   72 (220)
T ss_pred             ECCCCCcHHHHHHHHhcCCCC--C-CC-CccceEEEEEEeeEEEEEEEeCCCcccchh----hH---HHHh--ccCCEEE
Confidence            699999999999999988742  1 11 222222333344567789999999743221    11   1111  4889999


Q ss_pred             EEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           81 YVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        81 ~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      +|++++... +.... .++..+.+....+  .|+++|.||+|+..
T Consensus        73 lV~Dvt~~~Sf~~l~-~~~~~l~~~~~~~--~piIlVgNK~DL~~  114 (220)
T cd04126          73 LTYDVSNVQSLEELE-DRFLGLTDTANED--CLFAVVGNKLDLTE  114 (220)
T ss_pred             EEEECCCHHHHHHHH-HHHHHHHHhcCCC--CcEEEEEECccccc
Confidence            998887633 33332 3444444443333  68999999999853

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04157 Arl6 Arl6 subfamily

Probab=99.36  E-value=7.1e-12  Score=100.25  Aligned_cols=112  Identities=14%  Similarity=0.114  Sum_probs=66.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+|||||||+|+|.+... ......+ |...........+..+.+|||||..+.       ......++  .++|+++
T Consensus         5 vG~~~~GKTsl~~~l~~~~~-~~~~~~~-t~g~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~--~~~d~ii   73 (162)
T cd04157           5 VGLDNSGKTTIINQLKPENA-QSQIIVP-TVGFNVESFEKGNLSFTAFDMSGQGKY-------RGLWEHYY--KNIQGII   73 (162)
T ss_pred             ECCCCCCHHHHHHHHcccCC-CcceecC-ccccceEEEEECCEEEEEEECCCCHhh-------HHHHHHHH--ccCCEEE
Confidence            69999999999999998753 1222222 222222334457788999999997422       11222222  4789999


Q ss_pred             EEEecCCcCCCHHHHHHHHHHHHhcC-cCcCCcEEEEEeCccCC
Q 024586           81 YVDRLDVYRVDNLDKQITRAITDNFG-EQIWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~~r~~~~d~~~l~~l~~~~g-~~~~~~~ivV~tk~D~~  123 (265)
                      +|++..+..-.......++.+.+... .....|+++|+||+|+.
T Consensus        74 ~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~  117 (162)
T cd04157          74 FVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLP  117 (162)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCcccc
Confidence            99776542111112233444433211 11238999999999984

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04124 RabL2 RabL2 subfamily

Probab=99.36  E-value=5.6e-12  Score=101.49  Aligned_cols=109  Identities=13%  Similarity=0.065  Sum_probs=66.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCC-CCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~-t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (265)
                      +|.+|||||||++++++......  ..++ ...........++  ..+.+|||||.....       .....++  ..+|
T Consensus         6 vG~~~vGKTsli~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~--~~~d   74 (161)
T cd04124           6 LGDSAVGKSKLVERFLMDGYEPQ--QLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQ-------TMHASYY--HKAH   74 (161)
T ss_pred             ECCCCCCHHHHHHHHHhCCCCCC--cCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhh-------hhhHHHh--CCCC
Confidence            69999999999999998753111  1111 1111222333444  467899999974221       1222222  4789


Q ss_pred             EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ++++|++++..........++..+.+...   ..|+++|+||+|+.
T Consensus        75 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~p~ivv~nK~Dl~  117 (161)
T cd04124          75 ACILVFDVTRKITYKNLSKWYEELREYRP---EIPCIVVANKIDLD  117 (161)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEECccCc
Confidence            99999887642211223456666665432   27999999999983

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04134 Rho3 Rho3 subfamily

Probab=99.36  E-value=5e-12  Score=104.70  Aligned_cols=109  Identities=17%  Similarity=0.195  Sum_probs=69.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||++.+++....  ..+.++...........++  ..+.+|||||..+......       .+  -.++|+
T Consensus         6 vG~~~vGKTsli~~~~~~~~~--~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~-------~~--~~~a~~   74 (189)
T cd04134           6 LGDGACGKTSLLNVFTRGYFP--QVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRS-------LS--YADTDV   74 (189)
T ss_pred             ECCCCCCHHHHHHHHhcCCCC--CccCCcceeeeEEEEEECCEEEEEEEEECCCChhcccccc-------cc--ccCCCE
Confidence            699999999999999987642  2222222222222333444  4679999999743321111       01  147899


Q ss_pred             EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +++|+++++.. +......++..+.....   ..|+++|.||+|+.
T Consensus        75 ~ilv~dv~~~~sf~~~~~~~~~~i~~~~~---~~piilvgNK~Dl~  117 (189)
T cd04134          75 IMLCFSVDSPDSLENVESKWLGEIREHCP---GVKLVLVALKCDLR  117 (189)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhc
Confidence            99999888643 43333456777765432   37999999999984

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.36  E-value=1.4e-11  Score=99.88  Aligned_cols=109  Identities=15%  Similarity=0.097  Sum_probs=67.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+|||||||+|.+.+...   .... .|..........++..+.++||||...       .......++  ..+|+++
T Consensus         5 ~G~~~~GKTsl~~~l~~~~~---~~~~-~t~g~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~--~~a~~ii   71 (167)
T cd04161           5 VGLDNAGKTTLVSALQGEIP---KKVA-PTVGFTPTKLRLDKYEVCIFDLGGGAN-------FRGIWVNYY--AEAHGLV   71 (167)
T ss_pred             ECCCCCCHHHHHHHHhCCCC---cccc-CcccceEEEEEECCEEEEEEECCCcHH-------HHHHHHHHH--cCCCEEE
Confidence            69999999999999998621   1222 222233445566788999999999632       112222232  4889999


Q ss_pred             EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ||++.++......-..++..+.+... ....|+++|+||.|+.
T Consensus        72 ~V~D~s~~~s~~~~~~~l~~l~~~~~-~~~~piliv~NK~Dl~  113 (167)
T cd04161          72 FVVDSSDDDRVQEVKEILRELLQHPR-VSGKPILVLANKQDKK  113 (167)
T ss_pred             EEEECCchhHHHHHHHHHHHHHcCcc-ccCCcEEEEEeCCCCc
Confidence            99776642211112334444433211 1237999999999984

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.36  E-value=8.4e-12  Score=107.83  Aligned_cols=113  Identities=21%  Similarity=0.198  Sum_probs=70.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|++++...  ...+.+++.........+++  ..+.||||+|..+..        .+... ....+|+
T Consensus         6 lG~~gvGKTSLi~r~~~~~f--~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~--------~~~~~-~~~~ad~   74 (247)
T cd04143           6 LGASKVGKTAIVSRFLGGRF--EEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFP--------AMRRL-SILTGDV   74 (247)
T ss_pred             ECcCCCCHHHHHHHHHcCCC--CCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhh--------HHHHH-HhccCCE
Confidence            69999999999999998763  22333343333344455666  467899999974321        11111 1137899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcC-------cCcCCcEEEEEeCccCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFG-------EQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g-------~~~~~~~ivV~tk~D~~~  124 (265)
                      +++|+++++....+.-..+++.+.+...       .....|+++|+||+|+..
T Consensus        75 iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~  127 (247)
T cd04143          75 FILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDF  127 (247)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchh
Confidence            9999988863211223455556654311       112479999999999954

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>COG2262 HflX GTPases [General function prediction only]

Probab=99.36  E-value=7.3e-12  Score=112.49  Aligned_cols=118  Identities=19%  Similarity=0.194  Sum_probs=84.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeC-CeEEEEEeCCCCCCCCCCcHHHHHHHHHHH-hcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA-GFTLNIVDTPGLIEGGYVNYHAIQLIKRFL-LNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~-g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l-~~~~~d~   78 (265)
                      +|-|++|||||+|+|+|..+ .+.+.-..|.+++.....+. |+.+.+-||-||.+  ..+....+..+..| ....+|+
T Consensus       198 vGYTNAGKSTL~N~LT~~~~-~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~--~LP~~LV~AFksTLEE~~~aDl  274 (411)
T COG2262         198 VGYTNAGKSTLFNALTGADV-YVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIR--DLPHPLVEAFKSTLEEVKEADL  274 (411)
T ss_pred             EeeccccHHHHHHHHhccCe-eccccccccccCceeEEEeCCCceEEEecCccCcc--cCChHHHHHHHHHHHHhhcCCE
Confidence            69999999999999999886 44455567777777777776 79999999999975  34445555555555 2358999


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|.|++.++...........+.|.++...+  +|+|+|+||.|..
T Consensus       275 llhVVDaSdp~~~~~~~~v~~vL~el~~~~--~p~i~v~NKiD~~  317 (411)
T COG2262         275 LLHVVDASDPEILEKLEAVEDVLAEIGADE--IPIILVLNKIDLL  317 (411)
T ss_pred             EEEEeecCChhHHHHHHHHHHHHHHcCCCC--CCEEEEEeccccc
Confidence            999976665433333334445555553344  8999999999975

>cd04117 Rab15 Rab15 subfamily

Probab=99.36  E-value=9.1e-12  Score=100.31  Aligned_cols=114  Identities=16%  Similarity=0.169  Sum_probs=70.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||++.+++.... ....+..+..........++  ..+.+|||||.....       .....++  ..+|+
T Consensus         6 vG~~~~GKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-------~~~~~~~--~~~~~   75 (161)
T cd04117           6 IGDSGVGKTCLLCRFTDNEFH-SSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQ-------TITKQYY--RRAQG   75 (161)
T ss_pred             ECcCCCCHHHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHH-------hhHHHHh--cCCcE
Confidence            699999999999999987642 11111111222233445555  457899999963211       1122222  47899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD  126 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~  126 (265)
                      +++|+++++......-..+++.+......  ..++++|.||.|+...+
T Consensus        76 ~i~v~d~~~~~sf~~~~~~~~~~~~~~~~--~~~iilvgnK~Dl~~~~  121 (161)
T cd04117          76 IFLVYDISSERSYQHIMKWVSDVDEYAPE--GVQKILIGNKADEEQKR  121 (161)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECccccccc
Confidence            99999887643222334566666554322  37899999999985433

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04177 RSR1 RSR1 subgroup

Probab=99.35  E-value=1.9e-11  Score=98.96  Aligned_cols=113  Identities=18%  Similarity=0.153  Sum_probs=70.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+||||++|++.+...  .....+++.........+++  ..+.+|||||........       ..++  .++|+
T Consensus         7 iG~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~--~~~~~   75 (168)
T cd04177           7 LGAGGVGKSALTVQFVQNVF--IESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMR-------ELYI--KSGQG   75 (168)
T ss_pred             ECCCCCCHHHHHHHHHhCCC--CcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhh-------HHHH--hhCCE
Confidence            69999999999999997763  22233333333233334444  467899999975432211       1111  26799


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP  125 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~  125 (265)
                      +++|+++++...-.....+.+.+.+.... ...|+++|+||.|+...
T Consensus        76 ~vlv~~~~~~~s~~~~~~~~~~i~~~~~~-~~~piiiv~nK~D~~~~  121 (168)
T cd04177          76 FLLVYSVTSEASLNELGELREQVLRIKDS-DNVPMVLVGNKADLEDD  121 (168)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCCEEEEEEChhcccc
Confidence            99998777532222234455666554432 23799999999998543

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd01862 Rab7 Rab7 subfamily

Probab=99.35  E-value=1.1e-11  Score=100.14  Aligned_cols=114  Identities=18%  Similarity=0.076  Sum_probs=66.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|++++.... ....+..+.........+.+.  .+.+|||||....       ......++  .++|+
T Consensus         6 iG~~~~GKSsl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~--~~~d~   75 (172)
T cd01862           6 LGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERF-------QSLGVAFY--RGADC   75 (172)
T ss_pred             ECCCCCCHHHHHHHHhcCCCC-cCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHH-------HhHHHHHh--cCCCE
Confidence            699999999999999998642 111111122222233445554  4679999996321       11112222  47899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCc--CcCCcEEEEEeCccCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGE--QIWKRALIVLTHAQLSL  124 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~--~~~~~~ivV~tk~D~~~  124 (265)
                      +++|++++.......-..+.+.+......  ....|+++|+||+|+.+
T Consensus        76 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  123 (172)
T cd01862          76 CVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE  123 (172)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc
Confidence            99998776532111122334444333321  12379999999999964

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04154 Arl2 Arl2 subfamily

Probab=99.35  E-value=7.2e-12  Score=101.97  Aligned_cols=108  Identities=19%  Similarity=0.258  Sum_probs=66.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+|||||||+|+|++....   ...+ |.........+++..+.+|||||....       ......++  .++|+++
T Consensus        20 vG~~~~GKTsL~~~l~~~~~~---~~~~-t~g~~~~~~~~~~~~l~l~D~~G~~~~-------~~~~~~~~--~~~d~~i   86 (173)
T cd04154          20 LGLDNAGKTTILKKLLGEDID---TISP-TLGFQIKTLEYEGYKLNIWDVGGQKTL-------RPYWRNYF--ESTDALI   86 (173)
T ss_pred             ECCCCCCHHHHHHHHccCCCC---CcCC-ccccceEEEEECCEEEEEEECCCCHHH-------HHHHHHHh--CCCCEEE
Confidence            699999999999999987532   1212 222223345567889999999997421       11222222  4789999


Q ss_pred             EEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           81 YVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|++.++.. +... ..++..+.+.. .....|+++|+||+|+.
T Consensus        87 ~v~d~~~~~s~~~~-~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~  128 (173)
T cd04154          87 WVVDSSDRLRLDDC-KRELKELLQEE-RLAGATLLILANKQDLP  128 (173)
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHhCh-hhcCCCEEEEEECcccc
Confidence            998776532 2222 22333332211 11238999999999984

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd01890 LepA LepA subfamily

Probab=99.35  E-value=2.1e-11  Score=99.40  Aligned_cols=108  Identities=15%  Similarity=0.147  Sum_probs=63.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccc-----cCC---------CCCCCccEEEEeee-----CCeEEEEEeCCCCCCCCCCcH
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTV-----STF---------QSEGPRPVMVSRSR-----AGFTLNIVDTPGLIEGGYVNY   61 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~-----~~~---------~~~t~~~~~~~~~~-----~g~~v~iiDTPG~~~~~~~~~   61 (265)
                      +|.+|+|||||+|+|++......     ..+         .+.|.........+     .+..+.+|||||..+.     
T Consensus         6 vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-----   80 (179)
T cd01890           6 IAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF-----   80 (179)
T ss_pred             EeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh-----
Confidence            69999999999999998532110     000         11222222222222     3567889999998542     


Q ss_pred             HHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           62 HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        62 ~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                        ...+..++  .++|++++|++... ..+..+...+..+..   .  ..|+++|+||+|+.
T Consensus        81 --~~~~~~~~--~~ad~~i~v~D~~~-~~~~~~~~~~~~~~~---~--~~~iiiv~NK~Dl~  132 (179)
T cd01890          81 --SYEVSRSL--AACEGALLLVDATQ-GVEAQTLANFYLALE---N--NLEIIPVINKIDLP  132 (179)
T ss_pred             --HHHHHHHH--HhcCeEEEEEECCC-CccHhhHHHHHHHHH---c--CCCEEEEEECCCCC
Confidence              22223332  37899999977653 233334333333322   1  27899999999984

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.34  E-value=5.5e-12  Score=102.66  Aligned_cols=109  Identities=21%  Similarity=0.201  Sum_probs=70.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||++++++..  ....+.+++..........++  ..+.+|||||.......        ... ...++|+
T Consensus         6 ~G~~~~GKtsl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~-~~~~a~~   74 (173)
T cd04130           6 VGDGAVGKTSLIVSYTTNG--YPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKL--------RPL-CYPDTDV   74 (173)
T ss_pred             ECCCCCCHHHHHHHHHhCC--CCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccc--------ccc-ccCCCcE
Confidence            5999999999999998865  233344443333333445555  46688999998433211        111 1147899


Q ss_pred             EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +++|+++++.. +......++..+.....   ..|+++|+||+|+.
T Consensus        75 ~i~v~d~~~~~sf~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~  117 (173)
T cd04130          75 FLLCFSVVNPSSFQNISEKWIPEIRKHNP---KAPIILVGTQADLR  117 (173)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEeeChhhc
Confidence            99998877533 43333456666665322   27999999999985

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.34  E-value=1.2e-11  Score=98.72  Aligned_cols=108  Identities=14%  Similarity=0.127  Sum_probs=66.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+|+|||||+|++++.....   . ..|.........+.+..+.+|||||.....       .....++  ..+|+++
T Consensus         5 iG~~~~GKssli~~~~~~~~~~---~-~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~--~~~~~~i   71 (158)
T cd00878           5 LGLDGAGKTTILYKLKLGEVVT---T-IPTIGFNVETVEYKNVSFTVWDVGGQDKIR-------PLWKHYY--ENTNGII   71 (158)
T ss_pred             EcCCCCCHHHHHHHHhcCCCCC---C-CCCcCcceEEEEECCEEEEEEECCCChhhH-------HHHHHHh--ccCCEEE
Confidence            6999999999999999987311   1 122223334455678899999999974321       1112222  3779999


Q ss_pred             EEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           81 YVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|+++.... +... ...+..+..... ....|+++|+||+|+.
T Consensus        72 ~v~D~~~~~~~~~~-~~~~~~~~~~~~-~~~~piiiv~nK~D~~  113 (158)
T cd00878          72 FVVDSSDRERIEEA-KEELHKLLNEEE-LKGVPLLIFANKQDLP  113 (158)
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHhCcc-cCCCcEEEEeeccCCc
Confidence            997766421 2222 223333322211 1237999999999985

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.34  E-value=1.9e-11  Score=98.93  Aligned_cols=108  Identities=13%  Similarity=0.101  Sum_probs=66.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+|||||||++++.+...  .....++. ..........+.++.+|||||......   .....+      .++|+++
T Consensus         5 vG~~~vGKTsli~~~~~~~~--~~~~~pt~-g~~~~~i~~~~~~l~i~Dt~G~~~~~~---~~~~~~------~~ad~ii   72 (164)
T cd04162           5 LGLDGAGKTSLLHSLSSERS--LESVVPTT-GFNSVAIPTQDAIMELLEIGGSQNLRK---YWKRYL------SGSQGLI   72 (164)
T ss_pred             ECCCCCCHHHHHHHHhcCCC--cccccccC-CcceEEEeeCCeEEEEEECCCCcchhH---HHHHHH------hhCCEEE
Confidence            69999999999999998753  22222221 122234455678899999999743221   111122      3789999


Q ss_pred             EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ||++.++.......+.++..+....   ...|+++|.||.|+.
T Consensus        73 ~V~D~t~~~s~~~~~~~l~~~~~~~---~~~piilv~NK~Dl~  112 (164)
T cd04162          73 FVVDSADSERLPLARQELHQLLQHP---PDLPLVVLANKQDLP  112 (164)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhCC---CCCcEEEEEeCcCCc
Confidence            9977664221112223333333221   238999999999984

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>PTZ00369 Ras-like protein; Provisional

Probab=99.34  E-value=1.8e-11  Score=101.29  Aligned_cols=111  Identities=18%  Similarity=0.147  Sum_probs=69.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||++++.+...  .....++..........+++.  .+.+|||||..+....       ...++  .++|+
T Consensus        11 iG~~~~GKTsLi~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l-------~~~~~--~~~d~   79 (189)
T PTZ00369         11 VGGGGVGKSALTIQFIQNHF--IDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAM-------RDQYM--RTGQG   79 (189)
T ss_pred             ECCCCCCHHHHHHHHhcCCC--CcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhh-------HHHHh--hcCCE
Confidence            69999999999999998763  222233332333333344544  5678999998543221       11122  37899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +++|+++++......-..+.+.+.+.... ...|+++|.||+|+.
T Consensus        80 iilv~D~s~~~s~~~~~~~~~~i~~~~~~-~~~piiiv~nK~Dl~  123 (189)
T PTZ00369         80 FLCVYSITSRSSFEEIASFREQILRVKDK-DRVPMILVGNKCDLD  123 (189)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccc
Confidence            99998877533212334555666554322 136899999999984

>cd04114 Rab30 Rab30 subfamily

Probab=99.34  E-value=9.9e-12  Score=100.31  Aligned_cols=112  Identities=16%  Similarity=0.154  Sum_probs=67.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||++++.+... .....+..+.........+.+.  .+.++||||..+.       ......++  ..+|+
T Consensus        13 ~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~--~~~d~   82 (169)
T cd04114          13 IGNAGVGKTCLVRRFTQGLF-PPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERF-------RSITQSYY--RSANA   82 (169)
T ss_pred             ECCCCCCHHHHHHHHHhCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHH-------HHHHHHHh--cCCCE
Confidence            69999999999999997653 1111111222333334556664  5788999996321       11112222  47899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      +++|++++.......-..++..+......+  .|+++|+||+|+.+
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~~~i~v~NK~D~~~  126 (169)
T cd04114          83 LILTYDITCEESFRCLPEWLREIEQYANNK--VITILVGNKIDLAE  126 (169)
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECccccc
Confidence            999987764221111234555565554333  78899999999853

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.34  E-value=2.8e-11  Score=97.14  Aligned_cols=112  Identities=14%  Similarity=0.102  Sum_probs=66.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCC-CccEEEEeee---CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEG-PRPVMVSRSR---AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI   76 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t-~~~~~~~~~~---~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~   76 (265)
                      +|.+|||||||++++.+........+.+++ ..........   ...++.+|||||..       ........++  ..+
T Consensus         6 vG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~-------~~~~~~~~~~--~~~   76 (164)
T cd04101           6 VGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQE-------LYSDMVSNYW--ESP   76 (164)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHH-------HHHHHHHHHh--CCC
Confidence            699999999999999864221222332222 1111122222   23678999999962       1112223333  478


Q ss_pred             cEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           77 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        77 d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      |++++|+++++......-..+++.+....   ...|+++|+||+|+.+
T Consensus        77 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~  121 (164)
T cd04101          77 SVFILVYDVSNKASFENCSRWVNKVRTAS---KHMPGVLVGNKMDLAD  121 (164)
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECccccc
Confidence            99999988775221122245556555542   2379999999999853

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04110 Rab35 Rab35 subfamily

Probab=99.34  E-value=1.5e-11  Score=102.66  Aligned_cols=110  Identities=17%  Similarity=0.127  Sum_probs=66.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCC-CCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~-t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (265)
                      +|.+|||||||++++++....  ..+.++ +...........|  ..+.+|||||.....       .....++  ..+|
T Consensus        12 vG~~~vGKTsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~-------~~~~~~~--~~a~   80 (199)
T cd04110          12 IGDSGVGKSSLLLRFADNTFS--GSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFR-------TITSTYY--RGTH   80 (199)
T ss_pred             ECCCCCCHHHHHHHHhcCCCC--CCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHH-------HHHHHHh--CCCc
Confidence            699999999999999987631  111111 1122222334445  467899999963211       1112222  4689


Q ss_pred             EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      ++++|+++........-..+++.+.....   ..|+++|+||+|+.+
T Consensus        81 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~---~~piivVgNK~Dl~~  124 (199)
T cd04110          81 GVIVVYDVTNGESFVNVKRWLQEIEQNCD---DVCKVLVGNKNDDPE  124 (199)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECccccc
Confidence            99999877643211222345565555432   278999999999853

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04125 RabA_like RabA-like subfamily

Probab=99.34  E-value=5.9e-12  Score=103.95  Aligned_cols=111  Identities=22%  Similarity=0.117  Sum_probs=68.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|++++..... ...+..+.+........++.  .+.+|||||....       ......++  .++|+
T Consensus         6 ~G~~~vGKSsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~-------~~~~~~~~--~~~d~   75 (188)
T cd04125           6 IGDYGVGKSSLLKRFTEDEFSE-STKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERF-------RSLNNSYY--RGAHG   75 (188)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHH-------HhhHHHHc--cCCCE
Confidence            6999999999999999886421 11111122222233445543  5689999996321       11112222  47899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +++|+++++......-..+++.+....+..  .|+++|+||.|+.
T Consensus        76 iilv~d~~~~~s~~~i~~~~~~i~~~~~~~--~~~ivv~nK~Dl~  118 (188)
T cd04125          76 YLLVYDVTDQESFENLKFWINEINRYAREN--VIKVIVANKSDLV  118 (188)
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECCCCc
Confidence            999988775321122234666666654433  7899999999985

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.34  E-value=8.2e-12  Score=101.70  Aligned_cols=111  Identities=17%  Similarity=0.124  Sum_probs=68.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCC-ccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGP-RPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~-~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (265)
                      +|.+|||||||+|++++...  ...+.++.. .........+|  ..+.+|||||.....       .....+  ..++|
T Consensus         6 vG~~~vGKTsli~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~--~~~ad   74 (170)
T cd04108           6 VGDLSVGKTCLINRFCKDVF--DKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFK-------CIASTY--YRGAQ   74 (170)
T ss_pred             ECCCCCCHHHHHHHHhcCCC--CCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHH-------hhHHHH--hcCCC
Confidence            69999999999999999763  233322222 22223344455  467999999973211       111111  14889


Q ss_pred             EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ++++|+++++.........+++.+.+...+. ..|+++|.||+|+.
T Consensus        75 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~-~~~iilVgnK~Dl~  119 (170)
T cd04108          75 AIIIVFDLTDVASLEHTRQWLEDALKENDPS-SVLLFLVGTKKDLS  119 (170)
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCC-CCeEEEEEEChhcC
Confidence            9999988865322233445666665433221 15789999999985

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04135 Tc10 TC10 subfamily

Probab=99.34  E-value=7.9e-12  Score=101.44  Aligned_cols=109  Identities=19%  Similarity=0.156  Sum_probs=69.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|++.+...  .....++...........++.  .+.+|||||..+.......         .-.++|+
T Consensus         6 ~G~~~~GKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~---------~~~~~~~   74 (174)
T cd04135           6 VGDGAVGKTCLLMSYANDAF--PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPL---------SYPMTDV   74 (174)
T ss_pred             ECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccc---------cCCCCCE
Confidence            69999999999999998763  222222322222233445554  4679999997543221110         1147899


Q ss_pred             EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +++|+++++.+ +......+++.+... ..  ..|+++|+||+|+.
T Consensus        75 ~ilv~~~~~~~s~~~~~~~~~~~l~~~-~~--~~piivv~nK~Dl~  117 (174)
T cd04135          75 FLICFSVVNPASFQNVKEEWVPELKEY-AP--NVPYLLVGTQIDLR  117 (174)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhh-CC--CCCEEEEeEchhhh
Confidence            99998877533 333334556666544 22  38999999999984

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.33  E-value=9.5e-12  Score=101.75  Aligned_cols=109  Identities=17%  Similarity=0.138  Sum_probs=69.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+.++++...  ...+.++...........++  ..+.+|||||........       ..++  .++|+
T Consensus         7 iG~~~vGKSsli~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------~~~~--~~~d~   75 (174)
T cd01871           7 VGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR-------PLSY--PQTDV   75 (174)
T ss_pred             ECCCCCCHHHHHHHHhcCCC--CCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhh-------hhhc--CCCCE
Confidence            69999999999999998652  23333333222222344555  467899999974322111       1111  47899


Q ss_pred             EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|+|+++++.. +......+++.+.....   ..|+++|.||+|+.
T Consensus        76 ~ilv~d~~~~~sf~~~~~~~~~~~~~~~~---~~piilvgnK~Dl~  118 (174)
T cd01871          76 FLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLR  118 (174)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEeeChhhc
Confidence            99999887532 33333346666655432   37999999999984

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04118 Rab24 Rab24 subfamily

Probab=99.33  E-value=9.9e-12  Score=102.88  Aligned_cols=110  Identities=17%  Similarity=0.116  Sum_probs=68.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccE-EEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPV-MVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~-~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (265)
                      +|.+|+|||||+|++++... ..+.+.++..... ......+|.  .+.+|||||.......       ...++  .++|
T Consensus         6 vG~~~vGKSsLi~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~-------~~~~~--~~~d   75 (193)
T cd04118           6 LGKESVGKTSLVERYVHHRF-LVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAM-------SRIYY--RGAK   75 (193)
T ss_pred             ECCCCCCHHHHHHHHHhCCc-CCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhh-------hHhhc--CCCC
Confidence            69999999999999998764 2223333322222 224455665  4569999997432111       11111  3789


Q ss_pred             EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ++++|++++.....+....+++.+.....   ..|+++|+||+|+.
T Consensus        76 ~iilv~d~~~~~s~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~  118 (193)
T cd04118          76 AAIVCYDLTDSSSFERAKFWVKELQNLEE---HCKIYLCGTKSDLI  118 (193)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHhcCC---CCCEEEEEEccccc
Confidence            99999887642211222356666655322   27999999999985

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04133 Rop_like Rop subfamily

Probab=99.33  E-value=1.4e-11  Score=101.16  Aligned_cols=109  Identities=18%  Similarity=0.147  Sum_probs=72.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||++.+.....  ...+.++...........++.  ++.+|||+|..+......       .++  .++|+
T Consensus         7 ~G~~~vGKTsli~~~~~~~f--~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~-------~~~--~~a~~   75 (176)
T cd04133           7 VGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRP-------LSY--RGADV   75 (176)
T ss_pred             ECCCCCcHHHHHHHHhcCCC--CCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccch-------hhc--CCCcE
Confidence            69999999999999998763  333333332223333445554  578999999854332211       111  48899


Q ss_pred             EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|+|+++++.. |......++..+.+..+ +  .|+++|.||+|+.
T Consensus        76 ~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~-~--~piilvgnK~Dl~  118 (176)
T cd04133          76 FVLAFSLISRASYENVLKKWVPELRHYAP-N--VPIVLVGTKLDLR  118 (176)
T ss_pred             EEEEEEcCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEeChhhc
Confidence            99999988644 43333567777766543 2  7999999999995

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04131 Rnd Rnd subfamily

Probab=99.33  E-value=8.4e-12  Score=102.55  Aligned_cols=109  Identities=16%  Similarity=0.111  Sum_probs=70.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||++++.+...  ...+.++..........+++.  .+.+|||+|.....        .+... .-+++|+
T Consensus         7 vG~~~vGKTsli~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~--------~~~~~-~~~~a~~   75 (178)
T cd04131           7 VGDVQCGKTALLQVFAKDCY--PETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYD--------NVRPL-CYPDSDA   75 (178)
T ss_pred             ECCCCCCHHHHHHHHHhCcC--CCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhh--------hcchh-hcCCCCE
Confidence            69999999999999998752  233333322222233445554  57899999963221        11111 1248899


Q ss_pred             EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|+|+++++.. +......+++.+.+..+ .  .|+++|.||+|+.
T Consensus        76 ~ilvfdit~~~Sf~~~~~~w~~~i~~~~~-~--~~iilVgnK~DL~  118 (178)
T cd04131          76 VLICFDISRPETLDSVLKKWRGEIQEFCP-N--TKVLLVGCKTDLR  118 (178)
T ss_pred             EEEEEECCChhhHHHHHHHHHHHHHHHCC-C--CCEEEEEEChhhh
Confidence            99999887633 33323467777776543 2  7999999999984

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04149 Arf6 Arf6 subfamily

Probab=99.33  E-value=9.7e-12  Score=101.06  Aligned_cols=108  Identities=15%  Similarity=0.152  Sum_probs=64.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+|||||||+++|.....  .. ..++ ...........+..+.+|||||....       ......++  .++|+++
T Consensus        15 ~G~~~~GKTsli~~l~~~~~--~~-~~~t-~g~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~--~~a~~ii   81 (168)
T cd04149          15 LGLDAAGKTTILYKLKLGQS--VT-TIPT-VGFNVETVTYKNVKFNVWDVGGQDKI-------RPLWRHYY--TGTQGLI   81 (168)
T ss_pred             ECcCCCCHHHHHHHHccCCC--cc-ccCC-cccceEEEEECCEEEEEEECCCCHHH-------HHHHHHHh--ccCCEEE
Confidence            69999999999999987553  22 2222 22222344456788999999997321       11112222  3789999


Q ss_pred             EEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           81 YVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ||+++++.. +......+.+.+.....+  ..|+++|+||+|+.
T Consensus        82 ~v~D~t~~~s~~~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~  123 (168)
T cd04149          82 FVVDSADRDRIDEARQELHRIINDREMR--DALLLVFANKQDLP  123 (168)
T ss_pred             EEEeCCchhhHHHHHHHHHHHhcCHhhc--CCcEEEEEECcCCc
Confidence            998776532 322222222222221111  27999999999984

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.33  E-value=8.5e-12  Score=107.93  Aligned_cols=117  Identities=21%  Similarity=0.263  Sum_probs=84.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH-----hcCC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL-----LNKT   75 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l-----~~~~   75 (265)
                      ||.+++|||||.|.++|.+++.++....+|++.......-+..++.++||||+......-...+.  ...+     ....
T Consensus        78 IG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~--~s~lq~~~~a~q~  155 (379)
T KOG1423|consen   78 IGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLM--MSVLQNPRDAAQN  155 (379)
T ss_pred             EcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHH--HHhhhCHHHHHhh
Confidence            69999999999999999999999998888888888888888899999999999876543322111  1111     1247


Q ss_pred             ccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           76 IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        76 ~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      +|++++|+++.++| +...-..+..+.+.-    ..|.++|+||.|...
T Consensus       156 AD~vvVv~Das~tr-~~l~p~vl~~l~~ys----~ips~lvmnkid~~k  199 (379)
T KOG1423|consen  156 ADCVVVVVDASATR-TPLHPRVLHMLEEYS----KIPSILVMNKIDKLK  199 (379)
T ss_pred             CCEEEEEEeccCCc-CccChHHHHHHHHHh----cCCceeeccchhcch
Confidence            89999997777544 122233444444432    178999999999853

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.33  E-value=5.6e-12  Score=103.79  Aligned_cols=109  Identities=19%  Similarity=0.225  Sum_probs=66.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeC-C--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA-G--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~-g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (265)
                      +|.+|+|||||+|++++...  .....+++........... +  ..+.+|||||..+.        ..+... ...++|
T Consensus         6 vG~~~vGKTsli~~l~~~~~--~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~--------~~~~~~-~~~~ad   74 (187)
T cd04132           6 VGDGGCGKTCLLIVYSQGKF--PEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEY--------DRLRPL-SYPDVD   74 (187)
T ss_pred             ECCCCCCHHHHHHHHHhCcC--CCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhH--------HHHHHH-hCCCCC
Confidence            69999999999999998763  2222222222222223332 3  46799999996321        111111 124889


Q ss_pred             EEEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           78 VLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        78 ~iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ++++|+++++.. +......++..+.... +  ..|+++|+||.|+.
T Consensus        75 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~--~~piilv~nK~Dl~  118 (187)
T cd04132          75 VLLICYAVDNPTSLDNVEDKWFPEVNHFC-P--GTPIMLVGLKTDLR  118 (187)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhC-C--CCCEEEEEeChhhh
Confidence            999998877532 3222234555554432 2  27999999999984

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.33  E-value=2.5e-11  Score=99.04  Aligned_cols=108  Identities=11%  Similarity=0.036  Sum_probs=65.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+|+|||||++.|.+......    ..|.........+++..+.++||||....       ......++  .++|+++
T Consensus        21 ~G~~~~GKTsl~~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~l~D~~G~~~~-------~~~~~~~~--~~~d~vi   87 (174)
T cd04153          21 VGLDNAGKTTILYQFLLGEVVHT----SPTIGSNVEEIVYKNIRFLMWDIGGQESL-------RSSWNTYY--TNTDAVI   87 (174)
T ss_pred             ECCCCCCHHHHHHHHccCCCCCc----CCccccceEEEEECCeEEEEEECCCCHHH-------HHHHHHHh--hcCCEEE
Confidence            59999999999999987654222    12333333456667889999999997321       11112222  3889999


Q ss_pred             EEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           81 YVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|++.+... +... ...+..+.+.-+ ....|+++|+||+|+.
T Consensus        88 ~V~D~s~~~~~~~~-~~~l~~~~~~~~-~~~~p~viv~NK~Dl~  129 (174)
T cd04153          88 LVIDSTDRERLPLT-KEELYKMLAHED-LRKAVLLVLANKQDLK  129 (174)
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHhchh-hcCCCEEEEEECCCCC
Confidence            997765421 2111 222222222111 1137999999999984

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.33  E-value=1.8e-11  Score=97.90  Aligned_cols=108  Identities=18%  Similarity=0.131  Sum_probs=63.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR-AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVL   79 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~-~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~i   79 (265)
                      +|.+|||||||+|++.+.......    .|.......... .+..+.+|||||....       ......++  ..+|++
T Consensus         5 ~G~~~~GKTsl~~~~~~~~~~~~~----~t~~~~~~~~~~~~~~~l~i~D~~G~~~~-------~~~~~~~~--~~~~~i   71 (160)
T cd04156           5 LGLDSAGKSTLLYKLKHAELVTTI----PTVGFNVEMLQLEKHLSLTVWDVGGQEKM-------RTVWKCYL--ENTDGL   71 (160)
T ss_pred             EcCCCCCHHHHHHHHhcCCccccc----CccCcceEEEEeCCceEEEEEECCCCHhH-------HHHHHHHh--ccCCEE
Confidence            699999999999999998753221    122111222223 3468999999997321       11122222  378999


Q ss_pred             EEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           80 LYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        80 L~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ++|++.+... +.... ..+..+.+... ....|+++|+||+|+.
T Consensus        72 v~v~D~~~~~~~~~~~-~~~~~~~~~~~-~~~~piilv~nK~Dl~  114 (160)
T cd04156          72 VYVVDSSDEARLDESQ-KELKHILKNEH-IKGVPVVLLANKQDLP  114 (160)
T ss_pred             EEEEECCcHHHHHHHH-HHHHHHHhchh-hcCCCEEEEEECcccc
Confidence            9997765421 22222 22332222111 0238999999999984

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.33  E-value=8.3e-12  Score=101.15  Aligned_cols=108  Identities=12%  Similarity=0.090  Sum_probs=67.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEE--eee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVS--RSR--AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI   76 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~--~~~--~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~   76 (265)
                      +|.+|||||||+|+++....  ..... .|.......  ...  ....+.+|||||..........       ++  .++
T Consensus         6 vG~~~vGKTsli~~~~~~~~--~~~~~-~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~-------~~--~~~   73 (166)
T cd00877           6 VGDGGTGKTTFVKRHLTGEF--EKKYV-ATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDG-------YY--IGG   73 (166)
T ss_pred             ECCCCCCHHHHHHHHHhCCC--CCCCC-CceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHH-------Hh--cCC
Confidence            69999999999999996652  11111 222212212  222  3357899999998543322211       11  378


Q ss_pred             cEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           77 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        77 d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      |++++|++++.......-..+++.+.+..+   ..|+++|+||+|+.
T Consensus        74 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piiiv~nK~Dl~  117 (166)
T cd00877          74 QCAIIMFDVTSRVTYKNVPNWHRDLVRVCG---NIPIVLCGNKVDIK  117 (166)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhcc
Confidence            999999887753211222356667766554   38999999999984

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.33  E-value=9.4e-12  Score=111.03  Aligned_cols=118  Identities=19%  Similarity=0.240  Sum_probs=79.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccC------CCCCCCccE--EEEeeeCCe--EEEEEeCCCCCCCCCC---cHHHHH--
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVST------FQSEGPRPV--MVSRSRAGF--TLNIVDTPGLIEGGYV---NYHAIQ--   65 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~------~~~~t~~~~--~~~~~~~g~--~v~iiDTPG~~~~~~~---~~~~~~--   65 (265)
                      +|.+|.|||||||+|++........      -...|....  ....+-+|.  +++|+||||++|.-..   .+-..+  
T Consensus        27 vG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~pi~~yi  106 (366)
T KOG2655|consen   27 VGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWRPIVNYI  106 (366)
T ss_pred             ecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccchhhhHHH
Confidence            6999999999999999985321100      111122222  223344565  5699999999985221   111111  


Q ss_pred             --HHHHHHh-----------cCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           66 --LIKRFLL-----------NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        66 --~i~~~l~-----------~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                        ....+++           +..+|++||.++..+..+.+.|..+++.+...      .++|-|+.|+|...
T Consensus       107 ~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~~------vNiIPVI~KaD~lT  172 (366)
T KOG2655|consen  107 DSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSKK------VNLIPVIAKADTLT  172 (366)
T ss_pred             HHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhcc------ccccceeeccccCC
Confidence              1222331           24789999998888877999999999999887      68999999999853

>cd04151 Arl1 Arl1 subfamily

Probab=99.33  E-value=1.2e-11  Score=98.95  Aligned_cols=108  Identities=10%  Similarity=0.111  Sum_probs=65.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+|+|||||+|+|......  .. . .|...........+..+.+|||||..+.       ......++  .++|+++
T Consensus         5 vG~~~~GKTsl~~~l~~~~~~--~~-~-~t~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~--~~~~~ii   71 (158)
T cd04151           5 LGLDNAGKTTILYRLQLGEVV--TT-I-PTIGFNVETVTYKNLKFQVWDLGGQTSI-------RPYWRCYY--SNTDAII   71 (158)
T ss_pred             ECCCCCCHHHHHHHHccCCCc--Cc-C-CccCcCeEEEEECCEEEEEEECCCCHHH-------HHHHHHHh--cCCCEEE
Confidence            699999999999999876532  21 1 2222223345567789999999998421       11112222  3789999


Q ss_pred             EEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           81 YVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|++.+... +......+...+.....  ..+|+++|+||+|+.
T Consensus        72 ~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~piiiv~nK~Dl~  113 (158)
T cd04151          72 YVVDSTDRDRLGTAKEELHAMLEEEEL--KGAVLLVFANKQDMP  113 (158)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhchhh--cCCcEEEEEeCCCCC
Confidence            997766421 22222223222322111  138999999999984

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.32  E-value=2.8e-12  Score=97.76  Aligned_cols=111  Identities=15%  Similarity=0.097  Sum_probs=62.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccc---cCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTV---STFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~---~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (265)
                      +|.+|||||||+++|++......   ......+..........+...+.++|++|...........   +.      .+|
T Consensus         5 ~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~---~~------~~d   75 (119)
T PF08477_consen    5 LGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFF---LK------KAD   75 (119)
T ss_dssp             ECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHH---HH------HSC
T ss_pred             ECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccch---hh------cCc
Confidence            59999999999999998875311   1111112111122222334458899999984332222211   23      679


Q ss_pred             EEEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCcc
Q 024586           78 VLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQ  121 (265)
Q Consensus        78 ~iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D  121 (265)
                      ++++|+++++.. +.. -.++++.+....+.....|+++|.||.|
T Consensus        76 ~~ilv~D~s~~~s~~~-~~~~~~~l~~~~~~~~~~piilv~nK~D  119 (119)
T PF08477_consen   76 AVILVYDLSDPESLEY-LSQLLKWLKNIRKRDKNIPIILVGNKSD  119 (119)
T ss_dssp             EEEEEEECCGHHHHHH-HHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred             EEEEEEcCCChHHHHH-HHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence            999998877532 211 1233344444432222389999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.32  E-value=4.2e-11  Score=94.67  Aligned_cols=110  Identities=16%  Similarity=0.149  Sum_probs=64.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+|+|||||+|+|.+.+.  .....+ |..........++..+.+|||||...       .......++  ..+|+++
T Consensus         5 ~G~~~~GKssl~~~l~~~~~--~~~~~~-t~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~--~~~d~ii   72 (159)
T cd04159           5 VGLQNSGKTTLVNVIAGGQF--SEDTIP-TVGFNMRKVTKGNVTLKVWDLGGQPR-------FRSMWERYC--RGVNAIV   72 (159)
T ss_pred             EcCCCCCHHHHHHHHccCCC--CcCccC-CCCcceEEEEECCEEEEEEECCCCHh-------HHHHHHHHH--hcCCEEE
Confidence            69999999999999999863  222222 22222234455678899999999732       222223333  3789999


Q ss_pred             EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|++++...........+..+..... ....|+++|+||+|+.
T Consensus        73 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~  114 (159)
T cd04159          73 YVVDAADRTALEAAKNELHDLLEKPS-LEGIPLLVLGNKNDLP  114 (159)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHcChh-hcCCCEEEEEeCcccc
Confidence            99766532111111122222222111 1237899999999984

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd04127 Rab27A Rab27a subfamily

Probab=99.32  E-value=5.1e-11  Score=97.30  Aligned_cols=112  Identities=17%  Similarity=0.083  Sum_probs=65.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCC-CCccEEEEeee------------CCeEEEEEeCCCCCCCCCCcHHHHHHH
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMVSRSR------------AGFTLNIVDTPGLIEGGYVNYHAIQLI   67 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~-t~~~~~~~~~~------------~g~~v~iiDTPG~~~~~~~~~~~~~~i   67 (265)
                      +|.+|||||||+|++.+...  .....++ +.........+            ....+.+|||||..       ......
T Consensus        10 vG~~~vGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-------~~~~~~   80 (180)
T cd04127          10 LGDSGVGKTSFLYQYTDNKF--NPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQE-------RFRSLT   80 (180)
T ss_pred             ECCCCCCHHHHHHHHhcCCC--CccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChH-------HHHHHH
Confidence            69999999999999998753  2222211 11111111222            23578999999952       222222


Q ss_pred             HHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           68 KRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        68 ~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      ..++  .++|++++|++++.......-..++..+...... ...|+++|+||+|+.+
T Consensus        81 ~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piiiv~nK~Dl~~  134 (180)
T cd04127          81 TAFF--RDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYC-ENPDIVLCGNKADLED  134 (180)
T ss_pred             HHHh--CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEeCccchh
Confidence            2222  4789999998877532112223455555543211 1268999999999954

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.32  E-value=2.3e-11  Score=98.70  Aligned_cols=113  Identities=11%  Similarity=0.100  Sum_probs=67.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCC-CCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~-t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (265)
                      +|.+|+|||||++++++... . ....++ +.........+.+  ..+.+|||||..+..   .   .....++  ..+|
T Consensus         8 vG~~~vGKTsli~~~~~~~~-~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---~---~~~~~~~--~~~d   77 (170)
T cd04115           8 IGDSNVGKTCLTYRFCAGRF-P-ERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFR---K---SMVQHYY--RNVH   77 (170)
T ss_pred             ECCCCCCHHHHHHHHHhCCC-C-CccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHH---H---hhHHHhh--cCCC
Confidence            69999999999999998653 1 111111 1112222344555  568999999963211   0   1122222  4789


Q ss_pred             EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      ++++|++++.......-..+++.+..... ....|+++|+||+|+..
T Consensus        78 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~  123 (170)
T cd04115          78 AVVFVYDVTNMASFHSLPSWIEECEQHSL-PNEVPRILVGNKCDLRE  123 (170)
T ss_pred             EEEEEEECCCHHHHHhHHHHHHHHHHhcC-CCCCCEEEEEECccchh
Confidence            99999888753322233445555554432 12379999999999853

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.32  E-value=3.3e-11  Score=96.36  Aligned_cols=112  Identities=19%  Similarity=0.190  Sum_probs=68.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|++++...  .....+++..........++  ..+.+|||||..+..       .....++  ...|+
T Consensus         6 ~G~~~~GKTsl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~--~~~~~   74 (164)
T cd04139           6 VGAGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYA-------AIRDNYH--RSGEG   74 (164)
T ss_pred             ECCCCCCHHHHHHHHHhCCC--ccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhh-------HHHHHHh--hcCCE
Confidence            69999999999999998763  23333444333333344444  467999999974321       1112222  36789


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      +++|++++.......-..++..+..... ....|+++|+||+|+..
T Consensus        75 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~D~~~  119 (164)
T cd04139          75 FLLVFSITDMESFTATAEFREQILRVKD-DDNVPLLLVGNKCDLED  119 (164)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEcccccc
Confidence            9999777643211122344455554422 12389999999999853

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>PLN03110 Rab GTPase; Provisional

Probab=99.32  E-value=4.5e-11  Score=101.19  Aligned_cols=113  Identities=15%  Similarity=0.145  Sum_probs=70.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+++|++..... ...+..+.........+++  ..+.+|||||...       .......++  ..+|+
T Consensus        18 vG~~~vGKStLi~~l~~~~~~~-~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~-------~~~~~~~~~--~~~~~   87 (216)
T PLN03110         18 IGDSGVGKSNILSRFTRNEFCL-ESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER-------YRAITSAYY--RGAVG   87 (216)
T ss_pred             ECCCCCCHHHHHHHHhcCCCCC-CCCCceeEEEEEEEEEECCEEEEEEEEECCCcHH-------HHHHHHHHh--CCCCE
Confidence            6999999999999999876421 1111111222233444555  4678999999621       222222222  47899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP  125 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~  125 (265)
                      +++|++++.....+.-..++..+......+  .|+++|+||+|+...
T Consensus        88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~piiiv~nK~Dl~~~  132 (216)
T PLN03110         88 ALLVYDITKRQTFDNVQRWLRELRDHADSN--IVIMMAGNKSDLNHL  132 (216)
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHhCCCC--CeEEEEEEChhcccc
Confidence            999988765332233345666666654433  789999999998533

>cd04121 Rab40 Rab40 subfamily

Probab=99.31  E-value=1.8e-11  Score=101.56  Aligned_cols=109  Identities=16%  Similarity=0.207  Sum_probs=71.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCC-CCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~-t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (265)
                      +|..|||||||++++.+...  ...+.++ +..........++  ..+.+|||||.....       .....+.  .++|
T Consensus        12 iG~~~vGKTsll~~~~~~~~--~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~-------~l~~~~~--~~ad   80 (189)
T cd04121          12 VGDSDVGKGEILASLQDGST--ESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFC-------TIFRSYS--RGAQ   80 (189)
T ss_pred             ECCCCCCHHHHHHHHHcCCC--CCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHH-------HHHHHHh--cCCC
Confidence            69999999999999998652  2222222 2222233445566  467899999984221       1122222  4889


Q ss_pred             EEEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           78 VLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        78 ~iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      ++|+|++++... ++.. ..+++.+.+...   ..|+++|.||.|+..
T Consensus        81 ~illVfD~t~~~Sf~~~-~~w~~~i~~~~~---~~piilVGNK~DL~~  124 (189)
T cd04121          81 GIILVYDITNRWSFDGI-DRWIKEIDEHAP---GVPKILVGNRLHLAF  124 (189)
T ss_pred             EEEEEEECcCHHHHHHH-HHHHHHHHHhCC---CCCEEEEEECccchh
Confidence            999999888644 4443 567778866543   279999999999953

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.31  E-value=1.4e-11  Score=100.00  Aligned_cols=109  Identities=16%  Similarity=0.150  Sum_probs=68.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||++++.+...  .....++..........+++.  .+.+|||||..+......       .  ...++|+
T Consensus         7 iG~~~~GKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-------~--~~~~~d~   75 (175)
T cd01870           7 VGDGACGKTCLLIVFSKDQF--PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRP-------L--SYPDTDV   75 (175)
T ss_pred             ECCCCCCHHHHHHHHhcCCC--CCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccc-------c--ccCCCCE
Confidence            69999999999999998763  222222322222234445554  578999999743221111       1  1147899


Q ss_pred             EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +++|+++++.. +......++..+.+...   ..|+++|+||+|+.
T Consensus        76 ~i~v~~~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~  118 (175)
T cd01870          76 ILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLR  118 (175)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEeeChhcc
Confidence            99998887532 23333345555554332   27999999999985

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.31  E-value=1.5e-11  Score=102.51  Aligned_cols=112  Identities=18%  Similarity=0.162  Sum_probs=69.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|++++...  ...+.+++.........+++  ..+.+|||||..+...    ..   ..++  ..+|+
T Consensus         5 vG~~~vGKTsll~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~----~~---~~~~--~~ad~   73 (198)
T cd04147           5 MGAAGVGKTALIQRFLYDTF--EPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPA----MR---KLSI--QNSDA   73 (198)
T ss_pred             ECCCCCCHHHHHHHHHhCCC--CccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhH----HH---HHHh--hcCCE
Confidence            69999999999999998763  23333333333334455666  4678999999743211    11   1111  37899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      +++|++++...-......++..+.+.... ...|+++|+||+|+.+
T Consensus        74 vilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~  118 (198)
T cd04147          74 FALVYAVDDPESFEEVERLREEILEVKED-KFVPIVVVGNKADSLE  118 (198)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEcccccc
Confidence            99998776422112223444555554331 2389999999999853

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.31  E-value=3.5e-11  Score=96.77  Aligned_cols=108  Identities=11%  Similarity=0.149  Sum_probs=65.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+|||||||++++.....  .+ ..++ ..............+.+|||||...       .......++  .++|+++
T Consensus         6 ~G~~~~GKTsli~~l~~~~~--~~-~~pt-~g~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~--~~ad~~i   72 (159)
T cd04150           6 VGLDAAGKTTILYKLKLGEI--VT-TIPT-IGFNVETVEYKNISFTVWDVGGQDK-------IRPLWRHYF--QNTQGLI   72 (159)
T ss_pred             ECCCCCCHHHHHHHHhcCCC--cc-cCCC-CCcceEEEEECCEEEEEEECCCCHh-------HHHHHHHHh--cCCCEEE
Confidence            69999999999999976543  22 2222 2222233455678899999999732       111222222  4889999


Q ss_pred             EEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           81 YVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ||++.+... ++.....+.+.+......  ..|+++|+||.|+.
T Consensus        73 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~  114 (159)
T cd04150          73 FVVDSNDRERIGEAREELQRMLNEDELR--DAVLLVFANKQDLP  114 (159)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhcHHhc--CCCEEEEEECCCCC
Confidence            998776422 333322222222221111  27999999999984

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd01863 Rab18 Rab18 subfamily

Probab=99.30  E-value=1.6e-11  Score=98.23  Aligned_cols=112  Identities=15%  Similarity=0.066  Sum_probs=66.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|+|++...... ..+..+.+.......+++  ..+.+|||||.....       .....++  +.+|+
T Consensus         6 ~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~--~~~d~   75 (161)
T cd01863           6 IGDSGVGKSSLLLRFTDDTFDPD-LAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFR-------TLTSSYY--RGAQG   75 (161)
T ss_pred             ECCCCCCHHHHHHHHHcCCCCcc-cCCcccceEEEEEEEECCEEEEEEEEECCCchhhh-------hhhHHHh--CCCCE
Confidence            69999999999999998764221 111111222222233444  568999999963221       1112222  47899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +++|+++++......-..++..+.+... ....|+++|+||+|+.
T Consensus        76 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~~~iv~nK~D~~  119 (161)
T cd01863          76 VILVYDVTRRDTFTNLETWLNELETYST-NNDIVKMLVGNKIDKE  119 (161)
T ss_pred             EEEEEECCCHHHHHhHHHHHHHHHHhCC-CCCCcEEEEEECCccc
Confidence            9999887642211222335555555433 2237899999999985

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.30  E-value=2.7e-11  Score=98.98  Aligned_cols=112  Identities=21%  Similarity=0.220  Sum_probs=68.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|++++...  .....+++..........++  ..+.+|||||..+.....       ..++  ...|+
T Consensus         7 ~G~~g~GKTtl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~-------~~~~--~~~~~   75 (180)
T cd04137           7 LGSRSVGKSSLTVQFVEGHF--VESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILP-------QKYS--IGIHG   75 (180)
T ss_pred             ECCCCCCHHHHHHHHHhCCC--ccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHH-------HHHH--hhCCE
Confidence            69999999999999998763  23233343333333444544  457899999974322111       1111  36799


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      +++|++.+....-.....++..+.+..+. ...|+++|.||+|+..
T Consensus        76 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~p~ilv~NK~Dl~~  120 (180)
T cd04137          76 YILVYSVTSRKSFEVVKVIYDKILDMLGK-ESVPIVLVGNKSDLHT  120 (180)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEEchhhhh
Confidence            99998777532112223444455444332 2368999999999853

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd00879 Sar1 Sar1 subfamily

Probab=99.30  E-value=2.8e-11  Score=99.88  Aligned_cols=108  Identities=14%  Similarity=0.186  Sum_probs=67.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+|||||||+|+|.+.....   . ..|..+......+++.++.++||||...       .......++  .++|+++
T Consensus        25 lG~~~~GKStLi~~l~~~~~~~---~-~~T~~~~~~~i~~~~~~~~l~D~~G~~~-------~~~~~~~~~--~~ad~ii   91 (190)
T cd00879          25 LGLDNAGKTTLLHMLKDDRLAQ---H-VPTLHPTSEELTIGNIKFKTFDLGGHEQ-------ARRLWKDYF--PEVDGIV   91 (190)
T ss_pred             ECCCCCCHHHHHHHHhcCCCcc---c-CCccCcceEEEEECCEEEEEEECCCCHH-------HHHHHHHHh--ccCCEEE
Confidence            6999999999999999876421   1 1234444556677889999999999632       111222222  4789999


Q ss_pred             EEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           81 YVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|++..+.. +.. ....+..+.+.. .....|+++|+||+|+.
T Consensus        92 lV~D~~~~~s~~~-~~~~~~~i~~~~-~~~~~pvivv~NK~Dl~  133 (190)
T cd00879          92 FLVDAADPERFQE-SKEELDSLLSDE-ELANVPFLILGNKIDLP  133 (190)
T ss_pred             EEEECCcHHHHHH-HHHHHHHHHcCc-cccCCCEEEEEeCCCCC
Confidence            997665321 221 222333332211 11237999999999984

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.30  E-value=3.4e-11  Score=94.60  Aligned_cols=111  Identities=19%  Similarity=0.292  Sum_probs=66.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|+|++.. +..+..+..+..........++  ..+.+|||||..+.....       ..+.  ..++.
T Consensus         7 ~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~-------~~~~--~~~~~   76 (161)
T TIGR00231         7 VGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIR-------RLYY--RAVES   76 (161)
T ss_pred             ECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHH-------HHHH--hhhhE
Confidence            6999999999999999987 4555444455555544466777  678999999964322111       1111  13455


Q ss_pred             EEEEEecCCc--CCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVY--RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~--r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ++++.++...  .+..........+......  ..|+++|+||+|+.
T Consensus        77 ~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~  121 (161)
T TIGR00231        77 SLRVFDIVILVLDVEEILEKQTKEIIHHAES--NVPIILVGNKIDLR  121 (161)
T ss_pred             EEEEEEEeeeehhhhhHhHHHHHHHHHhccc--CCcEEEEEEcccCC
Confidence            5555433221  1122222344444443322  37999999999985

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.30  E-value=2.3e-11  Score=99.49  Aligned_cols=107  Identities=11%  Similarity=0.120  Sum_probs=64.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+|||||||++.+.....  .. ..+ |...........+..+.+|||||....       ......++  .++|+++
T Consensus        19 ~G~~~~GKTsL~~~~~~~~~--~~-~~~-t~~~~~~~~~~~~~~l~l~D~~G~~~~-------~~~~~~~~--~~ad~ii   85 (175)
T smart00177       19 VGLDAAGKTTILYKLKLGES--VT-TIP-TIGFNVETVTYKNISFTVWDVGGQDKI-------RPLWRHYY--TNTQGLI   85 (175)
T ss_pred             EcCCCCCHHHHHHHHhcCCC--CC-cCC-ccccceEEEEECCEEEEEEECCCChhh-------HHHHHHHh--CCCCEEE
Confidence            69999999999999975442  12 222 222222344567788999999997321       11222222  4889999


Q ss_pred             EEEecCCcC-CCHHHHHHHHHH-HHhcCcCcCCcEEEEEeCccCC
Q 024586           81 YVDRLDVYR-VDNLDKQITRAI-TDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~~r-~~~~d~~~l~~l-~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|+++++.. +... .+.+..+ ......  ..|+++|+||+|+.
T Consensus        86 ~v~D~t~~~s~~~~-~~~l~~~~~~~~~~--~~piilv~NK~Dl~  127 (175)
T smart00177       86 FVVDSNDRDRIDEA-REELHRMLNEDELR--DAVILVFANKQDLP  127 (175)
T ss_pred             EEEECCCHHHHHHH-HHHHHHHhhCHhhc--CCcEEEEEeCcCcc
Confidence            998776422 3222 2233222 221112  27899999999984

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.30  E-value=2.1e-11  Score=100.44  Aligned_cols=108  Identities=11%  Similarity=0.131  Sum_probs=64.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+|||||||++.+.....  .. ..+ |...........+..+.+|||||....       ......++  .++|+++
T Consensus        23 vG~~~vGKTsli~~~~~~~~--~~-~~~-T~~~~~~~~~~~~~~~~l~D~~G~~~~-------~~~~~~~~--~~ad~iI   89 (182)
T PTZ00133         23 VGLDAAGKTTILYKLKLGEV--VT-TIP-TIGFNVETVEYKNLKFTMWDVGGQDKL-------RPLWRHYY--QNTNGLI   89 (182)
T ss_pred             EcCCCCCHHHHHHHHhcCCc--cc-cCC-ccccceEEEEECCEEEEEEECCCCHhH-------HHHHHHHh--cCCCEEE
Confidence            69999999999999975543  12 222 222223345567889999999997321       11112222  4889999


Q ss_pred             EEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           81 YVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|++.++.. ++.....+.+.+.....  ...|+++|+||.|+.
T Consensus        90 ~v~D~t~~~s~~~~~~~l~~~~~~~~~--~~~piilv~NK~Dl~  131 (182)
T PTZ00133         90 FVVDSNDRERIGDAREELERMLSEDEL--RDAVLLVFANKQDLP  131 (182)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhCHhh--cCCCEEEEEeCCCCC
Confidence            998776422 33332222222222111  137899999999983

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.30  E-value=1.6e-11  Score=101.27  Aligned_cols=109  Identities=15%  Similarity=0.117  Sum_probs=71.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||++.+.+...  ...+.++..........+++.  .+.+|||+|....        ..+... .-.++|+
T Consensus        11 vGd~~vGKTsli~~~~~~~f--~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~--------~~~~~~-~~~~ad~   79 (182)
T cd04172          11 VGDSQCGKTALLHVFAKDCF--PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY--------DNVRPL-SYPDSDA   79 (182)
T ss_pred             ECCCCCCHHHHHHHHHhCCC--CCccCCceeeeeEEEEEECCEEEEEEEEECCCchhh--------Hhhhhh-hcCCCCE
Confidence            69999999999999998763  233333332222333445554  5789999997322        112211 1248899


Q ss_pred             EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +++|++++... +......+++.+.+... .  .|+++|+||+|+.
T Consensus        80 ~ilvyDit~~~Sf~~~~~~w~~~i~~~~~-~--~piilVgNK~DL~  122 (182)
T cd04172          80 VLICFDISRPETLDSVLKKWKGEIQEFCP-N--TKMLLVGCKSDLR  122 (182)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHHCC-C--CCEEEEeEChhhh
Confidence            99999887633 33323467777776543 2  7999999999984

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.30  E-value=2.1e-11  Score=94.68  Aligned_cols=111  Identities=17%  Similarity=0.137  Sum_probs=64.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR--AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~--~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|+|.+.... ......+...........  .+..+.++||||..+.....       ..  ..+.+|+
T Consensus         2 iG~~~~GKStl~~~l~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~-------~~--~~~~~~~   71 (157)
T cd00882           2 VGDSGVGKTSLLNRLLGGEFV-PEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLR-------RL--YYRGADG   71 (157)
T ss_pred             CCcCCCcHHHHHHHHHhCCcC-CcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHH-------HH--HhcCCCE
Confidence            699999999999999998742 122222222222222222  26688999999985432111       11  1147899


Q ss_pred             EEEEEecCCcCCCHHHHHHH--HHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQIT--RAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l--~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      +++|++++... ...+....  ..+...  .....|+++|+||+|+..
T Consensus        72 ~i~v~d~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~ivv~nk~D~~~  116 (157)
T cd00882          72 IILVYDVTDRE-SFENVKEWLLLILINK--EGENIPIILVGNKIDLPE  116 (157)
T ss_pred             EEEEEECcCHH-HHHHHHHHHHHHHHhh--ccCCCcEEEEEecccccc
Confidence            99997766421 11111111  111222  223489999999999854

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.29  E-value=3.2e-11  Score=99.33  Aligned_cols=110  Identities=18%  Similarity=0.193  Sum_probs=64.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEee---eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS---RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~---~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (265)
                      +|.+|||||||+|++.+...  ....+..+.........   ..+..+.+|||||....       ......++  .++|
T Consensus         9 vG~~~~GKTsli~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-------~~~~~~~~--~~~d   77 (183)
T cd04152           9 LGLDSAGKTTVLYRLKFNEF--VNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKL-------RPLWKSYT--RCTD   77 (183)
T ss_pred             ECCCCCCHHHHHHHHhcCCc--CCcCCccccceeEEEeeccCCCceEEEEEECCCcHhH-------HHHHHHHh--ccCC
Confidence            69999999999999998763  22222112222222222   24578999999997321       11112222  4789


Q ss_pred             EEEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           78 VLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        78 ~iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ++++|++.++.. +.. -...+..+.+... ....|+++|+||+|+.
T Consensus        78 ~ii~v~D~~~~~~~~~-~~~~~~~i~~~~~-~~~~p~iiv~NK~D~~  122 (183)
T cd04152          78 GIVFVVDSVDVERMEE-AKTELHKITRFSE-NQGVPVLVLANKQDLP  122 (183)
T ss_pred             EEEEEEECCCHHHHHH-HHHHHHHHHhhhh-cCCCcEEEEEECcCcc
Confidence            999997765421 211 1223333433322 1237999999999984

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.29  E-value=6.7e-11  Score=101.60  Aligned_cols=108  Identities=14%  Similarity=0.128  Sum_probs=70.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCccc-----cc------CC------CCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVT-----VS------TF------QSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA   63 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~-----~~------~~------~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~   63 (265)
                      +|..|+|||||+++|+......     +.      +.      .+.|.........+++.++++|||||..+..   .+.
T Consensus         5 ~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~---~~~   81 (237)
T cd04168           5 LAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFI---AEV   81 (237)
T ss_pred             EcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchH---HHH
Confidence            5999999999999998643211     11      00      0112223344567789999999999996431   122


Q ss_pred             HHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           64 IQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        64 ~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ...+      ..+|++++|++... ........+++.+.+..     .|+++++||+|+.
T Consensus        82 ~~~l------~~aD~~IlVvd~~~-g~~~~~~~~~~~~~~~~-----~P~iivvNK~D~~  129 (237)
T cd04168          82 ERSL------SVLDGAILVISAVE-GVQAQTRILWRLLRKLN-----IPTIIFVNKIDRA  129 (237)
T ss_pred             HHHH------HHhCeEEEEEeCCC-CCCHHHHHHHHHHHHcC-----CCEEEEEECcccc
Confidence            2222      26799999976654 35555666666665532     7899999999984

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.29  E-value=6.8e-11  Score=103.45  Aligned_cols=108  Identities=16%  Similarity=0.141  Sum_probs=73.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCc-----cccc------------CCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH
Q 024586            1 MGKGGVGKSSTVNSIIGEKA-----VTVS------------TFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA   63 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~-----~~~~------------~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~   63 (265)
                      +|.+|+|||||+|+|+....     ..+.            ...+.|........++++.+++++||||..+.       
T Consensus         5 vGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df-------   77 (270)
T cd01886           5 IAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDF-------   77 (270)
T ss_pred             EcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHH-------
Confidence            69999999999999974211     1111            01234444555677788999999999998542       


Q ss_pred             HHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           64 IQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        64 ~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ...+..++  ..+|++++|++... .....+..+++.+.+..     +|+++++||+|+.
T Consensus        78 ~~~~~~~l--~~aD~ailVVDa~~-g~~~~t~~~~~~~~~~~-----~p~ivviNK~D~~  129 (270)
T cd01886          78 TIEVERSL--RVLDGAVAVFDAVA-GVEPQTETVWRQADRYN-----VPRIAFVNKMDRT  129 (270)
T ss_pred             HHHHHHHH--HHcCEEEEEEECCC-CCCHHHHHHHHHHHHcC-----CCEEEEEECCCCC
Confidence            12222222  26799999966543 35666777777766543     7899999999984

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>cd04148 RGK RGK subfamily

Probab=99.28  E-value=4.3e-11  Score=101.71  Aligned_cols=112  Identities=15%  Similarity=0.087  Sum_probs=68.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCC-ccEEEEeeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcC-Cc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGP-RPVMVSRSRA--GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK-TI   76 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~-~~~~~~~~~~--g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~-~~   76 (265)
                      +|.+|||||||++++++.... ...+.++.. ........+.  ...+.+|||||..       ....  ..+  .. ++
T Consensus         6 vG~~gvGKTsLi~~~~~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~-------~~~~--~~~--~~~~a   73 (221)
T cd04148           6 LGSPGVGKSSLASQFTSGEYD-DHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE-------MWTE--DSC--MQYQG   73 (221)
T ss_pred             ECCCCCcHHHHHHHHhcCCcC-ccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc-------hHHH--hHH--hhcCC
Confidence            699999999999999876532 122222211 2223334443  4578999999984       1111  111  13 78


Q ss_pred             cEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCC
Q 024586           77 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP  125 (265)
Q Consensus        77 d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~  125 (265)
                      |++++|+++++......-.+++..+.+... ....|+++|+||+|+.+.
T Consensus        74 d~iilV~d~td~~S~~~~~~~~~~l~~~~~-~~~~piilV~NK~Dl~~~  121 (221)
T cd04148          74 DAFVVVYSVTDRSSFERASELRIQLRRNRQ-LEDRPIILVGNKSDLARS  121 (221)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhcccc
Confidence            999999888763322222455665655421 123899999999998543

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.28  E-value=2.6e-11  Score=103.76  Aligned_cols=109  Identities=17%  Similarity=0.139  Sum_probs=70.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      ||.+|||||||++.+++...  ...+.++..........+++.  .+.||||+|....        ..+... .-.++|+
T Consensus        19 vGd~~VGKTsLi~r~~~~~F--~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~--------~~~~~~-~~~~ad~   87 (232)
T cd04174          19 VGDVQCGKTAMLQVLAKDCY--PETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYY--------DNVRPL-CYSDSDA   87 (232)
T ss_pred             ECCCCCcHHHHHHHHhcCCC--CCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhh--------HHHHHH-HcCCCcE
Confidence            69999999999999998752  233333332223333445554  5789999996321        112211 1148999


Q ss_pred             EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +++|++++... +......|++.+.+... .  .|+++|+||+|+.
T Consensus        88 vIlVyDit~~~Sf~~~~~~w~~~i~~~~~-~--~piilVgNK~DL~  130 (232)
T cd04174          88 VLLCFDISRPETVDSALKKWKAEIMDYCP-S--TRILLIGCKTDLR  130 (232)
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECcccc
Confidence            99999887633 32223467777776543 2  6899999999984

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.27  E-value=7.4e-11  Score=100.31  Aligned_cols=109  Identities=13%  Similarity=0.112  Sum_probs=69.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      ||.+|||||||++.+.+...  ...+.++..........+++.  .+.+|||+|....        ..+... .-+.+|+
T Consensus         7 vGd~~vGKTsLi~~~~~~~f--~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~--------~~l~~~-~~~~~d~   75 (222)
T cd04173           7 VGDAECGKTALLQVFAKDAY--PGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYY--------DNVRPL-AYPDSDA   75 (222)
T ss_pred             ECCCCCCHHHHHHHHHcCCC--CCccCCccccceEEEEEECCEEEEEEEEeCCCcHHH--------HHHhHH-hccCCCE
Confidence            69999999999999998763  233333433333334455554  5688999997321        111111 1258999


Q ss_pred             EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|+|++++... +......+...+.... ++  .|+++|+||+|+.
T Consensus        76 illvfdis~~~Sf~~i~~~w~~~~~~~~-~~--~piiLVgnK~DL~  118 (222)
T cd04173          76 VLICFDISRPETLDSVLKKWQGETQEFC-PN--AKVVLVGCKLDMR  118 (222)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhC-CC--CCEEEEEECcccc
Confidence            99999887633 3333334444444432 22  7999999999984

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd01875 RhoG RhoG subfamily

Probab=99.27  E-value=2.6e-11  Score=100.63  Aligned_cols=109  Identities=17%  Similarity=0.170  Sum_probs=68.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||++.+.....  ...+.++..........+++.  .+.+|||||.....        .+... .-.++|+
T Consensus         9 vG~~~vGKTsli~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~--------~l~~~-~~~~a~~   77 (191)
T cd01875           9 VGDGAVGKTCLLICYTTNAF--PKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYD--------RLRTL-SYPQTNV   77 (191)
T ss_pred             ECCCCCCHHHHHHHHHhCCC--CcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhh--------hhhhh-hccCCCE
Confidence            69999999999999998653  222222222222222345554  57899999984321        12211 1147899


Q ss_pred             EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +++|+++++.. +......+++.+.... +  ..|+++|.||.|+.
T Consensus        78 ~ilvydit~~~Sf~~~~~~w~~~i~~~~-~--~~piilvgNK~DL~  120 (191)
T cd01875          78 FIICFSIASPSSYENVRHKWHPEVCHHC-P--NVPILLVGTKKDLR  120 (191)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhC-C--CCCEEEEEeChhhh
Confidence            99999887633 4333334556565433 2  27999999999984

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.27  E-value=5.2e-11  Score=104.68  Aligned_cols=116  Identities=24%  Similarity=0.310  Sum_probs=87.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeee-CCeEEEEEeCCCCCCCCCC----cHHHHHHHHHHHhcCC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR-AGFTLNIVDTPGLIEGGYV----NYHAIQLIKRFLLNKT   75 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~-~g~~v~iiDTPG~~~~~~~----~~~~~~~i~~~l~~~~   75 (265)
                      ||-+++|||||+|++...+. .+.+++.||..|....... .+..+++-|.||+.++...    ..+.+.+|.+|     
T Consensus       165 VG~PNaGKSTlls~vS~AkP-KIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt-----  238 (369)
T COG0536         165 VGLPNAGKSTLLSAVSAAKP-KIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERT-----  238 (369)
T ss_pred             ccCCCCcHHHHHHHHhhcCC-cccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhh-----
Confidence            68999999999999999886 7889999999998877775 5567999999999987543    35888899866     


Q ss_pred             ccEEEEEEecCCcC--CCHHHHHHHHHHHHhcCcC-cCCcEEEEEeCccCC
Q 024586           76 IDVLLYVDRLDVYR--VDNLDKQITRAITDNFGEQ-IWKRALIVLTHAQLS  123 (265)
Q Consensus        76 ~d~iL~V~~~d~~r--~~~~d~~~l~~l~~~~g~~-~~~~~ivV~tk~D~~  123 (265)
                       .++++|++++...  -..++.+.+..-.+.++.. ..++.++|+||+|+.
T Consensus       239 -~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~  288 (369)
T COG0536         239 -RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLP  288 (369)
T ss_pred             -heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCC
Confidence             7999997776432  1234444443333334332 458999999999963

>cd04155 Arl3 Arl3 subfamily

Probab=99.27  E-value=6.8e-11  Score=95.84  Aligned_cols=108  Identities=15%  Similarity=0.254  Sum_probs=65.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+|+|||||+|+|.+.......    .|..........++..+.++||||...       .......++  .++|+++
T Consensus        20 ~G~~g~GKStLl~~l~~~~~~~~~----~t~g~~~~~i~~~~~~~~~~D~~G~~~-------~~~~~~~~~--~~~~~ii   86 (173)
T cd04155          20 LGLDNAGKTTILKQLASEDISHIT----PTQGFNIKTVQSDGFKLNVWDIGGQRA-------IRPYWRNYF--ENTDCLI   86 (173)
T ss_pred             EccCCCCHHHHHHHHhcCCCcccC----CCCCcceEEEEECCEEEEEEECCCCHH-------HHHHHHHHh--cCCCEEE
Confidence            699999999999999997542221    122222335566788999999999732       112222222  4789999


Q ss_pred             EEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           81 YVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|++..... +......+...+.....  ...|+++++||+|+.
T Consensus        87 ~v~D~~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~  128 (173)
T cd04155          87 YVIDSADKKRLEEAGAELVELLEEEKL--AGVPVLVFANKQDLA  128 (173)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhChhh--cCCCEEEEEECCCCc
Confidence            997665422 22222222222222111  137999999999984

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PRK09866 hypothetical protein; Provisional

Probab=99.27  E-value=1.1e-10  Score=110.74  Aligned_cols=72  Identities=19%  Similarity=0.232  Sum_probs=48.7

Q ss_pred             EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           44 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        44 ~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ++.++||||+......  ...+.+.+.+  ..+|+||||++... ..+..|..+++.+.+.. +.  .|+++|+||+|..
T Consensus       231 QIIFVDTPGIhk~~~~--~L~k~M~eqL--~eADvVLFVVDat~-~~s~~DeeIlk~Lkk~~-K~--~PVILVVNKIDl~  302 (741)
T PRK09866        231 QLTLLDTPGPNEAGQP--HLQKMLNQQL--ARASAVLAVLDYTQ-LKSISDEEVREAILAVG-QS--VPLYVLVNKFDQQ  302 (741)
T ss_pred             CEEEEECCCCCCccch--HHHHHHHHHH--hhCCEEEEEEeCCC-CCChhHHHHHHHHHhcC-CC--CCEEEEEEcccCC
Confidence            4789999999764322  1112222222  37899999965442 26778888888887642 11  4999999999985

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.27  E-value=1.2e-10  Score=95.80  Aligned_cols=106  Identities=12%  Similarity=0.119  Sum_probs=65.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+|||||||++.+.....  .. .. .|..........++..+.+|||||..       ........++  .++|+++
T Consensus        23 vG~~~~GKTsl~~~l~~~~~--~~-~~-pt~g~~~~~~~~~~~~~~i~D~~Gq~-------~~~~~~~~~~--~~a~~iI   89 (181)
T PLN00223         23 VGLDAAGKTTILYKLKLGEI--VT-TI-PTIGFNVETVEYKNISFTVWDVGGQD-------KIRPLWRHYF--QNTQGLI   89 (181)
T ss_pred             ECCCCCCHHHHHHHHccCCC--cc-cc-CCcceeEEEEEECCEEEEEEECCCCH-------HHHHHHHHHh--ccCCEEE
Confidence            69999999999999986543  12 12 22222233456678899999999962       1222222222  4789999


Q ss_pred             EEEecCCcC-CCHHHHHHHHHHHHhcCcC--cCCcEEEEEeCccCC
Q 024586           81 YVDRLDVYR-VDNLDKQITRAITDNFGEQ--IWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~~r-~~~~d~~~l~~l~~~~g~~--~~~~~ivV~tk~D~~  123 (265)
                      +|++.++.. +.    ...+.+.+.....  ...|+++|+||.|+.
T Consensus        90 ~V~D~s~~~s~~----~~~~~l~~~l~~~~~~~~piilv~NK~Dl~  131 (181)
T PLN00223         90 FVVDSNDRDRVV----EARDELHRMLNEDELRDAVLLVFANKQDLP  131 (181)
T ss_pred             EEEeCCcHHHHH----HHHHHHHHHhcCHhhCCCCEEEEEECCCCC
Confidence            997766421 22    2223333332211  137999999999984

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.27  E-value=2.5e-11  Score=98.40  Aligned_cols=120  Identities=16%  Similarity=0.123  Sum_probs=81.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+-.+..... .....+............+++  .++.||||.|..........+    .     +++++
T Consensus        11 LG~~~VGKSSlV~Rfvk~~F-~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMY----y-----RgA~A   80 (200)
T KOG0092|consen   11 LGDSGVGKSSLVLRFVKDQF-HENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMY----Y-----RGANA   80 (200)
T ss_pred             ECCCCCCchhhhhhhhhCcc-ccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccce----e-----cCCcE
Confidence            69999999999999888763 221111122223333445555  566799999985433222211    1     48999


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHHH
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEV  132 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~~  132 (265)
                      .|+|++++.......-+.+++.|++..+++  .-+.+|.||+|+...+...+++
T Consensus        81 AivvYDit~~~SF~~aK~WvkeL~~~~~~~--~vialvGNK~DL~~~R~V~~~e  132 (200)
T KOG0092|consen   81 AIVVYDITDEESFEKAKNWVKELQRQASPN--IVIALVGNKADLLERREVEFEE  132 (200)
T ss_pred             EEEEEecccHHHHHHHHHHHHHHHhhCCCC--eEEEEecchhhhhhcccccHHH
Confidence            999999987554456688999999887654  4566799999997656655544

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.27  E-value=2.1e-11  Score=98.21  Aligned_cols=98  Identities=20%  Similarity=0.286  Sum_probs=57.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+|+|||||+|+|.|....  .   ..|     ....+.+.  .+|||||+....   ......+...  ..++|+++
T Consensus         7 iG~~~~GKstl~~~l~~~~~~--~---~~~-----~~v~~~~~--~~iDtpG~~~~~---~~~~~~~~~~--~~~ad~il   69 (158)
T PRK15467          7 VGAVGAGKTTLFNALQGNYTL--A---RKT-----QAVEFNDK--GDIDTPGEYFSH---PRWYHALITT--LQDVDMLI   69 (158)
T ss_pred             ECCCCCCHHHHHHHHcCCCcc--C---ccc-----eEEEECCC--CcccCCccccCC---HHHHHHHHHH--HhcCCEEE
Confidence            699999999999999987521  1   111     12222222  269999985432   1222222211  24889999


Q ss_pred             EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|++.+... +.....    +.+. +.  .+|+++++||+|+.
T Consensus        70 ~v~d~~~~~-s~~~~~----~~~~-~~--~~~ii~v~nK~Dl~  104 (158)
T PRK15467         70 YVHGANDPE-SRLPAG----LLDI-GV--SKRQIAVISKTDMP  104 (158)
T ss_pred             EEEeCCCcc-cccCHH----HHhc-cC--CCCeEEEEEccccC
Confidence            997776422 111111    1221 11  26899999999984

>cd04116 Rab9 Rab9 subfamily

Probab=99.26  E-value=5.7e-11  Score=96.10  Aligned_cols=112  Identities=22%  Similarity=0.216  Sum_probs=67.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|++++... .....+..+.........+++.  .+.+|||||...       .......++  ..+|+
T Consensus        11 vG~~~~GKTsli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~-------~~~~~~~~~--~~~d~   80 (170)
T cd04116          11 LGDGGVGKSSLMNRYVTNKF-DTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQER-------FRSLRTPFY--RGSDC   80 (170)
T ss_pred             ECCCCCCHHHHHHHHHcCCC-CcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHH-------HHHhHHHHh--cCCCE
Confidence            69999999999999998763 2111111122222233445554  568899999632       111222222  47899


Q ss_pred             EEEEEecCCcC-CCHHHHHHHHHHHHhcCc--CcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYR-VDNLDKQITRAITDNFGE--QIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~--~~~~~~ivV~tk~D~~  123 (265)
                      +++|+++++.. +.. -..+...+......  ....|+++|+||+|+.
T Consensus        81 ~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  127 (170)
T cd04116          81 CLLTFAVDDSQSFQN-LSNWKKEFIYYADVKEPESFPFVVLGNKNDIP  127 (170)
T ss_pred             EEEEEECCCHHHHHh-HHHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence            99998888633 222 23455555544321  1236899999999985

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>PLN03108 Rab family protein; Provisional

Probab=99.26  E-value=8.4e-11  Score=99.08  Aligned_cols=112  Identities=15%  Similarity=0.083  Sum_probs=67.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|.|++....... .+..+.........+++.  .+.+|||||...       +......++  ..+|+
T Consensus        12 vG~~gvGKStLi~~l~~~~~~~~~-~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~-------~~~~~~~~~--~~ad~   81 (210)
T PLN03108         12 IGDTGVGKSCLLLQFTDKRFQPVH-DLTIGVEFGARMITIDNKPIKLQIWDTAGQES-------FRSITRSYY--RGAAG   81 (210)
T ss_pred             ECCCCCCHHHHHHHHHhCCCCCCC-CCCccceEEEEEEEECCEEEEEEEEeCCCcHH-------HHHHHHHHh--ccCCE
Confidence            699999999999999987642221 111112222223445553  578999999632       111112222  37899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      +++|++++.......-..++..+......  ..|+++|+||+|+..
T Consensus        82 ~vlv~D~~~~~s~~~l~~~~~~~~~~~~~--~~piiiv~nK~Dl~~  125 (210)
T PLN03108         82 ALLVYDITRRETFNHLASWLEDARQHANA--NMTIMLIGNKCDLAH  125 (210)
T ss_pred             EEEEEECCcHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccCcc
Confidence            99998776533122223455555554433  378999999999854

>cd01892 Miro2 Miro2 subfamily

Probab=99.25  E-value=2e-10  Score=93.31  Aligned_cols=109  Identities=15%  Similarity=0.064  Sum_probs=65.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCc-cEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPR-PVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~-~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (265)
                      +|.+|||||||++++++... .+..+.+++.. ........+|  ..+.++||+|..........+   +      .++|
T Consensus        10 vG~~~vGKTsli~~~~~~~f-~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~---~------~~~d   79 (169)
T cd01892          10 LGAKGSGKSALLRAFLGRSF-SLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAE---L------AACD   79 (169)
T ss_pred             ECCCCCcHHHHHHHHhCCCC-CcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhh---h------hcCC
Confidence            69999999999999999874 21333333322 2223445566  467899999975443222211   1      3789


Q ss_pred             EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ++|+|+++++.   .....+.+.+.. +......|+++|+||+|+.
T Consensus        80 ~~llv~d~~~~---~s~~~~~~~~~~-~~~~~~~p~iiv~NK~Dl~  121 (169)
T cd01892          80 VACLVYDSSDP---KSFSYCAEVYKK-YFMLGEIPCLFVAAKADLD  121 (169)
T ss_pred             EEEEEEeCCCH---HHHHHHHHHHHH-hccCCCCeEEEEEEccccc
Confidence            99999776542   111122222222 2111248999999999984

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.25  E-value=7.5e-11  Score=98.89  Aligned_cols=68  Identities=18%  Similarity=0.115  Sum_probs=41.9

Q ss_pred             eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccC
Q 024586           43 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL  122 (265)
Q Consensus        43 ~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~  122 (265)
                      ..+.+|||||..       .+...+...+  ..+|++++|++.+...........+..+.. .+.   +|+++|+||+|+
T Consensus        83 ~~i~~iDtPG~~-------~~~~~~~~~~--~~~D~~llVvd~~~~~~~~~t~~~l~~~~~-~~~---~~iiivvNK~Dl  149 (203)
T cd01888          83 RHVSFVDCPGHE-------ILMATMLSGA--AVMDGALLLIAANEPCPQPQTSEHLAALEI-MGL---KHIIIVQNKIDL  149 (203)
T ss_pred             cEEEEEECCChH-------HHHHHHHHhh--hcCCEEEEEEECCCCCCCcchHHHHHHHHH-cCC---CcEEEEEEchhc
Confidence            789999999952       2323322222  378999999776642123333444444432 221   579999999998


Q ss_pred             C
Q 024586          123 S  123 (265)
Q Consensus       123 ~  123 (265)
                      .
T Consensus       150 ~  150 (203)
T cd01888         150 V  150 (203)
T ss_pred             c
Confidence            4

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.24  E-value=4.1e-11  Score=101.73  Aligned_cols=109  Identities=10%  Similarity=0.035  Sum_probs=67.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCC-CccEEEEeeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEG-PRPVMVSRSRA--GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t-~~~~~~~~~~~--g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (265)
                      +|.+|||||||+++++....  ...+.++. ..........+  ...+.+|||||.......       ...++  .++|
T Consensus        19 vG~~gvGKTsli~~~~~~~f--~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-------~~~~~--~~~~   87 (219)
T PLN03071         19 VGDGGTGKTTFVKRHLTGEF--EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL-------RDGYY--IHGQ   87 (219)
T ss_pred             ECcCCCCHHHHHHHHhhCCC--CCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhh-------hHHHc--cccc
Confidence            69999999999999887652  12222221 11112222222  357899999997543211       11111  3789


Q ss_pred             EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ++|+|++++.......-..+++.+.+...   ..|+++|+||+|+.
T Consensus        88 ~~ilvfD~~~~~s~~~i~~w~~~i~~~~~---~~piilvgNK~Dl~  130 (219)
T PLN03071         88 CAIIMFDVTARLTYKNVPTWHRDLCRVCE---NIPIVLCGNKVDVK  130 (219)
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhhh
Confidence            99999888763322233467777765532   27999999999984

>cd04111 Rab39 Rab39 subfamily

Probab=99.24  E-value=6.5e-11  Score=99.88  Aligned_cols=113  Identities=16%  Similarity=0.119  Sum_probs=67.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeee-CC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR-AG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~-~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (265)
                      +|.+|||||||+|.+++........ +..+.+........ ++  ..+.+|||||....       ......++  ..+|
T Consensus         8 vG~~~vGKTsLi~~l~~~~~~~~~~-~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~--~~~d   77 (211)
T cd04111           8 IGDSTVGKSSLLKRFTEGRFAEVSD-PTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERF-------RSITRSYY--RNSV   77 (211)
T ss_pred             ECCCCCCHHHHHHHHHcCCCCCCCC-ceeceEEEEEEEEECCCCEEEEEEEeCCcchhH-------HHHHHHHh--cCCc
Confidence            6999999999999999876422221 11112222222333 23  46889999996321       11112222  4789


Q ss_pred             EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      ++++|+++++......-..+++.+.+..... ..++++|.||+|+..
T Consensus        78 ~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~-~~~iilvgNK~Dl~~  123 (211)
T cd04111          78 GVLLVFDITNRESFEHVHDWLEEARSHIQPH-RPVFILVGHKCDLES  123 (211)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCC-CCeEEEEEEcccccc
Confidence            9999988875331122335666665554321 256889999999854

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04167 Snu114p Snu114p subfamily

Probab=99.24  E-value=1.2e-10  Score=98.34  Aligned_cols=108  Identities=16%  Similarity=0.179  Sum_probs=63.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCccccc---------CC---------CCCCCccEEEEeee-----CCeEEEEEeCCCCCCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVS---------TF---------QSEGPRPVMVSRSR-----AGFTLNIVDTPGLIEGG   57 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~---------~~---------~~~t~~~~~~~~~~-----~g~~v~iiDTPG~~~~~   57 (265)
                      +|..|+|||||+++|++.......         .+         .+.|.........+     ....+.+|||||..+..
T Consensus         6 iG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~~~f~   85 (213)
T cd04167           6 AGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGHVNFM   85 (213)
T ss_pred             EcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCCcchH
Confidence            699999999999999975432110         00         01111111122222     23678999999986431


Q ss_pred             CCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           58 YVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        58 ~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                         ......+.      .+|++++|++... .....+..+++.+...   +  .|+++|+||+|+.
T Consensus        86 ---~~~~~~~~------~aD~~llVvD~~~-~~~~~~~~~~~~~~~~---~--~p~iiviNK~D~~  136 (213)
T cd04167          86 ---DEVAAALR------LSDGVVLVVDVVE-GVTSNTERLIRHAILE---G--LPIVLVINKIDRL  136 (213)
T ss_pred             ---HHHHHHHH------hCCEEEEEEECCC-CCCHHHHHHHHHHHHc---C--CCEEEEEECcccC
Confidence               12222222      7799999976653 2334444444444322   2  7899999999985

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.24  E-value=2.3e-11  Score=111.23  Aligned_cols=126  Identities=20%  Similarity=0.258  Sum_probs=93.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHH-HHHhcCCccEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIK-RFLLNKTIDVL   79 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~-~~l~~~~~d~i   79 (265)
                      +|-++|||||++|.+...++ .+.+++.||.....++..+.-..+.++||||+.+....+...+++.. ..+.+ =--+|
T Consensus       174 cG~PNVGKSSf~~~vtradv-evqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAH-LraaV  251 (620)
T KOG1490|consen  174 CGYPNVGKSSFNNKVTRADD-EVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAH-LRSAV  251 (620)
T ss_pred             ecCCCCCcHhhccccccccc-ccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHH-hhhhh
Confidence            58999999999999998876 78888888888877777777788999999999876544433333222 12211 12478


Q ss_pred             EEEEecCCcC-CC-HHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHH
Q 024586           80 LYVDRLDVYR-VD-NLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE  131 (265)
Q Consensus        80 L~V~~~d~~r-~~-~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~  131 (265)
                      ||+++++... .+ .+..+++..|...|.+   +++|+|+||+|...+++.+.+
T Consensus       252 LYfmDLSe~CGySva~QvkLfhsIKpLFaN---K~~IlvlNK~D~m~~edL~~~  302 (620)
T KOG1490|consen  252 LYFMDLSEMCGYSVAAQVKLYHSIKPLFAN---KVTILVLNKIDAMRPEDLDQK  302 (620)
T ss_pred             eeeeechhhhCCCHHHHHHHHHHhHHHhcC---CceEEEeecccccCccccCHH
Confidence            9998887533 33 4556888999999976   899999999999877765543

>PLN03126 Elongation factor Tu; Provisional

Probab=99.24  E-value=3e-10  Score=106.68  Aligned_cols=129  Identities=12%  Similarity=0.016  Sum_probs=78.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccc---------------cCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHH
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTV---------------STFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQ   65 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~---------------~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~   65 (265)
                      +|..++|||||+++|++......               ....+.|.+......+.++..+++|||||..       ++..
T Consensus        87 iGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~-------~f~~  159 (478)
T PLN03126         87 IGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHA-------DYVK  159 (478)
T ss_pred             ECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHH-------HHHH
Confidence            59999999999999996321110               0112233333334455678899999999973       3333


Q ss_pred             HHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHHHHHhhchHHHHHHH
Q 024586           66 LIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFV  145 (265)
Q Consensus        66 ~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i  145 (265)
                      .+...+  ..+|++++|++.+. ......++.+..+... |.   +++++++||+|+.+     .++..+...+.+++++
T Consensus       160 ~~~~g~--~~aD~ailVVda~~-G~~~qt~e~~~~~~~~-gi---~~iIvvvNK~Dl~~-----~~~~~~~i~~~i~~~l  227 (478)
T PLN03126        160 NMITGA--AQMDGAILVVSGAD-GPMPQTKEHILLAKQV-GV---PNMVVFLNKQDQVD-----DEELLELVELEVRELL  227 (478)
T ss_pred             HHHHHH--hhCCEEEEEEECCC-CCcHHHHHHHHHHHHc-CC---CeEEEEEecccccC-----HHHHHHHHHHHHHHHH
Confidence            443333  37899999976553 3556666666665544 21   34889999999853     1222222234566666


Q ss_pred             hcc
Q 024586          146 SPS  148 (265)
Q Consensus       146 ~~~  148 (265)
                      +..
T Consensus       228 ~~~  230 (478)
T PLN03126        228 SSY  230 (478)
T ss_pred             Hhc
Confidence            554

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.24  E-value=1.1e-10  Score=94.89  Aligned_cols=120  Identities=19%  Similarity=0.188  Sum_probs=82.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCC-CCccEEEEeeeCCeE--EEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMVSRSRAGFT--LNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~-t~~~~~~~~~~~g~~--v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (265)
                      +|..+|||||||+.+.-...  -..+.++ +.+.......+.|++  +.+|||.|...       ....+-.+.  +++.
T Consensus        28 lGdqsVGKTslItRf~yd~f--d~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQER-------FrslipsY~--Rds~   96 (221)
T KOG0094|consen   28 LGDQSVGKTSLITRFMYDKF--DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-------FRSLIPSYI--RDSS   96 (221)
T ss_pred             EccCccchHHHHHHHHHhhh--cccccceeeeEEEEEEEEEcCcEEEEEEEecccHHH-------Hhhhhhhhc--cCCe
Confidence            69999999999999998763  2233322 333444455666764  58999999832       222233332  4789


Q ss_pred             EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHHH
Q 024586           78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEV  132 (265)
Q Consensus        78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~~  132 (265)
                      ++++|+++.+........+|++.+.+..|.+- ..+++|.||.||.+.++.+.++
T Consensus        97 vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~-viI~LVGnKtDL~dkrqvs~eE  150 (221)
T KOG0094|consen   97 VAVIVYDITDRNSFENTSKWIEDVRRERGSDD-VIIFLVGNKTDLSDKRQVSIEE  150 (221)
T ss_pred             EEEEEEeccccchHHHHHHHHHHHHhccCCCc-eEEEEEcccccccchhhhhHHH
Confidence            99999999875555666789988888777631 5678899999998665555544

>cd04128 Spg1 Spg1p

Probab=99.24  E-value=1.9e-10  Score=94.75  Aligned_cols=109  Identities=17%  Similarity=0.084  Sum_probs=66.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCC-CccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEG-PRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t-~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (265)
                      +|.+|||||||++++++...  ...+.++. ..........++  ..+.+|||+|.....       .....+  ..++|
T Consensus         6 lG~~~vGKTsLi~~~~~~~f--~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~-------~~~~~~--~~~a~   74 (182)
T cd04128           6 LGDAQIGKTSLMVKYVEGEF--DEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFI-------NMLPLV--CNDAV   74 (182)
T ss_pred             ECCCCCCHHHHHHHHHhCCC--CCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHH-------HhhHHH--CcCCC
Confidence            69999999999999998763  22233222 122223445566  457899999974221       111111  25889


Q ss_pred             EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ++++|+++++......-..+++.+.+.....  .| ++|+||+|+.
T Consensus        75 ~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~--~p-ilVgnK~Dl~  117 (182)
T cd04128          75 AILFMFDLTRKSTLNSIKEWYRQARGFNKTA--IP-ILVGTKYDLF  117 (182)
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CE-EEEEEchhcc
Confidence            9999988775322222235666665543322  44 6889999984

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.23  E-value=2.4e-10  Score=97.12  Aligned_cols=108  Identities=13%  Similarity=0.165  Sum_probs=66.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccC---------------CCCCCCccEEEEeeeC----------CeEEEEEeCCCCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVST---------------FQSEGPRPVMVSRSRA----------GFTLNIVDTPGLIE   55 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~---------------~~~~t~~~~~~~~~~~----------g~~v~iiDTPG~~~   55 (265)
                      +|..++|||||+++|+.........               ..+.|.........+.          +..+.+|||||..+
T Consensus         6 iGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTPG~~~   85 (222)
T cd01885           6 IAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSPGHVD   85 (222)
T ss_pred             ECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCCCccc
Confidence            6899999999999998653211100               0112222222222232          66789999999864


Q ss_pred             CCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           56 GGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        56 ~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ..   .+....+      ..+|++++|+++.. ......+..++......     .|+++|+||+|+.
T Consensus        86 f~---~~~~~~l------~~aD~~ilVvD~~~-g~~~~t~~~l~~~~~~~-----~p~ilviNKiD~~  138 (222)
T cd01885          86 FS---SEVTAAL------RLCDGALVVVDAVE-GVCVQTETVLRQALKER-----VKPVLVINKIDRL  138 (222)
T ss_pred             cH---HHHHHHH------HhcCeeEEEEECCC-CCCHHHHHHHHHHHHcC-----CCEEEEEECCCcc
Confidence            32   1222222      37899999977654 35555666666554432     6899999999974

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>cd04129 Rho2 Rho2 subfamily

Probab=99.23  E-value=8.9e-11  Score=96.95  Aligned_cols=109  Identities=16%  Similarity=0.136  Sum_probs=69.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|.|.....  .....++...........++.  .+.++||||..........         ....+|+
T Consensus         7 vG~~g~GKStLl~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~---------~~~~a~~   75 (187)
T cd04129           7 VGDGACGKTSLLSVFTLGEF--PEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPL---------SYSKAHV   75 (187)
T ss_pred             ECCCCCCHHHHHHHHHhCCC--CcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchh---------hcCCCCE
Confidence            69999999999999985542  122222222222333444554  4689999997543221110         1147899


Q ss_pred             EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +++|++++... +......+++.+.+....   .|+++|+||+|+.
T Consensus        76 ~llv~~i~~~~s~~~~~~~~~~~i~~~~~~---~piilvgnK~Dl~  118 (187)
T cd04129          76 ILIGFAVDTPDSLENVRTKWIEEVRRYCPN---VPVILVGLKKDLR  118 (187)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCCC---CCEEEEeeChhhh
Confidence            99998887643 333334567777665432   8999999999984

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.23  E-value=9.3e-11  Score=98.18  Aligned_cols=109  Identities=12%  Similarity=0.070  Sum_probs=68.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCC-CccEEEEeeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEG-PRPVMVSRSRA--GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t-~~~~~~~~~~~--g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (265)
                      ||..|||||||++++++...  ...+.++. .........++  ...+.||||||......       ....++  .++|
T Consensus         1 vG~~~vGKTsLi~r~~~~~f--~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~-------l~~~~~--~~ad   69 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEF--EKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGG-------LRDGYY--IQGQ   69 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCC--CCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhh-------hhHHHh--cCCC
Confidence            79999999999999997652  22222221 12222233333  35789999999843221       111122  4789


Q ss_pred             EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ++++|+++++......-..+++.+.+...   ..|+++|+||+|+.
T Consensus        70 ~~ilV~D~t~~~S~~~i~~w~~~i~~~~~---~~piilvgNK~Dl~  112 (200)
T smart00176       70 CAIIMFDVTARVTYKNVPNWHRDLVRVCE---NIPIVLCGNKVDVK  112 (200)
T ss_pred             EEEEEEECCChHHHHHHHHHHHHHHHhCC---CCCEEEEEECcccc
Confidence            99999888763322223457777776542   27999999999984

Ran is involved in the active transport of proteins through nuclear pores.

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.22  E-value=2.2e-10  Score=100.10  Aligned_cols=108  Identities=15%  Similarity=0.241  Sum_probs=68.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCccc--ccCC---------------CCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVT--VSTF---------------QSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA   63 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~--~~~~---------------~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~   63 (265)
                      +|.+|+|||||+|+|++.....  .+..               ...|.........+++..+++|||||..+.       
T Consensus         5 vG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f-------   77 (268)
T cd04170           5 VGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADF-------   77 (268)
T ss_pred             ECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHH-------
Confidence            6999999999999998643211  1100               012223334556678899999999998431       


Q ss_pred             HHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           64 IQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        64 ~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ...+..++  ..+|++++|++.+. ........+++.+...     ..|.++|+||+|..
T Consensus        78 ~~~~~~~l--~~aD~~i~Vvd~~~-g~~~~~~~~~~~~~~~-----~~p~iivvNK~D~~  129 (268)
T cd04170          78 VGETRAAL--RAADAALVVVSAQS-GVEVGTEKLWEFADEA-----GIPRIIFINKMDRE  129 (268)
T ss_pred             HHHHHHHH--HHCCEEEEEEeCCC-CCCHHHHHHHHHHHHc-----CCCEEEEEECCccC
Confidence            12222222  27799999976654 2344445555554433     27899999999984

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PLN03127 Elongation factor Tu; Provisional

Probab=99.22  E-value=4.2e-10  Score=104.99  Aligned_cols=108  Identities=13%  Similarity=0.030  Sum_probs=72.6

Q ss_pred             CCCCCCCHHHHHHHHhCC------Ccccc---------cCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHH
Q 024586            1 MGKGGVGKSSTVNSIIGE------KAVTV---------STFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQ   65 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~------~~~~~---------~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~   65 (265)
                      +|..++|||||+++|.+.      .....         ....+.|........+.++.+++++||||+.+       +..
T Consensus        67 iGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~-------f~~  139 (447)
T PLN03127         67 IGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD-------YVK  139 (447)
T ss_pred             ECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc-------hHH
Confidence            589999999999999843      11000         01134555555566667788999999999842       233


Q ss_pred             HHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCc-EEEEEeCccCC
Q 024586           66 LIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR-ALIVLTHAQLS  123 (265)
Q Consensus        66 ~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~-~ivV~tk~D~~  123 (265)
                      .+...+  ..+|++++|++.+. .....+++.+..+....     .+ +|+|+||+|+.
T Consensus       140 ~~~~g~--~~aD~allVVda~~-g~~~qt~e~l~~~~~~g-----ip~iIvviNKiDlv  190 (447)
T PLN03127        140 NMITGA--AQMDGGILVVSAPD-GPMPQTKEHILLARQVG-----VPSLVVFLNKVDVV  190 (447)
T ss_pred             HHHHHH--hhCCEEEEEEECCC-CCchhHHHHHHHHHHcC-----CCeEEEEEEeeccC
Confidence            333222  26899999976543 35677777777766543     55 67899999985

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.22  E-value=3e-10  Score=95.24  Aligned_cols=112  Identities=15%  Similarity=0.081  Sum_probs=68.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCcc--EEEEeeeC-----C--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRP--VMVSRSRA-----G--FTLNIVDTPGLIEGGYVNYHAIQLIKRFL   71 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~--~~~~~~~~-----g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l   71 (265)
                      +|.+|||||||++.+.+...  .....+ |..+  ......+.     +  ..+.+|||+|....       ......++
T Consensus         6 vGd~gVGKTSLi~~~~~~~f--~~~~~~-Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~-------~~l~~~~y   75 (202)
T cd04102           6 VGDSGVGKSSLVHLICKNQV--LGRPSW-TVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESV-------KSTRAVFY   75 (202)
T ss_pred             ECCCCCCHHHHHHHHHcCCC--CCCCCc-ceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhH-------HHHHHHHh
Confidence            69999999999999998763  222222 2221  11122221     2  36799999997322       11111122


Q ss_pred             hcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcC-----------------cCcCCcEEEEEeCccCCC
Q 024586           72 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFG-----------------EQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        72 ~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g-----------------~~~~~~~ivV~tk~D~~~  124 (265)
                        .++|++++|+++++....+.-..|++.+...-+                 .....|+++|.||+|+.+
T Consensus        76 --r~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~  143 (202)
T cd04102          76 --NQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP  143 (202)
T ss_pred             --CcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchh
Confidence              488999999998864322233467777755321                 112379999999999954

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.21  E-value=2.4e-10  Score=95.90  Aligned_cols=110  Identities=17%  Similarity=0.173  Sum_probs=61.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEee--eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCc-c
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS--RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI-D   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~--~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~-d   77 (265)
                      +|.+|+|||||++.|.+.....  ..++++.........  ..+..+.+|||||....       ......++.  .. +
T Consensus         6 ~G~~~sGKTsL~~~l~~~~~~~--t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~-------~~~~~~~~~--~~~~   74 (203)
T cd04105           6 LGPSDSGKTALFTKLTTGKYRS--TVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKL-------RDKLLETLK--NSAK   74 (203)
T ss_pred             EcCCCCCHHHHHHHHhcCCCCC--ccCcEeecceEEEeecCCCCceEEEEECCCCHHH-------HHHHHHHHh--ccCC
Confidence            6999999999999999875321  122221111111111  23678999999997422       222222222  44 9


Q ss_pred             EEEEEEecCCcCCCHHHHHHHHHHHHhcC----cCcCCcEEEEEeCccCC
Q 024586           78 VLLYVDRLDVYRVDNLDKQITRAITDNFG----EQIWKRALIVLTHAQLS  123 (265)
Q Consensus        78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g----~~~~~~~ivV~tk~D~~  123 (265)
                      +++||++....  ...-....+.+...+.    .....|+++|.||+|+.
T Consensus        75 ~vV~VvD~~~~--~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~  122 (203)
T cd04105          75 GIVFVVDSATF--QKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLF  122 (203)
T ss_pred             EEEEEEECccc--hhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhc
Confidence            99999766542  1111222222222111    11238999999999985

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>PRK12736 elongation factor Tu; Reviewed

Probab=99.21  E-value=4.2e-10  Score=103.65  Aligned_cols=166  Identities=14%  Similarity=0.102  Sum_probs=95.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcc------ccc---------CCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHH
Q 024586            1 MGKGGVGKSSTVNSIIGEKAV------TVS---------TFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQ   65 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~------~~~---------~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~   65 (265)
                      +|..++|||||+++|++....      ...         ...+.|..........++..++++||||..       ++..
T Consensus        18 ~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~-------~f~~   90 (394)
T PRK12736         18 IGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHA-------DYVK   90 (394)
T ss_pred             EccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHH-------HHHH
Confidence            589999999999999974210      000         022344444444445567889999999963       3333


Q ss_pred             HHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCc-EEEEEeCccCCCCCCCCHHHHHhhchHHHHHH
Q 024586           66 LIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR-ALIVLTHAQLSLPDRLDYEVFCSKRSEALLKF  144 (265)
Q Consensus        66 ~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~-~ivV~tk~D~~~~~~~~~~~~~~~~~~~l~~~  144 (265)
                      .+...+  ..+|++++|++.+. .....+.+.+..+... |    .+ +|+|+||+|+.+  .   ++..+...+.+.++
T Consensus        91 ~~~~~~--~~~d~~llVvd~~~-g~~~~t~~~~~~~~~~-g----~~~~IvviNK~D~~~--~---~~~~~~i~~~i~~~  157 (394)
T PRK12736         91 NMITGA--AQMDGAILVVAATD-GPMPQTREHILLARQV-G----VPYLVVFLNKVDLVD--D---EELLELVEMEVREL  157 (394)
T ss_pred             HHHHHH--hhCCEEEEEEECCC-CCchhHHHHHHHHHHc-C----CCEEEEEEEecCCcc--h---HHHHHHHHHHHHHH
Confidence            332222  37899999976653 3556677777766554 2    45 788999999842  1   11221112445555


Q ss_pred             HhccccccccccccCCchhHhhhcCCcCCCCccccccCCCCCCC---hHHHHHHHHHHhhC
Q 024586          145 VSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAW---IPNLVKTITEVVLN  202 (265)
Q Consensus       145 i~~~~~~~~~~~~~~~ip~~~~~n~~~~~~~~~~~~~lp~~~~W---~~~L~~~i~~~~~~  202 (265)
                      +...+. ..     ..+|++.+++.    ++..+      ...|   ++.|++.+.+.++.
T Consensus       158 l~~~~~-~~-----~~~~ii~vSa~----~g~~~------~~~~~~~i~~Ll~~l~~~lp~  202 (394)
T PRK12736        158 LSEYDF-PG-----DDIPVIRGSAL----KALEG------DPKWEDAIMELMDAVDEYIPT  202 (394)
T ss_pred             HHHhCC-Cc-----CCccEEEeecc----ccccC------CCcchhhHHHHHHHHHHhCCC
Confidence            543321 11     12455554432    22111      1246   57888888887763

>cd04169 RF3 RF3 subfamily

Probab=99.21  E-value=3.7e-10  Score=98.64  Aligned_cols=108  Identities=10%  Similarity=0.119  Sum_probs=68.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCccc--c-------------cCCC------CCCCccEEEEeeeCCeEEEEEeCCCCCCCCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVT--V-------------STFQ------SEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV   59 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~--~-------------~~~~------~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~   59 (265)
                      +|..|+|||||+|+|+......  .             .++.      +.+........++++.++++|||||..+..  
T Consensus         8 vGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~df~--   85 (267)
T cd04169           8 ISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHEDFS--   85 (267)
T ss_pred             EcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchHHH--
Confidence            6999999999999998542111  0             1110      111123334667889999999999985321  


Q ss_pred             cHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           60 NYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        60 ~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                       .+....++      .+|++++|++... ........+++.....     ..|+++++||+|+.
T Consensus        86 -~~~~~~l~------~aD~~IlVvda~~-g~~~~~~~i~~~~~~~-----~~P~iivvNK~D~~  136 (267)
T cd04169          86 -EDTYRTLT------AVDSAVMVIDAAK-GVEPQTRKLFEVCRLR-----GIPIITFINKLDRE  136 (267)
T ss_pred             -HHHHHHHH------HCCEEEEEEECCC-CccHHHHHHHHHHHhc-----CCCEEEEEECCccC
Confidence             12222222      7799999976653 3444445555544332     27899999999974

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.20  E-value=5.6e-10  Score=107.45  Aligned_cols=109  Identities=18%  Similarity=0.145  Sum_probs=70.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccc--cCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTV--STFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~--~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+++|||||+|+|.|......  ....+.|..........++..+.+|||||..       .+...+....  .++|+
T Consensus         6 iG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe-------~f~~~~~~g~--~~aD~   76 (581)
T TIGR00475         6 AGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHE-------KFISNAIAGG--GGIDA   76 (581)
T ss_pred             ECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHH-------HHHHHHHhhh--ccCCE
Confidence            59999999999999998642111  1122344444444566777899999999962       2333332222  47899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +++|++.+. .......+.+..+.. .|.   +++++|+||+|+.
T Consensus        77 aILVVDa~~-G~~~qT~ehl~il~~-lgi---~~iIVVlNK~Dlv  116 (581)
T TIGR00475        77 ALLVVDADE-GVMTQTGEHLAVLDL-LGI---PHTIVVITKADRV  116 (581)
T ss_pred             EEEEEECCC-CCcHHHHHHHHHHHH-cCC---CeEEEEEECCCCC
Confidence            999977764 244455555554433 331   3499999999985

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.19  E-value=1.5e-10  Score=107.76  Aligned_cols=110  Identities=15%  Similarity=0.111  Sum_probs=71.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCccccc------------------------C------CCCCCCccEEEEeeeCCeEEEEEeC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVS------------------------T------FQSEGPRPVMVSRSRAGFTLNIVDT   50 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~------------------------~------~~~~t~~~~~~~~~~~g~~v~iiDT   50 (265)
                      +|..++|||||+|+|++.......                        +      ..+.|........+.++..+.+|||
T Consensus        12 iGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~~i~liDt   91 (425)
T PRK12317         12 IGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKYYFTIVDC   91 (425)
T ss_pred             ECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCeEEEEEEC
Confidence            699999999999999954321110                        0      2456666666677788899999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCc-CCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           51 PGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~-r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ||..+..   ..+...+      ..+|++++|++.+.. .+...+...+..+. ..+.   +++++|+||+|+.
T Consensus        92 pG~~~~~---~~~~~~~------~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~-~~~~---~~iivviNK~Dl~  152 (425)
T PRK12317         92 PGHRDFV---KNMITGA------SQADAAVLVVAADDAGGVMPQTREHVFLAR-TLGI---NQLIVAINKMDAV  152 (425)
T ss_pred             CCcccch---hhHhhch------hcCCEEEEEEEcccCCCCCcchHHHHHHHH-HcCC---CeEEEEEEccccc
Confidence            9973211   1111111      378999999776541 23344444444443 3332   5799999999985

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.18  E-value=2.5e-10  Score=92.98  Aligned_cols=118  Identities=19%  Similarity=0.181  Sum_probs=83.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||-|.-.+.+... ..+.......+......+++|.  ++.||||.|..       .....+..+.  +++|+
T Consensus        15 iGds~VGKtCL~~Rf~~~~f-~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQE-------RFrtit~syY--R~ahG   84 (205)
T KOG0084|consen   15 IGDSGVGKTCLLLRFKDDTF-TESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQE-------RFRTITSSYY--RGAHG   84 (205)
T ss_pred             ECCCCcChhhhhhhhccCCc-chhhcceeeeEEEEEEeeecceEEEEEeeeccccH-------HHhhhhHhhc--cCCCe
Confidence            69999999999999998873 2222222234445556677776  46899999982       2222233322  58999


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCH
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY  130 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~  130 (265)
                      ||+|++++..+....-..|++.+.+..+++  .+.++|.||+|+......+.
T Consensus        85 ii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~--v~~lLVGNK~Dl~~~~~v~~  134 (205)
T KOG0084|consen   85 IIFVYDITKQESFNNVKRWIQEIDRYASEN--VPKLLVGNKCDLTEKRVVST  134 (205)
T ss_pred             EEEEEEcccHHHhhhHHHHHHHhhhhccCC--CCeEEEeeccccHhheecCH
Confidence            999999987664455678999999988776  78999999999954333333

>smart00053 DYNc Dynamin, GTPase

Probab=99.18  E-value=4.2e-10  Score=96.46  Aligned_cols=74  Identities=22%  Similarity=0.322  Sum_probs=46.0

Q ss_pred             EEEEEeCCCCCCCC--CCc----HHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHH-HHHHHHHHHhcCcCcCCcEEEE
Q 024586           44 TLNIVDTPGLIEGG--YVN----YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLD-KQITRAITDNFGEQIWKRALIV  116 (265)
Q Consensus        44 ~v~iiDTPG~~~~~--~~~----~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d-~~~l~~l~~~~g~~~~~~~ivV  116 (265)
                      .+++|||||+....  ...    +.+.+.+..++.. ..+++|+|++... .+...+ .++.+.+....     +++++|
T Consensus       126 ~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~-~~~IIL~Vvda~~-d~~~~d~l~ia~~ld~~~-----~rti~V  198 (240)
T smart00053      126 NLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISK-EECLILAVTPANV-DLANSDALKLAKEVDPQG-----ERTIGV  198 (240)
T ss_pred             ceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhC-ccCeEEEEEECCC-CCCchhHHHHHHHHHHcC-----CcEEEE
Confidence            47999999997431  111    2233344445432 4468888865432 244445 46666665543     899999


Q ss_pred             EeCccCCC
Q 024586          117 LTHAQLSL  124 (265)
Q Consensus       117 ~tk~D~~~  124 (265)
                      +||+|...
T Consensus       199 iTK~D~~~  206 (240)
T smart00053      199 ITKLDLMD  206 (240)
T ss_pred             EECCCCCC
Confidence            99999863

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.18  E-value=1.2e-09  Score=87.85  Aligned_cols=104  Identities=16%  Similarity=0.118  Sum_probs=68.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||++.+++...  ..... ++.........++|  ..+.+|||+|..+     ..   ..      ..+|+
T Consensus         6 vG~~gvGKTsli~~~~~~~f--~~~~~-~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~---~~------~~~~~   68 (158)
T cd04103           6 VGNLQSGKSALVHRYLTGSY--VQLES-PEGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQ---FA------SWVDA   68 (158)
T ss_pred             ECCCCCcHHHHHHHHHhCCC--CCCCC-CCccceEEEEEECCEEEEEEEEECCCCCc-----hh---HH------hcCCE
Confidence            69999999999999887642  12222 22222234456677  4578999999842     11   11      36899


Q ss_pred             EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +++|+++++.. +... ..+++.+...... ...|+++|.||.|+.
T Consensus        69 ~ilv~d~~~~~sf~~~-~~~~~~i~~~~~~-~~~piilvgnK~Dl~  112 (158)
T cd04103          69 VIFVFSLENEASFQTV-YNLYHQLSSYRNI-SEIPLILVGTQDAIS  112 (158)
T ss_pred             EEEEEECCCHHHHHHH-HHHHHHHHHhcCC-CCCCEEEEeeHHHhh
Confidence            99999888644 3332 4577777665431 226899999999984

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.17  E-value=2e-10  Score=92.00  Aligned_cols=117  Identities=21%  Similarity=0.164  Sum_probs=75.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCC-CccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEG-PRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t-~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (265)
                      +|..|||||||++++.+...  .....++. .+........++.  .+.+|||+|....    ......   +  ..++|
T Consensus         5 vG~~~vGKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~----~~~~~~---~--~~~~~   73 (162)
T PF00071_consen    5 VGDSGVGKTSLINRLINGEF--PENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERF----DSLRDI---F--YRNSD   73 (162)
T ss_dssp             EESTTSSHHHHHHHHHHSST--TSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGG----HHHHHH---H--HTTES
T ss_pred             ECCCCCCHHHHHHHHHhhcc--ccccccccccccccccccccccccccccccccccccc----cccccc---c--ccccc
Confidence            69999999999999998763  22222222 2333444555555  4799999996321    111111   1  14889


Q ss_pred             EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCH
Q 024586           78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY  130 (265)
Q Consensus        78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~  130 (265)
                      ++++|+++++...-..-..+++.+....+..  .|+++|.||.|+...+..+.
T Consensus        74 ~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~--~~iivvg~K~D~~~~~~v~~  124 (162)
T PF00071_consen   74 AIIIVFDVTDEESFENLKKWLEEIQKYKPED--IPIIVVGNKSDLSDEREVSV  124 (162)
T ss_dssp             EEEEEEETTBHHHHHTHHHHHHHHHHHSTTT--SEEEEEEETTTGGGGSSSCH
T ss_pred             ccccccccccccccccccccccccccccccc--ccceeeeccccccccccchh
Confidence            9999999886442233347888888777632  79999999999864334333

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.17  E-value=2.7e-10  Score=112.22  Aligned_cols=107  Identities=15%  Similarity=0.103  Sum_probs=73.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+++|||||+++|.+..+. .+...+.|.+...+...+++..+++|||||..+..       ....+..  ..+|+++
T Consensus       296 mGhvd~GKTSLl~~Lr~~~v~-~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~-------~m~~rga--~~aDiaI  365 (787)
T PRK05306        296 MGHVDHGKTSLLDAIRKTNVA-AGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFT-------AMRARGA--QVTDIVV  365 (787)
T ss_pred             ECCCCCCHHHHHHHHHhCCcc-ccccCceeeeccEEEEEECCEEEEEEECCCCccch-------hHHHhhh--hhCCEEE
Confidence            699999999999999987653 33334455555556677788999999999985432       1112111  3679999


Q ss_pred             EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|++.++ .........+......     ..|+|||+||+|+.
T Consensus       366 LVVdAdd-Gv~~qT~e~i~~a~~~-----~vPiIVviNKiDl~  402 (787)
T PRK05306        366 LVVAADD-GVMPQTIEAINHAKAA-----GVPIIVAINKIDKP  402 (787)
T ss_pred             EEEECCC-CCCHhHHHHHHHHHhc-----CCcEEEEEECcccc
Confidence            9987764 2444555555444332     27899999999984

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.17  E-value=3.2e-10  Score=96.22  Aligned_cols=110  Identities=14%  Similarity=0.117  Sum_probs=67.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCccc------------------------ccC------CCCCCCccEEEEeeeCCeEEEEEeC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVT------------------------VST------FQSEGPRPVMVSRSRAGFTLNIVDT   50 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~------------------------~~~------~~~~t~~~~~~~~~~~g~~v~iiDT   50 (265)
                      +|..|+|||||+.+|+......                        ..+      ..+.|.........+++..+.++||
T Consensus         5 ~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~liDt   84 (219)
T cd01883           5 IGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFTILDA   84 (219)
T ss_pred             ecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEEEEEC
Confidence            6999999999999997431100                        000      1244555556677789999999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCc------CCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           51 PGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVY------RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~------r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ||..+       ....+...+  ..+|++++|++....      .........+... ...+.   +|+++|+||+|+.
T Consensus        85 pG~~~-------~~~~~~~~~--~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~iiivvNK~Dl~  150 (219)
T cd01883          85 PGHRD-------FVPNMITGA--SQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTLGV---KQLIVAVNKMDDV  150 (219)
T ss_pred             CChHH-------HHHHHHHHh--hhCCEEEEEEECCCCccccccccccchHHHHHHH-HHcCC---CeEEEEEEccccc
Confidence            99732       112222211  378999999766542      1112233333333 22321   6899999999985

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PRK12735 elongation factor Tu; Reviewed

Probab=99.17  E-value=9.8e-10  Score=101.29  Aligned_cols=108  Identities=13%  Similarity=0.079  Sum_probs=67.9

Q ss_pred             CCCCCCCHHHHHHHHhCC------Ccccc-c--------CCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHH
Q 024586            1 MGKGGVGKSSTVNSIIGE------KAVTV-S--------TFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQ   65 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~------~~~~~-~--------~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~   65 (265)
                      +|..++|||||+|+|++.      ..+.. .        ...+.|........+.++.++.++||||..       ++..
T Consensus        18 iGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~-------~f~~   90 (396)
T PRK12735         18 IGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA-------DYVK   90 (396)
T ss_pred             ECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH-------HHHH
Confidence            599999999999999972      10000 0        012334444344455667889999999972       3333


Q ss_pred             HHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCc-EEEEEeCccCC
Q 024586           66 LIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR-ALIVLTHAQLS  123 (265)
Q Consensus        66 ~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~-~ivV~tk~D~~  123 (265)
                      .+...+  ..+|++++|++.+. .....+.+.+..+... |    .+ +++|+||+|+.
T Consensus        91 ~~~~~~--~~aD~~llVvda~~-g~~~qt~e~l~~~~~~-g----i~~iivvvNK~Dl~  141 (396)
T PRK12735         91 NMITGA--AQMDGAILVVSAAD-GPMPQTREHILLARQV-G----VPYIVVFLNKCDMV  141 (396)
T ss_pred             HHHhhh--ccCCEEEEEEECCC-CCchhHHHHHHHHHHc-C----CCeEEEEEEecCCc
Confidence            333222  37899999976653 2555666666555433 2    45 45689999985

>PRK00049 elongation factor Tu; Reviewed

Probab=99.16  E-value=8.8e-10  Score=101.56  Aligned_cols=167  Identities=11%  Similarity=0.061  Sum_probs=95.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcc------cc---------cCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHH
Q 024586            1 MGKGGVGKSSTVNSIIGEKAV------TV---------STFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQ   65 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~------~~---------~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~   65 (265)
                      +|..++|||||+++|++....      ..         ....+.|........+.++.++.++||||..       ++..
T Consensus        18 iGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~-------~f~~   90 (396)
T PRK00049         18 IGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA-------DYVK   90 (396)
T ss_pred             EeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH-------HHHH
Confidence            589999999999999973110      00         0012344444444455577889999999973       3333


Q ss_pred             HHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEE-EEEeCccCCCCCCCCHHHHHhhchHHHHHH
Q 024586           66 LIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRAL-IVLTHAQLSLPDRLDYEVFCSKRSEALLKF  144 (265)
Q Consensus        66 ~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~i-vV~tk~D~~~~~~~~~~~~~~~~~~~l~~~  144 (265)
                      .+...+  ..+|++++|++.+. .....+...+..+....     .|.+ +++||+|+.+ ++    +..+.....+.++
T Consensus        91 ~~~~~~--~~aD~~llVVDa~~-g~~~qt~~~~~~~~~~g-----~p~iiVvvNK~D~~~-~~----~~~~~~~~~i~~~  157 (396)
T PRK00049         91 NMITGA--AQMDGAILVVSAAD-GPMPQTREHILLARQVG-----VPYIVVFLNKCDMVD-DE----ELLELVEMEVREL  157 (396)
T ss_pred             HHHhhh--ccCCEEEEEEECCC-CCchHHHHHHHHHHHcC-----CCEEEEEEeecCCcc-hH----HHHHHHHHHHHHH
Confidence            333322  47899999976553 36677777777666542     5654 6899999852 11    1111112345555


Q ss_pred             HhccccccccccccCCchhHhhhcCCcCCCCccccccCCCCCCC---hHHHHHHHHHHhh
Q 024586          145 VSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAW---IPNLVKTITEVVL  201 (265)
Q Consensus       145 i~~~~~~~~~~~~~~~ip~~~~~n~~~~~~~~~~~~~lp~~~~W---~~~L~~~i~~~~~  201 (265)
                      +...+ +..     ..+|++.+++..    +..    -.....|   ++.|++.+.+.++
T Consensus       158 l~~~~-~~~-----~~~~iv~iSa~~----g~~----~~~~~~w~~~~~~ll~~l~~~~~  203 (396)
T PRK00049        158 LSKYD-FPG-----DDTPIIRGSALK----ALE----GDDDEEWEKKILELMDAVDSYIP  203 (396)
T ss_pred             HHhcC-CCc-----cCCcEEEeeccc----ccC----CCCcccccccHHHHHHHHHhcCC
Confidence            54432 111     125555444321    110    0123457   4688888888664

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.16  E-value=1.2e-10  Score=91.49  Aligned_cols=96  Identities=19%  Similarity=0.268  Sum_probs=58.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+|||||||+|+|.+....    .. .|.     ...+.+   .+|||||...   ........+...  .+++|+++
T Consensus         6 iG~~~vGKSsL~~~l~~~~~~----~~-~t~-----~~~~~~---~~iDt~G~~~---~~~~~~~~~~~~--~~~ad~vi   67 (142)
T TIGR02528         6 IGSVGCGKTTLTQALQGEEIL----YK-KTQ-----AVEYND---GAIDTPGEYV---ENRRLYSALIVT--AADADVIA   67 (142)
T ss_pred             ECCCCCCHHHHHHHHcCCccc----cc-cce-----eEEEcC---eeecCchhhh---hhHHHHHHHHHH--hhcCCEEE
Confidence            699999999999999988631    11 111     222222   6899999731   112222222221  25899999


Q ss_pred             EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|++++... +..+..+++    ..+    +|+++|+||+|+.
T Consensus        68 lv~d~~~~~-s~~~~~~~~----~~~----~p~ilv~NK~Dl~  101 (142)
T TIGR02528        68 LVQSATDPE-SRFPPGFAS----IFV----KPVIGLVTKIDLA  101 (142)
T ss_pred             EEecCCCCC-cCCChhHHH----hcc----CCeEEEEEeeccC
Confidence            998776432 112222322    222    5899999999985

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.16  E-value=1.1e-09  Score=100.82  Aligned_cols=109  Identities=13%  Similarity=0.072  Sum_probs=69.2

Q ss_pred             CCCCCCCHHHHHHHHhCC------Cccc---c------cCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHH
Q 024586            1 MGKGGVGKSSTVNSIIGE------KAVT---V------STFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQ   65 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~------~~~~---~------~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~   65 (265)
                      +|..++|||||+++|++.      ..+.   .      ....+.|........+.++.++++|||||..       ++..
T Consensus        18 ~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~-------~f~~   90 (394)
T TIGR00485        18 IGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHA-------DYVK   90 (394)
T ss_pred             EeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchH-------HHHH
Confidence            588999999999999853      1110   0      0113455555445555667889999999973       2222


Q ss_pred             HHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           66 LIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        66 ~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      .+...+  ..+|++++|++.+. .....+.+.+..+... +.   +++++|+||+|+.
T Consensus        91 ~~~~~~--~~~D~~ilVvda~~-g~~~qt~e~l~~~~~~-gi---~~iIvvvNK~Dl~  141 (394)
T TIGR00485        91 NMITGA--AQMDGAILVVSATD-GPMPQTREHILLARQV-GV---PYIVVFLNKCDMV  141 (394)
T ss_pred             HHHHHH--hhCCEEEEEEECCC-CCcHHHHHHHHHHHHc-CC---CEEEEEEEecccC
Confidence            332222  37899999976653 2556666677666544 21   3455789999985

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.15  E-value=1.1e-10  Score=102.01  Aligned_cols=79  Identities=24%  Similarity=0.396  Sum_probs=64.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCc----HHHHHHHHHHHhcCCc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN----YHAIQLIKRFLLNKTI   76 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~----~~~~~~i~~~l~~~~~   76 (265)
                      ||.+++|||||+|.|+|.+. .+++++.+|..+.....+++|.++.++|+||+.++....    .+.+..++      .+
T Consensus        69 VGfPsvGKStLL~~LTnt~s-eva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R------~A  141 (365)
T COG1163          69 VGFPSVGKSTLLNKLTNTKS-EVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVAR------NA  141 (365)
T ss_pred             EcCCCccHHHHHHHHhCCCc-cccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeec------cC
Confidence            69999999999999999885 788899999999999999999999999999998865433    23444443      67


Q ss_pred             cEEEEEEecC
Q 024586           77 DVLLYVDRLD   86 (265)
Q Consensus        77 d~iL~V~~~d   86 (265)
                      |++++|.++.
T Consensus       142 DlIiiVld~~  151 (365)
T COG1163         142 DLIIIVLDVF  151 (365)
T ss_pred             CEEEEEEecC
Confidence            8888885544

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.15  E-value=1.9e-09  Score=104.27  Aligned_cols=109  Identities=19%  Similarity=0.137  Sum_probs=69.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccc--cCCCCCCCccEEEEe-eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTV--STFQSEGPRPVMVSR-SRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~--~~~~~~t~~~~~~~~-~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (265)
                      +|..++|||||+|+|.|.+....  ....+.|........ ..++..+.+|||||..       .+...+...+  .++|
T Consensus         6 ~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe-------~fi~~m~~g~--~~~D   76 (614)
T PRK10512          6 AGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHE-------KFLSNMLAGV--GGID   76 (614)
T ss_pred             ECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHH-------HHHHHHHHHh--hcCC
Confidence            59999999999999998642111  111233332222222 2257789999999972       2333333222  4789


Q ss_pred             EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ++++|++.+. .....+.+.+..+.. .|.   +++++|+||+|+.
T Consensus        77 ~~lLVVda~e-g~~~qT~ehl~il~~-lgi---~~iIVVlNKiDlv  117 (614)
T PRK10512         77 HALLVVACDD-GVMAQTREHLAILQL-TGN---PMLTVALTKADRV  117 (614)
T ss_pred             EEEEEEECCC-CCcHHHHHHHHHHHH-cCC---CeEEEEEECCccC
Confidence            9999977664 356677777765544 331   4568999999985

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.13  E-value=2.8e-10  Score=94.90  Aligned_cols=120  Identities=22%  Similarity=0.202  Sum_probs=83.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||+|...+++..  ++..+.++..........++|.  .+.|+||+|..+....        +. +.....|+
T Consensus         9 lG~~gVGKSal~~qf~~~~--f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~--------~~-~~~~~~~g   77 (196)
T KOG0395|consen    9 LGAGGVGKSALTIQFLTGR--FVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAM--------RD-LYIRNGDG   77 (196)
T ss_pred             ECCCCCCcchheeeecccc--cccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHH--------HH-HhhccCcE
Confidence            6999999999999999987  4555666655555566666665  4689999995333211        11 12236799


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHHH
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEV  132 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~~  132 (265)
                      +++|+++++....+....+.+.|.+..+.. +.|+++|+||+|+...+..+.++
T Consensus        78 F~lVysitd~~SF~~~~~l~~~I~r~~~~~-~~PivlVGNK~Dl~~~R~V~~ee  130 (196)
T KOG0395|consen   78 FLLVYSITDRSSFEEAKQLREQILRVKGRD-DVPIILVGNKCDLERERQVSEEE  130 (196)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhCcC-CCCEEEEEEcccchhccccCHHH
Confidence            999999997544455566777775555543 27999999999996545555544

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.13  E-value=1.9e-09  Score=103.81  Aligned_cols=108  Identities=15%  Similarity=0.147  Sum_probs=72.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCccccc---------------CCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHH
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVS---------------TFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQ   65 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~---------------~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~   65 (265)
                      +|..++|||||+++|+........               ...+.|.........+++..+++|||||..+.       ..
T Consensus         7 iGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF-------~~   79 (594)
T TIGR01394         7 IAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADF-------GG   79 (594)
T ss_pred             EcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHH-------HH
Confidence            689999999999999964211100               01134444455667888999999999998542       22


Q ss_pred             HHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           66 LIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        66 ~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      .+.+++  ..+|++++|++... ........++..+....     .|.++|+||+|+.
T Consensus        80 ev~~~l--~~aD~alLVVDa~~-G~~~qT~~~l~~a~~~~-----ip~IVviNKiD~~  129 (594)
T TIGR01394        80 EVERVL--GMVDGVLLLVDASE-GPMPQTRFVLKKALELG-----LKPIVVINKIDRP  129 (594)
T ss_pred             HHHHHH--HhCCEEEEEEeCCC-CCcHHHHHHHHHHHHCC-----CCEEEEEECCCCC
Confidence            333333  27799999976653 34556666776665532     7889999999984

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PRK10218 GTP-binding protein; Provisional

Probab=99.12  E-value=1.7e-09  Score=104.24  Aligned_cols=108  Identities=17%  Similarity=0.184  Sum_probs=70.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccC---------------CCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHH
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVST---------------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQ   65 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~---------------~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~   65 (265)
                      +|..++|||||+++|++........               ..+.|.........+++..+++|||||..+...   .   
T Consensus        11 iGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~---~---   84 (607)
T PRK10218         11 IAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG---E---   84 (607)
T ss_pred             ECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH---H---
Confidence            5999999999999999743211111               112233333445667889999999999865321   2   


Q ss_pred             HHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           66 LIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        66 ~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                       +..++  ..+|++++|++... .........+..+....     .|.++|+||+|..
T Consensus        85 -v~~~l--~~aDg~ILVVDa~~-G~~~qt~~~l~~a~~~g-----ip~IVviNKiD~~  133 (607)
T PRK10218         85 -VERVM--SMVDSVLLVVDAFD-GPMPQTRFVTKKAFAYG-----LKPIVVINKVDRP  133 (607)
T ss_pred             -HHHHH--HhCCEEEEEEeccc-CccHHHHHHHHHHHHcC-----CCEEEEEECcCCC
Confidence             22222  37899999976653 34555666666555432     7889999999984

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.12  E-value=6.6e-10  Score=106.76  Aligned_cols=107  Identities=17%  Similarity=0.102  Sum_probs=70.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe-EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF-TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVL   79 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~-~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~i   79 (265)
                      +|.+++|||||+|+|.+..+.. ....+.|.+...+...+++. .+++|||||..+..       ....+.  ...+|++
T Consensus        93 ~Ghvd~GKTSLl~~l~~~~v~~-~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~-------~~r~rg--a~~aDia  162 (587)
T TIGR00487        93 MGHVDHGKTSLLDSIRKTKVAQ-GEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFT-------SMRARG--AKVTDIV  162 (587)
T ss_pred             ECCCCCCHHHHHHHHHhCCccc-ccCCceeecceEEEEEECCCcEEEEEECCCCcchh-------hHHHhh--hccCCEE
Confidence            6999999999999999976532 33344555544455556444 89999999975322       111111  2478999


Q ss_pred             EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ++|++.+. .........+......     ..|+++++||+|+.
T Consensus       163 ILVVda~d-gv~~qT~e~i~~~~~~-----~vPiIVviNKiDl~  200 (587)
T TIGR00487       163 VLVVAADD-GVMPQTIEAISHAKAA-----NVPIIVAINKIDKP  200 (587)
T ss_pred             EEEEECCC-CCCHhHHHHHHHHHHc-----CCCEEEEEECcccc
Confidence            99987664 2334444444433322     27899999999984

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.12  E-value=1.5e-09  Score=92.49  Aligned_cols=72  Identities=13%  Similarity=0.073  Sum_probs=52.6

Q ss_pred             eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEe
Q 024586           39 SRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLT  118 (265)
Q Consensus        39 ~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~t  118 (265)
                      +..+..++++||||..       .+...+.+.+....+|++++|++.+. .....+..++..+....     .|+++|+|
T Consensus        80 ~~~~~~i~liDtpG~~-------~~~~~~~~~~~~~~~D~~llVvda~~-g~~~~d~~~l~~l~~~~-----ip~ivvvN  146 (224)
T cd04165          80 EKSSKLVTFIDLAGHE-------RYLKTTLFGLTGYAPDYAMLVVAANA-GIIGMTKEHLGLALALN-----IPVFVVVT  146 (224)
T ss_pred             eeCCcEEEEEECCCcH-------HHHHHHHHhhcccCCCEEEEEEECCC-CCcHHHHHHHHHHHHcC-----CCEEEEEE
Confidence            4557889999999973       33334443443346899999976653 46788888888877654     78999999


Q ss_pred             CccCC
Q 024586          119 HAQLS  123 (265)
Q Consensus       119 k~D~~  123 (265)
                      |+|+.
T Consensus       147 K~D~~  151 (224)
T cd04165         147 KIDLA  151 (224)
T ss_pred             Ccccc
Confidence            99985

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>PLN00023 GTP-binding protein; Provisional

Probab=99.10  E-value=7.9e-10  Score=98.14  Aligned_cols=113  Identities=16%  Similarity=0.157  Sum_probs=69.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCC-CccEEEEeeeC---------------CeEEEEEeCCCCCCCCCCcHHHH
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEG-PRPVMVSRSRA---------------GFTLNIVDTPGLIEGGYVNYHAI   64 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t-~~~~~~~~~~~---------------g~~v~iiDTPG~~~~~~~~~~~~   64 (265)
                      +|.+|||||||++.+.+...  .....++. .........++               ...+.||||+|.....       
T Consensus        27 LGdsGVGKTSLI~rf~~g~F--~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr-------   97 (334)
T PLN00023         27 VGDSGVGKSSLVHLIVKGSS--IARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK-------   97 (334)
T ss_pred             ECCCCCcHHHHHHHHhcCCc--ccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh-------
Confidence            69999999999999998763  22222221 11112222332               2458999999974321       


Q ss_pred             HHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCc----------CcCCcEEEEEeCccCCC
Q 024586           65 QLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGE----------QIWKRALIVLTHAQLSL  124 (265)
Q Consensus        65 ~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~----------~~~~~~ivV~tk~D~~~  124 (265)
                      .....++  .++|++|+|++++.......-..+++.+....+.          ....++++|.||+|+..
T Consensus        98 sL~~~yy--r~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~  165 (334)
T PLN00023         98 DCRSLFY--SQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP  165 (334)
T ss_pred             hhhHHhc--cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence            1111122  4899999999888644233345677777765321          11268999999999954

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.08  E-value=2.4e-09  Score=88.29  Aligned_cols=117  Identities=15%  Similarity=0.166  Sum_probs=81.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeE--EEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFT--LNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~--v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||+++-.+..... ..+....-.........+.+|..  +.+|||.|...       .......+.  ++++.
T Consensus        18 iGDs~vGKt~~l~rf~d~~f-~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQer-------f~ti~~sYy--rgA~g   87 (207)
T KOG0078|consen   18 IGDSGVGKTCLLLRFSDDSF-NTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQER-------FRTITTAYY--RGAMG   87 (207)
T ss_pred             ECCCCCchhHhhhhhhhccC-cCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchh-------HHHHHHHHH--hhcCe
Confidence            69999999999999887753 22222112233444456667764  58999999843       223333333  48999


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD  129 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~  129 (265)
                      +++|+++......+....|++.+.+.-.+.  .+.++|.||+|+...+..+
T Consensus        88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~--v~~~LvGNK~D~~~~R~V~  136 (207)
T KOG0078|consen   88 ILLVYDITNEKSFENIRNWIKNIDEHASDD--VVKILVGNKCDLEEKRQVS  136 (207)
T ss_pred             eEEEEEccchHHHHHHHHHHHHHHhhCCCC--CcEEEeecccccccccccc
Confidence            999999987665555667999999987665  7899999999996544433

>cd01900 YchF YchF subfamily

Probab=99.08  E-value=4.7e-10  Score=98.03  Aligned_cols=81  Identities=25%  Similarity=0.316  Sum_probs=61.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe-----------------EEEEEeCCCCCCCCCCcHHH
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF-----------------TLNIVDTPGLIEGGYVNYHA   63 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~-----------------~v~iiDTPG~~~~~~~~~~~   63 (265)
                      ||.++||||||+|+|++.+. .+++++++|..+......+.+.                 ++.++||||+..+....+. 
T Consensus         4 vG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~g-   81 (274)
T cd01900           4 VGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEG-   81 (274)
T ss_pred             eCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhhH-
Confidence            69999999999999999987 7888899998888777666553                 4899999999875443321 


Q ss_pred             HHHHHHHHhc-CCccEEEEEEec
Q 024586           64 IQLIKRFLLN-KTIDVLLYVDRL   85 (265)
Q Consensus        64 ~~~i~~~l~~-~~~d~iL~V~~~   85 (265)
                        ...+++.. ..+|++++|++.
T Consensus        82 --lg~~fL~~i~~~D~li~VV~~  102 (274)
T cd01900          82 --LGNKFLSHIREVDAIAHVVRC  102 (274)
T ss_pred             --HHHHHHHHHHhCCEEEEEEeC
Confidence              11223322 478999999765

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.08  E-value=1.9e-09  Score=105.91  Aligned_cols=108  Identities=15%  Similarity=0.108  Sum_probs=73.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCccc-----ccC------------CCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVT-----VST------------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA   63 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~-----~~~------------~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~   63 (265)
                      +|..++|||||+|+|++.....     +.+            ..+.|........++++.++++|||||+.+..   .+.
T Consensus        16 iG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~---~~~   92 (689)
T TIGR00484        16 SAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFT---VEV   92 (689)
T ss_pred             ECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchh---HHH
Confidence            6999999999999998532111     111            12344555566778899999999999996532   122


Q ss_pred             HHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           64 IQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        64 ~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ...++      .+|++++|++... .....+..++..+.+..     .|+++|+||+|+.
T Consensus        93 ~~~l~------~~D~~ilVvda~~-g~~~~~~~~~~~~~~~~-----~p~ivviNK~D~~  140 (689)
T TIGR00484        93 ERSLR------VLDGAVAVLDAVG-GVQPQSETVWRQANRYE-----VPRIAFVNKMDKT  140 (689)
T ss_pred             HHHHH------HhCEEEEEEeCCC-CCChhHHHHHHHHHHcC-----CCEEEEEECCCCC
Confidence            22222      6799999976553 35566667777665542     7899999999985

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PRK12739 elongation factor G; Reviewed

Probab=99.07  E-value=1.6e-09  Score=106.49  Aligned_cols=108  Identities=18%  Similarity=0.167  Sum_probs=75.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCc-----ccccC------------CCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH
Q 024586            1 MGKGGVGKSSTVNSIIGEKA-----VTVST------------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA   63 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~-----~~~~~------------~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~   63 (265)
                      +|..++|||||+|+|+....     ..+..            ..+.|........++++.+++++||||+.+       .
T Consensus        14 iGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~-------f   86 (691)
T PRK12739         14 MAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD-------F   86 (691)
T ss_pred             ECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH-------H
Confidence            69999999999999985321     11111            234555666667788999999999999843       1


Q ss_pred             HHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           64 IQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        64 ~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ..++.+.+  ..+|++++|++... .....+..++..+.+..     +|.|+++||+|+.
T Consensus        87 ~~e~~~al--~~~D~~ilVvDa~~-g~~~qt~~i~~~~~~~~-----~p~iv~iNK~D~~  138 (691)
T PRK12739         87 TIEVERSL--RVLDGAVAVFDAVS-GVEPQSETVWRQADKYG-----VPRIVFVNKMDRI  138 (691)
T ss_pred             HHHHHHHH--HHhCeEEEEEeCCC-CCCHHHHHHHHHHHHcC-----CCEEEEEECCCCC
Confidence            12233322  26799999966543 36777778887776543     7889999999985

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.07  E-value=1.6e-09  Score=105.97  Aligned_cols=107  Identities=12%  Similarity=0.090  Sum_probs=68.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeee----CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR----AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI   76 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~----~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~   76 (265)
                      +|.+|+|||||+++|.+..... +...+.|.....+...+    .+..+++|||||..       .+.....+.+  ..+
T Consensus       250 vGhvdvGKTSLld~L~~~~~~~-~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe-------~F~~mr~rg~--~~a  319 (742)
T CHL00189        250 LGHVDHGKTTLLDKIRKTQIAQ-KEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHE-------AFSSMRSRGA--NVT  319 (742)
T ss_pred             ECCCCCCHHHHHHHHHhccCcc-ccCCccccccceEEEEEEecCCceEEEEEECCcHH-------HHHHHHHHHH--HHC
Confidence            6999999999999999876532 22233343333333333    35889999999973       2222222222  378


Q ss_pred             cEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           77 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        77 d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      |++++|++.+. .......+.+..+...     ..|+|+|+||+|+.
T Consensus       320 DiaILVVDA~d-Gv~~QT~E~I~~~k~~-----~iPiIVViNKiDl~  360 (742)
T CHL00189        320 DIAILIIAADD-GVKPQTIEAINYIQAA-----NVPIIVAINKIDKA  360 (742)
T ss_pred             CEEEEEEECcC-CCChhhHHHHHHHHhc-----CceEEEEEECCCcc
Confidence            99999987664 3444445555544332     27999999999984

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=99.05  E-value=2.4e-09  Score=83.38  Aligned_cols=110  Identities=20%  Similarity=0.171  Sum_probs=77.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHH-HHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLI-KRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i-~~~l~~~~~d   77 (265)
                      +|.+|+|||||+-.+..... ..+-....+.+.......++|.  ++.||||.|.        +.+..| ..+.  .+.|
T Consensus        14 igDsgVGKssLl~rF~ddtF-s~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGq--------ErFrtitstyy--rgth   82 (198)
T KOG0079|consen   14 IGDSGVGKSSLLLRFADDTF-SGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQ--------ERFRTITSTYY--RGTH   82 (198)
T ss_pred             ecCCcccHHHHHHHHhhccc-ccceEEEeeeeEEEEEeecCCcEEEEEEeecccH--------HHHHHHHHHHc--cCCc
Confidence            68999999999988776642 2222222233444455566665  5689999997        333333 3333  4889


Q ss_pred             EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      ++++|+++........-..|++.+...+..   .+-++|.||.|+..
T Consensus        83 gv~vVYDVTn~ESF~Nv~rWLeei~~ncds---v~~vLVGNK~d~~~  126 (198)
T KOG0079|consen   83 GVIVVYDVTNGESFNNVKRWLEEIRNNCDS---VPKVLVGNKNDDPE  126 (198)
T ss_pred             eEEEEEECcchhhhHhHHHHHHHHHhcCcc---ccceecccCCCCcc
Confidence            999999998766556778999999987764   67899999999853

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.04  E-value=2.9e-09  Score=89.68  Aligned_cols=110  Identities=19%  Similarity=0.221  Sum_probs=71.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEE-EeeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMV-SRSRA--GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~-~~~~~--g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (265)
                      +|..|||||||+|+|.+........  ++....... .....  ...+.+|||+|..+.       ......+.  .+++
T Consensus        11 ~G~~g~GKTtl~~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~-------~~~~~~y~--~~~~   79 (219)
T COG1100          11 LGDGGVGKTTLLNRLVGDEFPEGYP--PTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEY-------RSLRPEYY--RGAN   79 (219)
T ss_pred             EcCCCccHHHHHHHHhcCcCcccCC--CceeeeeEEEEEEeCCCEEEEEeecCCCHHHH-------HHHHHHHh--cCCC
Confidence            5999999999999999987532222  121111111 11112  456899999998422       12222221  4889


Q ss_pred             EEEEEEecCC-cCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           78 VLLYVDRLDV-YRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        78 ~iL~V~~~d~-~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ++++|++... .++...-..+.+.+....+..  .++++|.||+|+.
T Consensus        80 ~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~--~~iilv~nK~Dl~  124 (219)
T COG1100          80 GILIVYDSTLRESSDELTEEWLEELRELAPDD--VPILLVGNKIDLF  124 (219)
T ss_pred             EEEEEEecccchhhhHHHHHHHHHHHHhCCCC--ceEEEEecccccc
Confidence            9999977665 446666677777777766432  7999999999995

>PRK00007 elongation factor G; Reviewed

Probab=99.04  E-value=2.7e-09  Score=104.93  Aligned_cols=108  Identities=17%  Similarity=0.132  Sum_probs=75.0

Q ss_pred             CCCCCCCHHHHHHHHhC---CCc--cccc------------CCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH
Q 024586            1 MGKGGVGKSSTVNSIIG---EKA--VTVS------------TFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA   63 (265)
Q Consensus         1 vG~tg~GKSSliN~llg---~~~--~~~~------------~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~   63 (265)
                      +|..++|||||+|+|+.   ...  ..+.            ...+.|.........+.+..++++||||+.+.       
T Consensus        16 iG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f-------   88 (693)
T PRK00007         16 MAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDF-------   88 (693)
T ss_pred             ECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHH-------
Confidence            69999999999999983   211  0111            12234555555677888999999999997431       


Q ss_pred             HHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           64 IQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        64 ~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ..++.+.+  ..+|++++|++... .....+..++..+.+..     +|.++++||+|+.
T Consensus        89 ~~ev~~al--~~~D~~vlVvda~~-g~~~qt~~~~~~~~~~~-----~p~iv~vNK~D~~  140 (693)
T PRK00007         89 TIEVERSL--RVLDGAVAVFDAVG-GVEPQSETVWRQADKYK-----VPRIAFVNKMDRT  140 (693)
T ss_pred             HHHHHHHH--HHcCEEEEEEECCC-CcchhhHHHHHHHHHcC-----CCEEEEEECCCCC
Confidence            11222222  36799999966442 36778888888777654     7889999999985

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=99.03  E-value=1e-09  Score=86.56  Aligned_cols=121  Identities=16%  Similarity=0.057  Sum_probs=77.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      ||.+|||||||+-++.....-...+. ....+.......++|.  ++.||||.|..........+       .  +++..
T Consensus        17 IGeSGVGKSSLllrFv~~~fd~~~~~-tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSy-------y--RgaqG   86 (209)
T KOG0080|consen   17 IGESGVGKSSLLLRFVSNTFDDLHPT-TIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSY-------Y--RGAQG   86 (209)
T ss_pred             EccCCccHHHHHHHHHhcccCccCCc-eeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhH-------h--ccCce
Confidence            69999999999999988754222211 1123444556667765  56899999985443322211       1  48899


Q ss_pred             EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHHHH
Q 024586           79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVF  133 (265)
Q Consensus        79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~~~  133 (265)
                      +++|+++.... |... ..|++++.-..... ..-.++|.||.|....+..+.++-
T Consensus        87 iIlVYDVT~Rdtf~kL-d~W~~Eld~Ystn~-diikmlVgNKiDkes~R~V~reEG  140 (209)
T KOG0080|consen   87 IILVYDVTSRDTFVKL-DIWLKELDLYSTNP-DIIKMLVGNKIDKESERVVDREEG  140 (209)
T ss_pred             eEEEEEccchhhHHhH-HHHHHHHHhhcCCc-cHhHhhhcccccchhcccccHHHH
Confidence            99999988633 5555 46777776654431 133578999999754444444443

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.03  E-value=6.6e-10  Score=87.39  Aligned_cols=94  Identities=22%  Similarity=0.288  Sum_probs=56.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      ||++|+|||||+++|.|.+.    .+ .-|.     ...+.+   .+|||||=+-   .+..+...+-.  .+..+|+|+
T Consensus         7 iG~~g~GKTTL~q~L~~~~~----~~-~KTq-----~i~~~~---~~IDTPGEyi---E~~~~y~aLi~--ta~dad~V~   68 (143)
T PF10662_consen    7 IGPSGSGKTTLAQALNGEEI----RY-KKTQ-----AIEYYD---NTIDTPGEYI---ENPRFYHALIV--TAQDADVVL   68 (143)
T ss_pred             ECCCCCCHHHHHHHHcCCCC----Cc-Cccc-----eeEecc---cEEECChhhe---eCHHHHHHHHH--HHhhCCEEE
Confidence            69999999999999999763    11 1121     222222   2699999431   11222222211  224889999


Q ss_pred             EEEecCCcC--CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           81 YVDRLDVYR--VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~~r--~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|.+.+...  +...       +...|    .+|+|-|+||+|+.
T Consensus        69 ll~dat~~~~~~pP~-------fa~~f----~~pvIGVITK~Dl~  102 (143)
T PF10662_consen   69 LLQDATEPRSVFPPG-------FASMF----NKPVIGVITKIDLP  102 (143)
T ss_pred             EEecCCCCCccCCch-------hhccc----CCCEEEEEECccCc
Confidence            996665422  2222       22333    38999999999995

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.02  E-value=1.1e-09  Score=90.07  Aligned_cols=118  Identities=16%  Similarity=0.084  Sum_probs=80.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeE--EEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFT--LNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~--v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||-|+-.+...+....+ ......+.......++|+.  ..||||.|.....        .+.... -+++..
T Consensus        20 iGDS~VGKsnLlsRftrnEF~~~S-ksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyr--------AitSaY-YrgAvG   89 (222)
T KOG0087|consen   20 IGDSAVGKSNLLSRFTRNEFSLES-KSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYR--------AITSAY-YRGAVG   89 (222)
T ss_pred             eCCCccchhHHHHHhcccccCccc-ccceeEEEEeeceeecCcEEEEeeecccchhhhc--------cccchh-hcccce
Confidence            699999999999988876642222 2222334444556677765  4899999984322        221111 048899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCH
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY  130 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~  130 (265)
                      .|+|+++....-.+.-..|+++|.....++  ..+++|.||+||...+....
T Consensus        90 AllVYDITr~~Tfenv~rWL~ELRdhad~n--ivimLvGNK~DL~~lraV~t  139 (222)
T KOG0087|consen   90 ALLVYDITRRQTFENVERWLKELRDHADSN--IVIMLVGNKSDLNHLRAVPT  139 (222)
T ss_pred             eEEEEechhHHHHHHHHHHHHHHHhcCCCC--eEEEEeecchhhhhccccch
Confidence            999999875333346678999999988765  78999999999975544443

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.01  E-value=2.3e-09  Score=97.27  Aligned_cols=116  Identities=14%  Similarity=0.206  Sum_probs=77.8

Q ss_pred             CCCCCCCHHHHHHHHhCC----Ccc-----------cccCCCC---CCCccEE---EEeeeC-----CeEEEEEeCCCCC
Q 024586            1 MGKGGVGKSSTVNSIIGE----KAV-----------TVSTFQS---EGPRPVM---VSRSRA-----GFTLNIVDTPGLI   54 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~----~~~-----------~~~~~~~---~t~~~~~---~~~~~~-----g~~v~iiDTPG~~   54 (265)
                      +|+.++|||||||++.+.    +..           .+++.++   +|++|..   ...++.     ..+++++||+|+.
T Consensus        23 vGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlIDcvG~~  102 (492)
T TIGR02836        23 VGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLVDCVGYT  102 (492)
T ss_pred             EcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEEECCCcc
Confidence            699999999999999998    554           4555666   6777766   333321     2478999999998


Q ss_pred             CCCCCcH----H-----------------HHHH-HHHHHhcCCccEEEEEE-ecC-----CcCCCHHHHHHHHHHHHhcC
Q 024586           55 EGGYVNY----H-----------------AIQL-IKRFLLNKTIDVLLYVD-RLD-----VYRVDNLDKQITRAITDNFG  106 (265)
Q Consensus        55 ~~~~~~~----~-----------------~~~~-i~~~l~~~~~d~iL~V~-~~d-----~~r~~~~d~~~l~~l~~~~g  106 (265)
                      +.+....    .                 +.+. .++.+ ...+|..|+|. +.+     .....+.+..+++.|++.. 
T Consensus       103 v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI-~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~~~-  180 (492)
T TIGR02836       103 VKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVI-QEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELKELN-  180 (492)
T ss_pred             cCCCccceeccccccccCCcccccCchhhhhhhhHHHHH-HhcCcEEEEEEcCCCccccccccchHHHHHHHHHHHhcC-
Confidence            7653221    1                 0000 11111 13678888884 221     1236677888999998876 


Q ss_pred             cCcCCcEEEEEeCccC
Q 024586          107 EQIWKRALIVLTHAQL  122 (265)
Q Consensus       107 ~~~~~~~ivV~tk~D~  122 (265)
                          +|+++|+|+.|-
T Consensus       181 ----kPfiivlN~~dp  192 (492)
T TIGR02836       181 ----KPFIILLNSTHP  192 (492)
T ss_pred             ----CCEEEEEECcCC
Confidence                999999999994

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.01  E-value=2.5e-09  Score=102.66  Aligned_cols=107  Identities=13%  Similarity=0.058  Sum_probs=65.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeee------------------CCeEEEEEeCCCCCCCCCCcHH
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR------------------AGFTLNIVDTPGLIEGGYVNYH   62 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~------------------~g~~v~iiDTPG~~~~~~~~~~   62 (265)
                      +|.+++|||||+|+|.+..+.. ....+.|.+........                  ....+.+|||||....      
T Consensus        10 iG~~d~GKTSLln~l~~~~v~~-~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f------   82 (590)
T TIGR00491        10 LGHVDHGKTTLLDKIRGSAVAK-REAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF------   82 (590)
T ss_pred             ECCCCCCHHHHHHHHhcccccc-ccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH------
Confidence            6999999999999999986422 11111222111111110                  1124889999997322      


Q ss_pred             HHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           63 AIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        63 ~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                       ......+.  ..+|++++|++++. .....+...+..+...     ..|+++|+||+|+.
T Consensus        83 -~~l~~~~~--~~aD~~IlVvD~~~-g~~~qt~e~i~~l~~~-----~vpiIVv~NK~Dl~  134 (590)
T TIGR00491        83 -TNLRKRGG--ALADLAILIVDINE-GFKPQTQEALNILRMY-----KTPFVVAANKIDRI  134 (590)
T ss_pred             -HHHHHHHH--hhCCEEEEEEECCc-CCCHhHHHHHHHHHHc-----CCCEEEEEECCCcc
Confidence             11112121  37899999987764 3455566666655433     27899999999985

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>PTZ00258 GTP-binding protein; Provisional

Probab=99.00  E-value=1.5e-09  Score=99.08  Aligned_cols=78  Identities=24%  Similarity=0.325  Sum_probs=60.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC-----------------eEEEEEeCCCCCCCCCCcH--
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-----------------FTLNIVDTPGLIEGGYVNY--   61 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g-----------------~~v~iiDTPG~~~~~~~~~--   61 (265)
                      ||.+|||||||+|+|.+..+ .+++++++|..+......+.+                 .++.++||||+..+....+  
T Consensus        27 VG~PNvGKSTLfnaLt~~~~-~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga~~g~gL  105 (390)
T PTZ00258         27 VGLPNVGKSTTFNALCKQQV-PAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGASEGEGL  105 (390)
T ss_pred             ECCCCCChHHHHHHHhcCcc-cccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCCcchhHH
Confidence            69999999999999998875 888899999888877766543                 2489999999986543322  


Q ss_pred             --HHHHHHHHHHhcCCccEEEEEEec
Q 024586           62 --HAIQLIKRFLLNKTIDVLLYVDRL   85 (265)
Q Consensus        62 --~~~~~i~~~l~~~~~d~iL~V~~~   85 (265)
                        ..+..+      ..+|++++|++.
T Consensus       106 g~~fL~~I------r~aD~il~VVd~  125 (390)
T PTZ00258        106 GNAFLSHI------RAVDGIYHVVRA  125 (390)
T ss_pred             HHHHHHHH------HHCCEEEEEEeC
Confidence              233333      378999999775

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.00  E-value=6.8e-09  Score=83.97  Aligned_cols=119  Identities=17%  Similarity=0.128  Sum_probs=76.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||.|+-.+.......+.+ ..-..+--....+++++  ++.||||.|..       ...+..+.+.  +++-.
T Consensus        12 iGd~gVGKSclllrf~~krF~~~hd-~TiGvefg~r~~~id~k~IKlqiwDtaGqe-------~frsv~~syY--r~a~G   81 (216)
T KOG0098|consen   12 IGDTGVGKSCLLLRFTDKRFQPVHD-LTIGVEFGARMVTIDGKQIKLQIWDTAGQE-------SFRSVTRSYY--RGAAG   81 (216)
T ss_pred             ECCCCccHHHHHHHHhccCcccccc-ceeeeeeceeEEEEcCceEEEEEEecCCcH-------HHHHHHHHHh--ccCcc
Confidence            6999999999999999987422221 00111222234455665  56999999982       2233333343  36778


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHH
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE  131 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~  131 (265)
                      .|+|++++.......-..+|..+.+...++  .-++++.||+|+...++.+-+
T Consensus        82 alLVydit~r~sF~hL~~wL~D~rq~~~~N--mvImLiGNKsDL~~rR~Vs~E  132 (216)
T KOG0098|consen   82 ALLVYDITRRESFNHLTSWLEDARQHSNEN--MVIMLIGNKSDLEARREVSKE  132 (216)
T ss_pred             eEEEEEccchhhHHHHHHHHHHHHHhcCCC--cEEEEEcchhhhhccccccHH
Confidence            899999986443334456777777765444  568899999999655554443

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.00  E-value=1.7e-09  Score=97.63  Aligned_cols=81  Identities=25%  Similarity=0.332  Sum_probs=60.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe-----------------EEEEEeCCCCCCCCCCcHHH
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF-----------------TLNIVDTPGLIEGGYVNYHA   63 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~-----------------~v~iiDTPG~~~~~~~~~~~   63 (265)
                      ||.++||||||+|+|++.. +.+++++.+|..+......+.+.                 ++.++||||+..+....+. 
T Consensus         8 VG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~g~g-   85 (364)
T PRK09601          8 VGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEG-   85 (364)
T ss_pred             ECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCChHHH-
Confidence            6999999999999999998 48888899998888766665542                 5899999999875443321 


Q ss_pred             HHHHHHHHhc-CCccEEEEEEec
Q 024586           64 IQLIKRFLLN-KTIDVLLYVDRL   85 (265)
Q Consensus        64 ~~~i~~~l~~-~~~d~iL~V~~~   85 (265)
                        .-.+++.. ..+|++++|++.
T Consensus        86 --lg~~fL~~i~~aD~li~VVd~  106 (364)
T PRK09601         86 --LGNQFLANIREVDAIVHVVRC  106 (364)
T ss_pred             --HHHHHHHHHHhCCEEEEEEeC
Confidence              11223322 488999999775

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.00  E-value=1.5e-09  Score=88.96  Aligned_cols=107  Identities=14%  Similarity=0.139  Sum_probs=68.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|..|+||||+++.|.......+    ..|.........+++..+.++|.+|-.......+.       ++  .++|+++
T Consensus        20 lGl~~sGKTtll~~l~~~~~~~~----~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~-------y~--~~~~~iI   86 (175)
T PF00025_consen   20 LGLDGSGKTTLLNRLKNGEISET----IPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKS-------YF--QNADGII   86 (175)
T ss_dssp             EESTTSSHHHHHHHHHSSSEEEE----EEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGG-------GH--TTESEEE
T ss_pred             ECCCccchHHHHHHhhhcccccc----CcccccccceeeeCcEEEEEEecccccccccccee-------ec--cccceeE
Confidence            58999999999999998653221    12344445667788999999999986322212221       11  3789999


Q ss_pred             EEEecCCcCCCHHHHHHHHHHHHhcCcC--cCCcEEEEEeCccCC
Q 024586           81 YVDRLDVYRVDNLDKQITRAITDNFGEQ--IWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~--~~~~~ivV~tk~D~~  123 (265)
                      ||++..+..   .-.+..+.+.+.....  ...|+++++||.|+.
T Consensus        87 fVvDssd~~---~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~  128 (175)
T PF00025_consen   87 FVVDSSDPE---RLQEAKEELKELLNDPELKDIPILILANKQDLP  128 (175)
T ss_dssp             EEEETTGGG---GHHHHHHHHHHHHTSGGGTTSEEEEEEESTTST
T ss_pred             EEEecccce---eecccccchhhhcchhhcccceEEEEecccccc
Confidence            997655422   1122333333433321  248999999999983

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>TIGR00503 prfC peptide chain release factor 3

Probab=98.99  E-value=8.4e-09  Score=98.13  Aligned_cols=108  Identities=13%  Similarity=0.119  Sum_probs=68.0

Q ss_pred             CCCCCCCHHHHHHHHhCCC--cccccCCC-------------------CCCCccEEEEeeeCCeEEEEEeCCCCCCCCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK--AVTVSTFQ-------------------SEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV   59 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~--~~~~~~~~-------------------~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~   59 (265)
                      +|..|+|||||+++|+-..  ....+...                   +.|.........+++..++++||||..+.   
T Consensus        17 iGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG~~df---   93 (527)
T TIGR00503        17 ISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPGHEDF---   93 (527)
T ss_pred             EcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCChhhH---
Confidence            6999999999999986321  11111100                   11122233456778999999999998432   


Q ss_pred             cHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           60 NYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        60 ~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                          ...+.+++  ..+|++|+|++... .+......+++.....     ..|+++++||+|+.
T Consensus        94 ----~~~~~~~l--~~aD~aIlVvDa~~-gv~~~t~~l~~~~~~~-----~~PiivviNKiD~~  145 (527)
T TIGR00503        94 ----SEDTYRTL--TAVDNCLMVIDAAK-GVETRTRKLMEVTRLR-----DTPIFTFMNKLDRD  145 (527)
T ss_pred             ----HHHHHHHH--HhCCEEEEEEECCC-CCCHHHHHHHHHHHhc-----CCCEEEEEECcccc
Confidence                12222222  27899999976553 3555556666544432     27999999999984

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=98.98  E-value=1.8e-09  Score=105.18  Aligned_cols=109  Identities=12%  Similarity=0.066  Sum_probs=68.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccC----------CC----------------------CCCCccEEEEeeeCCeEEEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVST----------FQ----------------------SEGPRPVMVSRSRAGFTLNIV   48 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~----------~~----------------------~~t~~~~~~~~~~~g~~v~ii   48 (265)
                      +|..++|||||+|+|+.......+.          ..                      +.|........+.++.++.++
T Consensus        30 iGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~~~~~~li  109 (632)
T PRK05506         30 CGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATPKRKFIVA  109 (632)
T ss_pred             ECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccCCceEEEE
Confidence            6999999999999999764322210          11                      122233334556678899999


Q ss_pred             eCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           49 DTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        49 DTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ||||..       ++...+...+  ..+|++++|++.+. .....+...+..+... +.   +++++|+||+|+.
T Consensus       110 DtPG~~-------~f~~~~~~~~--~~aD~~llVvda~~-g~~~~t~e~~~~~~~~-~~---~~iivvvNK~D~~  170 (632)
T PRK05506        110 DTPGHE-------QYTRNMVTGA--STADLAIILVDARK-GVLTQTRRHSFIASLL-GI---RHVVLAVNKMDLV  170 (632)
T ss_pred             ECCChH-------HHHHHHHHHH--HhCCEEEEEEECCC-CccccCHHHHHHHHHh-CC---CeEEEEEEecccc
Confidence            999963       2222222222  47899999976653 2444444444444333 32   6789999999985

>TIGR01393 lepA GTP-binding protein LepA

Probab=98.98  E-value=8.6e-09  Score=99.46  Aligned_cols=108  Identities=16%  Similarity=0.180  Sum_probs=64.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCccccc-----CC---------CCCCCccEEEEeee---CC--eEEEEEeCCCCCCCCCCcH
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVS-----TF---------QSEGPRPVMVSRSR---AG--FTLNIVDTPGLIEGGYVNY   61 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~-----~~---------~~~t~~~~~~~~~~---~g--~~v~iiDTPG~~~~~~~~~   61 (265)
                      +|..++|||||+++|+........     .+         .+.|.........+   ++  ..+++|||||..+.     
T Consensus         9 IGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF-----   83 (595)
T TIGR01393         9 IAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF-----   83 (595)
T ss_pred             ECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH-----
Confidence            699999999999999975321110     00         12233322233333   23  57899999999643     


Q ss_pred             HHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           62 HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        62 ~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                        ...+.+++  ..+|++++|++.+. ..+..+...+....+.     ..++++|+||+|+.
T Consensus        84 --~~~v~~~l--~~aD~aILVvDat~-g~~~qt~~~~~~~~~~-----~ipiIiViNKiDl~  135 (595)
T TIGR01393        84 --SYEVSRSL--AACEGALLLVDAAQ-GIEAQTLANVYLALEN-----DLEIIPVINKIDLP  135 (595)
T ss_pred             --HHHHHHHH--HhCCEEEEEecCCC-CCCHhHHHHHHHHHHc-----CCCEEEEEECcCCC
Confidence              22233333  27799999976653 2344443333322221     26899999999984

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>cd01873 RhoBTB RhoBTB subfamily

Probab=98.98  E-value=4.5e-09  Score=87.63  Aligned_cols=109  Identities=17%  Similarity=0.147  Sum_probs=64.4

Q ss_pred             CCCCCCCHHHHHH-HHhCCCcc---cccCCCCCCC--ccEEEE--------eeeCC--eEEEEEeCCCCCCCCCCcHHHH
Q 024586            1 MGKGGVGKSSTVN-SIIGEKAV---TVSTFQSEGP--RPVMVS--------RSRAG--FTLNIVDTPGLIEGGYVNYHAI   64 (265)
Q Consensus         1 vG~tg~GKSSliN-~llg~~~~---~~~~~~~~t~--~~~~~~--------~~~~g--~~v~iiDTPG~~~~~~~~~~~~   64 (265)
                      +|.+|||||||++ .+.+....   ....+.++..  ......        ..++|  ..+.+|||+|..+.        
T Consensus         8 vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--------   79 (195)
T cd01873           8 VGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--------   79 (195)
T ss_pred             ECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--------
Confidence            6999999999996 45443210   1122222221  111111        13444  36789999998431        


Q ss_pred             HHHHHHHhcCCccEEEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           65 QLIKRFLLNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        65 ~~i~~~l~~~~~d~iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                        ++. +.-+++|++++|+++++.. +......+++.+.+... .  .|+++|.||+|+.
T Consensus        80 --~~~-~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-~--~piilvgNK~DL~  133 (195)
T cd01873          80 --DRR-FAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-R--VPVILVGCKLDLR  133 (195)
T ss_pred             --hhc-ccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-C--CCEEEEEEchhcc
Confidence              011 1225899999999887633 33333346777766542 2  6899999999984

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd01882 BMS1 Bms1

Probab=98.98  E-value=1e-08  Score=87.38  Aligned_cols=100  Identities=20%  Similarity=0.282  Sum_probs=64.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCc-ccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKA-VTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVL   79 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~-~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~i   79 (265)
                      +|.+|+|||||+|+|++... ...+...+    +. ......+.++.++||||..      ...++.++      .+|++
T Consensus        45 vG~~~~GKstl~~~l~~~~~~~~~~~~~g----~i-~i~~~~~~~i~~vDtPg~~------~~~l~~ak------~aDvV  107 (225)
T cd01882          45 VGPPGVGKTTLIKSLVKNYTKQNISDIKG----PI-TVVTGKKRRLTFIECPNDI------NAMIDIAK------VADLV  107 (225)
T ss_pred             ECCCCCCHHHHHHHHHhhcccCccccccc----cE-EEEecCCceEEEEeCCchH------HHHHHHHH------hcCEE
Confidence            59999999999999998632 11111111    11 1122367889999999852      23333333      67999


Q ss_pred             EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCc-EEEEEeCccCC
Q 024586           80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR-ALIVLTHAQLS  123 (265)
Q Consensus        80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~-~ivV~tk~D~~  123 (265)
                      ++|++... .+...+..++..+....     .| +++|+||+|+.
T Consensus       108 llviDa~~-~~~~~~~~i~~~l~~~g-----~p~vi~VvnK~D~~  146 (225)
T cd01882         108 LLLIDASF-GFEMETFEFLNILQVHG-----FPRVMGVLTHLDLF  146 (225)
T ss_pred             EEEEecCc-CCCHHHHHHHHHHHHcC-----CCeEEEEEeccccC
Confidence            99966542 36666777777766532     45 45599999985

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=98.95  E-value=6.1e-09  Score=96.33  Aligned_cols=109  Identities=14%  Similarity=0.097  Sum_probs=68.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCccccc--------------------------C------CCCCCCccEEEEeeeCCeEEEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVS--------------------------T------FQSEGPRPVMVSRSRAGFTLNIV   48 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~--------------------------~------~~~~t~~~~~~~~~~~g~~v~ii   48 (265)
                      +|..++|||||+++|+........                          +      ..+.|.+......+.++.++.++
T Consensus         6 vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~~~li   85 (406)
T TIGR02034         6 CGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRKFIVA   85 (406)
T ss_pred             ECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeEEEEE
Confidence            699999999999999854321100                          0      01233444445566788899999


Q ss_pred             eCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           49 DTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        49 DTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ||||..       ++...+...+  ..+|++|+|++... .+...+.+.+..+.. .+.   +++++|+||+|+.
T Consensus        86 DtPGh~-------~f~~~~~~~~--~~aD~allVVda~~-G~~~qt~~~~~~~~~-~~~---~~iivviNK~D~~  146 (406)
T TIGR02034        86 DTPGHE-------QYTRNMATGA--STADLAVLLVDARK-GVLEQTRRHSYIASL-LGI---RHVVLAVNKMDLV  146 (406)
T ss_pred             eCCCHH-------HHHHHHHHHH--hhCCEEEEEEECCC-CCccccHHHHHHHHH-cCC---CcEEEEEEecccc
Confidence            999963       2333333222  37899999976653 244455544444433 231   5789999999985

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>cd01899 Ygr210 Ygr210 subfamily

Probab=98.94  E-value=3.2e-09  Score=94.85  Aligned_cols=79  Identities=18%  Similarity=0.246  Sum_probs=58.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeee------------------------CCeEEEEEeCCCCCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR------------------------AGFTLNIVDTPGLIEG   56 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~------------------------~g~~v~iiDTPG~~~~   56 (265)
                      ||.++||||||+|+|++... .+++++.+|..+......+                        .+.++.++||||+..+
T Consensus         4 vG~pnvGKStLfn~lt~~~~-~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv~g   82 (318)
T cd01899           4 VGKPNAGKSTFFNAATLADV-EIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLVPG   82 (318)
T ss_pred             ECCCCCCHHHHHHHHhCCCC-cccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCCCC
Confidence            69999999999999999874 7788888887776644332                        2357899999999654


Q ss_pred             CCCc----HHHHHHHHHHHhcCCccEEEEEEecC
Q 024586           57 GYVN----YHAIQLIKRFLLNKTIDVLLYVDRLD   86 (265)
Q Consensus        57 ~~~~----~~~~~~i~~~l~~~~~d~iL~V~~~d   86 (265)
                      ....    ..+++.++      .+|++++|+++.
T Consensus        83 a~~~~glg~~fL~~ir------~aD~ii~Vvd~~  110 (318)
T cd01899          83 AHEGKGLGNKFLDDLR------DADALIHVVDAS  110 (318)
T ss_pred             ccchhhHHHHHHHHHH------HCCEEEEEEeCC
Confidence            3322    13334444      789999998775

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=98.94  E-value=4.2e-09  Score=98.00  Aligned_cols=110  Identities=14%  Similarity=0.130  Sum_probs=67.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccc------------------------c------CCCCCCCccEEEEeeeCCeEEEEEeC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTV------------------------S------TFQSEGPRPVMVSRSRAGFTLNIVDT   50 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~------------------------~------~~~~~t~~~~~~~~~~~g~~v~iiDT   50 (265)
                      +|..++|||||+++|+.......                        .      ...+.|..........++..+.+|||
T Consensus        13 ~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~~i~iiDt   92 (426)
T TIGR00483        13 IGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKYEVTIVDC   92 (426)
T ss_pred             EeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCeEEEEEEC
Confidence            59999999999999995321000                        0      01234444445566677889999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCC--HHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           51 PGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVD--NLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~--~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ||..       ++...+...+  ..+|++++|++.+...+.  ......+. +.+..+.   +++++|+||+|+.
T Consensus        93 pGh~-------~f~~~~~~~~--~~aD~~ilVvDa~~~~~~~~~~t~~~~~-~~~~~~~---~~iIVviNK~Dl~  154 (426)
T TIGR00483        93 PGHR-------DFIKNMITGA--SQADAAVLVVAVGDGEFEVQPQTREHAF-LARTLGI---NQLIVAINKMDSV  154 (426)
T ss_pred             CCHH-------HHHHHHHhhh--hhCCEEEEEEECCCCCcccCCchHHHHH-HHHHcCC---CeEEEEEEChhcc
Confidence            9963       2222222222  478999999877653221  12222222 2333332   5799999999985

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>PRK13351 elongation factor G; Reviewed

Probab=98.93  E-value=1.4e-08  Score=99.92  Aligned_cols=108  Identities=18%  Similarity=0.156  Sum_probs=70.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcc--c---------ccC------CCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH
Q 024586            1 MGKGGVGKSSTVNSIIGEKAV--T---------VST------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA   63 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~--~---------~~~------~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~   63 (265)
                      +|..|+|||||+++|+.....  .         ..+      ..+.|.........+++..+.+|||||..+..      
T Consensus        14 iG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df~------   87 (687)
T PRK13351         14 LAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDFT------   87 (687)
T ss_pred             ECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHHH------
Confidence            699999999999999854210  0         000      01223334445667889999999999985421      


Q ss_pred             HHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           64 IQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        64 ~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                       ..+..++  ..+|++++|++.+. .........++.+...     ..|+++|+||+|+.
T Consensus        88 -~~~~~~l--~~aD~~ilVvd~~~-~~~~~~~~~~~~~~~~-----~~p~iiviNK~D~~  138 (687)
T PRK13351         88 -GEVERSL--RVLDGAVVVFDAVT-GVQPQTETVWRQADRY-----GIPRLIFINKMDRV  138 (687)
T ss_pred             -HHHHHHH--HhCCEEEEEEeCCC-CCCHHHHHHHHHHHhc-----CCCEEEEEECCCCC
Confidence             2222222  37799999976654 3455555666655443     27899999999984

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=98.93  E-value=9.9e-09  Score=96.63  Aligned_cols=109  Identities=17%  Similarity=0.112  Sum_probs=66.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCccccc--------------C------------------CCCCCCccEEEEeeeCCeEEEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVS--------------T------------------FQSEGPRPVMVSRSRAGFTLNIV   48 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~--------------~------------------~~~~t~~~~~~~~~~~g~~v~ii   48 (265)
                      +|..++|||||+++|+........              .                  ..+.|........+.++.++.+|
T Consensus        33 iGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~~~~i~~i  112 (474)
T PRK05124         33 CGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIA  112 (474)
T ss_pred             ECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEeccCCcEEEEE
Confidence            699999999999999965421110              0                  01122333334456678899999


Q ss_pred             eCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           49 DTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        49 DTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ||||..       .+...+...+  ..+|++|+|++.+. .+...+...+..+. ..+.   +++++|+||+|+.
T Consensus       113 DTPGh~-------~f~~~~~~~l--~~aD~allVVDa~~-G~~~qt~~~~~l~~-~lg~---~~iIvvvNKiD~~  173 (474)
T PRK05124        113 DTPGHE-------QYTRNMATGA--STCDLAILLIDARK-GVLDQTRRHSFIAT-LLGI---KHLVVAVNKMDLV  173 (474)
T ss_pred             ECCCcH-------HHHHHHHHHH--hhCCEEEEEEECCC-CccccchHHHHHHH-HhCC---CceEEEEEeeccc
Confidence            999952       2323333222  48899999976553 24343333333332 3332   6889999999985

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=98.93  E-value=1.4e-08  Score=94.90  Aligned_cols=109  Identities=17%  Similarity=0.134  Sum_probs=66.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCccc------------------------ccC------CCCCCCccEEEEeeeCCeEEEEEeC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVT------------------------VST------FQSEGPRPVMVSRSRAGFTLNIVDT   50 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~------------------------~~~------~~~~t~~~~~~~~~~~g~~v~iiDT   50 (265)
                      +|..++|||||+.+|+......                        ..+      ..+.|........++++..++++||
T Consensus        13 ~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~~i~lIDt   92 (446)
T PTZ00141         13 IGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYYFTIIDA   92 (446)
T ss_pred             EecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCeEEEEEEC
Confidence            5899999999999998521100                        001      1123333444556778889999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCC------CHHHHHHHHHHHHhcCcCcCCcEEEEEeCccC
Q 024586           51 PGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRV------DNLDKQITRAITDNFGEQIWKRALIVLTHAQL  122 (265)
Q Consensus        51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~------~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~  122 (265)
                      ||..       ++...+...+  ..+|++++|++.+..-+      ....++.+..+..+ |-   +++|+++||+|.
T Consensus        93 PGh~-------~f~~~~~~g~--~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~-gi---~~iiv~vNKmD~  157 (446)
T PTZ00141         93 PGHR-------DFIKNMITGT--SQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL-GV---KQMIVCINKMDD  157 (446)
T ss_pred             CChH-------HHHHHHHHhh--hhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc-CC---CeEEEEEEcccc
Confidence            9963       3333333332  37899999976553212      23445555544433 32   467899999995

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=98.92  E-value=1.6e-08  Score=96.29  Aligned_cols=108  Identities=13%  Similarity=0.124  Sum_probs=68.2

Q ss_pred             CCCCCCCHHHHHHHHhCCC--cccccCCC-------------------CCCCccEEEEeeeCCeEEEEEeCCCCCCCCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK--AVTVSTFQ-------------------SEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV   59 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~--~~~~~~~~-------------------~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~   59 (265)
                      +|..|+|||||.++|+...  ....+...                   +.|.........+++..+++|||||..+..  
T Consensus        16 iGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~~df~--   93 (526)
T PRK00741         16 ISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGHEDFS--   93 (526)
T ss_pred             ECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCchhhH--
Confidence            5899999999999997321  11111100                   111222234567789999999999985422  


Q ss_pred             cHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           60 NYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        60 ~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                           ..+.+++  ..+|++++|++... ........+++.....     ..|+++++||+|+.
T Consensus        94 -----~~~~~~l--~~aD~aIlVvDa~~-gv~~~t~~l~~~~~~~-----~iPiiv~iNK~D~~  144 (526)
T PRK00741         94 -----EDTYRTL--TAVDSALMVIDAAK-GVEPQTRKLMEVCRLR-----DTPIFTFINKLDRD  144 (526)
T ss_pred             -----HHHHHHH--HHCCEEEEEEecCC-CCCHHHHHHHHHHHhc-----CCCEEEEEECCccc
Confidence                 2222222  26799999976653 3555555666554432     28999999999974

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=98.91  E-value=9.1e-09  Score=86.80  Aligned_cols=108  Identities=14%  Similarity=0.098  Sum_probs=61.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEE--e--eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVS--R--SRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI   76 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~--~--~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~   76 (265)
                      +|.+|||||||++.++....  ...+. .|.......  .  .-....+.+|||||.....    ...   ..+.  ...
T Consensus        15 iG~~g~GKTtLi~~~~~~~~--~~~~~-~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~----~~~---~~~~--~~~   82 (215)
T PTZ00132         15 VGDGGVGKTTFVKRHLTGEF--EKKYI-PTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFG----GLR---DGYY--IKG   82 (215)
T ss_pred             ECCCCCCHHHHHHHHHhCCC--CCCCC-CccceEEEEEEEEECCeEEEEEEEECCCchhhh----hhh---HHHh--ccC
Confidence            69999999999986654432  11111 122211211  2  2234578999999963221    111   1111  367


Q ss_pred             cEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           77 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        77 d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      |++++|++++.......-..++..+.+... .  .++++|+||+|+.
T Consensus        83 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~--~~i~lv~nK~Dl~  126 (215)
T PTZ00132         83 QCAIIMFDVTSRITYKNVPNWHRDIVRVCE-N--IPIVLVGNKVDVK  126 (215)
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECccCc
Confidence            999999877642211222345555555432 2  6889999999984

>PRK05433 GTP-binding protein LepA; Provisional

Probab=98.91  E-value=2.3e-08  Score=96.60  Aligned_cols=108  Identities=19%  Similarity=0.155  Sum_probs=64.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccc--------cC------CCCCCCccEEEEeeeC-----CeEEEEEeCCCCCCCCCCcH
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTV--------ST------FQSEGPRPVMVSRSRA-----GFTLNIVDTPGLIEGGYVNY   61 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~--------~~------~~~~t~~~~~~~~~~~-----g~~v~iiDTPG~~~~~~~~~   61 (265)
                      +|..++|||||+++|+.......        .+      ..+.|.........+.     +..+++|||||..+..    
T Consensus        13 iGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF~----   88 (600)
T PRK05433         13 IAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDFS----   88 (600)
T ss_pred             ECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHHH----
Confidence            58999999999999986431110        00      1123333333333332     4678999999996532    


Q ss_pred             HHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           62 HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        62 ~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                         ..+.+++  ..+|++|+|++.+. .....+...+......     ..|+++|+||+|+.
T Consensus        89 ---~~v~~sl--~~aD~aILVVDas~-gv~~qt~~~~~~~~~~-----~lpiIvViNKiDl~  139 (600)
T PRK05433         89 ---YEVSRSL--AACEGALLVVDASQ-GVEAQTLANVYLALEN-----DLEIIPVLNKIDLP  139 (600)
T ss_pred             ---HHHHHHH--HHCCEEEEEEECCC-CCCHHHHHHHHHHHHC-----CCCEEEEEECCCCC
Confidence               2233333  26799999976653 2444444444333221     26899999999984

>PRK12740 elongation factor G; Reviewed

Probab=98.91  E-value=2.3e-08  Score=98.10  Aligned_cols=108  Identities=17%  Similarity=0.210  Sum_probs=70.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccc--cC---------------CCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTV--ST---------------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA   63 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~--~~---------------~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~   63 (265)
                      +|..|+|||||+|+|+.......  +.               ..+.|.........+++..+++|||||..+.       
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~-------   73 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDF-------   73 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHH-------
Confidence            69999999999999975532211  00               0122333334566778999999999998531       


Q ss_pred             HHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           64 IQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        64 ~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ...+...+  ..+|++++|++... .........+..+...     ..|+++|+||+|..
T Consensus        74 ~~~~~~~l--~~aD~vllvvd~~~-~~~~~~~~~~~~~~~~-----~~p~iiv~NK~D~~  125 (668)
T PRK12740         74 TGEVERAL--RVLDGAVVVVCAVG-GVEPQTETVWRQAEKY-----GVPRIIFVNKMDRA  125 (668)
T ss_pred             HHHHHHHH--HHhCeEEEEEeCCC-CcCHHHHHHHHHHHHc-----CCCEEEEEECCCCC
Confidence            11222222  26799999976654 3455555666555443     27899999999985

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.88  E-value=9.4e-08  Score=81.43  Aligned_cols=96  Identities=18%  Similarity=0.105  Sum_probs=60.2

Q ss_pred             CCCCCCCHHHHHHHHhCC-CcccccC-CCCCCCccEEEEeee---CCeEEEEEeCCCCCCCCCCc---HHHHHHHHHHHh
Q 024586            1 MGKGGVGKSSTVNSIIGE-KAVTVST-FQSEGPRPVMVSRSR---AGFTLNIVDTPGLIEGGYVN---YHAIQLIKRFLL   72 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~-~~~~~~~-~~~~t~~~~~~~~~~---~g~~v~iiDTPG~~~~~~~~---~~~~~~i~~~l~   72 (265)
                      +|++++|||+|+|.|+|. ..+.++. ..++|.........+   .+..+.++||||+.+.....   +..+-.+...  
T Consensus        13 ~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~~l~~l--   90 (224)
T cd01851          13 FGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLFALATL--   90 (224)
T ss_pred             ECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHHHHHHH--
Confidence            699999999999999998 2444443 456666655555444   35789999999998765433   1222222211  


Q ss_pred             cCCccEEEEEEecCCcCCCHHHHHHHHHHHH
Q 024586           73 NKTIDVLLYVDRLDVYRVDNLDKQITRAITD  103 (265)
Q Consensus        73 ~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~  103 (265)
                        -.++++|..  .. .....+...+..+.+
T Consensus        91 --lss~~i~n~--~~-~~~~~~~~~l~~~~~  116 (224)
T cd01851          91 --LSSVLIYNS--WE-TILGDDLAALMGLLK  116 (224)
T ss_pred             --HhCEEEEec--cC-cccHHHHHHHHHHHH
Confidence              358888883  32 234455555544443

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.88  E-value=1.6e-07  Score=73.41  Aligned_cols=113  Identities=17%  Similarity=0.162  Sum_probs=77.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      ||..|+||+-|+..+...-. +.+..............+++|.  ++.||||.|...       .......+.  +.+|+
T Consensus        13 vgnagvgktclvrrftqglf-ppgqgatigvdfmiktvev~gekiklqiwdtagqer-------frsitqsyy--rsaha   82 (213)
T KOG0095|consen   13 VGNAGVGKTCLVRRFTQGLF-PPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQER-------FRSITQSYY--RSAHA   82 (213)
T ss_pred             EccCCcCcchhhhhhhccCC-CCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHH-------HHHHHHHHh--hhcce
Confidence            69999999999999887642 3332222233445556677765  568999999732       222222222  36799


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP  125 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~  125 (265)
                      +++|++++.....+---+|+..|.+.....  .-.|+|.||.|+.+.
T Consensus        83 lilvydiscqpsfdclpewlreie~yan~k--vlkilvgnk~d~~dr  127 (213)
T KOG0095|consen   83 LILVYDISCQPSFDCLPEWLREIEQYANNK--VLKILVGNKIDLADR  127 (213)
T ss_pred             EEEEEecccCcchhhhHHHHHHHHHHhhcc--eEEEeeccccchhhh
Confidence            999999987554455568999998876554  346899999998643

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=98.88  E-value=1.2e-08  Score=86.98  Aligned_cols=118  Identities=17%  Similarity=0.040  Sum_probs=65.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeee-CCeEEEEEeCCCCCCCCCCc-HHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR-AGFTLNIVDTPGLIEGGYVN-YHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~-~g~~v~iiDTPG~~~~~~~~-~~~~~~i~~~l~~~~~d~   78 (265)
                      +|+.|+||||..+.+++.-.......-+.|.+........ ....+.+||.||..+.-... ....+.+-     .++++
T Consensus         5 mG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if-----~~v~~   79 (232)
T PF04670_consen    5 MGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIF-----SNVGV   79 (232)
T ss_dssp             EESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHH-----CTESE
T ss_pred             EcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHH-----hccCE
Confidence            6999999999999999875433333334455555545543 45699999999987542210 00111221     48899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ++||+++......+.-..+...+......+...++-+.+.|+|+.
T Consensus        80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l  124 (232)
T PF04670_consen   80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLL  124 (232)
T ss_dssp             EEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS
T ss_pred             EEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccC
Confidence            999976653333333333333343333223336788999999985

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=98.87  E-value=8.7e-09  Score=83.19  Aligned_cols=113  Identities=19%  Similarity=0.172  Sum_probs=70.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|.+...+.. .........+.......++++  .+.||||.|...        ++.+... --+++|.
T Consensus        15 LGDsGVGKtSLmn~yv~~kF~-~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQER--------FqsLg~a-FYRgaDc   84 (210)
T KOG0394|consen   15 LGDSGVGKTSLMNQYVNKKFS-QQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQER--------FQSLGVA-FYRGADC   84 (210)
T ss_pred             eCCCCccHHHHHHHHHHHHHH-HHhccccchhheeeEEEEcCeEEEEEEEecccHHH--------hhhcccc-eecCCce
Confidence            599999999999999987632 111122233444455666666  458999999732        2222210 1159999


Q ss_pred             EEEEEecCCcC-CCHHHHHHHHHHHHhcCcC-cCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQ-IWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~-~~~~~ivV~tk~D~~  123 (265)
                      +++|++++... |...+.---+.|.+.-..+ -.-|+|++.||.|..
T Consensus        85 Cvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~  131 (210)
T KOG0394|consen   85 CVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVD  131 (210)
T ss_pred             EEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCC
Confidence            99999998744 5444433333333333222 346899999999984

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=98.86  E-value=2e-08  Score=93.77  Aligned_cols=119  Identities=23%  Similarity=0.226  Sum_probs=83.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCC---CCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQS---EGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~---~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (265)
                      +|.-|+||||||-+|+.++.  +...+.   ...-+  ........+..|+||+.-.   .......++++      .+|
T Consensus        15 iGD~G~GKtSLImSL~~eef--~~~VP~rl~~i~IP--advtPe~vpt~ivD~ss~~---~~~~~l~~Eir------kA~   81 (625)
T KOG1707|consen   15 IGDEGVGKTSLIMSLLEEEF--VDAVPRRLPRILIP--ADVTPENVPTSIVDTSSDS---DDRLCLRKEIR------KAD   81 (625)
T ss_pred             ECCCCccHHHHHHHHHhhhc--cccccccCCccccC--CccCcCcCceEEEeccccc---chhHHHHHHHh------hcC
Confidence            69999999999999999873  222221   11111  2333445568999997432   11223355665      779


Q ss_pred             EEEEEEecCCc-CCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHHH
Q 024586           78 VLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEV  132 (265)
Q Consensus        78 ~iL~V~~~d~~-r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~~  132 (265)
                      ++++|+.+|.. .++.....|+..+.+.+|+-...|+|+|.||+|.......+.+.
T Consensus        82 vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~  137 (625)
T KOG1707|consen   82 VICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEV  137 (625)
T ss_pred             EEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhH
Confidence            99999988873 37777889999999999988889999999999985433333444

>PRK04004 translation initiation factor IF-2; Validated

Probab=98.86  E-value=1.5e-08  Score=97.52  Aligned_cols=107  Identities=17%  Similarity=0.134  Sum_probs=63.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCcc--EEEEeee----CC------------eEEEEEeCCCCCCCCCCcHH
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRP--VMVSRSR----AG------------FTLNIVDTPGLIEGGYVNYH   62 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~--~~~~~~~----~g------------~~v~iiDTPG~~~~~~~~~~   62 (265)
                      +|.+|+|||||+|+|.|..+..... ...|.+.  .......    .+            ..+++|||||..+..     
T Consensus        12 ~Gh~~~GKTSLl~~l~~~~v~~~~~-g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~-----   85 (586)
T PRK04004         12 LGHVDHGKTTLLDKIRGTAVAAKEA-GGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFT-----   85 (586)
T ss_pred             ECCCCCCHHHHHHHHhCcccccCCC-CceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHH-----
Confidence            6999999999999999876422111 1111110  0000000    01            127899999984321     


Q ss_pred             HHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           63 AIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        63 ~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                        ....+..  ..+|++++|++.+. .+.......+..+...     ..|+++++||+|+.
T Consensus        86 --~~~~~~~--~~aD~~IlVvDa~~-g~~~qt~e~i~~~~~~-----~vpiIvviNK~D~~  136 (586)
T PRK04004         86 --NLRKRGG--ALADIAILVVDINE-GFQPQTIEAINILKRR-----KTPFVVAANKIDRI  136 (586)
T ss_pred             --HHHHHhH--hhCCEEEEEEECCC-CCCHhHHHHHHHHHHc-----CCCEEEEEECcCCc
Confidence              1111111  36899999977664 3556666666655442     27899999999984

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=98.86  E-value=3.2e-08  Score=91.57  Aligned_cols=69  Identities=20%  Similarity=0.128  Sum_probs=43.1

Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCcc
Q 024586           42 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ  121 (265)
Q Consensus        42 g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D  121 (265)
                      +..+++|||||..       ++...+....  ..+|++++|++.+..-......+.+..+ ...+.   +++++|+||+|
T Consensus        79 ~~~i~liDtPGh~-------~f~~~~~~g~--~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~gi---~~iIVvvNK~D  145 (406)
T TIGR03680        79 LRRVSFVDAPGHE-------TLMATMLSGA--ALMDGALLVIAANEPCPQPQTKEHLMAL-EIIGI---KNIVIVQNKID  145 (406)
T ss_pred             ccEEEEEECCCHH-------HHHHHHHHHH--HHCCEEEEEEECCCCccccchHHHHHHH-HHcCC---CeEEEEEEccc
Confidence            4689999999973       2333333222  3679999997766421134444455444 33332   67999999999


Q ss_pred             CC
Q 024586          122 LS  123 (265)
Q Consensus       122 ~~  123 (265)
                      +.
T Consensus       146 l~  147 (406)
T TIGR03680       146 LV  147 (406)
T ss_pred             cC
Confidence            85

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=98.85  E-value=1.9e-08  Score=93.23  Aligned_cols=68  Identities=19%  Similarity=0.136  Sum_probs=41.5

Q ss_pred             eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccC
Q 024586           43 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL  122 (265)
Q Consensus        43 ~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~  122 (265)
                      ..++++||||..       ++...+...  ...+|++++|++.+..-........+..+.. .+   .+++++|+||+|+
T Consensus        85 ~~i~liDtPG~~-------~f~~~~~~~--~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~-~~---i~~iiVVlNK~Dl  151 (411)
T PRK04000         85 RRVSFVDAPGHE-------TLMATMLSG--AALMDGAILVIAANEPCPQPQTKEHLMALDI-IG---IKNIVIVQNKIDL  151 (411)
T ss_pred             cEEEEEECCCHH-------HHHHHHHHH--HhhCCEEEEEEECCCCCCChhHHHHHHHHHH-cC---CCcEEEEEEeecc
Confidence            578999999962       222222211  1367999999766532113444555554433 22   1578999999998


Q ss_pred             C
Q 024586          123 S  123 (265)
Q Consensus       123 ~  123 (265)
                      .
T Consensus       152 ~  152 (411)
T PRK04000        152 V  152 (411)
T ss_pred             c
Confidence            5

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.83  E-value=5.1e-09  Score=82.63  Aligned_cols=51  Identities=33%  Similarity=0.489  Sum_probs=39.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLI   54 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~   54 (265)
                      +|.+|+||||++|+|++.....++..++.|.+...  ...++ .+.++||||+.
T Consensus        89 ~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~i~DtpG~~  139 (141)
T cd01857          89 VGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQT--IFLTP-TITLCDCPGLV  139 (141)
T ss_pred             ECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEE--EEeCC-CEEEEECCCcC
Confidence            59999999999999999887666666666665443  33333 67999999984

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PRK09602 translation-associated GTPase; Reviewed

Probab=98.82  E-value=1.8e-08  Score=92.72  Aligned_cols=79  Identities=19%  Similarity=0.262  Sum_probs=57.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEee---------------------eC---CeEEEEEeCCCCCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS---------------------RA---GFTLNIVDTPGLIEG   56 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~---------------------~~---g~~v~iiDTPG~~~~   56 (265)
                      ||.++||||||+|+|++... .+++++.+|..+......                     .+   ..++.++||||+.++
T Consensus         7 vG~pnvGKSTlfn~Lt~~~~-~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aGl~~g   85 (396)
T PRK09602          7 VGKPNVGKSTFFNAATLADV-EIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAGLVPG   85 (396)
T ss_pred             ECCCCCCHHHHHHHHhCCcc-cccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCCcCCC
Confidence            69999999999999999875 667788788777664432                     11   246789999999765


Q ss_pred             CCCc----HHHHHHHHHHHhcCCccEEEEEEecC
Q 024586           57 GYVN----YHAIQLIKRFLLNKTIDVLLYVDRLD   86 (265)
Q Consensus        57 ~~~~----~~~~~~i~~~l~~~~~d~iL~V~~~d   86 (265)
                      ....    ..++..++      .+|++++|++..
T Consensus        86 a~~g~glg~~fL~~ir------~ad~ll~Vvd~~  113 (396)
T PRK09602         86 AHEGRGLGNQFLDDLR------QADALIHVVDAS  113 (396)
T ss_pred             ccchhhHHHHHHHHHH------HCCEEEEEEeCC
Confidence            4322    23444454      789999998774

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.81  E-value=2.2e-08  Score=82.12  Aligned_cols=111  Identities=17%  Similarity=0.209  Sum_probs=62.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeee---CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR---AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~---~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (265)
                      +|++|+|||+|...|.....  ...   .|.........+   .+..+.+||+||...-.   ...++.+.   ..+.+.
T Consensus         9 ~Gps~SGKTaLf~~L~~~~~--~~T---~tS~e~n~~~~~~~~~~~~~~lvD~PGH~rlr---~~~~~~~~---~~~~~k   77 (181)
T PF09439_consen    9 VGPSGSGKTALFSQLVNGKT--VPT---VTSMENNIAYNVNNSKGKKLRLVDIPGHPRLR---SKLLDELK---YLSNAK   77 (181)
T ss_dssp             E-STTSSHHHHHHHHHHSS-----B------SSEEEECCGSSTCGTCECEEEETT-HCCC---HHHHHHHH---HHGGEE
T ss_pred             EcCCCCCHHHHHHHHhcCCc--CCe---eccccCCceEEeecCCCCEEEEEECCCcHHHH---HHHHHhhh---chhhCC
Confidence            59999999999999998742  111   122222222333   56689999999985322   23333322   224688


Q ss_pred             EEEEEEecCCcCCCHHHHHHHHHHHHhcC----cCcCCcEEEEEeCccCCC
Q 024586           78 VLLYVDRLDVYRVDNLDKQITRAITDNFG----EQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g----~~~~~~~ivV~tk~D~~~  124 (265)
                      +|+||++..  .+..+-....+.|...+-    ..-..|++|+.||.|+..
T Consensus        78 ~IIfvvDSs--~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~  126 (181)
T PF09439_consen   78 GIIFVVDSS--TDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT  126 (181)
T ss_dssp             EEEEEEETT--THHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred             EEEEEEeCc--cchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence            999995433  333334445555544442    123479999999999953

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PTZ00416 elongation factor 2; Provisional

Probab=98.80  E-value=4.5e-08  Score=98.03  Aligned_cols=108  Identities=17%  Similarity=0.194  Sum_probs=69.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCC---------------CCCCccEEEEeeeC----------CeEEEEEeCCCCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQ---------------SEGPRPVMVSRSRA----------GFTLNIVDTPGLIE   55 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~---------------~~t~~~~~~~~~~~----------g~~v~iiDTPG~~~   55 (265)
                      +|..++|||||+++|++..........               +.|.........+.          +..++++||||..+
T Consensus        25 iGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liDtPG~~~  104 (836)
T PTZ00416         25 IAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLIDSPGHVD  104 (836)
T ss_pred             ECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEcCCCHHh
Confidence            689999999999999975421111111               11111111223333          56799999999854


Q ss_pred             CCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           56 GGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        56 ~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                             ....+...+  ..+|++++|++... .+...+..+++.+.+..     .|+++++||+|+.
T Consensus       105 -------f~~~~~~al--~~~D~ailVvda~~-g~~~~t~~~~~~~~~~~-----~p~iv~iNK~D~~  157 (836)
T PTZ00416        105 -------FSSEVTAAL--RVTDGALVVVDCVE-GVCVQTETVLRQALQER-----IRPVLFINKVDRA  157 (836)
T ss_pred             -------HHHHHHHHH--hcCCeEEEEEECCC-CcCccHHHHHHHHHHcC-----CCEEEEEEChhhh
Confidence                   222333332  37899999966543 36777777777776643     7999999999984

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=98.80  E-value=5e-08  Score=77.36  Aligned_cols=107  Identities=23%  Similarity=0.245  Sum_probs=70.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|..|+||||+++.|+|+....++    .|......+.++.+.++.+||.-|.-...    .+.   +.|+  ...|+++
T Consensus        22 LGLdNsGKTti~~kl~~~~~~~i~----pt~gf~Iktl~~~~~~L~iwDvGGq~~lr----~~W---~nYf--estdglI   88 (185)
T KOG0073|consen   22 LGLDNSGKTTIVKKLLGEDTDTIS----PTLGFQIKTLEYKGYTLNIWDVGGQKTLR----SYW---KNYF--ESTDGLI   88 (185)
T ss_pred             EecCCCCchhHHHHhcCCCccccC----CccceeeEEEEecceEEEEEEcCCcchhH----HHH---HHhh--hccCeEE
Confidence            589999999999999998743222    34556667888999999999998874322    222   2222  2679999


Q ss_pred             EEEecCCcCCCHHHHHHHHHHHHhcCc-C-cCCcEEEEEeCccCC
Q 024586           81 YVDRLDVYRVDNLDKQITRAITDNFGE-Q-IWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~-~-~~~~~ivV~tk~D~~  123 (265)
                      ||++..+.+.-++-...   ++..... . +..+++++.||.|+.
T Consensus        89 wvvDssD~~r~~e~~~~---L~~lL~eerlaG~~~Lvlank~dl~  130 (185)
T KOG0073|consen   89 WVVDSSDRMRMQECKQE---LTELLVEERLAGAPLLVLANKQDLP  130 (185)
T ss_pred             EEEECchHHHHHHHHHH---HHHHHhhhhhcCCceEEEEecCcCc
Confidence            99765442222222333   3333322 1 347999999999983

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.79  E-value=1.4e-09  Score=87.33  Aligned_cols=56  Identities=27%  Similarity=0.408  Sum_probs=32.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCC-------CCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTF-------QSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV   59 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~-------~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~   59 (265)
                      +|.||||||||+|+|++.....++..       ..+|+....+....   .-.||||||+.+.+..
T Consensus        41 ~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~---g~~iIDTPGf~~~~l~  103 (161)
T PF03193_consen   41 LGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPD---GGYIIDTPGFRSFGLW  103 (161)
T ss_dssp             ECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETT---SEEEECSHHHHT--GC
T ss_pred             ECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCC---CcEEEECCCCCccccc
Confidence            59999999999999999854444332       23444444333322   2369999999876544

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.78  E-value=1.3e-08  Score=89.83  Aligned_cols=59  Identities=24%  Similarity=0.358  Sum_probs=46.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHH
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH   62 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~   62 (265)
                      +|.+||||||++|+|.|...+.+++.+++|.......  . +..+.++||||+..+...+++
T Consensus       127 ~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~--~-~~~~~l~DtPGi~~~~~~~~~  185 (287)
T PRK09563        127 IGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIK--L-GKGLELLDTPGILWPKLEDQE  185 (287)
T ss_pred             ECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEE--e-CCcEEEEECCCcCCCCCCcHH
Confidence            6999999999999999998888888888877654322  2 346889999999877655543

>PRK12289 GTPase RsgA; Reviewed

Probab=98.77  E-value=7.1e-09  Score=93.78  Aligned_cols=55  Identities=27%  Similarity=0.437  Sum_probs=39.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCC-------CCCccEEEEeeeCCeEEEEEeCCCCCCCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQS-------EGPRPVMVSRSRAGFTLNIVDTPGLIEGGY   58 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~-------~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~   58 (265)
                      +|.||||||||||+|++.....++..++       +|+....+...-++   .++||||+...+.
T Consensus       178 iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~~~l  239 (352)
T PRK12289        178 AGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQPDL  239 (352)
T ss_pred             EeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCcccccc
Confidence            6999999999999999987666665554       55555444332233   6999999976544

>PLN00043 elongation factor 1-alpha; Provisional

Probab=98.77  E-value=1.7e-07  Score=87.72  Aligned_cols=110  Identities=13%  Similarity=0.095  Sum_probs=66.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcc--------------c----------ccC------CCCCCCccEEEEeeeCCeEEEEEeC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAV--------------T----------VST------FQSEGPRPVMVSRSRAGFTLNIVDT   50 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~--------------~----------~~~------~~~~t~~~~~~~~~~~g~~v~iiDT   50 (265)
                      +|..++|||||+-+|+-....              .          ..+      ..+.|........+.+++.++++||
T Consensus        13 ~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDt   92 (447)
T PLN00043         13 IGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDA   92 (447)
T ss_pred             EecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCEEEEEEEC
Confidence            589999999999888732100              0          000      1123334444556677889999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCC------HHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           51 PGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVD------NLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~------~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ||..       ++...+...+  ..+|+.++|++.+...+.      ...++.+..+ ...|-   +++|+++||+|+.
T Consensus        93 PGh~-------df~~~~~~g~--~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~-~~~gi---~~iIV~vNKmD~~  158 (447)
T PLN00043         93 PGHR-------DFIKNMITGT--SQADCAVLIIDSTTGGFEAGISKDGQTREHALLA-FTLGV---KQMICCCNKMDAT  158 (447)
T ss_pred             CCHH-------HHHHHHHhhh--hhccEEEEEEEcccCceecccCCCchHHHHHHHH-HHcCC---CcEEEEEEcccCC
Confidence            9973       4444444433  378999999776642232      2333333322 22332   4689999999974

>PRK12288 GTPase RsgA; Reviewed

Probab=98.76  E-value=9.9e-09  Score=92.76  Aligned_cols=56  Identities=29%  Similarity=0.524  Sum_probs=38.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCC-------CCCccEEEEeeeCCeEEEEEeCCCCCCCCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQS-------EGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV   59 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~-------~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~   59 (265)
                      +|.||||||||+|+|++.....++..+.       +|+....+....++   .|+||||+.+.+..
T Consensus       211 vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~l~  273 (347)
T PRK12288        211 VGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFGLW  273 (347)
T ss_pred             ECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCcccCC
Confidence            6999999999999999987666655432       33333333332233   49999999876553

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.75  E-value=1.1e-08  Score=89.47  Aligned_cols=55  Identities=27%  Similarity=0.518  Sum_probs=38.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCC-------CCCCCccEEEEeeeCCeEEEEEeCCCCCCCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTF-------QSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY   58 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~-------~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~   58 (265)
                      +|.||||||||+|+|.++....++..       ..||+....+....+|.   |+||||+.+.+.
T Consensus       170 ~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~---iiDTPGf~~~~l  231 (301)
T COG1162         170 LGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGW---IIDTPGFRSLGL  231 (301)
T ss_pred             ECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCE---EEeCCCCCccCc
Confidence            59999999999999999654343332       23455554445444554   999999987655

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.75  E-value=2.3e-08  Score=87.88  Aligned_cols=58  Identities=24%  Similarity=0.366  Sum_probs=45.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcH
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY   61 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~   61 (265)
                      +|.+|+||||++|+|.+.....++..+++|.......  . +..+.++||||+..+...+.
T Consensus       124 vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~--~-~~~~~l~DtPG~~~~~~~~~  181 (276)
T TIGR03596       124 VGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIK--L-SDGLELLDTPGILWPKFEDQ  181 (276)
T ss_pred             ECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEE--e-CCCEEEEECCCcccCCCCch
Confidence            6999999999999999998778888888877665333  2 23688999999976654443

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=98.74  E-value=1.1e-07  Score=86.80  Aligned_cols=169  Identities=15%  Similarity=0.114  Sum_probs=96.2

Q ss_pred             CCCHHHHHHHHhCCCccccc------------CC---CCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 024586            5 GVGKSSTVNSIIGEKAVTVS------------TF---QSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKR   69 (265)
Q Consensus         5 g~GKSSliN~llg~~~~~~~------------~~---~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~   69 (265)
                      .-|||||+..|+.+...+..            +.   .+.|.-.......++|..++|+||||..|.+..-+..++    
T Consensus        15 DHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEVERvl~----   90 (603)
T COG1217          15 DHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEVERVLS----   90 (603)
T ss_pred             cCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchhhhhhh----
Confidence            46999999999976432111            00   122222333467789999999999999887765444443    


Q ss_pred             HHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHHHHHhhchHHHHHHHhccc
Q 024586           70 FLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPST  149 (265)
Q Consensus        70 ~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~  149 (265)
                           -+|.+|++++... ..-++.+..++.-.+..     -+-|+|+||.|..   ...+++-+.   +.+--+++-.+
T Consensus        91 -----MVDgvlLlVDA~E-GpMPQTrFVlkKAl~~g-----L~PIVVvNKiDrp---~Arp~~Vvd---~vfDLf~~L~A  153 (603)
T COG1217          91 -----MVDGVLLLVDASE-GPMPQTRFVLKKALALG-----LKPIVVINKIDRP---DARPDEVVD---EVFDLFVELGA  153 (603)
T ss_pred             -----hcceEEEEEEccc-CCCCchhhhHHHHHHcC-----CCcEEEEeCCCCC---CCCHHHHHH---HHHHHHHHhCC
Confidence                 3477777744332 23344555554333332     5668889999973   334444442   33333444443


Q ss_pred             cccccccccCCchhHhhhcCCcCCCCccccccCCCCCCChHHHHHHHHHHhhCCC
Q 024586          150 WMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGS  204 (265)
Q Consensus       150 ~~~~~~~~~~~ip~~~~~n~~~~~~~~~~~~~lp~~~~W~~~L~~~i~~~~~~~~  204 (265)
                      .....     ..|++.++......+-     ...+...-+..|++.|++.+|+-.
T Consensus       154 ~deQL-----dFPivYAS~~~G~a~~-----~~~~~~~~m~pLfe~I~~hvp~P~  198 (603)
T COG1217         154 TDEQL-----DFPIVYASARNGTASL-----DPEDEADDMAPLFETILDHVPAPK  198 (603)
T ss_pred             ChhhC-----CCcEEEeeccCceecc-----CccccccchhHHHHHHHHhCCCCC
Confidence            32222     2466555544222211     112222229999999999998754

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=98.74  E-value=4.5e-08  Score=96.67  Aligned_cols=108  Identities=12%  Similarity=0.179  Sum_probs=66.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcc---------cccCC------CCCCCccEE----EEeeeCCeEEEEEeCCCCCCCCCCcH
Q 024586            1 MGKGGVGKSSTVNSIIGEKAV---------TVSTF------QSEGPRPVM----VSRSRAGFTLNIVDTPGLIEGGYVNY   61 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~---------~~~~~------~~~t~~~~~----~~~~~~g~~v~iiDTPG~~~~~~~~~   61 (265)
                      +|..|+|||||+++|+.....         ...++      .+.|.....    ....+++..+++|||||+.+..   .
T Consensus        25 vGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~f~---~  101 (720)
T TIGR00490        25 VAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVDFG---G  101 (720)
T ss_pred             EEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccccH---H
Confidence            589999999999999853110         00011      112222211    2245667889999999996532   2


Q ss_pred             HHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           62 HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        62 ~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +....++      .+|++|+|++... .....+..+++.+.+..     .|.++|+||+|..
T Consensus       102 ~~~~al~------~aD~~llVvda~~-g~~~~t~~~~~~~~~~~-----~p~ivviNKiD~~  151 (720)
T TIGR00490       102 DVTRAMR------AVDGAIVVVCAVE-GVMPQTETVLRQALKEN-----VKPVLFINKVDRL  151 (720)
T ss_pred             HHHHHHH------hcCEEEEEEecCC-CCCccHHHHHHHHHHcC-----CCEEEEEEChhcc
Confidence            2222333      7899999976543 24555556665544332     6778999999984

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.73  E-value=3.2e-07  Score=71.59  Aligned_cols=113  Identities=16%  Similarity=0.125  Sum_probs=67.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCC-CCccEEEEee--eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMVSRS--RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~-t~~~~~~~~~--~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (265)
                      +|.+.+||+|++-+.++...  .+.+-++ +.........  -....+.||||.|...        ...|... .-++++
T Consensus        27 iGnssvGKTSfl~ry~ddSF--t~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEr--------yrtiTTa-yyRgam   95 (193)
T KOG0093|consen   27 IGNSSVGKTSFLFRYADDSF--TSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQER--------YRTITTA-YYRGAM   95 (193)
T ss_pred             EccCCccchhhhHHhhcccc--ccceeeeeeeeEEEeEeeecccEEEEEEEecccchh--------hhHHHHH-Hhhccc
Confidence            69999999999999999762  2222211 1111111111  1235789999999832        2233221 125899


Q ss_pred             EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCC
Q 024586           78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD  126 (265)
Q Consensus        78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~  126 (265)
                      ++++++++........-..+.-.|....-.+  .++|+|.||||+...+
T Consensus        96 gfiLmyDitNeeSf~svqdw~tqIktysw~n--aqvilvgnKCDmd~eR  142 (193)
T KOG0093|consen   96 GFILMYDITNEESFNSVQDWITQIKTYSWDN--AQVILVGNKCDMDSER  142 (193)
T ss_pred             eEEEEEecCCHHHHHHHHHHHHHheeeeccC--ceEEEEecccCCccce
Confidence            9999988775332233344444444432222  6899999999995433

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.71  E-value=1.8e-08  Score=87.01  Aligned_cols=54  Identities=31%  Similarity=0.419  Sum_probs=38.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCC-------CCCCccEEEEeeeCCeEEEEEeCCCCCCCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQ-------SEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY   58 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~-------~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~   58 (265)
                      +|.+|||||||+|+|++.....++...       .+|+....+.. -+|   .|+||||+.+.+.
T Consensus       126 ~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l-~~~---~liDtPG~~~~~l  186 (245)
T TIGR00157       126 AGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF-HGG---LIADTPGFNEFGL  186 (245)
T ss_pred             ECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc-CCc---EEEeCCCccccCC
Confidence            699999999999999997654444332       25555554444 233   6999999987654

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.70  E-value=8.7e-08  Score=86.54  Aligned_cols=176  Identities=17%  Similarity=0.230  Sum_probs=96.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcc-----------------ccc-------------CCCCCCCccEEEEeeeCCeEEEEEeC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAV-----------------TVS-------------TFQSEGPRPVMVSRSRAGFTLNIVDT   50 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~-----------------~~~-------------~~~~~t~~~~~~~~~~~g~~v~iiDT   50 (265)
                      +|...+|||||+-.|+-+...                 ..+             ...+.|.......++-+...++|+|+
T Consensus        13 iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~~~tIiDa   92 (428)
T COG5256          13 IGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKYNFTIIDA   92 (428)
T ss_pred             EcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCceEEEeeC
Confidence            689999999999888743110                 000             01122323333344455667999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcC------CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           51 PGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR------VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r------~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      ||..|      -..++|.-+   ..+|+.++|++.....      ...+.++ .-.|.+..|-   .+.||++||+|..+
T Consensus        93 PGHrd------FvknmItGa---sqAD~aVLVV~a~~~efE~g~~~~gQtrE-H~~La~tlGi---~~lIVavNKMD~v~  159 (428)
T COG5256          93 PGHRD------FVKNMITGA---SQADVAVLVVDARDGEFEAGFGVGGQTRE-HAFLARTLGI---KQLIVAVNKMDLVS  159 (428)
T ss_pred             CchHH------HHHHhhcch---hhccEEEEEEECCCCccccccccCCchhH-HHHHHHhcCC---ceEEEEEEcccccc
Confidence            99632      122233211   3789999997666542      2222332 2345566663   78999999999965


Q ss_pred             CCCCCHHHHHhhchHHHHHHHhccccccccccccCCchhHhhhcCCcCCCCccccccCCCCCCC--hHHHHHHHHHHhhC
Q 024586          125 PDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAW--IPNLVKTITEVVLN  202 (265)
Q Consensus       125 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ip~~~~~n~~~~~~~~~~~~~lp~~~~W--~~~L~~~i~~~~~~  202 (265)
                      .++..+++..    ..+..+++.++ |+..     .++++.++.    +++.+-.+.- +...|  -+.|++.+-..-++
T Consensus       160 wde~rf~ei~----~~v~~l~k~~G-~~~~-----~v~FIPiSg----~~G~Nl~~~s-~~~pWY~GpTLleaLd~~~~p  224 (428)
T COG5256         160 WDEERFEEIV----SEVSKLLKMVG-YNPK-----DVPFIPISG----FKGDNLTKKS-ENMPWYKGPTLLEALDQLEPP  224 (428)
T ss_pred             cCHHHHHHHH----HHHHHHHHHcC-CCcc-----CCeEEeccc----ccCCcccccC-cCCcCccCChHHHHHhccCCC
Confidence            4443343333    34445555544 3322     244444443    2232222211 34567  68899998866666


Q ss_pred             CC
Q 024586          203 GS  204 (265)
Q Consensus       203 ~~  204 (265)
                      ++
T Consensus       225 ~~  226 (428)
T COG5256         225 ER  226 (428)
T ss_pred             CC
Confidence            53

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.64  E-value=3.8e-08  Score=88.25  Aligned_cols=57  Identities=25%  Similarity=0.394  Sum_probs=46.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN   60 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~   60 (265)
                      ||-++|||||+||+|+|...+.++..+++|.........   ..+.++||||+.-.....
T Consensus       138 vG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~---~~i~LlDtPGii~~~~~~  194 (322)
T COG1161         138 VGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLD---DGIYLLDTPGIIPPKFDD  194 (322)
T ss_pred             EcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcC---CCeEEecCCCcCCCCccc
Confidence            699999999999999999998999999888765544433   237899999997665544

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.63  E-value=1.9e-07  Score=80.26  Aligned_cols=114  Identities=25%  Similarity=0.334  Sum_probs=71.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcc-cccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCC---CcHHHHHHHHHHHhcC--
Q 024586            1 MGKGGVGKSSTVNSIIGEKAV-TVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY---VNYHAIQLIKRFLLNK--   74 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~-~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~---~~~~~~~~i~~~l~~~--   74 (265)
                      +|.|++|||||+|.++..... ..+.  +.+...+......-|..+.++|.||++-.+.   ..+++-...+.++..+  
T Consensus       142 ~g~SNVGKSSLln~~~r~k~~~~t~k--~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~n  219 (320)
T KOG2486|consen  142 YGRSNVGKSSLLNDLVRVKNIADTSK--SKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLEREN  219 (320)
T ss_pred             ecCCcccHHHHHhhhhhhhhhhhhcC--CCCccceeeeeeeccceEEEEecCCcccccCCccCcchHhHhHHHHHHhhhh
Confidence            589999999999999986532 1221  1222222233334467889999999665432   2234445555555432  


Q ss_pred             CccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           75 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        75 ~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      -..+||+|+...  .+...|...++.+.+..     .|+.+||||+|..
T Consensus       220 Lv~~FLLvd~sv--~i~~~D~~~i~~~ge~~-----VP~t~vfTK~DK~  261 (320)
T KOG2486|consen  220 LVRVFLLVDASV--PIQPTDNPEIAWLGENN-----VPMTSVFTKCDKQ  261 (320)
T ss_pred             hheeeeeeeccC--CCCCCChHHHHHHhhcC-----CCeEEeeehhhhh
Confidence            356777773222  35566666666666654     8999999999973

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=98.63  E-value=4.9e-07  Score=84.65  Aligned_cols=68  Identities=15%  Similarity=0.099  Sum_probs=42.2

Q ss_pred             eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccC
Q 024586           43 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL  122 (265)
Q Consensus        43 ~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~  122 (265)
                      ..+.++||||.       +.+...+...+  ..+|++++|++.+......+..+.+.. ....|-   +++|+|+||+|+
T Consensus       117 ~~i~~IDtPGH-------~~fi~~m~~g~--~~~D~alLVVda~~g~~~~qT~ehl~i-~~~lgi---~~iIVvlNKiDl  183 (460)
T PTZ00327        117 RHVSFVDCPGH-------DILMATMLNGA--AVMDAALLLIAANESCPQPQTSEHLAA-VEIMKL---KHIIILQNKIDL  183 (460)
T ss_pred             ceEeeeeCCCH-------HHHHHHHHHHH--hhCCEEEEEEECCCCccchhhHHHHHH-HHHcCC---CcEEEEEecccc
Confidence            47899999996       23333333322  378999999766632123333344433 333442   689999999998


Q ss_pred             C
Q 024586          123 S  123 (265)
Q Consensus       123 ~  123 (265)
                      .
T Consensus       184 v  184 (460)
T PTZ00327        184 V  184 (460)
T ss_pred             c
Confidence            5

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.63  E-value=1.5e-07  Score=80.84  Aligned_cols=138  Identities=20%  Similarity=0.231  Sum_probs=86.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccC---CCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcH------HHH-----
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVST---FQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNY------HAI-----   64 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~---~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~------~~~-----   64 (265)
                      ||.||.|||||+++|++........   .+........+...-.+.  +++|+||.|++|.-..++      +++     
T Consensus        48 vGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdyidaQFE  127 (406)
T KOG3859|consen   48 VGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDYIDAQFE  127 (406)
T ss_pred             eccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHHHHHHHHH
Confidence            6999999999999999986421111   111112222233333333  579999999997532211      111     


Q ss_pred             ---H---HHHHHH---hcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHHHHHh
Q 024586           65 ---Q---LIKRFL---LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCS  135 (265)
Q Consensus        65 ---~---~i~~~l---~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~~~~~  135 (265)
                         +   .|++.+   .+..+|++||.+...+..+...|.-.++.+...      .++|-|+.|+|-.     +-++...
T Consensus       128 aYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Ldsk------VNIIPvIAKaDti-----sK~eL~~  196 (406)
T KOG3859|consen  128 AYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDSK------VNIIPVIAKADTI-----SKEELKR  196 (406)
T ss_pred             HHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhhh------hhhHHHHHHhhhh-----hHHHHHH
Confidence               1   122222   346899999998888777888898888888775      6889999999974     2233333


Q ss_pred             hchHHHHHHHhccc
Q 024586          136 KRSEALLKFVSPST  149 (265)
Q Consensus       136 ~~~~~l~~~i~~~~  149 (265)
                      -....+.+++.++.
T Consensus       197 FK~kimsEL~sngv  210 (406)
T KOG3859|consen  197 FKIKIMSELVSNGV  210 (406)
T ss_pred             HHHHHHHHHHhcCc
Confidence            33455556666554

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=98.62  E-value=5.3e-08  Score=76.80  Aligned_cols=113  Identities=19%  Similarity=0.092  Sum_probs=73.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCc--cEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPR--PVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI   76 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~--~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~   76 (265)
                      +|+.-||||||+-.+...+. .  ...-+|.+  .......+.+  ..+.||||.|.........     |.    -++.
T Consensus        19 LGEGCVGKtSLVLRy~EnkF-n--~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGP-----IY----YRgS   86 (218)
T KOG0088|consen   19 LGEGCVGKTSLVLRYVENKF-N--CKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGP-----IY----YRGS   86 (218)
T ss_pred             EcCCccchhHHHHHHHHhhc-c--hhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCc-----eE----EeCC
Confidence            58888999999988876542 1  11111111  0111222333  4679999999743221111     11    1478


Q ss_pred             cEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCC
Q 024586           77 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR  127 (265)
Q Consensus        77 d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~  127 (265)
                      +..|+|+++.+......-+.|+..|..+.|.+  .-+++|.||.|+...+.
T Consensus        87 nGalLVyDITDrdSFqKVKnWV~Elr~mlGne--i~l~IVGNKiDLEeeR~  135 (218)
T KOG0088|consen   87 NGALLVYDITDRDSFQKVKNWVLELRTMLGNE--IELLIVGNKIDLEEERQ  135 (218)
T ss_pred             CceEEEEeccchHHHHHHHHHHHHHHHHhCCe--eEEEEecCcccHHHhhh
Confidence            99999999887545566789999999999987  67899999999953333

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.61  E-value=7.8e-07  Score=82.19  Aligned_cols=72  Identities=17%  Similarity=0.190  Sum_probs=47.4

Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCcc
Q 024586           42 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ  121 (265)
Q Consensus        42 g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D  121 (265)
                      +..+.||||||..   ..++...+++........+|.+++|+  |+. ........++.+.+..     ...-+|+||.|
T Consensus       182 ~~DvViIDTaGr~---~~d~~lm~El~~i~~~~~p~e~lLVl--da~-~Gq~a~~~a~~F~~~~-----~~~g~IlTKlD  250 (429)
T TIGR01425       182 NFDIIIVDTSGRH---KQEDSLFEEMLQVAEAIQPDNIIFVM--DGS-IGQAAEAQAKAFKDSV-----DVGSVIITKLD  250 (429)
T ss_pred             CCCEEEEECCCCC---cchHHHHHHHHHHhhhcCCcEEEEEe--ccc-cChhHHHHHHHHHhcc-----CCcEEEEECcc
Confidence            5688999999973   34455666666665445788889994  432 2233344555555443     56789999999


Q ss_pred             CCC
Q 024586          122 LSL  124 (265)
Q Consensus       122 ~~~  124 (265)
                      ...
T Consensus       251 ~~a  253 (429)
T TIGR01425       251 GHA  253 (429)
T ss_pred             CCC
Confidence            853

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=98.60  E-value=3.4e-07  Score=91.88  Aligned_cols=108  Identities=15%  Similarity=0.189  Sum_probs=67.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCC---------------CCCCCccEEEEeee----------------CCeEEEEEe
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTF---------------QSEGPRPVMVSRSR----------------AGFTLNIVD   49 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~---------------~~~t~~~~~~~~~~----------------~g~~v~iiD   49 (265)
                      +|..++|||||+++|+..........               .+.|.........+                .+..++++|
T Consensus        25 iGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~inliD  104 (843)
T PLN00116         25 IAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNEYLINLID  104 (843)
T ss_pred             EcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCceEEEEEC
Confidence            58999999999999996542111110               01122221222223                266789999


Q ss_pred             CCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           50 TPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        50 TPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      |||..+       +...+...+  ..+|+.++|++... .+....+.+++.+.+..     .|+++++||+|..
T Consensus       105 tPGh~d-------F~~e~~~al--~~~D~ailVvda~~-Gv~~~t~~~~~~~~~~~-----~p~i~~iNK~D~~  163 (843)
T PLN00116        105 SPGHVD-------FSSEVTAAL--RITDGALVVVDCIE-GVCVQTETVLRQALGER-----IRPVLTVNKMDRC  163 (843)
T ss_pred             CCCHHH-------HHHHHHHHH--hhcCEEEEEEECCC-CCcccHHHHHHHHHHCC-----CCEEEEEECCccc
Confidence            999843       223333333  37799999966543 35566666776665543     7899999999984

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=98.58  E-value=7.3e-07  Score=70.09  Aligned_cols=119  Identities=14%  Similarity=0.156  Sum_probs=70.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeC---CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA---GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~---g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (265)
                      +|.-++|||+++..|+-.+........++..+.+....+-+   ...+.++||.|+.++..   +   .=+.|+  .-+|
T Consensus        15 cG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~---e---Lprhy~--q~aD   86 (198)
T KOG3883|consen   15 CGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQ---E---LPRHYF--QFAD   86 (198)
T ss_pred             ECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchh---h---hhHhHh--ccCc
Confidence            37789999999988886554344444444444444444332   23689999999976521   1   112233  2569


Q ss_pred             EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCC
Q 024586           78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRL  128 (265)
Q Consensus        78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~  128 (265)
                      +|++|++.++.+..+.-..+-+.|.+ +-+.--.|++++.|+.|+..+.+.
T Consensus        87 afVLVYs~~d~eSf~rv~llKk~Idk-~KdKKEvpiVVLaN~rdr~~p~~v  136 (198)
T KOG3883|consen   87 AFVLVYSPMDPESFQRVELLKKEIDK-HKDKKEVPIVVLANKRDRAEPREV  136 (198)
T ss_pred             eEEEEecCCCHHHHHHHHHHHHHHhh-ccccccccEEEEechhhcccchhc
Confidence            99999877653311111122233333 222234789999999999755543

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.58  E-value=6.6e-08  Score=88.05  Aligned_cols=80  Identities=24%  Similarity=0.286  Sum_probs=49.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC-----cccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHH-HHHHHHHHHhcC
Q 024586            1 MGKGGVGKSSTVNSIIGEK-----AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH-AIQLIKRFLLNK   74 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~-----~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~-~~~~i~~~l~~~   74 (265)
                      ||.+|||||||+|+|++..     .+.++..+++|.......  . +..+.++||||+......... ..+.++......
T Consensus       160 vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~--~-~~~~~l~DtPG~~~~~~~~~~l~~~~l~~~~~~~  236 (360)
T TIGR03597       160 VGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIP--L-DDGHSLYDTPGIINSHQMAHYLDKKDLKYITPKK  236 (360)
T ss_pred             ECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEE--e-CCCCEEEECCCCCChhHhhhhcCHHHHhhcCCCC
Confidence            6999999999999999854     346677777776655333  2 223579999999765311110 011222222334


Q ss_pred             CccEEEEEE
Q 024586           75 TIDVLLYVD   83 (265)
Q Consensus        75 ~~d~iL~V~   83 (265)
                      +.+...|+.
T Consensus       237 ~i~~~~~~l  245 (360)
T TIGR03597       237 EIKPKTYQL  245 (360)
T ss_pred             ccCceEEEe
Confidence            566777763

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=98.58  E-value=6.6e-07  Score=80.30  Aligned_cols=60  Identities=22%  Similarity=0.280  Sum_probs=36.8

Q ss_pred             CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHH-HHHhcCcCcCCcEEEEEeC
Q 024586           41 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRA-ITDNFGEQIWKRALIVLTH  119 (265)
Q Consensus        41 ~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~-l~~~~g~~~~~~~ivV~tk  119 (265)
                      .|..+.|+||+|.+...   ..   .+.      .+|++++|....    ...+.+.++. +.+.       .-++|+||
T Consensus       147 ~g~d~viieT~Gv~qs~---~~---i~~------~aD~vlvv~~p~----~gd~iq~~k~gi~E~-------aDIiVVNK  203 (332)
T PRK09435        147 AGYDVILVETVGVGQSE---TA---VAG------MVDFFLLLQLPG----AGDELQGIKKGIMEL-------ADLIVINK  203 (332)
T ss_pred             cCCCEEEEECCCCccch---hH---HHH------hCCEEEEEecCC----chHHHHHHHhhhhhh-------hheEEeeh
Confidence            46779999999997432   11   122      579999995322    1234444332 3232       23899999


Q ss_pred             ccCC
Q 024586          120 AQLS  123 (265)
Q Consensus       120 ~D~~  123 (265)
                      +|+.
T Consensus       204 aDl~  207 (332)
T PRK09435        204 ADGD  207 (332)
T ss_pred             hccc
Confidence            9985

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=98.58  E-value=1e-07  Score=74.30  Aligned_cols=106  Identities=15%  Similarity=0.130  Sum_probs=67.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|-.++||||++|.++....   +..-..|........+-+...+.+||.||......    ..+   +|.  +++++++
T Consensus        26 vGLq~sGKtt~Vn~ia~g~~---~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrs----mWe---ryc--R~v~aiv   93 (186)
T KOG0075|consen   26 VGLQNSGKTTLVNVIARGQY---LEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS----MWE---RYC--RGVSAIV   93 (186)
T ss_pred             EeeccCCcceEEEEEeeccc---hhhhcccccceeEEeccCceEEEEEecCCCccHHH----HHH---HHh--hcCcEEE
Confidence            58889999999999887542   11122344445566777788999999999853322    222   221  5899999


Q ss_pred             EEEecCCcC-CCHHHHHHHHHHHHhcCcC--cCCcEEEEEeCccC
Q 024586           81 YVDRLDVYR-VDNLDKQITRAITDNFGEQ--IWKRALIVLTHAQL  122 (265)
Q Consensus        81 ~V~~~d~~r-~~~~d~~~l~~l~~~~g~~--~~~~~ivV~tk~D~  122 (265)
                      ||++..+.. ++..-.+    +.....+.  ...|++|+.||.|+
T Consensus        94 Y~VDaad~~k~~~sr~E----L~~LL~k~~l~gip~LVLGnK~d~  134 (186)
T KOG0075|consen   94 YVVDAADPDKLEASRSE----LHDLLDKPSLTGIPLLVLGNKIDL  134 (186)
T ss_pred             EEeecCCcccchhhHHH----HHHHhcchhhcCCcEEEecccccC
Confidence            996544322 3333222    23333322  23799999999998

>PRK07560 elongation factor EF-2; Reviewed

Probab=98.57  E-value=2.5e-07  Score=91.65  Aligned_cols=108  Identities=15%  Similarity=0.240  Sum_probs=66.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCccccc---------CC------CCCCCccEEEEeee----CCeEEEEEeCCCCCCCCCCcH
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVS---------TF------QSEGPRPVMVSRSR----AGFTLNIVDTPGLIEGGYVNY   61 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~---------~~------~~~t~~~~~~~~~~----~g~~v~iiDTPG~~~~~~~~~   61 (265)
                      +|..++|||||+.+|+........         ++      .+.|.........+    .+..++++||||..+..    
T Consensus        26 igh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~df~----  101 (731)
T PRK07560         26 IAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVDFG----  101 (731)
T ss_pred             EEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccChH----
Confidence            588999999999999864321110         00      01122222222222    46789999999996531    


Q ss_pred             HHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           62 HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        62 ~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                         ..+...+  ..+|++++|++... .....++.+++...+..     .+.|+++||+|..
T Consensus       102 ---~~~~~~l--~~~D~avlVvda~~-g~~~~t~~~~~~~~~~~-----~~~iv~iNK~D~~  152 (731)
T PRK07560        102 ---GDVTRAM--RAVDGAIVVVDAVE-GVMPQTETVLRQALRER-----VKPVLFINKVDRL  152 (731)
T ss_pred             ---HHHHHHH--HhcCEEEEEEECCC-CCCccHHHHHHHHHHcC-----CCeEEEEECchhh
Confidence               2233322  27799999966543 35666667776654432     5679999999974

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=98.56  E-value=5.5e-08  Score=80.35  Aligned_cols=109  Identities=19%  Similarity=0.183  Sum_probs=80.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeC-CeE--EEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA-GFT--LNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~-g~~--v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (265)
                      ||..++|||+++.++....  +...+.++-.+.......++ |+.  +.+|||.|..+.+.        ++ -++-+..|
T Consensus        10 VGDga~GKT~ll~~~t~~~--fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDr--------lR-plsY~~td   78 (198)
T KOG0393|consen   10 VGDGAVGKTCLLISYTTNA--FPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDR--------LR-PLSYPQTD   78 (198)
T ss_pred             ECCCCcCceEEEEEeccCc--CcccccCeEEccceEEEEecCCCEEEEeeeecCCCccccc--------cc-ccCCCCCC
Confidence            6999999999998877663  33444444456666677785 775  58999999876532        11 22336889


Q ss_pred             EEEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           78 VLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        78 ~iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +||+|+++++.. +...-..++.++......   .|+|+|+||.|+.
T Consensus        79 vfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~---vpiiLVGtk~DLr  122 (198)
T KOG0393|consen   79 VFLLCFSVVSPESFENVKSKWIPEIKHHCPN---VPIILVGTKADLR  122 (198)
T ss_pred             EEEEEEEcCChhhHHHHHhhhhHHHHhhCCC---CCEEEEeehHHhh
Confidence            999999888644 555567888888887744   8999999999995

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.55  E-value=1.7e-06  Score=80.55  Aligned_cols=106  Identities=13%  Similarity=0.142  Sum_probs=73.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR-AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVL   79 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~-~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~i   79 (265)
                      ||.-.-|||||+.+|-+..++... ..+.|.+.-.+.... .|..+++.||||.        .++..|+.- -....|.+
T Consensus       159 MGHVDHGKTTLLD~lRks~VAA~E-~GGITQhIGAF~V~~p~G~~iTFLDTPGH--------aAF~aMRaR-GA~vtDIv  228 (683)
T KOG1145|consen  159 MGHVDHGKTTLLDALRKSSVAAGE-AGGITQHIGAFTVTLPSGKSITFLDTPGH--------AAFSAMRAR-GANVTDIV  228 (683)
T ss_pred             eecccCChhhHHHHHhhCceehhh-cCCccceeceEEEecCCCCEEEEecCCcH--------HHHHHHHhc-cCccccEE
Confidence            577888999999999998875433 344565544444332 6899999999997        555565531 11246999


Q ss_pred             EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccC
Q 024586           80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL  122 (265)
Q Consensus        80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~  122 (265)
                      ++|+..|+ .+-++..+.++..+..     ..|+|+.+||+|.
T Consensus       229 VLVVAadD-GVmpQT~EaIkhAk~A-----~VpiVvAinKiDk  265 (683)
T KOG1145|consen  229 VLVVAADD-GVMPQTLEAIKHAKSA-----NVPIVVAINKIDK  265 (683)
T ss_pred             EEEEEccC-CccHhHHHHHHHHHhc-----CCCEEEEEeccCC
Confidence            99988776 4555555555444443     3899999999996

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=98.54  E-value=2.6e-07  Score=82.86  Aligned_cols=79  Identities=20%  Similarity=0.280  Sum_probs=62.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC------------------eEEEEEeCCCCCCCCCCc--
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG------------------FTLNIVDTPGLIEGGYVN--   60 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g------------------~~v~iiDTPG~~~~~~~~--   60 (265)
                      ||.++||||||.|+++... +...+++.+|.+|......+..                  .++.++|.+|+-.+.+..  
T Consensus         8 VGlPNVGKSTlFnAlT~~~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs~GeG   86 (372)
T COG0012           8 VGLPNVGKSTLFNALTKAG-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGASKGEG   86 (372)
T ss_pred             ecCCCCcHHHHHHHHHcCC-ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCcccCCC
Confidence            6999999999999999988 5788899999988776554321                  147999999998764433  


Q ss_pred             --HHHHHHHHHHHhcCCccEEEEEEecC
Q 024586           61 --YHAIQLIKRFLLNKTIDVLLYVDRLD   86 (265)
Q Consensus        61 --~~~~~~i~~~l~~~~~d~iL~V~~~d   86 (265)
                        -+.+..|+      .+|+|+.|++..
T Consensus        87 LGNkFL~~IR------evdaI~hVVr~f  108 (372)
T COG0012          87 LGNKFLDNIR------EVDAIIHVVRCF  108 (372)
T ss_pred             cchHHHHhhh------hcCeEEEEEEec
Confidence              36777777      789999997765

>PRK00098 GTPase RsgA; Reviewed

Probab=98.53  E-value=2.1e-07  Score=82.60  Aligned_cols=54  Identities=22%  Similarity=0.364  Sum_probs=36.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCC-------CCCccEEEEeeeCCeEEEEEeCCCCCCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQS-------EGPRPVMVSRSRAGFTLNIVDTPGLIEGG   57 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~-------~t~~~~~~~~~~~g~~v~iiDTPG~~~~~   57 (265)
                      +|.+|||||||+|+|+|.....++....       +|+....+.....   ..++||||+.+.+
T Consensus       170 ~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~~~  230 (298)
T PRK00098        170 AGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSSFG  230 (298)
T ss_pred             ECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCccC
Confidence            6999999999999999986544444332       4443333333222   3699999997543

>PRK13768 GTPase; Provisional

Probab=98.50  E-value=1.1e-06  Score=76.29  Aligned_cols=80  Identities=16%  Similarity=0.069  Sum_probs=44.0

Q ss_pred             EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           44 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        44 ~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      .+.++||||..+..... .....+.+.+.....+++++|++... ..+..+......+....-....+|+++|+||+|+.
T Consensus        98 ~~~~~d~~g~~~~~~~~-~~~~~~~~~l~~~~~~~ii~liD~~~-~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~  175 (253)
T PRK13768         98 DYVLVDTPGQMELFAFR-ESGRKLVERLSGSSKSVVVFLIDAVL-AKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLL  175 (253)
T ss_pred             CEEEEeCCcHHHHHhhh-HHHHHHHHHHHhcCCeEEEEEechHH-hCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhc
Confidence            58999999986643222 12222233332223789999954432 23445544443332111001238999999999986


Q ss_pred             CC
Q 024586          124 LP  125 (265)
Q Consensus       124 ~~  125 (265)
                      ..
T Consensus       176 ~~  177 (253)
T PRK13768        176 SE  177 (253)
T ss_pred             Cc
Confidence            43

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.50  E-value=1.1e-06  Score=69.10  Aligned_cols=118  Identities=16%  Similarity=0.099  Sum_probs=71.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCccc-ccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVT-VSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~-~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (265)
                      +|.+|+|||-|+..++...... +++.  ...+....-..++|.  ++.||||.|..       ......+.+.  +++-
T Consensus        15 iG~aGtGKSCLLh~Fie~kfkDdssHT--iGveFgSrIinVGgK~vKLQIWDTAGQE-------rFRSVtRsYY--RGAA   83 (214)
T KOG0086|consen   15 IGSAGTGKSCLLHQFIENKFKDDSSHT--IGVEFGSRIVNVGGKTVKLQIWDTAGQE-------RFRSVTRSYY--RGAA   83 (214)
T ss_pred             eccCCCChhHHHHHHHHhhhcccccce--eeeeecceeeeecCcEEEEEEeecccHH-------HHHHHHHHHh--cccc
Confidence            5999999999999998765311 1111  111111223344554  56899999972       3333333333  4777


Q ss_pred             EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHH
Q 024586           78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE  131 (265)
Q Consensus        78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~  131 (265)
                      ..|+|+++........-..|+.-+..+..++  .-++++.||.|+.+.++.+..
T Consensus        84 GAlLVYD~TsrdsfnaLtnWL~DaR~lAs~n--IvviL~GnKkDL~~~R~Vtfl  135 (214)
T KOG0086|consen   84 GALLVYDITSRDSFNALTNWLTDARTLASPN--IVVILCGNKKDLDPEREVTFL  135 (214)
T ss_pred             ceEEEEeccchhhHHHHHHHHHHHHhhCCCc--EEEEEeCChhhcChhhhhhHH
Confidence            7888888775333333445666666655444  557788899999655554443

>PRK13796 GTPase YqeH; Provisional

Probab=98.48  E-value=1.3e-07  Score=86.25  Aligned_cols=53  Identities=32%  Similarity=0.455  Sum_probs=38.8

Q ss_pred             CCCCCCCHHHHHHHHhCCC-----cccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK-----AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEG   56 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~-----~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~   56 (265)
                      ||.+|||||||+|+|++..     ...++..+++|........  ++ ...++||||+...
T Consensus       166 vG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l--~~-~~~l~DTPGi~~~  223 (365)
T PRK13796        166 VGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPL--DD-GSFLYDTPGIIHR  223 (365)
T ss_pred             EcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEc--CC-CcEEEECCCcccc
Confidence            6999999999999999642     3346778888876554433  22 2479999999643

>TIGR00092 GTP-binding protein YchF

Probab=98.47  E-value=6.6e-07  Score=81.04  Aligned_cols=80  Identities=20%  Similarity=0.197  Sum_probs=62.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC-----------------eEEEEEeCCCCCCCCC----C
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-----------------FTLNIVDTPGLIEGGY----V   59 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g-----------------~~v~iiDTPG~~~~~~----~   59 (265)
                      ||.+++|||||.|+|++.....++.++.+|..+......+.+                 ..+.++|.||+..+..    .
T Consensus         8 vGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs~g~Gl   87 (368)
T TIGR00092         8 VGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGASKGEGL   87 (368)
T ss_pred             ECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchhcccCc
Confidence            699999999999999999865777888888888877666554                 2578999999987533    2


Q ss_pred             cHHHHHHHHHHHhcCCccEEEEEEecC
Q 024586           60 NYHAIQLIKRFLLNKTIDVLLYVDRLD   86 (265)
Q Consensus        60 ~~~~~~~i~~~l~~~~~d~iL~V~~~d   86 (265)
                      ....+..++      .+|++++|++..
T Consensus        88 gn~fL~~ir------~~d~l~hVvr~f  108 (368)
T TIGR00092        88 GNQFLANIR------EVDIIQHVVRCF  108 (368)
T ss_pred             chHHHHHHH------hCCEEEEEEeCC
Confidence            336677776      679999997764

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.45  E-value=1e-06  Score=83.80  Aligned_cols=67  Identities=16%  Similarity=0.181  Sum_probs=45.0

Q ss_pred             EEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           45 LNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        45 v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +.++|.||+.-+...+. +  ..+.|   ..+|+++||..... .++..+++++....+.     .+++.|+-||+|..
T Consensus       208 ivliDsPGld~~se~ts-w--id~~c---ldaDVfVlV~NaEn-tlt~sek~Ff~~vs~~-----KpniFIlnnkwDas  274 (749)
T KOG0448|consen  208 IVLIDSPGLDVDSELTS-W--IDSFC---LDADVFVLVVNAEN-TLTLSEKQFFHKVSEE-----KPNIFILNNKWDAS  274 (749)
T ss_pred             ceeccCCCCCCchhhhH-H--HHHHh---hcCCeEEEEecCcc-HhHHHHHHHHHHhhcc-----CCcEEEEechhhhh
Confidence            68999999965433222 1  22333   38899999965443 4788888887766654     26677777788985

>COG2229 Predicted GTPase [General function prediction only]

Probab=98.44  E-value=4.3e-06  Score=67.83  Aligned_cols=123  Identities=15%  Similarity=0.146  Sum_probs=72.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCccccc----CCCC-----CCCccEEEEeeeCC-eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVS----TFQS-----EGPRPVMVSRSRAG-FTLNIVDTPGLIEGGYVNYHAIQLIKRF   70 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~----~~~~-----~t~~~~~~~~~~~g-~~v~iiDTPG~~~~~~~~~~~~~~i~~~   70 (265)
                      +|..|+||||++.++.......+.    ....     +|...-.......+ ..+.++||||....        +-+-..
T Consensus        16 ~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF--------~fm~~~   87 (187)
T COG2229          16 IGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERF--------KFMWEI   87 (187)
T ss_pred             EcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHH--------HHHHHH
Confidence            488999999999999987632221    1111     22211122334444 78999999998332        222222


Q ss_pred             HhcCCccEEEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHHHHHhhchHHHHHHHhcc
Q 024586           71 LLNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPS  148 (265)
Q Consensus        71 l~~~~~d~iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~  148 (265)
                      +. +++...++++  |+.+ .+..+..+++.+.....    .|++|..||.|+.  +.++.        +.+++++..+
T Consensus        88 l~-~ga~gaivlV--Dss~~~~~~a~~ii~f~~~~~~----ip~vVa~NK~DL~--~a~pp--------e~i~e~l~~~  149 (187)
T COG2229          88 LS-RGAVGAIVLV--DSSRPITFHAEEIIDFLTSRNP----IPVVVAINKQDLF--DALPP--------EKIREALKLE  149 (187)
T ss_pred             Hh-CCcceEEEEE--ecCCCcchHHHHHHHHHhhccC----CCEEEEeeccccC--CCCCH--------HHHHHHHHhc
Confidence            22 4666666663  4333 33355667766665542    7999999999994  44444        4455555444

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.44  E-value=3.2e-07  Score=81.03  Aligned_cols=54  Identities=26%  Similarity=0.504  Sum_probs=35.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCC-------CCCCccEEEEeeeCCeEEEEEeCCCCCCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQ-------SEGPRPVMVSRSRAGFTLNIVDTPGLIEGG   57 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~-------~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~   57 (265)
                      +|.+|+|||||+|+|+|.....++...       .+|...........+   .++||||+.+..
T Consensus       167 ~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~---~liDtPG~~~~~  227 (287)
T cd01854         167 VGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGG---LLIDTPGFREFG  227 (287)
T ss_pred             ECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCC---EEEECCCCCccC
Confidence            699999999999999998654443322       233333333332223   599999996643

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=98.43  E-value=2.4e-06  Score=79.56  Aligned_cols=104  Identities=17%  Similarity=0.133  Sum_probs=62.5

Q ss_pred             CCCHHHHHHHHhCCCcccc--------------cCCCCCCCccEEEEeeeCC---eEEEEEeCCCCCCCCCCcHHHHHHH
Q 024586            5 GVGKSSTVNSIIGEKAVTV--------------STFQSEGPRPVMVSRSRAG---FTLNIVDTPGLIEGGYVNYHAIQLI   67 (265)
Q Consensus         5 g~GKSSliN~llg~~~~~~--------------~~~~~~t~~~~~~~~~~~g---~~v~iiDTPG~~~~~~~~~~~~~~i   67 (265)
                      .-|||||..+|+....+.-              ..-.+.|...+..+..+.+   ..+++|||||.-|.+..-.   ..+
T Consensus        70 DHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~EVs---Rsl  146 (650)
T KOG0462|consen   70 DHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGEVS---RSL  146 (650)
T ss_pred             cCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccceeh---ehh
Confidence            4699999999996433111              1122455555555665555   6789999999987654222   233


Q ss_pred             HHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           68 KRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        68 ~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      .      -+|.+|+|++... ....+.   +.-+...|..+  -.+|.|+||.|+.
T Consensus       147 a------ac~G~lLvVDA~q-GvqAQT---~anf~lAfe~~--L~iIpVlNKIDlp  190 (650)
T KOG0462|consen  147 A------ACDGALLVVDASQ-GVQAQT---VANFYLAFEAG--LAIIPVLNKIDLP  190 (650)
T ss_pred             h------hcCceEEEEEcCc-CchHHH---HHHHHHHHHcC--CeEEEeeeccCCC
Confidence            3      4578888844432 233333   33333333222  6789999999984

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=98.41  E-value=1.6e-06  Score=68.96  Aligned_cols=122  Identities=18%  Similarity=0.106  Sum_probs=73.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEee-eCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS-RAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~-~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (265)
                      ||.+-+|||||+..+...+.+..++. ..+.+....-.+ ..|  .++.+|||.|..       ......+.+.  +..-
T Consensus        14 igdstvgkssll~~ft~gkfaelsdp-tvgvdffarlie~~pg~riklqlwdtagqe-------rfrsitksyy--rnsv   83 (213)
T KOG0091|consen   14 IGDSTVGKSSLLRYFTEGKFAELSDP-TVGVDFFARLIELRPGYRIKLQLWDTAGQE-------RFRSITKSYY--RNSV   83 (213)
T ss_pred             EcCCcccHHHHHHHHhcCcccccCCC-ccchHHHHHHHhcCCCcEEEEEEeeccchH-------HHHHHHHHHh--hccc
Confidence            69999999999999998876555531 111111110111 123  467899999973       2233333333  2445


Q ss_pred             EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHHH
Q 024586           78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEV  132 (265)
Q Consensus        78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~~  132 (265)
                      .+|+|++++..+..+.-..+++.-+...+.....-+.+|.+|+|+...+..+.++
T Consensus        84 gvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EE  138 (213)
T KOG0091|consen   84 GVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEE  138 (213)
T ss_pred             ceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHH
Confidence            6788888876554455566776666555422223356789999997556666554

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=98.38  E-value=4.4e-07  Score=83.86  Aligned_cols=57  Identities=32%  Similarity=0.453  Sum_probs=47.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN   60 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~   60 (265)
                      ||-++|||||+||+|.|.+...+|..++.|.+.++...+   -.+.+.|+||+.-+.+..
T Consensus       320 VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls---~~v~LCDCPGLVfPSf~~  376 (562)
T KOG1424|consen  320 VGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLS---PSVCLCDCPGLVFPSFSP  376 (562)
T ss_pred             ecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcC---CCceecCCCCccccCCCc
Confidence            799999999999999999988899989888877765554   457899999997766554

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.36  E-value=3.7e-06  Score=78.38  Aligned_cols=107  Identities=13%  Similarity=0.079  Sum_probs=79.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeC---CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA---GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~---g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (265)
                      ||.--.|||||+..|-+.+++. +...+-|.+...+....+   ...++++||||.        +.+..|+.- =..-.|
T Consensus        11 mGHVDHGKTtLLD~IR~t~Va~-~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGH--------eAFt~mRaR-Ga~vtD   80 (509)
T COG0532          11 MGHVDHGKTTLLDKIRKTNVAA-GEAGGITQHIGAYQVPLDVIKIPGITFIDTPGH--------EAFTAMRAR-GASVTD   80 (509)
T ss_pred             eCcccCCccchhhhHhcCcccc-ccCCceeeEeeeEEEEeccCCCceEEEEcCCcH--------HHHHHHHhc-CCcccc
Confidence            5778899999999999998743 334456777777777764   478999999997        455555531 001258


Q ss_pred             EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      .+++|+..|+ .+-++..+.++.++...     -|++|..||.|..
T Consensus        81 IaILVVa~dD-Gv~pQTiEAI~hak~a~-----vP~iVAiNKiDk~  120 (509)
T COG0532          81 IAILVVAADD-GVMPQTIEAINHAKAAG-----VPIVVAINKIDKP  120 (509)
T ss_pred             EEEEEEEccC-CcchhHHHHHHHHHHCC-----CCEEEEEecccCC
Confidence            8999988876 46677777777776654     8999999999984

>PTZ00099 rab6; Provisional

Probab=98.35  E-value=5.1e-06  Score=68.10  Aligned_cols=75  Identities=16%  Similarity=0.145  Sum_probs=48.5

Q ss_pred             eeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEE
Q 024586           38 RSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRAL  114 (265)
Q Consensus        38 ~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~i  114 (265)
                      ..+++  .++.||||||......       ....++  .++|++|+|++++... +... ..++..+.+..++.  .|++
T Consensus        22 ~~~~~~~v~l~iwDt~G~e~~~~-------~~~~~~--~~ad~~ilv~D~t~~~sf~~~-~~w~~~i~~~~~~~--~pii   89 (176)
T PTZ00099         22 LYLDEGPVRLQLWDTAGQERFRS-------LIPSYI--RDSAAAIVVYDITNRQSFENT-TKWIQDILNERGKD--VIIA   89 (176)
T ss_pred             EEECCEEEEEEEEECCChHHhhh-------ccHHHh--CCCcEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCC--CeEE
Confidence            44444  5678999999843321       112222  4899999998887532 3333 45666665554433  6889


Q ss_pred             EEEeCccCCC
Q 024586          115 IVLTHAQLSL  124 (265)
Q Consensus       115 vV~tk~D~~~  124 (265)
                      +|+||+|+..
T Consensus        90 lVgNK~DL~~   99 (176)
T PTZ00099         90 LVGNKTDLGD   99 (176)
T ss_pred             EEEECccccc
Confidence            9999999953

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=98.35  E-value=9.8e-07  Score=67.16  Aligned_cols=95  Identities=22%  Similarity=0.277  Sum_probs=57.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      ||.+|+||+||.|+|.|+....        ..  ....+++..  -.|||||-+   ..+..+...+-.  ....+|+++
T Consensus         7 vG~~gcGKTtL~q~L~G~~~ly--------kK--TQAve~~d~--~~IDTPGEy---~~~~~~Y~aL~t--t~~dadvi~   69 (148)
T COG4917           7 VGQVGCGKTTLFQSLYGNDTLY--------KK--TQAVEFNDK--GDIDTPGEY---FEHPRWYHALIT--TLQDADVII   69 (148)
T ss_pred             ecccccCchhHHHHhhcchhhh--------cc--cceeeccCc--cccCCchhh---hhhhHHHHHHHH--Hhhccceee
Confidence            6999999999999999986311        01  112233221  269999964   223333333322  224889999


Q ss_pred             EEEecCCc--CCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           81 YVDRLDVY--RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~~--r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|..+++.  +|...           |..-..+++|-|+||+|+.
T Consensus        70 ~v~~and~~s~f~p~-----------f~~~~~k~vIgvVTK~DLa  103 (148)
T COG4917          70 YVHAANDPESRFPPG-----------FLDIGVKKVIGVVTKADLA  103 (148)
T ss_pred             eeecccCccccCCcc-----------cccccccceEEEEeccccc
Confidence            99766642  12221           2222236799999999996

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.33  E-value=5.9e-07  Score=76.32  Aligned_cols=99  Identities=23%  Similarity=0.372  Sum_probs=70.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHH-HHHHHHHHHhcCCccEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH-AIQLIKRFLLNKTIDVL   79 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~-~~~~i~~~l~~~~~d~i   79 (265)
                      +|-+.+|||||+..|.+..- ....+..+|..|.....+++|-.+.+.|.||+.++.....- -.+.|.   .++.+|++
T Consensus        68 IGfPSVGKStlLs~iT~T~S-eaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQvia---vArtaDli  143 (364)
T KOG1486|consen   68 IGFPSVGKSTLLSKITSTHS-EAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIA---VARTADLI  143 (364)
T ss_pred             ecCCCccHHHHHHHhhcchh-hhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEE---EeecccEE
Confidence            68999999999999998653 44456678899999999999999999999999987654431 111111   22478999


Q ss_pred             EEEEecCCcCCCHHHHHHHHHHHHhcC
Q 024586           80 LYVDRLDVYRVDNLDKQITRAITDNFG  106 (265)
Q Consensus        80 L~V~~~d~~r~~~~d~~~l~~l~~~~g  106 (265)
                      |+|  +|+++ .+..+..++.-.+..|
T Consensus       144 lMv--LDatk-~e~qr~~le~ELe~vG  167 (364)
T KOG1486|consen  144 LMV--LDATK-SEDQREILEKELEAVG  167 (364)
T ss_pred             EEE--ecCCc-chhHHHHHHHHHHHhc
Confidence            999  66544 3344556655444444

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=98.29  E-value=8.9e-07  Score=77.73  Aligned_cols=120  Identities=14%  Similarity=0.131  Sum_probs=75.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEee-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh-cCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS-RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL-NKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~-~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~-~~~~d~   78 (265)
                      ||.|++|||||+|+|++...... +.-..|.++..+... ..|..+.+.||-||...  .+-.........|. -..+|+
T Consensus       184 VGYTNaGKsTLikaLT~Aal~p~-drLFATLDpT~h~a~Lpsg~~vlltDTvGFisd--LP~~LvaAF~ATLeeVaeadl  260 (410)
T KOG0410|consen  184 VGYTNAGKSTLIKALTKAALYPN-DRLFATLDPTLHSAHLPSGNFVLLTDTVGFISD--LPIQLVAAFQATLEEVAEADL  260 (410)
T ss_pred             EeecCccHHHHHHHHHhhhcCcc-chhheeccchhhhccCCCCcEEEEeechhhhhh--CcHHHHHHHHHHHHHHhhcce
Confidence            69999999999999997654222 223345565555554 45788999999999753  22222222222221 137899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcC--cCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQ--IWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~--~~~~~ivV~tk~D~~  123 (265)
                      +|.|.+++......+....+..+..+.-+.  ...++|=|-||.|..
T Consensus       261 llHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e  307 (410)
T KOG0410|consen  261 LLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYE  307 (410)
T ss_pred             EEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccc
Confidence            999977775444444555666665543221  234567788888874

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.25  E-value=7.4e-06  Score=73.21  Aligned_cols=72  Identities=21%  Similarity=0.387  Sum_probs=43.7

Q ss_pred             EEEEeCCCCCCCCCCc-H---HHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCc
Q 024586           45 LNIVDTPGLIEGGYVN-Y---HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA  120 (265)
Q Consensus        45 v~iiDTPG~~~~~~~~-~---~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~  120 (265)
                      ++||||||+.++..+. .   .....+.=|  ...+|.|+++++..--.++++-..++..+.   |.+  ..+-||+||+
T Consensus       149 vtiVdtPGILsgeKQrisR~ydF~~v~~WF--aeR~D~IiLlfD~hKLDIsdEf~~vi~aLk---G~E--dkiRVVLNKA  221 (532)
T KOG1954|consen  149 VTIVDTPGILSGEKQRISRGYDFTGVLEWF--AERVDRIILLFDAHKLDISDEFKRVIDALK---GHE--DKIRVVLNKA  221 (532)
T ss_pred             eeeeccCcccccchhcccccCChHHHHHHH--HHhccEEEEEechhhccccHHHHHHHHHhh---CCc--ceeEEEeccc
Confidence            7999999998765331 0   111111111  247899999954332224455555555554   444  7788999999


Q ss_pred             cCC
Q 024586          121 QLS  123 (265)
Q Consensus       121 D~~  123 (265)
                      |..
T Consensus       222 DqV  224 (532)
T KOG1954|consen  222 DQV  224 (532)
T ss_pred             ccc
Confidence            985

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.24  E-value=1e-05  Score=62.80  Aligned_cols=118  Identities=18%  Similarity=0.173  Sum_probs=68.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCC-CCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHH-HHHHhcCCc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLI-KRFLLNKTI   76 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~-t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i-~~~l~~~~~   76 (265)
                      +|.-|+|||-|+..+...+  +..+.+.+ ..+.-....++.|.  ++.||||.|..        .+..+ +.+.  +++
T Consensus        17 igdmgvgkscllhqftekk--fmadcphtigvefgtriievsgqkiklqiwdtagqe--------rfravtrsyy--rga   84 (215)
T KOG0097|consen   17 IGDMGVGKSCLLHQFTEKK--FMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE--------RFRAVTRSYY--RGA   84 (215)
T ss_pred             EccccccHHHHHHHHHHHH--HhhcCCcccceecceeEEEecCcEEEEEEeecccHH--------HHHHHHHHHh--ccc
Confidence            5899999999999988765  23333222 11222223445554  56899999972        22333 3332  377


Q ss_pred             cEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHHH
Q 024586           77 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEV  132 (265)
Q Consensus        77 d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~~  132 (265)
                      -..|+|+++....-...-..|+..-..+-.++  --++++.||+|+...++.++++
T Consensus        85 agalmvyditrrstynhlsswl~dar~ltnpn--t~i~lignkadle~qrdv~yee  138 (215)
T KOG0097|consen   85 AGALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIFLIGNKADLESQRDVTYEE  138 (215)
T ss_pred             cceeEEEEehhhhhhhhHHHHHhhhhccCCCc--eEEEEecchhhhhhcccCcHHH
Confidence            77888988875221122223333333333222  3467789999997677777765

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=98.22  E-value=6.8e-07  Score=76.81  Aligned_cols=76  Identities=18%  Similarity=0.127  Sum_probs=34.2

Q ss_pred             EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHH---HHHHHHhcCcCcCCcEEEEEeCc
Q 024586           44 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQI---TRAITDNFGEQIWKRALIVLTHA  120 (265)
Q Consensus        44 ~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~---l~~l~~~~g~~~~~~~ivV~tk~  120 (265)
                      .+.++||||..+--... .....+-+.+.....-+++++  +|+..+.+....+   +-.+.-+.  ....|.+.|+||+
T Consensus        92 ~y~l~DtPGQiElf~~~-~~~~~i~~~L~~~~~~~~v~L--vD~~~~~~~~~f~s~~L~s~s~~~--~~~lP~vnvlsK~  166 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHS-DSGRKIVERLQKNGRLVVVFL--VDSSFCSDPSKFVSSLLLSLSIML--RLELPHVNVLSKI  166 (238)
T ss_dssp             SEEEEE--SSHHHHHHS-HHHHHHHHTSSS----EEEEE--E-GGG-SSHHHHHHHHHHHHHHHH--HHTSEEEEEE--G
T ss_pred             cEEEEeCCCCEEEEEec-hhHHHHHHHHhhhcceEEEEE--EecccccChhhHHHHHHHHHHHHh--hCCCCEEEeeecc
Confidence            58999999986542222 333344444443333456666  4554544322221   11222121  1228999999999


Q ss_pred             cCCC
Q 024586          121 QLSL  124 (265)
Q Consensus       121 D~~~  124 (265)
                      |+.+
T Consensus       167 Dl~~  170 (238)
T PF03029_consen  167 DLLS  170 (238)
T ss_dssp             GGS-
T ss_pred             Cccc
Confidence            9963

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=98.22  E-value=3.4e-07  Score=70.31  Aligned_cols=115  Identities=15%  Similarity=0.088  Sum_probs=70.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCC-CCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~-t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (265)
                      +|.+++||+-|+-.+-... +-.+.+-++ ..+........++.  ++.+|||.|......       ....+.  +.+|
T Consensus         3 lgds~~gktcllir~kdga-fl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrs-------vt~ayy--rda~   72 (192)
T KOG0083|consen    3 LGDSCTGKTCLLIRFKDGA-FLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRS-------VTHAYY--RDAD   72 (192)
T ss_pred             cccCccCceEEEEEeccCc-eecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhh-------hhHhhh--cccc
Confidence            6999999998764433222 112222111 11111223344554  568999999843322       112122  4789


Q ss_pred             EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCC
Q 024586           78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR  127 (265)
Q Consensus        78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~  127 (265)
                      ++|+++++......++-..|+..|.+.....  ..++++.||+|+.+.+.
T Consensus        73 allllydiankasfdn~~~wlsei~ey~k~~--v~l~llgnk~d~a~er~  120 (192)
T KOG0083|consen   73 ALLLLYDIANKASFDNCQAWLSEIHEYAKEA--VALMLLGNKCDLAHERA  120 (192)
T ss_pred             eeeeeeecccchhHHHHHHHHHHHHHHHHhh--HhHhhhccccccchhhc
Confidence            9999998876445566778998888765433  56789999999975444

>PRK14845 translation initiation factor IF-2; Provisional

Probab=98.17  E-value=2.8e-05  Score=79.01  Aligned_cols=102  Identities=10%  Similarity=0.028  Sum_probs=65.8

Q ss_pred             CCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC------------------eEEEEEeCCCCCCCCCCcHHHHHHH
Q 024586            6 VGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG------------------FTLNIVDTPGLIEGGYVNYHAIQLI   67 (265)
Q Consensus         6 ~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g------------------~~v~iiDTPG~~~~~~~~~~~~~~i   67 (265)
                      ++||||+.+|.+.+++. +...+.|.+.-.+....+.                  ..+++|||||..+.        ..+
T Consensus       472 ~~KTtLLD~iR~t~v~~-~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F--------~~l  542 (1049)
T PRK14845        472 VHNTTLLDKIRKTRVAK-KEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAF--------TSL  542 (1049)
T ss_pred             cccccHHHHHhCCCccc-ccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHH--------HHH
Confidence            57999999999988733 3333455544443333321                  12799999996321        111


Q ss_pred             HHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           68 KRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        68 ~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ... ....+|++++|++++. .+...+...++.+...     ..|+++|+||+|+.
T Consensus       543 r~~-g~~~aDivlLVVDa~~-Gi~~qT~e~I~~lk~~-----~iPiIVViNKiDL~  591 (1049)
T PRK14845        543 RKR-GGSLADLAVLVVDINE-GFKPQTIEAINILRQY-----KTPFVVAANKIDLI  591 (1049)
T ss_pred             HHh-hcccCCEEEEEEECcc-cCCHhHHHHHHHHHHc-----CCCEEEEEECCCCc
Confidence            111 1246899999977664 3666777777766553     27999999999985

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.16  E-value=3.9e-06  Score=74.19  Aligned_cols=79  Identities=24%  Similarity=0.289  Sum_probs=60.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC-----------------eEEEEEeCCCCCCCCCCc---
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-----------------FTLNIVDTPGLIEGGYVN---   60 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g-----------------~~v~iiDTPG~~~~~~~~---   60 (265)
                      ||.++|||||+.|+|+..... ..+++.+|.++......+..                 -.++++|..|+-.+....   
T Consensus        26 VGlPNvGKST~fnalT~~~a~-~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs~G~GL  104 (391)
T KOG1491|consen   26 VGLPNVGKSTFFNALTKSKAG-AANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGASAGEGL  104 (391)
T ss_pred             eeCCCCchHHHHHHHhcCCCC-ccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCcccCcCc
Confidence            699999999999999998864 77888899887766544321                 147999999997654433   


Q ss_pred             -HHHHHHHHHHHhcCCccEEEEEEecC
Q 024586           61 -YHAIQLIKRFLLNKTIDVLLYVDRLD   86 (265)
Q Consensus        61 -~~~~~~i~~~l~~~~~d~iL~V~~~d   86 (265)
                       -..++.|+      .+|+++.|++..
T Consensus       105 GN~FLs~iR------~vDaifhVVr~f  125 (391)
T KOG1491|consen  105 GNKFLSHIR------HVDAIFHVVRAF  125 (391)
T ss_pred             hHHHHHhhh------hccceeEEEEec
Confidence             36677776      779999997654

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=98.16  E-value=2.5e-05  Score=69.48  Aligned_cols=129  Identities=17%  Similarity=0.255  Sum_probs=71.2

Q ss_pred             eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEe
Q 024586           40 RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLT  118 (265)
Q Consensus        40 ~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~t  118 (265)
                      -+.+++.|.||||..       ++...|..-  ...+|+.+++  +|+.. +-++. .-...|....|-   +++++.+|
T Consensus        83 T~KRkFIiADTPGHe-------QYTRNMaTG--ASTadlAIlL--VDAR~Gvl~QT-rRHs~I~sLLGI---rhvvvAVN  147 (431)
T COG2895          83 TEKRKFIIADTPGHE-------QYTRNMATG--ASTADLAILL--VDARKGVLEQT-RRHSFIASLLGI---RHVVVAVN  147 (431)
T ss_pred             cccceEEEecCCcHH-------HHhhhhhcc--cccccEEEEE--EecchhhHHHh-HHHHHHHHHhCC---cEEEEEEe
Confidence            356789999999973       444444321  1356887777  35422 33332 233455566654   89999999


Q ss_pred             CccCCCCCCCCHHHHHhhchHHHHHHHhccccccccccccCCchhHhhhcCCcCCCCccccccCCCCCCC--hHHHHHHH
Q 024586          119 HAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAW--IPNLVKTI  196 (265)
Q Consensus       119 k~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ip~~~~~n~~~~~~~~~~~~~lp~~~~W--~~~L~~~i  196 (265)
                      |+|+.+.++..+++..    +.+..+-.+-+...     ...||+......+....+        ...+|  =|.|++.+
T Consensus       148 KmDLvdy~e~~F~~I~----~dy~~fa~~L~~~~-----~~~IPiSAl~GDNV~~~s--------~~mpWY~GptLLe~L  210 (431)
T COG2895         148 KMDLVDYSEEVFEAIV----ADYLAFAAQLGLKD-----VRFIPISALLGDNVVSKS--------ENMPWYKGPTLLEIL  210 (431)
T ss_pred             eecccccCHHHHHHHH----HHHHHHHHHcCCCc-----ceEEechhccCCcccccc--------cCCCcccCccHHHHH
Confidence            9999766654454443    33444444332111     123677655443333322        22456  46677765


Q ss_pred             HHHh
Q 024586          197 TEVV  200 (265)
Q Consensus       197 ~~~~  200 (265)
                      ...-
T Consensus       211 E~v~  214 (431)
T COG2895         211 ETVE  214 (431)
T ss_pred             hhcc
Confidence            5443

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.14  E-value=1.7e-05  Score=82.44  Aligned_cols=115  Identities=17%  Similarity=0.187  Sum_probs=66.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCC--------CCCCCccEEEEeeeCCeEEEEEeCCCCCCCCC----Cc----HHHH
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTF--------QSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY----VN----YHAI   64 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~--------~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~----~~----~~~~   64 (265)
                      ||.+|+||||+++.- |.+. .....        .+.|..   +..-+. .+-.++||+|.+-...    .+    ...+
T Consensus       117 iG~~gsGKtt~l~~s-gl~~-pl~~~~~~~~~~~~~~t~~---c~wwf~-~~avliDtaG~y~~~~~~~~~~~~~W~~fL  190 (1169)
T TIGR03348       117 IGPPGSGKTTLLQNS-GLKF-PLAERLGAAALRGVGGTRN---CDWWFT-DEAVLIDTAGRYTTQDSDPEEDAAAWLGFL  190 (1169)
T ss_pred             ECCCCCchhHHHHhC-CCCC-cCchhhccccccCCCCCcc---cceEec-CCEEEEcCCCccccCCCcccccHHHHHHHH
Confidence            699999999999876 5542 22210        011111   111122 2456999999654322    11    2333


Q ss_pred             HHHHHHHhcCCccEEEEEEecCCcC-CCHH--------HHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           65 QLIKRFLLNKTIDVLLYVDRLDVYR-VDNL--------DKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        65 ~~i~~~l~~~~~d~iL~V~~~d~~r-~~~~--------d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ..+++.-....+|.||++++++.-- .+..        -+.-++.+.+.+|-.  .|++||+||+|+.
T Consensus       191 ~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~--~PVYvv~Tk~Dll  256 (1169)
T TIGR03348       191 GLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGAR--FPVYLVLTKADLL  256 (1169)
T ss_pred             HHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCC--CCEEEEEecchhh
Confidence            3444333345789999997765311 1222        223445566666654  8999999999975

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=98.14  E-value=1.9e-05  Score=77.32  Aligned_cols=108  Identities=12%  Similarity=0.159  Sum_probs=72.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCccc--ccCC---------------CCCCCccEEEEeeeCC-eEEEEEeCCCCCCCCCCcHH
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVT--VSTF---------------QSEGPRPVMVSRSRAG-FTLNIVDTPGLIEGGYVNYH   62 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~--~~~~---------------~~~t~~~~~~~~~~~g-~~v~iiDTPG~~~~~~~~~~   62 (265)
                      +|...+|||||.-+|+-.....  .+..               .+.|......+..+.+ ..+++|||||..|...   +
T Consensus        16 ~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVDFt~---E   92 (697)
T COG0480          16 VAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVDFTI---E   92 (697)
T ss_pred             EeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccccHH---H
Confidence            3667899999999998432111  1111               1233344445677886 9999999999977542   2


Q ss_pred             HHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           63 AIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        63 ~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ....++      -.|..+.|++... .+..+....++...+..     .|.++++||+|..
T Consensus        93 V~rslr------vlDgavvVvdave-GV~~QTEtv~rqa~~~~-----vp~i~fiNKmDR~  141 (697)
T COG0480          93 VERSLR------VLDGAVVVVDAVE-GVEPQTETVWRQADKYG-----VPRILFVNKMDRL  141 (697)
T ss_pred             HHHHHH------hhcceEEEEECCC-CeeecHHHHHHHHhhcC-----CCeEEEEECcccc
Confidence            333333      5588888865553 46666677777777664     8999999999974

>TIGR00750 lao LAO/AO transport system ATPase

Probab=98.13  E-value=3.3e-05  Score=68.67  Aligned_cols=60  Identities=20%  Similarity=0.261  Sum_probs=35.3

Q ss_pred             CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHH-HHHHHhcCcCcCCcEEEEEeC
Q 024586           41 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQIT-RAITDNFGEQIWKRALIVLTH  119 (265)
Q Consensus        41 ~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l-~~l~~~~g~~~~~~~ivV~tk  119 (265)
                      .|..+.|+||||.+...      .+.+.      .+|.++++....    ...+.+.+ +.+.+       ++.++|+||
T Consensus       125 ~g~D~viidT~G~~~~e------~~i~~------~aD~i~vv~~~~----~~~el~~~~~~l~~-------~~~ivv~NK  181 (300)
T TIGR00750       125 AGYDVIIVETVGVGQSE------VDIAN------MADTFVVVTIPG----TGDDLQGIKAGLME-------IADIYVVNK  181 (300)
T ss_pred             CCCCEEEEeCCCCchhh------hHHHH------hhceEEEEecCC----ccHHHHHHHHHHhh-------hccEEEEEc
Confidence            36778999999986322      12222      458888883222    11232222 22221       678999999


Q ss_pred             ccCC
Q 024586          120 AQLS  123 (265)
Q Consensus       120 ~D~~  123 (265)
                      +|+.
T Consensus       182 ~Dl~  185 (300)
T TIGR00750       182 ADGE  185 (300)
T ss_pred             cccc
Confidence            9985

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=98.13  E-value=1.4e-05  Score=75.15  Aligned_cols=180  Identities=14%  Similarity=0.189  Sum_probs=95.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCc--------------cccc----------------CCCCCCCccEEEEeeeCCeEEEEEeC
Q 024586            1 MGKGGVGKSSTVNSIIGEKA--------------VTVS----------------TFQSEGPRPVMVSRSRAGFTLNIVDT   50 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~--------------~~~~----------------~~~~~t~~~~~~~~~~~g~~v~iiDT   50 (265)
                      +|...+|||||+-.|+-.-.              +..+                ...+.|.......++-....++++|+
T Consensus       183 ~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~~~tliDa  262 (603)
T KOG0458|consen  183 LGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSKIVTLIDA  262 (603)
T ss_pred             EeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCceeEEEecC
Confidence            58899999999988873200              0000                01123333333344445667899999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCH------HHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           51 PGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDN------LDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~------~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      ||..+..   ..   +|...   ..+|+.++|++.+...|+.      +.++.+. +.+.+|-   ...||++||+|+..
T Consensus       263 PGhkdFi---~n---mi~g~---sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~-llr~Lgi---~qlivaiNKmD~V~  329 (603)
T KOG0458|consen  263 PGHKDFI---PN---MISGA---SQADVAVLVVDASTGEFESGFDPGGQTREHAL-LLRSLGI---SQLIVAINKMDLVS  329 (603)
T ss_pred             CCccccc---hh---hhccc---cccceEEEEEECCcchhhhccCCCCchHHHHH-HHHHcCc---ceEEEEeecccccC
Confidence            9975431   12   22211   2678888886655433322      2233333 3445553   78999999999964


Q ss_pred             CCCCCHHHHHhhchHHHHHHHhccccccccccccCCchhHhhhcCCcCCCCccccccCCCCCCC--hHHHHHHHHHHhhC
Q 024586          125 PDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAW--IPNLVKTITEVVLN  202 (265)
Q Consensus       125 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ip~~~~~n~~~~~~~~~~~~~lp~~~~W--~~~L~~~i~~~~~~  202 (265)
                      .++..+++.    ...+..++.+.++|...+  +.-||+.-.++.+...+.  .+   +.-..|  =+.|++.+....++
T Consensus       330 Wsq~RF~eI----k~~l~~fL~~~~gf~es~--v~FIPiSGl~GeNL~k~~--~~---~~l~~WY~Gp~LL~~id~~~~p  398 (603)
T KOG0458|consen  330 WSQDRFEEI----KNKLSSFLKESCGFKESS--VKFIPISGLSGENLIKIE--QE---NELSQWYKGPTLLSQIDSFKIP  398 (603)
T ss_pred             ccHHHHHHH----HHHHHHHHHHhcCcccCC--cceEecccccCCcccccc--cc---hhhhhhhcCChHHHHHhhccCC
Confidence            443333333    355777774444444332  124666433322211110  11   112356  57888888886666


Q ss_pred             CC
Q 024586          203 GS  204 (265)
Q Consensus       203 ~~  204 (265)
                      +.
T Consensus       399 ~~  400 (603)
T KOG0458|consen  399 ER  400 (603)
T ss_pred             CC
Confidence            53

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.11  E-value=7.2e-06  Score=66.48  Aligned_cols=114  Identities=14%  Similarity=0.131  Sum_probs=71.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|--|+||||+++.|--.+...+    ..|........++.+.++++||.-|...-....+.+.         ...++++
T Consensus        23 lGLD~AGKTTILykLk~~E~vtt----vPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~---------~~t~~lI   89 (181)
T KOG0070|consen   23 VGLDAAGKTTILYKLKLGEIVTT----VPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYF---------QNTQGLI   89 (181)
T ss_pred             EeccCCCceeeeEeeccCCcccC----CCccccceeEEEEcceEEEEEecCCCcccccchhhhc---------cCCcEEE
Confidence            57889999999998876664333    2344444556777899999999998844333332222         3668999


Q ss_pred             EEEecCC-cCCCHHHHHHHHHHHHhcCcC--cCCcEEEEEeCccCCCCCCCCHHHH
Q 024586           81 YVDRLDV-YRVDNLDKQITRAITDNFGEQ--IWKRALIVLTHAQLSLPDRLDYEVF  133 (265)
Q Consensus        81 ~V~~~d~-~r~~~~d~~~l~~l~~~~g~~--~~~~~ivV~tk~D~~~~~~~~~~~~  133 (265)
                      ||++..+ .|+.+    .-+.+.++....  ...|+++..||-|+  +...+..+.
T Consensus        90 fVvDS~Dr~Ri~e----ak~eL~~~l~~~~l~~~~llv~aNKqD~--~~als~~ei  139 (181)
T KOG0070|consen   90 FVVDSSDRERIEE----AKEELHRMLAEPELRNAPLLVFANKQDL--PGALSAAEI  139 (181)
T ss_pred             EEEeCCcHHHHHH----HHHHHHHHHcCcccCCceEEEEechhhc--cccCCHHHH
Confidence            9944332 22322    333444444322  24789999999998  455555443

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=98.10  E-value=3.9e-05  Score=71.74  Aligned_cols=75  Identities=19%  Similarity=0.275  Sum_probs=45.9

Q ss_pred             EEEEEeCCCCCCCCC------CcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEE
Q 024586           44 TLNIVDTPGLIEGGY------VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVL  117 (265)
Q Consensus        44 ~v~iiDTPG~~~~~~------~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~  117 (265)
                      .+.++|.||+..+-.      ..+.+...-+.++  ..+++|++|+.  +..++.+--.+-..+.++-..+  +++|+|+
T Consensus       413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM--~NPNAIILCIQ--DGSVDAERSnVTDLVsq~DP~G--rRTIfVL  486 (980)
T KOG0447|consen  413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYM--QNPNAIILCIQ--DGSVDAERSIVTDLVSQMDPHG--RRTIFVL  486 (980)
T ss_pred             eeEEecCCchhhhhcccccccchHHHHHHHHHHh--cCCCeEEEEec--cCCcchhhhhHHHHHHhcCCCC--CeeEEEE
Confidence            468999999987522      1223444444444  47899999953  2244443333334444443233  8999999


Q ss_pred             eCccCCC
Q 024586          118 THAQLSL  124 (265)
Q Consensus       118 tk~D~~~  124 (265)
                      ||.|++.
T Consensus       487 TKVDlAE  493 (980)
T KOG0447|consen  487 TKVDLAE  493 (980)
T ss_pred             eecchhh
Confidence            9999964

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.08  E-value=1.4e-06  Score=72.71  Aligned_cols=71  Identities=20%  Similarity=0.224  Sum_probs=45.1

Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCcc
Q 024586           42 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ  121 (265)
Q Consensus        42 g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D  121 (265)
                      +..+.+|||||..   ..+.+.+++++.++....++-+++|.+...   ...+...+....+.+     ...=+++||.|
T Consensus        83 ~~D~vlIDT~Gr~---~~d~~~~~el~~~~~~~~~~~~~LVlsa~~---~~~~~~~~~~~~~~~-----~~~~lIlTKlD  151 (196)
T PF00448_consen   83 GYDLVLIDTAGRS---PRDEELLEELKKLLEALNPDEVHLVLSATM---GQEDLEQALAFYEAF-----GIDGLILTKLD  151 (196)
T ss_dssp             TSSEEEEEE-SSS---STHHHHHHHHHHHHHHHSSSEEEEEEEGGG---GGHHHHHHHHHHHHS-----STCEEEEESTT
T ss_pred             CCCEEEEecCCcc---hhhHHHHHHHHHHhhhcCCccceEEEeccc---ChHHHHHHHHHhhcc-----cCceEEEEeec
Confidence            4568999999984   344566667776664446788888855543   234444455555554     34467799999


Q ss_pred             CC
Q 024586          122 LS  123 (265)
Q Consensus       122 ~~  123 (265)
                      ..
T Consensus       152 et  153 (196)
T PF00448_consen  152 ET  153 (196)
T ss_dssp             SS
T ss_pred             CC
Confidence            85

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.07  E-value=2.1e-05  Score=62.81  Aligned_cols=108  Identities=17%  Similarity=0.208  Sum_probs=71.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|--++|||||++.|-..+.+..    ..|.+|......++|.+++.+|.-|..       ++....+.|+  +.+|+++
T Consensus        26 lGLDNAGKTTLLHMLKdDrl~qh----vPTlHPTSE~l~Ig~m~ftt~DLGGH~-------qArr~wkdyf--~~v~~iv   92 (193)
T KOG0077|consen   26 LGLDNAGKTTLLHMLKDDRLGQH----VPTLHPTSEELSIGGMTFTTFDLGGHL-------QARRVWKDYF--PQVDAIV   92 (193)
T ss_pred             EeecCCchhhHHHHHcccccccc----CCCcCCChHHheecCceEEEEccccHH-------HHHHHHHHHH--hhhceeE
Confidence            47789999999999887764322    246677777888999999999998862       3344445444  4778998


Q ss_pred             EEEecCC-cCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           81 YVDRLDV-YRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~-~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      |.++.-+ .|+. +.+..++.+...- .-.+.|+++..||.|..
T Consensus        93 ~lvda~d~er~~-es~~eld~ll~~e-~la~vp~lilgnKId~p  134 (193)
T KOG0077|consen   93 YLVDAYDQERFA-ESKKELDALLSDE-SLATVPFLILGNKIDIP  134 (193)
T ss_pred             eeeehhhHHHhH-HHHHHHHHHHhHH-HHhcCcceeecccccCC
Confidence            8855433 2232 2233333332211 01468999999999984

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=98.03  E-value=1.2e-05  Score=69.32  Aligned_cols=76  Identities=22%  Similarity=0.292  Sum_probs=42.2

Q ss_pred             eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHH---HHHHHHHHhcCcCcCCcEEEEEeC
Q 024586           43 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDK---QITRAITDNFGEQIWKRALIVLTH  119 (265)
Q Consensus        43 ~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~---~~l~~l~~~~g~~~~~~~ivV~tk  119 (265)
                      ..+.+|||||..+. +.....-..|...+....+-+++||+  |..|.+.-..   .++-+-.-++.  ...|+|+|+||
T Consensus       116 ~~~~liDTPGQIE~-FtWSAsGsIIte~lass~ptvv~Yvv--Dt~rs~~p~tFMSNMlYAcSilyk--tklp~ivvfNK  190 (366)
T KOG1532|consen  116 FDYVLIDTPGQIEA-FTWSASGSIITETLASSFPTVVVYVV--DTPRSTSPTTFMSNMLYACSILYK--TKLPFIVVFNK  190 (366)
T ss_pred             cCEEEEcCCCceEE-EEecCCccchHhhHhhcCCeEEEEEe--cCCcCCCchhHHHHHHHHHHHHHh--ccCCeEEEEec
Confidence            34789999998773 11111112334444445788999994  4434222211   22222222221  22799999999


Q ss_pred             ccCC
Q 024586          120 AQLS  123 (265)
Q Consensus       120 ~D~~  123 (265)
                      +|+.
T Consensus       191 ~Dv~  194 (366)
T KOG1532|consen  191 TDVS  194 (366)
T ss_pred             cccc
Confidence            9985

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=98.02  E-value=7e-06  Score=71.84  Aligned_cols=62  Identities=27%  Similarity=0.316  Sum_probs=46.3

Q ss_pred             CCCCCCCHHHHHHHHhCC-----CcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHH
Q 024586            1 MGKGGVGKSSTVNSIIGE-----KAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH   62 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~-----~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~   62 (265)
                      +|-+|+|||||||++...     ..+.+++.++.|..........+...+.++||||+..+...+.+
T Consensus       149 vGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~I~~~e  215 (335)
T KOG2485|consen  149 VGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPSIVDVE  215 (335)
T ss_pred             EcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCCCCCCHH
Confidence            689999999999998753     34567777777766554344445567899999999888766654

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.02  E-value=4.2e-05  Score=63.59  Aligned_cols=111  Identities=17%  Similarity=0.201  Sum_probs=67.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh-cCCccEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL-NKTIDVL   79 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~-~~~~d~i   79 (265)
                      +|.+++|||||.-.|.....  ...+  +..++.......+...+++||.||..       .....+..++. ...+-+|
T Consensus        44 ~Gl~dSGKT~LF~qL~~gs~--~~Tv--tSiepn~a~~r~gs~~~~LVD~PGH~-------rlR~kl~e~~~~~~~akai  112 (238)
T KOG0090|consen   44 VGLSDSGKTSLFTQLITGSH--RGTV--TSIEPNEATYRLGSENVTLVDLPGHS-------RLRRKLLEYLKHNYSAKAI  112 (238)
T ss_pred             EecCCCCceeeeeehhcCCc--cCee--eeeccceeeEeecCcceEEEeCCCcH-------HHHHHHHHHccccccceeE
Confidence            59999999999988876532  1111  22333344455555668999999973       22333333332 2467788


Q ss_pred             EEEEecCCcCCCHHHHHHHHHHHHhcC----cCcCCcEEEEEeCccCCC
Q 024586           80 LYVDRLDVYRVDNLDKQITRAITDNFG----EQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        80 L~V~~~d~~r~~~~d~~~l~~l~~~~g----~~~~~~~ivV~tk~D~~~  124 (265)
                      +||  +|+..+..+-+...+.+-...-    ..-..|+++.-||.|+..
T Consensus       113 VFV--VDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~t  159 (238)
T KOG0090|consen  113 VFV--VDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFT  159 (238)
T ss_pred             EEE--EeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhh
Confidence            888  4544455555555555444332    223478999999999853

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.01  E-value=5.6e-06  Score=75.50  Aligned_cols=72  Identities=15%  Similarity=0.087  Sum_probs=44.9

Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCcc
Q 024586           42 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ  121 (265)
Q Consensus        42 g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D  121 (265)
                      +..+.||||||-.   ..+...++++.+.+....+|.+++|  +++..-...-..+++.+..      ....=+++||.|
T Consensus       320 ~~DvVLIDTaGRs---~kd~~lm~EL~~~lk~~~PdevlLV--LsATtk~~d~~~i~~~F~~------~~idglI~TKLD  388 (436)
T PRK11889        320 RVDYILIDTAGKN---YRASETVEEMIETMGQVEPDYICLT--LSASMKSKDMIEIITNFKD------IHIDGIVFTKFD  388 (436)
T ss_pred             CCCEEEEeCcccc---CcCHHHHHHHHHHHhhcCCCeEEEE--ECCccChHHHHHHHHHhcC------CCCCEEEEEccc
Confidence            4578999999984   3445566777777655567888888  4432211222344444433      145678899999


Q ss_pred             CCC
Q 024586          122 LSL  124 (265)
Q Consensus       122 ~~~  124 (265)
                      ...
T Consensus       389 ET~  391 (436)
T PRK11889        389 ETA  391 (436)
T ss_pred             CCC
Confidence            853

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.99  E-value=5.9e-05  Score=68.64  Aligned_cols=71  Identities=11%  Similarity=0.150  Sum_probs=44.4

Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCcc
Q 024586           42 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ  121 (265)
Q Consensus        42 g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D  121 (265)
                      +..+.+|||||..   ..+.+.++++..+.....+|.+++|  +++. ...  .++.+.+.. |..  ....-+++||.|
T Consensus       285 ~~D~VLIDTAGr~---~~d~~~l~EL~~l~~~~~p~~~~LV--Lsag-~~~--~d~~~i~~~-f~~--l~i~glI~TKLD  353 (407)
T PRK12726        285 CVDHILIDTVGRN---YLAEESVSEISAYTDVVHPDLTCFT--FSSG-MKS--ADVMTILPK-LAE--IPIDGFIITKMD  353 (407)
T ss_pred             CCCEEEEECCCCC---ccCHHHHHHHHHHhhccCCceEEEE--CCCc-ccH--HHHHHHHHh-cCc--CCCCEEEEEccc
Confidence            4678999999984   3456677777776655567887788  4431 222  233333322 432  245678899999


Q ss_pred             CC
Q 024586          122 LS  123 (265)
Q Consensus       122 ~~  123 (265)
                      ..
T Consensus       354 ET  355 (407)
T PRK12726        354 ET  355 (407)
T ss_pred             CC
Confidence            85

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=97.94  E-value=4e-05  Score=64.56  Aligned_cols=113  Identities=20%  Similarity=0.239  Sum_probs=68.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC-eEEEEEeCCCCCCCCCCcHHHHHHHHHHHh------c
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL------N   73 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g-~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~------~   73 (265)
                      +|+||+||||+--.++..-.+.-....+.|.+....+..+-| .-+.+||.-|..       .   .|+.++.      -
T Consensus        10 MGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe-------~---fmen~~~~q~d~iF   79 (295)
T KOG3886|consen   10 MGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQE-------E---FMENYLSSQEDNIF   79 (295)
T ss_pred             eccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcH-------H---HHHHHHhhcchhhh
Confidence            699999999998888755433333334445555544555545 678999987762       1   1222221      1


Q ss_pred             CCccEEEEEEecCCcCCCHHH---HHHHHHHHHhcCcCcCCcEEEEEeCccCCCCC
Q 024586           74 KTIDVLLYVDRLDVYRVDNLD---KQITRAITDNFGEQIWKRALIVLTHAQLSLPD  126 (265)
Q Consensus        74 ~~~d~iL~V~~~d~~r~~~~d---~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~  126 (265)
                      ...++++||.++....+...-   ...++.+.+.-.   --.+.+.++|.|+...+
T Consensus        80 ~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP---~AkiF~l~hKmDLv~~d  132 (295)
T KOG3886|consen   80 RNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSP---EAKIFCLLHKMDLVQED  132 (295)
T ss_pred             eeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCC---cceEEEEEeechhcccc
Confidence            367999999877764343322   233444444322   25678888999996433

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=97.92  E-value=2.2e-05  Score=68.87  Aligned_cols=73  Identities=14%  Similarity=0.172  Sum_probs=44.4

Q ss_pred             CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh------cCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEE
Q 024586           41 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL------NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRAL  114 (265)
Q Consensus        41 ~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~------~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~i  114 (265)
                      .+..+.+|||||...   .+...+++++.+..      ...+|-+++|++...   ...+........+..     ...-
T Consensus       153 ~~~D~ViIDT~G~~~---~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~---~~~~~~~~~~f~~~~-----~~~g  221 (272)
T TIGR00064       153 RNIDVVLIDTAGRLQ---NKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATT---GQNALEQAKVFNEAV-----GLTG  221 (272)
T ss_pred             CCCCEEEEeCCCCCc---chHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC---CHHHHHHHHHHHhhC-----CCCE
Confidence            456789999999854   24444555554432      224788888965542   333333334444333     4568


Q ss_pred             EEEeCccCCC
Q 024586          115 IVLTHAQLSL  124 (265)
Q Consensus       115 vV~tk~D~~~  124 (265)
                      +|+||.|...
T Consensus       222 ~IlTKlDe~~  231 (272)
T TIGR00064       222 IILTKLDGTA  231 (272)
T ss_pred             EEEEccCCCC
Confidence            8999999853

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.90  E-value=3.6e-05  Score=70.15  Aligned_cols=78  Identities=14%  Similarity=0.053  Sum_probs=40.2

Q ss_pred             CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCc---CCcEEEEE
Q 024586           41 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQI---WKRALIVL  117 (265)
Q Consensus        41 ~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~---~~~~ivV~  117 (265)
                      .+..+.+|||||...   .+....+.+........++-.++|++... . .+.-.++++.+....+...   ....=+|+
T Consensus       214 ~~~DlVLIDTaG~~~---~d~~l~e~La~L~~~~~~~~~lLVLsAts-~-~~~l~evi~~f~~~~~~p~~~~~~~~~~I~  288 (374)
T PRK14722        214 RNKHMVLIDTIGMSQ---RDRTVSDQIAMLHGADTPVQRLLLLNATS-H-GDTLNEVVQAYRSAAGQPKAALPDLAGCIL  288 (374)
T ss_pred             cCCCEEEEcCCCCCc---ccHHHHHHHHHHhccCCCCeEEEEecCcc-C-hHHHHHHHHHHHHhhcccccccCCCCEEEE
Confidence            456789999999843   33344444443322223444566643332 1 1222344555555433110   11346788


Q ss_pred             eCccCC
Q 024586          118 THAQLS  123 (265)
Q Consensus       118 tk~D~~  123 (265)
                      ||.|..
T Consensus       289 TKlDEt  294 (374)
T PRK14722        289 TKLDEA  294 (374)
T ss_pred             eccccC
Confidence            999985

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=97.89  E-value=5.2e-06  Score=67.03  Aligned_cols=108  Identities=15%  Similarity=0.108  Sum_probs=66.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCC-CCCCccEEEEee--eCCeEEEEEeCCCCCCCCCCcHHHHHHHHH-HHhcCCc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQ-SEGPRPVMVSRS--RAGFTLNIVDTPGLIEGGYVNYHAIQLIKR-FLLNKTI   76 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~-~~t~~~~~~~~~--~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~-~l~~~~~   76 (265)
                      +|..++||||+|.++...-.  +.++. ............  ..+..+.+|||.|..+.        +.|.+ +.  +|+
T Consensus        26 vGng~VGKssmiqryCkgif--TkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEf--------DaItkAyy--rga   93 (246)
T KOG4252|consen   26 VGNGSVGKSSMIQRYCKGIF--TKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEF--------DAITKAYY--RGA   93 (246)
T ss_pred             ECCCccchHHHHHHHhcccc--ccccccccchhhhhHHHHhhHHHHHHHHHHhccchhH--------HHHHHHHh--ccc
Confidence            58999999999999996532  11111 111111111122  22345578999997433        23322 12  477


Q ss_pred             cEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           77 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        77 d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      .+.++|++-.+....+....+.+.+++..+.   .|+++|-||.|+.
T Consensus        94 qa~vLVFSTTDr~SFea~~~w~~kv~~e~~~---IPtV~vqNKIDlv  137 (246)
T KOG4252|consen   94 QASVLVFSTTDRYSFEATLEWYNKVQKETER---IPTVFVQNKIDLV  137 (246)
T ss_pred             cceEEEEecccHHHHHHHHHHHHHHHHHhcc---CCeEEeeccchhh
Confidence            8888886655422335556777788777765   8999999999995

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=97.84  E-value=0.0002  Score=64.11  Aligned_cols=72  Identities=17%  Similarity=0.189  Sum_probs=39.8

Q ss_pred             CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh------cCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEE
Q 024586           41 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL------NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRAL  114 (265)
Q Consensus        41 ~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~------~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~i  114 (265)
                      .+..+.||||||....   +...+++++....      ...+|-.++|++...   ...+..-.....+..     ...-
T Consensus       195 ~~~D~ViIDTaGr~~~---~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~---g~~~~~~a~~f~~~~-----~~~g  263 (318)
T PRK10416        195 RGIDVLIIDTAGRLHN---KTNLMEELKKIKRVIKKADPDAPHEVLLVLDATT---GQNALSQAKAFHEAV-----GLTG  263 (318)
T ss_pred             CCCCEEEEeCCCCCcC---CHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCC---ChHHHHHHHHHHhhC-----CCCE
Confidence            3457899999998543   2333334433321      235677788854442   222222223322222     4668


Q ss_pred             EEEeCccCC
Q 024586          115 IVLTHAQLS  123 (265)
Q Consensus       115 vV~tk~D~~  123 (265)
                      +|+||.|..
T Consensus       264 iIlTKlD~t  272 (318)
T PRK10416        264 IILTKLDGT  272 (318)
T ss_pred             EEEECCCCC
Confidence            999999975

>PRK14974 cell division protein FtsY; Provisional

Probab=97.83  E-value=2.4e-05  Score=70.50  Aligned_cols=72  Identities=15%  Similarity=0.273  Sum_probs=44.1

Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCcc
Q 024586           42 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ  121 (265)
Q Consensus        42 g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D  121 (265)
                      +..+.+|||+|...   .+...+++++.....-.+|.+++|.+...   .......++...+..     ...-+++||.|
T Consensus       222 ~~DvVLIDTaGr~~---~~~~lm~eL~~i~~~~~pd~~iLVl~a~~---g~d~~~~a~~f~~~~-----~~~giIlTKlD  290 (336)
T PRK14974        222 GIDVVLIDTAGRMH---TDANLMDELKKIVRVTKPDLVIFVGDALA---GNDAVEQAREFNEAV-----GIDGVILTKVD  290 (336)
T ss_pred             CCCEEEEECCCccC---CcHHHHHHHHHHHHhhCCceEEEeecccc---chhHHHHHHHHHhcC-----CCCEEEEeeec
Confidence            45689999999853   33455566665544446888889954432   222223333333332     45678999999


Q ss_pred             CCC
Q 024586          122 LSL  124 (265)
Q Consensus       122 ~~~  124 (265)
                      ...
T Consensus       291 ~~~  293 (336)
T PRK14974        291 ADA  293 (336)
T ss_pred             CCC
Confidence            864

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.83  E-value=5e-05  Score=60.27  Aligned_cols=111  Identities=20%  Similarity=0.161  Sum_probs=64.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCC---CCCCccEEEEeee-------CC--eEEEEEeCCCCCCCCCCcHHHHHHHH
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQ---SEGPRPVMVSRSR-------AG--FTLNIVDTPGLIEGGYVNYHAIQLIK   68 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~---~~t~~~~~~~~~~-------~g--~~v~iiDTPG~~~~~~~~~~~~~~i~   68 (265)
                      +|.+||||+|++-.....+.  .+.+-   +...+........       .+  ..+.+|||.|...       ..+...
T Consensus        15 LGDSGVGKTs~Ly~YTD~~F--~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQER-------FRSLTT   85 (219)
T KOG0081|consen   15 LGDSGVGKTSFLYQYTDGKF--NTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQER-------FRSLTT   85 (219)
T ss_pred             hccCCCCceEEEEEecCCcc--cceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHH-------HHHHHH
Confidence            59999999999877665542  11111   0111111111111       11  2568999999732       222222


Q ss_pred             HHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcC-cCcCCcEEEEEeCccCCC
Q 024586           69 RFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFG-EQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        69 ~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g-~~~~~~~ivV~tk~D~~~  124 (265)
                      .++  +.+=.+|+++++......-+.+.|+..++...- ++  .-+++..||+|+.+
T Consensus        86 AFf--RDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~--PDivlcGNK~DL~~  138 (219)
T KOG0081|consen   86 AFF--RDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCEN--PDIVLCGNKADLED  138 (219)
T ss_pred             HHH--HhhccceEEEeccchHHHHHHHHHHHHHHHhhccCC--CCEEEEcCccchhh
Confidence            222  244567888778765544556788888775432 33  56899999999943

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.83  E-value=0.00018  Score=56.05  Aligned_cols=114  Identities=16%  Similarity=0.226  Sum_probs=67.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|-+++||||++-.|.-...  +...  .|.........+....+++||.-|..       .+....+++.  ++..+++
T Consensus        23 lGLd~aGKTtiLyKLkl~~~--~~~i--pTvGFnvetVtykN~kfNvwdvGGqd-------~iRplWrhYy--~gtqglI   89 (180)
T KOG0071|consen   23 LGLDAAGKTTILYKLKLGQS--VTTI--PTVGFNVETVTYKNVKFNVWDVGGQD-------KIRPLWRHYY--TGTQGLI   89 (180)
T ss_pred             EecccCCceehhhHHhcCCC--cccc--cccceeEEEEEeeeeEEeeeeccCch-------hhhHHHHhhc--cCCceEE
Confidence            58899999999988875542  1111  23333445677888899999998863       2222333333  4778888


Q ss_pred             EEEecCCcCCCHHHHHHHHHHHHhcCc-Cc-CCcEEEEEeCccCCCCCCCCHHH
Q 024586           81 YVDRLDVYRVDNLDKQITRAITDNFGE-QI-WKRALIVLTHAQLSLPDRLDYEV  132 (265)
Q Consensus        81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~-~~-~~~~ivV~tk~D~~~~~~~~~~~  132 (265)
                      ||++..+ + +.. .+.-+++.++.+. ++ --+++|..||-|+  ++..++.+
T Consensus        90 FV~Dsa~-~-dr~-eeAr~ELh~ii~~~em~~~~~LvlANkQDl--p~A~~pqe  138 (180)
T KOG0071|consen   90 FVVDSAD-R-DRI-EEARNELHRIINDREMRDAIILILANKQDL--PDAMKPQE  138 (180)
T ss_pred             EEEeccc-h-hhH-HHHHHHHHHHhCCHhhhcceEEEEecCccc--ccccCHHH
Confidence            8844322 1 222 2333444454443 22 2456778899998  45555543

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.81  E-value=0.00018  Score=68.03  Aligned_cols=17  Identities=29%  Similarity=0.636  Sum_probs=15.2

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|++|+||||++..|..
T Consensus       356 VGPtGvGKTTtaakLAa  372 (559)
T PRK12727        356 VGPTGAGKTTTIAKLAQ  372 (559)
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999988875

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=97.80  E-value=0.00021  Score=62.41  Aligned_cols=166  Identities=15%  Similarity=0.191  Sum_probs=91.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCc---------------ccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHH
Q 024586            1 MGKGGVGKSSTVNSIIGEKA---------------VTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQ   65 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~---------------~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~   65 (265)
                      +|.-.-|||||.-+|.+.-.               ++.....+.|..+....++-..+.+..+|.||..|       +.+
T Consensus        18 iGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaD-------YvK   90 (394)
T COG0050          18 IGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD-------YVK   90 (394)
T ss_pred             eccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHH-------HHH
Confidence            57778899999999885310               11111123444555556677889999999999843       332


Q ss_pred             HHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHHHHHhhchHHHHHHH
Q 024586           66 LIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFV  145 (265)
Q Consensus        66 ~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i  145 (265)
                      .+-.  -....|..++|+..++....+.-..+|  |.+..|-   +++++.+||+|+.  ++...-+.+   .-.+++++
T Consensus        91 NMIt--gAaqmDgAILVVsA~dGpmPqTrEHiL--larqvGv---p~ivvflnK~Dmv--dd~ellelV---emEvreLL  158 (394)
T COG0050          91 NMIT--GAAQMDGAILVVAATDGPMPQTREHIL--LARQVGV---PYIVVFLNKVDMV--DDEELLELV---EMEVRELL  158 (394)
T ss_pred             HHhh--hHHhcCccEEEEEcCCCCCCcchhhhh--hhhhcCC---cEEEEEEeccccc--CcHHHHHHH---HHHHHHHH
Confidence            2211  112557777776666544333322222  3344443   6889999999995  232233333   35566766


Q ss_pred             hccccccccccccCCchhHhhhcCCcCCCCccccccCCCCCCC---hHHHHHHHHHHhh
Q 024586          146 SPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAW---IPNLVKTITEVVL  201 (265)
Q Consensus       146 ~~~~~~~~~~~~~~~ip~~~~~n~~~~~~~~~~~~~lp~~~~W---~~~L~~~i~~~~~  201 (265)
                      ...+.      .-...|+..-+.-          +.|.....|   +.+|++.+.+..+
T Consensus       159 s~y~f------~gd~~Pii~gSal----------~ale~~~~~~~~i~eLm~avd~yip  201 (394)
T COG0050         159 SEYGF------PGDDTPIIRGSAL----------KALEGDAKWEAKIEELMDAVDSYIP  201 (394)
T ss_pred             HHcCC------CCCCcceeechhh----------hhhcCCcchHHHHHHHHHHHHhcCC
Confidence            55431      1123566433321          344444557   4555555555443

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=97.79  E-value=0.00012  Score=57.12  Aligned_cols=108  Identities=16%  Similarity=0.166  Sum_probs=64.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC-eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVL   79 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g-~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~i   79 (265)
                      +|-.++||+|++..|-++++....+    |........+.+| +.++|||.-|...-..-...+.         ...|.+
T Consensus        23 lGldnAGKTT~LKqL~sED~~hltp----T~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYy---------envd~l   89 (185)
T KOG0074|consen   23 LGLDNAGKTTFLKQLKSEDPRHLTP----TNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYY---------ENVDGL   89 (185)
T ss_pred             EecCCCcchhHHHHHccCChhhccc----cCCcceEEEeecCcEEEEEEecCCccccchhhhhhh---------hccceE
Confidence            4778999999999999998644332    2223344556666 8999999988743322222222         277999


Q ss_pred             EEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           80 LYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        80 L~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +||++..+.. +.+...+..+.+....  -...|+.+-.||-|+.
T Consensus        90 IyVIDS~D~krfeE~~~el~ELleeeK--l~~vpvlIfankQdll  132 (185)
T KOG0074|consen   90 IYVIDSTDEKRFEEISEELVELLEEEK--LAEVPVLIFANKQDLL  132 (185)
T ss_pred             EEEEeCCchHhHHHHHHHHHHHhhhhh--hhccceeehhhhhHHH
Confidence            9996543322 3332333333333221  1236777777877773

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.78  E-value=0.0001  Score=68.25  Aligned_cols=73  Identities=11%  Similarity=0.068  Sum_probs=39.6

Q ss_pred             CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCc
Q 024586           41 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA  120 (265)
Q Consensus        41 ~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~  120 (265)
                      .+..+.+|||+|...   .+....+.++.+......+-.++|+  +++. ..   +.+..+...|..  ....=+++||.
T Consensus       268 ~~~d~VLIDTaGrsq---rd~~~~~~l~~l~~~~~~~~~~LVl--~at~-~~---~~~~~~~~~f~~--~~~~~~I~TKl  336 (420)
T PRK14721        268 RGKHMVLIDTVGMSQ---RDQMLAEQIAMLSQCGTQVKHLLLL--NATS-SG---DTLDEVISAYQG--HGIHGCIITKV  336 (420)
T ss_pred             cCCCEEEecCCCCCc---chHHHHHHHHHHhccCCCceEEEEE--cCCC-CH---HHHHHHHHHhcC--CCCCEEEEEee
Confidence            455689999999843   3344555555543223344555663  4321 12   223333344432  14556889999


Q ss_pred             cCCC
Q 024586          121 QLSL  124 (265)
Q Consensus       121 D~~~  124 (265)
                      |...
T Consensus       337 DEt~  340 (420)
T PRK14721        337 DEAA  340 (420)
T ss_pred             eCCC
Confidence            9853

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.74  E-value=7.1e-05  Score=68.20  Aligned_cols=70  Identities=17%  Similarity=0.236  Sum_probs=42.3

Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcC-CccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCc
Q 024586           42 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK-TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA  120 (265)
Q Consensus        42 g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~-~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~  120 (265)
                      ...+.+|||.|.   +..+....++++.++... ..++.|.+ +.+.   .   .+-++.+-+.|+.  ...-=+++||.
T Consensus       281 ~~d~ILVDTaGr---s~~D~~~i~el~~~~~~~~~i~~~Lvl-sat~---K---~~dlkei~~~f~~--~~i~~~I~TKl  348 (407)
T COG1419         281 DCDVILVDTAGR---SQYDKEKIEELKELIDVSHSIEVYLVL-SATT---K---YEDLKEIIKQFSL--FPIDGLIFTKL  348 (407)
T ss_pred             cCCEEEEeCCCC---CccCHHHHHHHHHHHhccccceEEEEE-ecCc---c---hHHHHHHHHHhcc--CCcceeEEEcc
Confidence            456899999998   456677888888877443 44444443 3332   1   2233444444432  14445778999


Q ss_pred             cCC
Q 024586          121 QLS  123 (265)
Q Consensus       121 D~~  123 (265)
                      |..
T Consensus       349 DET  351 (407)
T COG1419         349 DET  351 (407)
T ss_pred             ccc
Confidence            975

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=97.73  E-value=0.0002  Score=66.20  Aligned_cols=104  Identities=18%  Similarity=0.231  Sum_probs=56.0

Q ss_pred             CCCHHHHHHHHhCCCcccc--------------cCCCCCCCccEEEEeee---CC--eEEEEEeCCCCCCCCCCcHHHHH
Q 024586            5 GVGKSSTVNSIIGEKAVTV--------------STFQSEGPRPVMVSRSR---AG--FTLNIVDTPGLIEGGYVNYHAIQ   65 (265)
Q Consensus         5 g~GKSSliN~llg~~~~~~--------------~~~~~~t~~~~~~~~~~---~g--~~v~iiDTPG~~~~~~~~~~~~~   65 (265)
                      .-|||||...|+.......              ..-.+.|.........+   +|  ..+++|||||.-|....-   ..
T Consensus        19 DHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFsYEV---SR   95 (603)
T COG0481          19 DHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYEV---SR   95 (603)
T ss_pred             cCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceEEEe---hh
Confidence            4699999999996532110              01123343333333322   22  457999999998765422   23


Q ss_pred             HHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           66 LIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        66 ~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      .+..      +...|+|+  |+..  --+.+.+.-.--.+..+  --+|.|+||.|+.
T Consensus        96 SLAA------CEGalLvV--DAsQ--GveAQTlAN~YlAle~~--LeIiPViNKIDLP  141 (603)
T COG0481          96 SLAA------CEGALLVV--DASQ--GVEAQTLANVYLALENN--LEIIPVLNKIDLP  141 (603)
T ss_pred             hHhh------CCCcEEEE--ECcc--chHHHHHHHHHHHHHcC--cEEEEeeecccCC
Confidence            3342      34555553  4322  22333333333333222  5689999999994

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.71  E-value=0.00011  Score=72.50  Aligned_cols=74  Identities=9%  Similarity=0.020  Sum_probs=39.9

Q ss_pred             CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCc-CCcEEEEEeC
Q 024586           41 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQI-WKRALIVLTH  119 (265)
Q Consensus        41 ~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~-~~~~ivV~tk  119 (265)
                      .+..+.||||||...   .+....+++........++-+++|+  ++.. .   .+.++.+.+.|.... ....=+|+||
T Consensus       262 ~~~D~VLIDTAGRs~---~d~~l~eel~~l~~~~~p~e~~LVL--sAt~-~---~~~l~~i~~~f~~~~~~~i~glIlTK  332 (767)
T PRK14723        262 GDKHLVLIDTVGMSQ---RDRNVSEQIAMLCGVGRPVRRLLLL--NAAS-H---GDTLNEVVHAYRHGAGEDVDGCIITK  332 (767)
T ss_pred             cCCCEEEEeCCCCCc---cCHHHHHHHHHHhccCCCCeEEEEE--CCCC-c---HHHHHHHHHHHhhcccCCCCEEEEec
Confidence            345689999999743   3344555555443334566677774  4321 1   222333333332110 0244678999


Q ss_pred             ccCC
Q 024586          120 AQLS  123 (265)
Q Consensus       120 ~D~~  123 (265)
                      .|..
T Consensus       333 LDEt  336 (767)
T PRK14723        333 LDEA  336 (767)
T ss_pred             cCCC
Confidence            9985

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=97.69  E-value=0.00025  Score=68.55  Aligned_cols=106  Identities=12%  Similarity=0.090  Sum_probs=65.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeee------------------CCeEEEEEeCCCCCCCCCCcHH
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR------------------AGFTLNIVDTPGLIEGGYVNYH   62 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~------------------~g~~v~iiDTPG~~~~~~~~~~   62 (265)
                      +|.-.+|||-|+..|-+.++ ..+...+.|...-...+..                  .-.-+.+|||||..        
T Consensus       481 lGHVDTGKTKlld~ir~tNV-qegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghE--------  551 (1064)
T KOG1144|consen  481 LGHVDTGKTKLLDKIRGTNV-QEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHE--------  551 (1064)
T ss_pred             eecccccchHHHHHhhcccc-ccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCch--------
Confidence            57888999999999999876 4444334443322111111                  11136899999963        


Q ss_pred             HHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccC
Q 024586           63 AIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL  122 (265)
Q Consensus        63 ~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~  122 (265)
                      .+..+++.- +.-+|+.++|+++-. .+.....+-+..|....     -|+||.+||.|.
T Consensus       552 sFtnlRsrg-sslC~~aIlvvdImh-GlepqtiESi~lLR~rk-----tpFivALNKiDR  604 (1064)
T KOG1144|consen  552 SFTNLRSRG-SSLCDLAILVVDIMH-GLEPQTIESINLLRMRK-----TPFIVALNKIDR  604 (1064)
T ss_pred             hhhhhhhcc-ccccceEEEEeehhc-cCCcchhHHHHHHHhcC-----CCeEEeehhhhh
Confidence            233333321 124688888866542 36666666666665543     799999999985

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=97.66  E-value=0.00049  Score=63.03  Aligned_cols=105  Identities=11%  Similarity=0.138  Sum_probs=65.7

Q ss_pred             CCCCCHHHHHHHHh--CCCcc-------------cccCC------CCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcH
Q 024586            3 KGGVGKSSTVNSII--GEKAV-------------TVSTF------QSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY   61 (265)
Q Consensus         3 ~tg~GKSSliN~ll--g~~~~-------------~~~~~------~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~   61 (265)
                      .+.+|||||--.|+  |....             ..|+.      .+.+......+..+++..+++.||||..|..   +
T Consensus        20 HPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHeDFS---E   96 (528)
T COG4108          20 HPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHEDFS---E   96 (528)
T ss_pred             cCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCccccc---h
Confidence            57899999997776  32110             11110      0111123344677889999999999997643   2


Q ss_pred             HHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccC
Q 024586           62 HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL  122 (265)
Q Consensus        62 ~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~  122 (265)
                      +....+.      .+|..++|++.. ..+.....++++...-..     .|++-.+||.|.
T Consensus        97 DTYRtLt------AvDsAvMVIDaA-KGiE~qT~KLfeVcrlR~-----iPI~TFiNKlDR  145 (528)
T COG4108          97 DTYRTLT------AVDSAVMVIDAA-KGIEPQTLKLFEVCRLRD-----IPIFTFINKLDR  145 (528)
T ss_pred             hHHHHHH------hhheeeEEEecc-cCccHHHHHHHHHHhhcC-----CceEEEeecccc
Confidence            3323332      579999994432 237777777766544332     899999999996

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=97.62  E-value=0.0016  Score=58.20  Aligned_cols=165  Identities=16%  Similarity=0.230  Sum_probs=82.2

Q ss_pred             CCCCCCCHHHHHHHHhCC--CcccccCCCCCCCccEEE----Eee-------e--CCeEEEEEeCCCCCCCCCCcHHHHH
Q 024586            1 MGKGGVGKSSTVNSIIGE--KAVTVSTFQSEGPRPVMV----SRS-------R--AGFTLNIVDTPGLIEGGYVNYHAIQ   65 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~--~~~~~~~~~~~t~~~~~~----~~~-------~--~g~~v~iiDTPG~~~~~~~~~~~~~   65 (265)
                      +|.-.+||+||..+|..-  ..++-...+++++.....    ...       .  ...+++++|.||..          .
T Consensus        13 LGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHa----------s   82 (522)
T KOG0461|consen   13 LGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHA----------S   82 (522)
T ss_pred             EeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcH----------H
Confidence            477889999999998743  222211112222211110    000       1  12356999999972          1


Q ss_pred             HHHHHHh-cCCccEEEEEEecCCcCCC-HHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHHHHHhhchHHHHH
Q 024586           66 LIKRFLL-NKTIDVLLYVDRLDVYRVD-NLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLK  143 (265)
Q Consensus        66 ~i~~~l~-~~~~d~iL~V~~~d~~r~~-~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~~~~l~~  143 (265)
                      .|+..+- +.-+|..++|+++....-+ ..+.-++..+       ..++.++|+||.|..+...  ...-+++-...+++
T Consensus        83 LIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~-------~c~klvvvinkid~lpE~q--r~ski~k~~kk~~K  153 (522)
T KOG0461|consen   83 LIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL-------LCKKLVVVINKIDVLPENQ--RASKIEKSAKKVRK  153 (522)
T ss_pred             HHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhh-------hccceEEEEeccccccchh--hhhHHHHHHHHHHH
Confidence            3333331 1346888888665542222 1222222222       2378899999998864321  11112211233344


Q ss_pred             HHhccccccccccccCCchhHhhhcCCcCCCCccccccCCCCCCChHHHHHHHHHHhhC
Q 024586          144 FVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLN  202 (265)
Q Consensus       144 ~i~~~~~~~~~~~~~~~ip~~~~~n~~~~~~~~~~~~~lp~~~~W~~~L~~~i~~~~~~  202 (265)
                      -++..+ |..      ..|++.++..+.+...++           +++|.+.+.++...
T Consensus       154 tLe~t~-f~g------~~PI~~vsa~~G~~~~~~-----------i~eL~e~l~s~if~  194 (522)
T KOG0461|consen  154 TLESTG-FDG------NSPIVEVSAADGYFKEEM-----------IQELKEALESRIFE  194 (522)
T ss_pred             HHHhcC-cCC------CCceeEEecCCCccchhH-----------HHHHHHHHHHhhcC
Confidence            443322 211      256666665544444333           77777777766643

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=97.61  E-value=1.8e-05  Score=71.30  Aligned_cols=54  Identities=24%  Similarity=0.303  Sum_probs=41.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGG   57 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~   57 (265)
                      ||-+++||||+||+|-..++..+.+.++.|.-=+.   .---+.+.+||+||+.-+.
T Consensus       313 iGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQY---ItLmkrIfLIDcPGvVyps  366 (572)
T KOG2423|consen  313 IGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQY---ITLMKRIFLIDCPGVVYPS  366 (572)
T ss_pred             ecCCCCchHHHHHHHhhcccccccCCCCcchHHHH---HHHHhceeEecCCCccCCC
Confidence            69999999999999999999999988888753221   1112568899999986443

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=97.61  E-value=0.00053  Score=62.85  Aligned_cols=109  Identities=20%  Similarity=0.154  Sum_probs=74.1

Q ss_pred             CCCCCCHHHHHHHHhCCCcc--cccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEE
Q 024586            2 GKGGVGKSSTVNSIIGEKAV--TVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVL   79 (265)
Q Consensus         2 G~tg~GKSSliN~llg~~~~--~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~i   79 (265)
                      |.---|||||+.++.|....  +.....++|.+...+.....+..+.+||.||..+      .....+.   ...++|..
T Consensus         7 GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~------~i~~mia---g~~~~d~a   77 (447)
T COG3276           7 GHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPD------FISNLLA---GLGGIDYA   77 (447)
T ss_pred             eeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHH------HHHHHHh---hhcCCceE
Confidence            45567999999999997532  2222345666666777777777899999999832      1222222   11478999


Q ss_pred             EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      ++|++.|. .+..+..+.+..+ +.+|-   ++.++|+||+|..+
T Consensus        78 lLvV~~de-Gl~~qtgEhL~iL-dllgi---~~giivltk~D~~d  117 (447)
T COG3276          78 LLVVAADE-GLMAQTGEHLLIL-DLLGI---KNGIIVLTKADRVD  117 (447)
T ss_pred             EEEEeCcc-CcchhhHHHHHHH-HhcCC---CceEEEEecccccc
Confidence            99976653 4667766666555 45554   78899999999863

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.61  E-value=0.00022  Score=62.33  Aligned_cols=72  Identities=14%  Similarity=0.065  Sum_probs=43.2

Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCcc
Q 024586           42 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ  121 (265)
Q Consensus        42 g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D  121 (265)
                      +..+.+|||||-.   ..+.+.++++..++....+|-+++|.+..  .-...-.++++.    |..  ....=+++||.|
T Consensus       154 ~~D~ViIDt~Gr~---~~~~~~l~el~~~~~~~~~~~~~LVl~a~--~~~~d~~~~~~~----f~~--~~~~~~I~TKlD  222 (270)
T PRK06731        154 RVDYILIDTAGKN---YRASETVEEMIETMGQVEPDYICLTLSAS--MKSKDMIEIITN----FKD--IHIDGIVFTKFD  222 (270)
T ss_pred             CCCEEEEECCCCC---cCCHHHHHHHHHHHhhhCCCeEEEEEcCc--cCHHHHHHHHHH----hCC--CCCCEEEEEeec
Confidence            5678999999984   33445566666665444677788884332  111222233333    332  255678899999


Q ss_pred             CCC
Q 024586          122 LSL  124 (265)
Q Consensus       122 ~~~  124 (265)
                      ...
T Consensus       223 et~  225 (270)
T PRK06731        223 ETA  225 (270)
T ss_pred             CCC
Confidence            853

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=97.60  E-value=0.00019  Score=61.86  Aligned_cols=59  Identities=24%  Similarity=0.307  Sum_probs=32.0

Q ss_pred             CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHH-HHHhcCcCcCCcEEEEEeC
Q 024586           41 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRA-ITDNFGEQIWKRALIVLTH  119 (265)
Q Consensus        41 ~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~-l~~~~g~~~~~~~ivV~tk  119 (265)
                      .|+.+.||.|.|.+...      . .+.     .-+|.+++|.......    +.+.++. +.++       .=++|+||
T Consensus       120 aG~D~IiiETVGvGQsE------~-~I~-----~~aD~~v~v~~Pg~GD----~iQ~~KaGimEi-------aDi~vVNK  176 (266)
T PF03308_consen  120 AGFDVIIIETVGVGQSE------V-DIA-----DMADTVVLVLVPGLGD----EIQAIKAGIMEI-------ADIFVVNK  176 (266)
T ss_dssp             TT-SEEEEEEESSSTHH------H-HHH-----TTSSEEEEEEESSTCC----CCCTB-TTHHHH--------SEEEEE-
T ss_pred             cCCCEEEEeCCCCCccH------H-HHH-----HhcCeEEEEecCCCcc----HHHHHhhhhhhh-------ccEEEEeC
Confidence            46779999999996421      1 222     3679999996555322    1122211 2222       23899999


Q ss_pred             ccC
Q 024586          120 AQL  122 (265)
Q Consensus       120 ~D~  122 (265)
                      +|.
T Consensus       177 aD~  179 (266)
T PF03308_consen  177 ADR  179 (266)
T ss_dssp             -SH
T ss_pred             CCh
Confidence            995

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>KOG2484 consensus GTPase [General function prediction only]

Probab=97.60  E-value=3.4e-05  Score=69.63  Aligned_cols=54  Identities=28%  Similarity=0.417  Sum_probs=42.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGG   57 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~   57 (265)
                      ||-+++||||+||+|....+..++..++.|+.-...   .-+..+.++|.||+.-..
T Consensus       258 iG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV---~Ldk~i~llDsPgiv~~~  311 (435)
T KOG2484|consen  258 IGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEV---KLDKKIRLLDSPGIVPPS  311 (435)
T ss_pred             ecCCCCChhHHHHHHHHhccccCCCCccchhhhhhe---eccCCceeccCCceeecC
Confidence            689999999999999999988888888777643322   234678999999986543

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.59  E-value=0.0013  Score=53.29  Aligned_cols=72  Identities=19%  Similarity=0.242  Sum_probs=43.6

Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCcc
Q 024586           42 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ  121 (265)
Q Consensus        42 g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D  121 (265)
                      +..+.|+||||...   .+...++.+..+.....++.+++|++...   .....+.+..+.+..+     -.-+|+||.|
T Consensus        82 ~~d~viiDt~g~~~---~~~~~l~~l~~l~~~~~~~~~~lVv~~~~---~~~~~~~~~~~~~~~~-----~~~viltk~D  150 (173)
T cd03115          82 NFDVVIVDTAGRLQ---IDENLMEELKKIKRVVKPDEVLLVVDAMT---GQDAVNQAKAFNEALG-----ITGVILTKLD  150 (173)
T ss_pred             CCCEEEEECcccch---hhHHHHHHHHHHHhhcCCCeEEEEEECCC---ChHHHHHHHHHHhhCC-----CCEEEEECCc
Confidence            55689999999842   23455556655443345788888965432   2233344444444332     3577889999


Q ss_pred             CCC
Q 024586          122 LSL  124 (265)
Q Consensus       122 ~~~  124 (265)
                      ...
T Consensus       151 ~~~  153 (173)
T cd03115         151 GDA  153 (173)
T ss_pred             CCC
Confidence            853

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>cd03112 CobW_like The function of this protein family is unkown

Probab=97.56  E-value=0.00022  Score=57.40  Aligned_cols=18  Identities=39%  Similarity=0.578  Sum_probs=16.2

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|..|+||||+++.+++.
T Consensus         6 ~G~~GsGKTtl~~~l~~~   23 (158)
T cd03112           6 TGFLGAGKTTLLNHILTE   23 (158)
T ss_pred             EECCCCCHHHHHHHHHhc
Confidence            489999999999999875

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.56  E-value=9.6e-05  Score=68.78  Aligned_cols=71  Identities=13%  Similarity=0.078  Sum_probs=37.4

Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHh-cCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCc
Q 024586           42 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLL-NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA  120 (265)
Q Consensus        42 g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~-~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~  120 (265)
                      +..+.||||||..   ..+....+.+..++. ....+-.++|++...   ...   .++.+.+.|..-  ...-+++||.
T Consensus       299 ~~DlVlIDt~G~~---~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~---~~~---~l~~~~~~f~~~--~~~~vI~TKl  367 (424)
T PRK05703        299 DCDVILIDTAGRS---QRDKRLIEELKALIEFSGEPIDVYLVLSATT---KYE---DLKDIYKHFSRL--PLDGLIFTKL  367 (424)
T ss_pred             CCCEEEEeCCCCC---CCCHHHHHHHHHHHhccCCCCeEEEEEECCC---CHH---HHHHHHHHhCCC--CCCEEEEecc
Confidence            4578999999984   334444555555554 222334445533321   222   223333333321  2346889999


Q ss_pred             cCC
Q 024586          121 QLS  123 (265)
Q Consensus       121 D~~  123 (265)
                      |..
T Consensus       368 Det  370 (424)
T PRK05703        368 DET  370 (424)
T ss_pred             ccc
Confidence            974

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.56  E-value=0.00068  Score=62.29  Aligned_cols=72  Identities=17%  Similarity=0.235  Sum_probs=39.7

Q ss_pred             CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc-EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeC
Q 024586           41 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID-VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTH  119 (265)
Q Consensus        41 ~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d-~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk  119 (265)
                      .+..+.+|||||...   .+...+.++...+....++ -.++|++...   ...+  +.+.+.+ |..  ....=+++||
T Consensus       253 ~~~DlVLIDTaGr~~---~~~~~l~el~~~l~~~~~~~e~~LVlsat~---~~~~--~~~~~~~-~~~--~~~~~~I~TK  321 (388)
T PRK12723        253 KDFDLVLVDTIGKSP---KDFMKLAEMKELLNACGRDAEFHLAVSSTT---KTSD--VKEIFHQ-FSP--FSYKTVIFTK  321 (388)
T ss_pred             CCCCEEEEcCCCCCc---cCHHHHHHHHHHHHhcCCCCeEEEEEcCCC---CHHH--HHHHHHH-hcC--CCCCEEEEEe
Confidence            456789999999853   3444466666666433322 4566643332   1222  2233333 321  1456788999


Q ss_pred             ccCC
Q 024586          120 AQLS  123 (265)
Q Consensus       120 ~D~~  123 (265)
                      .|..
T Consensus       322 lDet  325 (388)
T PRK12723        322 LDET  325 (388)
T ss_pred             ccCC
Confidence            9985

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.52  E-value=6.1e-05  Score=69.41  Aligned_cols=72  Identities=19%  Similarity=0.185  Sum_probs=38.9

Q ss_pred             CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc---CCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEE
Q 024586           41 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN---KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVL  117 (265)
Q Consensus        41 ~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~---~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~  117 (265)
                      .+..+.+|||||...   .+...++.+..++..   ..++-.++|++...   ...+   +..+.+.|..  ....=+|+
T Consensus       298 ~~~D~VLIDTaGr~~---rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~---~~~~---~~~~~~~f~~--~~~~glIl  366 (432)
T PRK12724        298 DGSELILIDTAGYSH---RNLEQLERMQSFYSCFGEKDSVENLLVLSSTS---SYHH---TLTVLKAYES--LNYRRILL  366 (432)
T ss_pred             CCCCEEEEeCCCCCc---cCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCC---CHHH---HHHHHHHhcC--CCCCEEEE
Confidence            356789999999843   233455555555422   22345556643332   1212   2233333321  14567889


Q ss_pred             eCccCC
Q 024586          118 THAQLS  123 (265)
Q Consensus       118 tk~D~~  123 (265)
                      ||.|..
T Consensus       367 TKLDEt  372 (432)
T PRK12724        367 TKLDEA  372 (432)
T ss_pred             EcccCC
Confidence            999985

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.47  E-value=0.00013  Score=67.95  Aligned_cols=70  Identities=21%  Similarity=0.181  Sum_probs=41.7

Q ss_pred             eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccC
Q 024586           43 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL  122 (265)
Q Consensus        43 ~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~  122 (265)
                      ..+.||||||..   ..++..+++++.....-.+|.+++|++...   ..   ..++.... |.+.. ...-+|+||.|.
T Consensus       176 ~DvVIIDTAGr~---~~d~~lm~El~~l~~~~~pdevlLVvda~~---gq---~av~~a~~-F~~~l-~i~gvIlTKlD~  244 (437)
T PRK00771        176 ADVIIVDTAGRH---ALEEDLIEEMKEIKEAVKPDEVLLVIDATI---GQ---QAKNQAKA-FHEAV-GIGGIIITKLDG  244 (437)
T ss_pred             CCEEEEECCCcc---cchHHHHHHHHHHHHHhcccceeEEEeccc---cH---HHHHHHHH-HHhcC-CCCEEEEecccC
Confidence            468999999984   335566666666544346788888855432   12   23333322 33211 345678899986


Q ss_pred             C
Q 024586          123 S  123 (265)
Q Consensus       123 ~  123 (265)
                      .
T Consensus       245 ~  245 (437)
T PRK00771        245 T  245 (437)
T ss_pred             C
Confidence            4

>PRK01889 GTPase RsgA; Reviewed

Probab=97.47  E-value=6.2e-05  Score=68.53  Aligned_cols=54  Identities=30%  Similarity=0.500  Sum_probs=32.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCC-------CCCCccEEEEeeeCCeEEEEEeCCCCCCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQ-------SEGPRPVMVSRSRAGFTLNIVDTPGLIEGG   57 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~-------~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~   57 (265)
                      +|.+|+|||||+|+|+|.....++...       .+|......... ++  ..++||||+.+..
T Consensus       201 vG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~-~~--~~l~DtpG~~~~~  261 (356)
T PRK01889        201 LGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLP-SG--GLLIDTPGMRELQ  261 (356)
T ss_pred             ECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEec-CC--CeecCCCchhhhc
Confidence            699999999999999997643333321       122221111111 12  2588999996543

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=97.40  E-value=0.0011  Score=58.51  Aligned_cols=125  Identities=20%  Similarity=0.234  Sum_probs=73.1

Q ss_pred             eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcC-CccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCcc
Q 024586           43 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK-TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ  121 (265)
Q Consensus        43 ~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~-~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D  121 (265)
                      +.+.++|.||.        +.  .|...|+.. --|..|+|+..+......+.++.+-+|.=+ |-   +++|+|=||.|
T Consensus        86 R~VSfVDaPGH--------e~--LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi-gi---k~iiIvQNKID  151 (415)
T COG5257          86 RRVSFVDAPGH--------ET--LMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII-GI---KNIIIVQNKID  151 (415)
T ss_pred             EEEEEeeCCch--------HH--HHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh-cc---ceEEEEecccc
Confidence            46899999997        22  223333221 237888886555433445555555555432 22   89999999999


Q ss_pred             CCCCCCCCHHHHHhhchHHHHHHHhccccccccccccCCchhHhhhcCCcCCCCccccccCCCCCCChHHHHHHHHHHhh
Q 024586          122 LSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVL  201 (265)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ip~~~~~n~~~~~~~~~~~~~lp~~~~W~~~L~~~i~~~~~  201 (265)
                      +.. ++...++|     +.+++|++-...        .+.|++.++..  ...|             +..|++.|.+..+
T Consensus       152 lV~-~E~AlE~y-----~qIk~FvkGt~A--------e~aPIIPiSA~--~~~N-------------IDal~e~i~~~Ip  202 (415)
T COG5257         152 LVS-RERALENY-----EQIKEFVKGTVA--------ENAPIIPISAQ--HKAN-------------IDALIEAIEKYIP  202 (415)
T ss_pred             eec-HHHHHHHH-----HHHHHHhccccc--------CCCceeeehhh--hccC-------------HHHHHHHHHHhCC
Confidence            963 22233333     456777754321        12344444432  1112             8999999999887


Q ss_pred             CCCcceecc
Q 024586          202 NGSKALLVD  210 (265)
Q Consensus       202 ~~~~~~~~~  210 (265)
                      .-.|.+-..
T Consensus       203 tP~rd~~~~  211 (415)
T COG5257         203 TPERDLDKP  211 (415)
T ss_pred             CCccCCCCC
Confidence            766654444

>PRK10867 signal recognition particle protein; Provisional

Probab=97.39  E-value=0.0013  Score=61.21  Aligned_cols=71  Identities=20%  Similarity=0.276  Sum_probs=40.2

Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCcc
Q 024586           42 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ  121 (265)
Q Consensus        42 g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D  121 (265)
                      +..+.|+||||...   .++...+++......-.++-+++|+  |+. .........+.+.+..     ...-+|+||.|
T Consensus       183 ~~DvVIIDTaGrl~---~d~~lm~eL~~i~~~v~p~evllVl--da~-~gq~av~~a~~F~~~~-----~i~giIlTKlD  251 (433)
T PRK10867        183 GYDVVIVDTAGRLH---IDEELMDELKAIKAAVNPDEILLVV--DAM-TGQDAVNTAKAFNEAL-----GLTGVILTKLD  251 (433)
T ss_pred             CCCEEEEeCCCCcc---cCHHHHHHHHHHHHhhCCCeEEEEE--ecc-cHHHHHHHHHHHHhhC-----CCCEEEEeCcc
Confidence            45689999999743   3444455554443333677778884  431 1223333444444322     34567889998


Q ss_pred             CC
Q 024586          122 LS  123 (265)
Q Consensus       122 ~~  123 (265)
                      ..
T Consensus       252 ~~  253 (433)
T PRK10867        252 GD  253 (433)
T ss_pred             Cc
Confidence            64

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=97.32  E-value=0.0014  Score=61.87  Aligned_cols=101  Identities=20%  Similarity=0.280  Sum_probs=61.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCc-ccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKA-VTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVL   79 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~-~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~i   79 (265)
                      ||++|+||||||.+|...-- ...+...+    +. ....-.-+.+++..+|.-  -.    .+++..+      -+|++
T Consensus        75 vGPpGtGKsTLirSlVrr~tk~ti~~i~G----Pi-TvvsgK~RRiTflEcp~D--l~----~miDvaK------IaDLV  137 (1077)
T COG5192          75 VGPPGTGKSTLIRSLVRRFTKQTIDEIRG----PI-TVVSGKTRRITFLECPSD--LH----QMIDVAK------IADLV  137 (1077)
T ss_pred             ecCCCCChhHHHHHHHHHHHHhhhhccCC----ce-EEeecceeEEEEEeChHH--HH----HHHhHHH------hhhee
Confidence            69999999999999987521 01111111    11 112223367899999831  11    2222222      45999


Q ss_pred             EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      |+.++.. ..|.-+..+++..+....    +.+++-|+||.|+.
T Consensus       138 lLlIdgn-fGfEMETmEFLnil~~HG----mPrvlgV~ThlDlf  176 (1077)
T COG5192         138 LLLIDGN-FGFEMETMEFLNILISHG----MPRVLGVVTHLDLF  176 (1077)
T ss_pred             EEEeccc-cCceehHHHHHHHHhhcC----CCceEEEEeecccc
Confidence            8884322 246666777777666543    36789999999996

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.32  E-value=0.00089  Score=68.78  Aligned_cols=120  Identities=14%  Similarity=0.154  Sum_probs=63.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCc--ccccCCCCCCCc-cEEEEeeeCCeEEEEEeCCCCCCCCC----CcH----HHHHHHHH
Q 024586            1 MGKGGVGKSSTVNSIIGEKA--VTVSTFQSEGPR-PVMVSRSRAGFTLNIVDTPGLIEGGY----VNY----HAIQLIKR   69 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~--~~~~~~~~~t~~-~~~~~~~~~g~~v~iiDTPG~~~~~~----~~~----~~~~~i~~   69 (265)
                      ||.+|+||||++.. .|.+.  .......+.... +..|.. +-+..-.+|||.|-.-...    .+.    ..+..+++
T Consensus       131 iG~pgsGKTtal~~-sgl~Fpl~~~~~~~~~~~~gT~~cdw-wf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lLkk  208 (1188)
T COG3523         131 IGPPGSGKTTALLN-SGLQFPLAEQMGALGLAGPGTRNCDW-WFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLLKK  208 (1188)
T ss_pred             ecCCCCCcchHHhc-ccccCcchhhhccccccCCCCcccCc-ccccceEEEcCCcceecccCcchhhHHHHHHHHHHHHH
Confidence            69999999999854 23321  111111111111 111221 2233557999999654332    121    23333444


Q ss_pred             HHhcCCccEEEEEEecCCc-CCCHHHH-HH-------HHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           70 FLLNKTIDVLLYVDRLDVY-RVDNLDK-QI-------TRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        70 ~l~~~~~d~iL~V~~~d~~-r~~~~d~-~~-------l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      +-..+..|.|++.+++.+- ..+..+. ..       +++|.+.++  +..|++|++||+|+.+
T Consensus       209 ~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~--~~~PVYl~lTk~Dll~  270 (1188)
T COG3523         209 YRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLH--ARLPVYLVLTKADLLP  270 (1188)
T ss_pred             hccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhc--cCCceEEEEecccccc
Confidence            4344678999999776531 1223322 11       334444443  4489999999999863

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.29  E-value=0.004  Score=48.81  Aligned_cols=96  Identities=16%  Similarity=0.251  Sum_probs=53.7

Q ss_pred             CCCCCCHHHHHHHHhCC------CcccccC-CCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcC
Q 024586            2 GKGGVGKSSTVNSIIGE------KAVTVST-FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK   74 (265)
Q Consensus         2 G~tg~GKSSliN~llg~------~~~~~~~-~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~   74 (265)
                      |++|+|||++.-.+...      .+..+.. .+....          ...+.|+|||+..+     +.....+.      
T Consensus         7 ~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~----------~yd~VIiD~p~~~~-----~~~~~~l~------   65 (139)
T cd02038           7 GKGGVGKTNISANLALALAKLGKRVLLLDADLGLANL----------DYDYIIIDTGAGIS-----DNVLDFFL------   65 (139)
T ss_pred             CCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCC----------CCCEEEEECCCCCC-----HHHHHHHH------
Confidence            68999999987665532      1111111 111111          15688999998532     22333333      


Q ss_pred             CccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccC
Q 024586           75 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL  122 (265)
Q Consensus        75 ~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~  122 (265)
                      .+|.+++|.+.+...+. .-..+++.+.+..+   ..++.+|+|+.+.
T Consensus        66 ~aD~vviv~~~~~~s~~-~~~~~l~~l~~~~~---~~~~~lVvN~~~~  109 (139)
T cd02038          66 AADEVIVVTTPEPTSIT-DAYALIKKLAKQLR---VLNFRVVVNRAES  109 (139)
T ss_pred             hCCeEEEEcCCChhHHH-HHHHHHHHHHHhcC---CCCEEEEEeCCCC
Confidence            66999999555432111 12345556654332   2578899999874

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.20  E-value=0.00046  Score=65.00  Aligned_cols=18  Identities=39%  Similarity=0.689  Sum_probs=16.1

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      ||.+|+||||++..|.+.
T Consensus       262 vGpnGvGKTTTiaKLA~~  279 (484)
T PRK06995        262 MGPTGVGKTTTTAKLAAR  279 (484)
T ss_pred             ECCCCccHHHHHHHHHHH
Confidence            699999999999998863

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=97.15  E-value=0.0021  Score=61.76  Aligned_cols=107  Identities=17%  Similarity=0.220  Sum_probs=60.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccC-----CCCCCC-------ccEE----EEe---eeCCe--EEEEEeCCCCCCCCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVST-----FQSEGP-------RPVM----VSR---SRAGF--TLNIVDTPGLIEGGYV   59 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~-----~~~~t~-------~~~~----~~~---~~~g~--~v~iiDTPG~~~~~~~   59 (265)
                      +|.-+.|||+|+..|.++..-..+.     ...++.       .+..    .+.   ...|.  -++++||||.-+.  .
T Consensus       134 ~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHVnF--~  211 (971)
T KOG0468|consen  134 VGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGHVNF--S  211 (971)
T ss_pred             eeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCcccc--h
Confidence            4778999999999999875421110     000100       0000    001   11222  3689999998543  2


Q ss_pred             cHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccC
Q 024586           60 NYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL  122 (265)
Q Consensus        60 ~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~  122 (265)
                      + +....++      -+|++++|+++-. .+.-....+++..-+.-     .++++|+||.|.
T Consensus       212 D-E~ta~l~------~sDgvVlvvDv~E-GVmlntEr~ikhaiq~~-----~~i~vviNKiDR  261 (971)
T KOG0468|consen  212 D-ETTASLR------LSDGVVLVVDVAE-GVMLNTERIIKHAIQNR-----LPIVVVINKVDR  261 (971)
T ss_pred             H-HHHHHhh------hcceEEEEEEccc-CceeeHHHHHHHHHhcc-----CcEEEEEehhHH
Confidence            2 2222333      5699988865543 34434444554433332     899999999986

>TIGR00959 ffh signal recognition particle protein

Probab=97.15  E-value=0.0034  Score=58.50  Aligned_cols=71  Identities=18%  Similarity=0.210  Sum_probs=41.5

Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCcc
Q 024586           42 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ  121 (265)
Q Consensus        42 g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D  121 (265)
                      +..+.|+||||...   .++....++..+...-.+|-+++|++..   .........+.+.+..     ...=+|+||.|
T Consensus       182 ~~DvVIIDTaGr~~---~d~~l~~eL~~i~~~~~p~e~lLVvda~---tgq~~~~~a~~f~~~v-----~i~giIlTKlD  250 (428)
T TIGR00959       182 GFDVVIVDTAGRLQ---IDEELMEELAAIKEILNPDEILLVVDAM---TGQDAVNTAKTFNERL-----GLTGVVLTKLD  250 (428)
T ss_pred             CCCEEEEeCCCccc---cCHHHHHHHHHHHHhhCCceEEEEEecc---chHHHHHHHHHHHhhC-----CCCEEEEeCcc
Confidence            45689999999743   3445555555544334678888884432   1233333444444332     34567799998


Q ss_pred             CC
Q 024586          122 LS  123 (265)
Q Consensus       122 ~~  123 (265)
                      ..
T Consensus       251 ~~  252 (428)
T TIGR00959       251 GD  252 (428)
T ss_pred             Cc
Confidence            64

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.12  E-value=0.0057  Score=45.65  Aligned_cols=93  Identities=16%  Similarity=0.185  Sum_probs=49.7

Q ss_pred             CCCCCCHHHHHHHHhCC-------CcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcC
Q 024586            2 GKGGVGKSSTVNSIIGE-------KAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK   74 (265)
Q Consensus         2 G~tg~GKSSliN~llg~-------~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~   74 (265)
                      ++.|+||||+.-.|...       ++.-...-+..            +-.+.|+|||+..+.     .....+.      
T Consensus         7 ~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~------------~~D~IIiDtpp~~~~-----~~~~~l~------   63 (106)
T cd03111           7 AKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQF------------GDDYVVVDLGRSLDE-----VSLAALD------   63 (106)
T ss_pred             CCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCC------------CCCEEEEeCCCCcCH-----HHHHHHH------
Confidence            58999999987666542       11111110000            116889999996431     2222333      


Q ss_pred             CccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeC
Q 024586           75 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTH  119 (265)
Q Consensus        75 ~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk  119 (265)
                      .+|.++++...+.... ..-..+++.+.+...+ ...++.+|+|+
T Consensus        64 ~aD~vlvvv~~~~~s~-~~~~~~~~~l~~~~~~-~~~~~~lVvNr  106 (106)
T cd03111          64 QADRVFLVTQQDLPSI-RNAKRLLELLRVLDYS-LPAKIELVLNR  106 (106)
T ss_pred             HcCeEEEEecCChHHH-HHHHHHHHHHHHcCCC-CcCceEEEecC
Confidence            5699999965553221 2223445555544322 12467788875

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=97.08  E-value=0.00031  Score=60.26  Aligned_cols=111  Identities=21%  Similarity=0.293  Sum_probs=72.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCc----HHHHHHHHHHHhcCCc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN----YHAIQLIKRFLLNKTI   76 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~----~~~~~~i~~~l~~~~~   76 (265)
                      +|-+.+||||+++-|.|..- ++..+..+|-........+.|-++.+.|.||+.++....    .+.+..      ++.+
T Consensus        65 vgFPSvGksTl~~~l~g~~s-~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviav------artc  137 (358)
T KOG1487|consen   65 VGFPSVGKSTLLSKLTGTFS-EVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAV------ARTC  137 (358)
T ss_pred             EecCccchhhhhhhhcCCCC-ccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEE------eecc
Confidence            47789999999999999753 455555666666666667889999999999999864332    222222      2466


Q ss_pred             cEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCc-CCcEEEEEeCcc
Q 024586           77 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQI-WKRALIVLTHAQ  121 (265)
Q Consensus        77 d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~-~~~~ivV~tk~D  121 (265)
                      +++++|.++-  . .-..+++++.-.+.||-.. ..|--+.+.|.|
T Consensus       138 nli~~vld~~--k-p~~hk~~ie~eleg~girlnk~pp~i~~kkKd  180 (358)
T KOG1487|consen  138 NLIFIVLDVL--K-PLSHKKIIEKELEGFGIRLNKQPPNIGTKKKD  180 (358)
T ss_pred             cEEEEEeecc--C-cccHHHHHHHhhhcceeeccCCCCCccccccc
Confidence            8999994432  2 2345777877777787322 133344444444

>cd03114 ArgK-like The function of this protein family is unkown

Probab=97.05  E-value=0.0059  Score=48.50  Aligned_cols=17  Identities=35%  Similarity=0.661  Sum_probs=15.2

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|++|+||||++..+..
T Consensus         5 ~G~~GsGKTt~~~~l~~   21 (148)
T cd03114           5 TGVPGAGKSTLIDALIT   21 (148)
T ss_pred             ECCCCCcHHHHHHHHHH
Confidence            59999999999988875

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.03  E-value=0.00071  Score=54.58  Aligned_cols=110  Identities=13%  Similarity=0.096  Sum_probs=62.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCc-----ccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC
Q 024586            1 MGKGGVGKSSTVNSIIGEKA-----VTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT   75 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~-----~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~   75 (265)
                      +|.-++||+|++-++-..-.     ..++.. .+|..-......+++..+.+||.-|...-    +...+.   +.  ..
T Consensus        23 lgldnAGKttfLe~~Kt~~~~~~~~l~~~ki-~~tvgLnig~i~v~~~~l~fwdlgGQe~l----rSlw~~---yY--~~   92 (197)
T KOG0076|consen   23 LGLDNAGKTTFLEALKTDFSKAYGGLNPSKI-TPTVGLNIGTIEVCNAPLSFWDLGGQESL----RSLWKK---YY--WL   92 (197)
T ss_pred             eccccCCchhHHHHHHHHHHhhhcCCCHHHe-ecccceeecceeeccceeEEEEcCChHHH----HHHHHH---HH--HH
Confidence            47889999999977654311     111111 12333445566778889999999886221    122221   11  25


Q ss_pred             ccEEEEEEecCC-cCCCHHHHHHHHHH-HHhcCcCcCCcEEEEEeCccCC
Q 024586           76 IDVLLYVDRLDV-YRVDNLDKQITRAI-TDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        76 ~d~iL~V~~~d~-~r~~~~d~~~l~~l-~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|+++||++..+ .|+... ...++.+ ...--.  ..|+++.+||-|+.
T Consensus        93 ~H~ii~viDa~~~eR~~~~-~t~~~~v~~~E~le--g~p~L~lankqd~q  139 (197)
T KOG0076|consen   93 AHGIIYVIDATDRERFEES-KTAFEKVVENEKLE--GAPVLVLANKQDLQ  139 (197)
T ss_pred             hceeEEeecCCCHHHHHHH-HHHHHHHHHHHHhc--CCchhhhcchhhhh
Confidence            799999965544 334333 2333322 221111  27899999999984

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.01  E-value=0.00036  Score=57.12  Aligned_cols=47  Identities=23%  Similarity=0.404  Sum_probs=31.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDT   50 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDT   50 (265)
                      .|+|||||||++..|+.......| .+.||+.+.  .++.+|..+.+++.
T Consensus        10 sgPSG~GKsTl~k~L~~~~~l~~S-VS~TTR~pR--~gEv~G~dY~Fvs~   56 (191)
T COG0194          10 SGPSGVGKSTLVKALLEDDKLRFS-VSATTRKPR--PGEVDGVDYFFVTE   56 (191)
T ss_pred             ECCCCCCHHHHHHHHHhhcCeEEE-EEeccCCCC--CCCcCCceeEeCCH
Confidence            389999999999999988732222 334555544  56677776655543

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=96.94  E-value=0.0027  Score=41.84  Aligned_cols=44  Identities=16%  Similarity=0.224  Sum_probs=29.9

Q ss_pred             CccEEEEEEecCCcC-CC-HHHHHHHHHHHHhcCcCcCCcEEEEEeCcc
Q 024586           75 TIDVLLYVDRLDVYR-VD-NLDKQITRAITDNFGEQIWKRALIVLTHAQ  121 (265)
Q Consensus        75 ~~d~iL~V~~~d~~r-~~-~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D  121 (265)
                      =.++|||+++++.+. .+ ++...+++.++..|++   +|+++|+||+|
T Consensus        13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~---~P~i~V~nK~D   58 (58)
T PF06858_consen   13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPN---KPVIVVLNKID   58 (58)
T ss_dssp             T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTT---S-EEEEE--TT
T ss_pred             hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCC---CCEEEEEeccC
Confidence            458999998887654 33 4456788999999976   89999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=96.90  E-value=0.0046  Score=54.34  Aligned_cols=59  Identities=29%  Similarity=0.323  Sum_probs=35.1

Q ss_pred             CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHH-HHHhcCcCcCCcEEEEEeC
Q 024586           41 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRA-ITDNFGEQIWKRALIVLTH  119 (265)
Q Consensus        41 ~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~-l~~~~g~~~~~~~ivV~tk  119 (265)
                      .|..+.||.|-|.+.+.   -+    |.     .-+|.+++|.-..   .- .+.+.++. +.++ +      =++|+||
T Consensus       142 aG~DvIIVETVGvGQse---v~----I~-----~~aDt~~~v~~pg---~G-D~~Q~iK~GimEi-a------Di~vINK  198 (323)
T COG1703         142 AGYDVIIVETVGVGQSE---VD----IA-----NMADTFLVVMIPG---AG-DDLQGIKAGIMEI-A------DIIVINK  198 (323)
T ss_pred             cCCCEEEEEecCCCcch---hH----Hh-----hhcceEEEEecCC---CC-cHHHHHHhhhhhh-h------heeeEec
Confidence            46668999999996542   11    11     1458999884322   22 23444443 2332 2      3899999


Q ss_pred             ccC
Q 024586          120 AQL  122 (265)
Q Consensus       120 ~D~  122 (265)
                      +|.
T Consensus       199 aD~  201 (323)
T COG1703         199 ADR  201 (323)
T ss_pred             cCh
Confidence            995

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=96.87  E-value=0.0037  Score=53.63  Aligned_cols=91  Identities=21%  Similarity=0.333  Sum_probs=53.5

Q ss_pred             CCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEE
Q 024586            2 GKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLY   81 (265)
Q Consensus         2 G~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~   81 (265)
                      |..|+||||++.+++.+-.       ..+              +.+|..+.-.   .   ..+..+-..+.......|||
T Consensus        59 G~rGtGKSSlVkall~~y~-------~~G--------------LRlIev~k~~---L---~~l~~l~~~l~~~~~kFIlf  111 (249)
T PF05673_consen   59 GARGTGKSSLVKALLNEYA-------DQG--------------LRLIEVSKED---L---GDLPELLDLLRDRPYKFILF  111 (249)
T ss_pred             cCCCCCHHHHHHHHHHHHh-------hcC--------------ceEEEECHHH---h---ccHHHHHHHHhcCCCCEEEE
Confidence            8999999999999997531       011              3344433210   0   11223333344456788899


Q ss_pred             EEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCc
Q 024586           82 VDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA  120 (265)
Q Consensus        82 V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~  120 (265)
                      |++++ ..-.+.+...++.+.+..-...-.++++..|=-
T Consensus       112 ~DDLs-Fe~~d~~yk~LKs~LeGgle~~P~NvliyATSN  149 (249)
T PF05673_consen  112 CDDLS-FEEGDTEYKALKSVLEGGLEARPDNVLIYATSN  149 (249)
T ss_pred             ecCCC-CCCCcHHHHHHHHHhcCccccCCCcEEEEEecc
Confidence            97665 233344567777777654444457788887744

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=96.77  E-value=0.026  Score=45.49  Aligned_cols=63  Identities=17%  Similarity=0.254  Sum_probs=36.5

Q ss_pred             EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccC
Q 024586           44 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL  122 (265)
Q Consensus        44 ~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~  122 (265)
                      .+.|||||+-.+.     .....+.      .+|.++++...+...+.. -..+++.+.+. +   .....+|+|+.+.
T Consensus        64 d~viiD~p~~~~~-----~~~~~l~------~ad~viiv~~~~~~s~~~-~~~~~~~~~~~-~---~~~~~iv~N~~~~  126 (179)
T cd02036          64 DYILIDSPAGIER-----GFITAIA------PADEALLVTTPEISSLRD-ADRVKGLLEAL-G---IKVVGVIVNRVRP  126 (179)
T ss_pred             CEEEEECCCCCcH-----HHHHHHH------hCCcEEEEeCCCcchHHH-HHHHHHHHHHc-C---CceEEEEEeCCcc
Confidence            6899999985321     2222333      668899886555322221 22345555442 1   1457789999975

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.74  E-value=0.0045  Score=56.08  Aligned_cols=42  Identities=21%  Similarity=0.229  Sum_probs=31.3

Q ss_pred             CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEec
Q 024586           41 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRL   85 (265)
Q Consensus        41 ~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~   85 (265)
                      +++.+.|+||.|-   ...+...++++..+-..-.||-+|+|.+.
T Consensus       182 e~fdvIIvDTSGR---h~qe~sLfeEM~~v~~ai~Pd~vi~VmDa  223 (483)
T KOG0780|consen  182 ENFDVIIVDTSGR---HKQEASLFEEMKQVSKAIKPDEIIFVMDA  223 (483)
T ss_pred             cCCcEEEEeCCCc---hhhhHHHHHHHHHHHhhcCCCeEEEEEec
Confidence            4667999999997   34456677777776655689999999443

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=96.60  E-value=0.018  Score=54.66  Aligned_cols=107  Identities=19%  Similarity=0.186  Sum_probs=59.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|+-++|||+++++++|+.... +....++.....-.....|  ..+.+-|.+-. +.+...+.   +       ..+|+
T Consensus       431 ~G~k~~GKs~lL~sflgr~~~~-~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~k---e-------~~cDv  498 (625)
T KOG1707|consen  431 VGPKNCGKSALLQSFLGRSMSD-NNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSK---E-------AACDV  498 (625)
T ss_pred             EcCCcCchHHHHHHHhcccccc-ccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCc---c-------ceeee
Confidence            5999999999999999987544 2221121211122222223  24556565433 22211110   0       25699


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +.++++.+..+    ....+..+.+.+-..-..|+++|.+|+|+.
T Consensus       499 ~~~~YDsS~p~----sf~~~a~v~~~~~~~~~~Pc~~va~K~dlD  539 (625)
T KOG1707|consen  499 ACLVYDSSNPR----SFEYLAEVYNKYFDLYKIPCLMVATKADLD  539 (625)
T ss_pred             EEEecccCCch----HHHHHHHHHHHhhhccCCceEEEeeccccc
Confidence            99998776433    222232333322222348999999999984

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=96.60  E-value=0.0065  Score=59.20  Aligned_cols=103  Identities=17%  Similarity=0.229  Sum_probs=57.3

Q ss_pred             CCCHHHHHHHHhCCCcccccCC---------------CCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 024586            5 GVGKSSTVNSIIGEKAVTVSTF---------------QSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKR   69 (265)
Q Consensus         5 g~GKSSliN~llg~~~~~~~~~---------------~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~   69 (265)
                      .-|||||+.+|+..+....+..               .+.|......+....+..+++||+||..|...   +.-...+ 
T Consensus        19 dhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~s---evssas~-   94 (887)
T KOG0467|consen   19 DHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSS---EVSSASR-   94 (887)
T ss_pred             cCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhh---hhhhhhh-
Confidence            4699999999997654222211               12222222334445778899999999977542   1111111 


Q ss_pred             HHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccC
Q 024586           70 FLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL  122 (265)
Q Consensus        70 ~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~  122 (265)
                           =.|..++.+++-. .+..+....++..   .-+.  ..+++|+||.|.
T Consensus        95 -----l~d~alvlvdvve-gv~~qt~~vlrq~---~~~~--~~~~lvinkidr  136 (887)
T KOG0467|consen   95 -----LSDGALVLVDVVE-GVCSQTYAVLRQA---WIEG--LKPILVINKIDR  136 (887)
T ss_pred             -----hcCCcEEEEeecc-ccchhHHHHHHHH---HHcc--CceEEEEehhhh
Confidence                 2355554433322 3555555555422   2222  678999999994

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=96.55  E-value=0.0022  Score=61.04  Aligned_cols=104  Identities=13%  Similarity=0.221  Sum_probs=63.6

Q ss_pred             CCCHHHHHHHHhCCCcc--cccC---------------CCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHH
Q 024586            5 GVGKSSTVNSIIGEKAV--TVST---------------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLI   67 (265)
Q Consensus         5 g~GKSSliN~llg~~~~--~~~~---------------~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i   67 (265)
                      -+||+|+-+.++-....  ....               ..+.|.+.......|...++++|||||..|....-+.++..+
T Consensus        49 dsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT~EVeRALrVl  128 (721)
T KOG0465|consen   49 DAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFTFEVERALRVL  128 (721)
T ss_pred             ecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEEEEehhhhhhc
Confidence            47999999988854321  1110               112333344456677888999999999988765444444333


Q ss_pred             HHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           68 KRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        68 ~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      .        -++++++.+.  ....+.....+...+..     .|.+.-+||.|..
T Consensus       129 D--------GaVlvl~aV~--GVqsQt~tV~rQ~~ry~-----vP~i~FiNKmDRm  169 (721)
T KOG0465|consen  129 D--------GAVLVLDAVA--GVESQTETVWRQMKRYN-----VPRICFINKMDRM  169 (721)
T ss_pred             c--------CeEEEEEccc--ceehhhHHHHHHHHhcC-----CCeEEEEehhhhc
Confidence            2        1233333333  45566666667776654     7888888999973

>PRK14737 gmk guanylate kinase; Provisional

Probab=96.51  E-value=0.0025  Score=52.72  Aligned_cols=47  Identities=17%  Similarity=0.240  Sum_probs=28.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEe
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVD   49 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiD   49 (265)
                      +|++|+||||+++.|+..........+.+|+.+.  ..+.+|..+.+++
T Consensus        10 ~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r--~gE~~G~dY~fvs   56 (186)
T PRK14737         10 SSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPR--PGDEEGKTYFFLT   56 (186)
T ss_pred             ECCCCCCHHHHHHHHHhcCCccccccCccCCCCC--CCCCCCceeEeCC
Confidence            5999999999999999865322222333444332  4445555554443

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=96.40  E-value=0.0022  Score=58.55  Aligned_cols=105  Identities=18%  Similarity=0.173  Sum_probs=64.5

Q ss_pred             CCCCHHHHHHHHhCCCccc-----ccC------------CCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHH
Q 024586            4 GGVGKSSTVNSIIGEKAVT-----VST------------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQL   66 (265)
Q Consensus         4 tg~GKSSliN~llg~~~~~-----~~~------------~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~   66 (265)
                      -.+||+|+...|+-...+.     +..            ..+.|.+.......|.|.++++|||||..|....       
T Consensus        46 idagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~le-------  118 (753)
T KOG0464|consen   46 IDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRLE-------  118 (753)
T ss_pred             ecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEEE-------
Confidence            3589999998887432111     111            1133444555667889999999999999876543       


Q ss_pred             HHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           67 IKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        67 i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +.+|+  +-.|.++.|++.++ .+..+...+.+.-.+.     ..|.++.+||+|..
T Consensus       119 vercl--rvldgavav~dasa-gve~qtltvwrqadk~-----~ip~~~finkmdk~  167 (753)
T KOG0464|consen  119 VERCL--RVLDGAVAVFDASA-GVEAQTLTVWRQADKF-----KIPAHCFINKMDKL  167 (753)
T ss_pred             HHHHH--HHhcCeEEEEeccC-Ccccceeeeehhcccc-----CCchhhhhhhhhhh
Confidence            33443  24578888865554 3444444444333332     37888889999863

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=96.39  E-value=0.06  Score=44.08  Aligned_cols=19  Identities=32%  Similarity=0.678  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        31 ~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          31 VGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             ECCCCChHHHHHHHHHcCC
Confidence            5999999999999999964

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK08472 fliI flagellum-specific ATP synthase; Validated

Probab=96.39  E-value=0.0012  Score=61.28  Aligned_cols=83  Identities=23%  Similarity=0.346  Sum_probs=45.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEE----EeeeCC--eEEEEE-----eCCCCCCCCCCcHHHHHHHHH
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMV----SRSRAG--FTLNIV-----DTPGLIEGGYVNYHAIQLIKR   69 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~----~~~~~g--~~v~ii-----DTPG~~~~~~~~~~~~~~i~~   69 (265)
                      +|.+|+|||||+|.|.+.....+..+.....+....    .....+  ..-.+|     |+||.....   -.....+..
T Consensus       163 ~G~sG~GKStLl~~i~~~~~~~v~vi~~iGergrev~e~~~~~l~~~l~~tvvV~atsddsp~~R~~~---~~~a~~iAE  239 (434)
T PRK08472        163 FAGSGVGKSTLMGMIVKGCLAPIKVVALIGERGREIPEFIEKNLGGDLENTVIVVATSDDSPLMRKYG---AFCAMSVAE  239 (434)
T ss_pred             ECCCCCCHHHHHHHHhhccCCCEEEEEeeCccchhHHHHHHHHhcCcccceEEEEECCCCCHHHhhHH---HHHHHHHHH
Confidence            589999999999999976432222111111110000    011122  134566     888874321   122334566


Q ss_pred             HHhcCCccEEEEEEecC
Q 024586           70 FLLNKTIDVLLYVDRLD   86 (265)
Q Consensus        70 ~l~~~~~d~iL~V~~~d   86 (265)
                      ++...+-||+|++++++
T Consensus       240 yFrd~G~~Vll~~DslT  256 (434)
T PRK08472        240 YFKNQGLDVLFIMDSVT  256 (434)
T ss_pred             HHHHcCCCEEEecccch
Confidence            66667899999996665

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=96.38  E-value=0.031  Score=39.72  Aligned_cols=64  Identities=22%  Similarity=0.303  Sum_probs=36.5

Q ss_pred             CCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEE
Q 024586            2 GKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLY   81 (265)
Q Consensus         2 G~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~   81 (265)
                      |..|+|||++.+.+...-. . ..     ....    ..+  .+.++|+|+..+.....  .....      ..+|.+++
T Consensus         6 g~~G~Gktt~~~~l~~~l~-~-~g-----~~v~----~~~--d~iivD~~~~~~~~~~~--~~~~~------~~~~~vi~   64 (99)
T cd01983           6 GKGGVGKTTLAANLAAALA-K-RG-----KRVL----LID--DYVLIDTPPGLGLLVLL--CLLAL------LAADLVII   64 (99)
T ss_pred             CCCCCCHHHHHHHHHHHHH-H-CC-----CeEE----EEC--CEEEEeCCCCccchhhh--hhhhh------hhCCEEEE
Confidence            7789999999988876421 0 00     0000    011  78899999976432110  01111      26688888


Q ss_pred             EEecC
Q 024586           82 VDRLD   86 (265)
Q Consensus        82 V~~~d   86 (265)
                      +...+
T Consensus        65 v~~~~   69 (99)
T cd01983          65 VTTPE   69 (99)
T ss_pred             ecCCc
Confidence            85544

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.35  E-value=0.0092  Score=48.96  Aligned_cols=108  Identities=15%  Similarity=0.227  Sum_probs=63.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCC---CccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEG---PRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t---~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (265)
                      +|..|.||++++++.+-.....  .+.+++   .++.......+..++.+|||.|..-.+...+.      .++  .+.-
T Consensus        16 vGdgg~gKtt~vkr~ltgeFe~--~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdg------yyI--~~qc   85 (216)
T KOG0096|consen   16 VGDGGTGKTTFVKRHLTGEFEK--TYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDG------YYI--QGQC   85 (216)
T ss_pred             ecCCcccccchhhhhhccccee--cccCcceeEEeeeeeecccCcEEEEeeecccceeecccccc------cEE--ecce
Confidence            5999999999999988765322  122221   12222222233478999999997543221110      111  1223


Q ss_pred             EEEEEEecCCcCCC-HHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           78 VLLYVDRLDVYRVD-NLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        78 ~iL~V~~~d~~r~~-~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ++ +++++.+ +++ .+-..+.+.+.+..++   .|+++..||.|..
T Consensus        86 Ai-imFdVts-r~t~~n~~rwhrd~~rv~~N---iPiv~cGNKvDi~  127 (216)
T KOG0096|consen   86 AI-IMFDVTS-RFTYKNVPRWHRDLVRVREN---IPIVLCGNKVDIK  127 (216)
T ss_pred             eE-EEeeeee-hhhhhcchHHHHHHHHHhcC---CCeeeeccceecc
Confidence            33 4444443 333 4455677778877765   7999999999974

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=96.35  E-value=0.016  Score=44.11  Aligned_cols=97  Identities=18%  Similarity=0.312  Sum_probs=52.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH---hcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL---LNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l---~~~~~d   77 (265)
                      .|++|+|||+++..+...-                      +.++.-+|.+-+.+.. . .+..+.+...+   ......
T Consensus         4 ~G~~G~GKT~l~~~la~~l----------------------~~~~~~i~~~~~~~~~-~-~~~~~~i~~~~~~~~~~~~~   59 (132)
T PF00004_consen    4 HGPPGTGKTTLARALAQYL----------------------GFPFIEIDGSELISSY-A-GDSEQKIRDFFKKAKKSAKP   59 (132)
T ss_dssp             ESSTTSSHHHHHHHHHHHT----------------------TSEEEEEETTHHHTSS-T-THHHHHHHHHHHHHHHTSTS
T ss_pred             ECcCCCCeeHHHHHHHhhc----------------------cccccccccccccccc-c-cccccccccccccccccccc
Confidence            4999999999999998753                      1224456665554221 1 12222233322   111225


Q ss_pred             EEEEEEecCCcC------CCHHHHHHHHHHHHhcCcCcC--CcEEEEEeCcc
Q 024586           78 VLLYVDRLDVYR------VDNLDKQITRAITDNFGEQIW--KRALIVLTHAQ  121 (265)
Q Consensus        78 ~iL~V~~~d~~r------~~~~d~~~l~~l~~~~g~~~~--~~~ivV~tk~D  121 (265)
                      .+|+++.+|.--      ........+..+...+.....  .++++|+|-.+
T Consensus        60 ~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~  111 (132)
T PF00004_consen   60 CVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS  111 (132)
T ss_dssp             EEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred             eeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence            888897776411      122345556666665543222  35777776554

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=96.33  E-value=0.0038  Score=48.87  Aligned_cols=51  Identities=20%  Similarity=0.300  Sum_probs=30.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCccc-ccCCCCCCCccEEEEeeeCCeEEEEEeCCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVT-VSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL   53 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~-~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~   53 (265)
                      +|+||+||||+++.|.+.-... ......+|..+.  ..+.+|..+.++|...+
T Consensus         5 ~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~--~~e~~g~~~~~v~~~~~   56 (137)
T cd00071           5 SGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPR--PGEVDGVDYHFVSKEEF   56 (137)
T ss_pred             ECCCCCCHHHHHHHHHhcCCccceecccccccCCC--CCccCCceeEEeCHHHH
Confidence            5999999999999999863211 112222344332  23456677777764433

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=96.32  E-value=0.033  Score=40.92  Aligned_cols=66  Identities=23%  Similarity=0.326  Sum_probs=35.7

Q ss_pred             CCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEE
Q 024586            2 GKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLY   81 (265)
Q Consensus         2 G~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~   81 (265)
                      .+.|+||||+.-.|...-. ..+      .+......... ..+.|+|||+..+.     .....+.      .+|.+++
T Consensus         7 ~kgG~Gkst~~~~la~~~~-~~~------~~vl~~d~d~~-~d~viiD~p~~~~~-----~~~~~l~------~ad~viv   67 (104)
T cd02042           7 QKGGVGKTTTAVNLAAALA-RRG------KRVLLIDLDPQ-YDYIIIDTPPSLGL-----LTRNALA------AADLVLI   67 (104)
T ss_pred             CCCCcCHHHHHHHHHHHHH-hCC------CcEEEEeCCCC-CCEEEEeCcCCCCH-----HHHHHHH------HCCEEEE
Confidence            3789999998866553211 000      00111111111 56889999996432     2223333      5699998


Q ss_pred             EEecC
Q 024586           82 VDRLD   86 (265)
Q Consensus        82 V~~~d   86 (265)
                      +++.+
T Consensus        68 ~~~~~   72 (104)
T cd02042          68 PVQPS   72 (104)
T ss_pred             eccCC
Confidence            85544

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=96.29  E-value=0.053  Score=42.70  Aligned_cols=19  Identities=42%  Similarity=0.737  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        32 ~G~nGsGKStLl~~l~G~~   50 (144)
T cd03221          32 VGRNGAGKSTLLKLIAGEL   50 (144)
T ss_pred             ECCCCCCHHHHHHHHcCCC
Confidence            5999999999999999975

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=96.24  E-value=0.038  Score=44.77  Aligned_cols=19  Identities=32%  Similarity=0.667  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        32 ~G~nGsGKStLl~~l~G~~   50 (173)
T cd03230          32 LGPNGAGKTTLIKIILGLL   50 (173)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999974

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=96.21  E-value=0.003  Score=42.45  Aligned_cols=16  Identities=38%  Similarity=0.642  Sum_probs=14.2

Q ss_pred             CCCCCCCHHHHHHHHh
Q 024586            1 MGKGGVGKSSTVNSII   16 (265)
Q Consensus         1 vG~tg~GKSSliN~ll   16 (265)
                      .|++|+||||++.+|.
T Consensus        29 ~G~nGsGKSTllDAi~   44 (62)
T PF13555_consen   29 TGPNGSGKSTLLDAIQ   44 (62)
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            4999999999998875

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=96.15  E-value=0.038  Score=49.49  Aligned_cols=128  Identities=14%  Similarity=0.148  Sum_probs=71.4

Q ss_pred             CCCCCCCHHHHHHHHhCC------Cc---------ccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHH
Q 024586            1 MGKGGVGKSSTVNSIIGE------KA---------VTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQ   65 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~------~~---------~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~   65 (265)
                      ||.-.-||+||--+|..-      ..         ++.....+.|.......++-..+.+--+|.||..|       +  
T Consensus        60 IGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHAD-------Y--  130 (449)
T KOG0460|consen   60 IGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHAD-------Y--  130 (449)
T ss_pred             cccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHH-------H--
Confidence            467778999999888742      10         01111123333333344455677888999999842       2  


Q ss_pred             HHHHHHhc-CCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHHHHHhhchHHHHHH
Q 024586           66 LIKRFLLN-KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKF  144 (265)
Q Consensus        66 ~i~~~l~~-~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~~~~l~~~  144 (265)
                       |+..++. ..-|..++|+...+....+. ++.+ .|.+..|-   +++++.+||+|+.  ++...-+.++   -.++++
T Consensus       131 -IKNMItGaaqMDGaILVVaatDG~MPQT-rEHl-LLArQVGV---~~ivvfiNKvD~V--~d~e~leLVE---mE~REl  199 (449)
T KOG0460|consen  131 -IKNMITGAAQMDGAILVVAATDGPMPQT-REHL-LLARQVGV---KHIVVFINKVDLV--DDPEMLELVE---MEIREL  199 (449)
T ss_pred             -HHHhhcCccccCceEEEEEcCCCCCcch-HHHH-HHHHHcCC---ceEEEEEeccccc--CCHHHHHHHH---HHHHHH
Confidence             3333321 24588888866655444333 3322 23344444   7899999999995  2322333332   455666


Q ss_pred             Hhcc
Q 024586          145 VSPS  148 (265)
Q Consensus       145 i~~~  148 (265)
                      +...
T Consensus       200 Lse~  203 (449)
T KOG0460|consen  200 LSEF  203 (449)
T ss_pred             HHHc
Confidence            6543

>TIGR03263 guanyl_kin guanylate kinase

Probab=96.14  E-value=0.0029  Score=51.44  Aligned_cols=50  Identities=22%  Similarity=0.324  Sum_probs=28.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPG   52 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG   52 (265)
                      +|++|+||||+++.|.+...........+|..+.  ..+.++..+.++++..
T Consensus         7 ~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~--~g~~~~~~~~~~~~~~   56 (180)
T TIGR03263         7 SGPSGVGKSTLVKALLEEDPNLKFSISATTRKPR--PGEVDGVDYFFVSKEE   56 (180)
T ss_pred             ECCCCCCHHHHHHHHHccCccccccccceeeCCC--CCCcCCcEEEEecHHH
Confidence            5999999999999999864322211122333222  2234455555555444

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins

Probab=96.14  E-value=0.029  Score=55.94  Aligned_cols=122  Identities=16%  Similarity=0.170  Sum_probs=60.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccC--CCCCCCccEEEEee---eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVST--FQSEGPRPVMVSRS---RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT   75 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~--~~~~t~~~~~~~~~---~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~   75 (265)
                      +|.-++|||||+|.|+|......+.  .+.||.........   .....+.|+|+-|.........+.++.-...+...-
T Consensus         1 ~g~qssgkstlln~lf~t~f~~m~~~~r~qtt~gi~~~~~~~~~~~~~~~~v~d~eg~d~~er~~~~~fe~~~alf~la~   80 (742)
T PF05879_consen    1 FGSQSSGKSTLLNHLFGTQFDVMDESGRQQTTKGIWMAKAKEVESSESNILVLDVEGTDGRERGEDQDFERKSALFALAV   80 (742)
T ss_pred             CCCCCCcHHHHHHHHHCCCccccccccccccchhhHHHhccccccCCCceEEEeCCCCCchhhccccchHHHHHHHHHHh
Confidence            6999999999999999987532222  12233322111111   123478899999875432221112332222222224


Q ss_pred             ccEEEEE---EecCCcC-C-CHHHHHHHHHHHHhcCcC--cCCcEEEEEeCccC
Q 024586           76 IDVLLYV---DRLDVYR-V-DNLDKQITRAITDNFGEQ--IWKRALIVLTHAQL  122 (265)
Q Consensus        76 ~d~iL~V---~~~d~~r-~-~~~d~~~l~~l~~~~g~~--~~~~~ivV~tk~D~  122 (265)
                      +|++|+=   .++..+. . -..-+.+++.-.+.|++.  ...++.++|---|-
T Consensus        81 s~~~iiN~w~~~iG~~~~an~~lLktvfevnl~lf~~~~~~~~k~~llfviRD~  134 (742)
T PF05879_consen   81 SDVLIINMWEHDIGRYQGANMGLLKTVFEVNLQLFGKSKSNDRKTLLLFVIRDH  134 (742)
T ss_pred             hhheeeehhhhhhhhhcccchHHHHHHHHHHHHHHhhcccCCCCceEEEEEeeC
Confidence            5666543   3333221 1 123445556666778643  22344444444444

It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides

>cd00066 G-alpha G protein alpha subunit

Probab=96.09  E-value=0.018  Score=51.59  Aligned_cols=82  Identities=13%  Similarity=0.165  Sum_probs=48.9

Q ss_pred             cEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcC-C------CHHHHHHHHHHHHhc
Q 024586           33 PVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR-V------DNLDKQITRAITDNF  105 (265)
Q Consensus        33 ~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r-~------~~~d~~~l~~l~~~~  105 (265)
                      .......+++..+.++|+.|.....   ..+.    .+.  .++++++||+++++.. .      ...-.+.+..+....
T Consensus       151 i~~~~f~~~~~~~~~~DvgGq~~~R---~kW~----~~f--~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~  221 (317)
T cd00066         151 IVETKFTIKNLKFRMFDVGGQRSER---KKWI----HCF--EDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSIC  221 (317)
T ss_pred             eeEEEEEecceEEEEECCCCCcccc---hhHH----HHh--CCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHH
Confidence            3344566778899999999974322   1222    222  3889999998877531 0      111223333333333


Q ss_pred             CcC--cCCcEEEEEeCccCC
Q 024586          106 GEQ--IWKRALIVLTHAQLS  123 (265)
Q Consensus       106 g~~--~~~~~ivV~tk~D~~  123 (265)
                      ...  ...|+++++||.|+.
T Consensus       222 ~~~~~~~~pill~~NK~D~f  241 (317)
T cd00066         222 NSRWFANTSIILFLNKKDLF  241 (317)
T ss_pred             hCccccCCCEEEEccChHHH
Confidence            322  237999999999974

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma

Probab=96.06  E-value=0.027  Score=49.03  Aligned_cols=56  Identities=21%  Similarity=0.230  Sum_probs=37.7

Q ss_pred             CCCCCCCHHHHHHHHhCCC-cccccCC-CCCCCccEEEEe---eeCCeEEEEEeCCCCCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK-AVTVSTF-QSEGPRPVMVSR---SRAGFTLNIVDTPGLIEG   56 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~-~~~~~~~-~~~t~~~~~~~~---~~~g~~v~iiDTPG~~~~   56 (265)
                      +|+..+|||.|+|.|++.. .+..++. .++|...-....   ...+..+.++||.|+++.
T Consensus        27 ~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDteG~~~~   87 (260)
T PF02263_consen   27 VGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTEGLGDV   87 (260)
T ss_dssp             EEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-TTSTCEEEEEEEEECBTTT
T ss_pred             ecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeecccccccceeEEEecchhcccc
Confidence            4889999999999999864 3444442 345554333322   224578999999999883

GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.01  E-value=0.0037  Score=53.51  Aligned_cols=20  Identities=35%  Similarity=0.597  Sum_probs=18.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCc
Q 024586            1 MGKGGVGKSSTVNSIIGEKA   20 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~   20 (265)
                      ||+||+|||||+|.+.|-..
T Consensus        35 lGpSGcGKSTLLriiAGL~~   54 (248)
T COG1116          35 LGPSGCGKSTLLRLIAGLEK   54 (248)
T ss_pred             ECCCCCCHHHHHHHHhCCCC
Confidence            69999999999999999653

>PRK14738 gmk guanylate kinase; Provisional

Probab=95.93  E-value=0.0063  Score=51.03  Aligned_cols=19  Identities=32%  Similarity=0.538  Sum_probs=16.6

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+||||+++.|....
T Consensus        19 ~GpsG~GK~tl~~~L~~~~   37 (206)
T PRK14738         19 SGPSGVGKDAVLARMRERK   37 (206)
T ss_pred             ECcCCCCHHHHHHHHHhcC
Confidence            5999999999999998643

>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]

Probab=95.92  E-value=0.0039  Score=61.03  Aligned_cols=75  Identities=16%  Similarity=0.116  Sum_probs=40.0

Q ss_pred             EEEEEeCCCCCCCC--CCc----HHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEE
Q 024586           44 TLNIVDTPGLIEGG--YVN----YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVL  117 (265)
Q Consensus        44 ~v~iiDTPG~~~~~--~~~----~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~  117 (265)
                      +++++|+||+....  ..+    +++.+.+..++.  ..+.+++.+....  .+-..-..++...+.-...  .+++-|+
T Consensus       133 ~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~--~~~~iILav~~an--~d~ats~alkiarevDp~g--~RTigvi  206 (657)
T KOG0446|consen  133 NLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIE--KPNRIILAVTPAN--SDIATSPALVVAREVDPGG--SRTLEVI  206 (657)
T ss_pred             hhhhcCCCCCcccccCCCCccHHHHHHHHHHHhcc--ccchhhhhccchh--hhhhcCHHHHHHHhhCCCc--cchhHHh
Confidence            47999999997532  222    234444444443  4556555532221  1112223344444433222  7899999


Q ss_pred             eCccCCC
Q 024586          118 THAQLSL  124 (265)
Q Consensus       118 tk~D~~~  124 (265)
                      ||.|+.+
T Consensus       207 tK~Dlmd  213 (657)
T KOG0446|consen  207 TKFDFMD  213 (657)
T ss_pred             hhHHhhh
Confidence            9999863

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.82  E-value=0.023  Score=48.61  Aligned_cols=112  Identities=13%  Similarity=0.121  Sum_probs=56.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|--.+||||+-...+..-.....-+-..|.........-.-..+.+||.||..+.-...-+.....+      +.-+++
T Consensus        33 MG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~------~~gALi  106 (347)
T KOG3887|consen   33 MGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFR------GVGALI  106 (347)
T ss_pred             EeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHh------ccCeEE
Confidence            47778999999877776431111111111222222121112346789999998664222212222222      678999


Q ss_pred             EEEecCCcCCCHHHHHHHHHH----HHhcCcCcCCcEEEEEeCccCC
Q 024586           81 YVDRLDVYRVDNLDKQITRAI----TDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~~r~~~~d~~~l~~l----~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ||  +|+.   ++-.+.+..|    .+...-+...++=|.+.|+|..
T Consensus       107 fv--IDaQ---ddy~eala~L~~~v~raykvNp~in~EVfiHKvDGL  148 (347)
T KOG3887|consen  107 FV--IDAQ---DDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGL  148 (347)
T ss_pred             EE--Eech---HHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCC
Confidence            99  4542   1222333333    3333223345666778888874

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=95.80  E-value=0.011  Score=50.32  Aligned_cols=16  Identities=38%  Similarity=0.605  Sum_probs=14.3

Q ss_pred             CCCCCCCHHHHHHHHh
Q 024586            1 MGKGGVGKSSTVNSII   16 (265)
Q Consensus         1 vG~tg~GKSSliN~ll   16 (265)
                      ||++|+||||-+|.+.
T Consensus         8 IGPPgSGKsTYc~g~~   23 (290)
T KOG1533|consen    8 IGPPGSGKSTYCNGMS   23 (290)
T ss_pred             EcCCCCCccchhhhHH
Confidence            6999999999998765

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=95.76  E-value=0.0055  Score=52.05  Aligned_cols=20  Identities=35%  Similarity=0.526  Sum_probs=17.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCc
Q 024586            1 MGKGGVGKSSTVNSIIGEKA   20 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~   20 (265)
                      +|+||||||||+|.|-|-+.
T Consensus        37 ~GpSGSGKSTLLniig~ld~   56 (226)
T COG1136          37 VGPSGSGKSTLLNLLGGLDK   56 (226)
T ss_pred             ECCCCCCHHHHHHHHhcccC
Confidence            69999999999999988653

>PHA02518 ParA-like protein; Provisional

Probab=95.73  E-value=0.048  Score=45.24  Aligned_cols=67  Identities=12%  Similarity=0.163  Sum_probs=35.1

Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHh--cCcCcCCcEEEEEeC
Q 024586           42 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDN--FGEQIWKRALIVLTH  119 (265)
Q Consensus        42 g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~--~g~~~~~~~ivV~tk  119 (265)
                      ...+.||||||-.+     ......+.      .+|.+|++...+...+.. -.++++.+...  +... .....++.|+
T Consensus        76 ~~d~viiD~p~~~~-----~~~~~~l~------~aD~viip~~ps~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~iv~n~  142 (211)
T PHA02518         76 GYDYVVVDGAPQDS-----ELARAALR------IADMVLIPVQPSPFDIWA-APDLVELIKARQEVTDG-LPKFAFIISR  142 (211)
T ss_pred             cCCEEEEeCCCCcc-----HHHHHHHH------HCCEEEEEeCCChhhHHH-HHHHHHHHHHHHhhCCC-CceEEEEEec
Confidence            35689999998632     12223333      679999996655322221 12333434332  1111 2345677777


Q ss_pred             cc
Q 024586          120 AQ  121 (265)
Q Consensus       120 ~D  121 (265)
                      .+
T Consensus       143 ~~  144 (211)
T PHA02518        143 AI  144 (211)
T ss_pred             cC
Confidence            65

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=95.73  E-value=0.021  Score=51.29  Aligned_cols=17  Identities=35%  Similarity=0.585  Sum_probs=15.2

Q ss_pred             CCCCCCHHHHHHHHhCC
Q 024586            2 GKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         2 G~tg~GKSSliN~llg~   18 (265)
                      |--|+|||||+|.++..
T Consensus        11 GFLGaGKTTll~~ll~~   27 (318)
T PRK11537         11 GFLGAGKTTLLRHILNE   27 (318)
T ss_pred             ECCCCCHHHHHHHHHhc
Confidence            77899999999999954

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=95.72  E-value=0.024  Score=50.68  Aligned_cols=75  Identities=17%  Similarity=0.215  Sum_probs=40.6

Q ss_pred             CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc---CCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEE
Q 024586           41 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN---KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVL  117 (265)
Q Consensus        41 ~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~---~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~  117 (265)
                      .+..+.++||.|-..+...--+-++.|.+-...   ..+|=+++|  +|+. ...+-..-.+.+.+..     .-.=+++
T Consensus       220 r~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llv--lDAt-tGqnal~QAk~F~eav-----~l~GiIl  291 (340)
T COG0552         220 RGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLV--LDAT-TGQNALSQAKIFNEAV-----GLDGIIL  291 (340)
T ss_pred             cCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEE--EEcc-cChhHHHHHHHHHHhc-----CCceEEE
Confidence            466799999999654322111223334433321   245668888  3431 1233334445555554     3446789


Q ss_pred             eCccCC
Q 024586          118 THAQLS  123 (265)
Q Consensus       118 tk~D~~  123 (265)
                      ||.|-.
T Consensus       292 TKlDgt  297 (340)
T COG0552         292 TKLDGT  297 (340)
T ss_pred             EecccC
Confidence            999964

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=95.70  E-value=0.026  Score=52.04  Aligned_cols=71  Identities=18%  Similarity=0.199  Sum_probs=43.1

Q ss_pred             CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCc
Q 024586           41 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA  120 (265)
Q Consensus        41 ~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~  120 (265)
                      .+..+.|+||.|-.   ..+++..++++..-..-.||=+|+|++..   ..+.-....+.+.+..     .-+=||+||.
T Consensus       181 ~~~DvvIvDTAGRl---~ide~Lm~El~~Ik~~~~P~E~llVvDam---~GQdA~~~A~aF~e~l-----~itGvIlTKl  249 (451)
T COG0541         181 EGYDVVIVDTAGRL---HIDEELMDELKEIKEVINPDETLLVVDAM---IGQDAVNTAKAFNEAL-----GITGVILTKL  249 (451)
T ss_pred             cCCCEEEEeCCCcc---cccHHHHHHHHHHHhhcCCCeEEEEEecc---cchHHHHHHHHHhhhc-----CCceEEEEcc
Confidence            34579999999973   44666777766554445789999994332   2233344555555543     2334566777


Q ss_pred             cC
Q 024586          121 QL  122 (265)
Q Consensus       121 D~  122 (265)
                      |.
T Consensus       250 DG  251 (451)
T COG0541         250 DG  251 (451)
T ss_pred             cC
Confidence            65

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=95.69  E-value=0.0057  Score=50.23  Aligned_cols=19  Identities=42%  Similarity=0.679  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|+||+|||||+|.+.|-.
T Consensus        31 ~GpSGaGKSTLLnLIAGF~   49 (231)
T COG3840          31 LGPSGAGKSTLLNLIAGFE   49 (231)
T ss_pred             ECCCCccHHHHHHHHHhcc
Confidence            6999999999999999954

>PRK00300 gmk guanylate kinase; Provisional

Probab=95.68  E-value=0.008  Score=49.98  Aligned_cols=19  Identities=32%  Similarity=0.613  Sum_probs=17.2

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.+.-
T Consensus        11 ~G~sGsGKstl~~~l~~~~   29 (205)
T PRK00300         11 SGPSGAGKSTLVKALLERD   29 (205)
T ss_pred             ECCCCCCHHHHHHHHHhhC
Confidence            5999999999999999864

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=95.65  E-value=0.0053  Score=47.49  Aligned_cols=19  Identities=32%  Similarity=0.583  Sum_probs=17.6

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||+++|.|..
T Consensus        17 ~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   17 VGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             EESTTSSHHHHHHHHTTSS
T ss_pred             EccCCCccccceeeecccc
Confidence            5999999999999999975

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]

Probab=95.64  E-value=0.03  Score=50.36  Aligned_cols=62  Identities=21%  Similarity=0.314  Sum_probs=40.1

Q ss_pred             EEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           46 NIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        46 ~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      .||||+|+.+ +..-...+..|+.+    ++|+++.+   +.       ..+...+.+.++..-|.+ ++-+-|.+..
T Consensus       215 ~iInT~g~i~-~egy~~llhai~~f----~v~vviVL---g~-------ErLy~~lkk~~~~~~~v~-vv~lpKsgGv  276 (415)
T KOG2749|consen  215 CIINTCGWIE-GEGYAALLHAIKAF----EVDVVIVL---GQ-------ERLYSSLKKDLPPKKNVR-VVKLPKSGGV  276 (415)
T ss_pred             eEEeccceec-cccHHHHHHHHHHc----CccEEEEe---cc-------HHHHHHHHhhccccccce-EEEecCCCCe
Confidence            5899999987 33334455555544    88888877   42       267777888887554444 4455776653

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=95.63  E-value=0.0096  Score=49.85  Aligned_cols=75  Identities=24%  Similarity=0.232  Sum_probs=38.1

Q ss_pred             EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE-EEEEEecCCcCCCHHHHHHH---HHHHHhcCcCcCCcEEEEEeC
Q 024586           44 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV-LLYVDRLDVYRVDNLDKQIT---RAITDNFGEQIWKRALIVLTH  119 (265)
Q Consensus        44 ~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~-iL~V~~~d~~r~~~~d~~~l---~~l~~~~g~~~~~~~ivV~tk  119 (265)
                      .+.|+|.||..+--..- ..+..+-+.+..-.+.+ ++|+  +++.=+.+..+.+-   .++..+..  .-.|.|=|++|
T Consensus        99 dylifDcPGQIELytH~-pVm~~iv~hl~~~~F~~c~Vyl--ldsqf~vD~~KfiSG~lsAlsAMi~--lE~P~INvlsK  173 (273)
T KOG1534|consen   99 DYLIFDCPGQIELYTHL-PVMPQIVEHLKQWNFNVCVVYL--LDSQFLVDSTKFISGCLSALSAMIS--LEVPHINVLSK  173 (273)
T ss_pred             CEEEEeCCCeeEEeecC-hhHHHHHHHHhcccCceeEEEE--eccchhhhHHHHHHHHHHHHHHHHH--hcCcchhhhhH
Confidence            47899999988742221 22333333332223333 3444  45422333333332   23333322  22788999999


Q ss_pred             ccCC
Q 024586          120 AQLS  123 (265)
Q Consensus       120 ~D~~  123 (265)
                      .|+.
T Consensus       174 MDLl  177 (273)
T KOG1534|consen  174 MDLL  177 (273)
T ss_pred             HHHh
Confidence            9995

>smart00275 G_alpha G protein alpha subunit

Probab=95.62  E-value=0.042  Score=49.82  Aligned_cols=83  Identities=8%  Similarity=0.058  Sum_probs=50.3

Q ss_pred             ccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcC-------CCHHHHHHHHHHHHh
Q 024586           32 RPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR-------VDNLDKQITRAITDN  104 (265)
Q Consensus        32 ~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r-------~~~~d~~~l~~l~~~  104 (265)
                      ........+++..+.++|..|.....   ..+    ..++  .++++++||+++++..       ....-.+.+..+...
T Consensus       173 Gi~~~~f~~~~~~~~~~DvgGqr~~R---~kW----~~~f--~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l  243 (342)
T smart00275      173 GIQETAFIVKKLFFRMFDVGGQRSER---KKW----IHCF--DNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESI  243 (342)
T ss_pred             ceEEEEEEECCeEEEEEecCCchhhh---hhH----HHHh--CCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHH
Confidence            34445567788899999999973222   122    2222  3789999998877531       011122333444444


Q ss_pred             cCcC--cCCcEEEEEeCccCC
Q 024586          105 FGEQ--IWKRALIVLTHAQLS  123 (265)
Q Consensus       105 ~g~~--~~~~~ivV~tk~D~~  123 (265)
                      +...  ...|+++++||.|+.
T Consensus       244 ~~~~~~~~~piil~~NK~D~~  264 (342)
T smart00275      244 CNSRWFANTSIILFLNKIDLF  264 (342)
T ss_pred             HcCccccCCcEEEEEecHHhH
Confidence            4322  237999999999984

Subunit of G proteins that contains the guanine nucleotide binding site

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=95.54  E-value=0.019  Score=51.99  Aligned_cols=70  Identities=13%  Similarity=0.017  Sum_probs=45.7

Q ss_pred             EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           44 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        44 ~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      -+++||..|...       +....-.-+..-.+|..++|++.+. .++...++.+..+....     .|+.+++||.|+.
T Consensus       250 lvTfiDLAGh~k-------Y~~TTi~gLtgY~Ph~A~LvVsA~~-Gi~~tTrEHLgl~~AL~-----iPfFvlvtK~Dl~  316 (591)
T KOG1143|consen  250 LVTFIDLAGHAK-------YQKTTIHGLTGYTPHFACLVVSADR-GITWTTREHLGLIAALN-----IPFFVLVTKMDLV  316 (591)
T ss_pred             eEEEeecccchh-------hheeeeeecccCCCceEEEEEEcCC-CCccccHHHHHHHHHhC-----CCeEEEEEeeccc
Confidence            378999988632       2111111233346899888877664 36666666666666554     8999999999996


Q ss_pred             CCC
Q 024586          124 LPD  126 (265)
Q Consensus       124 ~~~  126 (265)
                      .+.
T Consensus       317 ~~~  319 (591)
T KOG1143|consen  317 DRQ  319 (591)
T ss_pred             cch
Confidence            543

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.50  E-value=0.016  Score=45.59  Aligned_cols=107  Identities=12%  Similarity=0.180  Sum_probs=56.3

Q ss_pred             CCCHHHHHHHHhCCCccc---ccCCCCCCCccE-------------------EEEeeeCCeEEEEEeCCCCCCCCCCcHH
Q 024586            5 GVGKSSTVNSIIGEKAVT---VSTFQSEGPRPV-------------------MVSRSRAGFTLNIVDTPGLIEGGYVNYH   62 (265)
Q Consensus         5 g~GKSSliN~llg~~~~~---~~~~~~~t~~~~-------------------~~~~~~~g~~v~iiDTPG~~~~~~~~~~   62 (265)
                      |.||||+..+|.|.+...   .-...+++....                   .....+.+.++.|||.-|..+-.    -
T Consensus         2 ~~g~~s~f~~L~g~e~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v~yKNLk~~vwdLggqtSir----P   77 (182)
T KOG0072|consen    2 GGGFSSLFKALQGPEREMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIR----P   77 (182)
T ss_pred             CchHHHHHHHhcCCccceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCccccccccccceeeEccCccccc----H
Confidence            679999999999973210   000111111111                   12233455667899987764332    1


Q ss_pred             HHHHHHHHHhcCCccEEEEEEecC-CcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccC
Q 024586           63 AIQLIKRFLLNKTIDVLLYVDRLD-VYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL  122 (265)
Q Consensus        63 ~~~~i~~~l~~~~~d~iL~V~~~d-~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~  122 (265)
                      +...   +.  ...|+++||++.. ..|+...-..+.-.+++---..  -.++++.||.|.
T Consensus        78 yWRc---Yy--~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~--a~llv~anKqD~  131 (182)
T KOG0072|consen   78 YWRC---YY--ADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQH--AKLLVFANKQDY  131 (182)
T ss_pred             HHHH---Hh--cccceEEEEEeccchhhhhhhHHHHHHHhccHhhcC--ceEEEEeccccc
Confidence            2221   11  2678999995433 2335544444554444321111  457788899997

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=95.47  E-value=0.065  Score=42.71  Aligned_cols=110  Identities=19%  Similarity=0.121  Sum_probs=61.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+..||+||+-...|....+.. .+..+..+......+.|.  .+.|||.-|..+.       ..++-  +.+.++-+
T Consensus        26 lGD~qiGKTs~mvkYV~~~~de~~-~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~-------~n~lP--iac~dsva   95 (205)
T KOG1673|consen   26 LGDAQIGKTSLMVKYVQNEYDEEY-TQTLGVNFMDKTVSIRGTDISFSIWDLGGQREF-------INMLP--IACKDSVA   95 (205)
T ss_pred             ecccccCceeeehhhhcchhHHHH-HHHhCccceeeEEEecceEEEEEEEecCCcHhh-------hccCc--eeecCcEE
Confidence            588999999999999987642111 111223333344445554  5689999887422       11111  12246778


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      |||+.++... .+-.  .+.+..++..|-+-----|+|.||-|+.
T Consensus        96 IlFmFDLt~r-~TLn--Si~~WY~QAr~~NktAiPilvGTKyD~f  137 (205)
T KOG1673|consen   96 ILFMFDLTRR-STLN--SIKEWYRQARGLNKTAIPILVGTKYDLF  137 (205)
T ss_pred             EEEEEecCch-HHHH--HHHHHHHHHhccCCccceEEeccchHhh
Confidence            9999887752 2211  2333344444422112236789999863

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=95.45  E-value=0.036  Score=43.30  Aligned_cols=45  Identities=13%  Similarity=0.155  Sum_probs=31.6

Q ss_pred             CccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           75 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        75 ~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      .+|++|+|++... .....+..+.+.+.+.. .  .+|+++|+||+|+.
T Consensus        11 ~aD~vl~ViD~~~-p~~~~~~~l~~~l~~~~-~--~k~~iivlNK~DL~   55 (141)
T cd01857          11 RSDIVVQIVDARN-PLLFRPPDLERYVKEVD-P--RKKNILLLNKADLL   55 (141)
T ss_pred             hCCEEEEEEEccC-CcccCCHHHHHHHHhcc-C--CCcEEEEEechhcC
Confidence            7899999966543 23444556666666542 1  28999999999985

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=95.36  E-value=0.11  Score=45.46  Aligned_cols=19  Identities=11%  Similarity=0.177  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|.-
T Consensus       117 ~g~~g~GKttl~~~l~~~~  135 (270)
T TIGR02858       117 ISPPQCGKTTLLRDLARIL  135 (270)
T ss_pred             EcCCCCCHHHHHHHHhCcc
Confidence            5999999999999999964

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=95.34  E-value=0.089  Score=39.98  Aligned_cols=19  Identities=32%  Similarity=0.508  Sum_probs=17.0

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||++++.+.+.-
T Consensus        25 ~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          25 YGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             ECCCCCCHHHHHHHHHHHh
Confidence            4999999999999998864

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]

Probab=95.31  E-value=0.033  Score=50.92  Aligned_cols=18  Identities=22%  Similarity=0.331  Sum_probs=15.0

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|..+||||||.+-|.++
T Consensus        79 vG~vDSGKSTLt~~LaN~   96 (398)
T COG1341          79 VGPVDSGKSTLTTYLANK   96 (398)
T ss_pred             ECCcCcCHHHHHHHHHHH
Confidence            699999999998777654

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=95.31  E-value=0.02  Score=48.88  Aligned_cols=20  Identities=30%  Similarity=0.542  Sum_probs=18.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCc
Q 024586            1 MGKGGVGKSSTVNSIIGEKA   20 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~   20 (265)
                      +|+||+|||||.+.|.|-..
T Consensus        39 vGeSGsGKSTL~r~l~Gl~~   58 (252)
T COG1124          39 VGESGSGKSTLARLLAGLEK   58 (252)
T ss_pred             EcCCCCCHHHHHHHHhcccC
Confidence            69999999999999999764

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=95.26  E-value=0.011  Score=49.53  Aligned_cols=19  Identities=32%  Similarity=0.483  Sum_probs=17.6

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        33 ~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          33 VGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999999974

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=95.20  E-value=0.011  Score=50.30  Aligned_cols=19  Identities=37%  Similarity=0.623  Sum_probs=17.6

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        32 ~G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261          32 IGPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            6999999999999999974

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01858 NGP_1 NGP-1

Probab=95.07  E-value=0.039  Score=43.90  Aligned_cols=45  Identities=18%  Similarity=0.194  Sum_probs=31.6

Q ss_pred             CccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           75 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        75 ~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      .+|++++|++... .+...+..+.+.+... .  ..+|+++|+||+|+.
T Consensus         8 ~aD~il~VvD~~~-p~~~~~~~i~~~l~~~-~--~~~p~ilVlNKiDl~   52 (157)
T cd01858           8 SSDVVIQVLDARD-PMGTRCKHVEEYLKKE-K--PHKHLIFVLNKCDLV   52 (157)
T ss_pred             hCCEEEEEEECCC-CccccCHHHHHHHHhc-c--CCCCEEEEEEchhcC
Confidence            7899999966543 1344566666766653 1  127899999999995

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=95.06  E-value=0.013  Score=52.85  Aligned_cols=19  Identities=37%  Similarity=0.648  Sum_probs=17.6

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|+||+|||||++.|.|-.
T Consensus        35 lGPSGcGKSTlLr~IAGLe   53 (338)
T COG3839          35 LGPSGCGKSTLLRMIAGLE   53 (338)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            6999999999999999965

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=95.04  E-value=0.21  Score=41.31  Aligned_cols=19  Identities=42%  Similarity=0.842  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        41 ~G~nGsGKStLl~~i~Gl~   59 (194)
T cd03213          41 MGPSGAGKSTLLNALAGRR   59 (194)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999975

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=95.03  E-value=0.014  Score=48.07  Aligned_cols=19  Identities=32%  Similarity=0.503  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        24 ~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        24 LGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999964

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=95.03  E-value=0.013  Score=49.15  Aligned_cols=19  Identities=37%  Similarity=0.566  Sum_probs=17.6

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        36 ~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          36 VGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             EcCCCCCHHHHHHHHhCCc
Confidence            6999999999999999974

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=95.02  E-value=0.013  Score=49.17  Aligned_cols=19  Identities=37%  Similarity=0.695  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        35 ~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        35 VGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999964

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=95.01  E-value=0.013  Score=49.32  Aligned_cols=19  Identities=37%  Similarity=0.620  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        36 ~G~nGsGKSTLl~~l~Gl~   54 (220)
T cd03293          36 VGPSGCGKSTLLRIIAGLE   54 (220)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999974

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=95.00  E-value=0.014  Score=49.27  Aligned_cols=19  Identities=26%  Similarity=0.525  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        32 ~G~nGsGKSTLl~~i~G~~   50 (220)
T cd03265          32 LGPNGAGKTTTIKMLTTLL   50 (220)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999964

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily

Probab=94.99  E-value=0.23  Score=39.87  Aligned_cols=67  Identities=12%  Similarity=0.012  Sum_probs=37.7

Q ss_pred             CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCH-HHHHHHHHHHHhcCcCcCCcEEEEEeC
Q 024586           41 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDN-LDKQITRAITDNFGEQIWKRALIVLTH  119 (265)
Q Consensus        41 ~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~-~d~~~l~~l~~~~g~~~~~~~ivV~tk  119 (265)
                      .+..+.|+|||+..+     ........    ...+|.+++|.+.+.  .+. .-..+++.+.+.. .   +..-+|+|+
T Consensus        66 ~~yD~VIiD~pp~~~-----~~~~~~~~----~~~ad~viiV~~p~~--~s~~~~~~~~~~l~~~~-~---~~~gvv~N~  130 (169)
T cd02037          66 GELDYLVIDMPPGTG-----DEHLTLAQ----SLPIDGAVIVTTPQE--VALDDVRKAIDMFKKVN-I---PILGVVENM  130 (169)
T ss_pred             CCCCEEEEeCCCCCc-----HHHHHHHh----ccCCCeEEEEECCch--hhHHHHHHHHHHHHhcC-C---CeEEEEEcC
Confidence            356789999999632     12221110    125699999965543  222 2234555555542 1   344578999


Q ss_pred             ccC
Q 024586          120 AQL  122 (265)
Q Consensus       120 ~D~  122 (265)
                      .+.
T Consensus       131 ~~~  133 (169)
T cd02037         131 SYF  133 (169)
T ss_pred             Ccc
Confidence            875

Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=94.97  E-value=0.014  Score=48.89  Aligned_cols=19  Identities=26%  Similarity=0.546  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        34 ~G~nGsGKSTLl~~i~Gl~   52 (214)
T TIGR02673        34 TGPSGAGKTTLLKLLYGAL   52 (214)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999974

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=94.92  E-value=0.015  Score=48.68  Aligned_cols=19  Identities=21%  Similarity=0.452  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        31 ~G~nGsGKSTLl~~l~Gl~   49 (211)
T cd03264          31 LGPNGAGKTTLMRILATLT   49 (211)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999964

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=94.91  E-value=0.014  Score=49.40  Aligned_cols=19  Identities=26%  Similarity=0.434  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        32 ~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          32 IGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             ECCCCCCHHHHHHHHHhhc
Confidence            5999999999999999974

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=94.90  E-value=0.015  Score=48.48  Aligned_cols=19  Identities=32%  Similarity=0.538  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        32 ~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          32 TGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999999964

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=94.86  E-value=0.016  Score=48.53  Aligned_cols=19  Identities=32%  Similarity=0.623  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        32 ~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03259          32 LGPSGCGKTTLLRLIAGLE   50 (213)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999964

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=94.85  E-value=0.016  Score=48.81  Aligned_cols=19  Identities=32%  Similarity=0.754  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        32 ~G~nGsGKSTLl~~l~Gl~   50 (222)
T cd03224          32 LGRNGAGKTTLLKTIMGLL   50 (222)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            6999999999999999974

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=94.84  E-value=0.015  Score=47.83  Aligned_cols=19  Identities=26%  Similarity=0.473  Sum_probs=17.2

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+||||++++|++.-
T Consensus        31 ~G~tGSGKTTll~aL~~~i   49 (186)
T cd01130          31 SGGTGSGKTTLLNALLAFI   49 (186)
T ss_pred             ECCCCCCHHHHHHHHHhhc
Confidence            5999999999999999864

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=94.81  E-value=0.015  Score=47.53  Aligned_cols=17  Identities=41%  Similarity=0.476  Sum_probs=15.7

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|++|+|||||+|.+++
T Consensus        27 ~G~nG~GKSTLl~~il~   43 (176)
T cd03238          27 TGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             ECCCCCCHHHHHHHHhh
Confidence            59999999999999985

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>KOG4181 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.81  E-value=0.12  Score=46.57  Aligned_cols=19  Identities=26%  Similarity=0.513  Sum_probs=17.1

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|.-|+|||++++.|.+..
T Consensus       194 lG~QgsGKStllslLaans  212 (491)
T KOG4181|consen  194 LGGQGSGKSTLLSLLAANS  212 (491)
T ss_pred             ecCCCccHHHHHHHHhccC
Confidence            6899999999999999874

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=94.80  E-value=0.063  Score=48.48  Aligned_cols=19  Identities=26%  Similarity=0.377  Sum_probs=16.9

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      .|.||+||||++|+|+..-
T Consensus       166 ~G~tgSGKTTll~aL~~~i  184 (332)
T PRK13900        166 SGGTSTGKTTFTNAALREI  184 (332)
T ss_pred             ECCCCCCHHHHHHHHHhhC
Confidence            4999999999999999753

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=94.80  E-value=0.017  Score=48.03  Aligned_cols=19  Identities=37%  Similarity=0.454  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|.-
T Consensus        30 ~G~nGsGKSTLl~~l~G~~   48 (206)
T TIGR03608        30 IGESGSGKSTLLNIIGLLE   48 (206)
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999999964

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=94.80  E-value=0.017  Score=48.60  Aligned_cols=19  Identities=37%  Similarity=0.770  Sum_probs=17.6

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        34 ~G~nGsGKSTLl~~l~Gl~   52 (220)
T cd03263          34 LGHNGAGKTTTLKMLTGEL   52 (220)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            6999999999999999974

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=94.78  E-value=0.017  Score=49.39  Aligned_cols=19  Identities=32%  Similarity=0.452  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        34 ~G~nGsGKSTLl~~l~Gl~   52 (243)
T TIGR02315        34 IGPSGAGKSTLLRCINRLV   52 (243)
T ss_pred             ECCCCCCHHHHHHHHhCCc
Confidence            6999999999999999964

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=94.77  E-value=0.11  Score=38.84  Aligned_cols=18  Identities=28%  Similarity=0.501  Sum_probs=15.7

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|.+|+||||++..+...
T Consensus         6 ~G~~gvGKt~l~~~~~~~   23 (124)
T smart00010        6 IGDSGVGKVGKSARFVQF   23 (124)
T ss_pred             ECCCChhHHHHHHHHhcC
Confidence            699999999999998544

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=94.77  E-value=0.018  Score=48.16  Aligned_cols=19  Identities=37%  Similarity=0.733  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        32 ~G~nGsGKSTLl~~l~G~~   50 (210)
T cd03269          32 LGPNGAGKTTTIRMILGII   50 (210)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999964

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=94.76  E-value=0.017  Score=49.11  Aligned_cols=19  Identities=37%  Similarity=0.716  Sum_probs=17.6

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        37 ~G~nGsGKSTLl~~l~G~~   55 (233)
T cd03258          37 IGRSGAGKSTLIRCINGLE   55 (233)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999975

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=94.75  E-value=0.018  Score=48.19  Aligned_cols=19  Identities=32%  Similarity=0.424  Sum_probs=17.6

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        32 ~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03262          32 IGPSGSGKSTLLRCINLLE   50 (213)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999964

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=94.75  E-value=0.017  Score=48.31  Aligned_cols=19  Identities=37%  Similarity=0.604  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        33 ~G~nGsGKSTLl~~l~G~~   51 (214)
T cd03292          33 VGPSGAGKSTLLKLIYKEE   51 (214)
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999999964

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=94.75  E-value=0.018  Score=48.55  Aligned_cols=19  Identities=21%  Similarity=0.398  Sum_probs=17.6

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        19 ~G~NGsGKSTLlk~i~Gl~   37 (213)
T PRK15177         19 LAAPGSGKTTLTRLLCGLD   37 (213)
T ss_pred             ECCCCCCHHHHHHHHhCCc
Confidence            5999999999999999974

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=94.74  E-value=0.18  Score=40.85  Aligned_cols=66  Identities=20%  Similarity=0.184  Sum_probs=39.9

Q ss_pred             CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCc
Q 024586           41 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA  120 (265)
Q Consensus        41 ~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~  120 (265)
                      ....+.|+|||+...     ......+.      .+|.+++++..+.... ..-..+++.+.+. +    .++.+|+|++
T Consensus        91 ~~~d~viiDtpp~~~-----~~~~~~l~------~aD~vliv~~~~~~~~-~~~~~~~~~l~~~-~----~~~~vV~N~~  153 (179)
T cd03110          91 EGAELIIIDGPPGIG-----CPVIASLT------GADAALLVTEPTPSGL-HDLERAVELVRHF-G----IPVGVVINKY  153 (179)
T ss_pred             cCCCEEEEECcCCCc-----HHHHHHHH------cCCEEEEEecCCcccH-HHHHHHHHHHHHc-C----CCEEEEEeCC
Confidence            345789999997532     12222222      6799999976664222 2223455555443 2    5678999999


Q ss_pred             cCC
Q 024586          121 QLS  123 (265)
Q Consensus       121 D~~  123 (265)
                      |..
T Consensus       154 ~~~  156 (179)
T cd03110         154 DLN  156 (179)
T ss_pred             CCC
Confidence            863

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=94.71  E-value=0.018  Score=46.90  Aligned_cols=19  Identities=37%  Similarity=0.657  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        32 ~G~nGsGKSTLl~~l~G~~   50 (178)
T cd03229          32 LGPSGSGKSTLLRCIAGLE   50 (178)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999974

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=94.70  E-value=0.018  Score=47.65  Aligned_cols=20  Identities=40%  Similarity=0.655  Sum_probs=18.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCc
Q 024586            1 MGKGGVGKSSTVNSIIGEKA   20 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~   20 (265)
                      +|+||+|||||++.|++...
T Consensus        34 ~GpSGAGKSTllkLi~~~e~   53 (223)
T COG2884          34 TGPSGAGKSTLLKLIYGEER   53 (223)
T ss_pred             ECCCCCCHHHHHHHHHhhhc
Confidence            59999999999999999764

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=94.70  E-value=0.018  Score=48.41  Aligned_cols=19  Identities=32%  Similarity=0.527  Sum_probs=17.6

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        37 ~G~nGsGKSTLl~~i~G~~   55 (221)
T TIGR02211        37 VGSSGSGKSTLLHLLGGLD   55 (221)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999974

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=94.69  E-value=0.022  Score=48.39  Aligned_cols=22  Identities=36%  Similarity=0.607  Sum_probs=19.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCccc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVT   22 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~   22 (265)
                      +|+.|+|||||.++|.|.....
T Consensus        36 MGPNGsGKSTLa~~i~G~p~Y~   57 (251)
T COG0396          36 MGPNGSGKSTLAYTIMGHPKYE   57 (251)
T ss_pred             ECCCCCCHHHHHHHHhCCCCce
Confidence            6999999999999999986433

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=94.69  E-value=0.019  Score=46.20  Aligned_cols=19  Identities=32%  Similarity=0.583  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        32 ~G~nGsGKSTLl~~i~G~~   50 (163)
T cd03216          32 LGENGAGKSTLMKILSGLY   50 (163)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999975

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=94.68  E-value=0.019  Score=48.92  Aligned_cols=19  Identities=32%  Similarity=0.527  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        41 ~G~nGsGKSTLl~~l~Gl~   59 (233)
T PRK11629         41 VGSSGSGKSTLLHLLGGLD   59 (233)
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999999964

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=94.68  E-value=0.019  Score=48.33  Aligned_cols=20  Identities=30%  Similarity=0.566  Sum_probs=17.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCc
Q 024586            1 MGKGGVGKSSTVNSIIGEKA   20 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~   20 (265)
                      +|+||+|||||+.+|-+-+.
T Consensus        34 iGpSGSGKSTlLRclN~LE~   53 (240)
T COG1126          34 IGPSGSGKSTLLRCLNGLEE   53 (240)
T ss_pred             ECCCCCCHHHHHHHHHCCcC
Confidence            69999999999999998653

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=94.67  E-value=0.018  Score=48.17  Aligned_cols=19  Identities=37%  Similarity=0.686  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        31 ~G~nGsGKSTLl~~l~G~~   49 (213)
T cd03235          31 VGPNGAGKSTLLKAILGLL   49 (213)
T ss_pred             ECCCCCCHHHHHHHHcCCC
Confidence            5999999999999999974

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=94.66  E-value=0.019  Score=47.85  Aligned_cols=19  Identities=37%  Similarity=0.707  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        32 ~G~nGsGKSTLl~~l~Gl~   50 (208)
T cd03268          32 LGPNGAGKTTTMKIILGLI   50 (208)
T ss_pred             ECCCCCCHHHHHHHHhCCc
Confidence            5999999999999999964

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=94.66  E-value=0.018  Score=49.05  Aligned_cols=19  Identities=32%  Similarity=0.564  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        33 ~G~nGsGKSTLl~~l~Gl~   51 (241)
T cd03256          33 IGPSGAGKSTLLRCLNGLV   51 (241)
T ss_pred             ECCCCCCHHHHHHHHhCCc
Confidence            5999999999999999964

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=94.64  E-value=0.02  Score=48.64  Aligned_cols=19  Identities=37%  Similarity=0.662  Sum_probs=17.6

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        32 ~G~nGsGKSTLl~~l~Gl~   50 (232)
T cd03218          32 LGPNGAGKTTTFYMIVGLV   50 (232)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999964

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=94.60  E-value=0.019  Score=43.02  Aligned_cols=16  Identities=31%  Similarity=0.644  Sum_probs=14.8

Q ss_pred             CCCCCCCHHHHHHHHh
Q 024586            1 MGKGGVGKSSTVNSII   16 (265)
Q Consensus         1 vG~tg~GKSSliN~ll   16 (265)
                      +|+||+|||||++.+.
T Consensus        21 ~GpSGsGKSTLl~~l~   36 (107)
T cd00820          21 TGDSGIGKTELALELI   36 (107)
T ss_pred             EcCCCCCHHHHHHHhh
Confidence            5999999999999986

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=94.57  E-value=0.036  Score=48.54  Aligned_cols=19  Identities=42%  Similarity=0.674  Sum_probs=17.1

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      .|.||+||||+||.|.|-.
T Consensus        30 FG~SGsGKTslin~IaGL~   48 (352)
T COG4148          30 FGPSGSGKTSLINMIAGLT   48 (352)
T ss_pred             ecCCCCChhhHHHHHhccC
Confidence            4899999999999999964

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=94.57  E-value=0.02  Score=47.04  Aligned_cols=19  Identities=32%  Similarity=0.546  Sum_probs=17.0

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+||||+++.|.+..
T Consensus         8 ~G~sGsGKsTl~~~l~~~~   26 (186)
T PRK10078          8 MGPSGSGKDSLLAALRQRE   26 (186)
T ss_pred             ECCCCCCHHHHHHHHhccC
Confidence            5999999999999998763

>PRK13849 putative crown gall tumor protein VirC1; Provisional

Probab=94.55  E-value=0.12  Score=44.16  Aligned_cols=66  Identities=18%  Similarity=0.154  Sum_probs=36.0

Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHh---cCcCcCCcEEEEEe
Q 024586           42 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDN---FGEQIWKRALIVLT  118 (265)
Q Consensus        42 g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~---~g~~~~~~~ivV~t  118 (265)
                      +..+.||||||..+     ......+.      .+|.+|+.+..+...+. .-..+++.+.+.   ...+  .+..+|+|
T Consensus        83 ~yD~iiID~pp~~~-----~~~~~al~------~aD~vliP~~ps~~d~~-~~~~~~~~v~~~~~~~~~~--l~~~iv~~  148 (231)
T PRK13849         83 GFDYALADTHGGSS-----ELNNTIIA------SSNLLLIPTMLTPLDID-EALSTYRYVIELLLSENLA--IPTAILRQ  148 (231)
T ss_pred             CCCEEEEeCCCCcc-----HHHHHHHH------HCCEEEEeccCcHHHHH-HHHHHHHHHHHHHHHhCCC--CCeEEEEE
Confidence            46789999999642     22223333      56888877555432111 112333333332   2222  45668999


Q ss_pred             Ccc
Q 024586          119 HAQ  121 (265)
Q Consensus       119 k~D  121 (265)
                      .++
T Consensus       149 ~~~  151 (231)
T PRK13849        149 RVP  151 (231)
T ss_pred             ecc
Confidence            886

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=94.55  E-value=0.021  Score=47.94  Aligned_cols=19  Identities=32%  Similarity=0.625  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|.+|+|||||++.|.|..
T Consensus        37 ~G~nGsGKSTLl~~l~Gl~   55 (218)
T cd03266          37 LGPNGAGKTTTLRMLAGLL   55 (218)
T ss_pred             ECCCCCCHHHHHHHHhCCc
Confidence            5999999999999999964

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=94.55  E-value=0.021  Score=47.82  Aligned_cols=19  Identities=37%  Similarity=0.702  Sum_probs=17.6

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        32 ~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03301          32 LGPSGCGKTTTLRMIAGLE   50 (213)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999974

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=94.52  E-value=0.021  Score=49.49  Aligned_cols=19  Identities=37%  Similarity=0.615  Sum_probs=17.6

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        33 ~G~nGsGKSTLl~~l~Gl~   51 (255)
T PRK11248         33 LGPSGCGKTTLLNLIAGFV   51 (255)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999975

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=94.49  E-value=0.023  Score=46.53  Aligned_cols=19  Identities=21%  Similarity=0.454  Sum_probs=17.6

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        32 ~G~nGsGKSTLl~~l~G~~   50 (182)
T cd03215          32 AGLVGNGQTELAEALFGLR   50 (182)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999975

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=94.49  E-value=0.022  Score=47.19  Aligned_cols=19  Identities=26%  Similarity=0.545  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        32 ~G~nGsGKSTLl~~l~G~~   50 (198)
T TIGR01189        32 TGPNGIGKTTLLRILAGLL   50 (198)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999964

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=94.48  E-value=0.02  Score=49.26  Aligned_cols=18  Identities=28%  Similarity=0.482  Sum_probs=16.9

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|++|+|||||++.|.|.
T Consensus        38 ~G~nGsGKSTLl~~l~Gl   55 (253)
T PRK14242         38 IGPSGCGKSTFLRCLNRM   55 (253)
T ss_pred             ECCCCCCHHHHHHHHHhh
Confidence            599999999999999996

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=94.48  E-value=0.022  Score=48.49  Aligned_cols=19  Identities=37%  Similarity=0.557  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        32 ~G~nGsGKSTLl~~l~Gl~   50 (236)
T cd03219          32 IGPNGAGKTTLFNLISGFL   50 (236)
T ss_pred             ECCCCCCHHHHHHHHcCCC
Confidence            5999999999999999964

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=94.48  E-value=0.022  Score=48.63  Aligned_cols=19  Identities=32%  Similarity=0.606  Sum_probs=17.6

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        34 ~G~nGsGKSTLl~~l~Gl~   52 (239)
T cd03296          34 LGPSGSGKTTLLRLIAGLE   52 (239)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999974

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=94.46  E-value=0.022  Score=48.04  Aligned_cols=19  Identities=37%  Similarity=0.660  Sum_probs=17.6

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        37 ~G~nGsGKSTLl~~l~G~~   55 (228)
T cd03257          37 VGESGSGKSTLARAILGLL   55 (228)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999974

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=94.46  E-value=0.022  Score=48.37  Aligned_cols=19  Identities=42%  Similarity=0.604  Sum_probs=17.6

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        18 ~G~nGsGKSTLl~~l~Gl~   36 (230)
T TIGR02770        18 VGESGSGKSLTCLAILGLL   36 (230)
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999999975

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=94.46  E-value=0.023  Score=47.49  Aligned_cols=19  Identities=32%  Similarity=0.489  Sum_probs=17.6

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        34 ~G~nGsGKSTLl~~l~G~~   52 (207)
T PRK13539         34 TGPNGSGKTTLLRLIAGLL   52 (207)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999975

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=94.46  E-value=0.022  Score=48.65  Aligned_cols=18  Identities=44%  Similarity=0.741  Sum_probs=17.1

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|++|+|||||++.|.|.
T Consensus        32 ~G~nGsGKSTLl~~l~Gl   49 (243)
T TIGR01978        32 MGPNGSGKSTLSKTIAGH   49 (243)
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            599999999999999997

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=94.45  E-value=0.023  Score=48.14  Aligned_cols=19  Identities=26%  Similarity=0.489  Sum_probs=17.6

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        35 ~G~nGsGKSTLl~~l~G~~   53 (229)
T cd03254          35 VGPTGAGKTTLINLLMRFY   53 (229)
T ss_pred             ECCCCCCHHHHHHHHhcCc
Confidence            5999999999999999975

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=94.43  E-value=0.096  Score=47.50  Aligned_cols=19  Identities=26%  Similarity=0.496  Sum_probs=17.1

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      .|.+|+||||++|+|++.-
T Consensus       168 ~G~tGSGKTTll~aLl~~i  186 (344)
T PRK13851        168 CGPTGSGKTTMSKTLISAI  186 (344)
T ss_pred             ECCCCccHHHHHHHHHccc
Confidence            4999999999999999863

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=94.42  E-value=0.023  Score=49.28  Aligned_cols=19  Identities=32%  Similarity=0.707  Sum_probs=17.7

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        32 vG~nGsGKSTLlk~l~Gl~   50 (255)
T cd03236          32 VGPNGIGKSTALKILAGKL   50 (255)
T ss_pred             ECCCCCCHHHHHHHHhCCc
Confidence            6999999999999999975

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=94.42  E-value=0.022  Score=54.22  Aligned_cols=20  Identities=40%  Similarity=0.654  Sum_probs=18.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCc
Q 024586            1 MGKGGVGKSSTVNSIIGEKA   20 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~   20 (265)
                      ||+||+|||||+|.|+|-..
T Consensus       353 vG~SGaGKSTLl~lL~G~~~  372 (559)
T COG4988         353 VGASGAGKSTLLNLLLGFLA  372 (559)
T ss_pred             ECCCCCCHHHHHHHHhCcCC
Confidence            69999999999999999753

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=94.41  E-value=0.023  Score=48.44  Aligned_cols=19  Identities=26%  Similarity=0.410  Sum_probs=17.6

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        33 ~G~nGsGKSTLl~~l~G~~   51 (236)
T TIGR03864        33 LGPNGAGKSTLFSLLTRLY   51 (236)
T ss_pred             ECCCCCCHHHHHHHHhCCc
Confidence            5999999999999999974

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=94.41  E-value=0.023  Score=47.64  Aligned_cols=19  Identities=37%  Similarity=0.658  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        29 ~G~nGsGKSTLl~~l~G~~   47 (214)
T cd03297          29 FGASGAGKSTLLRCIAGLE   47 (214)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999974

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PLN02772 guanylate kinase

Probab=94.41  E-value=0.037  Score=50.85  Aligned_cols=47  Identities=17%  Similarity=0.323  Sum_probs=28.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccc-cCCCCCCCccEEEEeeeCCeEEEEEe
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTV-STFQSEGPRPVMVSRSRAGFTLNIVD   49 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~-~~~~~~t~~~~~~~~~~~g~~v~iiD   49 (265)
                      +|++|||||||++.|+....... .....+|+.+.  ..+.+|..+.+++
T Consensus       141 sGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR--~gE~dG~dY~Fvs  188 (398)
T PLN02772        141 SGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR--EMEKDGVHYHFTE  188 (398)
T ss_pred             ECCCCCCHHHHHHHHhhhccccccccccccCCCCc--ccccCCceEeeCC
Confidence            59999999999999987642111 12334555443  3345565554443

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=94.41  E-value=0.023  Score=49.13  Aligned_cols=18  Identities=39%  Similarity=0.780  Sum_probs=16.9

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|+.|+|||||+.+|+|-
T Consensus        36 iGPNGaGKSTLlK~iLGl   53 (254)
T COG1121          36 IGPNGAGKSTLLKAILGL   53 (254)
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            699999999999999993

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=94.40  E-value=0.024  Score=48.01  Aligned_cols=19  Identities=32%  Similarity=0.606  Sum_probs=17.6

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        42 ~G~nGsGKSTLl~~i~Gl~   60 (228)
T PRK10584         42 IGESGSGKSTLLAILAGLD   60 (228)
T ss_pred             ECCCCCCHHHHHHHHHcCC
Confidence            5999999999999999974

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=94.39  E-value=0.024  Score=49.52  Aligned_cols=19  Identities=37%  Similarity=0.431  Sum_probs=17.6

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        56 ~G~nGsGKSTLl~~L~Gl~   74 (269)
T cd03294          56 MGLSGSGKSTLLRCINRLI   74 (269)
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            6999999999999999975

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=94.39  E-value=0.024  Score=48.19  Aligned_cols=19  Identities=42%  Similarity=0.667  Sum_probs=17.6

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        17 ~G~nGsGKSTLl~~l~Gl~   35 (230)
T TIGR01184        17 IGHSGCGKSTLLNLISGLA   35 (230)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999975

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=94.38  E-value=0.066  Score=44.33  Aligned_cols=28  Identities=32%  Similarity=0.459  Sum_probs=18.8

Q ss_pred             CcCcCCcEEEEEeCccCCCCCCCCHHHH
Q 024586          106 GEQIWKRALIVLTHAQLSLPDRLDYEVF  133 (265)
Q Consensus       106 g~~~~~~~ivV~tk~D~~~~~~~~~~~~  133 (265)
                      |+.+.+.=++|+||.|+.+.-+.+.+.+
T Consensus       138 gP~i~~aDllVInK~DLa~~v~~dlevm  165 (202)
T COG0378         138 GPGIFKADLLVINKTDLAPYVGADLEVM  165 (202)
T ss_pred             CCceeEeeEEEEehHHhHHHhCccHHHH
Confidence            4444456789999999976555555443

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=94.36  E-value=0.079  Score=47.60  Aligned_cols=69  Identities=23%  Similarity=0.240  Sum_probs=37.0

Q ss_pred             eEEEEEeCCCCCCCCCCcHHHHHHHHHHHh------cCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEE
Q 024586           43 FTLNIVDTPGLIEGGYVNYHAIQLIKRFLL------NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIV  116 (265)
Q Consensus        43 ~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~------~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV  116 (265)
                      ....||.|-|+.++..       .+..++.      .-..|.++-|  +|+.++...-....+...+    .+.--=++|
T Consensus        85 ~D~ivIEtTGlA~P~p-------v~~t~~~~~~l~~~~~ld~vvtv--VDa~~~~~~~~~~~~~~~~----Qia~AD~iv  151 (323)
T COG0523          85 PDRLVIETTGLADPAP-------VIQTFLTDPELADGVRLDGVVTV--VDAAHFLEGLDAIAELAED----QLAFADVIV  151 (323)
T ss_pred             CCEEEEeCCCCCCCHH-------HHHHhccccccccceeeceEEEE--EeHHHhhhhHHHHHHHHHH----HHHhCcEEE
Confidence            4578999999987632       2222221      1256778888  4554543322211111111    111234899


Q ss_pred             EeCccCCC
Q 024586          117 LTHAQLSL  124 (265)
Q Consensus       117 ~tk~D~~~  124 (265)
                      +||.|+..
T Consensus       152 lNK~Dlv~  159 (323)
T COG0523         152 LNKTDLVD  159 (323)
T ss_pred             EecccCCC
Confidence            99999964

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=94.36  E-value=0.025  Score=46.78  Aligned_cols=19  Identities=42%  Similarity=0.546  Sum_probs=17.6

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        32 ~G~nGsGKSTLl~~l~G~~   50 (195)
T PRK13541         32 KGANGCGKSSLLRMIAGIM   50 (195)
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            6999999999999999975

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=94.35  E-value=0.025  Score=48.41  Aligned_cols=19  Identities=32%  Similarity=0.420  Sum_probs=17.6

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        34 ~G~nGsGKSTLl~~l~G~~   52 (242)
T PRK11124         34 LGPSGAGKSSLLRVLNLLE   52 (242)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999974

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=94.35  E-value=0.025  Score=46.20  Aligned_cols=19  Identities=32%  Similarity=0.630  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        31 ~G~nGsGKStLl~~i~G~~   49 (180)
T cd03214          31 LGPNGAGKSTLLKTLAGLL   49 (180)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999964

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=94.35  E-value=0.024  Score=48.71  Aligned_cols=19  Identities=26%  Similarity=0.412  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        35 ~G~nGsGKSTLl~~l~G~~   53 (250)
T PRK11264         35 IGPSGSGKTTLLRCINLLE   53 (250)
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999999974

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.35  E-value=0.023  Score=48.82  Aligned_cols=19  Identities=32%  Similarity=0.386  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        35 ~G~nGsGKSTLl~~i~G~~   53 (250)
T PRK14247         35 MGPSGSGKSTLLRVFNRLI   53 (250)
T ss_pred             ECCCCCCHHHHHHHHhccC
Confidence            5999999999999999974

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=94.35  E-value=0.024  Score=49.11  Aligned_cols=18  Identities=33%  Similarity=0.658  Sum_probs=16.9

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|+.|+|||||+++|.|-
T Consensus        34 iGpNG~GKSTLLk~l~g~   51 (258)
T COG1120          34 LGPNGSGKSTLLKCLAGL   51 (258)
T ss_pred             ECCCCCCHHHHHHHHhcc
Confidence            699999999999999984

>PRK10908 cell division protein FtsE; Provisional

Probab=94.35  E-value=0.024  Score=47.77  Aligned_cols=19  Identities=37%  Similarity=0.604  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        34 ~G~nGsGKSTLl~~l~G~~   52 (222)
T PRK10908         34 TGHSGAGKSTLLKLICGIE   52 (222)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999974

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=94.34  E-value=0.024  Score=50.21  Aligned_cols=20  Identities=25%  Similarity=0.526  Sum_probs=18.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCc
Q 024586            1 MGKGGVGKSSTVNSIIGEKA   20 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~   20 (265)
                      +|++|+|||||++.|+|...
T Consensus        37 lG~NGAGKTTllk~l~gl~~   56 (293)
T COG1131          37 LGPNGAGKTTLLKILAGLLK   56 (293)
T ss_pred             ECCCCCCHHHHHHHHhCCcC
Confidence            69999999999999999753

>PRK07952 DNA replication protein DnaC; Validated

Probab=94.32  E-value=0.099  Score=45.10  Aligned_cols=18  Identities=39%  Similarity=0.564  Sum_probs=16.0

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      .|++|+|||+|+.+|...
T Consensus       105 ~G~~GtGKThLa~aia~~  122 (244)
T PRK07952        105 SGKPGTGKNHLAAAICNE  122 (244)
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            389999999999998875

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=94.32  E-value=0.025  Score=47.92  Aligned_cols=19  Identities=32%  Similarity=0.791  Sum_probs=17.6

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        32 ~G~nGsGKSTLl~~l~G~~   50 (230)
T TIGR03410        32 LGRNGVGKTTLLKTLMGLL   50 (230)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999975

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>smart00072 GuKc Guanylate kinase homologues

Probab=94.31  E-value=0.037  Score=45.41  Aligned_cols=19  Identities=37%  Similarity=0.604  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++||||+|+++.|....
T Consensus         8 ~Gpsg~GK~tl~~~L~~~~   26 (184)
T smart00072        8 SGPSGVGKGTLLAELIQEI   26 (184)
T ss_pred             ECCCCCCHHHHHHHHHhcC
Confidence            5999999999999999874

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=94.30  E-value=0.026  Score=47.86  Aligned_cols=19  Identities=32%  Similarity=0.761  Sum_probs=17.7

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|..|+|||||+++|.|-.
T Consensus        35 lG~NGaGKTTlLkti~Gl~   53 (237)
T COG0410          35 LGRNGAGKTTLLKTIMGLV   53 (237)
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            6999999999999999975

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=94.30  E-value=0.1  Score=46.14  Aligned_cols=125  Identities=15%  Similarity=0.164  Sum_probs=65.6

Q ss_pred             EEEEEeCCCCCCCCCCcHHHHHHHHHHHhc-CCccEEEEEEecCCcCCCHHHHHHHH--HHHHhcCcCcCCcEEEEEeCc
Q 024586           44 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLN-KTIDVLLYVDRLDVYRVDNLDKQITR--AITDNFGEQIWKRALIVLTHA  120 (265)
Q Consensus        44 ~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~-~~~d~iL~V~~~d~~r~~~~d~~~l~--~l~~~~g~~~~~~~ivV~tk~  120 (265)
                      .+.++|.||..        ++  |...+.. .--|+.|+++..+......+..+.+.  .+.++      ++++++-||.
T Consensus       126 HVSfVDCPGHD--------iL--MaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~L------khiiilQNKi  189 (466)
T KOG0466|consen  126 HVSFVDCPGHD--------IL--MATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKL------KHIIILQNKI  189 (466)
T ss_pred             EEEeccCCchH--------HH--HHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhh------ceEEEEechh
Confidence            57899999972        21  2222211 12266665543332222222222232  23333      8999999999


Q ss_pred             cCCCCCCCCHHHHHhhchHHHHHHHhccccccccccccCCchhHhhhcCCcCCCCccccccCCCCCCChHHHHHHHHHHh
Q 024586          121 QLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVV  200 (265)
Q Consensus       121 D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ip~~~~~n~~~~~~~~~~~~~lp~~~~W~~~L~~~i~~~~  200 (265)
                      |+.. +....++     -+.+++++.....        ..-|++.++..-             .+.  ++.+.+.|....
T Consensus       190 Dli~-e~~A~eq-----~e~I~kFi~~t~a--------e~aPiiPisAQl-------------kyN--Id~v~eyivkkI  240 (466)
T KOG0466|consen  190 DLIK-ESQALEQ-----HEQIQKFIQGTVA--------EGAPIIPISAQL-------------KYN--IDVVCEYIVKKI  240 (466)
T ss_pred             hhhh-HHHHHHH-----HHHHHHHHhcccc--------CCCceeeehhhh-------------ccC--hHHHHHHHHhcC
Confidence            9963 2222222     2567777754311        123444444320             111  788888888888


Q ss_pred             hCCCcceeccccc
Q 024586          201 LNGSKALLVDKKL  213 (265)
Q Consensus       201 ~~~~~~~~~~~~~  213 (265)
                      |---|.+.....+
T Consensus       241 PvPvRdf~s~prl  253 (466)
T KOG0466|consen  241 PVPVRDFTSPPRL  253 (466)
T ss_pred             CCCccccCCCCcE
Confidence            7776766665543

>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=94.30  E-value=0.18  Score=43.31  Aligned_cols=91  Identities=23%  Similarity=0.330  Sum_probs=47.0

Q ss_pred             CCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEE
Q 024586            2 GKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLY   81 (265)
Q Consensus         2 G~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~   81 (265)
                      |.-|.|||||+.+++++-.       ..+.+  ..+++..+    +.+.|          ..++.+    ....-.+|||
T Consensus        92 GaRGtGKSSLVKA~~~e~~-------~~glr--LVEV~k~d----l~~Lp----------~l~~~L----r~~~~kFIlF  144 (287)
T COG2607          92 GARGTGKSSLVKALLNEYA-------DEGLR--LVEVDKED----LATLP----------DLVELL----RARPEKFILF  144 (287)
T ss_pred             cCCCCChHHHHHHHHHHHH-------hcCCe--EEEEcHHH----HhhHH----------HHHHHH----hcCCceEEEE
Confidence            7889999999999998532       11111  11111100    12222          222333    3345678888


Q ss_pred             EEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCc
Q 024586           82 VDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA  120 (265)
Q Consensus        82 V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~  120 (265)
                      |++++= .-.+...+.++.+.+..-...-.+++|..|--
T Consensus       145 cDDLSF-e~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN  182 (287)
T COG2607         145 CDDLSF-EEGDDAYKALKSALEGGVEGRPANVLFYATSN  182 (287)
T ss_pred             ecCCCC-CCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence            865542 12234455555555433234445677776644

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=94.30  E-value=0.026  Score=46.85  Aligned_cols=19  Identities=32%  Similarity=0.515  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        33 ~G~nGsGKSTLl~~i~G~~   51 (200)
T PRK13540         33 KGSNGAGKTTLLKLIAGLL   51 (200)
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999999975

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	265
3bb1_A	274	Crystal Structure Of Toc34 From Pisum Sativum In Co		3e-91
1h65_A	270	Crystal Structure Of Pea Toc34-A Novel Gtpase Of Th		6e-85
3bb3_A	262	Crystal Structure Of Toc33 From Arabidopsis Thalian		1e-79
3bb4_A	262	Crystal Structure Of Toc33 From Arabidopsis Thalian		2e-79
3def_A	262	Crystal Structure Of Toc33 From Arabidopsis Thalian		7e-79
2j3e_A	249	Dimerization Is Important For The Gtpase Activity O		1e-77

>pdb|3BB1|A Chain A, Crystal Structure Of Toc34 From Pisum Sativum In Complex With Mg2+ And Gmppnp Length = 274

Iteration: 1
 Score =  330 bits (847), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 158/223 (70%), Positives = 189/223 (84%), Gaps = 1/223 (0%)
Query: 1   MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 60
           MGKGGVGKSSTVNSIIGE+ V++S FQSEGPRPVMVSRSRAGFTLNI+DTPGLIEGGY+N
Sbjct: 45  MGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYIN 104
Query: 61  YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 120
             A+ +IK FLL+KTIDVLLYVDRLD YRVDNLDK + +AITD+FG+ IW +A++ LTHA
Sbjct: 105 DMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHA 164
Query: 121 QLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEK 180
           Q S PD L Y+ F SKRSEALL+ V     + KKD Q S +PVVL+ENSGRC KN++DEK
Sbjct: 165 QFSPPDGLPYDEFFSKRSEALLQVVRSGASL-KKDAQASDIPVVLIENSGRCNKNDSDEK 223
Query: 181 VLPNGTAWIPNLVKTITEVVLNGSKALLVDKKLVEGPNPNEKG 223
           VLPNG AWIP+LV+TITEV LN S+++ VDK L++GPNPN++G
Sbjct: 224 VLPNGIAWIPHLVQTITEVALNKSESIFVDKNLIDGPNPNQRG 266

>pdb|1H65|A Chain A, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The Chloroplast Protein Translocon Length = 270

Iteration: 1
 Score =  310 bits (794), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 150/214 (70%), Positives = 179/214 (83%), Gaps = 1/214 (0%)
Query: 2   GKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY 61
           GKGGVGKSSTVNSIIGE+ V++S FQSEGPRPV VSRSRAGFTLNI+DTPGLIEGGY+N 
Sbjct: 46  GKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVXVSRSRAGFTLNIIDTPGLIEGGYIND 105
Query: 62  HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ 121
            A+ +IK FLL+KTIDVLLYVDRLD YRVDNLDK + +AITD+FG+ IW +A++ LTHAQ
Sbjct: 106 XALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQ 165
Query: 122 LSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKV 181
            S PD L Y+ F SKRSEALL+ V     + KKD Q S +PVVL+ENSGRC KN++DEKV
Sbjct: 166 FSPPDGLPYDEFFSKRSEALLQVVRSGASL-KKDAQASDIPVVLIENSGRCNKNDSDEKV 224
Query: 182 LPNGTAWIPNLVKTITEVVLNGSKALLVDKKLVE 215
           LPNG AWIP+LV+TITEV LN S+++ VDK L++
Sbjct: 225 LPNGIAWIPHLVQTITEVALNKSESIFVDKNLID 258

>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In Complex With Gdp And Mg2+ Length = 262

Iteration: 1
 Score =  292 bits (748), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 138/215 (64%), Positives = 170/215 (79%)
Query: 1   MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 60
           +GKGGVGKSSTVNS+IGE+ V VS FQ+EG RPVMVSR+  GFT+NI+DTPGL+E GYVN
Sbjct: 42  LGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVN 101
Query: 61  YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 120
           + A++LIK FL+N+TIDVLLYVDRLDVYRVD LDKQ+  AIT  FG++IW + L+VLTHA
Sbjct: 102 HQALELIKGFLVNRTIDVLLYVDRLDVYRVDELDKQVVIAITQTFGKEIWCKTLLVLTHA 161
Query: 121 QLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEK 180
           Q S PD L YE F SKRS++LLK +   + M+K++ + S + VV  ENSGRC+KN+ DEK
Sbjct: 162 QFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEK 221
Query: 181 VLPNGTAWIPNLVKTITEVVLNGSKALLVDKKLVE 215
            LPNG AWIPNLVK IT+V  N  KA+ VD   +E
Sbjct: 222 ALPNGEAWIPNLVKAITDVATNQRKAIHVDAAALE 256

>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In Complex With Mg2+ And Gmppnp Length = 262

Iteration: 1
 Score =  291 bits (746), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 138/215 (64%), Positives = 169/215 (78%)
Query: 1   MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 60
           +GKGGVGKSSTVNS+IGE+ V VS FQ+EG RPVMVSR+  GFT+NI+DTPGL+E GYVN
Sbjct: 42  LGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVN 101
Query: 61  YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 120
           + A++LIK FL+N+TIDVLLYVDRLDVYRVD LDKQ+  AIT  FG++IW + L+VLTHA
Sbjct: 102 HQALELIKGFLVNRTIDVLLYVDRLDVYRVDELDKQVVIAITQTFGKEIWCKTLLVLTHA 161
Query: 121 QLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEK 180
           Q S PD L YE F SKRS+ LLK +   + M+K++ + S + VV  ENSGRC+KN+ DEK
Sbjct: 162 QFSPPDELSYETFSSKRSDELLKTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEK 221
Query: 181 VLPNGTAWIPNLVKTITEVVLNGSKALLVDKKLVE 215
            LPNG AWIPNLVK IT+V  N  KA+ VD   +E
Sbjct: 222 ALPNGEAWIPNLVKAITDVATNQRKAIHVDAAALE 256

>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana, Dimerization Deficient Mutant R130a Length = 262

Iteration: 1
 Score =  290 bits (741), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 137/215 (63%), Positives = 169/215 (78%)
Query: 1   MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 60
           +GKGGVGKSSTVNS+IGE+ V VS FQ+EG RPVMVSR+  GFT+NI+DTPGL+E GYVN
Sbjct: 42  LGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVN 101
Query: 61  YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 120
           + A++LIK FL+N+TIDVLLYVDRLDVY VD LDKQ+  AIT  FG++IW + L+VLTHA
Sbjct: 102 HQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHA 161
Query: 121 QLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEK 180
           Q S PD L YE F SKRS++LLK +   + M+K++ + S + VV  ENSGRC+KN+ DEK
Sbjct: 162 QFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEK 221
Query: 181 VLPNGTAWIPNLVKTITEVVLNGSKALLVDKKLVE 215
            LPNG AWIPNLVK IT+V  N  KA+ VD   +E
Sbjct: 222 ALPNGEAWIPNLVKAITDVATNQRKAIHVDAAALE 256

>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of Chloroplast Translocon Components Attoc33 And Pstoc159 Length = 249

Iteration: 1
 Score =  285 bits (730), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 135/209 (64%), Positives = 166/209 (79%)
Query: 1   MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 60
           +GKGGVGKSSTVNS+IGE+ V VS FQ+EG RPVMVSR+  GFT+NI+DTPGL+E GYVN
Sbjct: 41  LGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVN 100
Query: 61  YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 120
           + A++LIK FL+N+TIDVLLYVDRLDVY VD LDKQ+  AIT  FG++IW + L+VLTHA
Sbjct: 101 HQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHA 160
Query: 121 QLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEK 180
           Q S PD L YE F SKRS++LLK +   + M+K++ + S + VV  ENSGRC+KN+ DEK
Sbjct: 161 QFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEK 220
Query: 181 VLPNGTAWIPNLVKTITEVVLNGSKALLV 209
            LPNG AWIPNLVK IT+V  N  KA+ V
Sbjct: 221 ALPNGEAWIPNLVKAITDVATNQRKAIHV 249

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	265
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	1e-75
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	2e-72
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	3e-26
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	3e-25
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	1e-21
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	4e-05

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270

 Score =  230 bits (588), Expect = 1e-75
 Identities = 152/222 (68%), Positives = 181/222 (81%), Gaps = 1/222 (0%)

Query: 1   MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 60
           MGKGGVGKSSTVNSIIGE+ V++S FQSEGPRPVMVSRSRAGFTLNI+DTPGLIEGGY+N
Sbjct: 45  MGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYIN 104

Query: 61  YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 120
             A+ +IK FLL+KTIDVLLYVDRLD YRVDNLDK + +AITD+FG+ IW +A++ LTHA
Sbjct: 105 DMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHA 164

Query: 121 QLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEK 180
           Q S PD L Y+ F SKRSEALL+ V       KKD Q S +PVVL+ENSGRC KN++DEK
Sbjct: 165 QFSPPDGLPYDEFFSKRSEALLQVVRSGA-SLKKDAQASDIPVVLIENSGRCNKNDSDEK 223

Query: 181 VLPNGTAWIPNLVKTITEVVLNGSKALLVDKKLVEGPNPNEK 222
           VLPNG AWIP+LV+TITEV LN S+++ VDK L++     + 
Sbjct: 224 VLPNGIAWIPHLVQTITEVALNKSESIFVDKNLIDKLAAADH 265

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262

 Score =  221 bits (565), Expect = 2e-72
 Identities = 137/220 (62%), Positives = 171/220 (77%)

Query: 1   MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 60
           +GKGGVGKSSTVNS+IGE+ V VS FQ+EG RPVMVSR+  GFT+NI+DTPGL+E GYVN
Sbjct: 42  LGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVN 101

Query: 61  YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 120
           + A++LIK FL+N+TIDVLLYVDRLDVY VD LDKQ+  AIT  FG++IW + L+VLTHA
Sbjct: 102 HQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHA 161

Query: 121 QLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEK 180
           Q S PD L YE F SKRS++LLK +   + M+K++ + S + VV  ENSGRC+KN+ DEK
Sbjct: 162 QFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEK 221

Query: 181 VLPNGTAWIPNLVKTITEVVLNGSKALLVDKKLVEGPNPN 220
            LPNG AWIPNLVK IT+V  N  KA+ VD   +E  + +
Sbjct: 222 ALPNGEAWIPNLVKAITDVATNQRKAIHVDAAALEHHHHH 261

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} Length = 239

 Score =  101 bits (253), Expect = 3e-26
 Identities = 44/198 (22%), Positives = 74/198 (37%), Gaps = 21/198 (10%)

Query: 1   MGKGGVGKSSTVNSIIGEKAVTVSTF-QSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV 59
           +GK G GKS+T NSI+G K     T  +S   +    S S     L +VDTPG+ +    
Sbjct: 35  VGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVP 94

Query: 60  NYHAIQLIKRFLLNKT--IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVL 117
           N    + I R +L  +     LL V  L   R    + + T  I   FGE+     +++ 
Sbjct: 95  NAETSKEIIRCILLTSPGPHALLLVVPLG--RYTEEEHKATEKILKMFGERARSFMILIF 152

Query: 118 THAQLSLPDRLDYEVFCSKRSEALLKFVS----------PSTWMKKKDIQGS----FVPV 163
           T          +   +  +  E +   +                 +++ Q +     +  
Sbjct: 153 TRK--DDLGDTNLHDYLREAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQR 210

Query: 164 VLVENSGRCAKNENDEKV 181
           V+ EN   C  N   ++ 
Sbjct: 211 VVRENKEGCYTNRMYQRA 228

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A Length = 260

 Score = 99.7 bits (248), Expect = 3e-25
 Identities = 42/193 (21%), Positives = 73/193 (37%), Gaps = 20/193 (10%)

Query: 1   MGKGGVGKSSTVNSIIGEKAVTVST-FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV 59
           +GK G GKS+  NSI+ ++A       Q+          S     + I+DTP +      
Sbjct: 28  VGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDH 87

Query: 60  NYHAIQLIKRFLLNKT--IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVL 117
                + ++R  L       VLL V +L   R  + D+Q  + + + FGE      +++ 
Sbjct: 88  CEALYKEVQRCYLLSAPGPHVLLLVTQLG--RYTSQDQQAAQRVKEIFGEDAMGHTIVLF 145

Query: 118 THAQLSLPDRLDYEVFCSKRSEALLKFVSP----------STWMKKKDIQGS----FVPV 163
           TH +      L  +      ++AL K V+                 +D Q       +  
Sbjct: 146 THKEDLNGGSLM-DYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIED 204

Query: 164 VLVENSGRCAKNE 176
           +L+E +G    N 
Sbjct: 205 LLMEKNGDHYTNG 217

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 60.6 bits (146), Expect = 1e-10
 Identities = 56/292 (19%), Positives = 85/292 (29%), Gaps = 78/292 (26%)

Query: 2   GKGGVGKSSTVNSIIGEKAV-----------TVSTFQSEGPRPVMVSRSRAGFTLNIVDT 50
           G  G GK+     +     V            +    S      M+ +       N    
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216

Query: 51  PGLIEGGYVNYHAIQL-IKRFLLNKT-IDVLLYVDRLDVYR---VDNLDKQ-----ITR- 99
                   +  H+IQ  ++R L +K   + LL +   +V      +  +        TR 
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL--NVQNAKAWNAFNLSCKILLTTRF 274

Query: 100 -AITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVF-----CSK---RSEALLKFVSP--- 147
             +TD           I L H  ++L       +      C       E L    +P   
Sbjct: 275 KQVTDFLSAATTTH--ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT--TNPRRL 330

Query: 148 -----------STW--------MKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAW 188
                      +TW         K   I  S +  VL     R  K  +   V P     
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN-VLEPAEYR--KMFDRLSVFPPSA-H 386

Query: 189 IP---------NLVKTITEVVLNGSKALLVDKKLVEGPNPNEKGKILIPFIF 231
           IP         +++K+   VV+N     L    LVE   P E   I IP I+
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVN----KLHKYSLVEK-QPKE-STISIPSIY 432

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 2e-06
 Identities = 34/172 (19%), Positives = 61/172 (35%), Gaps = 34/172 (19%)

Query: 55  EGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQI-TRAITDNFGEQIWKRA 113
           E G   Y    ++  F          +VD  D   V ++ K I ++   D+         
Sbjct: 10  ETGEHQYQYKDILSVFEDA-------FVDNFDCKDVQDMPKSILSKEEIDH--------- 53

Query: 114 LIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPS-----TWM----KKKDIQGSFVPVV 164
            I+++   +S   RL +    SK+ E + KFV         ++    K +  Q S +  +
Sbjct: 54  -IIMSKDAVSGTLRL-FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM 111

Query: 165 LVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGSKALLVDKKLVEG 216
            +E   R     ND +V              + + +L    A  V   L++G
Sbjct: 112 YIEQRDRL---YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV---LIDG 157

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413

 Score = 43.5 bits (102), Expect = 4e-05
 Identities = 29/172 (16%), Positives = 60/172 (34%), Gaps = 16/172 (9%)

Query: 1   MGKGGVGKSSTVNSIIGEKAVTVSTFQS---EGPRPVMVSRSRAGFTLNIVDTPGLIEGG 57
            G+ G GKSS +N++ G         ++   E        +      +   D PG+   G
Sbjct: 75  TGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGI---G 131

Query: 58  YVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVL 117
             N+     +++    +  D  + +      +    D  I +AI       + K    V 
Sbjct: 132 STNFPPDTYLEKMKFYE-YDFFIIISATRFKKN---DIDIAKAI-----SMMKKEFYFVR 182

Query: 118 THAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENS 169
           T     + +  D E     + E +L+ +  +     ++   +  P+ L+ N 
Sbjct: 183 TKVDSDITNEADGEPQTFDK-EKVLQDIRLNCVNTFRENGIAEPPIFLLSNK 233

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	265
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	100.0
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	100.0
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.88
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.86
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.78
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.71
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.7
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.68
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.64
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.64
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.64
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.63
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.63
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.63
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.62
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.62
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.61
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.58
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.58
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.57
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.57
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.56
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.56
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.56
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.56
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.55
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.55
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.55
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.55
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.55
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.54
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.54
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.54
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.54
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.54
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.54
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.53
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.53
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.52
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.52
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.52
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.52
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.52
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.52
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.51
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.51
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.51
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.51
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.51
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.51
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.51
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.51
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.51
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.51
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.51
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.5
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.5
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.5
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.5
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.5
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.5
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.49
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.49
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.49
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.49
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.49
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.49
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.49
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.49
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.49
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.49
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.48
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.48
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.48
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.48
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.48
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.48
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.48
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.47
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.47
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.47
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.47
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.47
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.47
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.47
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.46
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.46
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.46
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.46
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.46
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.45
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.45
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.45
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.44
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.44
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.44
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.44
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.43
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.43
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.43
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.43
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.43
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.43
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.43
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.42
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.42
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.42
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.42
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.42
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.42
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.42
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.41
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.41
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.41
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.41
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.4
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.4
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.4
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.4
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.39
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.39
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.39
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.38
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.38
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.38
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.38
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.38
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.38
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.38
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.38
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.36
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.36
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.36
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.35
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.35
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.34
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.34
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.33
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.33
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.33
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.33
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.32
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.32
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.32
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.32
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.3
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.3
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.28
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	98.93
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.27
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.27
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.27
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.25
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.24
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.23
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.23
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.23
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.2
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.2
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.19
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.18
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.18
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.18
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.17
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.17
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.14
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.14
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.11
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.11
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.09
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.09
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.08
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.07
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.05
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.05
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.04
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.03
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.03
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.02
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.02
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.02
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.01
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.01
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.0
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	98.99
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	98.98
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	98.96
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	98.94
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	98.93
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.9
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	98.89
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	98.86
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	98.86
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	98.85
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.84
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.84
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	98.83
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	98.79
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	98.75
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.73
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.69
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.61
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.58
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	98.58
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.53
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.51
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.47
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	98.44
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	98.42
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	98.41
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.32
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	98.26
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.24
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.12
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.96
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.82
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.66
2xxa_A	433	Signal recognition particle protein; protein trans	97.64
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.63
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.63
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.55
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	97.49
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.45
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.41
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.35
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	97.12
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.07
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	97.07
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.06
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	97.06
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	97.02
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	96.94
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.94
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	96.87
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	96.83
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	96.71
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	96.62
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.61
2og2_A	359	Putative signal recognition particle receptor; nuc	96.59
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	96.54
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	95.88
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	95.86
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	95.82
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	95.8
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	95.71
3cwq_A	209	Para family chromosome partitioning protein; alpha	95.67
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	95.52
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	95.5
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	95.49
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	95.48
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	95.48
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	95.46
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	95.41
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	95.41
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	95.4
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	95.4
1b0u_A	262	Histidine permease; ABC transporter, transport pro	95.4
1g6h_A	257	High-affinity branched-chain amino acid transport	95.39
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	95.36
1sgw_A	214	Putative ABC transporter; structural genomics, P p	95.33
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	95.31
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	95.29
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	95.27
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	95.24
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	95.22
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	95.2
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	95.2
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	95.2
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	95.19
1ji0_A	240	ABC transporter; ATP binding protein, structural g	95.19
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	95.13
2ghi_A	260	Transport protein; multidrug resistance protein, M	95.11
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	95.06
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	95.04
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	95.03
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	95.03
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	94.98
2eyu_A	261	Twitching motility protein PILT; pilus retraction	94.97
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	94.8
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	94.78
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	94.75
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	94.72
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	94.68
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	94.61
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	94.55
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	94.4
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	94.39
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	94.37
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	94.32
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	94.32
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	94.3
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	94.29
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	94.27
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	94.22
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	94.21
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	94.21
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	94.18
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	94.16
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	94.16
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	94.14
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	94.14
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	94.12
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	94.01
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	94.0
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	93.78
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	93.78
4a74_A	231	DNA repair and recombination protein RADA; hydrola	93.73
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	93.71
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	93.69
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	93.66
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	93.64
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	93.64
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	93.61
1p9r_A	418	General secretion pathway protein E; bacterial typ	93.61
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	93.6
2ewv_A	372	Twitching motility protein PILT; pilus retraction	93.55
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	93.53
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	93.45
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	93.42
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	93.4
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	93.33
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	93.33
2hf9_A	226	Probable hydrogenase nickel incorporation protein	93.3
3kta_A	182	Chromosome segregation protein SMC; structural mai	93.28
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	93.24
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	93.22
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	93.04
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	92.94
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	92.93
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	92.78
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	92.73
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	92.55
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	92.51
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	92.51
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	92.48
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	92.45
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	92.38
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	92.38
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	92.36
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	92.36
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	92.35
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	92.31
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	92.27
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	92.23
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	92.14
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	92.12
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	92.1
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	92.07
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	91.95
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	91.85
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	91.82
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	91.8
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	91.8
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	91.77
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	91.75
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	91.72
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	91.72
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	91.7
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	91.67
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	91.56
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	91.5
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	91.4
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	91.39
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	91.38
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	91.3
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	91.15
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	91.14
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	90.95
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	90.89
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	90.82
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	90.7
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	90.44
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	90.41
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	90.38
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	90.33
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	90.32
2cvh_A	220	DNA repair and recombination protein RADB; filamen	90.32
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	90.31
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	90.26
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	90.22
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	90.22
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	90.1
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	90.08
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	90.07
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	90.04
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	90.01
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	89.99
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	89.96
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	89.94
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	89.93
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	89.76
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	89.75
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	89.73
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	89.66
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	89.61
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	89.19
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	89.18
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	89.12
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	89.08
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	89.07
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	89.06
1via_A	175	Shikimate kinase; structural genomics, transferase	89.01
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	88.95
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	88.92
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	88.87
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	88.82
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	88.77
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	88.68
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	88.65
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	88.59
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	88.3
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	88.22
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	88.14
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	88.13
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	88.07
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	88.05
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	88.04
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	87.99
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	87.87
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	87.85
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	87.81
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	87.8
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	87.79
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	87.76
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	87.75
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	87.47
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	87.45
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	87.42
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	87.37
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	87.34
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	87.3
1e69_A	322	Chromosome segregation SMC protein; structural mai	87.25
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	86.95
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	86.89
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	86.86
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	86.83
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	86.75
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	86.65
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	86.64
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	86.62
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	86.61
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	86.6
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	86.47
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	86.45
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	86.45
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	86.41
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	86.31
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	86.3
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	86.22
2vli_A	183	Antibiotic resistance protein; transferase, tunica	86.19
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	86.16
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	86.1
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	86.05
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	86.01
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	85.98
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	85.95
3bos_A	242	Putative DNA replication factor; P-loop containing	85.87
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	85.81
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	85.7
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	85.66
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	85.64
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	85.6
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	85.55
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	85.35
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	85.35
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	85.09
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	84.87
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	84.79
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	84.76
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	84.55
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	84.54
2chg_A	226	Replication factor C small subunit; DNA-binding pr	84.43
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	84.28
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	83.99
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	83.9
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	83.74
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	83.72
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	83.68
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	83.67
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	83.63
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	83.28
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	83.18
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	83.15
3bfv_A	271	CAPA1, CAPB2, membrane protein CAPA1, protein tyro	83.08
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	83.0
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	82.97
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	82.94
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	82.79
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	82.54
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	82.23
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	81.96
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	81.89
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	81.53
1tue_A	212	Replication protein E1; helicase, replication, E1E	81.18
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	81.13
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	81.03
2qgz_A	308	Helicase loader, putative primosome component; str	80.98
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	80.61
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	80.61
2iut_A	574	DNA translocase FTSK; nucleotide-binding, chromoso	80.41

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=100.00  E-value=2.5e-33  Score=242.65  Aligned_cols=215  Identities=64%  Similarity=1.016  Sum_probs=184.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+|+|||||+|+|+|...+.++...++|.........+++..+.+|||||+.+.....+.+.+.+.+++...++|++|
T Consensus        42 vG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il  121 (262)
T 3def_A           42 LGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLL  121 (262)
T ss_dssp             EECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEE
T ss_pred             ECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEE
Confidence            59999999999999999987777777888888888888899999999999999888777788888888888778999999


Q ss_pred             EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHHHHHhhchHHHHHHHhccccccccccccCC
Q 024586           81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSF  160 (265)
Q Consensus        81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~  160 (265)
                      ||+++|..+++..+..+++.+.+.++...++|+++|+||+|+.++++..++++++...+.++++++++.+......+...
T Consensus       122 ~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e~~~~~~~~~l~~~i~~~~~~~~~~~~~~~  201 (262)
T 3def_A          122 YVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQEFEDSA  201 (262)
T ss_dssp             EEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHC
T ss_pred             EEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHHHHHHhhhHHHHHHHHHHhCcccccccccc
Confidence            99999987788888999999999999888889999999999987788899999988778889998877654433223345


Q ss_pred             chhHhhhcCCcCCCCccccccCCCCCCChHHHHHHHHHHhhCCCcceeccccccc
Q 024586          161 VPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGSKALLVDKKLVE  215 (265)
Q Consensus       161 ip~~~~~n~~~~~~~~~~~~~lp~~~~W~~~L~~~i~~~~~~~~~~~~~~~~~~~  215 (265)
                      +|+.+++|.+.|..|..++++||++.+|++.|++++.+.+.++++++++++++.+
T Consensus       202 ~pv~~ve~~~~~~~n~~g~~~lp~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (262)
T 3def_A          202 IAVVYAENSGRCSKNDKDEKALPNGEAWIPNLVKAITDVATNQRKAIHVDAAALE  256 (262)
T ss_dssp             CEEEECCCCTTCCBCTTSCBBCTTSCBSCC-CHHHHHHHHTSCSCCEEC------
T ss_pred             CCEEEEeCCCCCCCCCCCCeECCCCCeeHHHHHHHHHHHHhCCCCceeccHHHhh
Confidence            7999999999999999999999999999999999999999999999999988654

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=100.00  E-value=4.4e-33  Score=242.05  Aligned_cols=221  Identities=68%  Similarity=1.079  Sum_probs=192.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+|+|||||+|+|+|.....++...++|..+........+..+.||||||+.+.....+...+.+.+++...++|++|
T Consensus        45 vG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il  124 (270)
T 1h65_A           45 MGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLL  124 (270)
T ss_dssp             EESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEE
T ss_pred             ECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEE
Confidence            59999999999999999987677777778888887788888999999999999887766677777777777667899999


Q ss_pred             EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHHHHHhhchHHHHHHHhccccccccccccCC
Q 024586           81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSF  160 (265)
Q Consensus        81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~  160 (265)
                      ||++++..+++..+..+++.+.+.+|.+.+.|+++|+||+|+.++++.++++|.++..+.+++.+++..++... .+...
T Consensus       125 ~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~  203 (270)
T 1h65_A          125 YVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSKRSEALLQVVRSGASLKKD-AQASD  203 (270)
T ss_dssp             EEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHHHHHHHHHHHHHHHTTCCTT-SGGGC
T ss_pred             EEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHHHHHHHHHHHHHHHHHHhhhhhhh-hhhcc
Confidence            99999876788888899999999999888899999999999987777899999988888888888776555332 22446


Q ss_pred             chhHhhhcCCcCCCCccccccCCCCCCChHHHHHHHHHHhhCCCcceecccccccCCCCCCC
Q 024586          161 VPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGSKALLVDKKLVEGPNPNEK  222 (265)
Q Consensus       161 ip~~~~~n~~~~~~~~~~~~~lp~~~~W~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (265)
                      +|++++++.+.|+++..+++++|....|.+.|++.+.+.+.++++.+++++++++++++..+
T Consensus       204 ~p~~~v~~~~~~~~~~~~~~v~~~~~~w~~~Ll~~l~~~~~~~~~~l~~d~~~~~~~~~~~~  265 (270)
T 1h65_A          204 IPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTITEVALNKSESIFVDKNLIDKLAAADH  265 (270)
T ss_dssp             CCEEECCCCTTCCBCTTSCBBCTTSCBHHHHHHHHHHHHHTSSSCCEECCHHHHHHHHHCC-
T ss_pred             CCEEEEeCCCcccccCCCceECCCCCCcHHHHHHHHHHHHhcCCCceecCHHHhcCCCcccc
Confidence            89999999999999999999999999999999999999999999999999999998877654

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.88  E-value=2.4e-22  Score=170.90  Aligned_cols=144  Identities=26%  Similarity=0.289  Sum_probs=101.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCC--CCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH--hcCCc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQ--SEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL--LNKTI   76 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~--~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l--~~~~~   76 (265)
                      +|.+|||||||+|+|+|..... +..+  ++|..+......+++..+.||||||+.+.....++..+.+.+++  ..+++
T Consensus        35 vG~~g~GKStlin~l~g~~~~~-~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (239)
T 3lxx_A           35 VGKTGAGKSATGNSILGRKVFH-SGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGP  113 (239)
T ss_dssp             ECCTTSSHHHHHHHHHTSCCSC-C-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCC
T ss_pred             ECCCCCCHHHHHHHHcCCCcCc-cCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCC
Confidence            6999999999999999988633 3322  56777888888899999999999999987766666666666654  34689


Q ss_pred             cEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHHHHHhhchHHHHHHHhccc
Q 024586           77 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPST  149 (265)
Q Consensus        77 d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~  149 (265)
                      |++|+|++++  +++..+..+++.+.+.++...++|+++|+||+|+.  +...+++++....+.++++++.|+
T Consensus       114 ~~~l~v~d~~--~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~--~~~~~~~~i~~~~~~l~~l~~~~~  182 (239)
T 3lxx_A          114 HALLLVVPLG--RYTEEEHKATEKILKMFGERARSFMILIFTRKDDL--GDTNLHDYLREAPEDIQDLMDIFG  182 (239)
T ss_dssp             SEEEEEEETT--CCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC--------------CHHHHHHHHHHS
T ss_pred             cEEEEEeeCC--CCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccC--CcccHHHHHHhchHHHHHHHHHcC
Confidence            9999997765  67778889999999888876678999999999984  345677777766677888887765

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.78  E-value=7.7e-18  Score=144.68  Aligned_cols=181  Identities=19%  Similarity=0.213  Sum_probs=125.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCC-CCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH--hcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQS-EGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL--LNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~-~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l--~~~~~d   77 (265)
                      +|.+|||||||+|+|+|...+..+..+. +|..+......+.+..+.||||||+.+.....+.+.+.+.+++  ..+++|
T Consensus        28 vG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d  107 (260)
T 2xtp_A           28 VGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPH  107 (260)
T ss_dssp             EECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCS
T ss_pred             ECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCc
Confidence            6999999999999999988655554333 6777777788889999999999999877655555554554443  236899


Q ss_pred             EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEe-CccCCCCCCCCHHHHHhhc-hHHHHHHHhcccc-cccc
Q 024586           78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLT-HAQLSLPDRLDYEVFCSKR-SEALLKFVSPSTW-MKKK  154 (265)
Q Consensus        78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~t-k~D~~~~~~~~~~~~~~~~-~~~l~~~i~~~~~-~~~~  154 (265)
                      ++|+|++++  +++..+..+++.+.+.++.....|.++|+| |+|+.   +....+++... .+.+++++..+.. +...
T Consensus       108 ~il~V~d~~--~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  182 (260)
T 2xtp_A          108 VLLLVTQLG--RYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLN---GGSLMDYMHDSDNKALSKLVAACGGRICAF  182 (260)
T ss_dssp             EEEEEEETT--CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGT---TCCHHHHHHHCCCHHHHHHHHHTTTCEEEC
T ss_pred             EEEEEEeCC--CCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccC---CccHHHHHHhcchHHHHHHHHHhCCeEEEe
Confidence            999997776  578888889999999988766688898888 99985   23466665432 2445666655532 1100


Q ss_pred             ccccCCchhHhhhcCCcCCCCccccccCCCCCCChHHHHHHHHHHhhCCCccee
Q 024586          155 DIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGSKALL  208 (265)
Q Consensus       155 ~~~~~~ip~~~~~n~~~~~~~~~~~~~lp~~~~W~~~L~~~i~~~~~~~~~~~~  208 (265)
                          ..+|+....+.                  -+..|++.+.+.+......++
T Consensus       183 ----~~~~~SA~~~~------------------gv~~l~~~i~~~~~~~~~~~~  214 (260)
T 2xtp_A          183 ----NNRAEGSNQDD------------------QVKELMDCIEDLLMEKNGDHY  214 (260)
T ss_dssp             ----CTTCCHHHHHH------------------HHHHHHHHHHHHHHHTTTCCC
T ss_pred             ----cCcccccccHH------------------HHHHHHHHHHHHHHhCCCCcC
Confidence                01233211111                  088899998888876543344

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.71  E-value=9.4e-17  Score=134.04  Aligned_cols=117  Identities=19%  Similarity=0.189  Sum_probs=86.1

Q ss_pred             CCCCCCCHHHHHHHHhCCC-cccccCCCCCCCccEEEEee-eCCeEEEEEeCCCCCCCCCCc---HHHHHHHHHHHh-cC
Q 024586            1 MGKGGVGKSSTVNSIIGEK-AVTVSTFQSEGPRPVMVSRS-RAGFTLNIVDTPGLIEGGYVN---YHAIQLIKRFLL-NK   74 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~-~~~~~~~~~~t~~~~~~~~~-~~g~~v~iiDTPG~~~~~~~~---~~~~~~i~~~l~-~~   74 (265)
                      +|.+|+|||||+|+|++.. .+.++..+++|......... .++..+.+|||||+.+.....   +.+...+..++. ..
T Consensus        35 ~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (223)
T 4dhe_A           35 AGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRP  114 (223)
T ss_dssp             EESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCT
T ss_pred             EcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCc
Confidence            5999999999999999987 45666666777766555554 567889999999987654332   223334444443 35


Q ss_pred             CccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           75 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        75 ~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      .+|++++|++... .++..+..+++.+.+.     ..|+++|+||+|+.
T Consensus       115 ~~d~vi~v~d~~~-~~~~~~~~~~~~l~~~-----~~p~i~v~nK~Dl~  157 (223)
T 4dhe_A          115 QLCGMILMMDARR-PLTELDRRMIEWFAPT-----GKPIHSLLTKCDKL  157 (223)
T ss_dssp             TEEEEEEEEETTS-CCCHHHHHHHHHHGGG-----CCCEEEEEECGGGS
T ss_pred             CcCEEEEEEeCCC-CCCHHHHHHHHHHHhc-----CCCEEEEEeccccC
Confidence            6899999977654 4777888888777663     28999999999985

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.70  E-value=3.6e-16  Score=137.98  Aligned_cols=115  Identities=23%  Similarity=0.303  Sum_probs=87.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeC-CeEEEEEeCCCCCCCCCC---cHHHHHHHHHHHhcCCc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA-GFTLNIVDTPGLIEGGYV---NYHAIQLIKRFLLNKTI   76 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~-g~~v~iiDTPG~~~~~~~---~~~~~~~i~~~l~~~~~   76 (265)
                      +|.+|||||||+|+|+|.+...++..+++|..........+ +.++.+|||||+.+....   .+........++  ..+
T Consensus        16 vG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l--~~a   93 (308)
T 3iev_A           16 VGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSL--EEA   93 (308)
T ss_dssp             ECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHH--HHC
T ss_pred             ECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHh--hcC
Confidence            59999999999999999998777888888888887777888 999999999999875411   122223333333  378


Q ss_pred             cEEEEEEecCCcCCCHHHHHH-HHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           77 DVLLYVDRLDVYRVDNLDKQI-TRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        77 d~iL~V~~~d~~r~~~~d~~~-l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      |++++|++.+. ..+..+... ++.+...     ..|+++|+||+|+.
T Consensus        94 D~il~VvD~~~-~~~~~~~~~~~~~l~~~-----~~pvilV~NK~Dl~  135 (308)
T 3iev_A           94 DVILFMIDATE-GWRPRDEEIYQNFIKPL-----NKPVIVVINKIDKI  135 (308)
T ss_dssp             SEEEEEEETTT-BSCHHHHHHHHHHTGGG-----CCCEEEEEECGGGS
T ss_pred             CEEEEEEeCCC-CCCchhHHHHHHHHHhc-----CCCEEEEEECccCC
Confidence            99999977764 356666665 6666552     28999999999985

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.68  E-value=7e-16  Score=135.77  Aligned_cols=117  Identities=22%  Similarity=0.233  Sum_probs=87.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHH-HHHHHHHHHhcCCccEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH-AIQLIKRFLLNKTIDVL   79 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~-~~~~i~~~l~~~~~d~i   79 (265)
                      +|.+|||||||+|+|+|...+.++..+++|..........++.++.+|||||+.++...-.+ .......++  ..+|++
T Consensus        13 vG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l--~~ad~i   90 (301)
T 1wf3_A           13 VGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL--ADVNAV   90 (301)
T ss_dssp             ECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT--SSCSEE
T ss_pred             ECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHH--hcCCEE
Confidence            69999999999999999988777777777777666666678899999999999865432111 222222222  589999


Q ss_pred             EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      |+|++.+. +++..+..+++.+.+..+   ..|+++|+||+|+.
T Consensus        91 l~VvD~~~-~~~~~~~~i~~~l~~~~~---~~p~ilV~NK~Dl~  130 (301)
T 1wf3_A           91 VWVVDLRH-PPTPEDELVARALKPLVG---KVPILLVGNKLDAA  130 (301)
T ss_dssp             EEEEETTS-CCCHHHHHHHHHHGGGTT---TSCEEEEEECGGGC
T ss_pred             EEEEECCC-CCChHHHHHHHHHHhhcC---CCCEEEEEECcccC
Confidence            99987764 467777777777766532   28999999999985

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.64  E-value=2.9e-15  Score=118.04  Aligned_cols=115  Identities=19%  Similarity=0.223  Sum_probs=78.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+|+|||||+|+|++......+..+++|..........++..+.+|||||..+..............++  ..+|+++
T Consensus         7 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~--~~~~~~i   84 (161)
T 2dyk_A            7 VGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRAL--EDAEVVL   84 (161)
T ss_dssp             ECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHT--TTCSEEE
T ss_pred             ECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHH--HhCCEEE
Confidence            59999999999999999875445555666667777777888999999999998764433333333333332  4789999


Q ss_pred             EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|++... .++..+..+.+.+.+.     ..|+++|+||+|+.
T Consensus        85 ~v~d~~~-~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~  121 (161)
T 2dyk_A           85 FAVDGRA-ELTQADYEVAEYLRRK-----GKPVILVATKVDDP  121 (161)
T ss_dssp             EEEESSS-CCCHHHHHHHHHHHHH-----TCCEEEEEECCCSG
T ss_pred             EEEECCC-cccHhHHHHHHHHHhc-----CCCEEEEEECcccc
Confidence            9987764 3666666666666653     28999999999985

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.64  E-value=1.4e-15  Score=131.94  Aligned_cols=117  Identities=20%  Similarity=0.247  Sum_probs=73.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccC-------CCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHH----
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVST-------FQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLI----   67 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~-------~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i----   67 (265)
                      +|.+|+|||||+|+|++...+....       .+..+..........+|.  .++||||||+++.....+.+...+    
T Consensus        14 vG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~   93 (274)
T 3t5d_A           14 VGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYID   93 (274)
T ss_dssp             EECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHHHH
Confidence            6999999999999999988654432       122223333344445554  889999999976532221111111    


Q ss_pred             ---HHHHh-----------cCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           68 ---KRFLL-----------NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        68 ---~~~l~-----------~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                         ..++.           ..++|++||++......+...+..+++.+..      ..|+++|+||+|+.
T Consensus        94 ~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~------~~pvi~V~nK~D~~  157 (274)
T 3t5d_A           94 SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTL  157 (274)
T ss_dssp             HHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT------TSCEEEEESSGGGS
T ss_pred             HHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc------cCCEEEEEeccCCC
Confidence               22221           2357899999654444588888888888776      28999999999984

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.64  E-value=6.7e-15  Score=119.94  Aligned_cols=115  Identities=20%  Similarity=0.186  Sum_probs=71.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC-cccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCc---HHHHHHHHHHHh-cCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK-AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN---YHAIQLIKRFLL-NKT   75 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~-~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~---~~~~~~i~~~l~-~~~   75 (265)
                      +|.+|+|||||+|+|++.. ....+...++|.......  .+ ..+.+|||||+.+.....   +.+...+..++. ...
T Consensus        29 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (195)
T 1svi_A           29 AGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI--IN-DELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREE  105 (195)
T ss_dssp             EEBTTSSHHHHHHHHHTC-------------CCEEEEE--ET-TTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTT
T ss_pred             ECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEE--EC-CcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhc
Confidence            5999999999999999986 333444444454443332  23 368999999987654432   222233333432 246


Q ss_pred             ccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           76 IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        76 ~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      +|++++|++.+. ..+..+..+++.+...     ..|+++|+||+|+.+
T Consensus       106 ~~~~i~v~d~~~-~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~~  148 (195)
T 1svi_A          106 LKAVVQIVDLRH-APSNDDVQMYEFLKYY-----GIPVIVIATKADKIP  148 (195)
T ss_dssp             EEEEEEEEETTS-CCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSC
T ss_pred             CCEEEEEEECCC-CCCHHHHHHHHHHHHc-----CCCEEEEEECcccCC
Confidence            699999987664 4666666667766652     279999999999953

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.63  E-value=2e-15  Score=121.61  Aligned_cols=118  Identities=19%  Similarity=0.199  Sum_probs=82.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHH-HHHHHHHHHhcCCccEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH-AIQLIKRFLLNKTIDVL   79 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~-~~~~i~~~l~~~~~d~i   79 (265)
                      +|.+|+|||||+|+|.+.....++..+++|.........+++..+.+|||||+.+.....+. .......+  ...+|++
T Consensus        10 vG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~--~~~ad~~   87 (172)
T 2gj8_A           10 AGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQE--IEQADRV   87 (172)
T ss_dssp             EESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHH--HHTCSEE
T ss_pred             ECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHH--HHhCCEE
Confidence            69999999999999999875556666677777777777888999999999999653221111 11111111  1488999


Q ss_pred             EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ++|++.+... +..+..++..+.+.....  .|+++|+||+|+.
T Consensus        88 i~v~D~~~~~-s~~~~~~~~~~~~~~~~~--~p~ilv~NK~Dl~  128 (172)
T 2gj8_A           88 LFMVDGTTTD-AVDPAEIWPEFIARLPAK--LPITVVRNKADIT  128 (172)
T ss_dssp             EEEEETTTCC-CCSHHHHCHHHHHHSCTT--CCEEEEEECHHHH
T ss_pred             EEEEECCCCC-CHHHHHHHHHHHHhcccC--CCEEEEEECccCC
Confidence            9998876532 223556777776654333  7999999999984

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.63  E-value=9e-15  Score=122.92  Aligned_cols=121  Identities=19%  Similarity=0.228  Sum_probs=77.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHH--HHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH--AIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~--~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|+|++.... ++..+.+|...........+..+.+|||||+.+.......  ....+..+  ...+|+
T Consensus        35 vG~~~vGKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~--~~~~d~  111 (228)
T 2qu8_A           35 SGAPNVGKSSFMNIVSRANVD-VQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITAL--AHINGV  111 (228)
T ss_dssp             ECSTTSSHHHHHHHHTTTCEE-EECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHH--HTSSEE
T ss_pred             ECCCCCCHHHHHHHHhCCCCc-cCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHh--hccccE
Confidence            699999999999999998753 4555556666666666778889999999999764322211  11222222  247799


Q ss_pred             EEEEEecCCcC-CC-HHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCC
Q 024586           79 LLYVDRLDVYR-VD-NLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR  127 (265)
Q Consensus        79 iL~V~~~d~~r-~~-~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~  127 (265)
                      +++|++++... +. ..+..++..+...+.   ..|+++|+||+|+.....
T Consensus       112 ~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~---~~piilv~nK~Dl~~~~~  159 (228)
T 2qu8_A          112 ILFIIDISEQCGLTIKEQINLFYSIKSVFS---NKSIVIGFNKIDKCNMDS  159 (228)
T ss_dssp             EEEEEETTCTTSSCHHHHHHHHHHHHTCC----CCCEEEEEECGGGCC--C
T ss_pred             EEEEEecccccCcchHHHHHHHHHHHHhhc---CCcEEEEEeCcccCCchh
Confidence            99998876532 43 233456666655422   289999999999964333

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.63  E-value=8.3e-16  Score=142.64  Aligned_cols=126  Identities=25%  Similarity=0.249  Sum_probs=87.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCc--HHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN--YHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~--~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|+|++.+.+.++..+++|..........++..+.+|||||+.+.....  .+....+........+|+
T Consensus       201 vG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~  280 (456)
T 4dcu_A          201 IGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEV  280 (456)
T ss_dssp             ECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSE
T ss_pred             ecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCE
Confidence            599999999999999998877788888888887777788899999999999986543211  111112221111136799


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHHH
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEV  132 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~~  132 (265)
                      +|+|++... .++..+..++..+.+..     +++++|+||+|+.+.+..+.++
T Consensus       281 ~llviD~~~-~~~~~~~~~~~~~~~~~-----~~~ilv~NK~Dl~~~~~~~~~~  328 (456)
T 4dcu_A          281 VAVVLDGEE-GIIEQDKRIAGYAHEAG-----KAVVIVVNKWDAVDKDESTMKE  328 (456)
T ss_dssp             EEEEEETTT-CCCHHHHHHHHHHHHTT-----CEEEEEEECGGGSCCCSSHHHH
T ss_pred             EEEEEeCCC-CcCHHHHHHHHHHHHcC-----CCEEEEEEChhcCCCchHHHHH
Confidence            999976654 47888888888887632     8999999999997545444443

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.62  E-value=1.7e-14  Score=117.06  Aligned_cols=114  Identities=18%  Similarity=0.167  Sum_probs=77.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCc---HHHHHHHHHHH-hcCCc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN---YHAIQLIKRFL-LNKTI   76 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~---~~~~~~i~~~l-~~~~~   76 (265)
                      +|.+|+|||||+|+|++......++..++|.......   .+..+.+|||||+.......   +.+......++ ....+
T Consensus        29 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~---~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (195)
T 3pqc_A           29 VGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYL---VNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSL  105 (195)
T ss_dssp             EEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEE---ETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTE
T ss_pred             ECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEE---ECCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCc
Confidence            5999999999999999988555555555554443322   23468899999986543322   12222333333 23577


Q ss_pred             cEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           77 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        77 d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      |++++|++.+. .....+..+++.+....     .|+++|+||+|+.
T Consensus       106 ~~vi~v~d~~~-~~~~~~~~~~~~~~~~~-----~p~i~v~nK~Dl~  146 (195)
T 3pqc_A          106 QMVFLLVDGRI-PPQDSDLMMVEWMKSLN-----IPFTIVLTKMDKV  146 (195)
T ss_dssp             EEEEEEEETTS-CCCHHHHHHHHHHHHTT-----CCEEEEEECGGGS
T ss_pred             eEEEEEecCCC-CCCHHHHHHHHHHHHcC-----CCEEEEEEChhcC
Confidence            99999977653 45666677777776652     8999999999985

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.62  E-value=7.9e-16  Score=142.01  Aligned_cols=125  Identities=25%  Similarity=0.254  Sum_probs=82.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcH--HHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY--HAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~--~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|+|+|.....++..+++|.........++|..+.+|||||+.+.....+  +....++.......+|+
T Consensus       181 vG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~  260 (436)
T 2hjg_A          181 IGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEV  260 (436)
T ss_dssp             ECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSE
T ss_pred             EcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCE
Confidence            6999999999999999998766787788888777777888999999999999865432110  11112211111136799


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHH
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE  131 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~  131 (265)
                      +++|++++. ..+..+..++..+.+..     +++++|+||+|+.+.+..+.+
T Consensus       261 ~llv~D~~~-~~s~~~~~~~~~~~~~~-----~~iiiv~NK~Dl~~~~~~~~~  307 (436)
T 2hjg_A          261 VAVVLDGEE-GIIEQDKRIAGYAHEAG-----KAVVIVVNKWDAVDKDESTMK  307 (436)
T ss_dssp             EEEEEETTT-CCCHHHHHHHHHHHHTT-----CEEEEEEECGGGSCCCTTHHH
T ss_pred             EEEEEcCCc-CCcHHHHHHHHHHHHcC-----CcEEEEEECccCCCcchHHHH
Confidence            999977764 46777777777766532     899999999999654443333

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.61  E-value=6.5e-15  Score=136.01  Aligned_cols=115  Identities=19%  Similarity=0.296  Sum_probs=76.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCC--CCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGG--YVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~--~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      ||.+|||||||+|+|+|...+.+++.+++|.........++|..+.+|||||+....  ...+.+......++  .++|+
T Consensus         7 vG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~--~~ad~   84 (439)
T 1mky_A            7 VGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMI--READL   84 (439)
T ss_dssp             ECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHH--TTCSE
T ss_pred             ECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHH--HhCCE
Confidence            699999999999999999876778888888888888888999999999999986431  12233333333232  58999


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|+|++... .++..+..+.+.+.+..     +|+++|+||+|+.
T Consensus        85 il~V~D~~~-~~~~~d~~i~~~l~~~~-----~p~ilv~NK~D~~  123 (439)
T 1mky_A           85 VLFVVDGKR-GITKEDESLADFLRKST-----VDTILVANKAENL  123 (439)
T ss_dssp             EEEEEETTT-CCCHHHHHHHHHHHHHT-----CCEEEEEESCCSH
T ss_pred             EEEEEECCC-CCCHHHHHHHHHHHHcC-----CCEEEEEeCCCCc
Confidence            999977653 47777777777776542     8999999999973

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.58  E-value=5.7e-15  Score=127.01  Aligned_cols=115  Identities=13%  Similarity=0.119  Sum_probs=82.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCc---HHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN---YHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~---~~~~~~i~~~l~~~~~d   77 (265)
                      +|.+|+|||||+|+|+|... .++..+++|.........+++..+.+|||||+.+.....   .......+.++....+|
T Consensus         7 vG~~n~GKSTL~n~L~g~~~-~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d   85 (256)
T 3iby_A            7 IGNPNCGKTTLFNALTNANQ-RVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYD   85 (256)
T ss_dssp             EESTTSSHHHHHHHHHTTSE-EEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCS
T ss_pred             ECCCCCCHHHHHHHHHCCCC-CccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCC
Confidence            59999999999999999874 677788888888888888899999999999997654310   11111234455556899


Q ss_pred             EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      ++++|++.+.   ......+...+.+.     ..|+++|+||+|+..
T Consensus        86 ~vi~VvDas~---~~~~~~l~~~l~~~-----~~pvilv~NK~Dl~~  124 (256)
T 3iby_A           86 CIINVIDACH---LERHLYLTSQLFEL-----GKPVVVALNMMDIAE  124 (256)
T ss_dssp             EEEEEEEGGG---HHHHHHHHHHHTTS-----CSCEEEEEECHHHHH
T ss_pred             EEEEEeeCCC---chhHHHHHHHHHHc-----CCCEEEEEEChhcCC
Confidence            9999966553   12333444444433     389999999999853

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.58  E-value=1.8e-14  Score=115.64  Aligned_cols=117  Identities=12%  Similarity=0.067  Sum_probs=71.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|+|++.........+..+..........++.  .+.+|||||..+..       .....++  ..+|+
T Consensus        16 ~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~--~~~d~   86 (180)
T 2g6b_A           16 VGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFR-------SVTHAYY--RDAHA   86 (180)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC---------------CCG--GGCSE
T ss_pred             ECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHH-------HHHHHHc--cCCCE
Confidence            5999999999999999887432222222333333334455664  78999999964321       1112222  36899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRL  128 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~  128 (265)
                      +++|++++.......-..++..+......  ..|+++|+||+|+......
T Consensus        87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~~~  134 (180)
T 2g6b_A           87 LLLLYDVTNKASFDNIQAWLTEIHEYAQH--DVALMLLGNKVDSAHERVV  134 (180)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECCSTTSCCCS
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEECcccCccccc
Confidence            99998876532112224556666665433  3799999999999654433

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.57  E-value=1.9e-14  Score=115.29  Aligned_cols=107  Identities=15%  Similarity=0.099  Sum_probs=73.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+|||||||+|+|++... .....+..|.........+++..+.+|||||..+......       .  ....+|+++
T Consensus        14 ~G~~~~GKssl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-------~--~~~~~d~~i   83 (178)
T 2lkc_A           14 MGHVDHGKTTLLDAIRHSKV-TEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRA-------R--GAQVTDIVI   83 (178)
T ss_dssp             ESCTTTTHHHHHHHHHTTCS-SCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCC-------S--SCCCCCEEE
T ss_pred             ECCCCCCHHHHHHHHhCCcc-ccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHH-------H--HHhhCCEEE
Confidence            59999999999999999874 3333334444444456677889999999999865432221       1  124789999


Q ss_pred             EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|++++. .........++.+..   .  ..|+++|+||+|+.
T Consensus        84 ~v~d~~~-~~~~~~~~~l~~~~~---~--~~p~ilv~nK~Dl~  120 (178)
T 2lkc_A           84 LVVAADD-GVMPQTVEAINHAKA---A--NVPIIVAINKMDKP  120 (178)
T ss_dssp             EEEETTC-CCCHHHHHHHHHHGG---G--SCCEEEEEETTTSS
T ss_pred             EEEECCC-CCcHHHHHHHHHHHh---C--CCCEEEEEECccCC
Confidence            9987764 234455555544432   2  27899999999995

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.57  E-value=1.3e-14  Score=125.97  Aligned_cols=114  Identities=16%  Similarity=0.216  Sum_probs=83.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcH--HHH-HHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY--HAI-QLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~--~~~-~~i~~~l~~~~~d   77 (265)
                      +|.+|+|||||+|+|+|.. +.++..+++|...........+..+.+|||||+.+......  ... ...+.++....+|
T Consensus         9 vG~~n~GKSTLin~l~g~~-~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d   87 (274)
T 3i8s_A            9 IGNPNSGKTTLFNQLTGSR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDAD   87 (274)
T ss_dssp             EECTTSSHHHHHHHHHTTC-EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCS
T ss_pred             ECCCCCCHHHHHHHHhCCC-cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCC
Confidence            5999999999999999998 47778888888888788888889999999999987542110  111 1223344456899


Q ss_pred             EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ++++|++...  . .....+...+.+..     .|+++|+||+|+.
T Consensus        88 ~ii~VvD~~~--~-~~~~~~~~~l~~~~-----~p~ivv~NK~Dl~  125 (274)
T 3i8s_A           88 LLINVVDASN--L-ERNLYLTLQLLELG-----IPCIVALNMLDIA  125 (274)
T ss_dssp             EEEEEEEGGG--H-HHHHHHHHHHHHHT-----CCEEEEEECHHHH
T ss_pred             EEEEEecCCC--h-HHHHHHHHHHHhcC-----CCEEEEEECccch
Confidence            9999966553  2 33445555665542     8999999999984

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.56  E-value=4.6e-14  Score=111.68  Aligned_cols=114  Identities=15%  Similarity=0.053  Sum_probs=71.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|+|++.... ....+..+..........++  ..+.+|||||..+.......       ++  ..+|+
T Consensus        11 ~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~-------~~--~~~d~   80 (168)
T 1z2a_A           11 VGNGAVGKSSMIQRYCKGIFT-KDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKA-------YY--RGAQA   80 (168)
T ss_dssp             ECSTTSSHHHHHHHHHHCCCC-CCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHH-------HH--TTCCE
T ss_pred             ECcCCCCHHHHHHHHHcCCCC-CCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHH-------Hh--cCCCE
Confidence            599999999999999987632 11122222334444455555  47899999997544332221       11  37899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR  127 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~  127 (265)
                      +++|++++..........+++.+.....   ..|+++|+||+|+.+...
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~~~~  126 (168)
T 1z2a_A           81 CVLVFSTTDRESFEAISSWREKVVAEVG---DIPTALVQNKIDLLDDSC  126 (168)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHC---SCCEEEEEECGGGGGGCS
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECcccCcccc
Confidence            9999887753211222345555555442   279999999999864333

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.56  E-value=3e-14  Score=131.54  Aligned_cols=112  Identities=24%  Similarity=0.336  Sum_probs=77.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCC---------cHHHHHHHHHHH
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV---------NYHAIQLIKRFL   71 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~---------~~~~~~~i~~~l   71 (265)
                      +|.+|||||||+|+|+|.....+++.+++|..+......++|..+.+|||||+......         .......+.   
T Consensus       186 vG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~---  262 (439)
T 1mky_A          186 VGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIE---  262 (439)
T ss_dssp             ECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHHH---
T ss_pred             ECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHh---
Confidence            69999999999999999987678888888888777788899999999999998432211         111222333   


Q ss_pred             hcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           72 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        72 ~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                         .+|++++|++... ..+..+..+.+.+....     +++++|+||+|+..
T Consensus       263 ---~ad~vllv~d~~~-~~~~~~~~i~~~l~~~~-----~~~ilv~NK~Dl~~  306 (439)
T 1mky_A          263 ---KADVVVIVLDATQ-GITRQDQRMAGLMERRG-----RASVVVFNKWDLVV  306 (439)
T ss_dssp             ---HCSEEEEEEETTT-CCCHHHHHHHHHHHHTT-----CEEEEEEECGGGST
T ss_pred             ---hCCEEEEEEeCCC-CCCHHHHHHHHHHHHcC-----CCEEEEEECccCCC
Confidence               5799999976653 35666666666555432     89999999999864

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.56  E-value=1.6e-14  Score=114.54  Aligned_cols=112  Identities=16%  Similarity=0.115  Sum_probs=69.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCC-CCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~-t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (265)
                      +|.+|+|||||+|+|++.....  ...++ +.........+.+  ..+.+|||||..+.....       ..++  ..+|
T Consensus        12 ~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~-------~~~~--~~~~   80 (170)
T 1z0j_A           12 LGDTGVGKSSIMWRFVEDSFDP--NINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALA-------PMYY--RGSA   80 (170)
T ss_dssp             ECCTTSSHHHHHHHHHHSCCCT--TCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGT-------HHHH--TTCS
T ss_pred             ECcCCCCHHHHHHHHHcCCCCC--CCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhccc-------HhhC--cCCC
Confidence            5999999999999999886321  11111 1112222334444  578999999984322111       1111  4789


Q ss_pred             EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCC
Q 024586           78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP  125 (265)
Q Consensus        78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~  125 (265)
                      ++++|++++..........+++.+.....+.  .++++|+||+|+...
T Consensus        81 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~~iilv~nK~Dl~~~  126 (170)
T 1z0j_A           81 AAIIVYDITKEETFSTLKNWVRELRQHGPPS--IVVAIAGNKCDLTDV  126 (170)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--SEEEEEEECTTCGGG
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECCccccc
Confidence            9999988775322223345666666653333  789999999999643

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.56  E-value=3.5e-14  Score=112.57  Aligned_cols=111  Identities=19%  Similarity=0.199  Sum_probs=70.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|+|++... .....+..+.........+++  ..+.+|||||..+.......   .+      ..+|+
T Consensus         9 ~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~---~~------~~~d~   78 (170)
T 1g16_A            9 IGDSGVGKSCLLVRFVEDKF-NPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTA---YY------RGAMG   78 (170)
T ss_dssp             EESTTSSHHHHHHHHHHCCC-CC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHH---HH------TTEEE
T ss_pred             ECcCCCCHHHHHHHHHhCCC-CCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHH---Hh------ccCCE
Confidence            59999999999999998764 222222233333344555555  46899999997544332221   11      37899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +++|++++..........++..+.......  .|+++|+||+|+.
T Consensus        79 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~  121 (170)
T 1g16_A           79 IILVYDITDERTFTNIKQWFKTVNEHANDE--AQLLLVGNKSDME  121 (170)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccCC
Confidence            999988765321122345666666655333  7999999999993

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.55  E-value=9.7e-14  Score=110.94  Aligned_cols=114  Identities=17%  Similarity=0.092  Sum_probs=71.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCC-CCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~-t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (265)
                      +|.+|+|||||+|+|++....  ....++ +..........++  ..+.+|||||..+..   ......+      ..+|
T Consensus        21 ~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---~~~~~~~------~~~d   89 (179)
T 1z0f_A           21 IGDMGVGKSCLLHQFTEKKFM--ADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFR---AVTRSYY------RGAA   89 (179)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCC--SSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTC---HHHHHHH------HTCS
T ss_pred             ECCCCCCHHHHHHHHHcCCCC--CCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhh---hhHHHHh------ccCC
Confidence            599999999999999987642  222222 2222233344444  478999999964322   1222222      2789


Q ss_pred             EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCC
Q 024586           78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR  127 (265)
Q Consensus        78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~  127 (265)
                      ++++|++++..........++..+......+  .|+++|+||+|+.....
T Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~  137 (179)
T 1z0f_A           90 GALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIILIGNKADLEAQRD  137 (179)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCC
T ss_pred             EEEEEEeCcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECcccccccc
Confidence            9999988775322222345666666654333  78999999999954333

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.55  E-value=3.1e-14  Score=113.01  Aligned_cols=116  Identities=20%  Similarity=0.122  Sum_probs=69.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|+|++....  ....++...........++  ..+.+|||||..+..   .    ....++  ..+|+
T Consensus         9 ~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~---~----~~~~~~--~~~~~   77 (172)
T 2erx_A            9 FGAGGVGKSSLVLRFVKGTFR--ESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFP---A----MQRLSI--SKGHA   77 (172)
T ss_dssp             ECCTTSSHHHHHHHHHTCCCC--SSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCH---H----HHHHHH--HHCSE
T ss_pred             ECCCCCCHHHHHHHHHcCCCC--CCCCCCccccEEEEEEECCEEEEEEEEECCCchhhH---H----HHHHhc--ccCCE
Confidence            599999999999999987632  1122222222222333343  468999999975421   1    112222  25799


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR  127 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~  127 (265)
                      +++|++++..........++..+.+..+.....|+++|+||+|+.+.+.
T Consensus        78 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~  126 (172)
T 2erx_A           78 FILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSRE  126 (172)
T ss_dssp             EEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCC
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccc
Confidence            9999887753222223455666666543222379999999999854333

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.55  E-value=4.7e-14  Score=112.45  Aligned_cols=113  Identities=17%  Similarity=0.268  Sum_probs=73.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+|||||||+|+|.|... .++..+++|.........+++..+.+|||||+.+...... .......++...++|+++
T Consensus         9 vG~~gvGKStL~~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-~~~~~~~~~~~~~~~~~i   86 (165)
T 2wji_A            9 IGNPNVGKSTIFNALTGENV-YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSI-DEIIARDYIINEKPDLVV   86 (165)
T ss_dssp             ECSTTSSHHHHHHHHHCCSS-SCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSH-HHHHHHHHHHHHCCSEEE
T ss_pred             ECCCCCCHHHHHHHHhCCCe-eccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcch-hHHHHHHHHhcCCCCEEE
Confidence            69999999999999999764 4455555566655666677889999999999876432221 111122233324789999


Q ss_pred             EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|++...  + .....++..+.+.     ..|+++|+||+|+.
T Consensus        87 ~v~D~~~--~-~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~  121 (165)
T 2wji_A           87 NIVDATA--L-ERNLYLTLQLMEM-----GANLLLALNKMDLA  121 (165)
T ss_dssp             EEEETTC--H-HHHHHHHHHHHHT-----TCCEEEEEECHHHH
T ss_pred             EEecCCc--h-hHhHHHHHHHHhc-----CCCEEEEEEchHhc
Confidence            9976653  2 2233455555442     27999999999984

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.55  E-value=2.6e-14  Score=113.46  Aligned_cols=117  Identities=19%  Similarity=0.120  Sum_probs=70.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|+|++.... ....+..+.........+++.  .+.+|||||..+...       ....+  ...+|+
T Consensus        12 ~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~--~~~~d~   81 (170)
T 1z08_A           12 LGEGCVGKTSLVLRYCENKFN-DKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHA-------LGPIY--YRDSNG   81 (170)
T ss_dssp             ECCTTSCHHHHHHHHHHCCCC-SSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC--------------CCS--STTCSE
T ss_pred             ECcCCCCHHHHHHHHHcCCCC-cCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhh-------hHHHH--hccCCE
Confidence            599999999999999987632 222222233333334455554  678999999643211       11111  147899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD  129 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~  129 (265)
                      +++|++++..........+++.+....+..  .|+++|+||+|+.+....+
T Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~~~  130 (170)
T 1z08_A           82 AILVYDITDEDSFQKVKNWVKELRKMLGNE--ICLCIVGNKIDLEKERHVS  130 (170)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHGGG--SEEEEEEECGGGGGGCCSC
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CeEEEEEECcccccccccC
Confidence            999988765321122345666666654433  7899999999996433333

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.55  E-value=2e-14  Score=117.41  Aligned_cols=113  Identities=18%  Similarity=0.086  Sum_probs=69.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCccc-ccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVT-VSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVL   79 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~-~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~i   79 (265)
                      +|.+|+|||||+|+|++..... ..+..+.+...........+..+.+|||||..+.....       ..++  ..+|++
T Consensus        29 vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~--~~~d~i   99 (192)
T 2fg5_A           29 LGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLA-------PMYY--RGSAAA   99 (192)
T ss_dssp             EECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGT-------HHHH--TTCSEE
T ss_pred             ECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhh-------HHhh--ccCCEE
Confidence            5999999999999999876321 11111111111112222245678999999964322111       1122  378999


Q ss_pred             EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      ++|++++..........++..+.+.....  .|+++|+||+|+.+
T Consensus       100 ilV~d~~~~~s~~~~~~~~~~i~~~~~~~--~piiiv~NK~Dl~~  142 (192)
T 2fg5_A          100 VIVYDITKQDSFYTLKKWVKELKEHGPEN--IVMAIAGNKCDLSD  142 (192)
T ss_dssp             EEEEETTCTHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGG
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECccccc
Confidence            99988765322223345666666654333  79999999999953

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.54  E-value=2.5e-14  Score=114.66  Aligned_cols=113  Identities=18%  Similarity=0.093  Sum_probs=73.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|+|++.... ....+..+.........+++  ..+.+|||||..+.......       +  ...+|+
T Consensus        15 ~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~-------~--~~~~d~   84 (181)
T 3tw8_B           15 IGDSGVGKSSLLLRFADNTFS-GSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITST-------Y--YRGTHG   84 (181)
T ss_dssp             ECCTTSCHHHHHHHHCSCC----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGG-------G--GTTCSE
T ss_pred             ECCCCCCHHHHHHHHhcCCCC-CccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHH-------H--hccCCE
Confidence            699999999999999998742 22233334444445566677  57899999996543322221       1  147899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD  126 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~  126 (265)
                      +++|++++.......-..++..+.+...   ..|+++|+||+|+.+.+
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~  129 (181)
T 3tw8_B           85 VIVVYDVTSAESFVNVKRWLHEINQNCD---DVCRILVGNKNDDPERK  129 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHCT---TSEEEEEEECTTCGGGC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECCCCchhc
Confidence            9999887753222222345666655443   27999999999985433

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.54  E-value=9.6e-14  Score=113.05  Aligned_cols=107  Identities=14%  Similarity=0.131  Sum_probs=67.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCC-CCccEEEEeeeCC-------------------------------------
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMVSRSRAG-------------------------------------   42 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~-t~~~~~~~~~~~g-------------------------------------   42 (265)
                      +|.+|+|||||+|+|++....  ....++ +.........+++                                     
T Consensus        13 ~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (208)
T 3clv_A           13 LGESSVGKSSIVLRLTKDTFH--ENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNYNENL   90 (208)
T ss_dssp             ECCTTSSHHHHHHHHHHSCCC--SSCCCCCSCEEEEEEEETTC-------------------------------CCCTTT
T ss_pred             ECCCCCCHHHHHHHHHhCcCC--CCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccccccCcc
Confidence            599999999999999998642  222222 2222223333333                                     


Q ss_pred             --eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCc
Q 024586           43 --FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA  120 (265)
Q Consensus        43 --~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~  120 (265)
                        ..+.+|||||..+....       ...++  ..+|++++|++++..........++..+....+    .|+++|+||+
T Consensus        91 ~~~~~~i~Dt~G~~~~~~~-------~~~~~--~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~----~piilv~NK~  157 (208)
T 3clv_A           91 CNIKFDIWDTAGQERYASI-------VPLYY--RGATCAIVVFDISNSNTLDRAKTWVNQLKISSN----YIIILVANKI  157 (208)
T ss_dssp             CEEEEEEEECTTGGGCTTT-------HHHHH--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC----CEEEEEEECT
T ss_pred             ceeEEEEEECCCcHHHHHH-------HHHHh--cCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC----CcEEEEEECC
Confidence              67899999996443221       12222  378999999877642211222345555655433    8999999999


Q ss_pred             cC
Q 024586          121 QL  122 (265)
Q Consensus       121 D~  122 (265)
                      |.
T Consensus       158 D~  159 (208)
T 3clv_A          158 DK  159 (208)
T ss_dssp             TC
T ss_pred             Cc
Confidence            93

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.54  E-value=4.6e-14  Score=114.90  Aligned_cols=117  Identities=21%  Similarity=0.198  Sum_probs=76.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|+|++... .....+..+..........++  ..+.+|||||..+.....       ..++  ..+|+
T Consensus        22 ~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~--~~~d~   91 (196)
T 3tkl_A           22 IGDSGVGKSCLLLRFADDTY-TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT-------SSYY--RGAHG   91 (196)
T ss_dssp             ECSTTSSHHHHHHHHHHSCC-CSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTH-------HHHH--TTCSE
T ss_pred             ECcCCCCHHHHHHHHHcCCC-CCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhH-------HHHH--hhCCE
Confidence            59999999999999998764 222223334444445566666  468999999964332211       1222  47899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD  129 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~  129 (265)
                      +++|++++..........++..+.......  .|+++|+||+|+.+.+...
T Consensus        92 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~ilv~nK~Dl~~~~~~~  140 (196)
T 3tkl_A           92 IIVVYDVTDQESFNNVKQWLQEIDRYASEN--VNKLLVGNKCDLTTKKVVD  140 (196)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCTTTCCSC
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccccccccC
Confidence            999988775322223345666676665433  7999999999996544433

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.54  E-value=8.1e-14  Score=119.91  Aligned_cols=113  Identities=21%  Similarity=0.312  Sum_probs=81.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+|+|||||+|+|+|... .++..+++|...........+..+.+|||||..+......+ ....+.++....+|+++
T Consensus        11 vG~~nvGKTsL~n~l~g~~~-~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~-e~v~~~~~~~~~~d~ii   88 (258)
T 3a1s_A           11 AGCPNVGKTSLFNALTGTKQ-YVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSID-EKIARDYLLKGDADLVI   88 (258)
T ss_dssp             ECCTTSSHHHHHHHHHTTCE-EEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHH-HHHHHHHHHHSCCSEEE
T ss_pred             ECCCCCCHHHHHHHHHCCCC-cccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHH-HHHHHHHHhhcCCCEEE
Confidence            59999999999999999875 46777778887777777788899999999999765433211 11223444446899999


Q ss_pred             EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|++.+.  + .....++..+.+.     ..|+++|+||+|+.
T Consensus        89 ~V~D~t~--~-~~~~~~~~~l~~~-----~~pvilv~NK~Dl~  123 (258)
T 3a1s_A           89 LVADSVN--P-EQSLYLLLEILEM-----EKKVILAMTAIDEA  123 (258)
T ss_dssp             EEEETTS--C-HHHHHHHHHHHTT-----TCCEEEEEECHHHH
T ss_pred             EEeCCCc--h-hhHHHHHHHHHhc-----CCCEEEEEECcCCC
Confidence            9976653  3 2333455555443     28999999999984

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.54  E-value=1.7e-13  Score=110.60  Aligned_cols=111  Identities=20%  Similarity=0.149  Sum_probs=71.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeE--EEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFT--LNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~--v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|+|++...  .....+++..........++..  +.+|||||..+.......   .+.      .+|+
T Consensus        10 ~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~---~~~------~~~~   78 (189)
T 4dsu_A           10 VGADGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQ---YMR------TGEG   78 (189)
T ss_dssp             ECCTTSSHHHHHHHHHHSSC--CCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHH---HHH------HCSE
T ss_pred             ECCCCCCHHHHHHHHHhCCC--CCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHH---HHh------cCCE
Confidence            69999999999999998763  3334445555555555666665  678999997654332221   122      5799


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +++|+++++.........++..+...... ...|+++|+||+|+.
T Consensus        79 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~i~v~nK~Dl~  122 (189)
T 4dsu_A           79 FLCVFAINNTKSFEDIHHYREQIKRVKDS-EDVPMVLVGNKCDLP  122 (189)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHTTC-SCCCEEEEEECTTSS
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECccCc
Confidence            99998887532112334455555554321 237999999999995

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.54  E-value=1.4e-13  Score=110.81  Aligned_cols=115  Identities=17%  Similarity=0.180  Sum_probs=73.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|+|++...  .....+++..........++.  .+.+|||||..+..    .   ....++  ..+|+
T Consensus        24 ~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----~---~~~~~~--~~~d~   92 (187)
T 2a9k_A           24 VGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA----A---IRDNYF--RSGEG   92 (187)
T ss_dssp             ECSTTSSHHHHHHHHHHSCC--CCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH----H---HHHHHH--HHCSE
T ss_pred             ECCCCCCHHHHHHHHhhCCC--CCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccH----H---HHHHHh--ccCCE
Confidence            59999999999999998763  333344444444444556664  68999999975321    1   112222  26799


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR  127 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~  127 (265)
                      +++|++++..........++..+...... ...|+++|+||+|+.+...
T Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~  140 (187)
T 2a9k_A           93 FLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQ  140 (187)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTCCEEEEEECGGGGGGCC
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccccCc
Confidence            99998877532112334555566555431 1279999999999854333

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.53  E-value=4.9e-14  Score=117.11  Aligned_cols=111  Identities=13%  Similarity=0.155  Sum_probs=70.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCc-cEEEEeee-CC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPR-PVMVSRSR-AG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI   76 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~-~~~~~~~~-~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~   76 (265)
                      +|.+|||||||+|+|++....  .....+... ........ ++  ..+.+|||||..........+   +      ..+
T Consensus        17 vG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~---~------~~~   85 (218)
T 4djt_A           17 IGDGGVGKTTYINRVLDGRFE--KNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVY---Y------IGA   85 (218)
T ss_dssp             ECCTTSSHHHHHCBCTTCSTT--CEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHH---H------TTC
T ss_pred             ECCCCCCHHHHHHHHhcCCCC--CCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHH---h------hcC
Confidence            699999999999999987632  111112111 11111111 22  678999999976544333221   1      378


Q ss_pred             cEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           77 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        77 d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      |++++|++++..........++..+....+.+  .|+++|+||+|+..
T Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~  131 (218)
T 4djt_A           86 SGAILFFDVTSRITCQNLARWVKEFQAVVGNE--APIVVCANKIDIKN  131 (218)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHHCSS--SCEEEEEECTTCC-
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCcc
Confidence            99999988775332223345667777665544  79999999999853

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.53  E-value=1.3e-14  Score=133.10  Aligned_cols=115  Identities=22%  Similarity=0.322  Sum_probs=77.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe-EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF-TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVL   79 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~-~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~i   79 (265)
                      +|.+|+|||||+|+|++.+...++...++|.........+.+. ++.+|||||+.+.........+....++  ..+|++
T Consensus        40 vG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l--~~aD~v  117 (423)
T 3qq5_A           40 AGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVF--YRADCG  117 (423)
T ss_dssp             ECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHH--TSCSEE
T ss_pred             ECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHH--hcCCEE
Confidence            5999999999999999998766677777888877777777765 8999999999876543322222222222  478999


Q ss_pred             EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCC
Q 024586           80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP  125 (265)
Q Consensus        80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~  125 (265)
                      |+|+  |. .....+..+++.+.+..     .|+++|+||+|+...
T Consensus       118 llVv--D~-~~~~~~~~~l~~l~~~~-----~piIvV~NK~Dl~~~  155 (423)
T 3qq5_A          118 ILVT--DS-APTPYEDDVVNLFKEME-----IPFVVVVNKIDVLGE  155 (423)
T ss_dssp             EEEC--SS-SCCHHHHHHHHHHHHTT-----CCEEEECCCCTTTTC
T ss_pred             EEEE--eC-CChHHHHHHHHHHHhcC-----CCEEEEEeCcCCCCc
Confidence            9995  44 56677888888888762     899999999999643

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.52  E-value=1.8e-13  Score=110.30  Aligned_cols=118  Identities=17%  Similarity=0.127  Sum_probs=73.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeE--EEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFT--LNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~--v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|+|++...  .....+++..........++..  +.+|||||..+.......   .++      .+|+
T Consensus        24 ~G~~~~GKSsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~---~~~------~~d~   92 (183)
T 3kkq_A           24 VGDGGVGKSALTIQFFQKIF--VDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQ---YMR------TGDG   92 (183)
T ss_dssp             ECSTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHH---HHH------HCSE
T ss_pred             ECCCCCCHHHHHHHHHhCCC--CCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHH---HHh------cCCE
Confidence            69999999999999998753  3333344444444555666654  566999997543322221   222      5799


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCH
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY  130 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~  130 (265)
                      +++|++++.......-..++..+.+.... ...|+++|+||+|+......+.
T Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~v~~  143 (183)
T 3kkq_A           93 FLIVYSVTDKASFEHVDRFHQLILRVKDR-ESFPMILVANKVDLMHLRKVTR  143 (183)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTS-SCCCEEEEEECTTCSTTCCSCH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCCchhccCcCH
Confidence            99998887532112233455555543321 1278999999999964444333

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.52  E-value=1.3e-14  Score=134.51  Aligned_cols=115  Identities=19%  Similarity=0.268  Sum_probs=74.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCC-cHHHHHHHHHHHhcCCccEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV-NYHAIQLIKRFLLNKTIDVL   79 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~-~~~~~~~i~~~l~~~~~d~i   79 (265)
                      +|.+|||||||+|+|+|...+.+...+++|.........+.+..+.+|||||+...... .+.+......++  .++|++
T Consensus        29 vG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~--~~ad~i  106 (456)
T 4dcu_A           29 VGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM--DEADVI  106 (456)
T ss_dssp             ECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHH--HHCSEE
T ss_pred             ECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhH--hhCCEE
Confidence            69999999999999999887677777888888888888889999999999998743222 223333333333  378999


Q ss_pred             EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      |+|++... .++..+..+++.+.+.     .+|+++|+||+|+.
T Consensus       107 l~VvD~~~-~~~~~d~~l~~~l~~~-----~~pvilV~NK~D~~  144 (456)
T 4dcu_A          107 IFMVNGRE-GVTAADEEVAKILYRT-----KKPVVLAVNKLDNT  144 (456)
T ss_dssp             EEEEESSS-CSCHHHHHHHHHHTTC-----CSCEEEEEECC---
T ss_pred             EEEEeCCC-CCChHHHHHHHHHHHc-----CCCEEEEEECccch
Confidence            99976442 4788888888777652     38999999999985

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.52  E-value=9.1e-14  Score=110.42  Aligned_cols=109  Identities=11%  Similarity=0.071  Sum_probs=69.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+|+|||||+|+|++....  . .. .|.........+++..+.+|||||..+....       ...++  ..+|+++
T Consensus        13 ~G~~~~GKssl~~~l~~~~~~--~-~~-~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~-------~~~~~--~~~d~ii   79 (171)
T 1upt_A           13 LGLDGAGKTTILYRLQVGEVV--T-TI-PTIGFNVETVTYKNLKFQVWDLGGLTSIRPY-------WRCYY--SNTDAVI   79 (171)
T ss_dssp             ECSTTSSHHHHHHHHHHSSCC--C-CC-CCSSEEEEEEEETTEEEEEEEECCCGGGGGG-------GGGGC--TTCSEEE
T ss_pred             ECCCCCCHHHHHHHHhcCCCC--C-cC-CcCccceEEEEECCEEEEEEECCCChhhhHH-------HHHHh--ccCCEEE
Confidence            599999999999999987642  1 11 2334444566677899999999997432211       11111  4789999


Q ss_pred             EEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           81 YVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        81 ~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      +|++++... +.... .++..+..... ....|+++|+||+|+.+
T Consensus        80 ~v~d~~~~~s~~~~~-~~~~~~~~~~~-~~~~piilv~nK~Dl~~  122 (171)
T 1upt_A           80 YVVDSCDRDRIGISK-SELVAMLEEEE-LRKAILVVFANKQDMEQ  122 (171)
T ss_dssp             EEEETTCCTTHHHHH-HHHHHHHTCGG-GTTCEEEEEEECTTSTT
T ss_pred             EEEECCCHHHHHHHH-HHHHHHHhchh-hCCCEEEEEEECCCCcC
Confidence            998876532 32222 33333322211 02379999999999953

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.52  E-value=5.6e-14  Score=112.34  Aligned_cols=115  Identities=15%  Similarity=0.089  Sum_probs=72.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|+|++.... ....+..+.........+++  ..+.+|||||..+......   ..+      ..+|+
T Consensus        20 ~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~---~~~------~~~d~   89 (179)
T 2y8e_A           20 LGEQSVGKTSLITRFMYDSFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP---SYI------RDSTV   89 (179)
T ss_dssp             EESTTSSHHHHHHHHHHSCCC-SSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSH---HHH------HTCSE
T ss_pred             ECCCCCCHHHHHHHHHcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHH---HHh------cCCCE
Confidence            599999999999999987642 22222223334444555666  4789999999643322211   112      27899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR  127 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~  127 (265)
                      +++|++++..........++..+....+..  .|+++|+||+|+...+.
T Consensus        90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~  136 (179)
T 2y8e_A           90 AVVVYDITNTNSFHQTSKWIDDVRTERGSD--VIIMLVGNKTDLSDKRQ  136 (179)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTTS--SEEEEEEECGGGGGGCC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCcccccCc
Confidence            999988765321122345566666554433  78999999999864333

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.52  E-value=6.3e-14  Score=112.19  Aligned_cols=114  Identities=19%  Similarity=0.156  Sum_probs=70.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC---eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG---FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g---~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (265)
                      +|.+|||||||+|+|++.... ....+..+.........+++   ..+.+|||||.........       .++  ..+|
T Consensus        12 ~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~-------~~~--~~~d   81 (178)
T 2hxs_A           12 LGDGASGKTSLTTCFAQETFG-KQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLD-------KYI--YGAQ   81 (178)
T ss_dssp             ECCTTSSHHHHHHHHHGGGTT-HHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHH-------HHH--TTCS
T ss_pred             ECcCCCCHHHHHHHHHhCcCC-CCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhh-------HHH--hhCC
Confidence            599999999999999987632 11111222334445556665   6889999999754432211       122  3789


Q ss_pred             EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCc-EEEEEeCccCCC
Q 024586           78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR-ALIVLTHAQLSL  124 (265)
Q Consensus        78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~-~ivV~tk~D~~~  124 (265)
                      ++++|++++.......-..+++.+..........| +++|+||+|+.+
T Consensus        82 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~  129 (178)
T 2hxs_A           82 GVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEH  129 (178)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGG
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccc
Confidence            99999887652211122345555555332111144 899999999854

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.52  E-value=1.2e-13  Score=113.99  Aligned_cols=111  Identities=18%  Similarity=0.192  Sum_probs=73.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|+|++... .....+..+.........+++  ..+.+|||||..+.......   .+      ..+|+
T Consensus        26 ~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~---~~------~~~d~   95 (213)
T 3cph_A           26 IGDSGVGKSCLLVRFVEDKF-NPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTA---YY------RGAMG   95 (213)
T ss_dssp             ECSTTSSHHHHHHHHHHCCC-CCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHH---HH------TTCSE
T ss_pred             ECCCCCCHHHHHHHHHhCCC-CcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHH---Hh------ccCCE
Confidence            59999999999999998764 222223334444455666777  57899999997543322221   11      37899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +++|++++..........++..+.......  .|+++|+||+|+.
T Consensus        96 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~  138 (213)
T 3cph_A           96 IILVYDVTDERTFTNIKQWFKTVNEHANDE--AQLLLVGNKSDME  138 (213)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHTTTC--SEEEEEEECTTCS
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCc
Confidence            999988765321122245666666655433  7999999999993

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.51  E-value=7.9e-15  Score=136.60  Aligned_cols=114  Identities=22%  Similarity=0.215  Sum_probs=58.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH-hcCCccEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL-LNKTIDVL   79 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l-~~~~~d~i   79 (265)
                      +|.+|||||||+|+|++.+.+.++..+++|.........++|.++.+|||||+.+.....+..  .++... ....+|++
T Consensus       239 vG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~--gi~~~~~~~~~aD~v  316 (476)
T 3gee_A          239 AGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHE--GIRRSRMKMAEADLI  316 (476)
T ss_dssp             ECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC----------------------CCCSSCSEE
T ss_pred             ECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHH--HHHHHHhhcccCCEE
Confidence            699999999999999999877788888888888777888899999999999996643221111  012221 23589999


Q ss_pred             EEEEecCCcCCCH----HHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           80 LYVDRLDVYRVDN----LDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        80 L~V~~~d~~r~~~----~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      |+|++.+.. .+.    .+..+++.+    .   .+|+++|+||+|+.+
T Consensus       317 l~VvD~s~~-~s~~~~~~~~~~l~~l----~---~~piIvV~NK~Dl~~  357 (476)
T 3gee_A          317 LYLLDLGTE-RLDDELTEIRELKAAH----P---AAKFLTVANKLDRAA  357 (476)
T ss_dssp             EEEEETTTC-SSGGGHHHHHHHHHHC----T---TSEEEEEEECTTSCT
T ss_pred             EEEEECCCC-cchhhhHHHHHHHHhc----C---CCCEEEEEECcCCCC
Confidence            999877652 333    333333332    2   289999999999953

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.51  E-value=1.3e-13  Score=110.48  Aligned_cols=115  Identities=23%  Similarity=0.170  Sum_probs=73.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|+|++..  ..+...+++..........++.  .+.+|||||..+.......   .+.      .+|+
T Consensus        15 ~G~~~~GKssli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~---~~~------~~d~   83 (181)
T 2fn4_A           15 VGGGGVGKSALTIQFIQSY--FVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQ---YMR------AGHG   83 (181)
T ss_dssp             EECTTSSHHHHHHHHHHSS--CCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHH---HHH------HCSE
T ss_pred             ECCCCCCHHHHHHHHHhCc--CccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHH---HHh------hCCE
Confidence            5999999999999999875  3344444554444445566664  6789999998654332222   122      5799


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR  127 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~  127 (265)
                      +++|++++.......-..++..+.+.... ...|+++|+||+|+.....
T Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~  131 (181)
T 2fn4_A           84 FLLVFAINDRQSFNEVGKLFTQILRVKDR-DDFPVVLVGNKADLESQRQ  131 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHTS-SCCCEEEEEECGGGGGGCC
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccccc
Confidence            99998877532112223444455333321 1279999999999964333

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.51  E-value=1.2e-13  Score=113.73  Aligned_cols=116  Identities=17%  Similarity=0.102  Sum_probs=74.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|+|++.... ....+..+.........+++.  .+.+|||||..+.......       ++  ..+|+
T Consensus        14 ~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~-------~~--~~~d~   83 (206)
T 2bcg_Y           14 IGNSGVGKSCLLLRFSDDTYT-NDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSS-------YY--RGSHG   83 (206)
T ss_dssp             EESTTSSHHHHHHHHHHCCCC-TTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGG-------GG--TTCSE
T ss_pred             ECCCCCCHHHHHHHHhcCCCC-CCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHH-------hc--cCCCE
Confidence            599999999999999987642 222222333344445556664  7899999997654332221       11  47899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRL  128 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~  128 (265)
                      +++|++++..........++..+.......  .|+++|+||+|+......
T Consensus        84 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~  131 (206)
T 2bcg_Y           84 IIIVYDVTDQESFNGVKMWLQEIDRYATST--VLKLLVGNKCDLKDKRVV  131 (206)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECTTCTTTCCS
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCcccccc
Confidence            999988775321122334566666554333  789999999999644333

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.51  E-value=1.7e-14  Score=133.12  Aligned_cols=116  Identities=19%  Similarity=0.257  Sum_probs=70.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCC-cHHHHHHHHHHHhcCCccEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV-NYHAIQLIKRFLLNKTIDVL   79 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~-~~~~~~~i~~~l~~~~~d~i   79 (265)
                      +|.+|||||||+|+|+|...+.+++.+++|.+.......+++..+.+|||||+...... .+.+......++  .++|++
T Consensus         9 vG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~--~~ad~i   86 (436)
T 2hjg_A            9 VGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM--DEADVI   86 (436)
T ss_dssp             ECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHH--HHCSEE
T ss_pred             ECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHH--HhCCEE
Confidence            69999999999999999887777788888888888888889999999999998633211 112222222222  378999


Q ss_pred             EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      |+|++... ..+..+..+.+.+.+.     .+|+++|+||+|+.+
T Consensus        87 l~vvD~~~-~~~~~d~~~~~~l~~~-----~~pvilv~NK~D~~~  125 (436)
T 2hjg_A           87 IFMVNGRE-GVTAADEEVAKILYRT-----KKPVVLAVNKLDNTE  125 (436)
T ss_dssp             EEEEETTT-CSCHHHHHHHHHHTTC-----CSCEEEEEECCCC--
T ss_pred             EEEEeCCC-CCCHHHHHHHHHHHHc-----CCCEEEEEECccCcc
Confidence            99977653 4677777666666532     389999999999853

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.51  E-value=1.8e-13  Score=109.80  Aligned_cols=117  Identities=14%  Similarity=0.092  Sum_probs=72.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|+|++....... .+..+.........+.+  ..+.+|||||..+.....       ..++  ..+|+
T Consensus        18 ~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~--~~~d~   87 (181)
T 2efe_B           18 LGDVGAGKSSLVLRFVKDQFVEFQ-ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA-------PMYY--RGAAA   87 (181)
T ss_dssp             ECCTTSCHHHHHHHHHHCCCTTTS-CCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGT-------HHHH--TTCSE
T ss_pred             ECcCCCCHHHHHHHHHcCCCCCcC-CCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhh-------HHHh--ccCCE
Confidence            599999999999999987642221 12222222333444444  478999999964322111       1122  47899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD  129 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~  129 (265)
                      +++|++++..........++..+.......  .|+++|+||+|+.......
T Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~p~i~v~nK~Dl~~~~~~~  136 (181)
T 2efe_B           88 AIIVFDVTNQASFERAKKWVQELQAQGNPN--MVMALAGNKSDLLDARKVT  136 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECTTCTTTCCSC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCcccccccCC
Confidence            999988765322233446666666654332  7899999999996444433

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.51  E-value=2.6e-13  Score=106.66  Aligned_cols=112  Identities=21%  Similarity=0.130  Sum_probs=70.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|+|++...  .....+++..........++.  .+.+|||||..+...   .....+.      .+|+
T Consensus         9 ~G~~~~GKssl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~---~~~~~~~------~~~~   77 (166)
T 2ce2_X            9 VGAGGVGKSALTIQLIQNHF--VDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA---MRDQYMR------TGEG   77 (166)
T ss_dssp             EESTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCH---HHHHHHH------HCSE
T ss_pred             ECCCCCCHHHHHHHHHhCcC--ccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhH---HHHHhhc------cCCE
Confidence            59999999999999998763  222233333333344455554  578999999754321   1111222      5799


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      +++|++++.......-..+++.+...... ...|+++|+||+|+.+
T Consensus        78 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~-~~~p~iiv~nK~Dl~~  122 (166)
T 2ce2_X           78 FLCVFAINNTKSFEDIHQYREQIKRVKDS-DDVPMVLVGNKSDLAA  122 (166)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHTC-SCCCEEEEEECTTCSC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEchhhhh
Confidence            99998776432112224555666554431 1279999999999864

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.51  E-value=1.4e-13  Score=110.77  Aligned_cols=118  Identities=19%  Similarity=0.233  Sum_probs=74.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|+|++..  ......+++..........++  ..+.+|||||..+.......+         ...+|+
T Consensus        12 ~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~---------~~~~~~   80 (181)
T 3t5g_A           12 LGYRSVGKSSLTIQFVEGQ--FVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTY---------SIDING   80 (181)
T ss_dssp             EESTTSSHHHHHHHHHHSS--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGG---------TTTCSE
T ss_pred             ECcCCCCHHHHHHHHHcCC--CCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHH---------HhcCCE
Confidence            5999999999999999765  233444454444445556666  456899999986653322211         137899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCH
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY  130 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~  130 (265)
                      +++|++++.......-..++..+.+.... ...|+++|+||+|+......+.
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~  131 (181)
T 3t5g_A           81 YILVYSVTSIKSFEVIKVIHGKLLDMVGK-VQIPIMLVGNKKDLHMERVISY  131 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTTTCCSCH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccchhcceecH
Confidence            99998887532112223455555554432 1279999999999964444443

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.51  E-value=1.7e-13  Score=111.80  Aligned_cols=113  Identities=19%  Similarity=0.097  Sum_probs=68.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|+|++....  ....++...........++  ..+.+|||||..+..    .   ....++  ..+|+
T Consensus        14 vG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----~---~~~~~~--~~~d~   82 (199)
T 2gf0_A           14 FGAGGVGKSSLVLRFVKGTFR--DTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFP----A---MQRLSI--SKGHA   82 (199)
T ss_dssp             EECTTSSHHHHHHHHHHSCCC--CTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCH----H---HHHHHH--HHCSE
T ss_pred             ECCCCCcHHHHHHHHHcCCCC--CcccCccccceeEEEEECCEEEEEEEEeCCChHHhH----H---HHHHhh--ccCCE
Confidence            599999999999999987632  1122222222222333444  468999999974321    1   111222  25799


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      +++|++++..........++..+.+..+.....|+++|+||+|+.+
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~  128 (199)
T 2gf0_A           83 FILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ  128 (199)
T ss_dssp             EEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc
Confidence            9999887753211222345555655543222379999999999963

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.51  E-value=1.6e-13  Score=108.21  Aligned_cols=116  Identities=16%  Similarity=0.185  Sum_probs=71.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|+|++...  .....+++..........++.  .+.+|||||..+..       .....++  ..+|+
T Consensus        10 ~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~--~~~d~   78 (168)
T 1u8z_A           10 VGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA-------AIRDNYF--RSGEG   78 (168)
T ss_dssp             ECSTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CH-------HHHHHHH--HHCSE
T ss_pred             ECCCCCCHHHHHHHHHhCcc--CCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhH-------HHHHHHh--hcCCE
Confidence            59999999999999998763  233334444444444555654  68999999974321       1122222  26799


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRL  128 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~  128 (265)
                      +++|++++..........++..+.+.... ...|+++|+||+|+......
T Consensus        79 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~  127 (168)
T 1u8z_A           79 FLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQV  127 (168)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTSCEEEEEECGGGGGGCCS
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECccccccCcc
Confidence            99998877532112234555566555431 12799999999998543333

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.51  E-value=9.2e-14  Score=112.38  Aligned_cols=110  Identities=17%  Similarity=0.149  Sum_probs=69.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+|||||||+|++++...   .... .|.........+++..+.+|||||..+       .......+  ...+|+++
T Consensus        24 ~G~~~~GKssl~~~l~~~~~---~~~~-~t~~~~~~~~~~~~~~~~~~Dt~G~~~-------~~~~~~~~--~~~~d~ii   90 (186)
T 1ksh_A           24 LGLDNAGKTTILKKFNGEDV---DTIS-PTLGFNIKTLEHRGFKLNIWDVGGQKS-------LRSYWRNY--FESTDGLI   90 (186)
T ss_dssp             ECSTTSSHHHHHHHHTTCCC---SSCC-CCSSEEEEEEEETTEEEEEEEECCSHH-------HHTTGGGG--CTTCSEEE
T ss_pred             ECCCCCCHHHHHHHHhcCCC---Cccc-ccCccceEEEEECCEEEEEEECCCCHh-------HHHHHHHH--hcCCCEEE
Confidence            59999999999999998762   2222 233344456667889999999999732       11111111  25789999


Q ss_pred             EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      +|++++..........++..+.+... ....|+++|+||+|+..
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~  133 (186)
T 1ksh_A           91 WVVDSADRQRMQDCQRELQSLLVEER-LAGATLLIFANKQDLPG  133 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTT
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChh-cCCCcEEEEEeCccCCC
Confidence            99887653211222233433333211 11279999999999953

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.51  E-value=3.5e-13  Score=109.22  Aligned_cols=109  Identities=9%  Similarity=-0.005  Sum_probs=67.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+|||||||+|+|++.......+    |.........+++..+.+|||||..+......       .++  ..+|+++
T Consensus        22 ~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~~--~~~d~ii   88 (187)
T 1zj6_A           22 VGLDNAGKTTILYQFSMNEVVHTSP----TIGSNVEEIVINNTRFLMWDIGGQESLRSSWN-------TYY--TNTEFVI   88 (187)
T ss_dssp             EESTTSSHHHHHHHHHTTSCEEEEC----CSCSSCEEEEETTEEEEEEECCC----CGGGH-------HHH--TTCCEEE
T ss_pred             ECCCCCCHHHHHHHHhcCCCCcCcC----CCccceEEEEECCEEEEEEECCCCHhHHHHHH-------HHh--cCCCEEE
Confidence            5999999999999999876432221    22222345556789999999999854332221       111  3789999


Q ss_pred             EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|++++....-.....++..+.+... ....|+++|+||+|+.
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~  130 (187)
T 1zj6_A           89 VVVDSTDRERISVTREELYKMLAHED-LRKAGLLIFANKQDVK  130 (187)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGG-GTTCEEEEEEECTTST
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhchh-hCCCeEEEEEECCCCc
Confidence            99887653211222334444443211 1238999999999995

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.50  E-value=1.4e-13  Score=115.09  Aligned_cols=112  Identities=15%  Similarity=0.107  Sum_probs=69.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|+|++....... .+..+.........+++  ..+.+|||||..........       +  ...+|+
T Consensus        19 ~G~~~vGKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~-------~--~~~~d~   88 (223)
T 3cpj_B           19 IGDSGVGKSNLLSRFTKNEFNMDS-KSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSA-------Y--YRGAVG   88 (223)
T ss_dssp             ESCTTSSHHHHHHHHHHCCCCC-------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGG-------G--TTTCCE
T ss_pred             ECcCCCCHHHHHHHHhcCCCCCCC-CCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHH-------H--hccCCE
Confidence            699999999999999987642222 12223333344555666  57899999997554322211       1  147899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      +++|++++..........++..+.......  .|+++|+||+|+..
T Consensus        89 vilV~D~~~~~s~~~~~~~l~~i~~~~~~~--~piilv~nK~Dl~~  132 (223)
T 3cpj_B           89 ALIVYDISKSSSYENCNHWLSELRENADDN--VAVGLIGNKSDLAH  132 (223)
T ss_dssp             EEEEEC-CCHHHHHHHHHHHHHHHHHCC----CEEEEEECCGGGGG
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECccccc
Confidence            999987765321122335566666554332  78999999999954

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.50  E-value=2.1e-13  Score=108.20  Aligned_cols=118  Identities=16%  Similarity=0.074  Sum_probs=66.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCC-CcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGY-VNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~-~~~~~~~~i~~~l~~~~~d   77 (265)
                      +|.+|||||||+|+|++........ ...+.........+++.  .+.+|||||..+... ....   .+      ..+|
T Consensus         8 vG~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~---~~------~~~d   77 (169)
T 3q85_A            8 VGESGVGKSTLAGTFGGLQGDHAHE-MENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDH---CL------QTGD   77 (169)
T ss_dssp             ECSTTSSHHHHHHHHHCC-------------CEEEEEEEETTEEEEEEEECCCCC--------CH---HH------HHCS
T ss_pred             ECCCCCCHHHHHHHHHhccCccccc-CCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhh---hh------ccCC
Confidence            6999999999999999865422222 22334444455556664  578999999864321 1111   11      2579


Q ss_pred             EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCC
Q 024586           78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD  129 (265)
Q Consensus        78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~  129 (265)
                      ++++|++++.......-..++..+...... ...|+++|+||+|+......+
T Consensus        78 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~  128 (169)
T 3q85_A           78 AFLIVFSVTDRRSFSKVPETLLRLRAGRPH-HDLPVILVGNKSDLARSREVS  128 (169)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSTT-SCCCEEEEEECTTCGGGCCSC
T ss_pred             EEEEEEECCChHHHHHHHHHHHHHHhcccC-CCCCEEEEeeCcchhhcccCC
Confidence            999998887633222233455555554331 137999999999985433433

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.50  E-value=2.3e-14  Score=133.66  Aligned_cols=109  Identities=27%  Similarity=0.377  Sum_probs=83.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCC-CCCCCc-----HHHHHHHHHHHhcC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLI-EGGYVN-----YHAIQLIKRFLLNK   74 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~-~~~~~~-----~~~~~~i~~~l~~~   74 (265)
                      +|.+|||||||+|+|++.+.+.+++.+++|.........++|.++.+|||||+. ++....     ......+.      
T Consensus       249 vG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~------  322 (482)
T 1xzp_A          249 VGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIE------  322 (482)
T ss_dssp             ECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHH------
T ss_pred             ECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhh------
Confidence            699999999999999998876788888889888888888899999999999997 543221     22333444      


Q ss_pred             CccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           75 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        75 ~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      .+|++|+|++.+. ..+..+.++++.+    .   .+|+++|+||+|+.
T Consensus       323 ~aD~vl~VvD~s~-~~s~~~~~il~~l----~---~~piivV~NK~DL~  363 (482)
T 1xzp_A          323 KADIVLFVLDASS-PLDEEDRKILERI----K---NKRYLVVINKVDVV  363 (482)
T ss_dssp             HCSEEEEEEETTS-CCCHHHHHHHHHH----T---TSSEEEEEEECSSC
T ss_pred             cccEEEEEecCCC-CCCHHHHHHHHHh----c---CCCEEEEEECcccc
Confidence            6799999987654 3455555555443    1   27999999999995

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.50  E-value=3.2e-13  Score=121.35  Aligned_cols=117  Identities=17%  Similarity=0.223  Sum_probs=80.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCc--HHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN--YHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~--~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|+|+|... .++..+.+|...........+..+.++||||+.+.....  .-....+..  ....+|+
T Consensus       173 vG~~gvGKSTLin~L~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~--~~~~ad~  249 (357)
T 2e87_A          173 AGHPNVGKSTLLKALTTAKP-EIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILA--LRYLGNL  249 (357)
T ss_dssp             ECSTTSSHHHHHHHHCSSCC-EEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHG--GGGTCSE
T ss_pred             ECCCCCCHHHHHHHHhCCCC-ccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHH--HHhcCCE
Confidence            69999999999999999873 455556677766666666778899999999997643221  111112211  1236899


Q ss_pred             EEEEEecCCcC-CC-HHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYR-VD-NLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r-~~-~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|+|++++... ++ .....++..+...++   ..|+++|+||+|+.
T Consensus       250 illV~D~s~~~~~~~~~~~~~~~~i~~~~~---~~piilV~NK~Dl~  293 (357)
T 2e87_A          250 IIYIFDPSEHCGFPLEEQIHLFEEVHGEFK---DLPFLVVINKIDVA  293 (357)
T ss_dssp             EEEEECTTCTTSSCHHHHHHHHHHHHHHTT---TSCEEEEECCTTTC
T ss_pred             EEEEEeCCccccCCHHHHHHHHHHHHHhcC---CCCEEEEEECcccC
Confidence            99997655422 23 334567777777664   28999999999984

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.50  E-value=1.9e-13  Score=111.45  Aligned_cols=111  Identities=11%  Similarity=0.089  Sum_probs=69.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+|||||||+|+|++.....+. +. .|...........+..+.+|||||..+....       ...++  ..+|+++
T Consensus        23 ~G~~~~GKSsl~~~l~~~~~~~~~-~~-~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~~~--~~~d~ii   91 (199)
T 4bas_A           23 CGLDNSGKTTIINQVKPAQSSSKH-IT-ATVGYNVETFEKGRVAFTVFDMGGAKKFRGL-------WETYY--DNIDAVI   91 (199)
T ss_dssp             ECCTTSCHHHHHHHHSCCC----C-CC-CCSSEEEEEEEETTEEEEEEEECCSGGGGGG-------GGGGC--TTCSEEE
T ss_pred             ECCCCCCHHHHHHHHhcCCCcccc-cc-cccceeEEEEEeCCEEEEEEECCCCHhHHHH-------HHHHH--hcCCEEE
Confidence            699999999999999998753322 22 2333444455677889999999998432211       11111  4889999


Q ss_pred             EEEecCCcC-CCHHHHHHHHHHHHhcC------cCcCCcEEEEEeCccCC
Q 024586           81 YVDRLDVYR-VDNLDKQITRAITDNFG------EQIWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~~r-~~~~d~~~l~~l~~~~g------~~~~~~~ivV~tk~D~~  123 (265)
                      +|++++... +... ..++..+.+...      .....|+++|+||+|+.
T Consensus        92 ~v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~  140 (199)
T 4bas_A           92 FVVDSSDHLRLCVV-KSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAA  140 (199)
T ss_dssp             EEEETTCGGGHHHH-HHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTST
T ss_pred             EEEECCcHHHHHHH-HHHHHHHHhChhhhhcccccCCCCEEEEEECcCCC
Confidence            998877532 2222 234443333211      00138999999999995

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.50  E-value=1.2e-13  Score=123.39  Aligned_cols=116  Identities=17%  Similarity=0.217  Sum_probs=81.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC-eEEEEEeCCCCCCCCC----CcHHHHHHHHHHHhcCC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-FTLNIVDTPGLIEGGY----VNYHAIQLIKRFLLNKT   75 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g-~~v~iiDTPG~~~~~~----~~~~~~~~i~~~l~~~~   75 (265)
                      +|.+|||||||+|+|++... .++.++.+|..+......+.+ ..+.++||||+.+...    ....+++.+.      .
T Consensus       164 vG~~nvGKSTLln~L~~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~------~  236 (342)
T 1lnz_A          164 VGFPSVGKSTLLSVVSSAKP-KIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIE------R  236 (342)
T ss_dssp             ESSTTSSHHHHHHHSEEECC-EESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHH------H
T ss_pred             eCCCCCCHHHHHHHHHcCCC-ccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHH------h
Confidence            69999999999999999875 456677778777777777775 8999999999754221    2234555444      5


Q ss_pred             ccEEEEEEecCC---cCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           76 IDVLLYVDRLDV---YRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        76 ~d~iL~V~~~d~---~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|++|+|++++.   .........+++.+......-..+|+++|+||+|+.
T Consensus       237 ~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~  287 (342)
T 1lnz_A          237 TRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMP  287 (342)
T ss_dssp             CCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTST
T ss_pred             ccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCC
Confidence            799999987764   221122334556666543222348999999999984

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.49  E-value=1.1e-13  Score=121.61  Aligned_cols=110  Identities=17%  Similarity=0.288  Sum_probs=80.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH------hcC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL------LNK   74 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l------~~~   74 (265)
                      +|.+|+|||||+|+|+|...+.++..+++|..........++.++.++||||+..      .....+...+      ...
T Consensus        14 vG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~------~~~~~l~~~~~~~~~~~l~   87 (301)
T 1ega_A           14 VGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHM------EEKRAINRLMNKAASSSIG   87 (301)
T ss_dssp             ECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCH------HHHHHHHHHHTCCTTSCCC
T ss_pred             ECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCc------cchhhHHHHHHHHHHHHHh
Confidence            6999999999999999998766676666777666666677888999999999851      0111111111      125


Q ss_pred             CccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           75 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        75 ~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      .+|++++|++.+.  ++..+..+++.+...     ..|+++|+||+|+.
T Consensus        88 ~~D~vl~Vvd~~~--~~~~~~~i~~~l~~~-----~~P~ilvlNK~D~~  129 (301)
T 1ega_A           88 DVELVIFVVEGTR--WTPDDEMVLNKLREG-----KAPVILAVNKVDNV  129 (301)
T ss_dssp             CEEEEEEEEETTC--CCHHHHHHHHHHHSS-----SSCEEEEEESTTTC
T ss_pred             cCCEEEEEEeCCC--CCHHHHHHHHHHHhc-----CCCEEEEEECcccC
Confidence            7899999977653  778887777666532     28999999999984

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.49  E-value=3.1e-13  Score=106.49  Aligned_cols=115  Identities=17%  Similarity=0.096  Sum_probs=70.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|++++....  ....+++..........++.  .+.+|||||..+..    ..   ...++  ..+|+
T Consensus         9 ~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~----~~---~~~~~--~~~~~   77 (167)
T 1kao_A            9 LGSGGVGKSALTVQFVTGTFI--EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA----SM---RDLYI--KNGQG   77 (167)
T ss_dssp             ECCTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH----HH---HHHHH--HHCSE
T ss_pred             ECCCCCCHHHHHHHHHcCCCc--ccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhH----HH---HHHHh--ccCCE
Confidence            699999999999999987632  22333333333445556655  48899999975321    11   11122  26699


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR  127 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~  127 (265)
                      +++|++++.......-..++..+.+.... ...|+++|+||+|+.+...
T Consensus        78 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~  125 (167)
T 1kao_A           78 FILVYSLVNQQSFQDIKPMRDQIIRVKRY-EKVPVILVGNKVDLESERE  125 (167)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECGGGGGGCC
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECCccccccc
Confidence            99998776522112233445555544321 2379999999999854333

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.49  E-value=1.3e-13  Score=109.04  Aligned_cols=113  Identities=14%  Similarity=0.113  Sum_probs=70.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|+|++..... ...+..+.........+++  ..+.+|||||..+...       ....++  ..+|+
T Consensus         9 ~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-------~~~~~~--~~~d~   78 (170)
T 1ek0_A            9 LGEAAVGKSSIVLRFVSNDFAE-NKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFAS-------LAPXYY--RNAQA   78 (170)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCCT-TCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGG-------GHHHHH--TTCSE
T ss_pred             ECCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhh-------hhhhhh--ccCcE
Confidence            5999999999999999876421 1112122222233444554  4789999999643211       112222  47899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP  125 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~  125 (265)
                      +++|++++..........++..+.+....+  .|+++|+||+|+.+.
T Consensus        79 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~  123 (170)
T 1ek0_A           79 ALVVYDVTKPQSFIKARHWVKELHEQASKD--IIIALVGNKIDXLQE  123 (170)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGGS
T ss_pred             EEEEEecCChHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCCcccc
Confidence            999988775322223334566666554333  789999999998643

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.49  E-value=2.3e-13  Score=107.46  Aligned_cols=108  Identities=12%  Similarity=0.098  Sum_probs=68.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+|||||||+|++++....  .. . .|...........+..+.+|||||..+.       ......++  .++|+++
T Consensus         6 ~G~~~~GKssl~~~l~~~~~~--~~-~-~t~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~--~~~d~~i   72 (164)
T 1r8s_A            6 VGLDAAGKTTILYKLKLGEIV--TT-I-PTIGFNVETVEYKNISFTVWDVGGQDKI-------RPLWRHYF--QNTQGLI   72 (164)
T ss_dssp             ECSTTSSHHHHHHHHHHHCSS--CC-C-CCSSCCEEEEECSSCEEEEEECCCCGGG-------HHHHHHHT--TTCSEEE
T ss_pred             ECCCCCCHHHHHHHHHcCCcC--cc-c-CcCceeEEEEEECCEEEEEEEcCCChhh-------HHHHHHHh--ccCCEEE
Confidence            699999999999999987632  21 1 2333334455667889999999998421       11222222  4889999


Q ss_pred             EEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           81 YVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|++++... +.. ...++..+..... ....|+++|+||+|+.
T Consensus        73 ~v~d~~~~~s~~~-~~~~~~~~~~~~~-~~~~piilv~nK~Dl~  114 (164)
T 1r8s_A           73 FVVDSNDRERVNE-AREELMRMLAEDE-LRDAVLLVFANKQDLP  114 (164)
T ss_dssp             EEEETTCGGGHHH-HHHHHHHHHTCGG-GTTCEEEEEEECTTST
T ss_pred             EEEECCCHHHHHH-HHHHHHHHHhchh-hcCCeEEEEEECcCCc
Confidence            998876532 222 2233333332211 1127999999999994

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.49  E-value=1.5e-13  Score=112.65  Aligned_cols=117  Identities=16%  Similarity=0.183  Sum_probs=74.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|+|++...  .....+++.........+++.  .+.+|||||..+..    .   ....++  ..+|+
T Consensus        20 ~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----~---~~~~~~--~~~~~   88 (206)
T 2bov_A           20 VGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA----A---IRDNYF--RSGEG   88 (206)
T ss_dssp             ECSTTSSHHHHHHHHHHSCC--CTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH----H---HHHHHH--HHCSE
T ss_pred             ECCCCCCHHHHHHHHHhCCC--CCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhH----H---HHHHHH--hhCCE
Confidence            59999999999999998763  333444444444445556664  68999999975432    1   112222  26799


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD  129 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~  129 (265)
                      +++|++++..........++..+...... ...|+++|+||+|+......+
T Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~  138 (206)
T 2bov_A           89 FLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQVS  138 (206)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHTTC-SCCCEEEEEECTTCGGGCCSC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEeccCcccccccc
Confidence            99998877532112234555666555431 137999999999996433333

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.49  E-value=2e-13  Score=112.46  Aligned_cols=117  Identities=15%  Similarity=0.114  Sum_probs=71.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|+|++..... ...+..+.........+++  ..+.+|||||..+.       ......++  ..+|+
T Consensus        35 vG~~~vGKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~--~~~d~  104 (201)
T 2hup_A           35 VGDASVGKTCVVQRFKTGAFSE-RQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERF-------RTITQSYY--RSANG  104 (201)
T ss_dssp             EECTTSSHHHHHHHHHHSCC-----------CEEEEEEEETTEEEEEEEECCTTCGGG-------HHHHHHHH--TTCSE
T ss_pred             ECcCCCCHHHHHHHHhhCCCCC-CCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhH-------HHHHHHHH--hhCCE
Confidence            5999999999999999876321 1111112233344555666  47899999997321       11222232  47899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD  129 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~  129 (265)
                      +++|++++.......-..+++.+.+.....  .|+++|+||+|+...+..+
T Consensus       105 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~~~~~v~  153 (201)
T 2hup_A          105 AILAYDITKRSSFLSVPHWIEDVRKYAGSN--IVQLLIGNKSDLSELREVS  153 (201)
T ss_dssp             EEEEEETTBHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCccccccccC
Confidence            999988765221122235666666654333  7899999999995433333

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.49  E-value=1.2e-13  Score=112.01  Aligned_cols=108  Identities=16%  Similarity=0.078  Sum_probs=69.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+|+|||||+|+|++......  .  .|..........++..+.+|||||..+.......       +  ...+|+++
T Consensus        28 ~G~~~~GKssli~~l~~~~~~~~--~--~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~-------~--~~~~d~ii   94 (189)
T 2x77_A           28 LGLDNAGKTSILYRLHLGDVVTT--V--PTVGVNLETLQYKNISFEVWDLGGQTGVRPYWRC-------Y--FSDTDAVI   94 (189)
T ss_dssp             EEETTSSHHHHHHHTCCSCCEEE--C--SSTTCCEEEEEETTEEEEEEEECCSSSSCCCCSS-------S--STTCCEEE
T ss_pred             ECCCCCCHHHHHHHHHcCCCCCc--C--CCCceEEEEEEECCEEEEEEECCCCHhHHHHHHH-------H--hhcCCEEE
Confidence            58999999999999998764221  1  2333344456677899999999998654322211       1  13789999


Q ss_pred             EEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           81 YVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|++++... +... ..++..+..... ....|+++|+||+|+.
T Consensus        95 ~v~d~~~~~s~~~~-~~~~~~~~~~~~-~~~~piilv~nK~Dl~  136 (189)
T 2x77_A           95 YVVDSTDRDRMGVA-KHELYALLDEDE-LRKSLLLIFANKQDLP  136 (189)
T ss_dssp             EEEETTCCTTHHHH-HHHHHHHHTCST-TTTCEEEEEEECTTST
T ss_pred             EEEeCCCHHHHHHH-HHHHHHHHhhhh-cCCCeEEEEEECCCCc
Confidence            998876532 2222 233333322111 1237999999999995

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.49  E-value=1.4e-13  Score=112.23  Aligned_cols=110  Identities=16%  Similarity=0.151  Sum_probs=71.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|+|++...  .....+++..........++.  .+.+|||||..+.....       ..+  ...+|+
T Consensus        29 vG~~~~GKSsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~--~~~~d~   97 (194)
T 3reg_A           29 VGDGAVGKTCLLLAFSKGEI--PTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLR-------PLS--YADSDV   97 (194)
T ss_dssp             ECSTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTG-------GGG--CTTCSE
T ss_pred             ECcCCCCHHHHHHHHhcCCC--CCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHh-------Hhh--ccCCcE
Confidence            69999999999999999873  233333433333344455554  45999999964322111       111  147899


Q ss_pred             EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      +++|++++... +......++..+......   .|+++|+||+|+..
T Consensus        98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~p~ilv~nK~Dl~~  141 (194)
T 3reg_A           98 VLLCFAVNNRTSFDNISTKWEPEIKHYIDT---AKTVLVGLKVDLRK  141 (194)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCTT---SEEEEEEECGGGCC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCCC---CCEEEEEEChhhcc
Confidence            99998877532 222234566666655432   79999999999963

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.49  E-value=1.9e-13  Score=111.26  Aligned_cols=112  Identities=16%  Similarity=0.100  Sum_probs=71.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|+|++....... .+..+..........++  ..+.+|||||..+.......       ++  ..+|+
T Consensus        27 ~G~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~-------~~--~~~d~   96 (191)
T 2a5j_A           27 IGDTGVGKSCLLLQFTDKRFQPVH-DLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRS-------YY--RGAAG   96 (191)
T ss_dssp             ESSTTSSHHHHHHHHHHSCCCC------CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHH-------HH--TTCSE
T ss_pred             ECcCCCCHHHHHHHHhcCCCCCCC-CCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHH-------Hh--ccCCE
Confidence            599999999999999987642222 12223333344555666  47899999997544332221       11  37899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      +++|++++.......-..++..+.......  .|+++|+||+|+..
T Consensus        97 ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~--~piilv~nK~Dl~~  140 (191)
T 2a5j_A           97 ALLVYDITRRETFNHLTSWLEDARQHSSSN--MVIMLIGNKSDLES  140 (191)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGG
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccCC
Confidence            999988765321122235666666554333  78999999999954

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.49  E-value=1.6e-14  Score=134.13  Aligned_cols=114  Identities=19%  Similarity=0.227  Sum_probs=75.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH-hcCCccEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL-LNKTIDVL   79 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l-~~~~~d~i   79 (265)
                      +|.+|+|||||+|+|++.+.+.++..+++|.........++|.++.+|||||+.+.....+..  .+++.. ....+|++
T Consensus       230 vG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~--gi~~~~~~~~~aD~v  307 (462)
T 3geh_A          230 VGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKI--GVERSRQAANTADLV  307 (462)
T ss_dssp             EECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC----------------------CCCCSCSEE
T ss_pred             EcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHH--HHHHHhhhhhcCCEE
Confidence            599999999999999998766677777787777666777899999999999996543221111  112222 23578999


Q ss_pred             EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      |+|++.+. ..+..+..+++.+..       +|+++|+||+|+.+
T Consensus       308 l~VvD~s~-~~~~~~~~i~~~l~~-------~piivV~NK~Dl~~  344 (462)
T 3geh_A          308 LLTIDAAT-GWTTGDQEIYEQVKH-------RPLILVMNKIDLVE  344 (462)
T ss_dssp             EEEEETTT-CSCHHHHHHHHHHTT-------SCEEEEEECTTSSC
T ss_pred             EEEeccCC-CCCHHHHHHHHhccC-------CcEEEEEECCCCCc
Confidence            99987764 466666666665532       69999999999853

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.48  E-value=6.4e-13  Score=106.16  Aligned_cols=113  Identities=22%  Similarity=0.164  Sum_probs=69.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|+|++.... ....+..+.........+++.  .+.+|||||..+.       ......++  ..+|+
T Consensus        13 ~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~--~~~~~   82 (177)
T 1wms_A           13 LGDGGVGKSSLMNRYVTNKFD-TQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF-------RSLRTPFY--RGSDC   82 (177)
T ss_dssp             ECCTTSSHHHHHHHHHHSCCC-C----CCSEEEEEEEEEETTEEEEEEEEECCCCGGG-------HHHHGGGG--TTCSE
T ss_pred             ECCCCCCHHHHHHHHHcCCCC-CCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhh-------hhhHHHHH--hcCCE
Confidence            699999999999999987632 121222222333345556664  7899999996321       11222222  47899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCc--CcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGE--QIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~--~~~~~~ivV~tk~D~~  123 (265)
                      +++|++++.......-..+++.+......  ....|+++|+||+|+.
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~  129 (177)
T 1wms_A           83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS  129 (177)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc
Confidence            99998877532112224556666555431  1237999999999985

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.48  E-value=1.3e-13  Score=119.19  Aligned_cols=114  Identities=18%  Similarity=0.222  Sum_probs=82.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+|+|||||+|+|+|... .++..+++|.........+.+..+.+|||||+.+......+. ...+.++....+|+++
T Consensus         9 vG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~-~~~~~~~~~~~~d~vi   86 (271)
T 3k53_A            9 VGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDE-LIARNFILDGNADVIV   86 (271)
T ss_dssp             EECSSSSHHHHHHHHHTTCE-EEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHH-HHHHHHHHTTCCSEEE
T ss_pred             ECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHH-HHHHHhhhccCCcEEE
Confidence            59999999999999999875 677777788877777888899999999999998654332211 1234455557899999


Q ss_pred             EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|++...  . .....+...+.+.. .   .|+++|+||+|+.
T Consensus        87 ~v~D~~~--~-~~~~~~~~~~~~~~-~---~p~ilv~NK~Dl~  122 (271)
T 3k53_A           87 DIVDSTC--L-MRNLFLTLELFEME-V---KNIILVLNKFDLL  122 (271)
T ss_dssp             EEEEGGG--H-HHHHHHHHHHHHTT-C---CSEEEEEECHHHH
T ss_pred             EEecCCc--c-hhhHHHHHHHHhcC-C---CCEEEEEEChhcC
Confidence            9966553  2 22333344443321 1   7899999999974

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.48  E-value=8.7e-14  Score=110.93  Aligned_cols=119  Identities=15%  Similarity=0.064  Sum_probs=66.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|+|++..........+.  ........+++.  .+.+|||||......      ..+... ....+|+
T Consensus        10 ~G~~~vGKSsl~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~-~~~~~~~   80 (175)
T 2nzj_A           10 LGDPGVGKTSLASLFAGKQERDLHEQLGE--DVYERTLTVDGEDTTLVVVDTWEAEKLDK------SWSQES-CLQGGSA   80 (175)
T ss_dssp             ECCTTSSHHHHHHHHHCC-----CCCSSS--SEEEEEEEETTEEEEEEEECCC-------------CHHHHH-TTTSCSE
T ss_pred             ECCCCccHHHHHHHHhcCCCccccCcccc--ceeEEEEEECCEEEEEEEEecCCCCccch------hhhHHh-hcccCCE
Confidence            69999999999999999875433332222  223344556664  678999999854210      111111 1246899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD  129 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~  129 (265)
                      +++|+++++.........++..+.+... ....|+++|+||+|+.+....+
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~~piilv~NK~Dl~~~~~v~  130 (175)
T 2nzj_A           81 YVIVYSIADRGSFESASELRIQLRRTHQ-ADHVPIILVGNKADLARCREVS  130 (175)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTTTCCSC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhc-cCCCCEEEEEEChhhccccccC
Confidence            9999888753211222345555554321 1137999999999996444443

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.48  E-value=7.4e-14  Score=110.52  Aligned_cols=116  Identities=14%  Similarity=0.034  Sum_probs=60.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|+|++......+...+++.   ......++  ..+.+|||||.........       .++  ..+|+
T Consensus         8 vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~D~~g~~~~~~~~~-------~~~--~~~~~   75 (166)
T 3q72_A            8 LGAPGVGKSALARIFGGVEDGPEAEAAGHTY---DRSIVVDGEEASLMVYDIWEQDGGRWLPG-------HCM--AMGDA   75 (166)
T ss_dssp             EESTTSSHHHHHHHHCCC----------CEE---EEEEEETTEEEEEEEEECC------------------------CCE
T ss_pred             ECCCCCCHHHHHHHHcCccccCCCCccccce---EEEEEECCEEEEEEEEECCCCccchhhhh-------hhh--hhCCE
Confidence            5999999999999999877544433333222   22334444  4678999999754322111       111  37899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD  129 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~  129 (265)
                      +++|+++++.........++..+.+... ....|+++|+||+|+.+....+
T Consensus        76 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~  125 (166)
T 3q72_A           76 YVIVYSVTDKGSFEKASELRVQLRRARQ-TDDVPIILVGNKSDLVRSREVS  125 (166)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCSSCCSC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccccccccccC
Confidence            9999888753321223344555544321 1237999999999996544433

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.48  E-value=4.9e-13  Score=109.30  Aligned_cols=108  Identities=11%  Similarity=0.053  Sum_probs=65.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+|||||||+|+|++.....  ..  .|...........+..+.+|||||..+......   ..+      ..+|+++
T Consensus        35 ~G~~~vGKSsLi~~l~~~~~~~--~~--~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~---~~~------~~~d~ii  101 (192)
T 2b6h_A           35 VGLDAAGKTTILYKLKLGEIVT--TI--PTIGFNVETVEYKNICFTVWDVGGQDKIRPLWR---HYF------QNTQGLI  101 (192)
T ss_dssp             EESTTSSHHHHHHHHCSSCCEE--EE--EETTEEEEEEEETTEEEEEEECC-----CTTHH---HHH------HTCCEEE
T ss_pred             ECCCCCCHHHHHHHHHhCCccc--cC--CcCceeEEEEEECCEEEEEEECCCCHhHHHHHH---HHh------ccCCEEE
Confidence            5999999999999999876422  11  233334445667889999999999854332211   122      2789999


Q ss_pred             EEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           81 YVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|++++... +.. ...++..+.+... ....|+++|+||+|+.
T Consensus       102 lv~D~~~~~s~~~-~~~~l~~~~~~~~-~~~~piilv~NK~Dl~  143 (192)
T 2b6h_A          102 FVVDSNDRERVQE-SADELQKMLQEDE-LRDAVLLVFANKQDMP  143 (192)
T ss_dssp             EEEETTCGGGHHH-HHHHHHHHHTCGG-GTTCEEEEEEECTTST
T ss_pred             EEEECCCHHHHHH-HHHHHHHHhcccc-cCCCeEEEEEECCCCC
Confidence            998876532 222 2233333332111 1137999999999994

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.48  E-value=1.7e-13  Score=111.88  Aligned_cols=115  Identities=16%  Similarity=0.156  Sum_probs=68.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|+|++...... ..+..+.........+++  ..+.+|||||..+.       ......++  ..+|+
T Consensus        32 vG~~~~GKSsLi~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-------~~~~~~~~--~~~d~  101 (192)
T 2il1_A           32 IGSRGVGKTSLMERFTDDTFCEA-CKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF-------NSITSAYY--RSAKG  101 (192)
T ss_dssp             ECSTTSSHHHHHHHHCC---------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGG-------HHHHHHHH--HHCSE
T ss_pred             ECCCCCCHHHHHHHHhcCCCCcC-CCCccceeEEEEEEEECCeEEEEEEEeCCCcHHH-------HHHHHHHh--cCCCE
Confidence            59999999999999999764221 112222333344455666  46899999996321       11122222  26799


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR  127 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~  127 (265)
                      +++|++++.......-..+++.+.......  .|+++|+||+|+.....
T Consensus       102 iilV~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilV~NK~Dl~~~~~  148 (192)
T 2il1_A          102 IILVYDITKKETFDDLPKWMKMIDKYASED--AELLLVGNKLDCETDRE  148 (192)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCC
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECcccccccc
Confidence            999988775321122234556666554333  78999999999854333

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.48  E-value=2.2e-13  Score=107.63  Aligned_cols=113  Identities=17%  Similarity=0.085  Sum_probs=69.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA--GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~--g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|+|++...  .....+++..........+  +..+.+|||||..+....   ....++      .+|+
T Consensus         9 ~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~---~~~~~~------~~d~   77 (167)
T 1c1y_A            9 LGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAM---RDLYMK------NGQG   77 (167)
T ss_dssp             ECSTTSSHHHHHHHHHHCCC--CCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTH---HHHHHH------HCSE
T ss_pred             ECCCCCCHHHHHHHHHcCCC--CCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHH---HHHHhc------cCCE
Confidence            59999999999999998753  2222333332223333444  346899999997543321   111222      5799


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP  125 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~  125 (265)
                      +++|++++.......-..+++.+.+.... ...|+++|+||+|+...
T Consensus        78 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~  123 (167)
T 1c1y_A           78 FALVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCDLEDE  123 (167)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCC-SCCCEEEEEECTTCGGG
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhCc-CCCcEEEEEECcccccc
Confidence            99998877532112223455555554321 23799999999999543

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.47  E-value=2.9e-13  Score=109.49  Aligned_cols=113  Identities=17%  Similarity=0.268  Sum_probs=76.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+|||||||+|+|++... .++..+++|..........++..+.+|||||..+...... .......++....+|+++
T Consensus        13 vG~~gvGKStL~~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-~~~~~~~~~~~~~~~~~i   90 (188)
T 2wjg_A           13 IGNPNVGKSTIFNALTGENV-YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSI-DEIIARDYIINEKPDLVV   90 (188)
T ss_dssp             ECSTTSSHHHHHHHHHTTCE-EEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSH-HHHHHHHHHHHHCCSEEE
T ss_pred             ECCCCCCHHHHHHHHhCCCc-cccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccH-HHHHHHHHHhccCCCEEE
Confidence            69999999999999999764 4555566666666677778899999999999876432211 111122233323689999


Q ss_pred             EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|++...  + .....++..+.+.     ..|+++|+||+|+.
T Consensus        91 ~v~d~~~--~-~~~~~~~~~~~~~-----~~piilv~nK~Dl~  125 (188)
T 2wjg_A           91 NIVDATA--L-ERNLYLTLQLMEM-----GANLLLALNKMDLA  125 (188)
T ss_dssp             EEEEGGG--H-HHHHHHHHHHHTT-----TCCEEEEEECHHHH
T ss_pred             EEecchh--H-HHHHHHHHHHHhc-----CCCEEEEEEhhhcc
Confidence            9966542  2 2333444444432     27899999999984

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.47  E-value=8.8e-14  Score=110.11  Aligned_cols=112  Identities=15%  Similarity=0.106  Sum_probs=68.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA--GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~--g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|+|++........ +..+..........+  +..+.+|||||..+...       ....++  ..+|+
T Consensus        12 ~G~~~~GKssli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-------~~~~~~--~~~d~   81 (170)
T 1r2q_A           12 LGESAVGKSSLVLRFVKGQFHEFQE-STIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHS-------LAPMYY--RGAQA   81 (170)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCCTTCC-CCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGG-------GHHHHH--TTCSE
T ss_pred             ECCCCCCHHHHHHHHHcCCCCCCCC-CccceEEEEEEEEECCEEEEEEEEeCCCcHHhhh-------hhHHhc--cCCCE
Confidence            5999999999999999876422111 111111112233333  45789999999743211       111222  47899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      +++|++++..........++..+.+...+.  .|+++|+||+|+.+
T Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilv~nK~Dl~~  125 (170)
T 1r2q_A           82 AIVVYDITNEESFARAKNWVKELQRQASPN--IVIALSGNKADLAN  125 (170)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGG
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccCcc
Confidence            999988765321122335556666554433  78999999999854

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.47  E-value=2.9e-13  Score=109.92  Aligned_cols=114  Identities=14%  Similarity=0.096  Sum_probs=70.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA--GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~--g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|+|++...... ..+..+...........  +..+.+|||||..+......       .++  ..+|+
T Consensus        28 vG~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-------~~~--~~~d~   97 (189)
T 2gf9_A           28 IGNSSVGKTSFLFRYADDSFTPA-FVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITT-------AYY--RGAMG   97 (189)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCCCS-CCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGG-------GGG--TTCSE
T ss_pred             ECCCCCCHHHHHHHHHcCCCCCC-cCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHH-------Hhc--cCCCE
Confidence            69999999999999998764221 11112222222333344  35789999999765432221       111  47899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD  126 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~  126 (265)
                      +++|++++..........++..+.+.....  .|+++|+||+|+....
T Consensus        98 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~  143 (189)
T 2gf9_A           98 FLLMYDIANQESFAAVQDWATQIKTYSWDN--AQVILVGNKCDLEDER  143 (189)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECccccccc
Confidence            999988765321222345666666654222  7999999999995433

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.47  E-value=7.1e-13  Score=107.70  Aligned_cols=110  Identities=15%  Similarity=0.112  Sum_probs=68.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+|+|||||+|+|++....  .... .|...........+..+.+|||||..+       .......++  ..+|+++
T Consensus        28 ~G~~~~GKSsli~~l~~~~~~--~~~~-~t~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~--~~~d~ii   95 (188)
T 1zd9_A           28 VGLQYSGKTTFVNVIASGQFN--EDMI-PTVGFNMRKITKGNVTIKLWDIGGQPR-------FRSMWERYC--RGVSAIV   95 (188)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCC--CSCC-CCCSEEEEEEEETTEEEEEEEECCSHH-------HHTTHHHHH--TTCSEEE
T ss_pred             ECCCCCCHHHHHHHHHcCCCC--CccC-CCCceeEEEEEeCCEEEEEEECCCCHh-------HHHHHHHHH--ccCCEEE
Confidence            699999999999999987642  1112 233333344567788999999999632       222222232  4789999


Q ss_pred             EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|++++..........++..+.+... ....|+++|+||+|+.
T Consensus        96 ~v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~  137 (188)
T 1zd9_A           96 YMVDAADQEKIEASKNELHNLLDKPQ-LQGIPVLVLGNKRDLP  137 (188)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGG-GTTCCEEEEEECTTST
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhCcc-cCCCCEEEEEECCCCc
Confidence            99887653211222233333332211 1237999999999995

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.47  E-value=2.7e-13  Score=117.52  Aligned_cols=112  Identities=19%  Similarity=0.226  Sum_probs=78.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+|||||||+|+|+|... .++..+++|.......... +..+.+|||||..+......+ ....+.++....+|+++
T Consensus         9 vG~~nvGKSTL~n~L~g~~~-~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~-e~v~~~~~~~~~~d~vi   85 (272)
T 3b1v_A            9 IGNPNSGKTSLFNLITGHNQ-RVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPE-AKVARDYLLSQRADSIL   85 (272)
T ss_dssp             ECCTTSSHHHHHHHHHCCCC-CCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHH-HHHHHHHHHTTCCSEEE
T ss_pred             ECCCCCCHHHHHHHHHCCCC-cccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChH-HHHHHHHHhcCCCCEEE
Confidence            69999999999999999864 5777777787766666555 778999999998764322211 11223344445799999


Q ss_pred             EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|++.+.  . .....+...+.+.     ..|+++|+||+|+.
T Consensus        86 ~V~D~t~--~-e~~~~~~~~l~~~-----~~p~ilv~NK~Dl~  120 (272)
T 3b1v_A           86 NVVDATN--L-ERNLYLTTQLIET-----GIPVTIALNMIDVL  120 (272)
T ss_dssp             EEEEGGG--H-HHHHHHHHHHHHT-----CSCEEEEEECHHHH
T ss_pred             EEecCCc--h-HhHHHHHHHHHhc-----CCCEEEEEEChhhC
Confidence            9976553  2 2233444445442     28999999999984

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.47  E-value=3.8e-13  Score=108.82  Aligned_cols=108  Identities=18%  Similarity=0.233  Sum_probs=67.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+|||||||+|+|.+.......+    |.........+++..+.+|||||....       ......++  ..+|+++
T Consensus        22 vG~~~vGKSsL~~~l~~~~~~~~~~----t~g~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~--~~~~~~i   88 (181)
T 1fzq_A           22 LGLDNAGKTTLLKQLASEDISHITP----TQGFNIKSVQSQGFKLNVWDIGGQRKI-------RPYWRSYF--ENTDILI   88 (181)
T ss_dssp             EESTTSSHHHHHHHHCCSCCEEEEE----ETTEEEEEEEETTEEEEEEECSSCGGG-------HHHHHHHH--TTCSEEE
T ss_pred             ECCCCCCHHHHHHHHhcCCCCcccC----cCCeEEEEEEECCEEEEEEECCCCHHH-------HHHHHHHh--CCCCEEE
Confidence            5999999999999999986432221    222333455667899999999997421       11222222  4789999


Q ss_pred             EEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           81 YVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|++++... +... ..++..+.+..+ ....|+++|+||+|+.
T Consensus        89 ~v~d~~~~~s~~~~-~~~~~~~~~~~~-~~~~piilv~NK~Dl~  130 (181)
T 1fzq_A           89 YVIDSADRKRFEET-GQELTELLEEEK-LSCVPVLIFANKQDLL  130 (181)
T ss_dssp             EEEETTCGGGHHHH-HHHHHHHTTCGG-GTTCCEEEEEECTTST
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHhChh-hcCCCEEEEEECcCcc
Confidence            998876522 2222 223333322111 1237999999999995

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.47  E-value=1.1e-13  Score=111.68  Aligned_cols=115  Identities=16%  Similarity=0.109  Sum_probs=71.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|+|++..... ...+..+..........++  ..+.+|||||..+.       ......++  ..+|+
T Consensus        16 ~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~--~~~d~   85 (186)
T 2bme_A           16 IGNAGTGKSCLLHQFIEKKFKD-DSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF-------RSVTRSYY--RGAAG   85 (186)
T ss_dssp             EESTTSSHHHHHHHHHHSSCCT-TCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGG-------HHHHHTTS--TTCSE
T ss_pred             ECCCCCCHHHHHHHHHcCCCCC-CCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHH-------HHHHHHHH--hcCCE
Confidence            5999999999999999876422 1112222233334455566  57899999996321       11222222  47899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR  127 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~  127 (265)
                      +++|++++.......-..++..+......+  .|+++|+||+|+.+...
T Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~  132 (186)
T 2bme_A           86 ALLVYDITSRETYNALTNWLTDARMLASQN--IVIILCGNKKDLDADRE  132 (186)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCC
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECcccccccc
Confidence            999988775321122235566666554333  79999999999954333

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.46  E-value=5.1e-14  Score=113.51  Aligned_cols=117  Identities=14%  Similarity=0.156  Sum_probs=53.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|+|++... .....+..+.........+++  ..+.+|||||..+....       ...+  ...+|+
T Consensus        14 ~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------~~~~--~~~~d~   83 (183)
T 2fu5_C           14 IGDSGVGKTCVLFRFSEDAF-NSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI-------TTAY--YRGAMG   83 (183)
T ss_dssp             ECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC----------------CCTT--TTTCSE
T ss_pred             ECCCCCCHHHHHHHHHhCCC-CCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhh-------HHHH--HhcCCE
Confidence            59999999999999998753 111112222233334455666  67899999997432211       1111  147899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD  129 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~  129 (265)
                      +++|++++.......-..++..+......+  .|+++|+||+|+.+....+
T Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~v~  132 (183)
T 2fu5_C           84 IMLVYDITNEKSFDNIRNWIRNIEEHASAD--VEKMILGNKCDVNDKRQVS  132 (183)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEEC--CCSCCCSC
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECccCCccCcCC
Confidence            999988775321122234666666554333  7999999999996433333

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.46  E-value=6.9e-13  Score=107.67  Aligned_cols=114  Identities=11%  Similarity=0.108  Sum_probs=71.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHH-HHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAI-QLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~-~~i~~~l~~~~~d   77 (265)
                      +|.+|+|||||+|+|++...... ..+..+.........+++  ..+.+|||||..+       .. .....++  ..+|
T Consensus        26 ~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~--~~~d   95 (189)
T 1z06_A           26 IGDSNVGKTCLTYRFCAGRFPDR-TEATIGVDFRERAVDIDGERIKIQLWDTAGQER-------FRKSMVQHYY--RNVH   95 (189)
T ss_dssp             ECCTTSSHHHHHHHHHHSSCCSS-CCCCCSCCEEEEEEEETTEEEEEEEEECCCSHH-------HHTTTHHHHH--TTCC
T ss_pred             ECCCCCCHHHHHHHHHcCCCCCC-CCCCcceEEEEEEEEECCEEEEEEEEECCCchh-------hhhhhhHHHh--cCCC
Confidence            59999999999999998764221 122223333344555565  5789999999621       21 1222222  4789


Q ss_pred             EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCC
Q 024586           78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP  125 (265)
Q Consensus        78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~  125 (265)
                      ++++|++++..........+++.+.+.... ...|+++|+||+|+...
T Consensus        96 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~  142 (189)
T 1z06_A           96 AVVFVYDMTNMASFHSLPAWIEECKQHLLA-NDIPRILVGNKCDLRSA  142 (189)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHCCC-SCCCEEEEEECTTCGGG
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc
Confidence            999998876422112234466666665421 23789999999999543

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.46  E-value=1.4e-13  Score=112.02  Aligned_cols=113  Identities=17%  Similarity=0.141  Sum_probs=68.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA--GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~--g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|+|++........ +..+..........+  +..+.+|||||..+.....       ..++  ..+|+
T Consensus        31 ~G~~~~GKSsLi~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~--~~~d~  100 (193)
T 2oil_A           31 IGESGVGKTNLLSRFTRNEFSHDSR-TTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAIT-------SAYY--RGAVG  100 (193)
T ss_dssp             ESSTTSSHHHHHHHHHHSCCCSSCC-CCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTH-------HHHH--TTCCE
T ss_pred             ECcCCCCHHHHHHHHhcCCCCCCCC-CccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhh-------HHHh--ccCCE
Confidence            6999999999999999976432221 111111222233333  4578999999986543221       1111  37899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP  125 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~  125 (265)
                      +++|++++..........++..+......  ..|+++|+||+|+...
T Consensus       101 vi~v~D~~~~~s~~~~~~~l~~i~~~~~~--~~piilv~nK~Dl~~~  145 (193)
T 2oil_A          101 ALLVFDLTKHQTYAVVERWLKELYDHAEA--TIVVMLVGNKSDLSQA  145 (193)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHTTSCT--TCEEEEEEECGGGGGG
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEECCCcccc
Confidence            99998776422111223455555544322  3789999999999543

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.46  E-value=1.4e-13  Score=113.17  Aligned_cols=116  Identities=16%  Similarity=0.115  Sum_probs=68.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|+|++..... ...+..+..........++  ..+.+|||||..+.....       ..++  ..+|+
T Consensus        31 ~G~~~~GKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~-------~~~~--~~~d~  100 (200)
T 2o52_A           31 IGSAGTGKSCLLHQFIENKFKQ-DSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVT-------RSYY--RGAAG  100 (200)
T ss_dssp             EESTTSSHHHHHHHHHC-------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCC-------HHHH--TTCSE
T ss_pred             ECcCCCCHHHHHHHHHhCCCCc-cCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHH-------HHHh--ccCCE
Confidence            5999999999999999876422 1122223333344555666  578999999963222111       1112  37899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRL  128 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~  128 (265)
                      +++|++++.......-..++..+.......  .|+++|+||+|+......
T Consensus       101 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~v  148 (200)
T 2o52_A          101 ALLVYDITSRETYNSLAAWLTDARTLASPN--IVVILCGNKKDLDPEREV  148 (200)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHTCTT--CEEEEEEECGGGGGGCCS
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCCccccccc
Confidence            999988775321122235555565544333  789999999998533333

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.46  E-value=1.4e-13  Score=110.76  Aligned_cols=109  Identities=12%  Similarity=0.029  Sum_probs=65.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+|||||||+|+|++.......    .|.........+++..+.+|||||..+......       .++  ..+|+++
T Consensus        24 ~G~~~~GKssli~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~~--~~~d~ii   90 (183)
T 1moz_A           24 LGLDGAGKTTILYRLQIGEVVTTK----PTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWR-------CYY--ADTAAVI   90 (183)
T ss_dssp             EEETTSSHHHHHHHTCCSEEEEEC----SSTTCCEEEEEETTEEEEEEEEC----CCTTGG-------GTT--TTEEEEE
T ss_pred             ECCCCCCHHHHHHHHhcCCcCccC----CcCccceEEEEECCEEEEEEECCCCHhHHHHHH-------HHh--ccCCEEE
Confidence            599999999999999987642222    222233445667789999999999865332211       111  4789999


Q ss_pred             EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|++++..........++..+.+... ....|+++|+||+|+.
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~  132 (183)
T 1moz_A           91 FVVDSTDKDRMSTASKELHLMLQEEE-LQDAALLVFANKQDQP  132 (183)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHTTSST-TSSCEEEEEEECTTST
T ss_pred             EEEECCCHHHHHHHHHHHHHHHcChh-hCCCeEEEEEECCCCC
Confidence            99887643211222233333322210 1237999999999995

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.45  E-value=8.8e-13  Score=107.77  Aligned_cols=115  Identities=13%  Similarity=0.127  Sum_probs=71.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|+|++....  ....+++.........+++  ..+.+|||||..+    .......++      .+|+
T Consensus        34 ~G~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~~~~------~~d~  101 (196)
T 2atv_A           34 FGRAGVGKSALVVRFLTKRFI--WEYDPTLESTYRHQATIDDEVVSMEILDTAGQED----TIQREGHMR------WGEG  101 (196)
T ss_dssp             ECCTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC----CHHHHHHHH------HCSE
T ss_pred             ECCCCCCHHHHHHHHHhCCCC--cccCCCCCceEEEEEEECCEEEEEEEEECCCCCc----ccchhhhhc------cCCE
Confidence            599999999999999987642  2223333333333344555  4689999999865    222222222      6799


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRL  128 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~  128 (265)
                      +++|++++.......-..+++.+.+.... ...|+++|+||+|+......
T Consensus       102 iilv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~~~~v  150 (196)
T 2atv_A          102 FVLVYDITDRGSFEEVLPLKNILDEIKKP-KNVTLILVGNKADLDHSRQV  150 (196)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTT-SCCCEEEEEECGGGGGGCCS
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhhCC-CCCcEEEEEECccccccccc
Confidence            99998877522112223455555554321 13789999999999543333

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.45  E-value=3.3e-13  Score=110.53  Aligned_cols=109  Identities=20%  Similarity=0.166  Sum_probs=70.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|+|++..  ......+++..........++.  .+.+|||||..+......       .+  ...+|+
T Consensus        26 ~G~~~~GKssl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~--~~~~~~   94 (201)
T 2q3h_A           26 VGDGAVGKTSLVVSYTTNG--YPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRP-------LC--YTNTDI   94 (201)
T ss_dssp             ECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGG-------GG--GTTCSE
T ss_pred             ECCCCCCHHHHHHHHHhCC--CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhH-------hh--cCCCcE
Confidence            6999999999999999876  3344445555444455666775  567999999865433221       11  147899


Q ss_pred             EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +++|++++... +......++..+.....   ..|+++|+||+|+.
T Consensus        95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~  137 (201)
T 2q3h_A           95 FLLCFSVVSPSSFQNVSEKWVPEIRCHCP---KAPIILVGTQSDLR  137 (201)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCS---SSCEEEEEECGGGG
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEECHhhh
Confidence            99998877532 22222246666666543   38999999999985

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.45  E-value=3e-13  Score=109.90  Aligned_cols=111  Identities=11%  Similarity=0.085  Sum_probs=71.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+|+|||||+|+|++...+... . ..|.........+++..+.+|||||..+.....       ..++  ..+|+++
T Consensus        27 ~G~~~~GKSsli~~l~~~~~~~~~-~-~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-------~~~~--~~~d~ii   95 (190)
T 2h57_A           27 LGLDNSGKTTIINKLKPSNAQSQN-I-LPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLW-------EHYY--KEGQAII   95 (190)
T ss_dssp             EECTTSSHHHHHHHTSCGGGCCSS-C-CCCSSEEEEEEECSSCEEEEEEECCSTTTGGGG-------GGGG--GGCSEEE
T ss_pred             ECCCCCCHHHHHHHHhcCCCCCCC-c-CCccceeEEEEEECCEEEEEEECCCCHHHHHHH-------HHHH--hcCCEEE
Confidence            599999999999999998632222 2 234445556677788999999999975432211       1112  3789999


Q ss_pred             EEEecCCcC-CCHHHHHHHHHHHHhcCc-CcCCcEEEEEeCccCC
Q 024586           81 YVDRLDVYR-VDNLDKQITRAITDNFGE-QIWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~~r-~~~~d~~~l~~l~~~~g~-~~~~~~ivV~tk~D~~  123 (265)
                      +|++++... +... ..++..+.+.... ....|+++|+||+|+.
T Consensus        96 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  139 (190)
T 2h57_A           96 FVIDSSDRLRMVVA-KEELDTLLNHPDIKHRRIPILFFANKMDLR  139 (190)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHSTTTTTSCCCEEEEEECTTST
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHhChhhccCCCeEEEEEeCcCcc
Confidence            998776422 2222 2344444333211 0238999999999995

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.44  E-value=1.9e-13  Score=112.10  Aligned_cols=115  Identities=15%  Similarity=0.135  Sum_probs=48.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCC-ccEEEEeeeCC----eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGP-RPVMVSRSRAG----FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKT   75 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~-~~~~~~~~~~g----~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~   75 (265)
                      +|.+|+|||||+|+|++......+...+++. ........+++    ..+.+|||||..       ........+  ...
T Consensus        26 ~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-------~~~~~~~~~--~~~   96 (208)
T 2yc2_C           26 VGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD-------LYKEQISQY--WNG   96 (208)
T ss_dssp             C----------------------------------CEEEECTTSSEEEEEEEEETTTTH-------HHHHHHSTT--CCC
T ss_pred             ECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcH-------HHHHHHHHH--Hhh
Confidence            6999999999999999983223333333332 33334455554    578999999982       222222222  257


Q ss_pred             ccEEEEEEecCCcCCCHHHHHHHHHHHHhcCc-CcCCcEEEEEeCccCCC
Q 024586           76 IDVLLYVDRLDVYRVDNLDKQITRAITDNFGE-QIWKRALIVLTHAQLSL  124 (265)
Q Consensus        76 ~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~-~~~~~~ivV~tk~D~~~  124 (265)
                      +|++++|++++..........++..+....+. ....|+++|+||+|+..
T Consensus        97 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~  146 (208)
T 2yc2_C           97 VYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP  146 (208)
T ss_dssp             CCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred             CcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence            89999998877532222334566677665441 02379999999999964

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.44  E-value=7.2e-13  Score=107.45  Aligned_cols=112  Identities=20%  Similarity=0.160  Sum_probs=68.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|+|++...  .....+++..........++.  .+.+|||||..+...       ....++  ..+|+
T Consensus        27 vG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~--~~~d~   95 (190)
T 3con_A           27 VGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA-------MRDQYM--RTGEG   95 (190)
T ss_dssp             ECSTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC------------------C--TTCSE
T ss_pred             ECcCCCCHHHHHHHHHcCCC--ccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHH-------HHHHhh--CcCCE
Confidence            59999999999999998763  233334444444445556664  588999999743221       112222  47899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      +++|+++++.........+++.+...... ...|+++|+||+|+.+
T Consensus        96 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~ilv~nK~Dl~~  140 (190)
T 3con_A           96 FLCVFAINNSKSFADINLYREQIKRVKDS-DDVPMVLVGNKCDLPT  140 (190)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHTC-SCCCEEEEEECTTCSC
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECCcCCc
Confidence            99998877532112223455555554331 1279999999999864

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.44  E-value=2.6e-13  Score=110.51  Aligned_cols=109  Identities=18%  Similarity=0.166  Sum_probs=73.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|+|++...  .....+++..........++  ..+.+|||||..+......       .+  ...+|+
T Consensus        24 ~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~-------~~--~~~~d~   92 (194)
T 2atx_A           24 VGDGAVGKTCLLMSYANDAF--PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRP-------LS--YPMTDV   92 (194)
T ss_dssp             EECTTSSHHHHHHHHHHSSC--CCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGG-------GG--CTTCSE
T ss_pred             ECCCCCCHHHHHHHHhcCCC--CCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHH-------Hh--cCCCCE
Confidence            59999999999999998753  33334444444444555666  5789999999865432211       11  147899


Q ss_pred             EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +++|++++... +......++..+.+...   ..|+++|+||+|+.
T Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~  135 (194)
T 2atx_A           93 FLICFSVVNPASFQNVKEEWVPELKEYAP---NVPFLLIGTQIDLR  135 (194)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECTTST
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhc
Confidence            99998876532 33333356667766543   28999999999995

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.44  E-value=7.5e-13  Score=108.56  Aligned_cols=115  Identities=15%  Similarity=0.109  Sum_probs=70.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|+|++...... ..+..+..........++  ..+.+|||||..+.       ......++  ..+|+
T Consensus        14 ~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~--~~~d~   83 (203)
T 1zbd_A           14 IGNSSVGKTSFLFRYADDSFTPA-FVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERY-------RTITTAYY--RGAMG   83 (203)
T ss_dssp             ECSTTSSHHHHHHHHHTCCCCSC-CCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG-------HHHHHTTG--GGCSE
T ss_pred             ECCCCCCHHHHHHHHhcCCCCCC-cCCccceeEEEEEEEECCeEEEEEEEECCCchhh-------cchHHHhh--cCCCE
Confidence            69999999999999999874221 111112222223334443  57899999997321       11222222  37899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR  127 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~  127 (265)
                      +++|++++..........++..+......  ..|+++|+||+|+.....
T Consensus        84 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~~  130 (203)
T 1zbd_A           84 FILMYDITNEESFNAVQDWSTQIKTYSWD--NAQVLLVGNKCDMEDERV  130 (203)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCS--SCEEEEEEECTTCTTSCC
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccCcccc
Confidence            99998876532112233456666554422  379999999999964333

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.43  E-value=2.4e-13  Score=112.33  Aligned_cols=109  Identities=15%  Similarity=0.156  Sum_probs=70.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|+|++....  ....+++..........++  ..+.+|||||..+......       .+  ...+|+
T Consensus        31 vG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~--~~~~d~   99 (207)
T 2fv8_A           31 VGDGACGKTCLLIVFSKDEFP--EVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRP-------LS--YPDTDV   99 (207)
T ss_dssp             EECTTSSHHHHHHHHHHSSCC---------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGG-------GG--CTTCCE
T ss_pred             ECcCCCCHHHHHHHHhcCCCC--CcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHH-------hh--cCCCCE
Confidence            599999999999999987642  2222333333333455666  4678999999865432211       11  147899


Q ss_pred             EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +++|++++... +...+..++..+.....   ..|+++|+||+|+.
T Consensus       100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~  142 (207)
T 2fv8_A          100 ILMCFSVDSPDSLENIPEKWVPEVKHFCP---NVPIILVANKKDLR  142 (207)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECGGGG
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEchhhh
Confidence            99998887532 33333556677766432   28999999999985

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.43  E-value=9.8e-13  Score=117.00  Aligned_cols=108  Identities=12%  Similarity=0.144  Sum_probs=68.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+|||||||+|+|++....  ...  .|...........+..+.+|||||........       ..++  ..+|++|
T Consensus       171 vG~~~vGKSsLl~~l~~~~~~--~~~--pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------~~~~--~~ad~vi  237 (329)
T 3o47_A          171 VGLDAAGKTTILYKLKLGEIV--TTI--PTIGFNVETVEYKNISFTVWDVGGQDKIRPLW-------RHYF--QNTQGLI  237 (329)
T ss_dssp             EESTTSSHHHHHHHTCSSCCE--EEE--EETTEEEEEEEETTEEEEEEECC-----CCSH-------HHHH--TTEEEEE
T ss_pred             ECCCCccHHHHHHHHhCCCCC--Ccc--cccceEEEEEecCcEEEEEEECCCCHhHHHHH-------HHHh--ccCCEEE
Confidence            599999999999999998742  222  24445555677788999999999964433221       1122  3789999


Q ss_pred             EEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           81 YVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|++++... +......+.+.+......  ..|+++|+||+|+.
T Consensus       238 lV~D~~~~~s~~~~~~~~~~~~~~~~~~--~~piilV~NK~Dl~  279 (329)
T 3o47_A          238 FVVDSNDRERVNEAREELMRMLAEDELR--DAVLLVFANKQDLP  279 (329)
T ss_dssp             EEEETTCSSSHHHHHHHHHHHHTCGGGT--TCEEEEEEECTTST
T ss_pred             EEEECCchHHHHHHHHHHHHHHhhhccC--CCeEEEEEECccCC
Confidence            998886533 333333333333332212  27899999999995

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.43  E-value=5.6e-13  Score=117.40  Aligned_cols=118  Identities=17%  Similarity=0.090  Sum_probs=74.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeee-CCeEEEEEeCCCCCCCCCCcHHHHH-HHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR-AGFTLNIVDTPGLIEGGYVNYHAIQ-LIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~-~g~~v~iiDTPG~~~~~~~~~~~~~-~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|++++.....++...++|.........+ ++..+.+|||||..+.   .+.+.. ....++  .++|+
T Consensus         9 vG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~---~~~~~~~~~~~~~--~~ad~   83 (307)
T 3r7w_A            9 MGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF---MENYFTKQKDHIF--QMVQV   83 (307)
T ss_dssp             ECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH---HHHHHTTTHHHHH--TTCSE
T ss_pred             ECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHH---hhhhhhhHHHHHh--ccCCE
Confidence            6999999999999999985445555566677666655554 5678999999997321   000101 111122  47899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +++|++++.......-..+.+.+..........|+++|+||+|+.
T Consensus        84 vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~  128 (307)
T 3r7w_A           84 LIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLV  128 (307)
T ss_dssp             EEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGS
T ss_pred             EEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeccccc
Confidence            999988775321122223333333322111228999999999985

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.43  E-value=5.5e-13  Score=107.85  Aligned_cols=113  Identities=18%  Similarity=0.087  Sum_probs=67.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccE-EEEeeeC-----------CeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPV-MVSRSRA-----------GFTLNIVDTPGLIEGGYVNYHAIQLIK   68 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~-~~~~~~~-----------g~~v~iiDTPG~~~~~~~~~~~~~~i~   68 (265)
                      +|.+|+|||||+|+|++.... ....+..+.... .......           ...+.+|||||...       ......
T Consensus        17 ~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~   88 (195)
T 3bc1_A           17 LGDSGVGKTSVLYQYTDGKFN-SKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER-------FRSLTT   88 (195)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCC-CSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG-------GHHHHH
T ss_pred             ECCCCCCHHHHHHHHhcCCCC-cCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH-------HHHHHH
Confidence            599999999999999987631 111111111111 1233333           34789999999732       112222


Q ss_pred             HHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           69 RFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        69 ~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      .++  ..+|++++|++++.......-..++..+...... ...|+++|+||+|+.+
T Consensus        89 ~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~  141 (195)
T 3bc1_A           89 AFF--RDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYS-ENPDIVLCGNKSDLED  141 (195)
T ss_dssp             HTT--TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSS-SSCCEEEEEECTTCGG
T ss_pred             HHH--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccc
Confidence            222  4789999998776422112224556666554431 2379999999999854

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.43  E-value=5.3e-13  Score=108.91  Aligned_cols=109  Identities=10%  Similarity=0.091  Sum_probs=71.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+|||||||+|+|.+......    ..|.........+++..+.+|||||..+.....       ..++  ..+|+++
T Consensus        29 vG~~~vGKSsli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~--~~~d~~i   95 (190)
T 1m2o_B           29 LGLDNAGKTTLLHMLKNDRLATL----QPTWHPTSEELAIGNIKFTTFDLGGHIQARRLW-------KDYF--PEVNGIV   95 (190)
T ss_dssp             EESTTSSHHHHHHHHHHSCCCCC----CCCCSCEEEEEEETTEEEEEEECCCSGGGTTSG-------GGGC--TTCCEEE
T ss_pred             ECCCCCCHHHHHHHHhcCCCCcc----ccCCCCCeEEEEECCEEEEEEECCCCHHHHHHH-------HHHH--hcCCEEE
Confidence            59999999999999998764221    234444556777889999999999985432211       1111  4789999


Q ss_pred             EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|++++..........++..+.+... ....|+++|+||+|+.
T Consensus        96 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~  137 (190)
T 1m2o_B           96 FLVDAADPERFDEARVELDALFNIAE-LKDVPFVILGNKIDAP  137 (190)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGG-GTTCCEEEEEECTTST
T ss_pred             EEEECCChHHHHHHHHHHHHHHcchh-hcCCCEEEEEECCCCc
Confidence            99887753211222334444433211 1237999999999995

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.43  E-value=2.7e-13  Score=111.41  Aligned_cols=116  Identities=16%  Similarity=0.198  Sum_probs=69.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR--AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~--~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|+|++....  ....+++..........  .+..+.+|||||..+.......+       +  ..+|+
T Consensus        30 vG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~-------~--~~~d~   98 (201)
T 3oes_A           30 LGYRCVGKTSLAHQFVEGEFS--EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSF-------I--IGVHG   98 (201)
T ss_dssp             EESTTSSHHHHHHHHHHSCCC--SCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGG-------T--TTCCE
T ss_pred             ECCCCcCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHH-------H--hcCCE
Confidence            599999999999999988742  22233333222333333  34678999999976544332211       1  37899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRL  128 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~  128 (265)
                      +++|++++.......-..++..+....+. ...|+++|+||+|+.+....
T Consensus        99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~v  147 (201)
T 3oes_A           99 YVLVYSVTSLHSFQVIESLYQKLHEGHGK-TRVPVVLVGNKADLSPEREV  147 (201)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHC------CCCEEEEEECTTCGGGCCS
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccCcccccc
Confidence            99998877532112223445555443221 13789999999998644433

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.43  E-value=2.5e-13  Score=110.45  Aligned_cols=130  Identities=14%  Similarity=0.094  Sum_probs=70.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCccccc-CCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVS-TFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVL   79 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~-~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~i   79 (265)
                      +|.+|||||||+|+|++....... ...+++      ...+.+..+.+|||||..+.......++   ...+  ..+|++
T Consensus        54 vG~~g~GKSsll~~l~~~~~~~~~~~~~~~~------~~~~~~~~~~l~Dt~G~~~~~~~~~~~~---~~~~--~~~~~~  122 (193)
T 2ged_A           54 AGPQNSGKTSLLTLLTTDSVRPTVVSQEPLS------AADYDGSGVTLVDFPGHVKLRYKLSDYL---KTRA--KFVKGL  122 (193)
T ss_dssp             ECCTTSSHHHHHHHHHHSSCC------------------CCCCTTCSEEEETTCCBSSCCHHHHH---HHHG--GGEEEE
T ss_pred             ECCCCCCHHHHHHHHhcCCCCcccccCCCce------eeeecCCeEEEEECCCCchHHHHHHHHH---Hhhc--ccCCEE
Confidence            699999999999999987632110 111111      1122566789999999866543322222   2111  357999


Q ss_pred             EEEEecC-CcC-CCHHHHHHHHHHHHhcC--cCcCCcEEEEEeCccCCCCCCCCHHHHHhhchHHHHHH
Q 024586           80 LYVDRLD-VYR-VDNLDKQITRAITDNFG--EQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKF  144 (265)
Q Consensus        80 L~V~~~d-~~r-~~~~d~~~l~~l~~~~g--~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~~~~l~~~  144 (265)
                      ++|++.+ ... +... ..++..+.....  .....|+++|+||+|+..  ....++..+...+.+.++
T Consensus       123 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~--~~~~~~~~~~l~~~l~~l  188 (193)
T 2ged_A          123 IFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFT--ARPPSKIKDALESEIQKV  188 (193)
T ss_dssp             EEEEETTCCHHHHHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT--CCCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCchhHHHH-HHHHHHHHhhhhhccccCCCEEEEEEchHhcC--CCCHHHHHHHHHHHHHHH
Confidence            9998776 211 2111 223333322211  111389999999999953  334444443333334333

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.42  E-value=8e-13  Score=116.16  Aligned_cols=77  Identities=18%  Similarity=0.265  Sum_probs=45.9

Q ss_pred             CeEEEEEeCCCCCCCC------CCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHH-HHHHHHHHHhcCcCcCCcEE
Q 024586           42 GFTLNIVDTPGLIEGG------YVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLD-KQITRAITDNFGEQIWKRAL  114 (265)
Q Consensus        42 g~~v~iiDTPG~~~~~------~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d-~~~l~~l~~~~g~~~~~~~i  114 (265)
                      +.++.+|||||+.+..      ...+........++  ..+|++++|++.....+...+ ..+++.+...     ..|++
T Consensus       130 ~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~-----~~~~i  202 (315)
T 1jwy_B          130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYI--KKQNAIIVAVTPANTDLANSDALQLAKEVDPE-----GKRTI  202 (315)
T ss_dssp             SCSEEEEECCCCC---------CSHHHHHHHHHHHH--HSTTEEEEEEEESSSCSTTCSHHHHHHHHCSS-----CSSEE
T ss_pred             CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHH--cCCCeEEEEEEecCcchhhhHHHHHHHHhCCC-----CCcEE
Confidence            4579999999997522      11222333334343  378998888765332344333 3555554432     38999


Q ss_pred             EEEeCccCCCC
Q 024586          115 IVLTHAQLSLP  125 (265)
Q Consensus       115 vV~tk~D~~~~  125 (265)
                      +|+||+|+...
T Consensus       203 ~v~NK~Dl~~~  213 (315)
T 1jwy_B          203 GVITKLDLMDK  213 (315)
T ss_dssp             EEEECTTSSCS
T ss_pred             EEEcCcccCCc
Confidence            99999999643

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.42  E-value=2.5e-13  Score=109.28  Aligned_cols=109  Identities=17%  Similarity=0.111  Sum_probs=71.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|+|++...  .....+++..........++.  .+.+|||||..+.....       ..+  ...+|+
T Consensus        11 ~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~--~~~~d~   79 (186)
T 1mh1_A           11 VGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR-------PLS--YPQTDV   79 (186)
T ss_dssp             ECSTTSSHHHHHHHHHHSSC--CSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTG-------GGG--CTTCSE
T ss_pred             ECCCCCCHHHHHHHHHcCCC--CCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHH-------HHh--ccCCcE
Confidence            59999999999999997653  233333444444444555665  45699999985432111       111  147899


Q ss_pred             EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +++|++++... +......++..+.+..+   ..|+++|+||+|+.
T Consensus        80 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~  122 (186)
T 1mh1_A           80 SLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLR  122 (186)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHST---TSCEEEEEECHHHH
T ss_pred             EEEEEECCChhhHHHHHHHHHHHHHHhCC---CCCEEEEeEccccc
Confidence            99998877522 33333356667766543   38999999999985

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.42  E-value=1.9e-12  Score=105.26  Aligned_cols=115  Identities=17%  Similarity=0.188  Sum_probs=70.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|+|++...  ...+.+++..........++  ..+.+|||||.......        ..++  ..+|+
T Consensus        27 vG~~~vGKTsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--------~~~~--~~~~~   94 (187)
T 3c5c_A           27 LGRRGAGKSALTVKFLTKRF--ISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC--------ERYL--NWAHA   94 (187)
T ss_dssp             ECCTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT--------HHHH--TTCSE
T ss_pred             ECCCCCcHHHHHHHHHhCCC--CcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH--------HHHH--hhCCE
Confidence            69999999999999998762  23334444333333444555  46789999998644321        1122  37899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCc-CcCCcEEEEEeCccCCCCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGE-QIWKRALIVLTHAQLSLPDR  127 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~-~~~~~~ivV~tk~D~~~~~~  127 (265)
                      +++|++++.......-..++..+...... ....|+++|+||+|+.....
T Consensus        95 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~  144 (187)
T 3c5c_A           95 FLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQ  144 (187)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCS
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCc
Confidence            99998887532112223455666554310 11279999999999853333

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.42  E-value=2.7e-13  Score=109.46  Aligned_cols=109  Identities=9%  Similarity=0.005  Sum_probs=68.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+|+|||||+|+|++..........+    .......+++..+.+|||||..+.....       ..++  ..+|+++
T Consensus        27 ~G~~~~GKSsli~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~--~~~d~ii   93 (181)
T 2h17_A           27 VGLDNAGKTTILYQFSMNEVVHTSPTIG----SNVEEIVINNTRFLMWDIGGQESLRSSW-------NTYY--TNTEFVI   93 (181)
T ss_dssp             EEETTSSHHHHHHHHHTTSCEEEECCSS----SSCEEEEETTEEEEEEEESSSGGGTCGG-------GGGG--TTCCEEE
T ss_pred             ECCCCCCHHHHHHHHhcCCCCccCCcCc----eeeEEEEECCEEEEEEECCCCHhHHHHH-------HHHh--ccCCEEE
Confidence            5899999999999999987522222222    2223455688999999999985432211       1111  4789999


Q ss_pred             EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|++++..........++..+.+... ....|+++|+||+|+.
T Consensus        94 ~v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~  135 (181)
T 2h17_A           94 VVVDSTDRERISVTREELYKMLAHED-LRKAGLLIFANKQDVK  135 (181)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTST
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhChh-hCCCeEEEEEECCCcc
Confidence            99887653211222333443333211 1237999999999995

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.42  E-value=3.2e-12  Score=105.73  Aligned_cols=109  Identities=16%  Similarity=0.171  Sum_probs=67.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeC---CeEEEEEeCCCCCCCCCCcHHHHH-HHHHHHhcCCc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA---GFTLNIVDTPGLIEGGYVNYHAIQ-LIKRFLLNKTI   76 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~---g~~v~iiDTPG~~~~~~~~~~~~~-~i~~~l~~~~~   76 (265)
                      +|.+|||||||+|+|++...  .....+++.  ......++   +..+.+|||||..       .+.. ....++  .++
T Consensus        13 vG~~~~GKTsli~~l~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~i~Dt~G~~-------~~~~~~~~~~~--~~~   79 (214)
T 2fh5_B           13 VGLCDSGKTLLFVRLLTGQY--RDTQTSITD--SSAIYKVNNNRGNSLTLIDLPGHE-------SLRFQLLDRFK--SSA   79 (214)
T ss_dssp             ECSTTSSHHHHHHHHHHSCC--CCBCCCCSC--EEEEEECSSTTCCEEEEEECCCCH-------HHHHHHHHHHG--GGE
T ss_pred             ECCCCCCHHHHHHHHhCCCc--ccccCCcce--eeEEEEecCCCccEEEEEECCCCh-------hHHHHHHHHHH--hhC
Confidence            69999999999999998763  233333332  22335555   6789999999983       2222 222222  478


Q ss_pred             cEEEEEEecCCcCCCHHHHHHHHHHHHhc----CcCcCCcEEEEEeCccCCC
Q 024586           77 DVLLYVDRLDVYRVDNLDKQITRAITDNF----GEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        77 d~iL~V~~~d~~r~~~~d~~~l~~l~~~~----g~~~~~~~ivV~tk~D~~~  124 (265)
                      |++++|++++.  +........+.+....    ......|+++|+||+|+..
T Consensus        80 ~~~i~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  129 (214)
T 2fh5_B           80 RAVVFVVDSAA--FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM  129 (214)
T ss_dssp             EEEEEEEETTT--HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTT
T ss_pred             CEEEEEEECCC--cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCC
Confidence            99999977653  2222233333333221    1122379999999999953

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.42  E-value=4.2e-13  Score=110.08  Aligned_cols=111  Identities=19%  Similarity=0.141  Sum_probs=65.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|+|++...... ..+..+.........+++  ..+.+|||||..+..   .    ....++  ..+|+
T Consensus        34 ~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---~----~~~~~~--~~~d~  103 (199)
T 2p5s_A           34 AGDAAVGKSSFLMRLCKNEFREN-ISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFR---S----IAKSYF--RKADG  103 (199)
T ss_dssp             ESSTTSSHHHHHHHHHHCCCC-----------CEEEEEEETTEEEEEEEEECTTCTTCH---H----HHHHHH--HHCSE
T ss_pred             ECcCCCCHHHHHHHHHhCCCCcc-CCCCccceeEEEEEEECCEEEEEEEEECCCCcchh---h----hHHHHH--hhCCE
Confidence            59999999999999998763211 111112222233444555  468999999974321   1    112222  26799


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +++|++++..........+++.+.......  .|+++|+||+|+.
T Consensus       104 iilv~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~  146 (199)
T 2p5s_A          104 VLLLYDVTCEKSFLNIREWVDMIEDAAHET--VPIMLVGNKADIR  146 (199)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHC-----CCEEEEEECGGGH
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccc
Confidence            999988765321122345566666554333  7999999999984

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.42  E-value=5e-13  Score=111.12  Aligned_cols=109  Identities=20%  Similarity=0.185  Sum_probs=61.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|+|++...  .....+++.........+++.  .+.+|||||..+....       ...++  .++|+
T Consensus        40 vG~~~vGKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~-------~~~~~--~~~d~  108 (214)
T 2j1l_A           40 VGDGGCGKTSLLMVFADGAF--PESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRL-------RPLFY--PDASV  108 (214)
T ss_dssp             EECTTSSHHHHHHHHHC---------CCCCCEEEEEEEEETTEEEEEEEEEC------------------------CEEE
T ss_pred             ECcCCCCHHHHHHHHHcCCC--CCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHH-------HHHHh--ccCCE
Confidence            59999999999999998763  222333443333444555655  6799999997433211       11111  37899


Q ss_pred             EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +++|++++... +......+++.+.....   ..|+++|+||+|+.
T Consensus       109 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~  151 (214)
T 2j1l_A          109 LLLCFDVTSPNSFDNIFNRWYPEVNHFCK---KVPIIVVGCKTDLR  151 (214)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCS---SCCEEEEEECGGGG
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhh
Confidence            99998876422 22222346666665442   27999999999985

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.41  E-value=6.8e-13  Score=109.05  Aligned_cols=109  Identities=16%  Similarity=0.150  Sum_probs=70.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|++++....  ....+++..........++.  .+.+|||||..+......       .+  ...+|+
T Consensus        31 vG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-------~~--~~~~d~   99 (201)
T 2gco_A           31 VGDGACGKTCLLIVFSKDQFP--EVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRP-------LS--YPDTDV   99 (201)
T ss_dssp             EESTTSSHHHHHHHHHHSSCC--SSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGG-------GG--CTTCSE
T ss_pred             ECCCCCCHHHHHHHHHhCcCC--cccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHH-------Hh--cCCCCE
Confidence            599999999999999987642  22223333333334455654  789999999743221111       11  247899


Q ss_pred             EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +++|++++... +......+++.+.....   ..|+++|+||+|+.
T Consensus       100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~  142 (201)
T 2gco_A          100 ILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLR  142 (201)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECGGGT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEecHHhh
Confidence            99998877532 33333456666666432   28999999999995

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.41  E-value=1.3e-12  Score=117.74  Aligned_cols=118  Identities=20%  Similarity=0.121  Sum_probs=70.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH-hcCCccEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL-LNKTIDVL   79 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l-~~~~~d~i   79 (265)
                      +|.+|+|||||+|+|+|... .+++...+|..+......++|..+.++||||+....  .....+.++..+ ....+|++
T Consensus       185 vG~~naGKSTLln~L~~~~~-~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~l--p~~lve~f~~tl~~~~~aD~i  261 (364)
T 2qtf_A          185 VGYTNSGKTSLFNSLTGLTQ-KVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGI--PPQIVDAFFVTLSEAKYSDAL  261 (364)
T ss_dssp             ECBTTSSHHHHHHHHHCC------------CCSCEEEEEETTEEEEEEECCCBCSSC--CGGGHHHHHHHHHGGGGSSEE
T ss_pred             ECCCCCCHHHHHHHHHCCCc-cccCCcccccCCEEEEEEECCEEEEEEeCCCchhcC--CHHHHHHHHHHHHHHHhCCEE
Confidence            69999999999999999874 556666778777778888899999999999975421  111112222222 12478999


Q ss_pred             EEEEecCCcC--CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           80 LYVDRLDVYR--VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        80 L~V~~~d~~r--~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ++|++.+...  .......+.+.+......+  .|+++|+||+|+.
T Consensus       262 l~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~--~p~ilV~NK~Dl~  305 (364)
T 2qtf_A          262 ILVIDSTFSENLLIETLQSSFEILREIGVSG--KPILVTLNKIDKI  305 (364)
T ss_dssp             EEEEETTSCHHHHHHHHHHHHHHHHHHTCCS--CCEEEEEECGGGC
T ss_pred             EEEEECCCCcchHHHHHHHHHHHHHHhCcCC--CCEEEEEECCCCC
Confidence            9997765321  1111112233343332122  7899999999985

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.41  E-value=3.2e-13  Score=121.89  Aligned_cols=112  Identities=19%  Similarity=0.273  Sum_probs=82.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCc----HHHHHHHHHHHhcCCc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN----YHAIQLIKRFLLNKTI   76 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~----~~~~~~i~~~l~~~~~   76 (265)
                      ||.++||||||+|+|+|... .+++++.+|..+......+.+.++.++||||+.++....    ...+..++      .+
T Consensus        78 vG~PNvGKSTL~n~Lt~~~~-~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~------~a  150 (376)
T 4a9a_A           78 VGFPSVGKSTLLSKLTGTES-EAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVAR------TC  150 (376)
T ss_dssp             ECCCCHHHHHHHHHHHSBCC-CGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHH------HC
T ss_pred             ECCCCCCHHHHHHHHhCCCC-cccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHH------hc
Confidence            69999999999999999874 778899999999999999999999999999998754332    23444444      67


Q ss_pred             cEEEEEEecCCcCCCHHHHHHHHHHHHhcCcC-cCCcEEEEEeCccC
Q 024586           77 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQ-IWKRALIVLTHAQL  122 (265)
Q Consensus        77 d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~-~~~~~ivV~tk~D~  122 (265)
                      |++++|++...   ...+.+.+..-...++.. ..+|.++++||.|.
T Consensus       151 d~il~vvD~~~---p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~  194 (376)
T 4a9a_A          151 NLLFIILDVNK---PLHHKQIIEKELEGVGIRLNKTPPDILIKKKEK  194 (376)
T ss_dssp             SEEEEEEETTS---HHHHHHHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred             CccccccccCc---cHHHHHHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence            99999965542   123444444333444432 23688999999986

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.41  E-value=4.7e-13  Score=107.17  Aligned_cols=113  Identities=16%  Similarity=0.066  Sum_probs=66.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeC---CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA---GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~---g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (265)
                      +|.+|+|||||+|+|++..... ...+..+.........++   ...+.+|||||..+..       .....+  ...+|
T Consensus        14 ~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~--~~~~d   83 (182)
T 1ky3_A           14 LGDSGVGKTSLMHRYVNDKYSQ-QYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQ-------SLGVAF--YRGAD   83 (182)
T ss_dssp             ECCTTSSHHHHHHHHHHSCCCT-TC---CCCSCEEEEECCSSSCCEEEEEECCC-----------------CC--STTCC
T ss_pred             ECCCCCCHHHHHHHHHhCcCCc-ccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhh-------hhhHHH--hhcCC
Confidence            5999999999999999876421 111222334444455554   3578999999963321       111111  14789


Q ss_pred             EEEEEEecCCcCCCHHHHHHHHHHHHhcC--cCcCCcEEEEEeCccCC
Q 024586           78 VLLYVDRLDVYRVDNLDKQITRAITDNFG--EQIWKRALIVLTHAQLS  123 (265)
Q Consensus        78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g--~~~~~~~ivV~tk~D~~  123 (265)
                      ++++|++++..........++..+.....  .....|+++|+||+|+.
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  131 (182)
T 1ky3_A           84 CCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAE  131 (182)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSC
T ss_pred             EEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccc
Confidence            99999887653211223455556655443  11237999999999984

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.40  E-value=6.6e-13  Score=109.11  Aligned_cols=108  Identities=15%  Similarity=0.156  Sum_probs=65.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+|||||||+|+|.+.......    .|.........+++..+.+|||||.........       .++  .++|+++
T Consensus        31 vG~~~vGKSsLi~~l~~~~~~~~~----~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-------~~~--~~~d~~i   97 (198)
T 1f6b_A           31 LGLDNAGKTTLLHMLKDDRLGQHV----PTLHPTSEELTIAGMTFTTFDLGGHIQARRVWK-------NYL--PAINGIV   97 (198)
T ss_dssp             EEETTSSHHHHHHHHSCC----------CCCCCSCEEEEETTEEEEEEEECC----CCGGG-------GGG--GGCSEEE
T ss_pred             ECCCCCCHHHHHHHHhcCCCCccC----CCCCceeEEEEECCEEEEEEECCCcHhhHHHHH-------HHH--hcCCEEE
Confidence            599999999999999987643222    122223346677889999999999754332211       111  3789999


Q ss_pred             EEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           81 YVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|++++... +.. ...++..+.+... ....|+++|+||+|+.
T Consensus        98 ~v~D~~~~~s~~~-~~~~~~~~~~~~~-~~~~piilv~NK~Dl~  139 (198)
T 1f6b_A           98 FLVDCADHERLLE-SKEELDSLMTDET-IANVPILILGNKIDRP  139 (198)
T ss_dssp             EEEETTCGGGHHH-HHHHHHHHHTCGG-GTTSCEEEEEECTTST
T ss_pred             EEEECCCHHHHHH-HHHHHHHHHhCcc-cCCCcEEEEEECCCcc
Confidence            998876532 222 2334444433211 1237999999999995

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.40  E-value=8.8e-13  Score=108.25  Aligned_cols=113  Identities=16%  Similarity=0.096  Sum_probs=69.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|+|++..... ...+..+.........+++  ..+.+|||||..+......       .++  ..+|+
T Consensus        14 ~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-------~~~--~~~d~   83 (207)
T 1vg8_A           14 LGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGV-------AFY--RGADC   83 (207)
T ss_dssp             ECCTTSSHHHHHHHHHHSCCCS-SCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCC-------GGG--TTCSE
T ss_pred             ECcCCCCHHHHHHHHHcCCCCC-CCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHH-------HHH--hCCcE
Confidence            5999999999999999886421 1112222333334444554  5789999999744322211       111  47899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCc--CcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGE--QIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~--~~~~~~ivV~tk~D~~  123 (265)
                      +++|++++.......-..++..+......  ....|+++|+||+|+.
T Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  130 (207)
T 1vg8_A           84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE  130 (207)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc
Confidence            99998776422112223455555554421  1237999999999996

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.40  E-value=1.3e-12  Score=109.39  Aligned_cols=118  Identities=15%  Similarity=0.166  Sum_probs=75.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCC-CCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~-t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (265)
                      ||.+|||||||++.+++...  ...+.++ +..........++.  .+.||||+|........       ..++  +++|
T Consensus        19 vGd~~VGKTsLi~r~~~~~f--~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~-------~~~~--~~a~   87 (216)
T 4dkx_A           19 LGEQSVGKTSLITRFMYDSF--DNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLI-------PSYI--RDSA   87 (216)
T ss_dssp             ECSTTSSHHHHHHHHHHSCC--C----------CEEEEEECSSCEEEEEEECCSCTTTCGGGH-------HHHH--TTCS
T ss_pred             ECcCCcCHHHHHHHHHhCCC--CCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHH-------HHHh--cccc
Confidence            69999999999999997653  2222222 22333334445554  56899999985443221       1111  4889


Q ss_pred             EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHH
Q 024586           78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE  131 (265)
Q Consensus        78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~  131 (265)
                      ++++|++++.......-..++..+.+..+++  .|+++|+||+|+...+..+.+
T Consensus        88 ~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~--~piilVgNK~Dl~~~r~V~~~  139 (216)
T 4dkx_A           88 AAVVVYDITNVNSFQQTTKWIDDVRTERGSD--VIIMLVGNKTDLADKRQVSIE  139 (216)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHTTS--SEEEEEEECTTCGGGCCSCHH
T ss_pred             EEEEEeecchhHHHHHHHHHHHHHHHhcCCC--CeEEEEeeccchHhcCcccHH
Confidence            9999999886443334456777777777655  789999999999654444544

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.40  E-value=6.2e-13  Score=109.82  Aligned_cols=115  Identities=16%  Similarity=0.153  Sum_probs=71.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|+|++... .....+..+.........+++.  .+.+|||||...       +......++  ..+|+
T Consensus        32 vG~~~vGKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~-------~~~~~~~~~--~~~d~  101 (201)
T 2ew1_A           32 IGNAGVGKTCLVRRFTQGLF-PPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER-------FRSITQSYY--RSANA  101 (201)
T ss_dssp             EESTTSSHHHHHHHHHHSSC-CTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG-------GHHHHGGGS--TTCSE
T ss_pred             ECcCCCCHHHHHHHHHhCCC-CCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHH-------HHHHHHHHH--hcCCE
Confidence            59999999999999998763 2222222222333345556664  689999999632       111222222  47899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR  127 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~  127 (265)
                      +++|++++.......-..+++.+.......  .|+++|+||+|+.....
T Consensus       102 ~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~~~~~  148 (201)
T 2ew1_A          102 LILTYDITCEESFRCLPEWLREIEQYASNK--VITVLVGNKIDLAERRE  148 (201)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCS
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccccc
Confidence            999988764221122245666666654333  78999999999954333

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.39  E-value=2.1e-12  Score=104.37  Aligned_cols=111  Identities=17%  Similarity=0.191  Sum_probs=67.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcH----HHHHHHHHHHh--cC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY----HAIQLIKRFLL--NK   74 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~----~~~~~i~~~l~--~~   74 (265)
                      +|.+|||||||+|+|++... ..+..+++|........  .  .+.+|||||+.+....+.    .+......++.  ..
T Consensus         7 ~G~~~~GKSsli~~l~~~~~-~~~~~~~~t~~~~~~~~--~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (190)
T 2cxx_A            7 AGRSNVGKSTLIYRLTGKKV-RRGKRPGVTRKIIEIEW--K--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAK   81 (190)
T ss_dssp             EEBTTSSHHHHHHHHHSCCC-SSSSSTTCTTSCEEEEE--T--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGG
T ss_pred             ECCCCCCHHHHHHHHhCcCC-ccCCCCCccceeEEEec--C--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhc
Confidence            59999999999999999873 44444555555443333  2  688999999865433322    22223333332  35


Q ss_pred             CccEEEEEEecCCcCCCHH------------HHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           75 TIDVLLYVDRLDVYRVDNL------------DKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        75 ~~d~iL~V~~~d~~r~~~~------------d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      .++++++|.+.+  .+...            +..+++.+...     ..|+++|+||+|+.
T Consensus        82 ~~~~v~~v~d~~--s~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~  135 (190)
T 2cxx_A           82 NIDVAVLVVDGK--AAPEIIKRWEKRGEIPIDVEFYQFLREL-----DIPTIVAVNKLDKI  135 (190)
T ss_dssp             GCCEEEEEEETT--HHHHHHHHHHHTTCCCHHHHHHHHHHHT-----TCCEEEEEECGGGC
T ss_pred             cCCEEEEEEcch--hhhhHHHhhhccCccHHHHHHHHHHHhc-----CCceEEEeehHhcc
Confidence            678888885543  22221            12222323221     28999999999985

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.39  E-value=8.1e-13  Score=119.02  Aligned_cols=117  Identities=21%  Similarity=0.261  Sum_probs=59.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCC------CCCCccE--EEEeeeCCe--EEEEEeCCCCCCCCCCcH------H-H
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQ------SEGPRPV--MVSRSRAGF--TLNIVDTPGLIEGGYVNY------H-A   63 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~------~~t~~~~--~~~~~~~g~--~v~iiDTPG~~~~~~~~~------~-~   63 (265)
                      +|.+|+|||||+|+|++...+..+...      ..|....  .......+.  .+++|||||+++.....+      . .
T Consensus        43 vG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i  122 (361)
T 2qag_A           43 VGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYI  122 (361)
T ss_dssp             CCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------CCTHHHH
T ss_pred             EcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHHHHHHHH
Confidence            699999999999999987654332211      1121111  122233454  689999999976422111      1 1


Q ss_pred             HHHHHHHH-----------hcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           64 IQLIKRFL-----------LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        64 ~~~i~~~l-----------~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      .+....++           ....+|+++|++......+...+..+++.+.    .  ..|+|+|+||+|+.
T Consensus       123 ~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~----~--~~piIlV~NK~Dl~  187 (361)
T 2qag_A          123 DEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH----N--KVNIVPVIAKADTL  187 (361)
T ss_dssp             HHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC----S---SCEEEEEECCSSS
T ss_pred             HHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc----c--CCCEEEEEECCCCC
Confidence            11111222           1234578888854323457888777766553    2  27999999999985

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.39  E-value=4.3e-13  Score=109.18  Aligned_cols=114  Identities=13%  Similarity=0.099  Sum_probs=70.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCccccc-CCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVS-TFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVL   79 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~-~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~i   79 (265)
                      +|.+|||||||+|+|++....... ...+.+...........+..+.+|||||..       ........++  ..+|++
T Consensus        29 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-------~~~~~~~~~~--~~~d~~   99 (191)
T 3dz8_A           29 IGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE-------RYRTITTAYY--RGAMGF   99 (191)
T ss_dssp             EESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHH-------HCHHHHHHHH--TTCCEE
T ss_pred             ECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChH-------HHHHHHHHHH--ccCCEE
Confidence            599999999999999987632111 111122222222333356789999999952       1122222222  478999


Q ss_pred             EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCC
Q 024586           80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP  125 (265)
Q Consensus        80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~  125 (265)
                      ++|++++..........+++.+.......  .|+++|+||+|+...
T Consensus       100 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~  143 (191)
T 3dz8_A          100 ILMYDITNEESFNAVQDWATQIKTYSWDN--AQVILVGNKCDMEEE  143 (191)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGG
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccc
Confidence            99988775322223345667776654333  799999999998543

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.38  E-value=3.5e-12  Score=104.37  Aligned_cols=116  Identities=13%  Similarity=0.072  Sum_probs=68.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEee-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS-RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVL   79 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~-~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~i   79 (265)
                      +|.+|||||||+|.+++............+......... .....+.+|||||..............++      ++|++
T Consensus        26 vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~------~~~~~   99 (196)
T 3llu_A           26 MGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFR------GTGAL   99 (196)
T ss_dssp             EESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHH------TCSEE
T ss_pred             ECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccc------cCCEE
Confidence            599999999999999986432211111122222222221 23468999999997653322100011222      78999


Q ss_pred             EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ++|++++.. +......+.+.+.+........|+++|+||+|+.
T Consensus       100 i~v~d~~~~-~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~  142 (196)
T 3llu_A          100 IYVIDAQDD-YMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGL  142 (196)
T ss_dssp             EEEEETTSC-CHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGS
T ss_pred             EEEEECCCc-hHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccC
Confidence            999888753 3344455555555542111238999999999985

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.38  E-value=3.9e-12  Score=104.30  Aligned_cols=120  Identities=16%  Similarity=0.048  Sum_probs=73.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|+|.+..... ...+.++.........+++.  .+.+|||||.....   ....   ..++  ..+|+
T Consensus        29 vG~~~vGKSsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~---~~~~---~~~~--~~~d~   99 (195)
T 3cbq_A           29 VGESGVGKSTLAGTFGGLQGDS-AHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAG---GWLR---DHCL--QTGDA   99 (195)
T ss_dssp             ECSTTSSHHHHHHHTCCEECCG-GGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGG---HHHH---HHHH--HHCSE
T ss_pred             ECCCCCCHHHHHHHHHhccCCc-cCCCCcccceEEEEEEECCEEEEEEEEecCCCccch---hhhH---HHhh--ccCCE
Confidence            6999999999999998754311 22233444444455566665  56789999984321   1111   1122  26799


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCH
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY  130 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~  130 (265)
                      +++|+++++......-..++..+...... ...|+++|+||+|+......+.
T Consensus       100 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~v~~  150 (195)
T 3cbq_A          100 FLIVFSVTDRRSFSKVPETLLRLRAGRPH-HDLPVILVGNKSDLARSREVSL  150 (195)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSTT-SCCCEEEEEECTTCTTTCCSCH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEeechhccccCCcCH
Confidence            99998887532112233455555554321 1379999999999964444443

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.38  E-value=6.8e-14  Score=114.83  Aligned_cols=113  Identities=20%  Similarity=0.146  Sum_probs=69.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|+|++..... ...+..+.........+++  ..+.+|||||..+.......+   +      ..+|+
T Consensus        39 vG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~---~------~~~d~  108 (199)
T 3l0i_B           39 IGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY---Y------RGAHG  108 (199)
T ss_dssp             ECCTTSCCTTTTTSSBCCCCCC-HHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC-----------CCCSE
T ss_pred             ECCCCCCHHHHHHHHhcCCCCC-CcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHH---h------hcCCE
Confidence            6999999999999999876422 2122233444445566666  468999999975543322211   1      47899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP  125 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~  125 (265)
                      +++|++++.......-..++..+......  ..|+++|+||+|+.+.
T Consensus       109 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ilv~nK~Dl~~~  153 (199)
T 3l0i_B          109 IIVVYDVTDQESFNNVKQWLQEIDRYASE--NVNKLLVGNKCDLTTK  153 (199)
T ss_dssp             EEECC-CCCSHHHHHHHHHHHHHHSCC-C--CSEEEEC-CCSSCC--
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhccC--CCCEEEEEECccCCcc
Confidence            99997766422112223455555544332  3799999999998543

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.38  E-value=4.8e-12  Score=101.35  Aligned_cols=106  Identities=15%  Similarity=0.128  Sum_probs=67.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|++++.....   ..+++.........+++.  .+.+|||||...     .   ..++      ++|+
T Consensus        13 vG~~~vGKTsli~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~---~~~~------~~d~   75 (178)
T 2iwr_A           13 LGDARSGKSSLIHRFLTGSYQV---LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----A---KFSG------WADA   75 (178)
T ss_dssp             ECCGGGCHHHHHHHHHHSCCCC---CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----H---HHHH------HCSE
T ss_pred             ECCCCCCHHHHHHHHHhCCCCC---cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----h---HHHH------hCCE
Confidence            6999999999999999876422   223333333445556664  578999999743     1   1222      5799


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCc-CcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGE-QIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~-~~~~~~ivV~tk~D~~  123 (265)
                      +++|++++.......-..+++.+...... ....|+++|+||+|+.
T Consensus        76 ~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~  121 (178)
T 2iwr_A           76 VIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS  121 (178)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence            99998877532112223344445444321 1237999999999984

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.38  E-value=7.3e-13  Score=109.49  Aligned_cols=109  Identities=17%  Similarity=0.125  Sum_probs=72.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|+|++...  .....+++.........+++  ..+.+|||||..+......       .+  ...+|+
T Consensus        15 ~G~~~~GKTsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~--~~~~d~   83 (212)
T 2j0v_A           15 VGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRP-------LS--YRGADI   83 (212)
T ss_dssp             EESTTSSHHHHHHHHHHSCC--CSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--C-------GG--GTTCSE
T ss_pred             ECCCCCCHHHHHHHHhcCCC--CccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHH-------hh--ccCCCE
Confidence            59999999999999998763  23333444444444455555  4789999999865432211       11  147899


Q ss_pred             EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +++|++++... +......++..+....+   ..|+++|+||+|+.
T Consensus        84 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~  126 (212)
T 2j0v_A           84 FVLAFSLISKASYENVLKKWMPELRRFAP---NVPIVLVGTKLDLR  126 (212)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEeCHHhh
Confidence            99998876532 22222356666766543   28999999999984

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.38  E-value=3.4e-13  Score=111.33  Aligned_cols=109  Identities=18%  Similarity=0.142  Sum_probs=70.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeE--EEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFT--LNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~--v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|++++...  .....+++..........++..  +.+|||||..+.....       ..  ....+|+
T Consensus        36 vG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------~~--~~~~~d~  104 (204)
T 4gzl_A           36 VGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLR-------PL--SYPQTDV  104 (204)
T ss_dssp             EESTTSSHHHHHHHHHHSCC--CC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTG-------GG--GCTTCSE
T ss_pred             ECcCCCCHHHHHHHHHhCCC--CCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHH-------HH--HhccCCE
Confidence            59999999999999997653  3333444444444445556654  4599999984332111       11  1147899


Q ss_pred             EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +++|++++... +......++..+.....   ..|+++|+||+|+.
T Consensus       105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~  147 (204)
T 4gzl_A          105 FLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLR  147 (204)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCS---SCCEEEEEECHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEechhhc
Confidence            99998877532 22222356666666542   28999999999985

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.38  E-value=2.3e-12  Score=104.55  Aligned_cols=112  Identities=15%  Similarity=0.064  Sum_probs=67.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|+|++..... ...+..+.........+++  ..+.+|||||..+.....       ..++  ..+|+
T Consensus        21 ~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~--~~~d~   90 (195)
T 1x3s_A           21 IGESGVGKSSLLLRFTDDTFDP-ELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLT-------PSYY--RGAQG   90 (195)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCCT-TCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSH-------HHHH--TTCCE
T ss_pred             ECCCCCCHHHHHHHHHcCCCCc-cCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhh-------HHHh--ccCCE
Confidence            5999999999999999876421 1111112222223344444  578999999975433221       1112  37899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +++|++++..........++..+..... ....|+++|+||+|+.
T Consensus        91 ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~  134 (195)
T 1x3s_A           91 VILVYDVTRRDTFVKLDNWLNELETYCT-RNDIVNMLVGNKIDKE  134 (195)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHTTCCS-CSCCEEEEEEECTTSS
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcC-cCCCcEEEEEECCcCc
Confidence            9999887642211222344455544322 1237899999999994

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.38  E-value=3.6e-12  Score=114.59  Aligned_cols=80  Identities=13%  Similarity=0.156  Sum_probs=45.3

Q ss_pred             CeEEEEEeCCCCCCCCC------CcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEE
Q 024586           42 GFTLNIVDTPGLIEGGY------VNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALI  115 (265)
Q Consensus        42 g~~v~iiDTPG~~~~~~------~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~iv  115 (265)
                      +..+++|||||+.+...      ..+.....+..++  .++|++++|+.......  ....+++.+......  .+++++
T Consensus       135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i--~~~d~iilvv~~~~~~~--~~~~~~~l~~~~~~~--~~~~i~  208 (360)
T 3t34_A          135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYI--EKPNCIILAISPANQDL--ATSDAIKISREVDPS--GDRTFG  208 (360)
T ss_dssp             SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHH--HSSSEEEEEEEETTSCG--GGCHHHHHHHHSCTT--CTTEEE
T ss_pred             CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHh--hcCCeEEEEeecccCCc--CCHHHHHHHHHhccc--CCCEEE
Confidence            34689999999987422      1122233333343  37898888854332221  112233333333222  278999


Q ss_pred             EEeCccCCCCCC
Q 024586          116 VLTHAQLSLPDR  127 (265)
Q Consensus       116 V~tk~D~~~~~~  127 (265)
                      |+||+|+.+...
T Consensus       209 V~nK~Dl~~~~~  220 (360)
T 3t34_A          209 VLTKIDLMDKGT  220 (360)
T ss_dssp             EEECGGGCCTTC
T ss_pred             EEeCCccCCCcc
Confidence            999999975443

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.36  E-value=2.9e-13  Score=108.67  Aligned_cols=109  Identities=17%  Similarity=0.137  Sum_probs=62.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|++++...  .....+++..........++.  .+.+|||||..+......       .++  ..+|+
T Consensus        14 ~G~~~~GKssl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~~--~~~d~   82 (182)
T 3bwd_D           14 VGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRP-------LSY--RGADV   82 (182)
T ss_dssp             ECSTTSSHHHHHHHHHHSCC--C----------CBCCCC-------CEEECCCC-CTTTTTGG-------GGG--TTCSE
T ss_pred             ECCCCCCHHHHHHHHhcCCC--CCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHH-------hhc--cCCCE
Confidence            59999999999999998763  222222322222222333443  456999999754332211       111  47899


Q ss_pred             EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +++|++++... +......+++.+.....   ..|+++|+||+|+.
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~  125 (182)
T 3bwd_D           83 FILAFSLISKASYENVSKKWIPELKHYAP---GVPIVLVGTKLDLR  125 (182)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEechhhh
Confidence            99998876422 22222346666766543   38999999999984

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.36  E-value=4.7e-13  Score=111.55  Aligned_cols=112  Identities=13%  Similarity=0.097  Sum_probs=69.3

Q ss_pred             CCCCCCCHHHHHHHHhCCC-cccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEE
Q 024586            1 MGKGGVGKSSTVNSIIGEK-AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVL   79 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~-~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~i   79 (265)
                      +|.+|||||||+|+++... ........+.+...........+..+.+|||||..........+   +      ..+|++
T Consensus        21 ~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~---~------~~~~~~   91 (221)
T 3gj0_A           21 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGY---Y------IQAQCA   91 (221)
T ss_dssp             EECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHH---H------TTCCEE
T ss_pred             ECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHH---H------hcCCEE
Confidence            5999999999999966433 21222222223333323333344678999999975443332211   1      378999


Q ss_pred             EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      ++|++++.......-..++..+.+...   ..|+++|+||+|+..
T Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~  133 (221)
T 3gj0_A           92 IIMFDVTSRVTYKNVPNWHRDLVRVCE---NIPIVLCGNKVDIKD  133 (221)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHST---TCCEEEEEECTTSSS
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECCcccc
Confidence            999887753222223456666666543   279999999999853

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.36  E-value=9.7e-13  Score=106.44  Aligned_cols=109  Identities=16%  Similarity=0.099  Sum_probs=68.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|+|++...  .....++..........+++  ..+.+|||||........       ..  ....+|+
T Consensus        13 ~G~~~vGKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~--~~~~~~~   81 (184)
T 1m7b_A           13 VGDSQCGKTALLHVFAKDCF--PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVR-------PL--SYPDSDA   81 (184)
T ss_dssp             EESTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTG-------GG--GCTTCSE
T ss_pred             ECCCCCCHHHHHHHHhcCCC--CCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhH-------Hh--hcCCCcE
Confidence            59999999999999998763  22222222222222334444  578999999974322111       11  1247899


Q ss_pred             EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +++|++++... +......++..+.+...   ..|+++|+||+|+.
T Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~  124 (184)
T 1m7b_A           82 VLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLR  124 (184)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCEEEEEEECGGGG
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEEcchhh
Confidence            99998877522 22222345566665432   27999999999985

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.35  E-value=4e-12  Score=110.66  Aligned_cols=76  Identities=20%  Similarity=0.322  Sum_probs=44.0

Q ss_pred             CeEEEEEeCCCCCCCCC---Cc---HHHHHHHHHHHhcCCcc-EEEEEEecCCcCCCHHHH-HHHHHHHHhcCcCcCCcE
Q 024586           42 GFTLNIVDTPGLIEGGY---VN---YHAIQLIKRFLLNKTID-VLLYVDRLDVYRVDNLDK-QITRAITDNFGEQIWKRA  113 (265)
Q Consensus        42 g~~v~iiDTPG~~~~~~---~~---~~~~~~i~~~l~~~~~d-~iL~V~~~d~~r~~~~d~-~~l~~l~~~~g~~~~~~~  113 (265)
                      +..+.+|||||+.+...   ..   ......+..++.  .+| ++|+|++.+. .+...+. .+++.+..     ...|+
T Consensus       124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~il~v~d~~~-~~~~~~~~~~~~~~~~-----~~~~~  195 (299)
T 2aka_B          124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT--KENCLILAVSPANS-DLANSDALKIAKEVDP-----QGQRT  195 (299)
T ss_dssp             CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHT--STTEEEEEEEESSS-CGGGCHHHHHHHHHCT-----TCSSE
T ss_pred             CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHc--CCCeEEEEEecCCc-chhhhHHHHHHHHhCC-----CCCeE
Confidence            36799999999975321   11   133334444443  445 4557766543 2444443 34444432     13799


Q ss_pred             EEEEeCccCCCC
Q 024586          114 LIVLTHAQLSLP  125 (265)
Q Consensus       114 ivV~tk~D~~~~  125 (265)
                      ++|+||+|+.+.
T Consensus       196 i~V~NK~Dl~~~  207 (299)
T 2aka_B          196 IGVITKLDLMDE  207 (299)
T ss_dssp             EEEEECGGGSCT
T ss_pred             EEEEEccccCCC
Confidence            999999999643

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.35  E-value=1.6e-12  Score=123.07  Aligned_cols=116  Identities=15%  Similarity=0.259  Sum_probs=71.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcc--cccCCCCCCCccEEEEeee----------------------------CC--------
Q 024586            1 MGKGGVGKSSTVNSIIGEKAV--TVSTFQSEGPRPVMVSRSR----------------------------AG--------   42 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~--~~~~~~~~t~~~~~~~~~~----------------------------~g--------   42 (265)
                      +|.+|+|||||+|+|+|....  .++..+.++..........                            ++        
T Consensus        71 vG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~~~~~~~~  150 (550)
T 2qpt_A           71 AGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRFMCAQLPN  150 (550)
T ss_dssp             EEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTEEEEECCC
T ss_pred             ECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccceEEeccc
Confidence            589999999999999999864  3444443322111111000                            00        


Q ss_pred             ---eEEEEEeCCCCCCCCCC--cH--HHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEE
Q 024586           43 ---FTLNIVDTPGLIEGGYV--NY--HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALI  115 (265)
Q Consensus        43 ---~~v~iiDTPG~~~~~~~--~~--~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~iv  115 (265)
                         ..+.+|||||+.+....  .+  .+...+..++  ..+|++|+|++.+...+...+..+++.+...     ..++++
T Consensus       151 ~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l--~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~-----~~pvil  223 (550)
T 2qpt_A          151 QVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFA--ERVDLIILLFDAHKLEISDEFSEAIGALRGH-----EDKIRV  223 (550)
T ss_dssp             HHHHHCEEEECCCBCC-------CCSCHHHHHHHHH--HHCSEEEEEEETTSCCCCHHHHHHHHHTTTC-----GGGEEE
T ss_pred             cccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHH--HhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc-----CCCEEE
Confidence               35899999999763211  10  0122222232  2679999997776434667777777766543     278999


Q ss_pred             EEeCccCC
Q 024586          116 VLTHAQLS  123 (265)
Q Consensus       116 V~tk~D~~  123 (265)
                      |+||+|+.
T Consensus       224 VlNK~Dl~  231 (550)
T 2qpt_A          224 VLNKADMV  231 (550)
T ss_dssp             EEECGGGS
T ss_pred             EEECCCcc
Confidence            99999985

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.34  E-value=1.2e-12  Score=127.16  Aligned_cols=111  Identities=17%  Similarity=0.201  Sum_probs=70.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEE--------Eee--------------------eCC----------
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMV--------SRS--------------------RAG----------   42 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~--------~~~--------------------~~g----------   42 (265)
                      +|.+|+|||||+|+|+|.+++.++..+.+ ..+...        ...                    ..+          
T Consensus        75 vG~~naGKSSLlNaLlg~~~~~v~~~p~T-~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~~l~~~~  153 (695)
T 2j69_A           75 LGDMKRGKSTFLNALIGENLLPSDVNPCT-AVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAKKLEQEK  153 (695)
T ss_dssp             ECCTTSCHHHHHHHHHTSSCSCCCCCTTT-CCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHHHHHTSS
T ss_pred             ECCCCCCHHHHHHHHhCCCCCCCCCCCCc-cceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHHHHhhcc
Confidence            59999999999999999987666654433 211100        000                    011          


Q ss_pred             --------------------eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHH-HH
Q 024586           43 --------------------FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITR-AI  101 (265)
Q Consensus        43 --------------------~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~-~l  101 (265)
                                          ..+.+|||||+.+........    ..++  ..+|++|||++.+. .++..+...+. .+
T Consensus       154 ~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~----~~~i--~~aD~vL~Vvda~~-~~s~~e~~~l~~~l  226 (695)
T 2j69_A          154 KQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELS----LGYV--NNCHAILFVMRASQ-PCTLGERRYLENYI  226 (695)
T ss_dssp             CCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHH----THHH--HSSSEEEEEEETTS-TTCHHHHHHHHHHT
T ss_pred             ccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHH----HHHH--HhCCEEEEEEeCCC-ccchhHHHHHHHHH
Confidence                                358999999986532222222    2222  37899999977653 36666665553 22


Q ss_pred             HHhcCcCcCCcEEEEEeCccCCC
Q 024586          102 TDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus       102 ~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      ...     ..|+++|+||+|+..
T Consensus       227 ~~~-----~~~iiiVlNK~Dl~~  244 (695)
T 2j69_A          227 KGR-----GLTVFFLVNAWDQVR  244 (695)
T ss_dssp             TTS-----CCCEEEEEECGGGGG
T ss_pred             Hhh-----CCCEEEEEECccccc
Confidence            221     268999999999853

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.33  E-value=1.5e-12  Score=108.04  Aligned_cols=111  Identities=15%  Similarity=0.092  Sum_probs=63.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeC------------CeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRA------------GFTLNIVDTPGLIEGGYVNYHAIQLIK   68 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~------------g~~v~iiDTPG~~~~~~~~~~~~~~i~   68 (265)
                      +|.+|||||||+|+|++.... ....+..+.........++            ...+.+|||||..       .+.....
T Consensus        31 vG~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~-------~~~~~~~  102 (217)
T 2f7s_A           31 LGDSGVGKTTFLYRYTDNKFN-PKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE-------RFRSLTT  102 (217)
T ss_dssp             ESCTTSSHHHHHHHHHCSCCC-CEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH-------HHHHHHH
T ss_pred             ECcCCCCHHHHHHHHhcCCCC-cCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcH-------hHHhHHH
Confidence            599999999999999987631 1111111111112223333            4578999999952       2222233


Q ss_pred             HHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcC--cCCcEEEEEeCccCCC
Q 024586           69 RFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQ--IWKRALIVLTHAQLSL  124 (265)
Q Consensus        69 ~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~--~~~~~ivV~tk~D~~~  124 (265)
                      .++  ..+|++++|++++...   ....+...+.......  ...|+++|+||+|+..
T Consensus       103 ~~~--~~~d~iilV~D~~~~~---s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~  155 (217)
T 2f7s_A          103 AFF--RDAMGFLLMFDLTSQQ---SFLNVRNWMSQLQANAYCENPDIVLIGNKADLPD  155 (217)
T ss_dssp             HHH--TTCCEEEEEEETTCHH---HHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGG
T ss_pred             HHh--cCCCEEEEEEECcCHH---HHHHHHHHHHHHHHhcCcCCCCEEEEEECCcccc
Confidence            333  4789999998776421   1112222233222211  2378999999999853

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.33  E-value=3.7e-12  Score=114.26  Aligned_cols=76  Identities=20%  Similarity=0.325  Sum_probs=44.8

Q ss_pred             CeEEEEEeCCCCCCCCC---Cc---HHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHH-HHHHHHHHhcCcCcCCcEE
Q 024586           42 GFTLNIVDTPGLIEGGY---VN---YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDK-QITRAITDNFGEQIWKRAL  114 (265)
Q Consensus        42 g~~v~iiDTPG~~~~~~---~~---~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~-~~l~~l~~~~g~~~~~~~i  114 (265)
                      +..+++|||||+.....   ..   +.+.+.+..++. ...+++|+|++.+. .+...+. .+++.+..   .  ..+++
T Consensus       129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiL~v~~a~~-~~~~~~~~~i~~~~~~---~--~~~~i  201 (353)
T 2x2e_A          129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT-KENCLILAVSPANS-DLANSDALKVAKEVDP---Q--GQRTI  201 (353)
T ss_dssp             CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHT-STTEEEEEEEETTS-CGGGCHHHHHHHHHCT---T--CTTEE
T ss_pred             CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHc-CCCeEEEEEecCCC-ccchhHHHHHHHHhCc---C--CCceE
Confidence            46799999999976321   11   233344444443 35567777755442 3444443 24443332   2  27999


Q ss_pred             EEEeCccCCC
Q 024586          115 IVLTHAQLSL  124 (265)
Q Consensus       115 vV~tk~D~~~  124 (265)
                      +|+||+|+.+
T Consensus       202 ~V~NK~Dl~~  211 (353)
T 2x2e_A          202 GVITKLDLMD  211 (353)
T ss_dssp             EEEECGGGSC
T ss_pred             EEeccccccC
Confidence            9999999964

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.33  E-value=1.4e-11  Score=102.79  Aligned_cols=114  Identities=15%  Similarity=0.095  Sum_probs=69.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeE--EEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFT--LNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~--v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      ||.+|||||||+|+++|......+..++++.........++|..  +.++||+|...      . ...+... ....+|+
T Consensus        43 vG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~------~-~~~l~~~-~~~~a~~  114 (211)
T 2g3y_A           43 IGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKG------E-NEWLHDH-CMQVGDA  114 (211)
T ss_dssp             ECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTH------H-HHHHHHC-CCCCCSE
T ss_pred             ECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcc------h-hhhHHHH-HHhhCCE
Confidence            69999999999999998654334443444444444556677764  57899998631      1 1122211 2246899


Q ss_pred             EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      +++|+++++.. +.. ...+...+.+... ....|+++|+||+|+..
T Consensus       115 ~ilVydvt~~~sf~~-~~~~~~~l~~~~~-~~~~piilVgNK~DL~~  159 (211)
T 2g3y_A          115 YLIVYSITDRASFEK-ASELRIQLRRARQ-TEDIPIILVGNKSDLVR  159 (211)
T ss_dssp             EEEEEETTCHHHHHH-HHHHHHHHHTSGG-GTTSCEEEEEECTTCGG
T ss_pred             EEEEEECCCHHHHHH-HHHHHHHHHHHhC-CCCCcEEEEEEChHHhc
Confidence            99998887532 222 2234444544321 11379999999999953

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.33  E-value=2.3e-12  Score=107.27  Aligned_cols=109  Identities=17%  Similarity=0.123  Sum_probs=69.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|+|++...  .....+++..........++  ..+.+|||||........       ..+  ...+|+
T Consensus        33 vG~~~vGKSsL~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------~~~--~~~~d~  101 (214)
T 3q3j_B           33 VGDVQCGKTAMLQVLAKDCY--PETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVR-------PLC--YSDSDA  101 (214)
T ss_dssp             ECSTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTG-------GGG--CTTCSE
T ss_pred             ECcCCCCHHHHHHHHhcCCC--CCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHH-------HHH--cCCCeE
Confidence            69999999999999998763  23333333332233334444  568999999974332211       111  147899


Q ss_pred             EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +++|++++... +......+++.+.....   ..|+++|+||+|+.
T Consensus       102 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~  144 (214)
T 3q3j_B          102 VLLCFDISRPETVDSALKKWRTEILDYCP---STRVLLIGCKTDLR  144 (214)
T ss_dssp             EEEEEETTCTHHHHHHHTHHHHHHHHHCT---TSEEEEEEECGGGG
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhc
Confidence            99998887532 22223466777776543   27999999999985

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.32  E-value=4.6e-12  Score=105.08  Aligned_cols=113  Identities=16%  Similarity=0.175  Sum_probs=65.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+|+|||||+|+|++.......    .+..+.. ...+.+..+.+|||||.....   ......++..  ...+|+++
T Consensus        18 ~G~~g~GKTsl~~~l~~~~~~~~~----~~~~~~~-~~~~~~~~~~l~Dt~G~~~~~---~~~~~~~~~~--~~~~~~~i   87 (218)
T 1nrj_B           18 AGPQNSGKTSLLTLLTTDSVRPTV----VSQEPLS-AADYDGSGVTLVDFPGHVKLR---YKLSDYLKTR--AKFVKGLI   87 (218)
T ss_dssp             ECSTTSSHHHHHHHHHHSSCCCBC----CCSSCEE-ETTGGGSSCEEEECCCCGGGT---HHHHHHHHHH--GGGEEEEE
T ss_pred             ECCCCCCHHHHHHHHhcCCCCCee----eecCceE-EEEeeCceEEEEECCCcHHHH---HHHHHHHHhc--cccCCEEE
Confidence            599999999999999987632110    0111111 122356678999999985432   1121222211  12479999


Q ss_pred             EEEecC-Cc-CCCHHHHHHHHHHHHhcC--cCcCCcEEEEEeCccCCC
Q 024586           81 YVDRLD-VY-RVDNLDKQITRAITDNFG--EQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        81 ~V~~~d-~~-r~~~~d~~~l~~l~~~~g--~~~~~~~ivV~tk~D~~~  124 (265)
                      +|++.. .. .+.... .++..+.....  .....|+++|+||+|+..
T Consensus        88 ~v~D~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  134 (218)
T 1nrj_B           88 FMVDSTVDPKKLTTTA-EFLVDILSITESSCENGIDILIACNKSELFT  134 (218)
T ss_dssp             EEEETTSCTTCCHHHH-HHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred             EEEECCCChHHHHHHH-HHHHHHHhcccccccCCCCEEEEEEchHhcc
Confidence            998876 32 244333 34444333211  112388999999999954

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.32  E-value=1.8e-12  Score=107.31  Aligned_cols=109  Identities=16%  Similarity=0.097  Sum_probs=68.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|+|++...  .....++..........+++  ..+.+|||||........       ..+  ...+|+
T Consensus        34 vG~~~vGKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------~~~--~~~~d~  102 (205)
T 1gwn_A           34 VGDSQCGKTALLHVFAKDCF--PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVR-------PLS--YPDSDA  102 (205)
T ss_dssp             EESTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTG-------GGG--CTTCSE
T ss_pred             ECCCCCCHHHHHHHHhcCCC--CCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHH-------Hhh--ccCCCE
Confidence            69999999999999998763  22222222222222334444  578999999974322111       111  147899


Q ss_pred             EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +++|++++... +......++..+.+...   ..|+++|+||+|+.
T Consensus       103 ~ilv~D~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~  145 (205)
T 1gwn_A          103 VLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLR  145 (205)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCEEEEEEECGGGG
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEechhhc
Confidence            99998877522 22222456666666543   27999999999985

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.32  E-value=2.8e-12  Score=103.98  Aligned_cols=113  Identities=13%  Similarity=0.063  Sum_probs=62.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCC-------CCCCCccEEEE--e-eeC--CeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTF-------QSEGPRPVMVS--R-SRA--GFTLNIVDTPGLIEGGYVNYHAIQLIK   68 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~-------~~~t~~~~~~~--~-~~~--g~~v~iiDTPG~~~~~~~~~~~~~~i~   68 (265)
                      +|.+|||||||+|.+.|.........       ...|.......  . ..+  ...+.+|||||..+...       ...
T Consensus        20 vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~   92 (198)
T 3t1o_A           20 YGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA-------SRK   92 (198)
T ss_dssp             ECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH-------HHH
T ss_pred             ECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH-------HHH
Confidence            69999999999999887643211100       00011011111  1 222  34689999999754321       111


Q ss_pred             HHHhcCCccEEEEEEecCCcCCCHHHHHHHHHH----HHhcCcCcCCcEEEEEeCccCC
Q 024586           69 RFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAI----TDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        69 ~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l----~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      .++  ..+|++++|++++..+ ...+...++.+    ..........|+++|+||+|+.
T Consensus        93 ~~~--~~~d~~i~v~D~~~~~-~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~  148 (198)
T 3t1o_A           93 LIL--RGVDGIVFVADSAPNR-LRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLP  148 (198)
T ss_dssp             HHT--TTCCEEEEEEECCGGG-HHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTST
T ss_pred             HHH--hcCCEEEEEEECCcch-hhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcc
Confidence            222  4789999998877322 22223333333    2221112348999999999994

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.32  E-value=9.2e-12  Score=101.05  Aligned_cols=105  Identities=17%  Similarity=0.027  Sum_probs=68.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|++++....  .... .|.........+++.  .+.+|||||.....        .++      .+|+
T Consensus        26 vG~~~vGKSsL~~~~~~~~~~--~~~~-~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~~------~~~~   88 (184)
T 3ihw_A           26 VGNLSSGKSALVHRYLTGTYV--QEES-PEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ--------FAA------WVDA   88 (184)
T ss_dssp             ECCTTSCHHHHHHHHHHSSCC--CCCC-TTCEEEEEEEEETTEEEEEEEEECSSSCCHH--------HHH------HCSE
T ss_pred             ECCCCCCHHHHHHHHhcCCCC--CCcC-CCcceEEEEEEECCEEEEEEEEECCCChhhh--------eec------CCCE
Confidence            699999999999999987632  2122 233333445667775  55779999974321        222      5799


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +++|++++.......-..++..+..... ....|+++|+||+|+.
T Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~  132 (184)
T 3ihw_A           89 VVFVFSLEDEISFQTVYNYFLRLCSFRN-ASEVPMVLVGTQDAIS  132 (184)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHTTSC-GGGSCEEEEEECTTCB
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccc
Confidence            9999888753211222346666655432 1237999999999984

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.30  E-value=1e-11  Score=101.54  Aligned_cols=114  Identities=16%  Similarity=0.108  Sum_probs=67.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeE--EEEEeCCCCCCC-CCCcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFT--LNIVDTPGLIEG-GYVNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~--v~iiDTPG~~~~-~~~~~~~~~~i~~~l~~~~~d   77 (265)
                      +|.+|||||||+|.+.|......+...+++.........++|..  +.++||+|.... ......+   .      ..+|
T Consensus        12 vG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~---~------~~~~   82 (192)
T 2cjw_A           12 IGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHC---M------QVGD   82 (192)
T ss_dssp             ECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGH---H------HHCS
T ss_pred             ECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhh---c------ccCC
Confidence            69999999999999997543233333333444444556677764  578999997431 1111111   1      2568


Q ss_pred             EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      ++++|+++++.........++..+.+.... ...|+++|.||+|+..
T Consensus        83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~-~~~piilV~NK~Dl~~  128 (192)
T 2cjw_A           83 AYLIVYSITDRASFEKASELRIQLRRARQT-EDIPIILVGNKSDLVR  128 (192)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECTTCGG
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCeEEEEEechhhhc
Confidence            999998887532112223455555554221 1278999999999853

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.30  E-value=2.2e-11  Score=113.66  Aligned_cols=108  Identities=14%  Similarity=0.129  Sum_probs=69.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcc------cccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAV------TVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK   74 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~------~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~   74 (265)
                      +|..++|||||+|+|++....      ......+.|..........++..+.+|||||..       ++...+...+  .
T Consensus        25 iG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~-------~~~~~~~~~~--~   95 (482)
T 1wb1_A           25 FGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHA-------DLIRAVVSAA--D   95 (482)
T ss_dssp             EECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHH-------HHHHHHHHHT--T
T ss_pred             ECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChH-------HHHHHHHHHH--h
Confidence            589999999999999997611      112222344443334456688999999999972       3333443333  4


Q ss_pred             CccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           75 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        75 ~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      .+|++++|++.+. ....+..+.+..+... +    .|.++|+||+|+.
T Consensus        96 ~aD~~ilVvda~~-g~~~qt~e~l~~~~~~-~----ip~IvviNK~Dl~  138 (482)
T 1wb1_A           96 IIDLALIVVDAKE-GPKTQTGEHMLILDHF-N----IPIIVVITKSDNA  138 (482)
T ss_dssp             SCCEEEEEEETTT-CSCHHHHHHHHHHHHT-T----CCBCEEEECTTSS
T ss_pred             hCCEEEEEEecCC-CccHHHHHHHHHHHHc-C----CCEEEEEECCCcc
Confidence            7899999977654 3556666666655543 2    6779999999995

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.28  E-value=4.6e-12  Score=115.40  Aligned_cols=83  Identities=22%  Similarity=0.231  Sum_probs=40.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEee---------------------eC---CeEEEEEeCCCCCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS---------------------RA---GFTLNIVDTPGLIEG   56 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~---------------------~~---g~~v~iiDTPG~~~~   56 (265)
                      +|.+|||||||+|+|+|.. +.+++++++|..+......                     ++   +.++.+|||||+..+
T Consensus         6 vG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG~~~~   84 (397)
T 1wxq_A            6 VGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGLVPG   84 (397)
T ss_dssp             EECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-----
T ss_pred             ECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCCcccc
Confidence            6999999999999999988 5677777777766554321                     12   257899999999653


Q ss_pred             CCCcHHHHHHHHHHH-hcCCccEEEEEEecCC
Q 024586           57 GYVNYHAIQLIKRFL-LNKTIDVLLYVDRLDV   87 (265)
Q Consensus        57 ~~~~~~~~~~i~~~l-~~~~~d~iL~V~~~d~   87 (265)
                      ....+.   ....++ ..+.+|++++|++...
T Consensus        85 a~~~~~---l~~~~l~~i~~aD~il~VvD~~~  113 (397)
T 1wxq_A           85 AHEGRG---LGNKFLDDLRMASALIHVVDATG  113 (397)
T ss_dssp             -------------CCCSSTTCSEEEEEEETTC
T ss_pred             hhhhhh---HHHHHHHHHhcCCEEEEEEeccc
Confidence            222111   112232 2258999999987754

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=98.93  E-value=3.5e-13  Score=110.84  Aligned_cols=109  Identities=17%  Similarity=0.128  Sum_probs=68.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|+|++...  .....+++..........++.  .+.+|||||..+.....       ..++  ..+|+
T Consensus        36 ~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------~~~~--~~~d~  104 (204)
T 3th5_A           36 VGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR-------PLSY--PQTDV  104 (204)
Confidence            69999999999999998653  222233333333333344444  45699999975432111       1111  36799


Q ss_pred             EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +++|++++... +......++..+....+   ..|+++|+||+|+.
T Consensus       105 iilv~D~~~~~s~~~~~~~~~~~l~~~~~---~~piilv~NK~Dl~  147 (204)
T 3th5_A          105 FLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLR  147 (204)
Confidence            99997766432 33333355666655433   37999999999995

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.27  E-value=3.8e-11  Score=110.74  Aligned_cols=110  Identities=12%  Similarity=0.077  Sum_probs=69.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccC------------------------------CCCCCCccEEEEeeeCCeEEEEEeC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVST------------------------------FQSEGPRPVMVSRSRAGFTLNIVDT   50 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~------------------------------~~~~t~~~~~~~~~~~g~~v~iiDT   50 (265)
                      +|.+++|||||+|+|++........                              ..+.|...........+..+.+|||
T Consensus        23 iG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~~~~iiDT  102 (439)
T 3j2k_7           23 IGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDA  102 (439)
T ss_pred             EeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCeEEEEEEC
Confidence            5999999999999997653211110                              1234444445556678889999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCC------HHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           51 PGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVD------NLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~------~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ||..       ++...+...+  ..+|++|+|++.+..-+.      .+..+.+..+... +.   +++++|+||+|+.
T Consensus       103 PGh~-------~f~~~~~~~~--~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~-~v---~~iIvviNK~Dl~  168 (439)
T 3j2k_7          103 PGHK-------SFVPNMIGGA--SQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA-GV---KHLIVLINKMDDP  168 (439)
T ss_pred             CChH-------HHHHHHHhhH--hhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHc-CC---CeEEEEeecCCCc
Confidence            9973       2333333332  378999999776642121      3444454444432 21   3499999999984

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.27  E-value=2.4e-11  Score=110.82  Aligned_cols=110  Identities=15%  Similarity=0.140  Sum_probs=66.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCC---------CccEE----------EEeeeCCeEEEEEeCCCCCCCCCCcH
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEG---------PRPVM----------VSRSRAGFTLNIVDTPGLIEGGYVNY   61 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t---------~~~~~----------~~~~~~g~~v~iiDTPG~~~~~~~~~   61 (265)
                      +|.+|+|||||+|+|++........+...+         .....          .........+.+|||||..       
T Consensus        14 vG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~-------   86 (403)
T 3sjy_A           14 VGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHE-------   86 (403)
T ss_dssp             ECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCG-------
T ss_pred             ECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcH-------
Confidence            599999999999999995421111100000         00000          0001122689999999963       


Q ss_pred             HHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           62 HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        62 ~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      .+...+...+  ..+|++++|++.+......+..+.+..+... +.   +|+++|+||+|+.
T Consensus        87 ~~~~~~~~~~--~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~---~~iivviNK~Dl~  142 (403)
T 3sjy_A           87 VLMATMLSGA--ALMDGAILVVAANEPFPQPQTREHFVALGII-GV---KNLIIVQNKVDVV  142 (403)
T ss_dssp             GGHHHHHHHH--TTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGS
T ss_pred             HHHHHHHHHH--hhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CC---CCEEEEEECcccc
Confidence            2223333333  4789999997776532255666666655544 22   5899999999985

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.27  E-value=2.6e-11  Score=118.02  Aligned_cols=118  Identities=20%  Similarity=0.313  Sum_probs=74.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEE-------------------------------------------
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVS-------------------------------------------   37 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~-------------------------------------------   37 (265)
                      +|.+++|||||+|+|+|....+.+.. .+|..+....                                           
T Consensus        57 vG~~saGKSSllnaL~g~~~LP~g~g-~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g~~~~i  135 (772)
T 3zvr_A           57 VGGQSAGKSSVLENFVGRDFLPRGSG-IVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGI  135 (772)
T ss_dssp             EECTTTCHHHHHHHHHSSCCSCCSSS-CSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHCSTTCC
T ss_pred             ECCCCCcHHHHHHHHhCCCccCcCCc-cccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhcCCCCcc
Confidence            59999999999999999876444432 2343322211                                           


Q ss_pred             --------ee-eCCeEEEEEeCCCCCCCCC--Cc----HHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHH-HHHHHH
Q 024586           38 --------RS-RAGFTLNIVDTPGLIEGGY--VN----YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDK-QITRAI  101 (265)
Q Consensus        38 --------~~-~~g~~v~iiDTPG~~~~~~--~~----~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~-~~l~~l  101 (265)
                              .. .+..+++++||||+.....  ..    +...+.+..++. ..+|++|+|++.+. .+...+. .+++.+
T Consensus       136 s~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~-~~aDlIL~VVDAs~-~~~~~d~l~ll~~L  213 (772)
T 3zvr_A          136 SPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT-KENCLILAVSPANS-DLANSDALKIAKEV  213 (772)
T ss_dssp             CSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHT-STTEEEEEEEETTS-CSSSCHHHHHHHHH
T ss_pred             cccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHh-cCCcEEEEEEcCCC-CcchhHHHHHHHHH
Confidence                    10 1233578999999987321  11    234444555554 67899999965543 2444554 565555


Q ss_pred             HHhcCcCcCCcEEEEEeCccCCCCC
Q 024586          102 TDNFGEQIWKRALIVLTHAQLSLPD  126 (265)
Q Consensus       102 ~~~~g~~~~~~~ivV~tk~D~~~~~  126 (265)
                      ...     .+|+++|+||+|+.+..
T Consensus       214 ~~~-----g~pvIlVlNKiDlv~~~  233 (772)
T 3zvr_A          214 DPQ-----GQRTIGVITKLDLMDEG  233 (772)
T ss_dssp             CTT-----CSSEEEEEECTTSSCTT
T ss_pred             Hhc-----CCCEEEEEeCcccCCcc
Confidence            433     28999999999997543

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.25  E-value=2.3e-11  Score=113.59  Aligned_cols=111  Identities=14%  Similarity=0.125  Sum_probs=70.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCccc------------------------------ccCCCCCCCccEEEEeeeCCeEEEEEeC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVT------------------------------VSTFQSEGPRPVMVSRSRAGFTLNIVDT   50 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~------------------------------~~~~~~~t~~~~~~~~~~~g~~v~iiDT   50 (265)
                      +|.+|+|||||+|+|++.....                              .....+.|...........+..+.+|||
T Consensus        39 iG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDT  118 (483)
T 3p26_A           39 LGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANFTIVDA  118 (483)
T ss_dssp             ESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSCEEEEECC
T ss_pred             ECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCceEEEEEC
Confidence            5999999999999998652110                              0111244555555666778889999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcC------CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           51 PGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR------VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r------~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      ||..+       +...+...+  ..+|++|+|++.+...      +.....+.+..+.. .+.   +++|+|+||+|+.+
T Consensus       119 PG~~~-------f~~~~~~~~--~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~~---~~iIvviNK~Dl~~  185 (483)
T 3p26_A          119 PGHRD-------FVPNAIMGI--SQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGI---HNLIIAMNKMDNVD  185 (483)
T ss_dssp             CCCGG-------GHHHHHHHH--TTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TTC---CCEEEEEECGGGGT
T ss_pred             CCcHH-------HHHHHHHhh--hhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cCC---CcEEEEEECcCccc
Confidence            99843       223333333  4789999998776421      22344444444433 222   57999999999953

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.24  E-value=4.9e-11  Score=97.68  Aligned_cols=112  Identities=17%  Similarity=0.098  Sum_probs=68.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|.|+|....... .+..+.........++|.  .+.+|||||..........       +.  ..+|+
T Consensus        11 vG~~g~GKSTLl~~l~~~~~~~~~-~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~-------~~--~~~~~   80 (199)
T 2f9l_A           11 IGDSGVGKSNLLSRFTRNEFNLES-KSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSA-------YY--RGAVG   80 (199)
T ss_dssp             ESSTTSSHHHHHHHHHHSCCCC----CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHH-------HH--TTCSE
T ss_pred             ECcCCCCHHHHHHHHhcCCCCCCC-CCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHH-------HH--hcCCE
Confidence            699999999999999997642221 122233444556667775  4578999997543222211       11  36799


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      +++|+++........-..++..+......  ..++++|+||+|+..
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~i~~v~nK~Dl~~  124 (199)
T 2f9l_A           81 ALLVYDIAKHLTYENVERWLKELRDHADS--NIVIMLVGNKSDLRH  124 (199)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGG
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEECccccc
Confidence            99997766421111122344555443222  378999999999854

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.23  E-value=8.7e-12  Score=100.96  Aligned_cols=111  Identities=18%  Similarity=0.114  Sum_probs=60.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCC-ccEEEEeee-----CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGP-RPVMVSRSR-----AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK   74 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~-~~~~~~~~~-----~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~   74 (265)
                      +|.+|||||||+|.|.+......+...++.. .........     ....+.+|||||..+.....       ..++  .
T Consensus         8 vG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------~~~~--~   78 (184)
T 2zej_A            8 VGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTH-------PHFM--T   78 (184)
T ss_dssp             ESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTS-------HHHH--H
T ss_pred             ECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhh-------HHHc--c
Confidence            6999999999999999963222222222211 111112221     34578999999973221111       1122  2


Q ss_pred             CccEEEEEEecCCc-CCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           75 TIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        75 ~~d~iL~V~~~d~~-r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +.|++++|++++.. +....-..++..+.....   ..|+++|+||+|+.
T Consensus        79 ~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~  125 (184)
T 2zej_A           79 QRALYLAVYDLSKGQAEVDAMKPWLFNIKARAS---SSPVILVGTHLDVS  125 (184)
T ss_dssp             HSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCT---TCEEEEEEECGGGC
T ss_pred             CCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCC---CCcEEEEEECCCcc
Confidence            56899999887652 111122345555544322   27899999999984

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.23  E-value=1.5e-11  Score=112.19  Aligned_cols=108  Identities=13%  Similarity=0.068  Sum_probs=71.4

Q ss_pred             CCCCCCCHHHHHHHHhCC---C----ccc---ccC------CCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHH
Q 024586            1 MGKGGVGKSSTVNSIIGE---K----AVT---VST------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAI   64 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~---~----~~~---~~~------~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~   64 (265)
                      +|.+|+|||||+|+|++.   .    .+.   ..+      ..+.|...........+..+.+|||||..+.       .
T Consensus        17 iG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f-------~   89 (405)
T 2c78_A           17 IGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY-------I   89 (405)
T ss_dssp             ECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG-------H
T ss_pred             EcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH-------H
Confidence            599999999999999973   1    000   000      1234444444555667789999999998532       2


Q ss_pred             HHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCc-EEEEEeCccCC
Q 024586           65 QLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR-ALIVLTHAQLS  123 (265)
Q Consensus        65 ~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~-~ivV~tk~D~~  123 (265)
                      ..+...+  ..+|++|+|++.+. .......+++..+... +    .| +++|+||+|+.
T Consensus        90 ~~~~~~~--~~aD~~ilVvda~~-g~~~qt~~~l~~~~~~-~----ip~iivviNK~Dl~  141 (405)
T 2c78_A           90 KNMITGA--AQMDGAILVVSAAD-GPMPQTREHILLARQV-G----VPYIVVFMNKVDMV  141 (405)
T ss_dssp             HHHHHHH--TTCSSEEEEEETTT-CCCHHHHHHHHHHHHT-T----CCCEEEEEECGGGC
T ss_pred             HHHHHHH--HHCCEEEEEEECCC-CCcHHHHHHHHHHHHc-C----CCEEEEEEECcccc
Confidence            2233222  47899999977664 3456666676666543 2    45 89999999985

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.23  E-value=8.7e-12  Score=109.72  Aligned_cols=109  Identities=17%  Similarity=0.110  Sum_probs=71.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEE--EEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTL--NIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v--~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|+|||||+|.+++...  .....+++..........++..+  .+|||||.........       .+  ...+|+
T Consensus       161 ~G~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-------~~--~~~~d~  229 (332)
T 2wkq_A          161 VGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRP-------LS--YPQTDV  229 (332)
T ss_dssp             EESTTSSHHHHHHHHHHSCC--CCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGG-------GG--CTTCSE
T ss_pred             ECCCCCChHHHHHHHHhCCC--CcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHH-------Hh--ccCCCE
Confidence            59999999999999997653  33334444444444556666655  5999999754322111       11  147899


Q ss_pred             EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +++|++++... +......+++.+....+   ..|+++|+||+|+.
T Consensus       230 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~  272 (332)
T 2wkq_A          230 FLICFSLVSPASFHHVRAKWYPEVRHHCP---NTPIILVGTKLDLR  272 (332)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSCEEEEEECHHHH
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhhCC---CCcEEEEEEchhcc
Confidence            99998876522 22222245666666543   38999999999984

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.20  E-value=1e-10  Score=107.76  Aligned_cols=109  Identities=16%  Similarity=0.125  Sum_probs=69.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCccccc----------CCC----------------------CCCCccEEEEeeeCCeEEEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVS----------TFQ----------------------SEGPRPVMVSRSRAGFTLNIV   48 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~----------~~~----------------------~~t~~~~~~~~~~~g~~v~ii   48 (265)
                      +|.+|+|||||+|+|++.......          ...                      +.|...........+..+.+|
T Consensus        30 iG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~~~~~ii  109 (434)
T 1zun_B           30 CGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAKRKFIIA  109 (434)
T ss_dssp             ECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSSEEEEEE
T ss_pred             EECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCCceEEEE
Confidence            599999999999999875421111          011                      123333333455577899999


Q ss_pred             eCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           49 DTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        49 DTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ||||..+       +...+...+  ..+|++|+|++.+. .......+.+..+... +.   +++++|+||+|+.
T Consensus       110 DtpGh~~-------f~~~~~~~~--~~aD~~ilVvDa~~-g~~~qt~~~l~~~~~~-~~---~~iIvviNK~Dl~  170 (434)
T 1zun_B          110 DTPGHEQ-------YTRNMATGA--STCDLAIILVDARY-GVQTQTRRHSYIASLL-GI---KHIVVAINKMDLN  170 (434)
T ss_dssp             ECCCSGG-------GHHHHHHHH--TTCSEEEEEEETTT-CSCHHHHHHHHHHHHT-TC---CEEEEEEECTTTT
T ss_pred             ECCChHH-------HHHHHHHHH--hhCCEEEEEEECCC-CCcHHHHHHHHHHHHc-CC---CeEEEEEEcCcCC
Confidence            9999742       122222222  48899999987764 3455666666555433 21   4799999999985

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.20  E-value=8.4e-11  Score=96.72  Aligned_cols=114  Identities=20%  Similarity=0.221  Sum_probs=63.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC-cccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCc---HHHHHHHHHHHh-cCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK-AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN---YHAIQLIKRFLL-NKT   75 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~-~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~---~~~~~~i~~~l~-~~~   75 (265)
                      +|.+|+|||||+|+|+|.. ...+++..++|....  ...+++ .+.++||||+.+.....   +.+...+..++. ...
T Consensus        32 vG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~--~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (210)
T 1pui_A           32 AGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLIN--LFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQS  108 (210)
T ss_dssp             EECTTSSHHHHHTTTCCC-------------CCEE--EEEEET-TEEEEECCCCC------CCHHHHHHHHHHHHHHCTT
T ss_pred             ECCCCCCHHHHHHHHhCCCccccccCCCccceeeE--EEEecC-CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhc
Confidence            6999999999999999976 223343344443322  222333 57799999986532111   122233333432 246


Q ss_pred             ccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           76 IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        76 ~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|.+++|+++.. ..+..+.++.+.+...     ..++++|.||+|+.
T Consensus       109 ~~~~~~v~d~~~-~~~~~~~~~~~~~~~~-----~~~~~~v~nK~D~~  150 (210)
T 1pui_A          109 LQGLVVLMDIRH-PLKDLDQQMIEWAVDS-----NIAVLVLLTKADKL  150 (210)
T ss_dssp             EEEEEEEEETTS-CCCHHHHHHHHHHHHT-----TCCEEEEEECGGGS
T ss_pred             ccEEEEEEECCC-CCchhHHHHHHHHHHc-----CCCeEEEEecccCC
Confidence            899999977764 2444444555544432     27889999999974

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.19  E-value=4.5e-11  Score=112.64  Aligned_cols=108  Identities=13%  Similarity=0.143  Sum_probs=74.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCccc---------------ccC------CCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVT---------------VST------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV   59 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~---------------~~~------~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~   59 (265)
                      +|.+|+|||||+|+|++...+.               +.+      ..+.|.........+.+..+++|||||+.+..  
T Consensus        19 iG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~~df~--   96 (528)
T 3tr5_A           19 ISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGHADFT--   96 (528)
T ss_dssp             EECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCSTTCC--
T ss_pred             ECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCchhHH--
Confidence            5899999999999997321110               111      12345555566777889999999999986543  


Q ss_pred             cHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           60 NYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        60 ~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                       ..    ..+++  ..+|++|+|++... .....+..++..+....     .|+++|+||+|+.
T Consensus        97 -~~----~~~~l--~~aD~allVvDa~~-g~~~~t~~~~~~~~~~~-----iPiivviNK~Dl~  147 (528)
T 3tr5_A           97 -ED----TYRTL--TAVDSALMVIDAAK-GVEPRTIKLMEVCRLRH-----TPIMTFINKMDRD  147 (528)
T ss_dssp             -HH----HHHGG--GGCSEEEEEEETTT-CSCHHHHHHHHHHHTTT-----CCEEEEEECTTSC
T ss_pred             -HH----HHHHH--HhCCEEEEEEeCCC-CCCHHHHHHHHHHHHcC-----CCEEEEEeCCCCc
Confidence             22    22222  37899999977654 36677777777665542     7999999999984

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.18  E-value=1.9e-10  Score=103.76  Aligned_cols=97  Identities=15%  Similarity=0.168  Sum_probs=67.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+++|||||+|+|+.         .+.|...........+..+.+|||||..+.   .......+      ..+|+++
T Consensus        27 iG~~d~GKSTL~~~L~~---------~giTi~~~~~~~~~~~~~i~iiDtPGh~~f---~~~~~~~~------~~aD~ai   88 (370)
T 2elf_A           27 IGTEKSGRTSLAANLGK---------KGTSSDITMYNNDKEGRNMVFVDAHSYPKT---LKSLITAL------NISDIAV   88 (370)
T ss_dssp             EESTTSSHHHHHHTTSE---------EEEESSSEEEEECSSSSEEEEEECTTTTTC---HHHHHHHH------HTCSEEE
T ss_pred             ECCCCCCHHHHHHHHHh---------CCEEEEeeEEEEecCCeEEEEEECCChHHH---HHHHHHHH------HHCCEEE
Confidence            58999999999999991         123444445566777889999999998542   12222222      3789999


Q ss_pred             EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcE-EEEEe-CccC
Q 024586           81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRA-LIVLT-HAQL  122 (265)
Q Consensus        81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~-ivV~t-k~D~  122 (265)
                      +|++ +. ....+..+.+..+... +    .+. ++|+| |+|+
T Consensus        89 lVvd-~~-g~~~qt~e~~~~~~~~-~----i~~~ivvvNNK~Dl  125 (370)
T 2elf_A           89 LCIP-PQ-GLDAHTGECIIALDLL-G----FKHGIIALTRSDST  125 (370)
T ss_dssp             EEEC-TT-CCCHHHHHHHHHHHHT-T----CCEEEEEECCGGGS
T ss_pred             EEEc-CC-CCcHHHHHHHHHHHHc-C----CCeEEEEEEeccCC
Confidence            9976 43 3556666666655543 2    455 89999 9998

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.18  E-value=2.8e-10  Score=103.99  Aligned_cols=110  Identities=15%  Similarity=0.086  Sum_probs=66.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCccccc--CCCCCCCccEEEEeee---------------C--------CeEEEEEeCCCCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVS--TFQSEGPRPVMVSRSR---------------A--------GFTLNIVDTPGLIE   55 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~--~~~~~t~~~~~~~~~~---------------~--------g~~v~iiDTPG~~~   55 (265)
                      +|..++|||||+|+|+|.......  ...+.|.........+               .        ...+.+|||||.. 
T Consensus        16 iG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~-   94 (410)
T 1kk1_A           16 VGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHE-   94 (410)
T ss_dssp             ECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEECSSHH-
T ss_pred             ECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEECCChH-
Confidence            599999999999999986432111  1123344332211111               1        1679999999962 


Q ss_pred             CCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           56 GGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        56 ~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                            ++...+.+.+  ..+|++++|++.+..-...+..+.+..+... +.   +++++|+||+|+.
T Consensus        95 ------~f~~~~~~~~--~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~-~~---~~iivviNK~Dl~  150 (410)
T 1kk1_A           95 ------ALMTTMLAGA--SLMDGAILVIAANEPCPRPQTREHLMALQII-GQ---KNIIIAQNKIELV  150 (410)
T ss_dssp             ------HHHHHHHHCG--GGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGS
T ss_pred             ------HHHHHHHhhh--hhCCEEEEEEECCCCCCChhHHHHHHHHHHc-CC---CcEEEEEECccCC
Confidence                  3333333222  3679999997766421245556666555433 22   6899999999985

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.18  E-value=3.3e-10  Score=103.62  Aligned_cols=115  Identities=18%  Similarity=0.258  Sum_probs=75.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC-eEEEEEeCCCCCCCCC----CcHHHHHHHHHHHhcCC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-FTLNIVDTPGLIEGGY----VNYHAIQLIKRFLLNKT   75 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g-~~v~iiDTPG~~~~~~----~~~~~~~~i~~~l~~~~   75 (265)
                      ||.+|||||||+|+|.+... .++.++.+|..+......+++ ..+.++||||+.+...    .....++.+      ..
T Consensus       163 VG~~gAGKSTLL~~Lsg~~~-~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~------er  235 (416)
T 1udx_A          163 VGYPNAGKSSLLAAMTRAHP-KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHI------AR  235 (416)
T ss_dssp             ECCGGGCHHHHHHHHCSSCC-EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHH------TS
T ss_pred             ECCCCCcHHHHHHHHHcCCc-cccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHH------HH
Confidence            69999999999999999865 455666677777776777665 7899999999975421    122333322      36


Q ss_pred             ccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           76 IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        76 ~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ++.+|+|++++ ......-....+.+..+...-..+|.++|+||+|+.
T Consensus       236 a~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~  282 (416)
T 1udx_A          236 TRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLL  282 (416)
T ss_dssp             SSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTS
T ss_pred             HHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChh
Confidence            89999998775 221111122333333321111137899999999984

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.17  E-value=1.8e-10  Score=93.96  Aligned_cols=112  Identities=18%  Similarity=0.101  Sum_probs=67.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEE--EEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTL--NIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v--~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|.|.|...... ..+..+.........++|..+  .++||||...........   .      ..+++
T Consensus        35 vG~~g~GKSTLl~~l~~~~~~~~-~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~---~------~~~~~  104 (191)
T 1oix_A           35 IGDSGVGKSNLLSRFTRNEFNLE-SKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAY---Y------RGAVG  104 (191)
T ss_dssp             EECTTSSHHHHHHHHHHSCCCCS-CCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHH---H------TTCCE
T ss_pred             ECcCCCCHHHHHHHHhcCCCCCC-CCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHH---h------hcCCE
Confidence            69999999999999999764221 112223333445666778655  569999986433222211   1      36789


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      +++|++.........-..+++.+.+...  ...++++|+||+|+..
T Consensus       105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~i~~v~nK~Dl~~  148 (191)
T 1oix_A          105 ALLVYDIAKHLTYENVERWLKELRDHAD--SNIVIMLVGNKSDLRH  148 (191)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGG
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccccc
Confidence            9999776542111111234444444322  2378999999999853

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.17  E-value=1.9e-10  Score=108.56  Aligned_cols=112  Identities=14%  Similarity=0.103  Sum_probs=68.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCC-CccEEE------Eeee----CCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEG-PRPVMV------SRSR----AGFTLNIVDTPGLIEGGYVNYHAIQLIKR   69 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t-~~~~~~------~~~~----~g~~v~iiDTPG~~~~~~~~~~~~~~i~~   69 (265)
                      +|.+|||||||+|+|++....  ....++. ......      ....    .+..+.+|||||..........+   ++ 
T Consensus        47 vG~~~vGKSSLl~~l~~~~~~--~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~---l~-  120 (535)
T 3dpu_A           47 IGDGMAGKTSLLKQLIGETFD--PKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFF---MT-  120 (535)
T ss_dssp             ESSSCSSHHHHHHHHHC-------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHH---HH-
T ss_pred             ECCCCCCHHHHHHHHhcCCCC--CCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHH---cc-
Confidence            699999999999999997632  2222221 111111      1112    25789999999975544333322   22 


Q ss_pred             HHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCC
Q 024586           70 FLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD  129 (265)
Q Consensus        70 ~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~  129 (265)
                           .+|++++|+++.  .. +....++..+....+.   .|+++|+||+|+....+.+
T Consensus       121 -----~~d~ii~V~D~s--~~-~~~~~~~~~l~~~~~~---~pvilV~NK~Dl~~~~~v~  169 (535)
T 3dpu_A          121 -----RSSVYMLLLDSR--TD-SNKHYWLRHIEKYGGK---SPVIVVMNKIDENPSYNIE  169 (535)
T ss_dssp             -----SSEEEEEEECGG--GG-GGHHHHHHHHHHHSSS---CCEEEEECCTTTCTTCCCC
T ss_pred             -----CCcEEEEEEeCC--Cc-hhHHHHHHHHHHhCCC---CCEEEEEECCCcccccccC
Confidence                 689999996554  33 4456777888776542   7999999999996544433

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.14  E-value=4.6e-11  Score=114.44  Aligned_cols=111  Identities=14%  Similarity=0.113  Sum_probs=70.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccC------------------------------CCCCCCccEEEEeeeCCeEEEEEeC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVST------------------------------FQSEGPRPVMVSRSRAGFTLNIVDT   50 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~------------------------------~~~~t~~~~~~~~~~~g~~v~iiDT   50 (265)
                      +|.+|+|||||+|+|++........                              ..+.|...........+..+.||||
T Consensus       173 vG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~~~~~iiDT  252 (611)
T 3izq_1          173 LGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANFTIVDA  252 (611)
T ss_dssp             ECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSSCEEEEEEC
T ss_pred             EECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCCceEEEEEC
Confidence            5999999999999999874322110                              1244555555566677889999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcC------CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           51 PGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR------VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r------~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      ||+.+       +...+...  ...+|++|+|++.+...      ........+..+.. .+.   +++|+|+||+|+.+
T Consensus       253 PG~e~-------f~~~~~~~--~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~-lgi---~~iIVVvNKiDl~~  319 (611)
T 3izq_1          253 PGHRD-------FVPNAIMG--ISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGI---HNLIIAMNKMDNVD  319 (611)
T ss_dssp             CSSSC-------HHHHHTTT--SSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT-TTC---CEEEEEEECTTTTT
T ss_pred             CCCcc-------cHHHHHHH--HhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH-cCC---CeEEEEEecccccc
Confidence            99843       22222221  25799999997665310      12334444443333 221   56999999999853

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.14  E-value=2.6e-10  Score=110.78  Aligned_cols=108  Identities=16%  Similarity=0.151  Sum_probs=71.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCccc-----------ccC------CCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVT-----------VST------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA   63 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~-----------~~~------~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~   63 (265)
                      +|.+|+|||||+|+|++.....           +.+      ..+.|.........+++..+++|||||+.+..   .+.
T Consensus        16 vG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~---~~~   92 (693)
T 2xex_A           16 MAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDFT---VEV   92 (693)
T ss_dssp             ECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSCC---HHH
T ss_pred             ECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcchH---HHH
Confidence            5999999999999999421100           111      11234444445667788999999999996532   233


Q ss_pred             HHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           64 IQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        64 ~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ...++      .+|++|+|++... .....+...++.+.+..     .|+++|+||+|+.
T Consensus        93 ~~~l~------~aD~~llVvDa~~-g~~~~~~~~~~~~~~~~-----~p~ilviNK~Dl~  140 (693)
T 2xex_A           93 ERSLR------VLDGAVTVLDAQS-GVEPQTETVWRQATTYG-----VPRIVFVNKMDKL  140 (693)
T ss_dssp             HHHHH------HCSEEEEEEETTT-BSCHHHHHHHHHHHHTT-----CCEEEEEECTTST
T ss_pred             HHHHH------HCCEEEEEECCCC-CCcHHHHHHHHHHHHcC-----CCEEEEEECCCcc
Confidence            33333      5799999977654 46667777777665532     7999999999985

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.11  E-value=1e-09  Score=100.20  Aligned_cols=111  Identities=17%  Similarity=0.092  Sum_probs=65.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccC--CCCCCCccEEEEeee---------------C--------CeEEEEEeCCCCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVST--FQSEGPRPVMVSRSR---------------A--------GFTLNIVDTPGLIE   55 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~--~~~~t~~~~~~~~~~---------------~--------g~~v~iiDTPG~~~   55 (265)
                      +|..++|||||+|+|+|........  ..+.|.........+               .        ...+.+|||||.  
T Consensus        14 iG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh--   91 (408)
T 1s0u_A           14 VGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGH--   91 (408)
T ss_dssp             ESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEECSSH--
T ss_pred             EcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEECCCH--
Confidence            5999999999999999864221111  122233322111111               1        167999999996  


Q ss_pred             CCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           56 GGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        56 ~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                           +.+...+.+  ....+|++++|++.+..-...+..+.+..+.. .+.   +|+++|+||+|+.+
T Consensus        92 -----~~f~~~~~~--~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-l~~---~~iivv~NK~Dl~~  149 (408)
T 1s0u_A           92 -----ETLMATMLS--GASLMDGAILVIAANEPCPQPQTKEHLMALEI-LGI---DKIIIVQNKIDLVD  149 (408)
T ss_dssp             -----HHHHHHHHT--TCSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-TTC---CCEEEEEECTTSSC
T ss_pred             -----HHHHHHHHH--hHhhCCEEEEEEECCCCCCCchhHHHHHHHHH-cCC---CeEEEEEEccCCCC
Confidence                 233332221  12467999999877642124555555555443 332   58999999999964

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.11  E-value=1.3e-10  Score=106.35  Aligned_cols=117  Identities=20%  Similarity=0.252  Sum_probs=62.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCC-----CCCCCccEEEEe--eeCC--eEEEEEeCCCCCCCCCC---cHHHHHHH-
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTF-----QSEGPRPVMVSR--SRAG--FTLNIVDTPGLIEGGYV---NYHAIQLI-   67 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~-----~~~t~~~~~~~~--~~~g--~~v~iiDTPG~~~~~~~---~~~~~~~i-   67 (265)
                      +|++|+|||||+|+|+|......+..     ...|........  ...+  ..++++||||++.....   .....+.+ 
T Consensus        37 vG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~  116 (418)
T 2qag_C           37 VGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYID  116 (418)
T ss_dssp             ECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHHHHHHHH
Confidence            69999999999999999764222110     011111111111  1223  26899999999754211   11111111 


Q ss_pred             ---HHHH-----------hcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           68 ---KRFL-----------LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        68 ---~~~l-----------~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                         ..++           ..+.+|++||++......++..+..+++.+..      ..++|+|+||+|+.
T Consensus       117 ~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~------~v~iIlVinK~Dll  180 (418)
T 2qag_C          117 SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTL  180 (418)
T ss_dssp             HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT------TSEEEEEEESTTSS
T ss_pred             HHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc------cCcEEEEEEcccCc
Confidence               1111           23456788888543323588888778877753      27899999999985

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.09  E-value=5.3e-10  Score=105.36  Aligned_cols=108  Identities=14%  Similarity=0.113  Sum_probs=68.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCccc---------------ccC------CCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVT---------------VST------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV   59 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~---------------~~~------~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~   59 (265)
                      +|.+|+|||||+|+|++.....               +.+      ..+.|.........+.+..+++|||||..+..  
T Consensus        19 iG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~~df~--   96 (529)
T 2h5e_A           19 ISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFS--   96 (529)
T ss_dssp             EECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCSTTCC--
T ss_pred             ECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCChhHH--
Confidence            5899999999999999642111               000      11122233344566788999999999996532  


Q ss_pred             cHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           60 NYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        60 ~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                       .    .+.+++  ..+|++|+|++... ........+++.+...     ..|+++|+||+|+.
T Consensus        97 -~----~~~~~l--~~aD~~IlVvDa~~-g~~~~t~~~~~~~~~~-----~ipiivviNK~Dl~  147 (529)
T 2h5e_A           97 -E----DTYRTL--TAVDCCLMVIDAAK-GVEDRTRKLMEVTRLR-----DTPILTFMNKLDRD  147 (529)
T ss_dssp             -H----HHHHGG--GGCSEEEEEEETTT-CSCHHHHHHHHHHTTT-----TCCEEEEEECTTSC
T ss_pred             -H----HHHHHH--HHCCEEEEEEeCCc-cchHHHHHHHHHHHHc-----CCCEEEEEcCcCCc
Confidence             2    223333  37899999977654 3555555555544332     27899999999984

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.09  E-value=8.2e-12  Score=117.56  Aligned_cols=108  Identities=15%  Similarity=0.136  Sum_probs=73.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR-AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVL   79 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~-~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~i   79 (265)
                      +|.+|+|||||+|+|.+..... ...++.|.+...+.... ++..+++|||||..+......       ++  ...+|++
T Consensus        10 vG~~~vGKTSLl~~L~~~~~~~-~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~-------~~--~~~aD~v   79 (537)
T 3izy_P           10 MGHVDHGKTTLLDKLRKTQVAA-MEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRA-------RG--TQVTDIV   79 (537)
T ss_dssp             EESTTTTHHHHHHHHHHHHHHH-SSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBB-------SS--SBSBSSC
T ss_pred             ECCCCCCHHHHHHHHhCCCccc-ccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHH-------HH--HccCCEE
Confidence            5999999999999999876432 23344555544444544 567899999999755432211       11  1368999


Q ss_pred             EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      ++|++.+. .......+.+..+....     .|+++|+||+|+..
T Consensus        80 ILVVDa~d-g~~~qt~e~l~~~~~~~-----vPiIVViNKiDl~~  118 (537)
T 3izy_P           80 ILVVAADD-GVMKQTVESIQHAKDAH-----VPIVLAINKCDKAE  118 (537)
T ss_dssp             EEECBSSS-CCCHHHHHHHHHHHTTT-----CCEEECCBSGGGTT
T ss_pred             EEEEECCC-CccHHHHHHHHHHHHcC-----CcEEEEEecccccc
Confidence            99976664 35566666666555432     78999999999853

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.08  E-value=3.4e-10  Score=103.04  Aligned_cols=108  Identities=14%  Similarity=0.062  Sum_probs=68.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCc------cc-c--cC------CCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHH
Q 024586            1 MGKGGVGKSSTVNSIIGEKA------VT-V--ST------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQ   65 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~------~~-~--~~------~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~   65 (265)
                      +|.+++|||||+|+|++...      +. .  .+      ..+.|...........+..+.+|||||..       ++..
T Consensus         9 iG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~-------~f~~   81 (397)
T 1d2e_A            9 IGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHA-------DYVK   81 (397)
T ss_dssp             ESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHH-------HHHH
T ss_pred             EeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChH-------HHHH
Confidence            59999999999999997411      00 0  00      11223222223344567899999999973       2333


Q ss_pred             HHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCc-EEEEEeCccCC
Q 024586           66 LIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR-ALIVLTHAQLS  123 (265)
Q Consensus        66 ~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~-~ivV~tk~D~~  123 (265)
                      .+...+  ..+|++++|++.+. ....+..+.+..+... +    .| +++|+||+|+.
T Consensus        82 ~~~~~~--~~aD~~ilVvda~~-g~~~qt~e~l~~~~~~-~----vp~iivviNK~Dl~  132 (397)
T 1d2e_A           82 NMITGT--APLDGCILVVAAND-GPMPQTREHLLLARQI-G----VEHVVVYVNKADAV  132 (397)
T ss_dssp             HHHHTS--SCCSEEEEEEETTT-CSCHHHHHHHHHHHHT-T----CCCEEEEEECGGGC
T ss_pred             HHHhhH--hhCCEEEEEEECCC-CCCHHHHHHHHHHHHc-C----CCeEEEEEECcccC
Confidence            333332  47899999987764 3455666666555443 2    45 78999999985

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.07  E-value=6.5e-11  Score=109.78  Aligned_cols=109  Identities=13%  Similarity=0.131  Sum_probs=66.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCc-cc-----------------------ccC------CCCCCCccEEEEeeeCCeEEEEEeC
Q 024586            1 MGKGGVGKSSTVNSIIGEKA-VT-----------------------VST------FQSEGPRPVMVSRSRAGFTLNIVDT   50 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~-~~-----------------------~~~------~~~~t~~~~~~~~~~~g~~v~iiDT   50 (265)
                      +|.+++|||||+|+|++... ..                       +.+      ..+.|...........+..+.+|||
T Consensus        13 iG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~~~iiDt   92 (458)
T 1f60_A           13 IGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQVTVIDA   92 (458)
T ss_dssp             EECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEEEEEEEC
T ss_pred             EcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCceEEEEEC
Confidence            58999999999999986410 00                       000      1234444444556677889999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCH-------HHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           51 PGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDN-------LDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~-------~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ||..+       +...+...+  ..+|++|+|++.+.. ...       +..+.+..+.. .+   .+++++|+||+|+.
T Consensus        93 PGh~~-------f~~~~~~~~--~~aD~~ilVvda~~g-~~~~sf~~~~qt~~~~~~~~~-~~---v~~iivviNK~Dl~  158 (458)
T 1f60_A           93 PGHRD-------FIKNMITGT--SQADCAILIIAGGVG-EFEAGISKDGQTREHALLAFT-LG---VRQLIVAVNKMDSV  158 (458)
T ss_dssp             CCCTT-------HHHHHHHSS--SCCSEEEEEEECSHH-HHHHHTCTTSHHHHHHHHHHH-TT---CCEEEEEEECGGGG
T ss_pred             CCcHH-------HHHHHHhhh--hhCCEEEEEEeCCcC-ccccccCcchhHHHHHHHHHH-cC---CCeEEEEEEccccc
Confidence            99742       223333322  488999999766531 111       33333333332 22   14599999999995

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.05  E-value=1.3e-09  Score=103.90  Aligned_cols=108  Identities=14%  Similarity=0.134  Sum_probs=61.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccc--------cC------CCCCCCccEEEEeee---CC--eEEEEEeCCCCCCCCCCcH
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTV--------ST------FQSEGPRPVMVSRSR---AG--FTLNIVDTPGLIEGGYVNY   61 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~--------~~------~~~~t~~~~~~~~~~---~g--~~v~iiDTPG~~~~~~~~~   61 (265)
                      +|..|+|||||+|+|++......        .+      ..+.|.........+   +|  ..+++|||||..+..    
T Consensus        12 iGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF~----   87 (600)
T 2ywe_A           12 IAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDFS----   87 (600)
T ss_dssp             ECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGGGH----
T ss_pred             ECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhHH----
Confidence            59999999999999986321000        00      011222222222223   23  578999999986421    


Q ss_pred             HHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           62 HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        62 ~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                         ..+.+.+  ..+|++|+|++.+. .........+......     ..|+++|+||+|+.
T Consensus        88 ---~ev~r~l--~~aD~aILVVDa~~-gv~~qt~~~~~~a~~~-----~ipiIvviNKiDl~  138 (600)
T 2ywe_A           88 ---YEVSRAL--AACEGALLLIDASQ-GIEAQTVANFWKAVEQ-----DLVIIPVINKIDLP  138 (600)
T ss_dssp             ---HHHHHHH--HTCSEEEEEEETTT-BCCHHHHHHHHHHHHT-----TCEEEEEEECTTST
T ss_pred             ---HHHHHHH--HhCCEEEEEEECCC-CccHHHHHHHHHHHHC-----CCCEEEEEeccCcc
Confidence               1223333  27899999977654 3455555554444332     27899999999984

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.05  E-value=7.2e-12  Score=113.09  Aligned_cols=116  Identities=18%  Similarity=0.136  Sum_probs=71.7

Q ss_pred             CCCCCCCHHHHHHHHhCC-----CcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcH-HHHHHHHHHHhcC
Q 024586            1 MGKGGVGKSSTVNSIIGE-----KAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY-HAIQLIKRFLLNK   74 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~-----~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~-~~~~~i~~~l~~~   74 (265)
                      +|.+|+|||||+|+|++.     ....++..+++|........  . ..+.++||||+.+.....+ ...+.+..++...
T Consensus       168 vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~--~-~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~  244 (369)
T 3ec1_A          168 VGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPL--E-SGATLYDTPGIINHHQMAHFVDARDLKIITPKR  244 (369)
T ss_dssp             ECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEEC--S-TTCEEEECCSCCCCSSGGGGSCTTTHHHHSCSS
T ss_pred             EcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEe--C-CCeEEEeCCCcCcHHHHHHHHhHHHHHHHhccc
Confidence            599999999999999997     45567777788776554432  2 2378999999987642221 1112333344446


Q ss_pred             CccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCC
Q 024586           75 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLP  125 (265)
Q Consensus        75 ~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~  125 (265)
                      .+|.++|+++....-+.. ....+..   ..+.  ..++++++||+|....
T Consensus       245 ~i~~~~~~l~~~~~~~~g-~l~~l~~---l~~~--~~~~~~v~~k~d~~~~  289 (369)
T 3ec1_A          245 EIHPRVYQLNEGQTLFFG-GLARLDY---IKGG--RRSFVCYMANELTVHR  289 (369)
T ss_dssp             CCCCEEEEECTTEEEEET-TTEEEEE---EESS--SEEEEEEECTTSCEEE
T ss_pred             ccCceEEEEcCCceEEEC-CEEEEEE---ccCC--CceEEEEecCCccccc
Confidence            889999996543211100 1111111   1122  2689999999998543

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.04  E-value=3.8e-11  Score=112.13  Aligned_cols=107  Identities=15%  Similarity=0.090  Sum_probs=71.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+++|||||+|+|++... ..+...+.|.+...+...+++..+++|||||..+....-.       +  ....+|+++
T Consensus        10 vGhvd~GKTTLl~~L~~~~v-~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~-------~--~~~~aD~aI   79 (501)
T 1zo1_I           10 MGHVDHGKTSLLEYIRSTKV-ASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRA-------R--GAQATDIVV   79 (501)
T ss_dssp             EESTTSSSHHHHHHHHHHHH-SBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBC-------S--SSBSCSSEE
T ss_pred             ECCCCCCHHHHHHHHHcCCC-ccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHH-------H--HHhhCCEEE
Confidence            58999999999999997543 2222233444444445566788899999999865432211       1  113689999


Q ss_pred             EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|++.+. .......+.+..+....     .|+++|+||+|+.
T Consensus        80 LVVda~~-g~~~qT~e~l~~~~~~~-----vPiIVviNKiDl~  116 (501)
T 1zo1_I           80 LVVAADD-GVMPQTIEAIQHAKAAQ-----VPVVVAVNKIDKP  116 (501)
T ss_dssp             EEEETTT-BSCTTTHHHHHHHHHTT-----CCEEEEEECSSSS
T ss_pred             EEeeccc-CccHHHHHHHHHHHhcC-----ceEEEEEEecccc
Confidence            9987765 23344455555444322     7899999999985

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.03  E-value=7.2e-10  Score=105.71  Aligned_cols=107  Identities=11%  Similarity=0.063  Sum_probs=67.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEee------------------eCCeEEEEEeCCCCCCCCCCcHH
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS------------------RAGFTLNIVDTPGLIEGGYVNYH   62 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~------------------~~g~~v~iiDTPG~~~~~~~~~~   62 (265)
                      +|.+|+|||||+|+|++....... ..+.|.+.......                  +....+++|||||..+...... 
T Consensus        11 vGh~d~GKTTLl~~L~~~~v~~~e-~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~~~~~-   88 (594)
T 1g7s_A           11 LGHVDHGKTTLLDHIRGSAVASRE-AGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRK-   88 (594)
T ss_dssp             ECSTTSSHHHHHHHHHHHHHSCC-----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSBC-
T ss_pred             ECCCCCcHHHHHHHHhcccCcccc-CCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHHHHHH-
Confidence            699999999999999986431111 11222221111111                  1122699999999866532211 


Q ss_pred             HHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           63 AIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        63 ~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                            +.  ...+|++++|++.+. .+.......++.+...     ..|+++|+||+|+.
T Consensus        89 ------r~--~~~aD~aILVvDa~~-Gv~~qT~e~l~~l~~~-----~vPiIVViNKiDl~  135 (594)
T 1g7s_A           89 ------RG--GALADLAILIVDINE-GFKPQTQEALNILRMY-----RTPFVVAANKIDRI  135 (594)
T ss_dssp             ------SS--SBSCSEEEEEEETTT-CCCHHHHHHHHHHHHT-----TCCEEEEEECGGGS
T ss_pred             ------HH--HhhCCEEEEEEECCC-CccHhHHHHHHHHHHc-----CCeEEEEecccccc
Confidence                  11  136899999987764 3566677777766543     27999999999985

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.03  E-value=1.3e-09  Score=96.33  Aligned_cols=113  Identities=16%  Similarity=0.130  Sum_probs=64.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+||||||+++.+.+.-..........|......... ...++.||||+|..+.....  +  ....++  +++++++
T Consensus         5 lGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~--l--~~~~yy--r~a~~~I   77 (331)
T 3r7w_B            5 MGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPS--Y--DSERLF--KSVGALV   77 (331)
T ss_dssp             ECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCS--H--HHHHHH--TTCSEEE
T ss_pred             ECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchh--h--hhhhhc--cCCCEEE
Confidence            699999999999998875321111111122221111221 23678999999986543110  0  001112  4899999


Q ss_pred             EEEecCCcCCCHHHHHHHHHHHHh--cCcCcCCcEEEEEeCccCC
Q 024586           81 YVDRLDVYRVDNLDKQITRAITDN--FGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~~r~~~~d~~~l~~l~~~--~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|+++++. +...-..+.+.+...  ..+  ..|+++|+||+|+.
T Consensus        78 lV~Ditd~-~~~~~~~l~~~l~~~~~~~~--~ipillvgNK~DL~  119 (331)
T 3r7w_B           78 YVIDSQDE-YINAITNLAMIIEYAYKVNP--SINIEVLIHKVDGL  119 (331)
T ss_dssp             EECCCSSC-TTHHHHHHHHHHHHHHHHCT--TCEEEEECCCCCSS
T ss_pred             EEEECCch-HHHHHHHHHHHHHHHhhcCC--CCcEEEEEECcccC
Confidence            99777653 444333332223221  122  27899999999995

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.02  E-value=1.7e-11  Score=110.70  Aligned_cols=115  Identities=18%  Similarity=0.157  Sum_probs=67.6

Q ss_pred             CCCCCCCHHHHHHHHhCCC------cccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcH-HHHHHHHHHHhc
Q 024586            1 MGKGGVGKSSTVNSIIGEK------AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY-HAIQLIKRFLLN   73 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~------~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~-~~~~~i~~~l~~   73 (265)
                      +|.+|+|||||+|+|+|..      ...++..+++|.........  . .+.++||||+.+.....+ ...+.++.++..
T Consensus       166 vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~--~-~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~  242 (368)
T 3h2y_A          166 VGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLD--E-ESSLYDTPGIINHHQMAHYVGKQSLKLITPT  242 (368)
T ss_dssp             EEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESS--S-SCEEEECCCBCCTTSGGGGSCHHHHHHHSCS
T ss_pred             ecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEec--C-CeEEEeCCCcCcHHHHHHHhhHHHHHHhccc
Confidence            5999999999999999863      33456677777665544322  2 278999999987653221 122344555445


Q ss_pred             CCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           74 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        74 ~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      ..++.++|+++.+..-+.. +...+..+   .+.  ..++++|+||+|...
T Consensus       243 ~~i~~~~~~l~~~~~~~~g-~l~~~d~l---~~~--~~~~~~v~nk~d~~~  287 (368)
T 3h2y_A          243 KEIKPMVFQLNEEQTLFFS-GLARFDYV---SGG--RRAFTCHFSNRLTIH  287 (368)
T ss_dssp             SCCCCEEEEECTTEEEEET-TTEEEEEE---ESS--SEEEEEEECTTSCEE
T ss_pred             cccCceEEEEcCCCEEEEc-ceEEEEEe---cCC--CceEEEEecCccccc
Confidence            6788888885442111111 11111111   122  278999999999853

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.02  E-value=1.2e-09  Score=104.23  Aligned_cols=108  Identities=19%  Similarity=0.118  Sum_probs=58.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccc--------cC------CCCCCCccEEEEeeeC-----CeEEEEEeCCCCCCCCCCcH
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTV--------ST------FQSEGPRPVMVSRSRA-----GFTLNIVDTPGLIEGGYVNY   61 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~--------~~------~~~~t~~~~~~~~~~~-----g~~v~iiDTPG~~~~~~~~~   61 (265)
                      +|..|+|||||+++|++......        .+      ..+.|.........+.     +..+++|||||..+..    
T Consensus        10 iGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF~----   85 (599)
T 3cb4_D           10 IAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFS----   85 (599)
T ss_dssp             ECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGGGH----
T ss_pred             ECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchHHH----
Confidence            59999999999999986321110        00      0122332223333333     3678999999985421    


Q ss_pred             HHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           62 HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        62 ~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                         ..+.+.+.  .+|++++|++.+. .........+......     ..|+++|+||+|+.
T Consensus        86 ---~ev~~~l~--~aD~aILVVDa~~-gv~~qt~~~~~~~~~~-----~ipiIvViNKiDl~  136 (599)
T 3cb4_D           86 ---YEVSRSLA--ACEGALLVVDAGQ-GVEAQTLANCYTAMEM-----DLEVVPVLNKIDLP  136 (599)
T ss_dssp             ---HHHHHHHH--HCSEEEEEEETTT-CCCTHHHHHHHHHHHT-----TCEEEEEEECTTST
T ss_pred             ---HHHHHHHH--HCCEEEEEEECCC-CCCHHHHHHHHHHHHC-----CCCEEEeeeccCcc
Confidence               22233332  5799999977654 3444444444433332     27899999999995

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.02  E-value=3.5e-10  Score=104.14  Aligned_cols=111  Identities=12%  Similarity=0.154  Sum_probs=64.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccc------------------------cC------CCCCCCccEEEEeeeCCeEEEEEeC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTV------------------------ST------FQSEGPRPVMVSRSRAGFTLNIVDT   50 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~------------------------~~------~~~~t~~~~~~~~~~~g~~v~iiDT   50 (265)
                      +|..|+|||||+|+|++......                        .+      ..+.|...........+..+.+|||
T Consensus        12 iG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~~~~iiDt   91 (435)
T 1jny_A           12 IGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYFFTIIDA   91 (435)
T ss_dssp             EESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCEEEECCC
T ss_pred             EeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCeEEEEEEC
Confidence            58999999999999986411000                        00      1234444444456667889999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCC------CHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           51 PGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRV------DNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~------~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      ||..+       +...+...+  ..+|++++|++.+...+      ..+..+.+..+.. .+.   +++++|+||+|+.+
T Consensus        92 pG~~~-------f~~~~~~~~--~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~-~~~---~~iivviNK~Dl~~  158 (435)
T 1jny_A           92 PGHRD-------FVKNMITGA--SQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT-MGL---DQLIVAVNKMDLTE  158 (435)
T ss_dssp             SSSTT-------HHHHHHHTS--SCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH-TTC---TTCEEEEECGGGSS
T ss_pred             CCcHH-------HHHHHHhhh--hhcCEEEEEEECCCCccccccccchHHHHHHHHHHH-cCC---CeEEEEEEcccCCC
Confidence            99853       222333332  58899999987765211      2233333333332 221   57899999999953

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.01  E-value=1.2e-09  Score=98.36  Aligned_cols=80  Identities=18%  Similarity=0.194  Sum_probs=56.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeee---------------------CCeEEEEEeCCCCCCCCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR---------------------AGFTLNIVDTPGLIEGGYV   59 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~---------------------~g~~v~iiDTPG~~~~~~~   59 (265)
                      ||.+|+|||||+|+|++.. +.++.++.+|..+......+                     .+..+.+|||||+..+...
T Consensus         7 VG~pnvGKSTL~n~L~~~~-~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~~a~~   85 (368)
T 2dby_A            7 VGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVKGAHK   85 (368)
T ss_dssp             ECCSSSSHHHHHHHHHHHH-TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCCCCCS
T ss_pred             ECCCCCCHHHHHHHHhCCC-CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccccccc
Confidence            6999999999999999875 35566666666555544433                     2457999999999875322


Q ss_pred             ----cHHHHHHHHHHHhcCCccEEEEEEecCC
Q 024586           60 ----NYHAIQLIKRFLLNKTIDVLLYVDRLDV   87 (265)
Q Consensus        60 ----~~~~~~~i~~~l~~~~~d~iL~V~~~d~   87 (265)
                          ...++..++      .+|++++|++...
T Consensus        86 ~~~lg~~fl~~ir------~ad~ii~VvD~~~  111 (368)
T 2dby_A           86 GEGLGNQFLAHIR------EVAAIAHVLRCFP  111 (368)
T ss_dssp             SSCTTHHHHHHHH------TCSEEEEEEECCC
T ss_pred             cchHHHHHHHHHH------hCCEEEEEEECCC
Confidence                234455555      7899999987654

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.01  E-value=1.2e-09  Score=106.15  Aligned_cols=108  Identities=13%  Similarity=0.109  Sum_probs=68.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcc-----c------ccC------CCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH
Q 024586            1 MGKGGVGKSSTVNSIIGEKAV-----T------VST------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA   63 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~-----~------~~~------~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~   63 (265)
                      +|.+|+|||||+|+|+.....     .      +.+      ..+.|.........+.+..+++|||||..+.   ..+.
T Consensus        18 vG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df---~~~~   94 (691)
T 1dar_A           18 AAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDF---TIEV   94 (691)
T ss_dssp             EECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTC---HHHH
T ss_pred             ECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccch---HHHH
Confidence            589999999999999932100     0      000      1123333444566678899999999998642   1223


Q ss_pred             HHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           64 IQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        64 ~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ...++      .+|++|+|++... .........+..+.+.     ..|+++|+||+|+.
T Consensus        95 ~~~l~------~aD~~ilVvDa~~-g~~~~t~~~~~~~~~~-----~~p~ivviNKiD~~  142 (691)
T 1dar_A           95 ERSMR------VLDGAIVVFDSSQ-GVEPQSETVWRQAEKY-----KVPRIAFANKMDKT  142 (691)
T ss_dssp             HHHHH------HCSEEEEEEETTT-CSCHHHHHHHHHHHHT-----TCCEEEEEECTTST
T ss_pred             HHHHH------HCCEEEEEEECCC-CcchhhHHHHHHHHHc-----CCCEEEEEECCCcc
Confidence            33333      5799999977664 3566666666665543     27999999999985

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.00  E-value=1.7e-09  Score=93.46  Aligned_cols=117  Identities=17%  Similarity=0.227  Sum_probs=66.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccC-------CCCCCCccEE-EEeeeCC--eEEEEEeCCCCCCCCCC---cHHHHHHH
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVST-------FQSEGPRPVM-VSRSRAG--FTLNIVDTPGLIEGGYV---NYHAIQLI   67 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~-------~~~~t~~~~~-~~~~~~g--~~v~iiDTPG~~~~~~~---~~~~~~~i   67 (265)
                      +|++|+|||||+|+|+|......+.       ...++..... +..+..+  ..++++|+||++.....   .+...+.+
T Consensus         8 vG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~i~~~~   87 (270)
T 3sop_A            8 VGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEPIEKYI   87 (270)
T ss_dssp             EESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHHHHHHH
Confidence            6999999999999999864322221       1111111111 1111122  26799999999764221   11122111


Q ss_pred             H----H----HHhc--------CCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           68 K----R----FLLN--------KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        68 ~----~----~l~~--------~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      .    .    .++.        ..+++.+|+++.....++..|.++++.+.+.      .++++|+||+|..
T Consensus        88 ~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~------~~vI~Vi~K~D~l  153 (270)
T 3sop_A           88 NEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV------VNIIPVIAKADTM  153 (270)
T ss_dssp             HHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT------SEEEEEETTGGGS
T ss_pred             HHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc------CcEEEEEeccccC
Confidence            1    1    1111        2358888885544445889998888888753      7899999999985

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=98.99  E-value=2.8e-11  Score=115.54  Aligned_cols=110  Identities=15%  Similarity=0.057  Sum_probs=51.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccC------------------------------CCCCCCccEEEEeeeCCeEEEEEeC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVST------------------------------FQSEGPRPVMVSRSRAGFTLNIVDT   50 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~------------------------------~~~~t~~~~~~~~~~~g~~v~iiDT   50 (265)
                      +|.+++|||||+|+|++........                              ..+.|...........+..++||||
T Consensus       183 iG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~~i~iiDT  262 (592)
T 3mca_A          183 TGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKIYEIGDA  262 (592)
T ss_dssp             ECCSSSTHHHHHHHHHHHHHCC------------------------------------------------------CCEE
T ss_pred             EcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCeEEEEEEC
Confidence            5999999999999997532111100                              1234444444555667789999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCc----CC--CHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           51 PGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVY----RV--DNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~----r~--~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ||..+....   +...+      ..+|++|+|++.+..    .+  .......+..+... |.   +++|+|+||+|+.
T Consensus       263 PGh~~f~~~---~~~~~------~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l-gi---p~iIvviNKiDl~  328 (592)
T 3mca_A          263 PGHRDFISG---MIAGA------SSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL-GI---SEIVVSVNKLDLM  328 (592)
T ss_dssp             ESSSEEEEE---CCC-------------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS-SC---CCEEEEEECGGGG
T ss_pred             CChHHHHHH---HHHHH------hhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc-CC---CeEEEEEeccccc
Confidence            998643211   11111      267999999766532    12  44455555544443 21   3599999999985

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=98.98  E-value=4e-10  Score=101.16  Aligned_cols=80  Identities=21%  Similarity=0.245  Sum_probs=54.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC-----------------eEEEEEeCCCCCCCCC----C
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-----------------FTLNIVDTPGLIEGGY----V   59 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g-----------------~~v~iiDTPG~~~~~~----~   59 (265)
                      ||.+|||||||+|+|++.. +.+++++.+|..+......+.+                 ..+.+|||||+.++..    .
T Consensus         8 VG~pnvGKSTL~n~Lt~~~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~~~gl   86 (363)
T 1jal_A            8 VGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASKGEGL   86 (363)
T ss_dssp             ECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHHHGGG
T ss_pred             ECCCCCCHHHHHHHHHCCC-CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccccchH
Confidence            6999999999999999987 4667777777766554555554                 4799999999976421    1


Q ss_pred             cHHHHHHHHHHHhcCCccEEEEEEecCC
Q 024586           60 NYHAIQLIKRFLLNKTIDVLLYVDRLDV   87 (265)
Q Consensus        60 ~~~~~~~i~~~l~~~~~d~iL~V~~~d~   87 (265)
                      ...++..++      .+|++++|++...
T Consensus        87 ~~~fl~~ir------~ad~il~VvD~~~  108 (363)
T 1jal_A           87 GNKFLANIR------ETDAIGHVVRCFE  108 (363)
T ss_dssp             TCCHHHHHH------TCSEEEEEEECSC
T ss_pred             HHHHHHHHH------hcCeEEEEEecCC
Confidence            112334444      8899999987764

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=98.96  E-value=5.8e-09  Score=101.45  Aligned_cols=108  Identities=17%  Similarity=0.152  Sum_probs=67.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCccc-----c------cC------CCCCCCccEEEEeeeCC-------eEEEEEeCCCCCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVT-----V------ST------FQSEGPRPVMVSRSRAG-------FTLNIVDTPGLIEG   56 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~-----~------~~------~~~~t~~~~~~~~~~~g-------~~v~iiDTPG~~~~   56 (265)
                      +|..|+|||||+++|+......     +      .+      ..+.|.........+.+       ..++||||||..+.
T Consensus        16 iG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liDTPG~~df   95 (704)
T 2rdo_7           16 SAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDF   95 (704)
T ss_pred             ECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEeCCCccch
Confidence            6999999999999997532100     0      00      01122222233455555       78999999998653


Q ss_pred             CCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           57 GYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        57 ~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      .   .    .+.+++  ..+|++|+|++... .........++.+...     ..|+++|+||+|+.
T Consensus        96 ~---~----~~~~~l--~~aD~aIlVvDa~~-gv~~qt~~~~~~~~~~-----~ip~ilviNKiD~~  147 (704)
T 2rdo_7           96 T---I----EVERSM--RVLDGAVMVYCAVG-GVQPQSETVWRQANKY-----KVPRIAFVNKMDRM  147 (704)
T ss_pred             H---H----HHHHHH--HHCCEEEEEEeCCC-CCcHHHHHHHHHHHHc-----CCCEEEEEeCCCcc
Confidence            2   1    222222  26799999977654 3444555555554432     27899999999984

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=98.94  E-value=7.2e-10  Score=102.99  Aligned_cols=110  Identities=11%  Similarity=0.054  Sum_probs=58.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCccc------------------------ccC------CCCCCCccEEEEeeeCCeEEEEEeC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVT------------------------VST------FQSEGPRPVMVSRSRAGFTLNIVDT   50 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~------------------------~~~------~~~~t~~~~~~~~~~~g~~v~iiDT   50 (265)
                      +|..++|||||+|+|++.....                        +.+      ..+.|..........++..+.+|||
T Consensus        49 iG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~~~~iiDt  128 (467)
T 1r5b_A           49 IGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRFSLLDA  128 (467)
T ss_dssp             EECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEEEEECCC
T ss_pred             EECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCeEEEEEEC
Confidence            5899999999999997522100                        000      0122333322345567889999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcC----CC--HHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           51 PGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR----VD--NLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r----~~--~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ||..+.       ...+...+  ..+|++|+|++.+...    |.  ....+.+..+.. .|-   +++++|+||+|+.
T Consensus       129 PGh~~f-------~~~~~~~~--~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~-~~v---p~iivviNK~Dl~  194 (467)
T 1r5b_A          129 PGHKGY-------VTNMINGA--SQADIGVLVISARRGEFEAGFERGGQTREHAVLART-QGI---NHLVVVINKMDEP  194 (467)
T ss_dssp             CC------------------T--TSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH-TTC---SSEEEEEECTTST
T ss_pred             CCcHHH-------HHHHHhhc--ccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH-cCC---CEEEEEEECccCC
Confidence            998532       12222222  4789999997766421    11  233334433332 221   3499999999984

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=98.93  E-value=1.8e-09  Score=94.65  Aligned_cols=117  Identities=22%  Similarity=0.305  Sum_probs=56.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCC------CCCCc--cEEEEeeeCC--eEEEEEeCCCCCCCCCC---cHHHHHHH
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQ------SEGPR--PVMVSRSRAG--FTLNIVDTPGLIEGGYV---NYHAIQLI   67 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~------~~t~~--~~~~~~~~~g--~~v~iiDTPG~~~~~~~---~~~~~~~i   67 (265)
                      +|++|+|||||+|+|+|...+..+...      ..|..  ...+..+..+  ..++++||||+++....   .....+.+
T Consensus        24 vG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l  103 (301)
T 2qnr_A           24 VGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYI  103 (301)
T ss_dssp             EEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CTTHHHHH
T ss_pred             ECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHHHHHHHH
Confidence            699999999999999997433322210      01111  1111222222  46899999999543110   01111111


Q ss_pred             ----HHHH---h--------cCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           68 ----KRFL---L--------NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        68 ----~~~l---~--------~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                          ..++   +        ...++++||++......++..+.++++.+..    .  .++++|+||+|+.
T Consensus       104 ~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~~----~--~~iilV~~K~Dl~  168 (301)
T 2qnr_A          104 DEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIHN----K--VNIVPVIAKADTL  168 (301)
T ss_dssp             HHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHTT----T--SCEEEEECCGGGS
T ss_pred             HHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHHh----c--CCEEEEEEeCCCC
Confidence                1221   1        1235677877554333477777655554432    1  6899999999984

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.90  E-value=2.7e-09  Score=97.53  Aligned_cols=117  Identities=16%  Similarity=0.171  Sum_probs=61.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCccccc--C-CCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCC---cHHH----HHHHH
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVS--T-FQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYV---NYHA----IQLIK   68 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~--~-~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~---~~~~----~~~i~   68 (265)
                      +|++|+|||||+|+|+|.......  . .+..+.....+.....+  ..++++||||++.....   ...+    ...+.
T Consensus        48 vG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~  127 (427)
T 2qag_B           48 VGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFE  127 (427)
T ss_dssp             ECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHH
Confidence            699999999999999998532111  1 11111111112222222  26899999999763211   0111    11111


Q ss_pred             HHHh-------------cCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           69 RFLL-------------NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        69 ~~l~-------------~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      .++.             ...+|+++|++.-....++..|..+++.|..      ..++|+|+||+|..
T Consensus       128 ~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~~------~~~vI~Vi~KtD~L  189 (427)
T 2qag_B          128 AYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLDS------KVNIIPIIAKADAI  189 (427)
T ss_dssp             HHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTCS------CSEEEEEESCGGGS
T ss_pred             HHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHhh------CCCEEEEEcchhcc
Confidence            2211             1124555554322223478888888877752      27999999999985

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=98.89  E-value=3.7e-09  Score=104.71  Aligned_cols=108  Identities=15%  Similarity=0.211  Sum_probs=67.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccC---------------CCCCCCccEEEEeeeC----------------CeEEEEEe
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVST---------------FQSEGPRPVMVSRSRA----------------GFTLNIVD   49 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~---------------~~~~t~~~~~~~~~~~----------------g~~v~iiD   49 (265)
                      +|..|+|||||+|+|++......+.               ..+.|.........+.                +..+++||
T Consensus        25 iG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~liD  104 (842)
T 1n0u_A           25 IAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLID  104 (842)
T ss_dssp             ECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEEEEEEC
T ss_pred             ECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCceEEEEE
Confidence            5999999999999999753211110               0112222222222332                67899999


Q ss_pred             CCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           50 TPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        50 TPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      |||..+..   .+....++      .+|++|+|++... .....+...+..+...     ..|+++|+||+|+.
T Consensus       105 TPG~~df~---~~~~~~l~------~aD~ailVvDa~~-g~~~qt~~~~~~~~~~-----~~p~ilviNK~D~~  163 (842)
T 1n0u_A          105 SPGHVDFS---SEVTAALR------VTDGALVVVDTIE-GVCVQTETVLRQALGE-----RIKPVVVINKVDRA  163 (842)
T ss_dssp             CCCCCSSC---HHHHHHHH------TCSEEEEEEETTT-BSCHHHHHHHHHHHHT-----TCEEEEEEECHHHH
T ss_pred             CcCchhhH---HHHHHHHH------hCCEEEEEEeCCC-CCCHHHHHHHHHHHHc-----CCCeEEEEECCCcc
Confidence            99997643   23333333      7899999977664 3555665555544432     27899999999984

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=98.86  E-value=5.6e-09  Score=105.09  Aligned_cols=108  Identities=13%  Similarity=0.051  Sum_probs=66.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCc------cc---cc------CCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHH
Q 024586            1 MGKGGVGKSSTVNSIIGEKA------VT---VS------TFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQ   65 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~------~~---~~------~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~   65 (265)
                      +|.+++|||||+|+|++...      +.   ..      ...+.|...........+..+.+|||||..       ++..
T Consensus       302 IGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHe-------dF~~  374 (1289)
T 3avx_A          302 IGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHA-------DYVK  374 (1289)
T ss_dssp             EESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHH-------HHHH
T ss_pred             EcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChH-------HHHH
Confidence            58999999999999997410      00   00      011223222223344567899999999973       2333


Q ss_pred             HHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCc-EEEEEeCccCC
Q 024586           66 LIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR-ALIVLTHAQLS  123 (265)
Q Consensus        66 ~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~-~ivV~tk~D~~  123 (265)
                      .+...+  ..+|++|+|++.+. ....+..+.+..+... +    .| +|+|+||+|+.
T Consensus       375 ~mi~ga--s~AD~aILVVDAtd-Gv~~QTrEhL~ll~~l-g----IP~IIVVINKiDLv  425 (1289)
T 3avx_A          375 NMITGA--AQMDGAILVVAATD-GPMPQTREHILLGRQV-G----VPYIIVFLNKCDMV  425 (1289)
T ss_dssp             HHHHTS--CCCSEEEEEEETTT-CSCTTHHHHHHHHHHH-T----CSCEEEEEECCTTC
T ss_pred             HHHHHH--hhCCEEEEEEcCCc-cCcHHHHHHHHHHHHc-C----CCeEEEEEeecccc
Confidence            333322  47899999987765 3344555666555543 2    45 79999999995

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=98.86  E-value=2.7e-09  Score=96.72  Aligned_cols=79  Identities=24%  Similarity=0.273  Sum_probs=43.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC-----------------eEEEEEeCCCCCCCCCCcH--
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-----------------FTLNIVDTPGLIEGGYVNY--   61 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g-----------------~~v~iiDTPG~~~~~~~~~--   61 (265)
                      +|.+|||||||+|+|+|... .+++++.+|..+......+.+                 ..+.+|||||+..+....+  
T Consensus        28 VG~pnvGKSTL~n~Ltg~~~-~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as~~~gl  106 (396)
T 2ohf_A           28 VGLPNVGKSTFFNVLTNSQA-SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGL  106 (396)
T ss_dssp             ECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----------
T ss_pred             ECCCCCCHHHHHHHHHCCCc-cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccchhhHH
Confidence            69999999999999999875 677777788777666655543                 2589999999976543211  


Q ss_pred             --HHHHHHHHHHhcCCccEEEEEEecC
Q 024586           62 --HAIQLIKRFLLNKTIDVLLYVDRLD   86 (265)
Q Consensus        62 --~~~~~i~~~l~~~~~d~iL~V~~~d   86 (265)
                        .++..++      .+|++++|++..
T Consensus       107 g~~~l~~ir------~aD~Il~VvD~~  127 (396)
T 2ohf_A          107 GNAFLSHIS------ACDGIFHLTRAF  127 (396)
T ss_dssp             CCHHHHHHH------TSSSEEEEEEC-
T ss_pred             HHHHHHHHH------hcCeEEEEEecC
Confidence              3344444      889999997654

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=98.85  E-value=2.6e-08  Score=96.37  Aligned_cols=108  Identities=14%  Similarity=0.144  Sum_probs=72.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcc-----cc------cC------CCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH
Q 024586            1 MGKGGVGKSSTVNSIIGEKAV-----TV------ST------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA   63 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~-----~~------~~------~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~   63 (265)
                      +|.+|+|||||+++|++....     .+      .+      ..+.|...........+..+++|||||..+.   ....
T Consensus        15 iG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f---~~~~   91 (665)
T 2dy1_A           15 VGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF---VGEI   91 (665)
T ss_dssp             EESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG---HHHH
T ss_pred             ECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch---HHHH
Confidence            589999999999999953211     00      00      0123444555566677889999999998542   1222


Q ss_pred             HHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           64 IQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        64 ~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ...++      .+|++++|++... ........+++.+....     .++++|+||+|+.
T Consensus        92 ~~~l~------~ad~~ilVvD~~~-g~~~qt~~~~~~~~~~~-----ip~ilv~NKiD~~  139 (665)
T 2dy1_A           92 RGALE------AADAALVAVSAEA-GVQVGTERAWTVAERLG-----LPRMVVVTKLDKG  139 (665)
T ss_dssp             HHHHH------HCSEEEEEEETTT-CSCHHHHHHHHHHHHTT-----CCEEEEEECGGGC
T ss_pred             HHHHh------hcCcEEEEEcCCc-ccchhHHHHHHHHHHcc-----CCEEEEecCCchh
Confidence            22222      5799999977543 46777777777766532     7899999999984

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.84  E-value=4.8e-09  Score=95.12  Aligned_cols=80  Identities=19%  Similarity=0.230  Sum_probs=62.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC-----------------eEEEEEeCCCCCCCCCCc---
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-----------------FTLNIVDTPGLIEGGYVN---   60 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g-----------------~~v~iiDTPG~~~~~~~~---   60 (265)
                      +|.+|||||||+|+|+|...+.+++++.+|..+......+.|                 ..+.++||||+..+....   
T Consensus        26 VG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s~~e~L  105 (392)
T 1ni3_A           26 VGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVGL  105 (392)
T ss_dssp             EECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCCSSSSS
T ss_pred             ECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCCcHHHHH
Confidence            699999999999999998876788888889888887777765                 468999999987653322   


Q ss_pred             -HHHHHHHHHHHhcCCccEEEEEEecC
Q 024586           61 -YHAIQLIKRFLLNKTIDVLLYVDRLD   86 (265)
Q Consensus        61 -~~~~~~i~~~l~~~~~d~iL~V~~~d   86 (265)
                       ..++..+      ..+|++++|++..
T Consensus       106 ~~~fl~~i------r~~d~il~Vvd~~  126 (392)
T 1ni3_A          106 GNAFLSHV------RAVDAIYQVVRAF  126 (392)
T ss_dssp             CHHHHHHH------TTCSEEEEEEECC
T ss_pred             HHHHHHHH------HHHHHHHHHHhcc
Confidence             2344333      3789999997764

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.84  E-value=2e-09  Score=93.62  Aligned_cols=59  Identities=22%  Similarity=0.319  Sum_probs=37.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHH
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH   62 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~   62 (265)
                      +|.+|||||||+|+|+|...+.++..+++|.......  . +..+.++||||+..+....++
T Consensus       126 vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~--~-~~~~~l~DtpG~~~~~~~~~~  184 (282)
T 1puj_A          126 IGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVK--V-GKELELLDTPGILWPKFEDEL  184 (282)
T ss_dssp             EESTTSSHHHHHHHHHTSCCC------------CCEE--E-TTTEEEEECCCCCCSCCCCHH
T ss_pred             EecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEE--e-CCCEEEEECcCcCCCCCCCHH
Confidence            5999999999999999998778888887776654222  2 447899999999887655543

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=98.83  E-value=4.8e-08  Score=92.38  Aligned_cols=116  Identities=11%  Similarity=0.137  Sum_probs=78.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcc---------------cccCC------CCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAV---------------TVSTF------QSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV   59 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~---------------~~~~~------~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~   59 (265)
                      ||..++|||||.-+|+-...+               .+.++      .+.|......+..+++..++||||||..|..  
T Consensus        37 iaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHvDF~--  114 (548)
T 3vqt_A           37 ISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQDFS--  114 (548)
T ss_dssp             ECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCGGGCS--
T ss_pred             EeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcHHHH--
Confidence            578899999999999732110               11111      1334445556788999999999999997654  


Q ss_pred             cHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHHHHH
Q 024586           60 NYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFC  134 (265)
Q Consensus        60 ~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~~~~  134 (265)
                       .+....++      -+|..|+|++... .+..+...+++...+..     .|.++++||+|.   .+.++++.+
T Consensus       115 -~Ev~raL~------~~DgAvlVvda~~-GV~~qT~~v~~~a~~~~-----lp~i~fINK~Dr---~~ad~~~~~  173 (548)
T 3vqt_A          115 -EDTYRVLT------AVDSALVVIDAAK-GVEAQTRKLMDVCRMRA-----TPVMTFVNKMDR---EALHPLDVM  173 (548)
T ss_dssp             -HHHHHHHH------SCSEEEEEEETTT-BSCHHHHHHHHHHHHTT-----CCEEEEEECTTS---CCCCHHHHH
T ss_pred             -HHHHHHHH------hcCceEEEeecCC-CcccccHHHHHHHHHhC-----CceEEEEecccc---hhcchhHhh
Confidence             23434444      7799999965543 47788888888777664     899999999997   344555555

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=98.79  E-value=7e-10  Score=99.49  Aligned_cols=61  Identities=16%  Similarity=0.251  Sum_probs=37.2

Q ss_pred             CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCc
Q 024586           41 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA  120 (265)
Q Consensus        41 ~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~  120 (265)
                      .+..+.||||||+...      ....+      ..+|++++|++....  . .. +.++   ..   -...+.++|+||+
T Consensus       170 ~~~~~iiiDTpGi~~~------~~~~~------~~aD~vl~V~d~~~~--~-~~-~~l~---~~---~~~~p~ivVlNK~  227 (355)
T 3p32_A          170 AGFDVILIETVGVGQS------EVAVA------NMVDTFVLLTLARTG--D-QL-QGIK---KG---VLELADIVVVNKA  227 (355)
T ss_dssp             TTCCEEEEEECSCSSH------HHHHH------TTCSEEEEEEESSTT--C-TT-TTCC---TT---SGGGCSEEEEECC
T ss_pred             CCCCEEEEeCCCCCcH------HHHHH------HhCCEEEEEECCCCC--c-cH-HHHH---Hh---HhhcCCEEEEECC
Confidence            5788999999998531      11111      478999999664421  1 11 1111   10   1126889999999


Q ss_pred             cCC
Q 024586          121 QLS  123 (265)
Q Consensus       121 D~~  123 (265)
                      |+.
T Consensus       228 Dl~  230 (355)
T 3p32_A          228 DGE  230 (355)
T ss_dssp             CGG
T ss_pred             CCc
Confidence            984

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=98.75  E-value=1.7e-09  Score=96.85  Aligned_cols=62  Identities=13%  Similarity=0.139  Sum_probs=34.6

Q ss_pred             eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeC
Q 024586           40 RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTH  119 (265)
Q Consensus        40 ~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk  119 (265)
                      ..|..+.++||||+...    +.   .+.     ..+|++++|++....    .+.+.++.  ..+    ..+.++|+||
T Consensus       164 ~~~~~~iliDT~Gi~~~----~~---~l~-----~~~d~vl~V~d~~~~----~~~~~i~~--~il----~~~~ivVlNK  221 (349)
T 2www_A          164 GAGYDIILIETVGVGQS----EF---AVA-----DMVDMFVLLLPPAGG----DELQGIKR--GII----EMADLVAVTK  221 (349)
T ss_dssp             HTTCSEEEEECCCC--C----HH---HHH-----TTCSEEEEEECCC------------------C----CSCSEEEECC
T ss_pred             cCCCCEEEEECCCcchh----hh---hHH-----hhCCEEEEEEcCCcc----hhHHHhHH--HHH----hcCCEEEEee
Confidence            36778999999998532    11   111     378999999654421    11111111  112    1578999999


Q ss_pred             ccCC
Q 024586          120 AQLS  123 (265)
Q Consensus       120 ~D~~  123 (265)
                      +|+.
T Consensus       222 ~Dl~  225 (349)
T 2www_A          222 SDGD  225 (349)
T ss_dssp             CSGG
T ss_pred             ecCC
Confidence            9984

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.73  E-value=4.7e-08  Score=89.18  Aligned_cols=109  Identities=19%  Similarity=0.159  Sum_probs=63.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccC----CCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVST----FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI   76 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~----~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~   76 (265)
                      +|++|+|||||+|+|+|......+.    ...+|........ .....++++|+||++.....-+++++.+.  +  ...
T Consensus        75 vG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~-~~~~~ltv~D~~g~~~~~~~~~~~L~~~~--L--~~~  149 (413)
T 1tq4_A           75 TGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKH-PNIPNVVFWDLPGIGSTNFPPDTYLEKMK--F--YEY  149 (413)
T ss_dssp             EECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEEC-SSCTTEEEEECCCGGGSSCCHHHHHHHTT--G--GGC
T ss_pred             ECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccc-cccCCeeehHhhcccchHHHHHHHHHHcC--C--Ccc
Confidence            5999999999999999953211111    1112222222221 11225899999998643222223332221  1  233


Q ss_pred             cEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccC
Q 024586           77 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL  122 (265)
Q Consensus        77 d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~  122 (265)
                      +.+++ +  +..+....+..+...+....     +|+++|+||.|+
T Consensus       150 ~~~~~-l--S~G~~~kqrv~la~aL~~~~-----~p~~lV~tkpdl  187 (413)
T 1tq4_A          150 DFFII-I--SATRFKKNDIDIAKAISMMK-----KEFYFVRTKVDS  187 (413)
T ss_dssp             SEEEE-E--ESSCCCHHHHHHHHHHHHTT-----CEEEEEECCHHH
T ss_pred             CCeEE-e--CCCCccHHHHHHHHHHHhcC-----CCeEEEEecCcc
Confidence            55554 3  44346677788888887753     899999999986

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.69  E-value=2.3e-08  Score=94.99  Aligned_cols=94  Identities=19%  Similarity=0.154  Sum_probs=53.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEe-------eeCCeEEEEEeCCCCCCCCC-CcHHHHH--HHHHH
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSR-------SRAGFTLNIVDTPGLIEGGY-VNYHAIQ--LIKRF   70 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~-------~~~g~~v~iiDTPG~~~~~~-~~~~~~~--~i~~~   70 (265)
                      +|.+|+|||||+|+|+|.....  ...++|..++....       ...+..+.++||||+.+... .......  .+...
T Consensus        44 vG~pnvGKStLiN~L~g~~~~~--~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~~~fala~l  121 (592)
T 1f5n_A           44 VGLYRTGKSYLMNKLAGKKKGF--SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSWIFALAVL  121 (592)
T ss_dssp             EEBTTSSHHHHHHHHTTCSSCS--CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHhHcCCCCcc--ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHHHHHHHHHH
Confidence            6999999999999999987532  22223322222111       23577899999999987543 1111111  12222


Q ss_pred             HhcCCccEEEEEEecCCcCCCHHHHHHHHHHHH
Q 024586           71 LLNKTIDVLLYVDRLDVYRVDNLDKQITRAITD  103 (265)
Q Consensus        71 l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~  103 (265)
                      ++    ++++|-  ... .+++.+...+..+.+
T Consensus       122 ls----s~lv~n--~~~-~i~~~dl~~l~~v~e  147 (592)
T 1f5n_A          122 LS----STFVYN--SIG-TINQQAMDQLYYVTE  147 (592)
T ss_dssp             HC----SEEEEE--EES-CSSHHHHHTTHHHHT
T ss_pred             hc----CeEEEE--CCC-CccHHHHHHHHHHHH
Confidence            22    333333  332 477888877666544

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.61  E-value=2.5e-08  Score=88.85  Aligned_cols=62  Identities=21%  Similarity=0.240  Sum_probs=36.5

Q ss_pred             eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeC
Q 024586           40 RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTH  119 (265)
Q Consensus        40 ~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk  119 (265)
                      +.+..+.+|||||+.+..    .   .+.     ..+|++++|++....  .  +.+.++.  ...    ..|.++|+||
T Consensus       146 ~~~~~i~liDTpG~~~~~----~---~~~-----~~aD~vl~Vvd~~~~--~--~~~~l~~--~~~----~~p~ivv~NK  203 (341)
T 2p67_A          146 AAGYDVVIVETVGVGQSE----T---EVA-----RMVDCFISLQIAGGG--D--DLQGIKK--GLM----EVADLIVINK  203 (341)
T ss_dssp             HTTCSEEEEEEECCTTHH----H---HHH-----TTCSEEEEEECC----------CCCCH--HHH----HHCSEEEECC
T ss_pred             ccCCCEEEEeCCCccchH----H---HHH-----HhCCEEEEEEeCCcc--H--HHHHHHH--hhh----cccCEEEEEC
Confidence            457889999999986421    1   111     488999999654321  1  1111111  001    1578999999


Q ss_pred             ccCC
Q 024586          120 AQLS  123 (265)
Q Consensus       120 ~D~~  123 (265)
                      +|+.
T Consensus       204 ~Dl~  207 (341)
T 2p67_A          204 DDGD  207 (341)
T ss_dssp             CCTT
T ss_pred             CCCC
Confidence            9984

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.58  E-value=1.6e-08  Score=86.94  Aligned_cols=55  Identities=25%  Similarity=0.348  Sum_probs=35.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY   58 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~   58 (265)
                      +|.+|+|||||+|+|+|.....++..+++|........   +..+.++||||+.+...
T Consensus       105 vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtpG~~~~~~  159 (262)
T 3cnl_A          105 VGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSL---ENGVKILDTPGILYKNI  159 (262)
T ss_dssp             EESTTSSHHHHHHHHHTTCC----------CCSCEEEC---TTSCEEESSCEECCCCC
T ss_pred             eCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEe---CCCEEEEECCCcccCcC
Confidence            59999999999999999887667777777665543221   34678999999988765

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=98.58  E-value=2.4e-08  Score=85.18  Aligned_cols=47  Identities=15%  Similarity=0.183  Sum_probs=30.4

Q ss_pred             CccEEEEEEecCCc---CCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           75 TIDVLLYVDRLDVY---RVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        75 ~~d~iL~V~~~d~~---r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ++|++++|++++..   .+.. -..++..+.+.... ...|+++|+||+|+.
T Consensus       162 ~ad~vilV~D~t~~~~~s~~~-~~~~l~~i~~~~~~-~~~piilV~NK~Dl~  211 (255)
T 3c5h_A          162 LVDGFLLGIDVSRGMNRNFDD-QLKFVSNLYNQLAK-TKKPIVVVLTKCDEG  211 (255)
T ss_dssp             ECCEEEEEEECBC----CHHH-HHHHHHHHHHHHHH-TTCCEEEEEECGGGB
T ss_pred             cCCEEEEEEECCCCchhhHHH-HHHHHHHHHHHhcc-CCCCEEEEEEccccc
Confidence            47999999887753   2322 23555555544211 127999999999984

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.53  E-value=2.5e-07  Score=86.47  Aligned_cols=111  Identities=20%  Similarity=0.221  Sum_probs=63.8

Q ss_pred             CCCCCCCHHHHHHHHh------CCCcccccCCC--CCC---------C--ccEEEE----------------eeeCCeEE
Q 024586            1 MGKGGVGKSSTVNSII------GEKAVTVSTFQ--SEG---------P--RPVMVS----------------RSRAGFTL   45 (265)
Q Consensus         1 vG~tg~GKSSliN~ll------g~~~~~~~~~~--~~t---------~--~~~~~~----------------~~~~g~~v   45 (265)
                      +|.+||||||++|.|.      |.++..++.-.  +..         .  -+....                ....+..+
T Consensus       107 vG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~~~~~Dv  186 (504)
T 2j37_W          107 VGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNENFEI  186 (504)
T ss_dssp             ECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHHHHTTCCE
T ss_pred             ECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHHHHCCCcE
Confidence            5899999999999999      77654443210  000         0  000000                01267789


Q ss_pred             EEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCc-EEEEEeCccCC
Q 024586           46 NIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKR-ALIVLTHAQLS  123 (265)
Q Consensus        46 ~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~-~ivV~tk~D~~  123 (265)
                      .||||||....   +.....++........+|.+++|++.... .+  ....++.+.+.      .+ ..+|+||+|..
T Consensus       187 vIIDTpG~~~~---~~~l~~el~~~~~~i~pd~vllVvDa~~g-~~--~~~~a~~~~~~------~~i~gvVlNK~D~~  253 (504)
T 2j37_W          187 IIVDTSGRHKQ---EDSLFEEMLQVANAIQPDNIVYVMDASIG-QA--CEAQAKAFKDK------VDVASVIVTKLDGH  253 (504)
T ss_dssp             EEEEECCCCTT---CHHHHHHHHHHHHHHCCSEEEEEEETTCC-TT--HHHHHHHHHHH------HCCCCEEEECTTSC
T ss_pred             EEEeCCCCccc---chhHHHHHHHHHhhhcCceEEEEEecccc-cc--HHHHHHHHHhh------cCceEEEEeCCccc
Confidence            99999998643   22333333322211268999999655431 22  33444444432      45 48999999985

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.51  E-value=4.4e-08  Score=87.16  Aligned_cols=61  Identities=20%  Similarity=0.211  Sum_probs=35.3

Q ss_pred             eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHH-HHHHHhcCcCcCCcEEEEEe
Q 024586           40 RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQIT-RAITDNFGEQIWKRALIVLT  118 (265)
Q Consensus        40 ~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l-~~l~~~~g~~~~~~~ivV~t  118 (265)
                      ..|..+.++||||+.+..    .   .+.     ..+|++++|++...  .  .+.+.+ +.+.+       .+.++|+|
T Consensus       145 ~~~~~~iliDT~Gi~~~~----~---~v~-----~~~d~vl~v~d~~~--~--~~~~~i~~~i~~-------~~~ivvlN  201 (337)
T 2qm8_A          145 AAGFDVILVETVGVGQSE----T---AVA-----DLTDFFLVLMLPGA--G--DELQGIKKGIFE-------LADMIAVN  201 (337)
T ss_dssp             HTTCCEEEEEECSSSSCH----H---HHH-----TTSSEEEEEECSCC----------CCTTHHH-------HCSEEEEE
T ss_pred             cCCCCEEEEECCCCCcch----h---hHH-----hhCCEEEEEEcCCC--c--ccHHHHHHHHhc-------cccEEEEE
Confidence            368899999999996531    1   111     37899999954431  1  111111 11111       35678889


Q ss_pred             CccCC
Q 024586          119 HAQLS  123 (265)
Q Consensus       119 k~D~~  123 (265)
                      |+|+.
T Consensus       202 K~Dl~  206 (337)
T 2qm8_A          202 KADDG  206 (337)
T ss_dssp             CCSTT
T ss_pred             chhcc
Confidence            99974

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.47  E-value=9e-07  Score=84.70  Aligned_cols=76  Identities=22%  Similarity=0.251  Sum_probs=39.4

Q ss_pred             eEEEEEeCCCCCCC--CCCc----HHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEE
Q 024586           43 FTLNIVDTPGLIEG--GYVN----YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIV  116 (265)
Q Consensus        43 ~~v~iiDTPG~~~~--~~~~----~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV  116 (265)
                      ..+.++|.||+...  ...+    ....+.+..++.. +..+++.+...+..-.+..   .++.+...-...  .++|+|
T Consensus       147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~-~~~iil~vvt~~~d~a~~~---~l~la~~v~~~g--~rtI~V  220 (608)
T 3szr_A          147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQR-QETISLVVVPSNVDIATTE---ALSMAQEVDPEG--DRTIGI  220 (608)
T ss_dssp             CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTS-SSCCEEEEEESSSCTTTCH---HHHHHHHHCSSC--CSEEEE
T ss_pred             CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhc-CCCCceEEEeccchhccHH---HHHHHHHHhhcC--CceEEE
Confidence            35899999998753  2222    2444555554432 3345555544443212222   333343432222  789999


Q ss_pred             EeCccCCC
Q 024586          117 LTHAQLSL  124 (265)
Q Consensus       117 ~tk~D~~~  124 (265)
                      +||.|+..
T Consensus       221 lTK~Dlv~  228 (608)
T 3szr_A          221 LTKPDLVD  228 (608)
T ss_dssp             EECGGGSS
T ss_pred             ecchhhcC
Confidence            99999864

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=98.44  E-value=1e-07  Score=91.66  Aligned_cols=108  Identities=14%  Similarity=0.131  Sum_probs=73.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCc-----cc------ccCCC------CCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH
Q 024586            1 MGKGGVGKSSTVNSIIGEKA-----VT------VSTFQ------SEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA   63 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~-----~~------~~~~~------~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~   63 (265)
                      +|..++|||||..+|+-...     ..      ..++.      +.|......+..+++..+++|||||..|..      
T Consensus         8 iaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~------   81 (638)
T 3j25_A            8 LAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL------   81 (638)
T ss_dssp             ECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH------
T ss_pred             EcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH------
Confidence            57889999999999973211     01      11110      233444445678899999999999997642      


Q ss_pred             HHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           64 IQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        64 ~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                       .++.+.+  +-+|..|+|++... .+..+.+..++...+..     .|.++++||.|..
T Consensus        82 -~Ev~raL--~~~DgavlVVDa~~-GV~~qT~~v~~~a~~~~-----lp~i~~INKmDr~  132 (638)
T 3j25_A           82 -AEVYRSL--SVLDGAILLISAKD-GVQAQTRILFHALRKMG-----IPTIFFINKIDQN  132 (638)
T ss_dssp             -HHHHHHH--TTCSEEECCEESSC-TTCSHHHHHHHHHHHHT-----CSCEECCEECCSS
T ss_pred             -HHHHHHH--HHhCEEEEEEeCCC-CCcHHHHHHHHHHHHcC-----CCeEEEEeccccc
Confidence             2333333  37799999966543 47777778888777764     7889999999974

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=98.42  E-value=1.4e-07  Score=80.03  Aligned_cols=24  Identities=25%  Similarity=0.369  Sum_probs=19.7

Q ss_pred             CCCCCCCHHHHHHHHh-----CCCccccc
Q 024586            1 MGKGGVGKSSTVNSII-----GEKAVTVS   24 (265)
Q Consensus         1 vG~tg~GKSSliN~ll-----g~~~~~~~   24 (265)
                      +|++||||||+++.|.     |.++..+.
T Consensus        20 ~GkgGvGKTTl~~~La~~l~~g~~v~vvd   48 (262)
T 1yrb_A           20 VGTAGSGKTTLTGEFGRYLEDNYKVAYVN   48 (262)
T ss_dssp             ECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred             eCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence            4899999999999998     77765443

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=98.41  E-value=2.4e-06  Score=83.19  Aligned_cols=116  Identities=12%  Similarity=0.156  Sum_probs=72.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcc-----c------ccCC------CCCCCccEEEEeee-------CCeEEEEEeCCCCCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAV-----T------VSTF------QSEGPRPVMVSRSR-------AGFTLNIVDTPGLIEG   56 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~-----~------~~~~------~~~t~~~~~~~~~~-------~g~~v~iiDTPG~~~~   56 (265)
                      +|..++|||||..+|+-....     .      ..++      .+.|......+..+       ++..+++|||||..|.
T Consensus        19 iaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTPGHvDF   98 (709)
T 4fn5_A           19 CAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDF   98 (709)
T ss_dssp             ECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCCSCTTC
T ss_pred             EcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCCCCccc
Confidence            578899999999999832110     0      1110      12232333334444       3578999999999765


Q ss_pred             CCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHHHHH
Q 024586           57 GYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFC  134 (265)
Q Consensus        57 ~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~~~~  134 (265)
                      .   .+....++      -+|..|+|++... .+..+...+++...+..     .|.++++||.|..   ..+++..+
T Consensus        99 ~---~Ev~~aLr------~~DgavlvVDave-GV~~qT~~v~~~a~~~~-----lp~i~~iNKiDr~---~a~~~~~~  158 (709)
T 4fn5_A           99 T---IEVERSLR------VLDGAVVVFCGTS-GVEPQSETVWRQANKYG-----VPRIVYVNKMDRQ---GANFLRVV  158 (709)
T ss_dssp             H---HHHHHHHH------HCSEEEEEEETTT-CSCHHHHHHHHHHHHHT-----CCEEEEEECSSST---TCCHHHHH
T ss_pred             H---HHHHHHHH------HhCeEEEEEECCC-CCchhHHHHHHHHHHcC-----CCeEEEEcccccc---CccHHHHH
Confidence            3   23333443      5689888865543 47888888888877765     8999999999973   34444444

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.32  E-value=9.6e-07  Score=81.05  Aligned_cols=72  Identities=18%  Similarity=0.110  Sum_probs=45.2

Q ss_pred             CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCc
Q 024586           41 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA  120 (265)
Q Consensus        41 ~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~  120 (265)
                      .+..+.||||||...   .+.....+++.......+|.+++|++...   ........+.+.+..     ....+|+||.
T Consensus       181 ~~~DvVIIDTaGrl~---~d~~lm~el~~i~~~~~pd~vlLVvDA~~---gq~a~~~a~~f~~~~-----~i~gVIlTKl  249 (443)
T 3dm5_A          181 KGVDIIIVDTAGRHK---EDKALIEEMKQISNVIHPHEVILVIDGTI---GQQAYNQALAFKEAT-----PIGSIIVTKL  249 (443)
T ss_dssp             TTCSEEEEECCCCSS---CCHHHHHHHHHHHHHHCCSEEEEEEEGGG---GGGHHHHHHHHHHSC-----TTEEEEEECC
T ss_pred             CCCCEEEEECCCccc---chHHHHHHHHHHHHhhcCceEEEEEeCCC---chhHHHHHHHHHhhC-----CCeEEEEECC
Confidence            356799999999753   33445555555444446899999954432   223334444444433     5678999999


Q ss_pred             cCC
Q 024586          121 QLS  123 (265)
Q Consensus       121 D~~  123 (265)
                      |..
T Consensus       250 D~~  252 (443)
T 3dm5_A          250 DGS  252 (443)
T ss_dssp             SSC
T ss_pred             CCc
Confidence            984

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=98.26  E-value=2e-07  Score=77.07  Aligned_cols=18  Identities=33%  Similarity=0.488  Sum_probs=16.4

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|.+|+|||||+|.|++.
T Consensus        36 ~G~~g~GKTTl~~~l~~~   53 (221)
T 2wsm_A           36 MGAIGSGKTLLIERTIER   53 (221)
T ss_dssp             EECTTSCHHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHHH
Confidence            589999999999999975

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.24  E-value=1.2e-06  Score=80.40  Aligned_cols=73  Identities=16%  Similarity=0.082  Sum_probs=42.2

Q ss_pred             CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCc
Q 024586           41 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA  120 (265)
Q Consensus        41 ~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~  120 (265)
                      .+..+.||||||...   .+......+......-.+|.+++|++.... .  .....+    +.|.........+|+||+
T Consensus       179 ~~~D~vIIDT~G~~~---~~~~l~~~l~~i~~~~~~d~vllVvda~~g-~--~~~~~~----~~~~~~~~~i~gvVlnK~  248 (432)
T 2v3c_C          179 KKADVLIIDTAGRHK---EEKGLLEEMKQIKEITNPDEIILVIDGTIG-Q--QAGIQA----KAFKEAVGEIGSIIVTKL  248 (432)
T ss_dssp             SSCSEEEEECCCSCS---SHHHHHHHHHHTTSSSCCSEEEEEEEGGGG-G--GHHHHH----HHHHTTSCSCEEEEEECS
T ss_pred             hCCCEEEEcCCCCcc---ccHHHHHHHHHHHHHhcCcceeEEeecccc-H--HHHHHH----HHHhhcccCCeEEEEeCC
Confidence            566789999999853   233445555443333468999999554321 1  112222    223222102388999999


Q ss_pred             cCC
Q 024586          121 QLS  123 (265)
Q Consensus       121 D~~  123 (265)
                      |..
T Consensus       249 D~~  251 (432)
T 2v3c_C          249 DGS  251 (432)
T ss_dssp             SSC
T ss_pred             CCc
Confidence            974

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.12  E-value=4.2e-06  Score=76.68  Aligned_cols=73  Identities=14%  Similarity=0.120  Sum_probs=43.5

Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCcc
Q 024586           42 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ  121 (265)
Q Consensus        42 g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D  121 (265)
                      +..+.|+||||..... .+.....++........+|.+++|++...   ........+.+.+..     ....+|+||.|
T Consensus       179 ~~DvvIIDTaGr~~~~-~d~~lm~el~~i~~~~~pd~vlLVlDa~~---gq~a~~~a~~f~~~~-----~~~gVIlTKlD  249 (433)
T 3kl4_A          179 KMDIIIVDTAGRHGYG-EETKLLEEMKEMYDVLKPDDVILVIDASI---GQKAYDLASRFHQAS-----PIGSVIITKMD  249 (433)
T ss_dssp             TCSEEEEEECCCSSSC-CTTHHHHHHHHHHHHHCCSEEEEEEEGGG---GGGGHHHHHHHHHHC-----SSEEEEEECGG
T ss_pred             CCCEEEEECCCCcccc-CCHHHHHHHHHHHHhhCCcceEEEEeCcc---chHHHHHHHHHhccc-----CCcEEEEeccc
Confidence            5678999999974310 22334444444332235688888844332   123344555555544     56889999999


Q ss_pred             CC
Q 024586          122 LS  123 (265)
Q Consensus       122 ~~  123 (265)
                      ..
T Consensus       250 ~~  251 (433)
T 3kl4_A          250 GT  251 (433)
T ss_dssp             GC
T ss_pred             cc
Confidence            74

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.96  E-value=9.3e-06  Score=74.66  Aligned_cols=97  Identities=16%  Similarity=0.147  Sum_probs=52.6

Q ss_pred             CCCCCCCHHHHHHHHhCC---------------CcccccCCCCCCCccEEEEeee---------C--CeEEEEEeCCCCC
Q 024586            1 MGKGGVGKSSTVNSIIGE---------------KAVTVSTFQSEGPRPVMVSRSR---------A--GFTLNIVDTPGLI   54 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~---------------~~~~~~~~~~~t~~~~~~~~~~---------~--g~~v~iiDTPG~~   54 (265)
                      +|.+++|||+|+|.|+|.               .....+ ..++|..++.+-..+         .  ...+.++||||++
T Consensus        73 ~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~-~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvllDTeG~~  151 (447)
T 3q5d_A           73 AGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFS-WRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQGTF  151 (447)
T ss_dssp             EESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSC-SCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEEEEECCC
T ss_pred             ECCCCCcHHHHHHHHhhhcccccccccccccccccceec-CCCCCCCceeEEEEecCccccccCCCCcceEEEEcCCccc
Confidence            599999999999999974               111111 122344444333322         2  3578999999998


Q ss_pred             CCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHH
Q 024586           55 EGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITD  103 (265)
Q Consensus        55 ~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~  103 (265)
                      +... +.+.-..|-. +..-=.++++|-  +.. .++..+.+.++.+.+
T Consensus       152 ~~~~-~~~~d~~ifa-l~~lLSs~~IyN--~~~-~i~~~~l~~L~~~~e  195 (447)
T 3q5d_A          152 DSQS-TLRDSATVFA-LSTMISSIQVYN--LSQ-NVQEDDLQHLQLFTE  195 (447)
T ss_dssp             SSHH-HHHHHHHHHH-HHHHHCSEEEEE--ESS-SCCHHHHHHHHHHHH
T ss_pred             cccc-chhhhHHHHH-HHHHHhhHHHHh--hcc-cccHHHHHHHHHHHH
Confidence            7642 1111111111 111113566655  332 567777776666544

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.82  E-value=5.7e-05  Score=65.79  Aligned_cols=74  Identities=16%  Similarity=0.134  Sum_probs=40.9

Q ss_pred             CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCc
Q 024586           41 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA  120 (265)
Q Consensus        41 ~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~  120 (265)
                      .+..+.||||||..... .++....+++.......+|.+++|++...   .......++.+.+.     .....+|+||.
T Consensus       179 ~~~D~ViIDTpg~~~~~-~~~~l~~el~~i~~~~~~d~vllVvda~~---g~~~~~~~~~~~~~-----~~i~gvVlnk~  249 (297)
T 1j8m_F          179 EKMEIIIVDTAGRHGYG-EEAALLEEMKNIYEAIKPDEVTLVIDASI---GQKAYDLASKFNQA-----SKIGTIIITKM  249 (297)
T ss_dssp             TTCSEEEEECCCSCCTT-CHHHHHHHHHHHHHHHCCSEEEEEEEGGG---GGGHHHHHHHHHHT-----CTTEEEEEECG
T ss_pred             CCCCEEEEeCCCCcccc-cHHHHHHHHHHHHHHhcCCEEEEEeeCCc---hHHHHHHHHHHHhh-----CCCCEEEEeCC
Confidence            45678999999986410 22233333332212226788888855442   12223333333331     13478999999


Q ss_pred             cCC
Q 024586          121 QLS  123 (265)
Q Consensus       121 D~~  123 (265)
                      |..
T Consensus       250 D~~  252 (297)
T 1j8m_F          250 DGT  252 (297)
T ss_dssp             GGC
T ss_pred             CCC
Confidence            974

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.66  E-value=8.9e-06  Score=71.26  Aligned_cols=53  Identities=26%  Similarity=0.354  Sum_probs=28.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCC-------CCCCccEEEEeeeCCeEEEEEeCCCCCCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQ-------SEGPRPVMVSRSRAGFTLNIVDTPGLIEGG   57 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~-------~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~   57 (265)
                      +|++|||||||+|+|.|.....++...       .+|.......  ..  .-.++||||+....
T Consensus       179 vG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~--~~--~g~v~dtpg~~~~~  238 (307)
T 1t9h_A          179 AGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIH--TS--GGLVADTPGFSSLE  238 (307)
T ss_dssp             EESHHHHHHHHHHHHCC-------------------CCCCCEEE--ET--TEEEESSCSCSSCC
T ss_pred             ECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhh--cC--CEEEecCCCccccc
Confidence            599999999999999997543333322       2332222111  11  13689999997543

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.64  E-value=8.7e-05  Score=68.01  Aligned_cols=72  Identities=17%  Similarity=0.114  Sum_probs=39.8

Q ss_pred             CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCc
Q 024586           41 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA  120 (265)
Q Consensus        41 ~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~  120 (265)
                      .+..+.||||||....   +......+........+|.+++|++....   ......++.+....     ...-+|+||.
T Consensus       182 ~~~D~VIIDTpG~l~~---~~~l~~~L~~~~~~~~p~~vllVvda~~g---~~~~~~~~~f~~~l-----~i~gvVlnK~  250 (433)
T 2xxa_A          182 KFYDVLLVDTAGRLHV---DEAMMDEIKQVHASINPVETLFVVDAMTG---QDAANTAKAFNEAL-----PLTGVVLTKV  250 (433)
T ss_dssp             TTCSEEEEECCCCCTT---CHHHHHHHHHHHHHSCCSEEEEEEETTBC---TTHHHHHHHHHHHS-----CCCCEEEECT
T ss_pred             CCCCEEEEECCCcccc---cHHHHHHHHHHHHhhcCcceeEEeecchh---HHHHHHHHHHhccC-----CCeEEEEecC
Confidence            4667999999997532   23333444332222367888888654421   12223333333221     2245799999


Q ss_pred             cCC
Q 024586          121 QLS  123 (265)
Q Consensus       121 D~~  123 (265)
                      |..
T Consensus       251 D~~  253 (433)
T 2xxa_A          251 DGD  253 (433)
T ss_dssp             TSS
T ss_pred             CCC
Confidence            974

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.63  E-value=0.00011  Score=64.92  Aligned_cols=71  Identities=20%  Similarity=0.251  Sum_probs=40.4

Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCcc
Q 024586           42 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ  121 (265)
Q Consensus        42 g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D  121 (265)
                      +..+.++||+|........-..+..+.+.+   .+|-.+++.+...   ...-...++.+.+..     ...++++||.|
T Consensus       211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral---~~de~llvLDa~t---~~~~~~~~~~~~~~~-----~it~iilTKlD  279 (328)
T 3e70_C          211 GIDVVLIDTAGRSETNRNLMDEMKKIARVT---KPNLVIFVGDALA---GNAIVEQARQFNEAV-----KIDGIILTKLD  279 (328)
T ss_dssp             TCSEEEEEECCSCCTTTCHHHHHHHHHHHH---CCSEEEEEEEGGG---TTHHHHHHHHHHHHS-----CCCEEEEECGG
T ss_pred             cchhhHHhhccchhHHHHHHHHHHHHHHHh---cCCCCEEEEecHH---HHHHHHHHHHHHHhc-----CCCEEEEeCcC
Confidence            345678999998543322222333344333   4688888844332   123334445555443     45689999999


Q ss_pred             CC
Q 024586          122 LS  123 (265)
Q Consensus       122 ~~  123 (265)
                      ..
T Consensus       280 ~~  281 (328)
T 3e70_C          280 AD  281 (328)
T ss_dssp             GC
T ss_pred             Cc
Confidence            74

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.63  E-value=0.00021  Score=62.42  Aligned_cols=74  Identities=14%  Similarity=0.125  Sum_probs=39.3

Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHHHHH---hcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEe
Q 024586           42 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFL---LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLT  118 (265)
Q Consensus        42 g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l---~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~t  118 (265)
                      +..+.++||+|........-..++.++..+   ....++.++++.+...   .......++.+.+..     ..+++++|
T Consensus       184 ~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t---~~~~~~~~~~~~~~~-----~~t~iivT  255 (304)
T 1rj9_A          184 GYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVT---GQNGLEQAKKFHEAV-----GLTGVIVT  255 (304)
T ss_dssp             TCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTB---CTHHHHHHHHHHHHH-----CCSEEEEE
T ss_pred             CCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHH---HHHHHHHHHHHHHHc-----CCcEEEEE
Confidence            345679999998543211111122222222   1246787777744332   233344555555444     45789999


Q ss_pred             CccCC
Q 024586          119 HAQLS  123 (265)
Q Consensus       119 k~D~~  123 (265)
                      |.|..
T Consensus       256 h~d~~  260 (304)
T 1rj9_A          256 KLDGT  260 (304)
T ss_dssp             CTTSS
T ss_pred             CCccc
Confidence            99864

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.55  E-value=7.8e-05  Score=65.03  Aligned_cols=52  Identities=21%  Similarity=0.272  Sum_probs=30.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCC-------CCCccEEEEeeeCCeEEEEEeCCCCCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQS-------EGPRPVMVSRSRAGFTLNIVDTPGLIEG   56 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~-------~t~~~~~~~~~~~g~~v~iiDTPG~~~~   56 (265)
                      +|++|+|||||+|+|. ......+....       +|......  ...+. -.++||||+...
T Consensus       171 ~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~--~~~~~-g~v~d~pg~~~~  229 (302)
T 2yv5_A          171 AGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLI--PFGKG-SFVGDTPGFSKV  229 (302)
T ss_dssp             ECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEE--EETTT-EEEESSCCCSSC
T ss_pred             ECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEE--EcCCC-cEEEECcCcCcC
Confidence            5999999999999999 64333333221       22222211  11111 258999998643

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=97.49  E-value=0.00023  Score=66.02  Aligned_cols=72  Identities=13%  Similarity=0.143  Sum_probs=40.4

Q ss_pred             CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH---h---cCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEE
Q 024586           41 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL---L---NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRAL  114 (265)
Q Consensus        41 ~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l---~---~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~i  114 (265)
                      .+..+.++||+|....   .......+++..   .   ...+|-+|+|++...   .......++.+.+..     ....
T Consensus       374 ~~~DvVLIDTaGrl~~---~~~lm~EL~kiv~iar~l~~~~P~evLLvLDatt---Gq~al~~ak~f~~~~-----~itg  442 (503)
T 2yhs_A          374 RNIDVLIADTAGRLQN---KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDAST---GQNAVSQAKLFHEAV-----GLTG  442 (503)
T ss_dssp             TTCSEEEECCCCSCCC---HHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGG---THHHHHHHHHHHHHT-----CCSE
T ss_pred             cCCCEEEEeCCCccch---hhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcc---cHHHHHHHHHHHhhc-----CCCE
Confidence            3456889999998533   223333333321   1   124677777844321   233344455555544     3467


Q ss_pred             EEEeCccCC
Q 024586          115 IVLTHAQLS  123 (265)
Q Consensus       115 vV~tk~D~~  123 (265)
                      +|+||.|..
T Consensus       443 vIlTKLD~t  451 (503)
T 2yhs_A          443 ITLTKLDGT  451 (503)
T ss_dssp             EEEECGGGC
T ss_pred             EEEEcCCCc
Confidence            899999974

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.45  E-value=0.0001  Score=64.20  Aligned_cols=54  Identities=30%  Similarity=0.302  Sum_probs=30.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCC-------CCCCccEEEEeeeCCeEEEEEeCCCCCCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQ-------SEGPRPVMVSRSRAGFTLNIVDTPGLIEGG   57 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~-------~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~   57 (265)
                      +|++|+|||||+|+|.|......+...       .+|........  .. --.++||||+....
T Consensus       175 ~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~--~~-~g~v~q~p~~~~~~  235 (301)
T 1u0l_A          175 AGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKF--DF-GGYVVDTPGFANLE  235 (301)
T ss_dssp             ECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEEC--TT-SCEEESSCSSTTCC
T ss_pred             ECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEc--CC-CCEEEECcCCCccC
Confidence            599999999999999997643333221       12222211111  11 12589999986544

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.41  E-value=5.6e-05  Score=67.54  Aligned_cols=52  Identities=27%  Similarity=0.516  Sum_probs=30.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCc-ccccCCCC-------CCCccEEEEeeeCCeEEEEEeCCCCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEKA-VTVSTFQS-------EGPRPVMVSRSRAGFTLNIVDTPGLIE   55 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~-~~~~~~~~-------~t~~~~~~~~~~~g~~v~iiDTPG~~~   55 (265)
                      +|++|+|||||+|.|+|... ..++....       +|......... .+  ..++||||+.+
T Consensus       221 vG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~-q~--~~l~dtpgv~e  280 (358)
T 2rcn_A          221 AGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFP-HG--GDVIDSPGVRE  280 (358)
T ss_dssp             ECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECT-TS--CEEEECHHHHT
T ss_pred             ECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEEC-CC--CEecCcccHHH
Confidence            69999999999999999764 33333211       12222222221 22  24799999854

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.35  E-value=0.00021  Score=62.19  Aligned_cols=72  Identities=14%  Similarity=0.066  Sum_probs=40.2

Q ss_pred             CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCc
Q 024586           41 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA  120 (265)
Q Consensus        41 ~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~  120 (265)
                      .+..+.|+||||...   .....+..+...+....+|.+++|++...   .   ...+..+.+.|..  ....-+|+||.
T Consensus       181 ~~~dlvIiDT~G~~~---~~~~~~~el~~~l~~~~~~~~~lVl~at~---~---~~~~~~~~~~~~~--l~~~giVltk~  249 (296)
T 2px0_A          181 SEYDHVFVDTAGRNF---KDPQYIDELKETIPFESSIQSFLVLSATA---K---YEDMKHIVKRFSS--VPVNQYIFTKI  249 (296)
T ss_dssp             GGSSEEEEECCCCCT---TSHHHHHHHHHHSCCCTTEEEEEEEETTB---C---HHHHHHHTTTTSS--SCCCEEEEECT
T ss_pred             cCCCEEEEeCCCCCh---hhHHHHHHHHHHHhhcCCCeEEEEEECCC---C---HHHHHHHHHHHhc--CCCCEEEEeCC
Confidence            455789999999853   23344444444433234677777754331   1   1223344444431  24456788999


Q ss_pred             cCC
Q 024586          121 QLS  123 (265)
Q Consensus       121 D~~  123 (265)
                      |..
T Consensus       250 D~~  252 (296)
T 2px0_A          250 DET  252 (296)
T ss_dssp             TTC
T ss_pred             Ccc
Confidence            974

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=97.12  E-value=0.0004  Score=62.13  Aligned_cols=78  Identities=13%  Similarity=0.109  Sum_probs=45.2

Q ss_pred             EEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCc-----------CCCHHHHHHHHHHHH
Q 024586           35 MVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVY-----------RVDNLDKQITRAITD  103 (265)
Q Consensus        35 ~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~-----------r~~~~d~~~l~~l~~  103 (265)
                      .....+++..+.+|||+|........       ..|+  .+++++|||++++.+           ++ .+-..+++.+..
T Consensus       193 ~~~~~~~~~~l~i~Dt~Gq~~~r~~w-------~~~f--~~~~~iIfv~dls~~dq~l~ed~~~n~~-~es~~~~~~i~~  262 (362)
T 1zcb_A          193 EYDFEIKNVPFKMVDVGGQRSERKRW-------FECF--DSVTSILFLVSSSEFDQVLMEDRQTNRL-TESLNIFETIVN  262 (362)
T ss_dssp             EEEEEETTEEEEEEEECC-------C-------TTSC--TTCCEEEEEEETTCTTCEETTEEEEEHH-HHHHHHHHHHHT
T ss_pred             EEEeeeCCeEEEEEeccchhhhhhhH-------HHHh--CCCCEEEEEEECccccccccccccccHH-HHHHHHHHHHhc
Confidence            34556778899999999984322111       1111  488999999888752           12 122334444443


Q ss_pred             hcCcCcCCcEEEEEeCccCC
Q 024586          104 NFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus       104 ~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ... -...|+|+|+||+|+.
T Consensus       263 ~~~-~~~~piILv~NK~DL~  281 (362)
T 1zcb_A          263 NRV-FSNVSIILFLNKTDLL  281 (362)
T ss_dssp             CGG-GTTSEEEEEEECHHHH
T ss_pred             chh-hCCCCEEEEEEChhhh
Confidence            210 0127899999999984

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.07  E-value=0.00022  Score=62.31  Aligned_cols=72  Identities=13%  Similarity=0.119  Sum_probs=38.6

Q ss_pred             CCeEEEEEeCCCCCCCCCCcHHHHHHHHH---HHh---cCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEE
Q 024586           41 AGFTLNIVDTPGLIEGGYVNYHAIQLIKR---FLL---NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRAL  114 (265)
Q Consensus        41 ~g~~v~iiDTPG~~~~~~~~~~~~~~i~~---~l~---~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~i  114 (265)
                      .+..+.|+||||..   .......+.++.   .+.   ...+|.+++|++...   .......++.+.+..     .-.-
T Consensus       185 ~~~dvvIiDtpg~~---~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t---~~~~l~~a~~~~~~~-----~i~g  253 (306)
T 1vma_A          185 RNKDVVIIDTAGRL---HTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATT---GQNGLVQAKIFKEAV-----NVTG  253 (306)
T ss_dssp             TTCSEEEEEECCCC---SCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGG---HHHHHHHHHHHHHHS-----CCCE
T ss_pred             cCCCEEEEECCCch---hhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCC---CHHHHHHHHHHHhcC-----CCCE
Confidence            34568999999963   223333333333   321   235788888854331   122222233333322     4566


Q ss_pred             EEEeCccCC
Q 024586          115 IVLTHAQLS  123 (265)
Q Consensus       115 vV~tk~D~~  123 (265)
                      +|+||.|..
T Consensus       254 vVlTk~D~~  262 (306)
T 1vma_A          254 IILTKLDGT  262 (306)
T ss_dssp             EEEECGGGC
T ss_pred             EEEeCCCCc
Confidence            889999974

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=97.07  E-value=0.00041  Score=61.82  Aligned_cols=81  Identities=11%  Similarity=0.089  Sum_probs=48.3

Q ss_pred             cEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcC--------CC--HHHHHHHHHHH
Q 024586           33 PVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR--------VD--NLDKQITRAIT  102 (265)
Q Consensus        33 ~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r--------~~--~~d~~~l~~l~  102 (265)
                      .......+++..+.+|||+|........       ..|  -.++|++|||+++++..        ..  .+-..+++.+.
T Consensus       183 i~~~~~~~~~~~l~iwDt~GQe~~r~~w-------~~y--f~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~  253 (353)
T 1cip_A          183 IVETHFTFKDLHFKMFDVGGQRSERKKW-------IHC--FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSIC  253 (353)
T ss_dssp             EEEEEEEETTEEEEEEEECCSGGGGGGG-------GGG--CTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHH
T ss_pred             eEEEEEeeCCeeEEEEeCCCchhhhHHH-------HHH--HhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHH
Confidence            3344566778899999999974322111       112  24899999998887521        01  12223444443


Q ss_pred             HhcCcCcCCcEEEEEeCccCC
Q 024586          103 DNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus       103 ~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      .... -...|+++|+||+|+.
T Consensus       254 ~~~~-~~~~piiLv~NK~DL~  273 (353)
T 1cip_A          254 NNKW-FTDTSIILFLNKKDLF  273 (353)
T ss_dssp             TCGG-GTTSEEEEEEECHHHH
T ss_pred             cCcc-ccCCcEEEEEECcCch
Confidence            3110 0127899999999983

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.06  E-value=0.00027  Score=64.49  Aligned_cols=72  Identities=19%  Similarity=0.104  Sum_probs=39.6

Q ss_pred             CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCc
Q 024586           41 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA  120 (265)
Q Consensus        41 ~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~  120 (265)
                      .+..+.||||||....   +.....++......-.+|.+++|++..  .- ......++.+....     ...-+|+||.
T Consensus       179 ~~~DvVIIDTaG~l~~---d~~l~~el~~i~~~~~pd~vlLVvDa~--tg-q~av~~a~~f~~~l-----~i~GVIlTKl  247 (425)
T 2ffh_A          179 EARDLILVDTAGRLQI---DEPLMGELARLKEVLGPDEVLLVLDAM--TG-QEALSVARAFDEKV-----GVTGLVLTKL  247 (425)
T ss_dssp             TTCSEEEEECCCCSSC---CHHHHHHHHHHHHHHCCSEEEEEEEGG--GT-THHHHHHHHHHHHT-----CCCEEEEESG
T ss_pred             CCCCEEEEcCCCcccc---cHHHHHHHHHhhhccCCceEEEEEecc--ch-HHHHHHHHHHHhcC-----CceEEEEeCc
Confidence            4567899999997543   333333333322222678888885543  21 22223333333322     3467899999


Q ss_pred             cCC
Q 024586          121 QLS  123 (265)
Q Consensus       121 D~~  123 (265)
                      |..
T Consensus       248 D~~  250 (425)
T 2ffh_A          248 DGD  250 (425)
T ss_dssp             GGC
T ss_pred             CCc
Confidence            864

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=97.06  E-value=0.00077  Score=54.40  Aligned_cols=68  Identities=12%  Similarity=0.063  Sum_probs=41.7

Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCcc
Q 024586           42 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ  121 (265)
Q Consensus        42 g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D  121 (265)
                      ...+.|+|||+...     ......+.      .+|.++++...+..  ...-..+++.+.+........++.+|+|+.+
T Consensus        75 ~yD~viiD~~~~~~-----~~~~~~l~------~ad~viiv~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~  141 (206)
T 4dzz_A           75 DYDFAIVDGAGSLS-----VITSAAVM------VSDLVIIPVTPSPL--DFSAAGSVVTVLEAQAYSRKVEARFLITRKI  141 (206)
T ss_dssp             TSSEEEEECCSSSS-----HHHHHHHH------HCSEEEEEECSCTT--THHHHHHHHHHHTTSCGGGCCEEEEEECSBC
T ss_pred             CCCEEEEECCCCCC-----HHHHHHHH------HCCEEEEEecCCHH--HHHHHHHHHHHHHHHHhCCCCcEEEEEeccC
Confidence            35689999998642     23333333      46899999766542  2444556666665432122245689999998


Q ss_pred             C
Q 024586          122 L  122 (265)
Q Consensus       122 ~  122 (265)
                      .
T Consensus       142 ~  142 (206)
T 4dzz_A          142 E  142 (206)
T ss_dssp             T
T ss_pred             C
Confidence            5

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=97.02  E-value=0.00068  Score=61.40  Aligned_cols=78  Identities=10%  Similarity=0.079  Sum_probs=47.8

Q ss_pred             EEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCc----------CCCHHHHHHHHHHHHh
Q 024586           35 MVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVY----------RVDNLDKQITRAITDN  104 (265)
Q Consensus        35 ~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~----------r~~~~d~~~l~~l~~~  104 (265)
                      .....+++..+.+|||.|........       ..|+  .+++++++|++++.+          .--..-..+++.+...
T Consensus       209 ~~~~~~~~v~l~iwDtaGQe~~r~~w-------~~yf--~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~  279 (402)
T 1azs_C          209 ETKFQVDKVNFHMFDVGGQRDERRKW-------IQCF--NDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN  279 (402)
T ss_dssp             EEEEEETTEEEEEEEECCSGGGGGGG-------GGGT--TTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC
T ss_pred             EEEeecCCccceecccchhhhhhhhh-------Hhhc--cCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhc
Confidence            34556778999999999984322111       1121  488999999988751          1111223444444432


Q ss_pred             cCcCcCCcEEEEEeCccC
Q 024586          105 FGEQIWKRALIVLTHAQL  122 (265)
Q Consensus       105 ~g~~~~~~~ivV~tk~D~  122 (265)
                      .. ....++++|+||+|+
T Consensus       280 ~~-~~~~piiLvgNK~DL  296 (402)
T 1azs_C          280 RW-LRTISVILFLNKQDL  296 (402)
T ss_dssp             TT-CSSCCEEEEEECHHH
T ss_pred             cc-CCCCeEEEEEEChhh
Confidence            11 112689999999998

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=96.94  E-value=0.0021  Score=56.84  Aligned_cols=80  Identities=16%  Similarity=0.134  Sum_probs=48.6

Q ss_pred             cEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCC-----------cCCCHHHHHHHHHH
Q 024586           33 PVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDV-----------YRVDNLDKQITRAI  101 (265)
Q Consensus        33 ~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~-----------~r~~~~d~~~l~~l  101 (265)
                      .......+++..+.+|||.|..       ........|.  .+++++|+|++++.           .++ .+-..+++.+
T Consensus       151 i~~~~~~~~~v~l~iwDtaGQe-------~~R~~w~~yy--~~a~~iIfV~diS~ydq~l~e~~~~nr~-~es~~~~~~i  220 (340)
T 4fid_A          151 IHEYDFVVKDIPFHLIDVGGQR-------SERKXWVSFF--SDVDCAIFVTSLAEYDMKLYEDGNTSRL-TESIAVFKDI  220 (340)
T ss_dssp             CEEEEEESSSCEEEEEECCSCH-------HHHHHHHTTS--CSCSEEEEEEEGGGTTCBCC--CCSBHH-HHHHHHHHHH
T ss_pred             eEEEEEEeeeeeeccccCCCcc-------cccccHHHHh--ccCCEEEEEEECCccccccccccccchH-HHHHHHHHHH
Confidence            3445566788899999999972       2222223232  58999999988862           112 1223344444


Q ss_pred             HHhcCcCcCCcEEEEEeCccCC
Q 024586          102 TDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus       102 ~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ..... -...|+++++||+|+.
T Consensus       221 ~~~~~-~~~~piiLv~NK~DL~  241 (340)
T 4fid_A          221 MTNEF-LKGAVKLIFLNKMDLF  241 (340)
T ss_dssp             HHCGG-GTTSEEEEEEECHHHH
T ss_pred             hhhhc-cCCCeEEEEEECchhh
Confidence            33211 0126899999999983

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.94  E-value=0.0044  Score=56.83  Aligned_cols=96  Identities=16%  Similarity=0.145  Sum_probs=52.6

Q ss_pred             CCCCCCCHHHHHHHHh-------C----------CCcccccC-CCCCCCccEEEEee-----eCC--eEEEEEeCCCCCC
Q 024586            1 MGKGGVGKSSTVNSII-------G----------EKAVTVST-FQSEGPRPVMVSRS-----RAG--FTLNIVDTPGLIE   55 (265)
Q Consensus         1 vG~tg~GKSSliN~ll-------g----------~~~~~~~~-~~~~t~~~~~~~~~-----~~g--~~v~iiDTPG~~~   55 (265)
                      +|..++|||+|+|.|+       |          ...+.+++ ..++|...-.....     ..|  ..+.++||.|+++
T Consensus        73 ~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllDTEG~~d  152 (457)
T 4ido_A           73 AGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQGTFD  152 (457)
T ss_dssp             EEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEEECCBTC
T ss_pred             ECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEeccCCCC
Confidence            5899999999999776       2          13334432 23445543332211     133  4689999999988


Q ss_pred             CCCCcH--HHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHH
Q 024586           56 GGYVNY--HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITD  103 (265)
Q Consensus        56 ~~~~~~--~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~  103 (265)
                      .....+  ..+=.+...+    .++++|=.  .. .+++.+.+-+..+.+
T Consensus       153 ~~~~~~~d~~ifaLa~LL----SS~~IyN~--~~-~i~~~~L~~L~~~te  195 (457)
T 4ido_A          153 SQSTLRDSATVFALSTMI----SSIQVYNL--SQ-NVQEDDLQHLQLFTE  195 (457)
T ss_dssp             TTCCHHHHHHHHHHHHHH----CSEEEEEE--ES-SCCHHHHHHHHHHHH
T ss_pred             cccCccccHHHHHHHHHH----hhheeecc--cc-cCCHHHHHHHHHHHH
Confidence            755322  1111122222    25666652  22 466666666655443

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=96.87  E-value=0.0015  Score=57.29  Aligned_cols=72  Identities=14%  Similarity=0.218  Sum_probs=38.6

Q ss_pred             CCeEEEEEeCCCCCCCCCCcHHHHHHH---HHHHh---cCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEE
Q 024586           41 AGFTLNIVDTPGLIEGGYVNYHAIQLI---KRFLL---NKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRAL  114 (265)
Q Consensus        41 ~g~~v~iiDTPG~~~~~~~~~~~~~~i---~~~l~---~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~i  114 (265)
                      .+..+.||||||....   .+....++   ...+.   ...+|.+++|++...   .   ...++.+.. |.+. ....=
T Consensus       190 ~~yD~VIIDTpg~l~~---~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~---~---~~~l~~~~~-~~~~-~~i~G  258 (320)
T 1zu4_A          190 QNYDLLLIDTAGRLQN---KTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATT---G---QNGVIQAEE-FSKV-ADVSG  258 (320)
T ss_dssp             TTCSEEEEECCCCGGG---HHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGG---T---HHHHHHHHH-HTTT-SCCCE
T ss_pred             cCCCEEEEcCCCcccc---cHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC---c---HHHHHHHHH-Hhhc-CCCcE
Confidence            3556899999997432   22222232   22221   234788888854431   1   233444433 3322 13445


Q ss_pred             EEEeCccCC
Q 024586          115 IVLTHAQLS  123 (265)
Q Consensus       115 vV~tk~D~~  123 (265)
                      +|+||.|..
T Consensus       259 vVltk~d~~  267 (320)
T 1zu4_A          259 IILTKMDST  267 (320)
T ss_dssp             EEEECGGGC
T ss_pred             EEEeCCCCC
Confidence            889999964

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=96.83  E-value=6.6e-05  Score=61.48  Aligned_cols=51  Identities=20%  Similarity=0.350  Sum_probs=31.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCc-ccccCCCCCCCccEEEEeeeCCeEEEEEeCCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEKA-VTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGL   53 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~-~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~   53 (265)
                      +|++|+|||||+|.|++... ........+|..+.  ..+.+|..+.++|+..+
T Consensus        25 ~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~--~gE~~G~~y~fvs~~~f   76 (197)
T 3ney_A           25 IGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPR--KSEEDGKEYHFISTEEM   76 (197)
T ss_dssp             ECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCC--TTCCTTSSCEECCHHHH
T ss_pred             ECcCCCCHHHHHHHHHhhCCccEEeeecccccCCc--CCeeccccceeccHHHh
Confidence            59999999999999997642 12222333444433  23355665555555443

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=96.71  E-value=0.0011  Score=57.47  Aligned_cols=72  Identities=19%  Similarity=0.121  Sum_probs=38.8

Q ss_pred             CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCc
Q 024586           41 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA  120 (265)
Q Consensus        41 ~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~  120 (265)
                      .+..+.|+||||....   +......+........+|.+++|++...   .......++.+....     ...-+|+||.
T Consensus       179 ~~~D~viiDtpp~~~~---d~~~~~~l~~~~~~~~~~~~~lv~~~~~---~~~~~~~~~~~~~~~-----~i~givlnk~  247 (295)
T 1ls1_A          179 EARDLILVDTAGRLQI---DEPLMGELARLKEVLGPDEVLLVLDAMT---GQEALSVARAFDEKV-----GVTGLVLTKL  247 (295)
T ss_dssp             HTCCEEEEECCCCSSC---CHHHHHHHHHHHHHHCCSEEEEEEEGGG---THHHHHHHHHHHHHT-----CCCEEEEECG
T ss_pred             CCCCEEEEeCCCCccc---cHHHHHHHHHHhhhcCCCEEEEEEeCCC---cHHHHHHHHHHhhcC-----CCCEEEEECC
Confidence            3567899999987432   3333333333322225788888855432   122222333333221     3456899999


Q ss_pred             cCC
Q 024586          121 QLS  123 (265)
Q Consensus       121 D~~  123 (265)
                      |..
T Consensus       248 d~~  250 (295)
T 1ls1_A          248 DGD  250 (295)
T ss_dssp             GGC
T ss_pred             CCC
Confidence            874

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=96.62  E-value=0.0017  Score=57.22  Aligned_cols=80  Identities=8%  Similarity=0.076  Sum_probs=46.8

Q ss_pred             EEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecC--------CcCCCHHHHHHHHHHHHhc
Q 024586           34 VMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLD--------VYRVDNLDKQITRAITDNF  105 (265)
Q Consensus        34 ~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d--------~~r~~~~d~~~l~~l~~~~  105 (265)
                      .......++..+.+|||.|...       .......|.  .+++++++|++++        ...... -.+.++.+....
T Consensus       158 ~~~~~~~~~v~l~iwDtgGQe~-------~R~~w~~yf--~~~~~iIfV~dls~ydq~l~d~~~~nr-~~es~~~~~~i~  227 (327)
T 3ohm_A          158 IEYPFDLQSVIFRMVDVGGQRS-------ERRKWIHCF--ENVTSIMFLVALSEYDQVLVESDNENR-MEESKALFRTII  227 (327)
T ss_dssp             EEEEEEETTEEEEEEEECCSHH-------HHTTGGGGC--SSCSEEEEEEEGGGGGCBCSSCTTSBH-HHHHHHHHHHHH
T ss_pred             EEEEEEeeceeeEEEEcCCchh-------HHHHHHHHh--CCCCEEEEEEECccccccccccccHhH-HHHHHHHHHHHh
Confidence            4455667889999999999721       111111122  5899999998764        112221 122333333333


Q ss_pred             CcC--cCCcEEEEEeCccCC
Q 024586          106 GEQ--IWKRALIVLTHAQLS  123 (265)
Q Consensus       106 g~~--~~~~~ivV~tk~D~~  123 (265)
                      ...  ...|+++++||+|+.
T Consensus       228 ~~~~~~~~~iiL~~NK~DL~  247 (327)
T 3ohm_A          228 TYPWFQNSSVILFLNKKDLL  247 (327)
T ss_dssp             TSGGGTTCEEEEEEECHHHH
T ss_pred             hhhccCCceEEEEEECchhh
Confidence            211  127899999999984

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.61  E-value=0.0026  Score=55.33  Aligned_cols=18  Identities=22%  Similarity=0.516  Sum_probs=16.3

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|++|+||||+++.|.|.
T Consensus       106 vG~nGsGKTTll~~Lag~  123 (302)
T 3b9q_A          106 VGVNGGGKTTSLGKLAHR  123 (302)
T ss_dssp             ECCTTSCHHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHHH
Confidence            699999999999999863

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.59  E-value=0.0058  Score=54.46  Aligned_cols=18  Identities=22%  Similarity=0.516  Sum_probs=16.3

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|.+|+||||+++.|.|.
T Consensus       163 vG~nGsGKTTll~~Lag~  180 (359)
T 2og2_A          163 VGVNGGGKTTSLGKLAHR  180 (359)
T ss_dssp             ECCTTSCHHHHHHHHHHH
T ss_pred             EcCCCChHHHHHHHHHhh
Confidence            699999999999999863

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=96.54  E-value=0.0018  Score=57.61  Aligned_cols=71  Identities=8%  Similarity=0.064  Sum_probs=41.2

Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecC----------C-cCCCHHHHHHHHHHHHhcCcCcC
Q 024586           42 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLD----------V-YRVDNLDKQITRAITDNFGEQIW  110 (265)
Q Consensus        42 g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d----------~-~r~~~~d~~~l~~l~~~~g~~~~  110 (265)
                      ...+.+|||+|.........       .+  -.++|++++|++++          . .++ .+-..+++.+..... ...
T Consensus       182 ~v~l~iwDtaGQe~~r~~~~-------~y--~~~~~~iI~v~dis~ydq~l~e~~~~~s~-~~~~~~~~~i~~~~~-~~~  250 (354)
T 2xtz_A          182 GEVYRLFDVGGQRNERRKWI-------HL--FEGVTAVIFCAAISEYDQTLFEDEQKNRM-METKELFDWVLKQPC-FEK  250 (354)
T ss_dssp             --EEEEEEECCSTTGGGGTG-------GG--CTTEEEEEEEEEGGGTTCBCSSCTTSBHH-HHHHHHHHHHHTCGG-GSS
T ss_pred             ceeeEEEECCCchhhhHHHH-------HH--hCCCCEEEEEEECcccccccccccchhHH-HHHHHHHHHHHhccc-cCC
Confidence            36789999999854322211       11  14889999999885          1 112 122334444443211 012


Q ss_pred             CcEEEEEeCccCC
Q 024586          111 KRALIVLTHAQLS  123 (265)
Q Consensus       111 ~~~ivV~tk~D~~  123 (265)
                      .|+++|+||+|+.
T Consensus       251 ~piiLvgNK~DL~  263 (354)
T 2xtz_A          251 TSFMLFLNKFDIF  263 (354)
T ss_dssp             CEEEEEEECHHHH
T ss_pred             CeEEEEEECcchh
Confidence            7899999999983

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=95.88  E-value=0.0022  Score=52.00  Aligned_cols=18  Identities=33%  Similarity=0.612  Sum_probs=16.6

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|++|+|||||++.|.|.
T Consensus        10 vGpsGaGKSTLl~~L~~~   27 (198)
T 1lvg_A           10 SGPSGAGKSTLLKKLFQE   27 (198)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHhh
Confidence            699999999999999984

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=95.86  E-value=0.0023  Score=50.95  Aligned_cols=19  Identities=32%  Similarity=0.650  Sum_probs=17.0

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|||||||++.|.+..
T Consensus        11 ~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A           11 LGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             ECCTTSSHHHHHHHHHHHC
T ss_pred             ECCCCCCHHHHHHHHHhhC
Confidence            5999999999999999853

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=95.82  E-value=0.0011  Score=53.66  Aligned_cols=19  Identities=32%  Similarity=0.567  Sum_probs=16.8

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|+||||||||++.|+...
T Consensus         7 ~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            7 SGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             ECCTTSSHHHHHHHHHHHC
T ss_pred             ECCCCCCHHHHHHHHHHhC
Confidence            5999999999999998653

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=95.80  E-value=0.0024  Score=51.95  Aligned_cols=19  Identities=32%  Similarity=0.424  Sum_probs=17.2

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        26 ~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           26 SGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             ECSTTSSHHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHHhhC
Confidence            6999999999999999854

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=95.71  E-value=0.0035  Score=52.41  Aligned_cols=19  Identities=42%  Similarity=0.496  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|-.
T Consensus        37 iG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           37 MGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             ECSTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCcHHHHHHHHhcCC
Confidence            6999999999999999964

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=95.67  E-value=0.0089  Score=48.78  Aligned_cols=65  Identities=15%  Similarity=0.072  Sum_probs=38.2

Q ss_pred             CeEEEEEeCCCC-CCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCc
Q 024586           42 GFTLNIVDTPGL-IEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA  120 (265)
Q Consensus        42 g~~v~iiDTPG~-~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~  120 (265)
                      ...+.|+|||+. ...     .....+.      .+|.++++...+...+ ..-..+++.+.+..    ..++.+|+|+.
T Consensus        67 ~yD~viiD~p~~~~~~-----~~~~~l~------~aD~viiv~~~~~~~~-~~~~~~~~~l~~~~----~~~~~vv~N~~  130 (209)
T 3cwq_A           67 KYQNIVIDTQARPEDE-----DLEALAD------GCDLLVIPSTPDALAL-DALMLTIETLQKLG----NNRFRILLTII  130 (209)
T ss_dssp             GCSEEEEEEECCCSSS-----HHHHHHH------TSSEEEEEECSSHHHH-HHHHHHHHHHHHTC----SSSEEEEECSB
T ss_pred             cCCEEEEeCCCCcCcH-----HHHHHHH------HCCEEEEEecCCchhH-HHHHHHHHHHHhcc----CCCEEEEEEec
Confidence            456899999986 322     2222333      6799999965543211 11234445555432    14588999999


Q ss_pred             cC
Q 024586          121 QL  122 (265)
Q Consensus       121 D~  122 (265)
                      +.
T Consensus       131 ~~  132 (209)
T 3cwq_A          131 PP  132 (209)
T ss_dssp             CC
T ss_pred             CC
Confidence            86

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=95.52  E-value=0.0039  Score=51.74  Aligned_cols=19  Identities=26%  Similarity=0.302  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|-.
T Consensus        36 iG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           36 IGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             EECTTSCHHHHHHHHTTSS
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999999964

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=95.50  E-value=0.0038  Score=49.89  Aligned_cols=19  Identities=37%  Similarity=0.632  Sum_probs=17.1

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|.-
T Consensus         6 ~G~nGsGKTTLl~~l~g~l   24 (178)
T 1ye8_A            6 TGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             ECCTTSSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHh
Confidence            5999999999999999863

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=95.49  E-value=0.0038  Score=51.69  Aligned_cols=19  Identities=26%  Similarity=0.515  Sum_probs=17.3

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|+|..
T Consensus        22 ~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           22 SAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             ECCTTSCHHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHhccC
Confidence            5999999999999999864

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=95.48  E-value=0.0038  Score=51.44  Aligned_cols=19  Identities=32%  Similarity=0.635  Sum_probs=17.1

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        29 vGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           29 CGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             ECSTTSSHHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHHhhC
Confidence            5999999999999999853

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=95.48  E-value=0.02  Score=44.15  Aligned_cols=19  Identities=26%  Similarity=0.525  Sum_probs=17.0

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||+|++++.+.-
T Consensus        42 ~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           42 WGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             ESSSTTTTCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHH
Confidence            5999999999999999853

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=95.41  E-value=0.0052  Score=52.41  Aligned_cols=19  Identities=32%  Similarity=0.559  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|-.
T Consensus        43 iG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           43 IGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             ECCTTSCHHHHHHHHTSSS
T ss_pred             ECCCCCcHHHHHHHHhcCC
Confidence            6999999999999999964

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=95.41  E-value=0.0054  Score=51.47  Aligned_cols=19  Identities=37%  Similarity=0.513  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|-.
T Consensus        30 iG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           30 LGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             ECCTTSSHHHHHHHHHTSS
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999964

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=95.40  E-value=0.0054  Score=52.63  Aligned_cols=19  Identities=37%  Similarity=0.573  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|-.
T Consensus        40 iGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           40 LGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             ECCTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCCHHHHHHHHHcCC
Confidence            6999999999999999964

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=95.40  E-value=0.0053  Score=51.35  Aligned_cols=19  Identities=37%  Similarity=0.667  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|-.
T Consensus        37 ~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           37 VGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             ECSTTSSHHHHHHHHTTCS
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999999964

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=95.40  E-value=0.0054  Score=52.15  Aligned_cols=19  Identities=32%  Similarity=0.406  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|-.
T Consensus        38 iG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           38 IGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             ECCTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            6999999999999999964

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=95.39  E-value=0.0054  Score=51.98  Aligned_cols=19  Identities=42%  Similarity=0.643  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|-.
T Consensus        39 iG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           39 IGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             ECSTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            6999999999999999964

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=95.36  E-value=0.0044  Score=49.82  Aligned_cols=18  Identities=28%  Similarity=0.508  Sum_probs=16.7

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|++|+||||+++.|.|.
T Consensus        13 ~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A           13 SAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             ECCTTSCHHHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHHhh
Confidence            599999999999999985

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=95.33  E-value=0.006  Score=50.32  Aligned_cols=19  Identities=26%  Similarity=0.469  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|-.
T Consensus        41 iG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           41 HGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             ECCTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999999964

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=95.31  E-value=0.006  Score=51.18  Aligned_cols=19  Identities=26%  Similarity=0.246  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|-.
T Consensus        34 ~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           34 AGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             ECCTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999999964

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=95.29  E-value=0.006  Score=51.38  Aligned_cols=19  Identities=32%  Similarity=0.403  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|-.
T Consensus        41 ~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           41 VGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             ECSTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            6999999999999999964

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=95.27  E-value=0.0063  Score=50.59  Aligned_cols=19  Identities=42%  Similarity=0.643  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        40 ~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           40 AGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             ECCTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999964

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=95.24  E-value=0.026  Score=48.78  Aligned_cols=64  Identities=11%  Similarity=0.100  Sum_probs=39.2

Q ss_pred             EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCC-HHHHHHHHHHHHhcCcCcCCcEEEEEeCccC
Q 024586           44 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVD-NLDKQITRAITDNFGEQIWKRALIVLTHAQL  122 (265)
Q Consensus        44 ~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~-~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~  122 (265)
                      .+.+|||  .........       .+  ..++|++++|++++....+ ..-..++..+...     ..|+++|+||+|+
T Consensus        64 ~~~iwD~--qer~~~l~~-------~~--~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~-----~~piilv~NK~DL  127 (301)
T 1u0l_A           64 SGVIENV--LHRKNLLTK-------PH--VANVDQVILVVTVKMPETSTYIIDKFLVLAEKN-----ELETVMVINKMDL  127 (301)
T ss_dssp             SEEEEEE--CCCSCEETT-------TT--EESCCEEEEEECSSTTCCCHHHHHHHHHHHHHT-----TCEEEEEECCGGG
T ss_pred             eEEEEEE--ccccceeec-------cc--cccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHC-----CCCEEEEEeHHHc
Confidence            6889999  322221111       11  1488999999887753322 2223455544431     2799999999999


Q ss_pred             C
Q 024586          123 S  123 (265)
Q Consensus       123 ~  123 (265)
                      .
T Consensus       128 ~  128 (301)
T 1u0l_A          128 Y  128 (301)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=95.22  E-value=0.0066  Score=51.18  Aligned_cols=18  Identities=39%  Similarity=0.678  Sum_probs=17.0

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|++|+|||||++.|.|-
T Consensus        35 ~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           35 MGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             ECSTTSSHHHHHHHHHTC
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            599999999999999995

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=95.20  E-value=0.0068  Score=47.79  Aligned_cols=18  Identities=28%  Similarity=0.459  Sum_probs=15.6

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|++|+|||||++.+++.
T Consensus        15 ~G~nGsGKSTl~~~~~~~   32 (171)
T 4gp7_A           15 IGSSGSGKSTFAKKHFKP   32 (171)
T ss_dssp             ECCTTSCHHHHHHHHSCG
T ss_pred             ECCCCCCHHHHHHHHccC
Confidence            699999999999987653

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=95.20  E-value=0.0068  Score=51.62  Aligned_cols=19  Identities=26%  Similarity=0.387  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|-.
T Consensus        56 iG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           56 IGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             ECCTTSSHHHHHHHHTTSS
T ss_pred             EcCCCCcHHHHHHHHHcCC
Confidence            6999999999999999964

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=95.20  E-value=0.0069  Score=51.14  Aligned_cols=19  Identities=32%  Similarity=0.608  Sum_probs=17.6

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|-.
T Consensus        32 iG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           32 VGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             ECCTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCcHHHHHHHHhCCC
Confidence            5999999999999999974

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.19  E-value=0.0069  Score=51.35  Aligned_cols=19  Identities=32%  Similarity=0.482  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|-.
T Consensus        47 ~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           47 IGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             ECCTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999999964

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.19  E-value=0.0068  Score=50.77  Aligned_cols=19  Identities=37%  Similarity=0.705  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|-.
T Consensus        38 ~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           38 IGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             ECSTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999964

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=95.13  E-value=0.0074  Score=51.42  Aligned_cols=18  Identities=39%  Similarity=0.698  Sum_probs=17.1

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|++|+|||||++.|.|-
T Consensus        52 ~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           52 MGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             ECCTTSSHHHHHHHHHTC
T ss_pred             ECCCCCCHHHHHHHHhCC
Confidence            599999999999999996

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=95.11  E-value=0.0073  Score=51.25  Aligned_cols=19  Identities=26%  Similarity=0.354  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|-.
T Consensus        52 ~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           52 VGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             ECSTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCCHHHHHHHHhccC
Confidence            5999999999999999964

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=95.06  E-value=0.0077  Score=51.46  Aligned_cols=19  Identities=26%  Similarity=0.373  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|-.
T Consensus        51 ~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           51 VGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             ECSTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999999964

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=95.04  E-value=0.0079  Score=50.86  Aligned_cols=19  Identities=32%  Similarity=0.739  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|-.
T Consensus        37 ~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           37 LGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             ECCSSSSHHHHHHHHTTSS
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999964

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=95.03  E-value=0.0081  Score=51.59  Aligned_cols=19  Identities=26%  Similarity=0.452  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|-.
T Consensus        53 iG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           53 YGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             ECCTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCcHHHHHHHHhCCC
Confidence            6999999999999999964

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=95.03  E-value=0.008  Score=51.17  Aligned_cols=19  Identities=32%  Similarity=0.494  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|-.
T Consensus        39 iG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           39 AGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             ECSTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCcHHHHHHHHhCCC
Confidence            5999999999999999964

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=94.98  E-value=0.0078  Score=47.82  Aligned_cols=18  Identities=28%  Similarity=0.453  Sum_probs=16.8

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|.+|+||||+++.|.+.
T Consensus        15 ~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           15 SGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EECTTSCHHHHHHHHHTC
T ss_pred             ECCCCCCHHHHHHHHHhc
Confidence            599999999999999986

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=94.97  E-value=0.0068  Score=51.52  Aligned_cols=18  Identities=44%  Similarity=0.645  Sum_probs=16.6

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|++|+|||||++.|+|.
T Consensus        31 ~Gp~GsGKSTll~~l~g~   48 (261)
T 2eyu_A           31 TGPTGSGKSTTIASMIDY   48 (261)
T ss_dssp             ECSTTCSHHHHHHHHHHH
T ss_pred             ECCCCccHHHHHHHHHHh
Confidence            599999999999999984

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=94.80  E-value=0.0098  Score=48.40  Aligned_cols=19  Identities=26%  Similarity=0.559  Sum_probs=17.2

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+||||+++.|.+..
T Consensus        14 ~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A           14 SGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             ECCTTSCHHHHHHHHHHST
T ss_pred             ECcCCCCHHHHHHHHHhhC
Confidence            5999999999999999764

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=94.78  E-value=0.0068  Score=49.30  Aligned_cols=18  Identities=33%  Similarity=0.495  Sum_probs=16.6

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|++|+|||||++.|.|.
T Consensus        28 ~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A           28 SGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             ECCTTSCTHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999999885

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=94.75  E-value=0.0085  Score=46.95  Aligned_cols=19  Identities=21%  Similarity=0.366  Sum_probs=17.3

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|.-
T Consensus        39 ~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           39 NGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             ECSTTSSHHHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHHhC
Confidence            5999999999999999865

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=94.72  E-value=0.011  Score=50.30  Aligned_cols=19  Identities=32%  Similarity=0.587  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|-.
T Consensus        36 ~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           36 LGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             ECCTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999964

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=94.68  E-value=0.011  Score=52.71  Aligned_cols=19  Identities=26%  Similarity=0.454  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|-.
T Consensus        60 iGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           60 IGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             ECCTTSSHHHHHHHHHTSS
T ss_pred             EcCCCchHHHHHHHHhcCC
Confidence            6999999999999999964

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=94.61  E-value=0.0065  Score=49.85  Aligned_cols=18  Identities=22%  Similarity=0.326  Sum_probs=17.0

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|++|+|||||++.|.|.
T Consensus        28 iG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           28 LGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             ECCTTSSTTHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHhcC
Confidence            599999999999999986

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=94.55  E-value=0.0077  Score=52.47  Aligned_cols=19  Identities=26%  Similarity=0.429  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|+|--
T Consensus        86 vG~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           86 VGPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             ESSSCHHHHHHHHHHTTSS
T ss_pred             ECCCCchHHHHHHHHHcCC
Confidence            6999999999999999953

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=94.40  E-value=0.014  Score=51.88  Aligned_cols=19  Identities=32%  Similarity=0.618  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|-.
T Consensus        47 lGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           47 LGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             ECSTTSSHHHHHHHHHTSS
T ss_pred             ECCCCCcHHHHHHHHhCCC
Confidence            5999999999999999964

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=94.39  E-value=0.014  Score=52.32  Aligned_cols=19  Identities=37%  Similarity=0.627  Sum_probs=17.6

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|-.
T Consensus        35 lGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           35 VGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             ECCTTSSHHHHHHHHHTSS
T ss_pred             EcCCCchHHHHHHHHHcCC
Confidence            6999999999999999964

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=94.37  E-value=0.012  Score=50.82  Aligned_cols=19  Identities=42%  Similarity=0.643  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|-.
T Consensus        70 ~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           70 AGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             EESTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCcHHHHHHHHhcCC
Confidence            5999999999999999964

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=94.32  E-value=0.011  Score=51.34  Aligned_cols=18  Identities=39%  Similarity=0.447  Sum_probs=16.4

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|++|+|||||++.|+|-
T Consensus       132 vGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          132 IGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             ECSSSSSHHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHhhh
Confidence            699999999999999963

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=94.32  E-value=0.0099  Score=48.11  Aligned_cols=18  Identities=17%  Similarity=0.326  Sum_probs=16.4

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|.+|+||||+++.|.|.
T Consensus        12 ~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A           12 AGGTASGKTTLAQALART   29 (211)
T ss_dssp             EESTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999999884

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=94.30  E-value=0.013  Score=52.24  Aligned_cols=19  Identities=26%  Similarity=0.620  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|-.
T Consensus        36 lGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           36 IGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             EESTTSSHHHHHHHHHTSS
T ss_pred             ECCCCchHHHHHHHHhcCC
Confidence            5999999999999999964

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=94.29  E-value=0.016  Score=51.74  Aligned_cols=19  Identities=37%  Similarity=0.595  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|-.
T Consensus        35 lGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           35 LGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             ECCTTSSHHHHHHHHHTSS
T ss_pred             ECCCCchHHHHHHHHhcCC
Confidence            5999999999999999964

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=94.27  E-value=0.016  Score=51.68  Aligned_cols=19  Identities=32%  Similarity=0.567  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|-.
T Consensus        35 lGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           35 LGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             ECSTTSSHHHHHHHHHTSS
T ss_pred             EcCCCchHHHHHHHHHCCC
Confidence            5999999999999999964

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=94.22  E-value=0.016  Score=51.82  Aligned_cols=19  Identities=37%  Similarity=0.702  Sum_probs=17.6

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|-.
T Consensus        35 lGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           35 LGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             ECSTTSSHHHHHHHHHTSS
T ss_pred             ECCCCcHHHHHHHHHHcCC
Confidence            5999999999999999964

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=94.21  E-value=0.013  Score=52.21  Aligned_cols=18  Identities=33%  Similarity=0.578  Sum_probs=16.6

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|++|+|||||+++|+|.
T Consensus       129 ~GptGSGKTTlL~~l~g~  146 (356)
T 3jvv_A          129 TGPTGSGKSTTLAAMLDY  146 (356)
T ss_dssp             ECSTTSCHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHhc
Confidence            599999999999999985

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=94.21  E-value=0.062  Score=47.77  Aligned_cols=16  Identities=44%  Similarity=0.590  Sum_probs=15.0

Q ss_pred             CCCCCCCHHHHHHHHh
Q 024586            1 MGKGGVGKSSTVNSII   16 (265)
Q Consensus         1 vG~tg~GKSSliN~ll   16 (265)
                      +|++|+||||++++|.
T Consensus        29 ~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           29 EGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999999987

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=94.18  E-value=0.013  Score=52.02  Aligned_cols=19  Identities=26%  Similarity=0.569  Sum_probs=17.3

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||+|+|+|.-
T Consensus       181 vG~sGsGKSTll~~l~~~~  199 (361)
T 2gza_A          181 AGETGSGKTTLMKALMQEI  199 (361)
T ss_dssp             EESSSSCHHHHHHHHHTTS
T ss_pred             ECCCCCCHHHHHHHHHhcC
Confidence            5999999999999999964

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=94.16  E-value=0.16  Score=44.61  Aligned_cols=18  Identities=28%  Similarity=0.547  Sum_probs=16.1

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      .|++|+||||+++.+.+.
T Consensus        50 ~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           50 LGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999999864

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=94.16  E-value=0.013  Score=46.91  Aligned_cols=19  Identities=32%  Similarity=0.555  Sum_probs=17.0

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|.+|+||||+++.|.+.-
T Consensus        12 ~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A           12 SGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             ECSTTSCHHHHHHHHHHCT
T ss_pred             ECCCCCCHHHHHHHHHHhh
Confidence            5999999999999998754

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=94.14  E-value=0.017  Score=51.62  Aligned_cols=19  Identities=37%  Similarity=0.702  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|-.
T Consensus        43 lGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           43 LGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             ECCTTSSHHHHHHHHHTSS
T ss_pred             ECCCCChHHHHHHHHHcCC
Confidence            5999999999999999964

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=94.14  E-value=0.01  Score=48.89  Aligned_cols=19  Identities=26%  Similarity=0.555  Sum_probs=11.4

Q ss_pred             CCCCCCCHHHHHHHHh-CCC
Q 024586            1 MGKGGVGKSSTVNSII-GEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~ll-g~~   19 (265)
                      +|++|+||||+++.|. |..
T Consensus        33 ~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           33 SSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             ECSCC----CHHHHHHC---
T ss_pred             ECCCCCCHHHHHHHHHhcCC
Confidence            5999999999999999 753

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=94.12  E-value=0.014  Score=46.35  Aligned_cols=17  Identities=41%  Similarity=0.687  Sum_probs=15.8

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|.+|+||||+++.|.+
T Consensus         8 ~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            8 TGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHhc
Confidence            59999999999999986

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=94.01  E-value=0.015  Score=46.88  Aligned_cols=19  Identities=26%  Similarity=0.392  Sum_probs=17.0

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|.-
T Consensus         7 ~G~nG~GKTTll~~l~g~~   25 (189)
T 2i3b_A            7 TGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             ESCCSSCHHHHHHHHHHHH
T ss_pred             ECCCCChHHHHHHHHHhhc
Confidence            5999999999999999853

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=94.00  E-value=0.014  Score=51.35  Aligned_cols=19  Identities=32%  Similarity=0.454  Sum_probs=17.3

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||+|+|+|.-
T Consensus       177 ~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          177 CGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             EESTTSCHHHHHHHGGGGS
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999964

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=93.78  E-value=0.014  Score=51.67  Aligned_cols=19  Identities=32%  Similarity=0.501  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|-.
T Consensus        32 lGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           32 LGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             ECCCTHHHHHHHHHHHTSS
T ss_pred             ECCCCccHHHHHHHHHcCC
Confidence            5999999999999999964

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=93.78  E-value=0.022  Score=45.93  Aligned_cols=18  Identities=33%  Similarity=0.737  Sum_probs=16.1

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|.+||||||+++.|...
T Consensus        18 ~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           18 CGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             ECCTTSCHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            599999999999999764

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=93.73  E-value=0.015  Score=47.36  Aligned_cols=18  Identities=22%  Similarity=0.363  Sum_probs=16.5

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|++|+|||||++.|.|.
T Consensus        31 ~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           31 FGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             EESTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            589999999999999984

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=93.71  E-value=0.019  Score=44.72  Aligned_cols=18  Identities=28%  Similarity=0.438  Sum_probs=16.2

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|.+|+||||+.+.|.+.
T Consensus        10 ~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A           10 VGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             ECCTTSCHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999999874

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=93.69  E-value=0.019  Score=45.65  Aligned_cols=18  Identities=22%  Similarity=0.422  Sum_probs=16.4

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|.+|+|||||++.|++.
T Consensus        12 ~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A           12 AAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             ECCTTSCHHHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHHHh
Confidence            499999999999999975

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=93.66  E-value=0.019  Score=50.07  Aligned_cols=18  Identities=33%  Similarity=0.383  Sum_probs=16.6

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|++|+|||||++.|.|.
T Consensus        96 ~G~sGsGKSTL~~~L~gl  113 (312)
T 3aez_A           96 AGSVAVGKSTTARVLQAL  113 (312)
T ss_dssp             ECCTTSCHHHHHHHHHHH
T ss_pred             ECCCCchHHHHHHHHHhh
Confidence            599999999999999984

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=93.64  E-value=0.02  Score=46.13  Aligned_cols=18  Identities=33%  Similarity=0.650  Sum_probs=15.9

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|.+|+||||+++.|.+.
T Consensus        35 ~G~~GsGKSTl~~~L~~~   52 (200)
T 4eun_A           35 MGVSGSGKTTIAHGVADE   52 (200)
T ss_dssp             ECCTTSCHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            599999999999999763

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=93.64  E-value=0.023  Score=44.70  Aligned_cols=18  Identities=28%  Similarity=0.494  Sum_probs=16.5

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|++|+|||||++++.+.
T Consensus        44 ~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           44 VGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             CCSSSSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999999875

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=93.61  E-value=0.02  Score=51.48  Aligned_cols=19  Identities=26%  Similarity=0.536  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|-.
T Consensus        53 lGpsGsGKSTLLr~iaGl~   71 (390)
T 3gd7_A           53 LGRTGSGKSTLLSAFLRLL   71 (390)
T ss_dssp             EESTTSSHHHHHHHHHTCS
T ss_pred             ECCCCChHHHHHHHHhCCC
Confidence            5999999999999999964

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=93.61  E-value=0.019  Score=52.19  Aligned_cols=18  Identities=39%  Similarity=0.525  Sum_probs=16.7

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|++|+|||||+++|+|.
T Consensus       173 ~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          173 TGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             ECSTTSCHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHhh
Confidence            599999999999999985

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=93.60  E-value=0.2  Score=42.22  Aligned_cols=18  Identities=28%  Similarity=0.473  Sum_probs=15.9

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      .|++|+|||+++.++.+.
T Consensus        57 ~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           57 YGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             ESSSSSSHHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHHH
Confidence            399999999999999764

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=93.55  E-value=0.019  Score=51.23  Aligned_cols=18  Identities=44%  Similarity=0.645  Sum_probs=16.6

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|++|+|||||+++|+|.
T Consensus       142 vG~~GsGKTTll~~l~~~  159 (372)
T 2ewv_A          142 TGPTGSGKSTTIASMIDY  159 (372)
T ss_dssp             ECSSSSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHhh
Confidence            599999999999999984

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=93.53  E-value=0.027  Score=46.81  Aligned_cols=19  Identities=32%  Similarity=0.588  Sum_probs=17.3

Q ss_pred             CCCCCCCHHHHHHHHh---CCC
Q 024586            1 MGKGGVGKSSTVNSII---GEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~ll---g~~   19 (265)
                      +|.+|+||||+++.|.   |..
T Consensus        33 ~G~~GsGKSTl~k~La~~lg~~   54 (246)
T 2bbw_A           33 LGPPGSGKGTVCQRIAQNFGLQ   54 (246)
T ss_dssp             ECCTTSSHHHHHHHHHHHHCCC
T ss_pred             ECCCCCCHHHHHHHHHHHhCCe
Confidence            5999999999999999   864

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=93.45  E-value=0.0084  Score=47.62  Aligned_cols=18  Identities=17%  Similarity=0.434  Sum_probs=16.7

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|++|+|||||++.|++.
T Consensus         8 vG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            8 VGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             EESCHHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            589999999999999985

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=93.42  E-value=0.021  Score=53.28  Aligned_cols=19  Identities=32%  Similarity=0.471  Sum_probs=17.1

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||+|+|+|.-
T Consensus       266 ~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          266 VGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             EESTTSSHHHHHHHHGGGS
T ss_pred             ECCCCCCHHHHHHHHHhhC
Confidence            5999999999999999853

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=93.40  E-value=0.014  Score=51.85  Aligned_cols=19  Identities=32%  Similarity=0.599  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|-.
T Consensus        37 lGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           37 LGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             ECSCHHHHHHHHHHHHTSS
T ss_pred             ECCCCCcHHHHHHHHhCCC
Confidence            5999999999999999964

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=93.33  E-value=0.023  Score=45.66  Aligned_cols=18  Identities=28%  Similarity=0.344  Sum_probs=16.2

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|.+|+||||+.+.|.+.
T Consensus        31 ~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           31 TGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999999874

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=93.30  E-value=0.024  Score=46.09  Aligned_cols=18  Identities=33%  Similarity=0.582  Sum_probs=16.4

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|.+|||||||+|.|++.
T Consensus        44 vG~~gvGKTtl~~~l~~~   61 (226)
T 2hf9_A           44 MGAIGSGKTLLIEKLIDN   61 (226)
T ss_dssp             EESTTSSHHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHHH
Confidence            589999999999999965

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=93.28  E-value=0.026  Score=44.47  Aligned_cols=17  Identities=35%  Similarity=0.544  Sum_probs=15.3

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|++|+||||++.+|.+
T Consensus        32 ~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           32 VGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EECTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999999864

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.24  E-value=0.35  Score=44.07  Aligned_cols=18  Identities=22%  Similarity=0.434  Sum_probs=16.3

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      .|++|+|||+++.++.++
T Consensus       221 ~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          221 YGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             ESCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHHH
Confidence            399999999999999875

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=93.22  E-value=0.02  Score=50.81  Aligned_cols=19  Identities=32%  Similarity=0.373  Sum_probs=17.2

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|.-
T Consensus       176 vG~nGsGKSTLlk~L~gl~  194 (365)
T 1lw7_A          176 LGGESSGKSVLVNKLAAVF  194 (365)
T ss_dssp             ECCTTSHHHHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHHHh
Confidence            6999999999999999853

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=93.04  E-value=0.027  Score=46.89  Aligned_cols=18  Identities=28%  Similarity=0.370  Sum_probs=16.0

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|++|+||||+++.|.|.
T Consensus        31 ~G~~GsGKSTl~k~L~~~   48 (245)
T 2jeo_A           31 SGGTASGKSTVCEKIMEL   48 (245)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999999773

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=92.94  E-value=0.029  Score=43.82  Aligned_cols=17  Identities=35%  Similarity=0.597  Sum_probs=15.3

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|.+|+||||+.+.|.+
T Consensus        14 ~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A           14 MGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             ECSTTSCHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHH
Confidence            59999999999999865

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=92.93  E-value=0.035  Score=52.05  Aligned_cols=19  Identities=42%  Similarity=0.819  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|.-
T Consensus        31 iGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           31 LGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             ECCTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCcHHHHHHHHhcCC
Confidence            6999999999999999964

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=92.78  E-value=0.018  Score=47.92  Aligned_cols=19  Identities=32%  Similarity=0.536  Sum_probs=17.0

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||+++|.|..
T Consensus        33 ~GpnGsGKSTll~~i~g~~   51 (227)
T 1qhl_A           33 SGGNGAGKSTTMAAFVTAL   51 (227)
T ss_dssp             HSCCSHHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHhccc
Confidence            5999999999999999853

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=92.73  E-value=0.04  Score=51.70  Aligned_cols=19  Identities=37%  Similarity=0.690  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        53 vG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           53 VGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             ECCTTSSHHHHHHHHHTSS
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            6999999999999999964

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=92.55  E-value=0.043  Score=51.85  Aligned_cols=19  Identities=32%  Similarity=0.440  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|--
T Consensus       375 vG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          375 VGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            6999999999999999964

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=92.51  E-value=0.037  Score=45.10  Aligned_cols=18  Identities=22%  Similarity=0.433  Sum_probs=15.9

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|.+|+||||+.+.|.+.
T Consensus        11 ~G~~GsGKSTl~~~L~~~   28 (227)
T 1cke_A           11 DGPSGAGKGTLCKAMAEA   28 (227)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999999763

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.51  E-value=0.6  Score=42.43  Aligned_cols=18  Identities=22%  Similarity=0.470  Sum_probs=16.4

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      .|++|+|||+++.++.++
T Consensus       222 yGPPGTGKTlLAkAiA~e  239 (437)
T 4b4t_I          222 YGAPGTGKTLLAKAVANQ  239 (437)
T ss_dssp             ESSTTTTHHHHHHHHHHH
T ss_pred             ECCCCchHHHHHHHHHHH
Confidence            399999999999999875

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=92.48  E-value=0.044  Score=52.15  Aligned_cols=19  Identities=32%  Similarity=0.782  Sum_probs=17.6

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus       109 vGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          109 VGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             ECCTTSSHHHHHHHHHTSS
T ss_pred             ECCCCChHHHHHHHHhcCC
Confidence            6999999999999999964

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=92.45  E-value=0.66  Score=39.19  Aligned_cols=18  Identities=28%  Similarity=0.457  Sum_probs=16.1

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      .|++|+|||++++++.+.
T Consensus        60 ~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           60 FGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             ESSSSSCHHHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHHHH
Confidence            499999999999999874

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=92.38  E-value=0.33  Score=42.30  Aligned_cols=18  Identities=22%  Similarity=0.479  Sum_probs=16.1

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      .|++|+|||++++.+...
T Consensus        50 ~G~~G~GKT~l~~~~~~~   67 (387)
T 2v1u_A           50 YGLTGTGKTAVARLVLRR   67 (387)
T ss_dssp             CBCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999999864

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=92.38  E-value=0.047  Score=42.18  Aligned_cols=17  Identities=18%  Similarity=0.073  Sum_probs=15.1

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|.+||||||+.+.|..
T Consensus         7 ~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            7 EGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             ECSSSSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999864

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=92.36  E-value=0.051  Score=41.84  Aligned_cols=16  Identities=44%  Similarity=0.862  Sum_probs=14.6

Q ss_pred             CCCCCCCHHHHHHHHh
Q 024586            1 MGKGGVGKSSTVNSII   16 (265)
Q Consensus         1 vG~tg~GKSSliN~ll   16 (265)
                      +|++|+||||++.+|.
T Consensus        29 ~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           29 IGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999999975

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=92.36  E-value=0.049  Score=41.93  Aligned_cols=15  Identities=33%  Similarity=0.450  Sum_probs=14.1

Q ss_pred             CCCCCCCHHHHHHHH
Q 024586            1 MGKGGVGKSSTVNSI   15 (265)
Q Consensus         1 vG~tg~GKSSliN~l   15 (265)
                      +|.+||||||+.+.|
T Consensus         7 ~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            7 TGMPGSGKSEFAKLL   21 (179)
T ss_dssp             ECCTTSCHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHH
Confidence            499999999999999

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=92.35  E-value=0.05  Score=43.69  Aligned_cols=17  Identities=29%  Similarity=0.403  Sum_probs=15.8

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|.+|+||||+.+.|.+
T Consensus         8 ~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            8 TGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             ECSTTSCHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999999987

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=92.31  E-value=0.05  Score=42.47  Aligned_cols=18  Identities=28%  Similarity=0.357  Sum_probs=15.9

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|.+|+||||+.+.|...
T Consensus         9 ~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            9 NGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            499999999999999763

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=92.27  E-value=0.5  Score=38.93  Aligned_cols=18  Identities=28%  Similarity=0.529  Sum_probs=15.8

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      .|++|+|||+++.++.+.
T Consensus        45 ~G~~GtGKT~la~~la~~   62 (262)
T 2qz4_A           45 LGPPGCGKTLLAKAVATE   62 (262)
T ss_dssp             ESCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            399999999999999763

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=92.23  E-value=0.042  Score=51.97  Aligned_cols=19  Identities=32%  Similarity=0.441  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|--
T Consensus       375 vG~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          375 VGRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             EECTTSSHHHHHHHHTTTT
T ss_pred             ECCCCCCHHHHHHHHhhcc
Confidence            6999999999999999964

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=92.14  E-value=0.035  Score=48.07  Aligned_cols=18  Identities=33%  Similarity=0.383  Sum_probs=16.3

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|.+|+|||||++.|.|.
T Consensus        86 ~G~~GsGKSTl~~~L~~~  103 (308)
T 1sq5_A           86 AGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             EECTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999999884

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=92.12  E-value=0.026  Score=49.18  Aligned_cols=19  Identities=32%  Similarity=0.539  Sum_probs=16.9

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|.+|+||||++|.|+|..
T Consensus        10 ~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A           10 TGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EESSSSSCHHHHHHHHHSC
T ss_pred             EecCCCCHHHHHHHHHhhc
Confidence            4899999999999999753

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=92.10  E-value=0.042  Score=50.79  Aligned_cols=18  Identities=33%  Similarity=0.591  Sum_probs=16.4

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|++|+|||||++.|.|-
T Consensus        35 iG~nGsGKSTLl~~l~Gl   52 (483)
T 3euj_A           35 SGGNGAGKSTTMAGFVTA   52 (483)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHhcC
Confidence            599999999999999973

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=92.07  E-value=0.053  Score=51.61  Aligned_cols=19  Identities=32%  Similarity=0.678  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus       123 iG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          123 VGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             ECCTTSSHHHHHHHHTTSS
T ss_pred             ECCCCChHHHHHHHHhCCC
Confidence            6999999999999999964

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=91.95  E-value=0.06  Score=45.09  Aligned_cols=16  Identities=25%  Similarity=0.509  Sum_probs=15.2

Q ss_pred             CCCCCCCHHHHHHHHh
Q 024586            1 MGKGGVGKSSTVNSII   16 (265)
Q Consensus         1 vG~tg~GKSSliN~ll   16 (265)
                      +|.+|+||||+++.|.
T Consensus        33 ~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           33 DGPSGAGKGTLCKALA   48 (252)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999999999

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=91.85  E-value=0.036  Score=52.36  Aligned_cols=19  Identities=37%  Similarity=0.385  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|.-
T Consensus       373 vG~sGsGKSTll~~l~g~~  391 (578)
T 4a82_A          373 VGMSGGGKSTLINLIPRFY  391 (578)
T ss_dssp             ECSTTSSHHHHHTTTTTSS
T ss_pred             ECCCCChHHHHHHHHhcCC
Confidence            6999999999999999964

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=91.82  E-value=0.042  Score=52.18  Aligned_cols=19  Identities=32%  Similarity=0.487  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|--
T Consensus       387 vG~sGsGKSTll~~l~g~~  405 (598)
T 3qf4_B          387 VGPTGSGKTTIVNLLMRFY  405 (598)
T ss_dssp             ECCTTSSTTHHHHHHTTSS
T ss_pred             ECCCCCcHHHHHHHHhcCc
Confidence            6999999999999999964

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=91.80  E-value=0.041  Score=44.30  Aligned_cols=17  Identities=24%  Similarity=0.306  Sum_probs=15.4

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|.+|+||||+++.|.+
T Consensus        28 ~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           28 DGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             EECTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            48999999999999976

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=91.80  E-value=0.042  Score=45.28  Aligned_cols=18  Identities=28%  Similarity=0.322  Sum_probs=16.3

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|.+|+||||+++.|.+.
T Consensus        26 ~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           26 EGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             ECSTTSCHHHHHHTTGGG
T ss_pred             ECCCCCCHHHHHHHHHhc
Confidence            499999999999999875

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=91.77  E-value=0.056  Score=43.48  Aligned_cols=18  Identities=17%  Similarity=0.285  Sum_probs=16.5

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|.+|+||||+.+.|.+.
T Consensus        27 ~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           27 SGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             EESTTSSHHHHHHHHHTT
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            489999999999999986

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=91.75  E-value=0.05  Score=43.61  Aligned_cols=17  Identities=47%  Similarity=0.599  Sum_probs=15.2

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|.+|+||||+++.|.+
T Consensus        24 ~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           24 MGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             ECSTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999865

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=91.72  E-value=0.68  Score=40.95  Aligned_cols=18  Identities=28%  Similarity=0.446  Sum_probs=15.4

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|++|+|||||+..+...
T Consensus        67 ~GppGsGKSTLal~la~~   84 (356)
T 3hr8_A           67 FGQESSGKTTLALHAIAE   84 (356)
T ss_dssp             EESTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            489999999999888753

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=91.70  E-value=0.064  Score=41.69  Aligned_cols=17  Identities=35%  Similarity=0.519  Sum_probs=15.5

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      .|.+|+||||+.+.|..
T Consensus         8 ~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            8 IGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ecCCCCCHHHHHHHHHh
Confidence            49999999999999986

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=91.67  E-value=0.045  Score=51.81  Aligned_cols=19  Identities=37%  Similarity=0.459  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|.-
T Consensus       375 vG~sGsGKSTll~~l~g~~  393 (587)
T 3qf4_A          375 LGETGSGKSTLMNLIPRLI  393 (587)
T ss_dssp             ECSSSSSHHHHHHTTTTSS
T ss_pred             ECCCCCCHHHHHHHHhCCc
Confidence            6999999999999999964

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=91.56  E-value=0.054  Score=43.89  Aligned_cols=17  Identities=29%  Similarity=0.409  Sum_probs=15.5

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|++|+|||||++.|.+
T Consensus        29 ~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           29 TGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHH
Confidence            49999999999999985

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=91.50  E-value=0.067  Score=50.14  Aligned_cols=19  Identities=32%  Similarity=0.739  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus       300 ~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          300 LGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             ECCTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999964

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=91.40  E-value=0.058  Score=44.90  Aligned_cols=18  Identities=39%  Similarity=0.737  Sum_probs=16.5

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|++|+|||||+++|.+.
T Consensus        55 ~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           55 VGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999999875

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=91.39  E-value=0.057  Score=47.23  Aligned_cols=18  Identities=33%  Similarity=0.359  Sum_probs=15.7

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|.+|+||||+++.|.+.
T Consensus        98 ~GpsGSGKSTl~~~L~~l  115 (321)
T 3tqc_A           98 AGSVAVGKSTTSRVLKAL  115 (321)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999998763

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.38  E-value=0.7  Score=41.94  Aligned_cols=18  Identities=28%  Similarity=0.512  Sum_probs=16.2

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      .|++|+|||+++.++.++
T Consensus       212 ~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          212 YGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             ESCTTTTHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            399999999999999874

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=91.30  E-value=0.048  Score=50.14  Aligned_cols=19  Identities=21%  Similarity=0.326  Sum_probs=17.1

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus       144 vGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          144 VGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             EESTTSSHHHHHHHHHHTT
T ss_pred             ECCCCCCHHHHHHHHhCcc
Confidence            5999999999999999853

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=91.15  E-value=0.08  Score=42.41  Aligned_cols=17  Identities=24%  Similarity=0.323  Sum_probs=15.4

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|.+|+||||+...|.+
T Consensus        31 ~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           31 TGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHH
Confidence            59999999999999874

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=91.14  E-value=0.053  Score=43.41  Aligned_cols=17  Identities=29%  Similarity=0.386  Sum_probs=15.6

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|.+|+||||+.+.|.+
T Consensus         7 ~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            7 TGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EECTTSSHHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHHH
Confidence            48999999999999987

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=90.95  E-value=0.64  Score=41.18  Aligned_cols=42  Identities=12%  Similarity=0.131  Sum_probs=30.8

Q ss_pred             CccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           75 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        75 ~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      ..|++++|+++.+     .+..+...+.+..+.   +|+++|+||+|+.+
T Consensus        69 ~~~~il~VvD~~d-----~~~~~~~~l~~~~~~---~p~ilV~NK~DL~~  110 (368)
T 3h2y_A           69 SDALVVKIVDIFD-----FNGSWLPGLHRFVGN---NKVLLVGNKADLIP  110 (368)
T ss_dssp             SCCEEEEEEETTS-----HHHHCCTTHHHHSSS---SCEEEEEECGGGSC
T ss_pred             cCcEEEEEEECCC-----CcccHHHHHHHHhCC---CcEEEEEEChhcCC
Confidence            6789999976653     234555666666653   89999999999964

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=90.89  E-value=0.066  Score=45.56  Aligned_cols=18  Identities=28%  Similarity=0.492  Sum_probs=16.6

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|++|+|||||+++|.|.
T Consensus        50 ~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           50 AGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             ESSTTSCHHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHHH
Confidence            499999999999999885

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=90.82  E-value=2  Score=37.03  Aligned_cols=18  Identities=33%  Similarity=0.523  Sum_probs=16.1

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      .|++|+|||+++.++.++
T Consensus        51 ~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           51 FGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             ESSSSSCHHHHHHHHHHH
T ss_pred             ECCCCccHHHHHHHHHHH
Confidence            399999999999999874

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=90.70  E-value=0.42  Score=41.08  Aligned_cols=45  Identities=16%  Similarity=0.186  Sum_probs=29.7

Q ss_pred             CCccEEEEEEecCCcCCCHHH-HHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           74 KTIDVLLYVDRLDVYRVDNLD-KQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        74 ~~~d~iL~V~~~d~~r~~~~d-~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      .++|++++|+++....++... ..++..+...     ..|+++|+||+|+.
T Consensus        78 ~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~-----~~~~ilV~NK~DL~  123 (302)
T 2yv5_A           78 ANVDRVIIVETLKMPEFNNYLLDNMLVVYEYF-----KVEPVIVFNKIDLL  123 (302)
T ss_dssp             ESCCEEEEEECSTTTTCCHHHHHHHHHHHHHT-----TCEEEEEECCGGGC
T ss_pred             HhcCEEEEEEECCCCCCCHHHHHHHHHHHHhC-----CCCEEEEEEcccCC
Confidence            488999999777643333331 2344444331     27899999999995

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=90.44  E-value=1.3  Score=39.76  Aligned_cols=17  Identities=24%  Similarity=0.427  Sum_probs=15.9

Q ss_pred             CCCCCCHHHHHHHHhCC
Q 024586            2 GKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         2 G~tg~GKSSliN~llg~   18 (265)
                      |++|+|||+++.++.++
T Consensus       189 GPPGTGKTllAkAiA~e  205 (405)
T 4b4t_J          189 GPPGTGKTLLARAVAHH  205 (405)
T ss_dssp             SCSSSSHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHh
Confidence            99999999999999875

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=90.41  E-value=0.099  Score=48.97  Aligned_cols=19  Identities=32%  Similarity=0.684  Sum_probs=17.6

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus       318 ~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          318 VGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             ECCTTSSHHHHHHHHHTSS
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            5999999999999999975

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=90.38  E-value=0.099  Score=49.73  Aligned_cols=19  Identities=32%  Similarity=0.684  Sum_probs=17.6

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus       388 ~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          388 VGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             ECCTTSSHHHHHHHHHTSS
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5999999999999999964

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=90.33  E-value=0.1  Score=41.39  Aligned_cols=17  Identities=35%  Similarity=0.483  Sum_probs=15.4

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|.+||||||+++.|..
T Consensus         6 ~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            6 FGTVGAGKSTISAEISK   22 (205)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             ECCCccCHHHHHHHHHH
Confidence            49999999999999876

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=90.32  E-value=0.083  Score=45.44  Aligned_cols=18  Identities=39%  Similarity=0.398  Sum_probs=16.0

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|.+|+|||||++.|.+.
T Consensus        37 ~G~sGsGKSTla~~L~~~   54 (290)
T 1odf_A           37 SGPQGSGKSFTSIQIYNH   54 (290)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999998874

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=90.32  E-value=0.083  Score=42.51  Aligned_cols=17  Identities=18%  Similarity=0.014  Sum_probs=15.8

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|++|+|||||++.|.+
T Consensus        26 ~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           26 YGPYASGKTTLALQTGL   42 (220)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999987

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=90.31  E-value=0.12  Score=40.53  Aligned_cols=17  Identities=24%  Similarity=0.458  Sum_probs=15.0

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      .|.+||||||+++.|..
T Consensus         9 ~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            9 TGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999864

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=90.26  E-value=0.1  Score=40.89  Aligned_cols=17  Identities=29%  Similarity=0.440  Sum_probs=15.1

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|.+|+||||+.+.|..
T Consensus        11 ~G~~GsGKst~a~~La~   27 (185)
T 3trf_A           11 IGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999999853

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=90.22  E-value=0.071  Score=47.13  Aligned_cols=19  Identities=32%  Similarity=0.466  Sum_probs=17.3

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus        77 iG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           77 FAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             EECTTSSHHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            5899999999999999964

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=90.22  E-value=0.086  Score=44.59  Aligned_cols=18  Identities=39%  Similarity=0.737  Sum_probs=16.5

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|++|+|||||+++|.+.
T Consensus        79 ~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           79 VGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCcChHHHHHHHHHHH
Confidence            599999999999999985

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=90.10  E-value=0.11  Score=49.53  Aligned_cols=20  Identities=30%  Similarity=0.642  Sum_probs=18.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCc
Q 024586            1 MGKGGVGKSSTVNSIIGEKA   20 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~   20 (265)
                      +|++|+|||||++.|.|-..
T Consensus       384 iG~NGsGKSTLlk~l~Gl~~  403 (608)
T 3j16_B          384 MGENGTGKTTLIKLLAGALK  403 (608)
T ss_dssp             ESCTTSSHHHHHHHHHTSSC
T ss_pred             ECCCCCcHHHHHHHHhcCCC
Confidence            59999999999999999753

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=90.08  E-value=2.2  Score=36.38  Aligned_cols=17  Identities=18%  Similarity=0.419  Sum_probs=14.9

Q ss_pred             CCCCCCHHHHHHHHhCC
Q 024586            2 GKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         2 G~tg~GKSSliN~llg~   18 (265)
                      |++|+|||+++.++...
T Consensus        55 G~~G~GKT~la~~la~~   71 (324)
T 3u61_B           55 PSPGTGKTTVAKALCHD   71 (324)
T ss_dssp             SSTTSSHHHHHHHHHHH
T ss_pred             CcCCCCHHHHHHHHHHH
Confidence            77999999999999653

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=90.07  E-value=0.11  Score=40.70  Aligned_cols=17  Identities=24%  Similarity=0.538  Sum_probs=15.1

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|.+||||||+.+.|..
T Consensus        10 ~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A           10 LGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999863

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=90.04  E-value=0.087  Score=46.02  Aligned_cols=18  Identities=33%  Similarity=0.562  Sum_probs=16.5

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|++|+|||||++.|.+.
T Consensus        57 ~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           57 AGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             ESSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHHH
Confidence            499999999999999885

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=90.01  E-value=0.074  Score=45.38  Aligned_cols=18  Identities=28%  Similarity=0.318  Sum_probs=15.9

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|++|+|||||++.|.+.
T Consensus        41 ~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           41 TSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             EESTTSSHHHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHHHH
Confidence            589999999999998864

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=89.99  E-value=0.12  Score=41.88  Aligned_cols=16  Identities=44%  Similarity=0.862  Sum_probs=14.4

Q ss_pred             CCCCCCCHHHHHHHHh
Q 024586            1 MGKGGVGKSSTVNSII   16 (265)
Q Consensus         1 vG~tg~GKSSliN~ll   16 (265)
                      +|++|+||||++.+|.
T Consensus        29 ~G~NgsGKStil~ai~   44 (203)
T 3qks_A           29 IGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHH
Confidence            5999999999999875

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.96  E-value=1.9  Score=39.51  Aligned_cols=18  Identities=22%  Similarity=0.447  Sum_probs=16.3

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      .|++|+|||+++.++.++
T Consensus       249 yGPPGTGKTlLAkAiA~e  266 (467)
T 4b4t_H          249 YGPPGTGKTLCARAVANR  266 (467)
T ss_dssp             CSCTTSSHHHHHHHHHHH
T ss_pred             eCCCCCcHHHHHHHHHhc
Confidence            499999999999999875

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=89.94  E-value=0.12  Score=40.81  Aligned_cols=18  Identities=17%  Similarity=0.344  Sum_probs=16.0

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|.+|+||||+++.|+..
T Consensus        10 ~G~sGsGKTTl~~~L~~~   27 (169)
T 1xjc_A           10 VGYKHSGKTTLMEKWVAA   27 (169)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            489999999999999874

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=89.93  E-value=0.095  Score=41.12  Aligned_cols=17  Identities=35%  Similarity=0.542  Sum_probs=15.2

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      .|.+|+||||+++.|..
T Consensus         7 ~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            7 TGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EECTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            48999999999999865

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=89.76  E-value=0.12  Score=43.25  Aligned_cols=17  Identities=24%  Similarity=0.249  Sum_probs=15.3

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|.+|+||||+.+.|.+
T Consensus         7 ~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            7 YGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHHh
Confidence            59999999999999864

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=89.75  E-value=0.099  Score=41.16  Aligned_cols=17  Identities=18%  Similarity=0.368  Sum_probs=14.9

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|.+|+||||+.+.|..
T Consensus        11 ~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A           11 TGHPATGKTTLSQALAT   27 (193)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            48999999999999864

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=89.73  E-value=0.12  Score=40.34  Aligned_cols=17  Identities=24%  Similarity=0.413  Sum_probs=15.4

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|.+|+||||+.+.|.+
T Consensus        11 ~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A           11 TGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999876

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=89.66  E-value=0.1  Score=42.66  Aligned_cols=18  Identities=17%  Similarity=0.287  Sum_probs=16.4

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|++|+|||||+..|.+.
T Consensus        30 ~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           30 FGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHHH
Confidence            599999999999999984

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=89.61  E-value=0.084  Score=48.18  Aligned_cols=19  Identities=26%  Similarity=0.352  Sum_probs=17.3

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|.+|+|||||++.|.|..
T Consensus       163 vG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          163 FAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             EECTTSSHHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHhccc
Confidence            5999999999999999964

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=89.19  E-value=0.12  Score=44.33  Aligned_cols=17  Identities=35%  Similarity=0.491  Sum_probs=15.3

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      .|.+||||||+++.|..
T Consensus        39 ~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           39 GGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             ECCTTSCTHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999964

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=89.18  E-value=0.14  Score=40.00  Aligned_cols=16  Identities=31%  Similarity=0.536  Sum_probs=14.7

Q ss_pred             CCCCCCCHHHHHHHHh
Q 024586            1 MGKGGVGKSSTVNSII   16 (265)
Q Consensus         1 vG~tg~GKSSliN~ll   16 (265)
                      +|.+|+||||+.+.|.
T Consensus        17 ~G~~GsGKst~~~~l~   32 (180)
T 3iij_A           17 TGTPGVGKTTLGKELA   32 (180)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHH
Confidence            4999999999999987

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=89.12  E-value=0.14  Score=40.35  Aligned_cols=18  Identities=39%  Similarity=0.573  Sum_probs=15.7

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|.+|+||||+.+.|...
T Consensus        16 ~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           16 TGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            599999999999998654

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=89.08  E-value=0.17  Score=39.05  Aligned_cols=18  Identities=33%  Similarity=0.678  Sum_probs=16.0

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      .|++|+|||++++.+...
T Consensus        49 ~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           49 IGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             ECCTTSCHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999998864

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=89.07  E-value=1.1  Score=39.63  Aligned_cols=18  Identities=28%  Similarity=0.508  Sum_probs=15.7

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      .|++|+|||+++.+|...
T Consensus       154 ~GppGtGKT~la~aia~~  171 (389)
T 3vfd_A          154 FGPPGNGKTMLAKAVAAE  171 (389)
T ss_dssp             ESSTTSCHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            499999999999999654

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.06  E-value=0.69  Score=42.06  Aligned_cols=17  Identities=24%  Similarity=0.407  Sum_probs=16.0

Q ss_pred             CCCCCCHHHHHHHHhCC
Q 024586            2 GKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         2 G~tg~GKSSliN~llg~   18 (265)
                      |++|+|||+++.++.++
T Consensus       222 GPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          222 GPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             SCTTSSHHHHHHHHHHH
T ss_pred             CcCCCCHHHHHHHHHHH
Confidence            99999999999999875

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=89.01  E-value=0.15  Score=39.69  Aligned_cols=17  Identities=29%  Similarity=0.442  Sum_probs=15.1

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|.+|+||||+...|..
T Consensus        10 ~G~~GsGKsTla~~La~   26 (175)
T 1via_A           10 IGFMGSGKSTLARALAK   26 (175)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHH
Confidence            49999999999999864

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=88.95  E-value=0.11  Score=51.97  Aligned_cols=19  Identities=42%  Similarity=0.772  Sum_probs=17.7

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus       705 iGpNGSGKSTLLklLaGll  723 (986)
T 2iw3_A          705 IGPNGAGKSTLINVLTGEL  723 (986)
T ss_dssp             CSCCCHHHHHHHHHHTTSS
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            6999999999999999974

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=88.92  E-value=0.15  Score=40.06  Aligned_cols=18  Identities=22%  Similarity=0.368  Sum_probs=15.7

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|.+|+||||+++.|.+.
T Consensus        19 ~G~~GsGKsT~~~~L~~~   36 (186)
T 2yvu_A           19 TGLPGSGKTTIATRLADL   36 (186)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHHH
Confidence            499999999999998764

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=88.87  E-value=0.52  Score=41.78  Aligned_cols=42  Identities=10%  Similarity=0.114  Sum_probs=28.8

Q ss_pred             CccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           75 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        75 ~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      +.+++++|+++.+.  .   ..+...+.+.++.   +|+++|+||+|+.+
T Consensus        71 ~~~lil~VvD~~d~--~---~s~~~~l~~~l~~---~piilV~NK~DLl~  112 (369)
T 3ec1_A           71 SKALVVNIVDIFDF--N---GSFIPGLPRFAAD---NPILLVGNKADLLP  112 (369)
T ss_dssp             HCCEEEEEEETTCS--G---GGCCSSHHHHCTT---SCEEEEEECGGGSC
T ss_pred             cCcEEEEEEECCCC--C---CchhhHHHHHhCC---CCEEEEEEChhcCC
Confidence            56899999766542  2   1234444555543   89999999999974

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=88.82  E-value=0.084  Score=54.74  Aligned_cols=18  Identities=33%  Similarity=0.451  Sum_probs=16.8

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      ||+||+|||||++.|++-
T Consensus      1111 VG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A         1111 VGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp             ECSTTSSTTSHHHHHTTS
T ss_pred             ECCCCChHHHHHHHHhcC
Confidence            699999999999999984

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=88.68  E-value=0.13  Score=53.06  Aligned_cols=19  Identities=37%  Similarity=0.504  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|+|.-
T Consensus       422 vG~sGsGKSTl~~ll~g~~  440 (1284)
T 3g5u_A          422 VGNSGCGKSTTVQLMQRLY  440 (1284)
T ss_dssp             ECCSSSSHHHHHHHTTTSS
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            6999999999999999863

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=88.65  E-value=0.13  Score=53.42  Aligned_cols=19  Identities=26%  Similarity=0.525  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      ||++|+|||||++.|+|.-
T Consensus       450 vG~sGsGKSTll~ll~~~~  468 (1321)
T 4f4c_A          450 VGSSGCGKSTIISLLLRYY  468 (1321)
T ss_dssp             EECSSSCHHHHHHHHTTSS
T ss_pred             EecCCCcHHHHHHHhcccc
Confidence            6999999999999999963

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=88.59  E-value=0.16  Score=40.88  Aligned_cols=16  Identities=44%  Similarity=0.725  Sum_probs=14.5

Q ss_pred             CCCCCCCHHHHHHHHh
Q 024586            1 MGKGGVGKSSTVNSII   16 (265)
Q Consensus         1 vG~tg~GKSSliN~ll   16 (265)
                      +|.+||||||+.+.|.
T Consensus         6 ~G~~GsGKsT~a~~L~   21 (216)
T 3fb4_A            6 MGLPGAGKGTQAEQII   21 (216)
T ss_dssp             ECSTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            4999999999999985

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=88.30  E-value=0.18  Score=38.92  Aligned_cols=17  Identities=18%  Similarity=0.390  Sum_probs=14.8

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      .|.+|+||||+.+.|..
T Consensus         8 ~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            8 VGARGCGMTTVGRELAR   24 (173)
T ss_dssp             ESCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999998854

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=88.22  E-value=0.18  Score=40.02  Aligned_cols=18  Identities=22%  Similarity=0.333  Sum_probs=15.8

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      .|.+|+||||+++.|...
T Consensus        10 ~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A           10 EGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             ECCTTSSHHHHHHHHHHT
T ss_pred             EcCCCCCHHHHHHHHHHH
Confidence            499999999999998764

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=88.14  E-value=0.14  Score=45.68  Aligned_cols=18  Identities=17%  Similarity=0.254  Sum_probs=16.2

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|++|+|||||++.|.+.
T Consensus       175 ~G~~GsGKSTl~~~l~~~  192 (377)
T 1svm_A          175 KGPIDSGKTTLAAALLEL  192 (377)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHhh
Confidence            499999999999999873

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=88.13  E-value=0.15  Score=42.91  Aligned_cols=17  Identities=24%  Similarity=0.356  Sum_probs=15.4

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|.+|+||||+.+.|.+
T Consensus        54 ~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           54 VGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             ECSTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999999965

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=88.07  E-value=1.2  Score=37.80  Aligned_cols=61  Identities=20%  Similarity=0.206  Sum_probs=31.7

Q ss_pred             EeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           48 VDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        48 iDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      -+.||...      ++.+.+.+.+  ..+|++++|++..... +.....    +.+..+.   +|.++|+||+|+.+
T Consensus         4 ~w~PGhm~------ka~~~~~~~l--~~aDvVl~VvDAr~p~-~~~~~~----l~~~l~~---kp~ilVlNK~DL~~   64 (282)
T 1puj_A            4 QWFPGHMA------KARREVTEKL--KLIDIVYELVDARIPM-SSRNPM----IEDILKN---KPRIMLLNKADKAD   64 (282)
T ss_dssp             -----CTT------HHHHHHHHHG--GGCSEEEEEEETTSTT-TTSCHH----HHHHCSS---SCEEEEEECGGGSC
T ss_pred             cCCchHHH------HHHHHHHHHH--hhCCEEEEEEeCCCCC-ccCCHH----HHHHHCC---CCEEEEEECcccCC
Confidence            34576521      3334444333  3789999996654322 211111    2222332   89999999999964

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=88.05  E-value=0.19  Score=39.39  Aligned_cols=17  Identities=29%  Similarity=0.606  Sum_probs=14.7

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|.+||||||+.+.|..
T Consensus         9 ~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            9 LGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999998853

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=88.04  E-value=0.22  Score=39.68  Aligned_cols=17  Identities=35%  Similarity=0.427  Sum_probs=15.2

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      .|.+||||||+++.|..
T Consensus        10 ~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A           10 EGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHH
Confidence            49999999999999865

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=87.99  E-value=0.19  Score=44.00  Aligned_cols=16  Identities=44%  Similarity=0.862  Sum_probs=14.6

Q ss_pred             CCCCCCCHHHHHHHHh
Q 024586            1 MGKGGVGKSSTVNSII   16 (265)
Q Consensus         1 vG~tg~GKSSliN~ll   16 (265)
                      +|++|+||||++.+|.
T Consensus        29 ~G~NGsGKS~lleAi~   44 (339)
T 3qkt_A           29 IGQNGSGKSSLLDAIL   44 (339)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999999974

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=87.87  E-value=0.19  Score=40.48  Aligned_cols=17  Identities=35%  Similarity=0.575  Sum_probs=15.0

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|.+||||||+.+.|..
T Consensus         6 ~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            6 MGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999853

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=87.85  E-value=0.17  Score=50.72  Aligned_cols=19  Identities=32%  Similarity=0.555  Sum_probs=17.0

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|..
T Consensus       467 iGpNGsGKSTLLk~LagG~  485 (986)
T 2iw3_A          467 CGPNGCGKSTLMRAIANGQ  485 (986)
T ss_dssp             ECSTTSSHHHHHHHHHHTC
T ss_pred             ECCCCCCHHHHHHHHhCCC
Confidence            6999999999999999654

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=87.81  E-value=1.3  Score=36.45  Aligned_cols=56  Identities=13%  Similarity=0.075  Sum_probs=32.9

Q ss_pred             CccEEEEEEecCCc-CCCHHHHHHHHHHHHhcCcC---cCCcEEEEEeCc-cCCCCCCCCHHHHH
Q 024586           75 TIDVLLYVDRLDVY-RVDNLDKQITRAITDNFGEQ---IWKRALIVLTHA-QLSLPDRLDYEVFC  134 (265)
Q Consensus        75 ~~d~iL~V~~~d~~-r~~~~d~~~l~~l~~~~g~~---~~~~~ivV~tk~-D~~~~~~~~~~~~~  134 (265)
                      +.|+++||++..+. ++.  -+..+..|.++..++   ...|++|..||. |+  +...+..+..
T Consensus       125 ~TdglIfVVDSsD~~R~e--ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDl--p~Ams~~EI~  185 (227)
T 3l82_B          125 VVDGFIYVANAEAHKRHE--WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGD--VKRMPCFYLA  185 (227)
T ss_dssp             HCSEEEEEEECBTTCCCC--HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTT--SCBCCHHHHH
T ss_pred             CCCEEEEEeccccHhHHH--HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCc--cCCCCHHHHH
Confidence            67999999765443 343  333444445544332   235888888996 56  4555555443

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=87.80  E-value=1.1  Score=38.62  Aligned_cols=47  Identities=13%  Similarity=-0.006  Sum_probs=29.2

Q ss_pred             CCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           74 KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        74 ~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      ..+|.+++|.++....++..  .+-+.+......  .++.++|+||+|+.+
T Consensus        85 anvD~v~~V~~~~~p~~~~~--~i~r~L~~~~~~--~~~~vivlnK~DL~~  131 (307)
T 1t9h_A           85 CNVDQAVLVFSAVQPSFSTA--LLDRFLVLVEAN--DIQPIICITKMDLIE  131 (307)
T ss_dssp             ECCCEEEEEEESTTTTCCHH--HHHHHHHHHHTT--TCEEEEEEECGGGCC
T ss_pred             HhCCEEEEEEeCCCCCCCHH--HHHHHHHHHHHC--CCCEEEEEECCccCc
Confidence            47899999976654334443  233333222111  278899999999964

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=87.79  E-value=0.2  Score=40.52  Aligned_cols=17  Identities=35%  Similarity=0.487  Sum_probs=15.2

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      .|.+||||||+.+.|..
T Consensus        10 ~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A           10 TGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999865

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=87.76  E-value=0.23  Score=38.96  Aligned_cols=17  Identities=24%  Similarity=0.458  Sum_probs=15.1

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      .|.+||||||+.+.|..
T Consensus         6 ~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            6 EGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             ECSTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999865

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=87.75  E-value=0.16  Score=42.17  Aligned_cols=18  Identities=39%  Similarity=0.665  Sum_probs=16.1

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|++|+|||+++.+|.+.
T Consensus        51 ~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           51 VGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             ECCTTSCHHHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHHHH
Confidence            499999999999999864

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=87.47  E-value=0.13  Score=49.48  Aligned_cols=16  Identities=44%  Similarity=0.746  Sum_probs=14.4

Q ss_pred             CCCCCCCHHHHHHHHh
Q 024586            1 MGKGGVGKSSTVNSII   16 (265)
Q Consensus         1 vG~tg~GKSSliN~ll   16 (265)
                      +|++|+|||||+|.|+
T Consensus       354 iGpnGsGKSTLl~~i~  369 (670)
T 3ux8_A          354 TGVSGSGKSTLVNEVL  369 (670)
T ss_dssp             ECSTTSSHHHHHTTTH
T ss_pred             EeeCCCCHHHHHHHHH
Confidence            6999999999998765

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=87.45  E-value=0.075  Score=42.70  Aligned_cols=18  Identities=33%  Similarity=0.584  Sum_probs=15.5

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|.+|+||||+++.|...
T Consensus         6 ~G~~GsGKsTl~~~L~~~   23 (214)
T 1gtv_A            6 EGVDGAGKRTLVEKLSGA   23 (214)
T ss_dssp             EEEEEEEHHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHHH
Confidence            488999999999998753

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=87.42  E-value=0.22  Score=39.03  Aligned_cols=17  Identities=29%  Similarity=0.407  Sum_probs=14.8

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|.+|+||||+...|..
T Consensus         8 ~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            8 VGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999998853

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=87.37  E-value=0.18  Score=39.97  Aligned_cols=18  Identities=28%  Similarity=0.291  Sum_probs=16.0

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|.+|+||||+.+.|...
T Consensus        14 ~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A           14 TGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             EECTTSCHHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHHC
Confidence            489999999999999865

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=87.34  E-value=0.18  Score=39.68  Aligned_cols=17  Identities=29%  Similarity=0.587  Sum_probs=14.8

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|.+|+||||+.+.|..
T Consensus        15 ~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A           15 VGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             EECTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            48999999999998863

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=87.30  E-value=0.26  Score=37.86  Aligned_cols=17  Identities=24%  Similarity=0.165  Sum_probs=14.9

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      .|.+|+||||+.+.|..
T Consensus         6 ~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            6 IGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             ESCTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            48999999999999854

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=87.25  E-value=0.14  Score=44.38  Aligned_cols=16  Identities=38%  Similarity=0.713  Sum_probs=15.1

Q ss_pred             CCCCCCCHHHHHHHHh
Q 024586            1 MGKGGVGKSSTVNSII   16 (265)
Q Consensus         1 vG~tg~GKSSliN~ll   16 (265)
                      +|++|+||||++.+|.
T Consensus        30 ~G~NGsGKS~ll~ai~   45 (322)
T 1e69_A           30 VGPNGSGKSNIIDAIK   45 (322)
T ss_dssp             ECCTTTCSTHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHH
Confidence            5999999999999997

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=86.95  E-value=0.23  Score=44.17  Aligned_cols=18  Identities=33%  Similarity=0.453  Sum_probs=16.2

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|.+|+|||++++.|+..
T Consensus        41 ~G~~G~GKs~~~~~~~~~   58 (392)
T 4ag6_A           41 LAKPGAGKSFTAKMLLLR   58 (392)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHHH
Confidence            599999999999999864

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=86.89  E-value=0.052  Score=48.67  Aligned_cols=17  Identities=35%  Similarity=0.452  Sum_probs=14.7

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|++|+|||||+++|.+
T Consensus        66 vG~NGaGKStLl~aI~~   82 (415)
T 4aby_A           66 TGETGAGKSIIVDALGL   82 (415)
T ss_dssp             EESHHHHHHHHTHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999988843

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=86.86  E-value=0.23  Score=39.72  Aligned_cols=17  Identities=24%  Similarity=0.333  Sum_probs=15.0

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      .|.+|+||||+++.|..
T Consensus        16 ~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A           16 EGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHH
Confidence            48999999999999864

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=86.83  E-value=0.19  Score=45.44  Aligned_cols=17  Identities=35%  Similarity=0.563  Sum_probs=15.7

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|++|+||||++++|.+
T Consensus        32 ~G~nG~GKstll~ai~~   48 (430)
T 1w1w_A           32 IGPNGSGKSNMMDAISF   48 (430)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHh
Confidence            59999999999999985

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=86.75  E-value=0.21  Score=39.47  Aligned_cols=17  Identities=24%  Similarity=0.585  Sum_probs=14.9

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|.+|+||||+.+.|..
T Consensus        18 ~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           18 IGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             EECTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            48999999999999864

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=86.65  E-value=0.29  Score=38.85  Aligned_cols=18  Identities=39%  Similarity=0.521  Sum_probs=15.9

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      .|++|+|||+++.++.+.
T Consensus        60 ~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           60 HGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999998864

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=86.64  E-value=0.17  Score=42.82  Aligned_cols=17  Identities=29%  Similarity=0.468  Sum_probs=15.4

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|++|+|||||+..|.+
T Consensus        36 ~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           36 VSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHH
Confidence            48999999999999886

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=86.62  E-value=0.25  Score=39.81  Aligned_cols=18  Identities=22%  Similarity=0.270  Sum_probs=15.7

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|.+|+||||+++.|.+.
T Consensus        31 ~G~~GsGKsT~~~~l~~~   48 (211)
T 1m7g_A           31 TGLSASGKSTLAVELEHQ   48 (211)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999998763

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=86.61  E-value=0.26  Score=39.22  Aligned_cols=17  Identities=24%  Similarity=0.606  Sum_probs=15.0

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      .|.+|+||||+.+.|..
T Consensus        21 ~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           21 LGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999998874

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=86.60  E-value=0.26  Score=39.27  Aligned_cols=17  Identities=24%  Similarity=0.487  Sum_probs=14.9

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|.+|+||||+.+.|..
T Consensus        26 ~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           26 LGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999998854

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=86.47  E-value=0.21  Score=39.02  Aligned_cols=17  Identities=29%  Similarity=0.603  Sum_probs=14.8

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      .|.+|+||||+.+.|..
T Consensus        12 ~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A           12 LGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            48999999999998853

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=86.45  E-value=0.26  Score=41.31  Aligned_cols=17  Identities=35%  Similarity=0.495  Sum_probs=15.1

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|.+||||||+.+.|..
T Consensus        10 ~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A           10 TGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHH
Confidence            49999999999999864

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=86.45  E-value=0.22  Score=40.65  Aligned_cols=17  Identities=35%  Similarity=0.554  Sum_probs=15.0

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|.+||||||+.+.|..
T Consensus        13 ~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A           13 MGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             EECTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            48999999999999863

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=86.41  E-value=0.21  Score=39.89  Aligned_cols=17  Identities=24%  Similarity=0.395  Sum_probs=15.1

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      .|.+||||||+++.|..
T Consensus        15 ~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A           15 EGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            48999999999999874

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=86.31  E-value=0.22  Score=44.22  Aligned_cols=17  Identities=24%  Similarity=0.462  Sum_probs=15.7

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|++|+||||++++|.+
T Consensus        32 ~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A           32 YGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCChhHHHHHHHH
Confidence            59999999999999985

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=86.30  E-value=0.26  Score=40.13  Aligned_cols=19  Identities=37%  Similarity=0.581  Sum_probs=16.7

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|+||+|||+|...|...-
T Consensus        40 ~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           40 TGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             ECCCTTTTHHHHHHHHTTT
T ss_pred             ECCCCCCHHHHHHHHHHhC
Confidence            4999999999999998653

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=86.22  E-value=0.22  Score=40.38  Aligned_cols=17  Identities=24%  Similarity=0.276  Sum_probs=15.0

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|.+|+||||+++.|..
T Consensus        11 ~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A           11 SGAPASGKGTQCELIKT   27 (222)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            48999999999999864

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=86.19  E-value=0.17  Score=39.42  Aligned_cols=17  Identities=35%  Similarity=0.487  Sum_probs=10.9

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      .|.+||||||+.+.|..
T Consensus        11 ~G~~GsGKST~a~~La~   27 (183)
T 2vli_A           11 NGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             ECCC----CHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999863

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=86.16  E-value=0.27  Score=45.76  Aligned_cols=17  Identities=41%  Similarity=0.534  Sum_probs=15.5

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      .|.||+|||+++|+|+.
T Consensus       173 aG~TGSGKSt~L~~li~  189 (512)
T 2ius_A          173 AGTTGSGASVGVNAMIL  189 (512)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999875

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=86.10  E-value=0.28  Score=39.69  Aligned_cols=17  Identities=24%  Similarity=0.501  Sum_probs=15.0

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|.+|+||||+.+.|..
T Consensus        10 ~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A           10 IGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999998864

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=86.05  E-value=0.28  Score=40.75  Aligned_cols=17  Identities=35%  Similarity=0.491  Sum_probs=15.1

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|.+|+||||+.+.|..
T Consensus        15 ~G~~GsGKsTla~~la~   31 (233)
T 3r20_A           15 DGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999873

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=86.01  E-value=5.5  Score=39.71  Aligned_cols=15  Identities=27%  Similarity=0.304  Sum_probs=14.2

Q ss_pred             CCCCCCCHHHHHHHH
Q 024586            1 MGKGGVGKSSTVNSI   15 (265)
Q Consensus         1 vG~tg~GKSSliN~l   15 (265)
                      +|++|+||||+++.+
T Consensus       668 tGpNGsGKSTlLr~i  682 (934)
T 3thx_A          668 TGPNMGGKSTYIRQT  682 (934)
T ss_dssp             ECCTTSSHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHH
Confidence            599999999999998

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=85.98  E-value=0.28  Score=39.32  Aligned_cols=17  Identities=35%  Similarity=0.491  Sum_probs=15.0

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|.+||||||+.+.|..
T Consensus        18 tG~~GSGKSTva~~L~~   34 (192)
T 2grj_A           18 TGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            48999999999998864

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=85.95  E-value=0.29  Score=37.68  Aligned_cols=17  Identities=35%  Similarity=0.309  Sum_probs=14.7

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      .|.+||||||+.+.|..
T Consensus        13 ~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A           13 IGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             ESCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            48999999999998853

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=85.87  E-value=0.34  Score=39.14  Aligned_cols=18  Identities=11%  Similarity=0.248  Sum_probs=15.9

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      .|++|+|||+++..+...
T Consensus        58 ~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           58 WGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999998764

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=85.81  E-value=0.17  Score=42.26  Aligned_cols=18  Identities=28%  Similarity=0.351  Sum_probs=15.7

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|.+|+||||+.+.|...
T Consensus        38 ~G~~GsGKSTla~~L~~~   55 (253)
T 2p5t_B           38 GGQSGAGKTTIHRIKQKE   55 (253)
T ss_dssp             ESCGGGTTHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            499999999999998753

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=85.70  E-value=0.3  Score=39.83  Aligned_cols=17  Identities=29%  Similarity=0.487  Sum_probs=14.9

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|.+||||||+++.|..
T Consensus         6 ~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            6 FGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999998853

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=85.66  E-value=0.2  Score=43.55  Aligned_cols=17  Identities=24%  Similarity=0.544  Sum_probs=15.6

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      .|++|+||||+++.|.+
T Consensus        42 ~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           42 YGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             ECSTTSSHHHHHHTHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999887

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=85.64  E-value=0.25  Score=38.09  Aligned_cols=18  Identities=33%  Similarity=0.621  Sum_probs=15.7

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      .|++|+|||+++..+...
T Consensus        49 ~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           49 LGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             ESCGGGCHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999988764

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=85.60  E-value=0.23  Score=43.26  Aligned_cols=19  Identities=37%  Similarity=0.590  Sum_probs=16.8

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|.||+||||+.+.|++..
T Consensus       150 ~G~sG~GKSt~a~~l~~~g  168 (314)
T 1ko7_A          150 TGDSGIGKSETALELIKRG  168 (314)
T ss_dssp             EESTTSSHHHHHHHHHHTT
T ss_pred             EeCCCCCHHHHHHHHHhcC
Confidence            4899999999999999753

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=85.55  E-value=0.28  Score=50.69  Aligned_cols=19  Identities=32%  Similarity=0.420  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|+|-.
T Consensus      1065 vG~sGsGKSTl~~~l~g~~ 1083 (1284)
T 3g5u_A         1065 VGSSGCGKSTVVQLLERFY 1083 (1284)
T ss_dssp             ECSSSTTHHHHHHHHTTSS
T ss_pred             ECCCCCCHHHHHHHHhcCc
Confidence            6999999999999999964

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=85.35  E-value=0.14  Score=48.24  Aligned_cols=18  Identities=28%  Similarity=0.512  Sum_probs=16.5

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|.+|+||||+++.|.+.
T Consensus       375 iG~sGSGKSTLar~La~~  392 (552)
T 3cr8_A          375 TGLSGAGKSTLARALAAR  392 (552)
T ss_dssp             EESSCHHHHHHHHHHHHH
T ss_pred             ECCCCChHHHHHHHHHHh
Confidence            599999999999999885

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=85.35  E-value=0.26  Score=43.69  Aligned_cols=16  Identities=38%  Similarity=0.752  Sum_probs=14.3

Q ss_pred             CCCCCCCHHHHHHHHh
Q 024586            1 MGKGGVGKSSTVNSII   16 (265)
Q Consensus         1 vG~tg~GKSSliN~ll   16 (265)
                      +|++|+||||++.+|.
T Consensus        31 ~G~NGaGKT~ileAI~   46 (371)
T 3auy_A           31 IGENGSGKSSIFEAVF   46 (371)
T ss_dssp             EECTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            4999999999998874

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=85.09  E-value=0.27  Score=39.63  Aligned_cols=17  Identities=24%  Similarity=0.386  Sum_probs=14.8

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|.+|+||||+.+.|..
T Consensus         6 ~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            6 LGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            48999999999999854

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=84.87  E-value=0.5  Score=41.09  Aligned_cols=17  Identities=35%  Similarity=0.519  Sum_probs=15.1

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      .|++|+||||++..+..
T Consensus        44 ~G~~G~GKT~la~~la~   60 (373)
T 1jr3_A           44 SGTRGVGKTSIARLLAK   60 (373)
T ss_dssp             ESCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            39999999999998875

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=84.79  E-value=0.4  Score=38.02  Aligned_cols=17  Identities=29%  Similarity=0.395  Sum_probs=15.0

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      .|.+|+||||+.+.|.+
T Consensus         8 ~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            8 DGPSASGKSSVARRVAA   24 (208)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            48999999999999865

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=84.76  E-value=0.35  Score=41.10  Aligned_cols=17  Identities=35%  Similarity=0.519  Sum_probs=15.4

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|.+|+||||+.+.|..
T Consensus         8 ~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            8 IGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999875

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=84.55  E-value=0.37  Score=39.90  Aligned_cols=17  Identities=24%  Similarity=0.417  Sum_probs=15.1

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|.+||||||+...|..
T Consensus        35 ~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           35 LGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999864

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=84.54  E-value=0.39  Score=42.20  Aligned_cols=51  Identities=16%  Similarity=0.239  Sum_probs=32.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCccc-cc--------CCCCCCCccEEEEeeeCCeEEEEEeCCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVT-VS--------TFQSEGPRPVMVSRSRAGFTLNIVDTPGL   53 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~-~~--------~~~~~t~~~~~~~~~~~g~~v~iiDTPG~   53 (265)
                      +|+||+|||+|...|...-... ++        ...-.|..+.  ..+..|.+..++|...+
T Consensus        46 ~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~--~eE~~gvphhlidi~~~  105 (339)
T 3a8t_A           46 MGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKIS--VPDRGGVPHHLLGEVDP  105 (339)
T ss_dssp             ECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCC--SGGGTTCCEESSSCBCG
T ss_pred             ECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCC--HHHHcCCCEeeccccCc
Confidence            5999999999999999763211 11        0112233322  34566777888887766

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=84.43  E-value=0.44  Score=37.67  Aligned_cols=18  Identities=28%  Similarity=0.494  Sum_probs=15.7

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      .|++|+|||+++..+...
T Consensus        44 ~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           44 SGPPGTGKTATAIALARD   61 (226)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999998764

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=84.28  E-value=0.44  Score=38.10  Aligned_cols=18  Identities=33%  Similarity=0.475  Sum_probs=15.6

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      .|++|+|||+++..+...
T Consensus        51 ~G~~G~GKT~l~~~~~~~   68 (250)
T 1njg_A           51 SGTRGVGKTSIARLLAKG   68 (250)
T ss_dssp             ECSTTSCHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999998753

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=83.99  E-value=0.26  Score=43.37  Aligned_cols=19  Identities=21%  Similarity=0.314  Sum_probs=16.8

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.+..
T Consensus       137 ~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          137 FGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             EESTTSSHHHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHHHh
Confidence            4899999999999999853

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=83.90  E-value=1.1  Score=44.07  Aligned_cols=18  Identities=33%  Similarity=0.678  Sum_probs=16.2

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|++|+|||+++..+.+.
T Consensus       197 ~G~pG~GKT~la~~la~~  214 (854)
T 1qvr_A          197 IGEPGVGKTAIVEGLAQR  214 (854)
T ss_dssp             EECTTSCHHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHHH
Confidence            499999999999999875

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=83.74  E-value=0.48  Score=35.71  Aligned_cols=18  Identities=17%  Similarity=0.252  Sum_probs=15.9

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      .|++|+|||++..+|...
T Consensus        30 ~G~~GtGKt~lA~~i~~~   47 (145)
T 3n70_A           30 YGAPGTGRMTGARYLHQF   47 (145)
T ss_dssp             ESSTTSSHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            499999999999998764

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=83.72  E-value=0.42  Score=41.68  Aligned_cols=53  Identities=17%  Similarity=0.212  Sum_probs=33.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCccc-cc--------CCCCCCCccEEEEeeeCCeEEEEEeCCCCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVT-VS--------TFQSEGPRPVMVSRSRAGFTLNIVDTPGLIE   55 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~-~~--------~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~   55 (265)
                      +|+||||||||...|...-... ++        ...-.|..+.  ..+.+|.+..++|.-.+.+
T Consensus         9 ~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~--~~E~~gvphhlid~~~~~e   70 (322)
T 3exa_A            9 VGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKIT--AEEMDGVPHHLIDIKDPSE   70 (322)
T ss_dssp             ECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCC--HHHHTTCCEESSSCBCTTS
T ss_pred             ECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCC--HHHHcCCCEEEeccCChhh
Confidence            4999999999999998643211 11        1122333332  3456777888888776654

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=83.68  E-value=0.42  Score=39.13  Aligned_cols=17  Identities=24%  Similarity=0.507  Sum_probs=15.0

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|.+|+||||+.+.|..
T Consensus        22 ~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           22 LGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999864

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=83.67  E-value=0.48  Score=38.98  Aligned_cols=18  Identities=28%  Similarity=0.558  Sum_probs=15.7

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      .|.+|+||||+++.|...
T Consensus        32 ~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           32 EGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             ECCTTSCHHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHHH
Confidence            499999999999998764

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=83.63  E-value=0.46  Score=39.52  Aligned_cols=18  Identities=33%  Similarity=0.649  Sum_probs=16.1

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      .|++|+|||+++.+|.+.
T Consensus        50 ~G~~GtGKT~la~~la~~   67 (268)
T 2r62_A           50 VGPPGTGKTLLAKAVAGE   67 (268)
T ss_dssp             BCSSCSSHHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHHH
Confidence            499999999999999864

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=83.28  E-value=0.5  Score=39.22  Aligned_cols=17  Identities=35%  Similarity=0.444  Sum_probs=14.9

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      .|.+|+||||+.+.|..
T Consensus        28 ~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           28 SGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999998854

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=83.18  E-value=0.45  Score=41.55  Aligned_cols=18  Identities=22%  Similarity=0.398  Sum_probs=16.0

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|.+|+||||+...|...
T Consensus        11 ~GptGsGKTtla~~La~~   28 (323)
T 3crm_A           11 MGPTAAGKTDLAMALADA   28 (323)
T ss_dssp             ECCTTSCHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999998864

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=83.15  E-value=0.38  Score=39.16  Aligned_cols=16  Identities=25%  Similarity=0.420  Sum_probs=13.6

Q ss_pred             CCCCCCCHHHHHHHHh
Q 024586            1 MGKGGVGKSSTVNSII   16 (265)
Q Consensus         1 vG~tg~GKSSliN~ll   16 (265)
                      +|++|+|||||+..++
T Consensus        29 ~G~~GsGKTtl~~~~~   44 (247)
T 2dr3_A           29 SGGPGTGKTIFSQQFL   44 (247)
T ss_dssp             EECTTSSHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            4899999999977665

>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*

Probab=83.08  E-value=3.1  Score=34.92  Aligned_cols=63  Identities=22%  Similarity=0.219  Sum_probs=35.9

Q ss_pred             EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEE-EEEeCccC
Q 024586           44 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRAL-IVLTHAQL  122 (265)
Q Consensus        44 ~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~i-vV~tk~D~  122 (265)
                      .+.|||||+.....    +......      .+|.+++|++.+.... ..-...++.+.+. +    .+++ +|+|+.|.
T Consensus       193 D~VIIDtpp~~~~~----d~~~l~~------~aD~vilVv~~~~~~~-~~~~~~~~~l~~~-~----~~~~GvVlN~~~~  256 (271)
T 3bfv_A          193 NFVIIDTPPVNTVT----DAQLFSK------FTGNVVYVVNSENNNK-DEVKKGKELIEAT-G----AKLLGVVLNRMPK  256 (271)
T ss_dssp             SEEEEECCCTTTCS----HHHHHHH------HHCEEEEEEETTSCCH-HHHHHHHHHHHTT-T----CEEEEEEEEEECC
T ss_pred             CEEEEeCCCCchHH----HHHHHHH------HCCEEEEEEeCCCCcH-HHHHHHHHHHHhC-C----CCEEEEEEeCCcC
Confidence            47999999975321    1111112      3589999977764321 2223344445432 1    3444 89999986

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=83.00  E-value=0.45  Score=41.82  Aligned_cols=18  Identities=17%  Similarity=0.279  Sum_probs=15.7

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|.|||||||+...|...
T Consensus        13 ~GptgSGKTtla~~La~~   30 (340)
T 3d3q_A           13 VGPTASGKTELSIEVAKK   30 (340)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCcCcHHHHHHHHHHH
Confidence            499999999999988753

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=82.97  E-value=0.39  Score=38.88  Aligned_cols=17  Identities=29%  Similarity=0.458  Sum_probs=14.8

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|.+|+||||+.+.|..
T Consensus        11 ~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A           11 IGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             EECTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            48999999999999853

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=82.94  E-value=0.31  Score=45.35  Aligned_cols=15  Identities=27%  Similarity=0.372  Sum_probs=13.7

Q ss_pred             CCCCCCCHHHHHHHH
Q 024586            1 MGKGGVGKSSTVNSI   15 (265)
Q Consensus         1 vG~tg~GKSSliN~l   15 (265)
                      +|++|+|||||++.|
T Consensus        45 ~G~nGsGKSTL~~~~   59 (525)
T 1tf7_A           45 SGTSGTGKTLFSIQF   59 (525)
T ss_dssp             EESTTSSHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHH
Confidence            599999999999995

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=82.79  E-value=0.48  Score=41.20  Aligned_cols=18  Identities=22%  Similarity=0.259  Sum_probs=16.0

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|+||||||+|...|...
T Consensus        16 ~GptgsGKt~la~~La~~   33 (316)
T 3foz_A           16 MGPTASGKTALAIELRKI   33 (316)
T ss_dssp             ECCTTSCHHHHHHHHHHH
T ss_pred             ECCCccCHHHHHHHHHHh
Confidence            499999999999999754

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=82.54  E-value=0.44  Score=40.99  Aligned_cols=18  Identities=28%  Similarity=0.407  Sum_probs=16.1

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      .|++|+|||++++++.+.
T Consensus        43 ~G~~GtGKT~la~~i~~~   60 (324)
T 1l8q_A           43 YGSVGTGKTHLLQAAGNE   60 (324)
T ss_dssp             ECSSSSSHHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHHH
Confidence            399999999999999874

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=82.23  E-value=0.46  Score=41.26  Aligned_cols=18  Identities=39%  Similarity=0.619  Sum_probs=16.2

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      .|++|+||||+++.+.+.
T Consensus        52 ~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           52 YGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             ECSSSSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999999875

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=81.96  E-value=0.43  Score=40.51  Aligned_cols=16  Identities=38%  Similarity=0.530  Sum_probs=14.6

Q ss_pred             CCCCCCCHHHHHHHHh
Q 024586            1 MGKGGVGKSSTVNSII   16 (265)
Q Consensus         1 vG~tg~GKSSliN~ll   16 (265)
                      .|.+||||||+.+.|.
T Consensus        81 ~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           81 TGISGSGKSSVAQRLK   96 (281)
T ss_dssp             EECTTSCHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            4899999999999987

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=81.89  E-value=0.41  Score=41.60  Aligned_cols=18  Identities=28%  Similarity=0.577  Sum_probs=16.1

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      .|++|+||||+++.+.+.
T Consensus        51 ~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           51 YGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             EECTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            489999999999999874

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=81.53  E-value=0.51  Score=40.36  Aligned_cols=18  Identities=33%  Similarity=0.517  Sum_probs=16.2

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      .|++|+|||++++++.+.
T Consensus        55 ~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           55 YGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             ECSSSSSHHHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHHHH
Confidence            499999999999999874

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=81.18  E-value=0.49  Score=38.68  Aligned_cols=17  Identities=35%  Similarity=0.280  Sum_probs=14.5

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      .|++|+|||+++.+|..
T Consensus        64 ~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           64 CGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             ESCGGGCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            39999999988888765

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=81.13  E-value=0.58  Score=38.32  Aligned_cols=17  Identities=29%  Similarity=0.347  Sum_probs=15.2

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|.+|+||||+.+.|.+
T Consensus        22 ~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           22 DGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             ECSSCSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999998875

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=81.03  E-value=0.47  Score=40.24  Aligned_cols=18  Identities=28%  Similarity=0.606  Sum_probs=16.0

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|++|+|||+++.+|.+.
T Consensus        53 ~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           53 LGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             ESCSSSSHHHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHHHH
Confidence            499999999999998874

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=80.98  E-value=0.68  Score=39.88  Aligned_cols=18  Identities=33%  Similarity=0.527  Sum_probs=15.8

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      .|++|+|||+|+.+|...
T Consensus       158 ~G~~GtGKT~La~aia~~  175 (308)
T 2qgz_A          158 YGDMGIGKSYLLAAMAHE  175 (308)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999998764

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=80.61  E-value=0.6  Score=39.81  Aligned_cols=17  Identities=29%  Similarity=0.429  Sum_probs=15.5

Q ss_pred             CCCCCCHHHHHHHHhCC
Q 024586            2 GKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         2 G~tg~GKSSliN~llg~   18 (265)
                      |++|+|||+++.++...
T Consensus        43 GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           43 GGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             ECTTSCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHH
Confidence            99999999999999864

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=80.61  E-value=0.6  Score=42.02  Aligned_cols=18  Identities=28%  Similarity=0.423  Sum_probs=16.0

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|.+|+||||+.+.|...
T Consensus       264 ~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          264 VGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             ESCTTSSHHHHHHHHTGG
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            599999999999998764

>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*

Probab=80.41  E-value=0.71  Score=43.44  Aligned_cols=18  Identities=39%  Similarity=0.553  Sum_probs=15.8

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      .|.||+|||+++|+|+-.
T Consensus       220 aG~TGSGKS~~L~tlI~s  237 (574)
T 2iut_A          220 AGTTGSGKSVGVNAMLLS  237 (574)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999998763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	265
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	2e-55
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	2e-05
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	1e-04
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	3e-04
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	3e-04
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	5e-04
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	0.002

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score =  176 bits (448), Expect = 2e-55
 Identities = 152/217 (70%), Positives = 181/217 (83%), Gaps = 1/217 (0%)

Query: 1   MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 60
           MGKGGVGKSSTVNSIIGE+ V++S FQSEGPRPVMVSRSRAGFTLNI+DTPGLIEGGY+N
Sbjct: 38  MGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYIN 97

Query: 61  YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA 120
             A+ +IK FLL+KTIDVLLYVDRLD YRVDNLDK + +AITD+FG+ IW +A++ LTHA
Sbjct: 98  DMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHA 157

Query: 121 QLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEK 180
           Q S PD L Y+ F SKRSEALL+ V     + KKD Q S +PVVL+ENSGRC KN++DEK
Sbjct: 158 QFSPPDGLPYDEFFSKRSEALLQVVRSGASL-KKDAQASDIPVVLIENSGRCNKNDSDEK 216

Query: 181 VLPNGTAWIPNLVKTITEVVLNGSKALLVDKKLVEGP 217
           VLPNG AWIP+LV+TITEV LN S+++ VDK L++  
Sbjct: 217 VLPNGIAWIPHLVQTITEVALNKSESIFVDKNLIDKL 253

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 41.6 bits (96), Expect = 2e-05
 Identities = 22/145 (15%), Positives = 42/145 (28%), Gaps = 3/145 (2%)

Query: 2   GKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY 61
           G    GKSS + ++            +     + V          + D PG+IEG     
Sbjct: 8   GYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEG---AS 64

Query: 62  HAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ 121
               L   FL +     +L              + + + +       + + +L+ L    
Sbjct: 65  EGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVD 124

Query: 122 LSLPDRLDYEVFCSKRSEALLKFVS 146
           L   + +        R    +  VS
Sbjct: 125 LLEEEAVKALADALAREGLAVLPVS 149

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.5 bits (94), Expect = 1e-04
 Identities = 32/213 (15%), Positives = 68/213 (31%), Gaps = 29/213 (13%)

Query: 1   MGKGGVGKSSTVNSIIGEKAVTVSTFQS---EGPRPVMVSRSRAGFTLNIVDTPGLIEGG 57
            G+ G GKSS +N++ G         ++   E        +      +   D PG+   G
Sbjct: 62  TGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGI---G 118

Query: 58  YVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVL 117
             N+     +++    +    ++        R    D  I +AI       + K    V 
Sbjct: 119 STNFPPDTYLEKMKFYEYDFFIIISAT----RFKKNDIDIAKAI-----SMMKKEFYFVR 169

Query: 118 THAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNEN 177
           T     + +  D E     + E +L+ +  +     ++   +  P+ L+ N   C  +  
Sbjct: 170 TKVDSDITNEADGEPQTFDK-EKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYD-- 226

Query: 178 DEKVLPNGTAWIPNLVKTITEVVLNGSKALLVD 210
                       P L+  +   +    +   + 
Sbjct: 227 -----------FPVLMDKLISDLPIYKRHNFMV 248

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 38.2 bits (87), Expect = 3e-04
 Identities = 27/135 (20%), Positives = 44/135 (32%), Gaps = 1/135 (0%)

Query: 1   MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 60
            G+   GKSS +N++ G +A  V+         +       G  L+I+DT GL E     
Sbjct: 7   AGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEV 66

Query: 61  YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQIT-RAITDNFGEQIWKRALIVLTH 119
                      + +   VL  VD      VD  +      A           R    +T 
Sbjct: 67  ERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITG 126

Query: 120 AQLSLPDRLDYEVFC 134
             L + +   + +  
Sbjct: 127 ETLGMSEVNGHALIR 141

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 38.0 bits (87), Expect = 3e-04
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 2/83 (2%)

Query: 1  MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 60
          +GK  VGKS+ +N ++ E    V+         +       G    IVDT G +     +
Sbjct: 6  VGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAG-VRSETND 64

Query: 61 YHAIQLIKRFLLN-KTIDVLLYV 82
                I+R L   +  D++L+V
Sbjct: 65 LVERLGIERTLQEIEKADIVLFV 87

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 37.7 bits (86), Expect = 5e-04
 Identities = 23/124 (18%), Positives = 42/124 (33%), Gaps = 3/124 (2%)

Query: 1   MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN 60
           +G+  VGKS+  N+I+ ++   VS        PV       G     VDT GL     V 
Sbjct: 14  VGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVE 73

Query: 61  YHAIQLIKRFLLNKTI---DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVL 117
              ++    + +  +I   DV++ V            +             +      ++
Sbjct: 74  PRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLV 133

Query: 118 THAQ 121
            H +
Sbjct: 134 VHRE 137

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 2  GKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY 61
          G   VGKS+ ++ +   K        +     + +  +  G +  + D PGLIEG    +
Sbjct: 8  GFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEG---AH 64

Query: 62 HAIQLIKRFL 71
            + L  +FL
Sbjct: 65 QGVGLGHQFL 74

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	265
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	100.0
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.76
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.74
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.71
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.69
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.67
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.67
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.63
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.62
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.61
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.52
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.5
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.49
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.48
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.47
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.46
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.46
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.45
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.44
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.44
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.44
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.43
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.43
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.43
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.42
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.41
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.4
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.39
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.39
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.38
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.38
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.37
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.37
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.37
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.37
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.35
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.34
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.34
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.33
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.33
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.33
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.32
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.31
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.31
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.3
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.3
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.29
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.28
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.28
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.27
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.27
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.26
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.26
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.26
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.26
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.25
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.25
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.23
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.22
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.21
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.21
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.21
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.21
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.2
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.2
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.2
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.2
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.17
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.17
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.15
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	99.14
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.14
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.08
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.07
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.04
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	98.98
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	98.92
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.84
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	98.84
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	98.83
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	98.82
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.79
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	98.78
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	98.74
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	98.73
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	98.71
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	98.7
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	98.68
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.63
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	98.61
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	98.52
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	98.46
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	98.1
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.06
d1okkd2	207	GTPase domain of the signal recognition particle r	97.82
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.81
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.77
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.71
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.68
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.56
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.07
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	95.76
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	95.71
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	95.67
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	95.65
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	95.64
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	95.56
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	95.56
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	95.54
d2awna2	232	Maltose transport protein MalK, N-terminal domain	95.54
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	95.52
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	95.49
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	95.49
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	95.49
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	95.38
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	95.37
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	95.37
d1g2912	240	Maltose transport protein MalK, N-terminal domain	95.24
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	95.18
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	95.15
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	95.08
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	95.07
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	95.0
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	94.93
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	94.68
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	94.6
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	94.48
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	94.44
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	94.36
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	94.29
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	94.01
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	93.86
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	93.74
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	93.71
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	93.6
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	93.59
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	93.38
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	93.33
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	93.22
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	93.17
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	93.16
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	93.11
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	93.06
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	93.02
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	93.01
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	93.01
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	92.72
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	92.61
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	92.58
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	92.57
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	91.93
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	91.85
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	91.64
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	91.51
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	91.47
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	91.4
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	91.29
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	91.08
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	91.06
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	91.02
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	90.76
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	90.62
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	90.54
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	90.31
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	89.84
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	89.67
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	89.67
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	89.65
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	89.6
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	89.49
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	89.39
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	89.29
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	89.09
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	88.84
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	88.82
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	88.63
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	88.46
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	88.46
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	88.43
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	88.37
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	88.21
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	88.2
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	88.09
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	87.98
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	87.82
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	87.77
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	87.32
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	87.18
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	87.08
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	86.99
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	86.59
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	86.56
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	86.13
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	86.11
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	86.06
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	85.38
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	85.26
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	84.9
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	84.83
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	84.68
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	84.47
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	84.42
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	84.27
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	84.21
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	83.81
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	83.69
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	83.54
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	83.47
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	83.34
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	83.26
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	83.07
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	82.77
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	82.43
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	82.37
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	82.23
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	81.55
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	80.46
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	80.16
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	80.07

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=100.00  E-value=4.7e-37  Score=263.62  Aligned_cols=215  Identities=71%  Similarity=1.115  Sum_probs=195.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|++|+|||||+|+|+|++++.++..+++|..+..+....+|..+.+|||||+.++...++.....+..+....++|+++
T Consensus        38 vG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~~~~~~i~~~~~~~~~~~il  117 (257)
T d1h65a_          38 MGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLL  117 (257)
T ss_dssp             EESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEE
T ss_pred             ECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccEEEEEEeeecccCCcchHHHHHHHHHHHHhcCCCCeEE
Confidence            69999999999999999999999988899999999999999999999999999988877888888888777777899999


Q ss_pred             EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHHHHHhhchHHHHHHHhccccccccccccCC
Q 024586           81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCSKRSEALLKFVSPSTWMKKKDIQGSF  160 (265)
Q Consensus        81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~  160 (265)
                      ||++++..+++..+...++.+.+.||+++|+++|+|+||+|..++++.++++|+....+.+.++|+.+..... +.+...
T Consensus       118 ~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~~~~~e~~~~~~~~~l~~~i~~~~~~~~-~~~~~~  196 (257)
T d1h65a_         118 YVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSKRSEALLQVVRSGASLKK-DAQASD  196 (257)
T ss_dssp             EEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHHHHHHHHHHHHHHHTTCCT-TSGGGC
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCCcCCCcHHHHHHhhhHHHHHHHHHHhhhhh-hhcccc
Confidence            9999998889999999999999999999999999999999998888889999999888999999988765433 223456


Q ss_pred             chhHhhhcCCcCCCCccccccCCCCCCChHHHHHHHHHHhhCCCcceecccccccC
Q 024586          161 VPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGSKALLVDKKLVEG  216 (265)
Q Consensus       161 ip~~~~~n~~~~~~~~~~~~~lp~~~~W~~~L~~~i~~~~~~~~~~~~~~~~~~~~  216 (265)
                      +|+.+++|.+.|++|+.+++++|++..|++.|+..+++.+.+++++++.++++++.
T Consensus       197 ~~~~l~en~~~~~~n~~~ekvlp~~~~~~~~lv~~i~~~~~~~~~~i~~~~~~i~~  252 (257)
T d1h65a_         197 IPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTITEVALNKSESIFVDKNLIDK  252 (257)
T ss_dssp             CCEEECCCCTTCCBCTTSCBBCTTSCBHHHHHHHHHHHHHTSSSCCEECCHHHHHH
T ss_pred             CCEEEEecCCcccccccccccccCCcchHHHHHHHHHHHHHcCCCCccccHHHHhh
Confidence            89999999999999999999999999999999999999999999999999887653

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.76  E-value=4.6e-18  Score=136.07  Aligned_cols=117  Identities=21%  Similarity=0.222  Sum_probs=91.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH-HHHHHHHHhcCCccEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA-IQLIKRFLLNKTIDVL   79 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~-~~~i~~~l~~~~~d~i   79 (265)
                      +|.+|||||||+|+|+|.+...++...++|...........+.++.++||||+.+......+. .+.+..+  ...+|++
T Consensus        11 vG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~--~~~ad~i   88 (178)
T d1wf3a1          11 VGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEA--LADVNAV   88 (178)
T ss_dssp             ECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHH--TSSCSEE
T ss_pred             ECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeeeeeeeecccccccccccccchhcccccccc--cccccce
Confidence            699999999999999999887778888888888888888899999999999997765443332 2222222  2578999


Q ss_pred             EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      |+|++.+. .++..+..+++.+.+..++   +|+++|+||+|+.
T Consensus        89 l~v~D~~~-~~~~~~~~i~~~l~~~~~~---~piilv~NK~Dl~  128 (178)
T d1wf3a1          89 VWVVDLRH-PPTPEDELVARALKPLVGK---VPILLVGNKLDAA  128 (178)
T ss_dssp             EEEEETTS-CCCHHHHHHHHHHGGGTTT---SCEEEEEECGGGC
T ss_pred             eeeechhh-hhcccccchhhheeccccc---hhhhhhhcccccc
Confidence            99977654 4777777777877665443   7999999999984

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=3.5e-18  Score=153.94  Aligned_cols=176  Identities=16%  Similarity=0.132  Sum_probs=109.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccc----cCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTV----STFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI   76 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~----~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~   76 (265)
                      +|++|||||||+|+|+|......    +....+|.....+. ..++.++.+|||||+++.....+++++.+.    ...+
T Consensus        62 ~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~-~~~~~~~~l~DtPG~~~~~~~~~~~~~~~~----~~~~  136 (400)
T d1tq4a_          62 TGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-HPNIPNVVFWDLPGIGSTNFPPDTYLEKMK----FYEY  136 (400)
T ss_dssp             EECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE-CSSCTTEEEEECCCGGGSSCCHHHHHHHTT----GGGC
T ss_pred             ECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeee-ccCCCeEEEEeCCCcccccccHHHHHHHhh----hhcc
Confidence            59999999999999999653222    22334555554443 345567899999999877666555554332    2367


Q ss_pred             cEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC-------CCCCCHHHHHhhchHHHHHHHhccc
Q 024586           77 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL-------PDRLDYEVFCSKRSEALLKFVSPST  149 (265)
Q Consensus        77 d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~-------~~~~~~~~~~~~~~~~l~~~i~~~~  149 (265)
                      |++|++  .+ .+++..|.++++.+.+..     +|+++|+||+|...       +.....+..++...+...+.++.. 
T Consensus       137 d~~l~~--~~-~~~~~~d~~l~~~l~~~~-----k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~~-  207 (400)
T d1tq4a_         137 DFFIII--SA-TRFKKNDIDIAKAISMMK-----KEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN-  207 (400)
T ss_dssp             SEEEEE--ES-SCCCHHHHHHHHHHHHTT-----CEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT-
T ss_pred             eEEEEe--cC-CCCCHHHHHHHHHHHHcC-----CCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHHHc-
Confidence            999888  34 378999999999998864     89999999998521       111122222221111111111111 


Q ss_pred             cccccccccCCchhHhhhcCCcCCCCccccccCCCCCCChHHHHHHHHHHhhCCCcceecc
Q 024586          150 WMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVLNGSKALLVD  210 (265)
Q Consensus       150 ~~~~~~~~~~~ip~~~~~n~~~~~~~~~~~~~lp~~~~W~~~L~~~i~~~~~~~~~~~~~~  210 (265)
                             .....|++++++.           .++..+  ++.|.+.+.+.++.++++.++.
T Consensus       208 -------~~~~~~vflvS~~-----------~~~~~d--~~~L~~~l~~~L~~~~~~~~~~  248 (400)
T d1tq4a_         208 -------GIAEPPIFLLSNK-----------NVCHYD--FPVLMDKLISDLPIYKRHNFMV  248 (400)
T ss_dssp             -------TCSSCCEEECCTT-----------CTTSTT--HHHHHHHHHHHSCGGGHHHHHH
T ss_pred             -------CCCCCCEEEecCC-----------cccccC--HHHHHHHHHHHhHHHHHHHHHH
Confidence                   1223455555532           122233  9999999999999988876654

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.71  E-value=1.7e-17  Score=132.75  Aligned_cols=113  Identities=17%  Similarity=0.153  Sum_probs=77.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHH----HHHH--hcC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLI----KRFL--LNK   74 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i----~~~l--~~~   74 (265)
                      +|.+|||||||+|+|+|+++ .++..+++|.....  ....  .+.++||||++..........+.+    ..+.  ...
T Consensus         6 vG~~nvGKSsLin~l~~~~~-~~~~~~g~T~~~~~--~~~~--~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (184)
T d2cxxa1           6 AGRSNVGKSTLIYRLTGKKV-RRGKRPGVTRKIIE--IEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAK   80 (184)
T ss_dssp             EEBTTSSHHHHHHHHHSCCC-SSSSSTTCTTSCEE--EEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGG
T ss_pred             ECCCCCCHHHHHHHHhCCCc-eeeCCCCEeecccc--cccc--cceecccCCceeccccccccccccchhhhhhhhhccc
Confidence            69999999999999999886 57777778877543  2333  357899999876544443322222    2222  224


Q ss_pred             CccEEEEEEecCC----------cCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           75 TIDVLLYVDRLDV----------YRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        75 ~~d~iL~V~~~d~----------~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      .+|++++|++...          ......|..+++.+.+..     +|+++|+||+|+.
T Consensus        81 ~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~-----~p~iiv~NK~D~~  134 (184)
T d2cxxa1          81 NIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELD-----IPTIVAVNKLDKI  134 (184)
T ss_dssp             GCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTT-----CCEEEEEECGGGC
T ss_pred             ccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHcC-----CCEEEEEeeeehh
Confidence            6899999965421          124455666777666542     8999999999974

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.69  E-value=3.9e-16  Score=123.75  Aligned_cols=115  Identities=19%  Similarity=0.276  Sum_probs=76.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCC--cHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYV--NYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~--~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|+|+|.....++...++|...........+..+.++||||+.+....  ...........+  ..+|+
T Consensus         6 iG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~--~~ad~   83 (171)
T d1mkya1           6 VGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMI--READL   83 (171)
T ss_dssp             ECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHH--TTCSE
T ss_pred             ECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccccccccccccceeeeecccccccccccccccc--ccCcE
Confidence            69999999999999999887677777788888777788888899999999998765322  222222222222  47899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ++++...+. .+...+..+++.+.+..     +|+++|+||+|+.
T Consensus        84 i~~~~~~~~-~~~~~~~~~~~~l~~~~-----~pviiv~NK~Dl~  122 (171)
T d1mkya1          84 VLFVVDGKR-GITKEDESLADFLRKST-----VDTILVANKAENL  122 (171)
T ss_dssp             EEEEEETTT-CCCHHHHHHHHHHHHHT-----CCEEEEEESCCSH
T ss_pred             EEEeecccc-ccccccccccccccccc-----ccccccchhhhhh
Confidence            999866543 47777888888777654     7999999999983

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.67  E-value=5.5e-16  Score=124.22  Aligned_cols=115  Identities=23%  Similarity=0.312  Sum_probs=81.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCC---------CcHHHHHHHHHHH
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY---------VNYHAIQLIKRFL   71 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~---------~~~~~~~~i~~~l   71 (265)
                      +|.+|||||||+|+|+|.+...++....+|..+......+++..+.++||||+.....         ........+.   
T Consensus        14 iG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~---   90 (186)
T d1mkya2          14 VGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIE---   90 (186)
T ss_dssp             ECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHHH---
T ss_pred             ECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCceeeeeccCCccccccccccccccchhHHHHHHHh---
Confidence            6999999999999999998877888877777777778889999999999999864221         1123333333   


Q ss_pred             hcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCC
Q 024586           72 LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR  127 (265)
Q Consensus        72 ~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~  127 (265)
                         .+|++++|++.+. ........++..+....     .|+|+|+||+|+.....
T Consensus        91 ---~~dvii~v~d~~~-~~~~~~~~~~~~~~~~~-----~~~i~v~nK~D~~~~~~  137 (186)
T d1mkya2          91 ---KADVVVIVLDATQ-GITRQDQRMAGLMERRG-----RASVVVFNKWDLVVHRE  137 (186)
T ss_dssp             ---HCSEEEEEEETTT-CCCHHHHHHHHHHHHTT-----CEEEEEEECGGGSTTGG
T ss_pred             ---cCCEEEEeecccc-cchhhHHHHHHHHHHcC-----Cceeeeccchhhhcchh
Confidence               6799999976653 46777777777776643     89999999999864443

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.67  E-value=1.2e-16  Score=127.84  Aligned_cols=115  Identities=19%  Similarity=0.267  Sum_probs=71.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEE-EEeeeCCeEEEEEeCCCCCCCCCCc----HHHHHHHHHHHhcCC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVM-VSRSRAGFTLNIVDTPGLIEGGYVN----YHAIQLIKRFLLNKT   75 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~-~~~~~~g~~v~iiDTPG~~~~~~~~----~~~~~~i~~~l~~~~   75 (265)
                      +|.+|||||||+|+|+|.... +....+.|..... ......+..+.++||||+.+.....    ..++..+      ..
T Consensus         7 vG~~nvGKSTLin~L~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~------~~   79 (180)
T d1udxa2           7 VGYPNAGKSSLLAAMTRAHPK-IAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHI------AR   79 (180)
T ss_dssp             ECCGGGCHHHHHHHHCSSCCE-ECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHH------TS
T ss_pred             ECCCCCCHHHHHHHHhCCCCc-eeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHH------Hh
Confidence            699999999999999998864 3444445555444 3344567789999999987643221    2233332      47


Q ss_pred             ccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           76 IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        76 ~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +++++++++... ........+...+.........+|+++|+||+|+.
T Consensus        80 ~~~~~~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~  126 (180)
T d1udxa2          80 TRVLLYVLDAAD-EPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLL  126 (180)
T ss_dssp             SSEEEEEEETTS-CHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTS
T ss_pred             hhhhhhhccccc-ccccchhhhhhhhhccccccchhhhhhhhhhhhhh
Confidence            799999966543 11122222223332221122237999999999995

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=1.5e-15  Score=118.71  Aligned_cols=118  Identities=19%  Similarity=0.199  Sum_probs=83.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHH-HHHHHHHHHhcCCccEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYH-AIQLIKRFLLNKTIDVL   79 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~-~~~~i~~~l~~~~~d~i   79 (265)
                      +|.+|||||||+|+|+|.+...++..++++...........+.++.++||||+.+.....+. .......+  ...+|++
T Consensus         7 vG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~--~~~~d~~   84 (161)
T d2gj8a1           7 AGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQE--IEQADRV   84 (161)
T ss_dssp             EESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHH--HHTCSEE
T ss_pred             ECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccCceeeeccccccccccccchhHHHHHHHHH--HHhcccc
Confidence            59999999999999999987777777777777777788899999999999999876443322 11111111  2478999


Q ss_pred             EEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           80 LYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        80 L~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +++++..... ...+...+..+.+.....  +|+++|+||+|+.
T Consensus        85 i~~~d~~~~~-~~~~~~~~~~~~~~~~~~--~~iilv~NK~Dl~  125 (161)
T d2gj8a1          85 LFMVDGTTTD-AVDPAEIWPEFIARLPAK--LPITVVRNKADIT  125 (161)
T ss_dssp             EEEEETTTCC-CCSHHHHCHHHHHHSCTT--CCEEEEEECHHHH
T ss_pred             ceeecccccc-chhhhhhhhhhhhhcccc--cceeeccchhhhh
Confidence            9997766533 223334444343333333  8999999999984

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.62  E-value=1.4e-15  Score=118.75  Aligned_cols=110  Identities=26%  Similarity=0.374  Sum_probs=82.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCC--Cc----HHHHHHHHHHHhcC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY--VN----YHAIQLIKRFLLNK   74 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~--~~----~~~~~~i~~~l~~~   74 (265)
                      +|.+|||||||+|+|+|++...++..+++|...........+..+.++||||+.....  .+    +.++..+.      
T Consensus         6 iG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~------   79 (160)
T d1xzpa2           6 VGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIE------   79 (160)
T ss_dssp             ECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHH------
T ss_pred             ECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHHH------
Confidence            6999999999999999998877888888888887788888999999999999865321  11    23333333      


Q ss_pred             CccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           75 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        75 ~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      .+|++++|++.+. .....+..+...+.       ..++++++||.|+.+
T Consensus        80 ~ad~ii~v~d~~~-~~~~~~~~~~~~~~-------~~~~i~~~~k~d~~~  121 (160)
T d1xzpa2          80 KADIVLFVLDASS-PLDEEDRKILERIK-------NKRYLVVINKVDVVE  121 (160)
T ss_dssp             HCSEEEEEEETTS-CCCHHHHHHHHHHT-------TSSEEEEEEECSSCC
T ss_pred             hCCEEEEEEeCCC-Ccchhhhhhhhhcc-------cccceeeeeeccccc
Confidence            6799999977764 34555555444332       178999999999853

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.61  E-value=2.8e-15  Score=120.13  Aligned_cols=116  Identities=19%  Similarity=0.283  Sum_probs=73.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEee-eCCeEEEEEeCCCCCCCCCCc----HHHHHHHHHHHhcCC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS-RAGFTLNIVDTPGLIEGGYVN----YHAIQLIKRFLLNKT   75 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~-~~g~~v~iiDTPG~~~~~~~~----~~~~~~i~~~l~~~~   75 (265)
                      +|.+|||||||+|+|+|.++ .++...++|......... .++..+.++||||+.+.....    ...+..+.      .
T Consensus         7 iG~~nvGKSSLin~L~~~~~-~~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~------~   79 (185)
T d1lnza2           7 VGFPSVGKSTLLSVVSSAKP-KIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIE------R   79 (185)
T ss_dssp             ESSTTSSHHHHHHHSEEECC-EESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHH------H
T ss_pred             ECCCCCCHHHHHHHHhCCCC-ceecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHHH------H
Confidence            69999999999999999887 445556666665554444 467889999999985422221    23344443      4


Q ss_pred             ccEEEEEEecCCcC-CCHHHHHH-HHHHHHhcCcC-cCCcEEEEEeCccCC
Q 024586           76 IDVLLYVDRLDVYR-VDNLDKQI-TRAITDNFGEQ-IWKRALIVLTHAQLS  123 (265)
Q Consensus        76 ~d~iL~V~~~d~~r-~~~~d~~~-l~~l~~~~g~~-~~~~~ivV~tk~D~~  123 (265)
                      ++++++++...... ....+... .......+... ..+|+++|+||+|+.
T Consensus        80 ~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~  130 (185)
T d1lnza2          80 TRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMP  130 (185)
T ss_dssp             CCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTST
T ss_pred             hhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchH
Confidence            57777775444322 33333322 22333333322 347899999999984

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=9.5e-14  Score=109.57  Aligned_cols=119  Identities=20%  Similarity=0.102  Sum_probs=74.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|++++...  .....++...........++.  .+.+|||+|.....   ......+      ..+|+
T Consensus         8 iG~~~vGKTsLi~r~~~~~f--~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~---~~~~~~~------~~a~~   76 (171)
T d2erxa1           8 FGAGGVGKSSLVLRFVKGTF--RESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFP---AMQRLSI------SKGHA   76 (171)
T ss_dssp             ECCTTSSHHHHHHHHHTCCC--CSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCH---HHHHHHH------HHCSE
T ss_pred             ECCCCCCHHHHHHHHHhCCC--CCccCcceeeccccceeeccccceecccccccccccc---ccccccc------cceeE
Confidence            69999999999999998762  233334444444445556665  56789999975432   1111122      26799


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCH
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY  130 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~  130 (265)
                      +++|+++++......-..++..+.+..+.....|+++|+||+|+...+..+.
T Consensus        77 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~  128 (171)
T d2erxa1          77 FILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQS  128 (171)
T ss_dssp             EEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCH
T ss_pred             EEEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccH
Confidence            9999888753222223455555655554434479999999999864444443

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=1.7e-13  Score=107.54  Aligned_cols=116  Identities=15%  Similarity=0.083  Sum_probs=75.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCC-CCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~-t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (265)
                      +|.+|||||||+|++++...  .....++ +...........+.  .+.+|||+|..+........   +      ..+|
T Consensus         8 iG~~~vGKSsLi~rl~~~~~--~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~---~------~~~~   76 (164)
T d1z2aa1           8 VGNGAVGKSSMIQRYCKGIF--TKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAY---Y------RGAQ   76 (164)
T ss_dssp             ECSTTSSHHHHHHHHHHCCC--CCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHH---H------TTCC
T ss_pred             ECCCCcCHHHHHHHHHhCCC--CcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhh---h------ccCc
Confidence            69999999999999997652  2222222 22334444555554  56899999986654444322   1      3789


Q ss_pred             EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCH
Q 024586           78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY  130 (265)
Q Consensus        78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~  130 (265)
                      ++++|+++++....+.-..+++.+.+..+.   .|+++|+||+|+...+..+.
T Consensus        77 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~iilVgnK~Dl~~~~~v~~  126 (164)
T d1z2aa1          77 ACVLVFSTTDRESFEAISSWREKVVAEVGD---IPTALVQNKIDLLDDSCIKN  126 (164)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHCS---CCEEEEEECGGGGGGCSSCH
T ss_pred             eEEEEEeccchhhhhhcccccccccccCCC---ceEEEeeccCCcccceeeee
Confidence            999998887643222334566777665543   78999999999854443333

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.49  E-value=3.9e-13  Score=108.30  Aligned_cols=114  Identities=20%  Similarity=0.197  Sum_probs=70.7

Q ss_pred             CCCCCCCHHHHHHHHhCCC-cccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcH---HHHHHHHHHH-hcCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK-AVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNY---HAIQLIKRFL-LNKT   75 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~-~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~---~~~~~i~~~l-~~~~   75 (265)
                      +|.+|||||||+|+|+|.+ .+.++..+.+|.........   ..+.++|++|.+.......   .....+.... ....
T Consensus        29 vG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (195)
T d1svia_          29 AGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN---DELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREE  105 (195)
T ss_dssp             EEBTTSSHHHHHHHHHTC-------------CCEEEEEET---TTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTT
T ss_pred             ECCCCCCHHHHHHHhcCCCceEEeecccceeeeccccccc---ccceEEEEEeeccccccccccchhhhHHhhhhccccc
Confidence            6999999999999999975 33555555555554333322   3456799988865443322   1122222222 3357


Q ss_pred             ccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           76 IDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        76 ~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|++++|++.+. .++..+.++++.+....     +|+++|+||+|+.
T Consensus       106 ~~~vi~viD~~~-~~~~~~~~~~~~l~~~~-----~piivv~NK~D~~  147 (195)
T d1svia_         106 LKAVVQIVDLRH-APSNDDVQMYEFLKYYG-----IPVIVIATKADKI  147 (195)
T ss_dssp             EEEEEEEEETTS-CCCHHHHHHHHHHHHTT-----CCEEEEEECGGGS
T ss_pred             hhhhhhhhhccc-ccccccccccccccccc-----Ccceechhhcccc
Confidence            799999965543 47888899999888753     8999999999985

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.3e-13  Score=106.92  Aligned_cols=117  Identities=16%  Similarity=0.076  Sum_probs=74.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|++++.+... ...+..+..........++.  .+.++||||......   -....+      ..+|+
T Consensus        10 vG~~~vGKTsli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~---~~~~~~------~~~d~   79 (166)
T d1z0fa1          10 IGDMGVGKSCLLHQFTEKKFMA-DCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRA---VTRSYY------RGAAG   79 (166)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCCS-SCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCH---HHHHHH------HTCSE
T ss_pred             ECCCCcCHHHHHHHHHhCCCCC-cccccccccceeEEEEECCEEEEEEEeccCCchhHHH---HHHHHh------cCCcE
Confidence            6999999999999999876322 22222333334445556665  678999999743321   111122      27899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD  129 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~  129 (265)
                      +++|+++++......-..++..+.+.....  .|+++|.||+|+.......
T Consensus        80 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilvgnK~Dl~~~~~~~  128 (166)
T d1z0fa1          80 ALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIILIGNKADLEAQRDVT  128 (166)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSC
T ss_pred             EEEEeccCchHHHHHHHHHHHHHHhhcccc--ceEEEEcccccchhhcccH
Confidence            999988876432233345566666655443  7899999999985444433

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.47  E-value=2.8e-13  Score=108.05  Aligned_cols=108  Identities=13%  Similarity=0.112  Sum_probs=69.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCC------CCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQS------EGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNK   74 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~------~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~   74 (265)
                      +|.+++|||||+|+|++.......+...      .|...........+..+.++||||..       +..+.+...+  .
T Consensus        11 iG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~-------~~~~~~~~~l--~   81 (179)
T d1wb1a4          11 FGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHA-------DLIRAVVSAA--D   81 (179)
T ss_dssp             EECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHH-------HHHHHHHHHT--T
T ss_pred             EeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCcccccccccccc-------ccccchhhhh--h
Confidence            6999999999999999865433222211      11112223445678889999999962       3444444443  4


Q ss_pred             CccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           75 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        75 ~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      .+|++++|++... .....++..+..+....     .|+++|+||+|+.
T Consensus        82 ~~d~~ilv~d~~~-g~~~~~~~~~~~~~~~~-----~p~iiv~NKiD~~  124 (179)
T d1wb1a4          82 IIDLALIVVDAKE-GPKTQTGEHMLILDHFN-----IPIIVVITKSDNA  124 (179)
T ss_dssp             SCCEEEEEEETTT-CSCHHHHHHHHHHHHTT-----CCBCEEEECTTSS
T ss_pred             hcccccccccccc-ccchhhhhhhhhhhhcC-----Ccceecccccccc
Confidence            7899999966554 36677777777666543     7999999999985

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=3.6e-13  Score=106.65  Aligned_cols=112  Identities=23%  Similarity=0.185  Sum_probs=74.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|++++...  .....+++.........++|.  .+.+|||+|..+.......   .++      .+|+
T Consensus        12 vG~~~vGKTsLi~r~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~---~~~------~~~~   80 (173)
T d2fn4a1          12 VGGGGVGKSALTIQFIQSYF--VSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQ---YMR------AGHG   80 (173)
T ss_dssp             EECTTSSHHHHHHHHHHSSC--CSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHH---HHH------HCSE
T ss_pred             ECCCCcCHHHHHHHHHhCCC--CcccccccccceeeEeccCCeeeeeeccccccccccccccch---hhc------ccee
Confidence            69999999999999997652  333444444444555666775  4578999998765433322   222      6799


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      +++|++++.......-..++..+.+..+.. ..|+++|+||+|+..
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~-~~p~ilvgnK~Dl~~  125 (173)
T d2fn4a1          81 FLLVFAINDRQSFNEVGKLFTQILRVKDRD-DFPVVLVGNKADLES  125 (173)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHTSS-CCCEEEEEECGGGGG
T ss_pred             eeeecccccccccchhhhhhHHHHHHhccC-CCceEEEEEeechhh
Confidence            999988876432222345566555544321 268999999999853

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.46  E-value=1.4e-13  Score=107.86  Aligned_cols=108  Identities=19%  Similarity=0.218  Sum_probs=70.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+|||||||+|+|.+.....    ..+|..........++..+.+|||||...       .......  ....+|+++
T Consensus         8 vG~~~~GKTsLi~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~G~~~-------~~~~~~~--~~~~~~~~i   74 (165)
T d1ksha_           8 LGLDNAGKTTILKKFNGEDVDT----ISPTLGFNIKTLEHRGFKLNIWDVGGQKS-------LRSYWRN--YFESTDGLI   74 (165)
T ss_dssp             ECSTTSSHHHHHHHHTTCCCSS----CCCCSSEEEEEEEETTEEEEEEEECCSHH-------HHTTGGG--GCTTCSEEE
T ss_pred             ECCCCCCHHHHHHHHcCCCCCc----ccceEeeeeeeccccccceeeeecCcchh-------hhhHHHh--hhhhhhcce
Confidence            6999999999999999876421    23455556667788899999999999521       1111111  225789999


Q ss_pred             EEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           81 YVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|++..+.. +......+.+.+......  ..|+++|+||+|+.
T Consensus        75 ~v~d~~d~~~~~~~~~~~~~~~~~~~~~--~~p~iiv~nK~Dl~  116 (165)
T d1ksha_          75 WVVDSADRQRMQDCQRELQSLLVEERLA--GATLLIFANKQDLP  116 (165)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGT--TCEEEEEEECTTST
T ss_pred             eeeecccchhHHHHHHhhhhhhhhcccC--CCceEEEEeccccc
Confidence            998766532 222222333333222222  27999999999984

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.8e-13  Score=107.43  Aligned_cols=112  Identities=16%  Similarity=0.085  Sum_probs=74.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|++++...... ..+..+..........++.  .+.++||||..+........   +      ..+|+
T Consensus        10 vG~~~vGKTsLi~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~---~------~~~~~   79 (175)
T d2f9la1          10 IGDSGVGKSNLLSRFTRNEFNLE-SKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAY---Y------RGAVG   79 (175)
T ss_dssp             ESSTTSSHHHHHHHHHHSCCCC----CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHH---H------TTCSE
T ss_pred             ECCCCcCHHHHHHHHHhCCCCCc-ccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHH---h------hccCe
Confidence            69999999999999998763222 1222333333445556664  67899999975443333221   1      37899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      +++|++++..........++..+.+.++++  .|+++|+||+|+.+
T Consensus        80 ~i~v~d~~~~~S~~~~~~~~~~i~~~~~~~--~piilvgnK~Dl~~  123 (175)
T d2f9la1          80 ALLVYDIAKHLTYENVERWLKELRDHADSN--IVIMLVGNKSDLRH  123 (175)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGG
T ss_pred             EEEEEECCCcccchhHHHHHHHHHHhcCCC--CcEEEEEeeecccc
Confidence            999988875332233455677777776654  69999999999853

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.44  E-value=2.2e-13  Score=109.93  Aligned_cols=117  Identities=19%  Similarity=0.168  Sum_probs=71.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCC-CCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~-t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (265)
                      +|.+|||||||+|.|++...  .....++ +.........+++  ..+.+|||||..+.......       ++  ..+|
T Consensus        12 vG~~~vGKTsli~~l~~~~~--~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~-------~~--~~a~   80 (194)
T d2bcgy1          12 IGNSGVGKSCLLLRFSDDTY--TNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSS-------YY--RGSH   80 (194)
T ss_dssp             EESTTSSHHHHHHHHHHCCC--CTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGG-------GG--TTCS
T ss_pred             ECCCCcCHHHHHHHHhhCCC--CCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHH-------Hh--ccCC
Confidence            69999999999999997652  2222222 2222233444554  46789999997654333221       11  4789


Q ss_pred             EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCH
Q 024586           78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY  130 (265)
Q Consensus        78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~  130 (265)
                      ++++|++++.......-..+...+.+.....  .|+++|.||+|+......+.
T Consensus        81 ~~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~--~~iilv~nK~D~~~~~~~~~  131 (194)
T d2bcgy1          81 GIIIVYDVTDQESFNGVKMWLQEIDRYATST--VLKLLVGNKCDLKDKRVVEY  131 (194)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECTTCTTTCCSCH
T ss_pred             EEEEEEeCcchhhhhhHhhhhhhhhhcccCC--ceEEEEEeccccccccchhH
Confidence            9999988775322222333444455544433  78999999999865444333

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.9e-13  Score=107.89  Aligned_cols=115  Identities=16%  Similarity=0.149  Sum_probs=71.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|+|.+... .....+..+.........+++.  .+.+|||||...       .......+  ..++|+
T Consensus        11 vG~~~vGKTsLi~~l~~~~f-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~-------~~~~~~~~--~~~~~~   80 (171)
T d2ew1a1          11 IGNAGVGKTCLVRRFTQGLF-PPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER-------FRSITQSY--YRSANA   80 (171)
T ss_dssp             EESTTSSHHHHHHHHHHSSC-CTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG-------GHHHHGGG--STTCSE
T ss_pred             ECCCCcCHHHHHHHHHhCCC-CCcccccccceEEEEEEEECCEEEEEEEEECCCchh-------hHHHHHHH--Hhccce
Confidence            69999999999999998753 2222222333444445566665  467899999521       11111212  248899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDR  127 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~  127 (265)
                      +++|++++.........+++..+.+.....  .|+++|.||+|+.....
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~~ilvgnK~D~~~~~~  127 (171)
T d2ew1a1          81 LILTYDITCEESFRCLPEWLREIEQYASNK--VITVLVGNKIDLAERRE  127 (171)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCS
T ss_pred             EEEeeecccchhhhhhhhhhhhhccccccc--ccEEEEEeecccccccc
Confidence            999988775332233344555555544433  78999999999854333

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.44  E-value=2.8e-13  Score=112.23  Aligned_cols=110  Identities=11%  Similarity=0.027  Sum_probs=73.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEE------------------EEeeeCCeEEEEEeCCCCCCCCCCcHH
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVM------------------VSRSRAGFTLNIVDTPGLIEGGYVNYH   62 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~------------------~~~~~~g~~v~iiDTPG~~~~~~~~~~   62 (265)
                      +|.+++|||||+|+|++....... ....|.....                  .....++..++++||||..+....-. 
T Consensus        11 iGh~d~GKSTL~~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~~-   88 (227)
T d1g7sa4          11 LGHVDHGKTTLLDHIRGSAVASRE-AGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRK-   88 (227)
T ss_dssp             ECSTTSSHHHHHHHHHHHHHSCC-----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSBC-
T ss_pred             EeCCCccHHHHHHHHHhhcchhee-cCceeeeccccccccccccccccccccceeecccccccccccccceecccccch-
Confidence            699999999999999986432111 1111111111                  12345677899999999755322111 


Q ss_pred             HHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCC
Q 024586           63 AIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD  126 (265)
Q Consensus        63 ~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~  126 (265)
                        .      ....+|++++|++... .+...+...++.+....     .|+|+|+||+|+...+
T Consensus        89 --~------~~~~~D~~ilVvda~~-g~~~~~~~~~~~~~~~~-----~p~iivlNK~D~~~~~  138 (227)
T d1g7sa4          89 --R------GGALADLAILIVDINE-GFKPQTQEALNILRMYR-----TPFVVAANKIDRIHGW  138 (227)
T ss_dssp             --S------SSBSCSEEEEEEETTT-CCCHHHHHHHHHHHHTT-----CCEEEEEECGGGSTTC
T ss_pred             --h------cccccceEEEEEeccc-CcccchhHHHHHhhcCC-----CeEEEEEECccCCCch
Confidence              1      1136899999976553 48899999998888764     8999999999986433

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.43  E-value=3.2e-13  Score=106.50  Aligned_cols=116  Identities=16%  Similarity=0.125  Sum_probs=69.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCC-CCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQS-EGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~-~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (265)
                      +|.+|||||||+|+|.+....  ....+ .+...........+  ..+.+|||||..+.        ..+... ..+++|
T Consensus        11 vG~~~vGKTsLi~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~--------~~~~~~-~~~~ad   79 (169)
T d3raba_          11 IGNSSVGKTSFLFRYADDSFT--PAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERY--------RTITTA-YYRGAM   79 (169)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCC--SSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG--------HHHHHT-TTTTCC
T ss_pred             ECCCCcCHHHHHHHHHcCCCC--cccccccccceeeEEEEeecceEEEEEEECCCchhh--------HHHHHH-HHhcCC
Confidence            699999999999999977531  22222 22223333344444  46789999996321        122221 125889


Q ss_pred             EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCC
Q 024586           78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD  129 (265)
Q Consensus        78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~  129 (265)
                      ++++|++++.......-..++..+.......  .++++|+||+|+......+
T Consensus        80 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iivv~nK~D~~~~~~v~  129 (169)
T d3raba_          80 GFILMYDITNEESFNAVQDWSTQIKTYSWDN--AQVLLVGNKCDMEDERVVS  129 (169)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHCCSC--CEEEEEEECTTCGGGCCSC
T ss_pred             EEEEEEECccchhhhhhhhhhhhhhcccCCc--ceEEEEEeecccccccccc
Confidence            9999988775321122234444454444333  7889999999985433333

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.43  E-value=3.7e-13  Score=109.17  Aligned_cols=109  Identities=12%  Similarity=0.019  Sum_probs=74.0

Q ss_pred             CCCCCCCHHHHHHHHhCCC------cc---------cccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHH
Q 024586            1 MGKGGVGKSSTVNSIIGEK------AV---------TVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQ   65 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~------~~---------~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~   65 (265)
                      +|..++|||||+|+|++..      ..         ......+.|.......+.+.++.++++||||..       ++..
T Consensus         9 iGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~-------~f~~   81 (196)
T d1d2ea3           9 IGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHA-------DYVK   81 (196)
T ss_dssp             ESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHH-------HHHH
T ss_pred             EeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchH-------HHHH
Confidence            5889999999999998520      00         000111234444455667789999999999963       3333


Q ss_pred             HHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           66 LIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        66 ~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      .+.+.+  ..+|++|+|++... ....++++.+..+.....    +++||++||+|+.
T Consensus        82 ~~~~~~--~~aD~allVVda~~-G~~~QT~~~~~~a~~~~~----~~iIv~iNK~D~~  132 (196)
T d1d2ea3          82 NMITGT--APLDGCILVVAAND-GPMPQTREHLLLARQIGV----EHVVVYVNKADAV  132 (196)
T ss_dssp             HHHHTS--SCCSEEEEEEETTT-CSCHHHHHHHHHHHHTTC----CCEEEEEECGGGC
T ss_pred             HHHHHH--hhcCeEEEEEEcCC-CCchhHHHHHHHHHHhcC----CcEEEEEeccccc
Confidence            443322  47899999976654 477778877777766431    6899999999985

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=9.1e-13  Score=103.92  Aligned_cols=118  Identities=20%  Similarity=0.146  Sum_probs=72.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|++++..  ......++..........+++.  .+.+|||+|..+....   ....++      .+|+
T Consensus        11 vG~~~vGKTsLi~r~~~~~--f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~---~~~~~~------~~~~   79 (171)
T d2erya1          11 VGGGGVGKSALTIQFIQSY--FVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAM---REQYMR------TGEG   79 (171)
T ss_dssp             EECTTSSHHHHHHHHHHSC--CCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHH---HHHHHH------HCSE
T ss_pred             ECCCCCCHHHHHHHHHhCC--CCcccCcccccceeeeeeeccccccccccccccccccccc---cccccc------ccce
Confidence            6999999999999999865  2333344444445555666665  5789999998654321   111222      6799


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCH
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY  130 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~  130 (265)
                      +++|++++.......-..++..+.+..+.. ..|+++|+||+|+......+.
T Consensus        80 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~-~~p~ilvgnK~Dl~~~~~v~~  130 (171)
T d2erya1          80 FLLVFSVTDRGSFEEIYKFQRQILRVKDRD-EFPMILIGNKADLDHQRQVTQ  130 (171)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTSS-CCSEEEEEECTTCTTSCSSCH
T ss_pred             EEEeeccccccchhhHHHHhHHHHhhcccC-CCCEEEEEeccchhhhccchH
Confidence            999988875332222334555444444322 378999999999854444444

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=5.1e-13  Score=105.25  Aligned_cols=115  Identities=14%  Similarity=0.040  Sum_probs=66.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|.+.+....   ...+++.........+++.  .+.+|||||..+.....       ..++  .++|+
T Consensus         7 vG~~~vGKTsLi~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~-------~~~~--~~~d~   74 (168)
T d2gjsa1           7 LGAPGVGKSALARIFGGVEDG---PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLP-------GHCM--AMGDA   74 (168)
T ss_dssp             ECCTTSSHHHHHHHHHTC------------CEEEEEEEEETTEEEEEEEEECC-------CH-------HHHH--TSCSE
T ss_pred             ECCCCcCHHHHHHHHhCCccC---CcCCeeeeeecceeeccccccceeeeecccccccceec-------ccch--hhhhh
Confidence            699999999999999987532   1222333333344556665  56899999974432221       1222  48899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRL  128 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~  128 (265)
                      +++|++++.......-..++..+....+. ...|+++|+||+|+......
T Consensus        75 ~ilv~d~t~~~s~~~~~~~~~~i~~~~~~-~~~piilvgnK~Dl~~~~~v  123 (168)
T d2gjsa1          75 YVIVYSVTDKGSFEKASELRVQLRRARQT-DDVPIILVGNKSDLVRSREV  123 (168)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCGGGCCS
T ss_pred             hceeccccccccccccccccchhhccccc-ccceEEEeecccchhhhcch
Confidence            99999888633223334566666655442 23689999999998543333

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2.7e-13  Score=106.15  Aligned_cols=116  Identities=14%  Similarity=0.156  Sum_probs=73.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCC-CCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~-t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (265)
                      +|.+|||||||+|++++.+.  .....++ +..........++  ..+.+|||+|..+.....       ..++  ..+|
T Consensus         6 vG~~~vGKTsLi~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~-------~~~~--~~~~   74 (164)
T d1yzqa1           6 LGEQSVGKTSLITRFMYDSF--DNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLI-------PSYI--RDSA   74 (164)
T ss_dssp             EESTTSSHHHHHHHHHHSCC--CSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGH-------HHHH--TTCS
T ss_pred             ECCCCcCHHHHHHHHHhCCC--CCccccceeeeccceeeccCCCceeeeecccCCcchhccch-------HHHh--hccc
Confidence            69999999999999998763  2222222 2233333444454  457899999975432111       1111  3889


Q ss_pred             EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCC
Q 024586           78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD  129 (265)
Q Consensus        78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~  129 (265)
                      ++++|+++++...-..-..++..+.+..+.+  .|+++|.||+|+.......
T Consensus        75 ~~ilv~d~~~~~s~~~i~~~~~~~~~~~~~~--~~iilvgnK~Dl~~~~~~~  124 (164)
T d1yzqa1          75 AAVVVYDITNVNSFQQTTKWIDDVRTERGSD--VIIMLVGNKTDLADKRQVS  124 (164)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHTTS--SEEEEEEECTTCGGGCCSC
T ss_pred             eEEEeeccccccchhhhHhhHHHHHHhcCCC--ceEEEEecccchhhhhhhh
Confidence            9999988876332233345666666555544  7899999999985444433

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=1.3e-12  Score=102.57  Aligned_cols=116  Identities=16%  Similarity=0.065  Sum_probs=71.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEE-EEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVM-VSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~-~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (265)
                      +|.+|||||||+|+|.+...  .....+++..... .....++  ..+.++||+|..+.......+       +  .++|
T Consensus        10 vG~~~vGKTsli~rl~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~-------~--~~~~   78 (167)
T d1z0ja1          10 LGDTGVGKSSIMWRFVEDSF--DPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMY-------Y--RGSA   78 (167)
T ss_dssp             ECCTTSSHHHHHHHHHHSCC--CTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHH-------H--TTCS
T ss_pred             ECCCCcCHHHHHHHHHhCCC--CcccccccccccccccccccccccceeeeecCCchhhhHHHHHH-------H--hhcc
Confidence            69999999999999998763  2222223222222 2233333  346799999985543322211       1  3789


Q ss_pred             EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCC
Q 024586           78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLD  129 (265)
Q Consensus        78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~  129 (265)
                      ++++|++++.......-..++..+.+.....  .|+++|+||+|+......+
T Consensus        79 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilvgnK~Dl~~~~~v~  128 (167)
T d1z0ja1          79 AAIIVYDITKEETFSTLKNWVRELRQHGPPS--IVVAIAGNKCDLTDVREVM  128 (167)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--SEEEEEEECTTCGGGCCSC
T ss_pred             ceEEEeeechhhhhhhHHHhhhhhhhccCCc--ceEEEecccchhccccchh
Confidence            9999988875432233344555555555444  8999999999985433333

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.39  E-value=1e-12  Score=103.58  Aligned_cols=118  Identities=16%  Similarity=0.169  Sum_probs=71.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|++++..  ....+.++..........+++.  .+.+|||+|..+..    ...   ..++  ..+|+
T Consensus        10 vG~~~vGKTsli~~~~~~~--f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~----~~~---~~~~--~~~~~   78 (168)
T d1u8za_          10 VGSGGVGKSALTLQFMYDE--FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA----AIR---DNYF--RSGEG   78 (168)
T ss_dssp             ECSTTSSHHHHHHHHHHSC--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CH----HHH---HHHH--HHCSE
T ss_pred             ECCCCcCHHHHHHHHHhCC--CCcccCCccccccccccccccccccccccccccccchh----hhh---hhcc--cccce
Confidence            6999999999999998765  2333333333333344556665  56889999985432    111   1111  26799


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCH
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY  130 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~  130 (265)
                      +++|+++++......-..+++.+.+..+. ...|+++|+||+|+......+.
T Consensus        79 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piiivgnK~Dl~~~~~v~~  129 (168)
T d1u8za_          79 FLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQVSV  129 (168)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTSCEEEEEECGGGGGGCCSCH
T ss_pred             eEEEeeccchhhhhhHHHHHHHHHHhhCC-CCCcEEEEeccccccccccccH
Confidence            99998877533223334566666655432 1278999999999854333333

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.39  E-value=1.5e-12  Score=102.83  Aligned_cols=109  Identities=17%  Similarity=0.206  Sum_probs=68.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+|||||||+|+|.+.....+.+    +...........+..+.++|+||....   .    .....++  ..+|+++
T Consensus        22 vG~~~vGKSsLi~~l~~~~~~~~~~----~~~~~~~~i~~~~~~~~i~d~~g~~~~---~----~~~~~~~--~~~~~ii   88 (176)
T d1fzqa_          22 LGLDNAGKTTLLKQLASEDISHITP----TQGFNIKSVQSQGFKLNVWDIGGQRKI---R----PYWRSYF--ENTDILI   88 (176)
T ss_dssp             EESTTSSHHHHHHHHCCSCCEEEEE----ETTEEEEEEEETTEEEEEEECSSCGGG---H----HHHHHHH--TTCSEEE
T ss_pred             ECCCCCCHHHHHHHHhcCCCCccee----eeeeeEEEeccCCeeEeEeeccccccc---h----hHHHHHh--hccceeE
Confidence            6999999999999999987533322    222334456677889999999997422   1    1122222  4789999


Q ss_pred             EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|+++++..........+..+..... ....|+++|+||+|+.
T Consensus        89 ~v~d~~d~~s~~~~~~~~~~~~~~~~-~~~~pillv~nK~Dl~  130 (176)
T d1fzqa_          89 YVIDSADRKRFEETGQELTELLEEEK-LSCVPVLIFANKQDLL  130 (176)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHTTCGG-GTTCCEEEEEECTTST
T ss_pred             Eeeccccccchhhhhhhhhhhhhhhc-cCCCeEEEEEEecccc
Confidence            99887753222222233333332222 1237999999999995

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.6e-12  Score=102.00  Aligned_cols=119  Identities=20%  Similarity=0.206  Sum_probs=77.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|++++...  .....++..........++|.  .+.++||+|..+........         ...+|+
T Consensus        10 iG~~~vGKTsLl~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~---------~~~~d~   78 (167)
T d1xtqa1          10 LGYRSVGKSSLTIQFVEGQF--VDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTY---------SIDING   78 (167)
T ss_dssp             EESTTSSHHHHHHHHHHSCC--CSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGG---------TSSCCE
T ss_pred             ECCCCcCHHHHHHHHHhCCC--CcccCcceecccceEEecCcEEEEeeecccccccccccccchh---------hhhhhh
Confidence            69999999999999987652  233333333333445566775  45789999987654433211         147899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHH
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE  131 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~  131 (265)
                      +++|+++++......-..++..+.+..+.. ..|+++|+||+|+...+..+.+
T Consensus        79 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~-~~piilvgnK~Dl~~~r~v~~~  130 (167)
T d1xtqa1          79 YILVYSVTSIKSFEVIKVIHGKLLDMVGKV-QIPIMLVGNKKDLHMERVISYE  130 (167)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHCSS-CCCEEEEEECTTCGGGCCSCHH
T ss_pred             hhhhcccchhhhhhhhhhhhhhhhhccccc-ccceeeeccccccccccchhHH
Confidence            999998886432233345666666655432 2689999999998644444443

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2e-12  Score=101.80  Aligned_cols=119  Identities=12%  Similarity=0.070  Sum_probs=69.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|++++.+.......+..+...........|.  .+.+|||||......       ....+  ...+|+
T Consensus        12 vG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~-------~~~~~--~~~~d~   82 (170)
T d2g6ba1          12 VGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRS-------VTHAY--YRDAHA   82 (170)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC---------------CC--GGGCSE
T ss_pred             ECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHH-------HHHHh--hcCCce
Confidence            6999999999999998876311111111223334445556665  568999999743221       11111  137899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCH
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY  130 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~  130 (265)
                      +++|++++.......-..+...+.+..+..  .++++|.||+|+......+.
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilv~~k~d~~~~~~v~~  132 (170)
T d2g6ba1          83 LLLLYDVTNKASFDNIQAWLTEIHEYAQHD--VALMLLGNKVDSAHERVVKR  132 (170)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECCSTTSCCCSCH
T ss_pred             eEEEecCCcccchhhhhhhhhhhhhccCCC--ceEEEEEeeechhhcccccH
Confidence            999988765321122233344444444333  78999999999865444444

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2e-12  Score=101.82  Aligned_cols=117  Identities=15%  Similarity=0.129  Sum_probs=72.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCC-CCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~-t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (265)
                      +|.+|||||||+++|++...  .....++ +...........+  ..+.+|||||........       ..++  .++|
T Consensus        12 vG~~~vGKTsLi~~l~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~-------~~~~--~~~~   80 (170)
T d1r2qa_          12 LGESAVGKSSLVLRFVKGQF--HEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLA-------PMYY--RGAQ   80 (170)
T ss_dssp             ECSTTSSHHHHHHHHHHSCC--CTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGH-------HHHH--TTCS
T ss_pred             ECCCCcCHHHHHHHHHhCCC--CcccccccccccccceeeccceEEEEEeccCCCchhhhhhH-------HHHh--hCcc
Confidence            69999999999999997653  2222222 2222223333444  467899999974332111       1122  4889


Q ss_pred             EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCH
Q 024586           78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY  130 (265)
Q Consensus        78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~  130 (265)
                      ++++|++++..........+...+.+...++  .|+++|.||+|+...+..+.
T Consensus        81 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilvgnK~Dl~~~~~v~~  131 (170)
T d1r2qa_          81 AAIVVYDITNEESFARAKNWVKELQRQASPN--IVIALSGNKADLANKRAVDF  131 (170)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCCSCH
T ss_pred             eEEEEeccchhhHHHHHHHHhhhhhhccCCC--ceEEeecccccccccccccH
Confidence            9999988775332233445666666666554  78999999999854444443

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.37  E-value=1.3e-12  Score=106.62  Aligned_cols=109  Identities=12%  Similarity=0.006  Sum_probs=76.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCc----------ccccCC------CCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHH
Q 024586            1 MGKGGVGKSSTVNSIIGEKA----------VTVSTF------QSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAI   64 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~----------~~~~~~------~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~   64 (265)
                      +|..++|||||+|+|++...          +...+.      .+.|........++++.+++++||||..+.       .
T Consensus         9 iGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df-------~   81 (204)
T d2c78a3           9 IGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY-------I   81 (204)
T ss_dssp             ECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG-------H
T ss_pred             EeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhh-------H
Confidence            59999999999999984210          001111      156666777788899999999999998532       2


Q ss_pred             HHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           65 QLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        65 ~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ..+.+.+  ..+|++|+|++.+. .+..++++.+..+....    .++++|++||+|+.
T Consensus        82 ~~~~~~~--~~aD~avlVvda~~-Gv~~qt~~~~~~~~~~g----i~~iiv~iNK~D~~  133 (204)
T d2c78a3          82 KNMITGA--AQMDGAILVVSAAD-GPMPQTREHILLARQVG----VPYIVVFMNKVDMV  133 (204)
T ss_dssp             HHHHHHH--TTCSSEEEEEETTT-CCCHHHHHHHHHHHHTT----CCCEEEEEECGGGC
T ss_pred             HHHHHHH--HHCCEEEEEEECCC-CCcHHHHHHHHHHHHcC----CCeEEEEEEecccC
Confidence            2222222  37899999976654 47888888888777653    14578889999985

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.37  E-value=1.3e-12  Score=105.67  Aligned_cols=112  Identities=15%  Similarity=0.170  Sum_probs=69.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+|||||||+|+|++++..     +.+|..........++..+.++||||......   ...+......  ...+.++
T Consensus         9 vG~~n~GKTSLln~l~~~~~~-----~~tt~~~~~~~~~~~~~~~~l~D~~g~~~~~~---~~~~~~~~~~--~~~~~~i   78 (209)
T d1nrjb_           9 AGPQNSGKTSLLTLLTTDSVR-----PTVVSQEPLSAADYDGSGVTLVDFPGHVKLRY---KLSDYLKTRA--KFVKGLI   78 (209)
T ss_dssp             ECSTTSSHHHHHHHHHHSSCC-----CBCCCSSCEEETTGGGSSCEEEECCCCGGGTH---HHHHHHHHHG--GGEEEEE
T ss_pred             ECCCCCCHHHHHHHHhCCCCC-----CeEEecceEEEEEeCCeEEEEEecccccchhh---HHHHHHHHHh--hhccccc
Confidence            699999999999999998642     23455555667778888999999999754322   2222222211  2456666


Q ss_pred             EEEecCC-cCCCHHHHHHH----HHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           81 YVDRLDV-YRVDNLDKQIT----RAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        81 ~V~~~d~-~r~~~~d~~~l----~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      +++.... ..........+    ..+......  ..|+++|+||+|+..
T Consensus        79 ~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~piiiv~NK~D~~~  125 (209)
T d1nrjb_          79 FMVDSTVDPKKLTTTAEFLVDILSITESSCEN--GIDILIACNKSELFT  125 (209)
T ss_dssp             EEEETTSCTTCCHHHHHHHHHHHHHHHHHSTT--CCCEEEEEECTTSTT
T ss_pred             eEEEEecccccHHHHHHHHHHHHHHHHHHHhc--cCCeEEEEEeecccc
Confidence            6654332 22223333333    223333333  388999999999853

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.37  E-value=1.3e-12  Score=103.17  Aligned_cols=114  Identities=17%  Similarity=0.263  Sum_probs=73.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH--hcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFL--LNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l--~~~~~d~   78 (265)
                      +|.+|||||||+|+|+|.+.+.++....++..........+...+..+|+||.....  ............  ....+++
T Consensus        11 iG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~   88 (179)
T d1egaa1          11 VGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE--KRAINRLMNKAASSSIGDVEL   88 (179)
T ss_dssp             ECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHH--HHHHHHHHTCCTTSCCCCEEE
T ss_pred             ECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCceeEeecCCCceecc--hhhhhhhhhhccccchhhcce
Confidence            599999999999999999876677666666666666777788888899999984321  111111111111  1235677


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ++++.+..  +.......+...+.+.     ..+.++|+||+|..
T Consensus        89 ~l~~~d~~--~~~~~~~~~~~~l~~~-----~~~~i~v~~k~d~~  126 (179)
T d1egaa1          89 VIFVVEGT--RWTPDDEMVLNKLREG-----KAPVILAVNKVDNV  126 (179)
T ss_dssp             EEEEEETT--CCCHHHHHHHHHHHSS-----SSCEEEEEESTTTC
T ss_pred             eEEEEecC--ccchhHHHHHHHhhhc-----cCceeeeeeeeecc
Confidence            77775443  4444444444444432     26789999999874

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.35  E-value=4.9e-12  Score=99.58  Aligned_cols=119  Identities=17%  Similarity=0.141  Sum_probs=76.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|.+++...  .....++...........++.  .+.+|||+|..........   .++      ++|+
T Consensus        10 vG~~~vGKTsll~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~---~~~------~~~~   78 (169)
T d1x1ra1          10 VGDGGVGKSALTIQFFQKIF--VPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQ---YMR------TGDG   78 (169)
T ss_dssp             ECCTTSSHHHHHHHHHHSSC--CTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHH---HHH------HCSE
T ss_pred             ECCCCcCHHHHHHHHHhCCC--CcccCcceeeccccccccccccccccccccccccccccchhh---hhh------hccE
Confidence            69999999999999998652  222233333333334455554  5689999998654433221   222      6799


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHH
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYE  131 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~  131 (265)
                      +++|+++++......-..++..+.+..+. ...|+++|+||+|+......+.+
T Consensus        79 ~llv~d~~d~~Sf~~~~~~~~~i~~~~~~-~~~p~ilvgnK~Dl~~~~~v~~e  130 (169)
T d1x1ra1          79 FLIVYSVTDKASFEHVDRFHQLILRVKDR-ESFPMILVANKVDLMHLRKVTRD  130 (169)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTS-SCCCEEEEEECTTCSTTCCSCHH
T ss_pred             EEEecccccchhhhccchhhHHHHhhccc-cCccEEEEecccchhhhceeehh
Confidence            99999887643223334567777666543 22789999999999654444443

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=8.1e-12  Score=97.84  Aligned_cols=111  Identities=21%  Similarity=0.183  Sum_probs=71.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|+|++...  .....++............+.  .+.+||++|.....    .....   ++  ..+|+
T Consensus         9 iG~~~vGKTsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~----~~~~~---~~--~~~~~   77 (166)
T d1ctqa_           9 VGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS----AMRDQ---YM--RTGEG   77 (166)
T ss_dssp             EESTTSSHHHHHHHHHHCCC--CCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGH----HHHHH---HH--HHCSE
T ss_pred             ECCCCCCHHHHHHHHHhCCC--CCccCCccceeeccceeeeceeeeeeeeeccCccccc----cchhh---hh--hcccc
Confidence            69999999999999998752  222233332233333444544  56899999984321    11111   11  26799


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +++|+++++......-..++..+.+..+.. ..|+++|+||+|+.
T Consensus        78 ~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~-~~piilv~nK~Dl~  121 (166)
T d1ctqa_          78 FLCVFAINNTKSFEDIHQYREQIKRVKDSD-DVPMVLVGNKCDLA  121 (166)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTCS-SCCEEEEEECTTCS
T ss_pred             cceeecccccccHHHHHHHHHHHHHhcCCC-CCeEEEEecccccc
Confidence            999988876443344456777777665432 27899999999985

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=3e-12  Score=100.44  Aligned_cols=117  Identities=17%  Similarity=0.093  Sum_probs=69.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCC-CccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEG-PRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t-~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (265)
                      +|.+|||||||++++++...  .....++. ..........++  ..+.+|||+|..+......       .  .-.++|
T Consensus         9 vG~~~vGKTsLi~r~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~-------~--~~~~~~   77 (167)
T d1z08a1           9 LGEGCVGKTSLVLRYCENKF--NDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGP-------I--YYRDSN   77 (167)
T ss_dssp             ECCTTSCHHHHHHHHHHCCC--CSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------C-------C--SSTTCS
T ss_pred             ECCCCcCHHHHHHHHHhCCC--CcccccccccchheeeeccCCccceeeeeccCCcceecccch-------h--hccCCc
Confidence            69999999999999998763  22222222 222233444444  4678999999754321111       1  114789


Q ss_pred             EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCH
Q 024586           78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY  130 (265)
Q Consensus        78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~  130 (265)
                      ++++|++++.......-..+++.+.......  .++++|.||+|+......+.
T Consensus        78 ~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~~~--~~~ilvgnK~Dl~~~~~v~~  128 (167)
T d1z08a1          78 GAILVYDITDEDSFQKVKNWVKELRKMLGNE--ICLCIVGNKIDLEKERHVSI  128 (167)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHHGGG--SEEEEEEECGGGGGGCCSCH
T ss_pred             eeEEEEeCCchhHHHhhhhhhhhcccccccc--cceeeeccccccccccccch
Confidence            9999988876332223344555555444333  68899999999854444443

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.33  E-value=6.9e-12  Score=98.05  Aligned_cols=109  Identities=15%  Similarity=0.123  Sum_probs=69.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+|||||||+|.|.+.+..  ... .+|..........++..+.+|||||...       .......++  ..+|+++
T Consensus         8 ~G~~~~GKTsLl~~l~~~~~~--~~~-~~T~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~--~~~~~~i   75 (164)
T d1zd9a1           8 VGLQYSGKTTFVNVIASGQFN--EDM-IPTVGFNMRKITKGNVTIKLWDIGGQPR-------FRSMWERYC--RGVSAIV   75 (164)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCC--CSC-CCCCSEEEEEEEETTEEEEEEEECCSHH-------HHTTHHHHH--TTCSEEE
T ss_pred             ECCCCCCHHHHHHHHHcCCCC--Ccc-cccceeeeeeeeeeeEEEEEeecccccc-------ccccccccc--cccchhh
Confidence            699999999999999987632  222 2344444556677889999999999521       111222222  4889999


Q ss_pred             EEEecCCcCCCHHHHHHHHHHHHh-cCcCcCCcEEEEEeCccCC
Q 024586           81 YVDRLDVYRVDNLDKQITRAITDN-FGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~~r~~~~d~~~l~~l~~~-~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|+++++..........+..+.+. ..+  ..|+++|+||.|+.
T Consensus        76 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~--~~pi~lv~nK~Dl~  117 (164)
T d1zd9a1          76 YMVDAADQEKIEASKNELHNLLDKPQLQ--GIPVLVLGNKRDLP  117 (164)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGT--TCCEEEEEECTTST
T ss_pred             cccccccccccchhhhhhhhhhhhhccc--CCcEEEEEeccccc
Confidence            998876532112223333333322 222  27999999999984

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=8.3e-12  Score=97.80  Aligned_cols=116  Identities=17%  Similarity=0.078  Sum_probs=72.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|++++...  .....++...........++.  .+.+|||+|......   .....+      .++|+
T Consensus         9 vG~~~vGKTsLi~r~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~---~~~~~~------~~a~~   77 (167)
T d1kaoa_           9 LGSGGVGKSALTVQFVTGTF--IEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFAS---MRDLYI------KNGQG   77 (167)
T ss_dssp             ECCTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHH---HHHHHH------HHCSE
T ss_pred             ECCCCcCHHHHHHHHHhCCC--CCccCCceeeeeeeeeecCcceEeeccccCCCcccccc---chHHHh------hcccc
Confidence            69999999999999998763  233333333333444555554  568899999743321   111112      26799


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRL  128 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~  128 (265)
                      +++|++++.......-..+...+...... ...|+++|+||+|+......
T Consensus        78 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~  126 (167)
T d1kaoa_          78 FILVYSLVNQQSFQDIKPMRDQIIRVKRY-EKVPVILVGNKVDLESEREV  126 (167)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECGGGGGGCCS
T ss_pred             eeeeeeecchhhhhhhhchhhhhhhhccC-CCCCEEEEEEccchhhcccc
Confidence            99998888643223334555555544332 23689999999998543333

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.1e-12  Score=103.30  Aligned_cols=109  Identities=18%  Similarity=0.166  Sum_probs=70.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|++++..  ......++............+.  .+.+|||+|..........       +  ..++|+
T Consensus        15 vG~~~vGKTsLi~r~~~~~--f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~-------~--~~~a~~   83 (185)
T d2atxa1          15 VGDGAVGKTCLLMSYANDA--FPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPL-------S--YPMTDV   83 (185)
T ss_dssp             EECTTSSHHHHHHHHHHSS--CCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGG-------G--CTTCSE
T ss_pred             ECCCCCCHHHHHHHHhhCC--CCCcCCCceeeeeeEEEeeCCceEEeecccccccchhhhhhhh-------c--ccccce
Confidence            6999999999999999865  2333344444444444455554  5689999998554322211       1  137899


Q ss_pred             EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +++|+++++.. +......+...+... ..+  .|+++|.||+|+.
T Consensus        84 ~ilv~d~t~~~Sf~~~~~~~~~~~~~~-~~~--~~~ilvgnK~Dl~  126 (185)
T d2atxa1          84 FLICFSVVNPASFQNVKEEWVPELKEY-APN--VPFLLIGTQIDLR  126 (185)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHH-STT--CCEEEEEECTTST
T ss_pred             eeeccccchHHHHHHHHHHHHHHHHhc-CCC--CCeeEeeeccccc
Confidence            99999887633 323333444555444 333  7899999999984

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=6.7e-12  Score=99.05  Aligned_cols=112  Identities=16%  Similarity=0.076  Sum_probs=73.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|++++.+..... .+..+...........+  ..+.++||+|............         ..+|+
T Consensus         9 vG~~~vGKTsli~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~---------~~~d~   78 (173)
T d2a5ja1           9 IGDTGVGKSCLLLQFTDKRFQPVH-DLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYY---------RGAAG   78 (173)
T ss_dssp             ESSTTSSHHHHHHHHHHSCCCC------CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHH---------TTCSE
T ss_pred             ECCCCcCHHHHHHHHhcCCCCCCc-ccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHh---------hccCE
Confidence            699999999999999987632222 22233333334444444  4679999999866544433221         37899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      +++|+++++......-..++..+.+..+++  .|+++|.||+|+..
T Consensus        79 ~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~--~piilv~nK~D~~~  122 (173)
T d2a5ja1          79 ALLVYDITRRETFNHLTSWLEDARQHSSSN--MVIMLIGNKSDLES  122 (173)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGG
T ss_pred             EEEEEeecChHHHHhHHHHHHHHHHhCCCC--CeEEEEecCCchhh
Confidence            999988876432233445666676666554  78999999999843

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.31  E-value=8.2e-12  Score=97.74  Aligned_cols=111  Identities=19%  Similarity=0.182  Sum_probs=66.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|++++.+. .....+..+..........++.  .+.+|||||..........+   +      ..+|+
T Consensus         8 vG~~~vGKTSli~~l~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~---~------~~~~~   77 (166)
T d1g16a_           8 IGDSGVGKSCLLVRFVEDKF-NPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAY---Y------RGAMG   77 (166)
T ss_dssp             EESTTSSHHHHHHHHHHCCC-CC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHH---H------TTEEE
T ss_pred             ECCCCcCHHHHHHHHHhCCC-CCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHH---H------hcCCE
Confidence            69999999999999998763 2221222233334445556664  56789999975443332211   1      48899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +++|+++++.+....-..+...+.......  .+++++.+|.|+.
T Consensus        78 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~~i~~~~k~d~~  120 (166)
T d1g16a_          78 IILVYDITDERTFTNIKQWFKTVNEHANDE--AQLLLVGNKSDME  120 (166)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCT
T ss_pred             EEEEEECCCccCHHHHHhhhhhhhccccCc--ceeeeecchhhhh
Confidence            999988876331122223334444444333  6789999999874

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.31  E-value=3.8e-12  Score=100.41  Aligned_cols=112  Identities=14%  Similarity=0.051  Sum_probs=64.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCC-CccEEEEeeeC---CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEG-PRPVMVSRSRA---GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTI   76 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t-~~~~~~~~~~~---g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~   76 (265)
                      +|.+|||||||+|++++....  ....++. ...........   ...+.++||||..+...       ....  ....+
T Consensus         8 vG~~~vGKSsLi~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~-------~~~~--~~~~~   76 (175)
T d1ky3a_           8 LGDSGVGKTSLMHRYVNDKYS--QQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQS-------LGVA--FYRGA   76 (175)
T ss_dssp             ECCTTSSHHHHHHHHHHSCCC--TTC---CCCSCEEEEECCSSSCCEEEEEECCC-----------------C--CSTTC
T ss_pred             ECCCCcCHHHHHHHHHcCCCC--CccCcccccceeeeeeeecCcccccceeeccCCchhhhh-------HHHH--Hhhcc
Confidence            699999999999999987632  2222221 22222222222   24678999999643221       1111  12478


Q ss_pred             cEEEEEEecCCcCCCHHHHHHHHHHHHhcCcC--cCCcEEEEEeCccCC
Q 024586           77 DVLLYVDRLDVYRVDNLDKQITRAITDNFGEQ--IWKRALIVLTHAQLS  123 (265)
Q Consensus        77 d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~--~~~~~ivV~tk~D~~  123 (265)
                      |++++|+++++......-..+++.+.+..+..  ...|+++|+||+|+.
T Consensus        77 ~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~  125 (175)
T d1ky3a_          77 DCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAE  125 (175)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSC
T ss_pred             ceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchh
Confidence            99999988775332233445666666554421  247899999999985

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.2e-11  Score=97.15  Aligned_cols=117  Identities=13%  Similarity=0.096  Sum_probs=70.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|++++..  ....+.++...........++.  .+.+|||+|.....    .....++      ++|+
T Consensus         8 vG~~~vGKTsli~r~~~~~--f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~----~~~~~~~------~~~~   75 (168)
T d2atva1           8 FGRAGVGKSALVVRFLTKR--FIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI----QREGHMR------WGEG   75 (168)
T ss_dssp             ECCTTSSHHHHHHHHHHSC--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH----HHHHHHH------HCSE
T ss_pred             ECCCCCCHHHHHHHHHhCC--CCCccCCceeccccccccccccceEEEEeecccccccc----cchhhhc------cccc
Confidence            6999999999999999865  2333333333333444455664  57899999974321    1111222      6799


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCH
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY  130 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~  130 (265)
                      +++|++++.......-..+...+..... ....|+++|+||+|+......+.
T Consensus        76 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~~r~V~~  126 (168)
T d2atva1          76 FVLVYDITDRGSFEEVLPLKNILDEIKK-PKNVTLILVGNKADLDHSRQVST  126 (168)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHT-TSCCCEEEEEECGGGGGGCCSCH
T ss_pred             ceeecccCCccchhhhhhhccccccccc-ccCcceeeeccchhhhhhccCcH
Confidence            9999888753211111223333333222 12379999999999854334443

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.5e-11  Score=97.38  Aligned_cols=112  Identities=15%  Similarity=0.057  Sum_probs=67.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|+|.+... .....+..+..........++.  .+.+|||||..+.....+       .+.  .++|+
T Consensus        13 vG~~~vGKTsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------~~~--~~~~~   82 (177)
T d1x3sa1          13 IGESGVGKSSLLLRFTDDTF-DPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTP-------SYY--RGAQG   82 (177)
T ss_dssp             ECSTTSSHHHHHHHHHHSCC-CTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHH-------HHH--TTCCE
T ss_pred             ECCCCcCHHHHHHHHHhCCC-CCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHH-------HHH--hcCCE
Confidence            69999999999999998763 1221222223333334455554  579999999755432221       111  48899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +++|+++++......-..++..+.+. ......+++++.||.|..
T Consensus        83 ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~i~~~~nk~d~~  126 (177)
T d1x3sa1          83 VILVYDVTRRDTFVKLDNWLNELETY-CTRNDIVNMLVGNKIDKE  126 (177)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHTTC-CSCSCCEEEEEEECTTSS
T ss_pred             EEEEEECCCccccccchhhhhhhccc-ccccceeeEEEeeccccc
Confidence            99998876522212223344444332 223347889999999874

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.29  E-value=2.4e-12  Score=102.37  Aligned_cols=109  Identities=12%  Similarity=0.028  Sum_probs=67.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+|||||||+|.|.+.......    +|...........+..+.+|||||..........       +  ...+|+++
T Consensus        23 vG~~~vGKTsLi~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~-------~--~~~~~~ii   89 (182)
T d1moza_          23 LGLDGAGKTTILYRLQIGEVVTTK----PTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRC-------Y--YADTAAVI   89 (182)
T ss_dssp             EEETTSSHHHHHHHTCCSEEEEEC----SSTTCCEEEEEETTEEEEEEEEC----CCTTGGG-------T--TTTEEEEE
T ss_pred             ECCCCCCHHHHHHHHhcCCCCccc----cccceEEEEEeeCCEEEEEEecccccccchhHHh-------h--hccceeEE
Confidence            599999999999999887642222    3444445566778899999999998554322211       1  13789999


Q ss_pred             EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|+++++..........+..+.+... ....|+++|+||+|+.
T Consensus        90 ~v~d~~d~~s~~~~~~~l~~~~~~~~-~~~~piliv~NK~Dl~  131 (182)
T d1moza_          90 FVVDSTDKDRMSTASKELHLMLQEEE-LQDAALLVFANKQDQP  131 (182)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHTTSST-TSSCEEEEEEECTTST
T ss_pred             EEeeecccccchhHHHHHHHHHHhhc-cCCcceEEEEEeeccc
Confidence            99887653322223333333222111 1237999999999984

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.28  E-value=1.9e-12  Score=102.35  Aligned_cols=118  Identities=14%  Similarity=0.134  Sum_probs=53.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+++|++... .....+..+..........++.  .+.+|||||.........       .+  ..++|+
T Consensus        12 vG~~~vGKTsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~-------~~--~~~~~~   81 (173)
T d2fu5c1          12 IGDSGVGKTCVLFRFSEDAF-NSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITT-------AY--YRGAMG   81 (173)
T ss_dssp             ECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CC-------TT--TTTCSE
T ss_pred             ECCCCcCHHHHHHHHHhCCC-CCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHH-------Hh--ccCCCE
Confidence            69999999999999998653 1111111223344445566665  567899999743322111       11  248899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCH
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY  130 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~  130 (265)
                      +++|++++.......-..+.+.+......+  .++++|.||.|.........
T Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilv~~k~D~~~~~~~~~  131 (173)
T d2fu5c1          82 IMLVYDITNEKSFDNIRNWIRNIEEHASAD--VEKMILGNKCDVNDKRQVSK  131 (173)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEEC--CCSCCCSCH
T ss_pred             EEEEEECCChhhHHHHHHHHHHhhhhccCC--ceEEEEEecccchhhcccHH
Confidence            999988775321122334445555554444  78999999999865444333

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=2.4e-12  Score=102.01  Aligned_cols=109  Identities=17%  Similarity=0.166  Sum_probs=69.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||++++.+...  .....++...........++.  .+.+|||+|.........       .+  -.++|+
T Consensus         8 vG~~~vGKTsLi~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~-------~~--~~~~~~   76 (177)
T d1kmqa_           8 VGDGACGKTCLLIVNSKDQF--PEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRP-------LS--YPDTDV   76 (177)
T ss_dssp             EESTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGG-------GG--CTTCSE
T ss_pred             ECCCCcCHHHHHHHHHhCCC--CCCcCCceeeeccccccccccceeeeccccCccchhcccch-------hh--cccchh
Confidence            69999999999999998763  222223322222333444444  579999999754332221       11  147899


Q ss_pred             EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +++|++++... +......+.+.+... +++  .|+++|.||+|+.
T Consensus        77 ~ilv~d~~~~~Sf~~~~~~~~~~~~~~-~~~--~piilvgnK~Dl~  119 (177)
T d1kmqa_          77 ILMCFSIDSPDSLENIPEKWTPEVKHF-CPN--VPIILVGNKKDLR  119 (177)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHH-STT--SCEEEEEECGGGT
T ss_pred             hhhhcccchhHHHHHHHHHHHHHHHHh-CCC--CceEEeeeccccc
Confidence            99999887633 333333445555544 333  7999999999984

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=2.5e-11  Score=95.72  Aligned_cols=121  Identities=15%  Similarity=0.053  Sum_probs=71.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|.+.+......+..+.++.........+++.  .+.+||+||...    .++.   +... ....+|+
T Consensus         9 vG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g----~e~~---~~~~-~~~~~~~   80 (172)
T d2g3ya1           9 IGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKG----ENEW---LHDH-CMQVGDA   80 (172)
T ss_dssp             ECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTH----HHHH---HHHC-CCCCCSE
T ss_pred             ECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccc----cccc---cccc-cccccce
Confidence            6999999999999999876433333333333444445556665  458899986521    1111   1111 2258899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCH
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY  130 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~  130 (265)
                      +++|++++.......-..+...+....+. ...|+++|+||+|+...+..+.
T Consensus        81 ~ilvfd~t~~~s~~~~~~~~~~i~~~~~~-~~~piilvgnK~Dl~~~~~v~~  131 (172)
T d2g3ya1          81 YLIVYSITDRASFEKASELRIQLRRARQT-EDIPIILVGNKSDLVRCREVSV  131 (172)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHTSGGG-TTSCEEEEEECTTCGGGCCSCH
T ss_pred             eeeeecccccchhhhhhhhhhhhhhcccc-CCceEEEEeccccccccccccH
Confidence            99998887532212223444445443321 2379999999999854444443

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.27  E-value=1e-11  Score=98.89  Aligned_cols=112  Identities=14%  Similarity=0.080  Sum_probs=68.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCC-CccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEG-PRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t-~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (265)
                      +|.+|||||||+|++++.+.  .....++. ...........+  ..+.++||||..+........         ...+|
T Consensus         8 vG~~~vGKSSLi~~l~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~---------~~~~~   76 (184)
T d1vg8a_           8 LGDSGVGKTSLMNQYVNKKF--SNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAF---------YRGAD   76 (184)
T ss_dssp             ECCTTSSHHHHHHHHHHSCC--CSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGG---------GTTCS
T ss_pred             ECCCCcCHHHHHHHHHhCCC--CCCcCCccceeeeeeeeeeCCceEEEEeeecCCccccccccccc---------ccCcc
Confidence            69999999999999998763  22222221 112222333333  467899999975543332211         13789


Q ss_pred             EEEEEEecCCcCCCHHHHHHHHHHHHhcCcC--cCCcEEEEEeCccCC
Q 024586           78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQ--IWKRALIVLTHAQLS  123 (265)
Q Consensus        78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~--~~~~~ivV~tk~D~~  123 (265)
                      ++++|+++++......-..+++.+.......  ...|+++|+||+|+.
T Consensus        77 ~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~  124 (184)
T d1vg8a_          77 CCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE  124 (184)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred             EEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeeccc
Confidence            9999988764222222335565565544321  126899999999985

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.26  E-value=6.8e-12  Score=101.16  Aligned_cols=159  Identities=15%  Similarity=0.111  Sum_probs=87.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCccccc--CCCCCCCccEEE-----------------------EeeeCCeEEEEEeCCCCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVS--TFQSEGPRPVMV-----------------------SRSRAGFTLNIVDTPGLIE   55 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~--~~~~~t~~~~~~-----------------------~~~~~g~~v~iiDTPG~~~   55 (265)
                      +|..++|||||+|+|+|.......  ...+.|......                       .....+..++++||||.  
T Consensus        11 iGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh--   88 (195)
T d1kk1a3          11 VGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGH--   88 (195)
T ss_dssp             ECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEECSSH--
T ss_pred             EeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEeeeccchh--
Confidence            588999999999999985321111  111122111110                       11122356899999995  


Q ss_pred             CCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHHHHHh
Q 024586           56 GGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFCS  135 (265)
Q Consensus        56 ~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~~~~~  135 (265)
                           ..+...+.+.+  ..+|++++|++...........+.+..+.... .   +++++++||+|+.+     ..+...
T Consensus        89 -----~~f~~~~~~~~--~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~-~---~~iiv~inK~D~~d-----~~~~~~  152 (195)
T d1kk1a3          89 -----EALMTTMLAGA--SLMDGAILVIAANEPCPRPQTREHLMALQIIG-Q---KNIIIAQNKIELVD-----KEKALE  152 (195)
T ss_dssp             -----HHHHHHHHHCG--GGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT-C---CCEEEEEECGGGSC-----HHHHHH
T ss_pred             -----hhhhHHhhccc--ccccccccccchhhhhhhhhhHHHHHHHHHhc-C---ccceeeeecccchh-----hHHHHH
Confidence                 24444444433  36799999976664333444555555554432 2   56889999999842     221111


Q ss_pred             hchHHHHHHHhccccccccccccCCchhHhhhcCCcCCCCccccccCCCCCCChHHHHHHHHHHhh
Q 024586          136 KRSEALLKFVSPSTWMKKKDIQGSFVPVVLVENSGRCAKNENDEKVLPNGTAWIPNLVKTITEVVL  201 (265)
Q Consensus       136 ~~~~~l~~~i~~~~~~~~~~~~~~~ip~~~~~n~~~~~~~~~~~~~lp~~~~W~~~L~~~i~~~~~  201 (265)
                       .-..+.+++.....        ..+|++.+++    .+++.           +..|++.+.+.+|
T Consensus       153 -~~~~~~~~~~~~~~--------~~~~iIpiSA----~~G~n-----------i~~Ll~~I~~~iP  194 (195)
T d1kk1a3         153 -NYRQIKEFIEGTVA--------ENAPIIPISA----LHGAN-----------IDVLVKAIEDFIP  194 (195)
T ss_dssp             -HHHHHHHHHTTSTT--------TTCCEEECBT----TTTBS-----------HHHHHHHHHHHSC
T ss_pred             -HHHHHHHHhccccC--------CCCeEEEEEC----CCCCC-----------HHHHHHHHHHHCc
Confidence             12334444443211        1245544442    33322           8999999988765

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=2.2e-12  Score=101.79  Aligned_cols=109  Identities=12%  Similarity=0.099  Sum_probs=66.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCC-ccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGP-RPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~-~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (265)
                      +|.+|||||||+|++++...  .....++.. .........++  ..+.+|||||.........       .+  ..++|
T Consensus         9 vG~~~vGKTsli~~~~~~~f--~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~-------~~--~~~~~   77 (170)
T d1i2ma_           9 VGDGGTGKTTFVKRHLTGEF--EKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRD-------GY--YIQAQ   77 (170)
T ss_dssp             EECTTSSHHHHHHTTC-------CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGG-------GG--TTTCC
T ss_pred             ECCCCcCHHHHHHHHHhCCC--Ccccccceeccccccccccccccccccccccccccccceecc-------hh--ccccc
Confidence            69999999999999998762  222222211 11222333444  5789999999643222111       11  14789


Q ss_pred             EEEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           78 VLLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        78 ~iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      ++++|+++++.. +... ..++..+.+...   ..|+++|+||+|+..
T Consensus        78 ~~ilv~d~~~~~Sf~~~-~~~~~~~~~~~~---~~piilvgnK~Dl~~  121 (170)
T d1i2ma_          78 CAIIMFDVTSRVTYKNV-PNWHRDLVRVCE---NIPIVLCGNKVDIKD  121 (170)
T ss_dssp             EEEEEEETTSGGGGTTH-HHHHHHHHHHHC---SCCEEEEEECCCCSC
T ss_pred             chhhccccccccccchh-HHHHHHHhhccC---CCceeeecchhhhhh
Confidence            999999888644 4443 456666655543   289999999999853

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.26  E-value=5.7e-12  Score=99.41  Aligned_cols=108  Identities=17%  Similarity=0.162  Sum_probs=69.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+|||||||+|++.+......    ..|..............+.++||||.....       .....+  ...+|+++
T Consensus        18 vG~~~vGKTSli~rl~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~--~~~~~~ii   84 (173)
T d1e0sa_          18 LGLDAAGKTTILYKLKLGQSVTT----IPTVGFNVETVTYKNVKFNVWDVGGQDKIR-------PLWRHY--YTGTQGLI   84 (173)
T ss_dssp             EEETTSSHHHHHHHTTCCCCEEE----EEETTEEEEEEEETTEEEEEEEESCCGGGH-------HHHGGG--TTTCCEEE
T ss_pred             ECCCCCCHHHHHHHHhcCCCCCc----cceeeeeEEEeeccceeeEEecCCCcchhh-------hHHHhh--hcccceEE
Confidence            59999999999999998763221    234444455666778899999999974321       111112  25889999


Q ss_pred             EEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           81 YVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|++++... +......+...+......  ..|+++|+||+|+.
T Consensus        85 ~v~D~s~~~~~~~~~~~l~~~~~~~~~~--~~piiiv~NK~Dl~  126 (173)
T d1e0sa_          85 FVVDCADRDRIDEARQELHRIINDREMR--DAIILIFANKQDLP  126 (173)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTSGGGT--TCEEEEEEECTTST
T ss_pred             EEEecccchhHHHHHHHHHHHhhhcccc--cceeeeeeeccccc
Confidence            998877532 222222222323222222  38999999999984

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.26  E-value=2.4e-11  Score=98.39  Aligned_cols=119  Identities=14%  Similarity=0.216  Sum_probs=67.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEee---eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS---RAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~---~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (265)
                      +|.+|||||||+|+|++......  .+  |.........   ..+..+.++||||...      .....+..++  ..+|
T Consensus         6 vG~~~~GKTsLl~~l~~~~~~~~--~~--t~~~~~~~~~~~~~~~~~~~~~d~~g~~~------~~~~~~~~~~--~~~~   73 (207)
T d2fh5b1           6 VGLCDSGKTLLFVRLLTGQYRDT--QT--SITDSSAIYKVNNNRGNSLTLIDLPGHES------LRFQLLDRFK--SSAR   73 (207)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCCCB--CC--CCSCEEEEEECSSTTCCEEEEEECCCCHH------HHHHHHHHHG--GGEE
T ss_pred             ECCCCCCHHHHHHHHHcCCCCcc--cC--CeeEEEEEEEEeeeeeeeeeeeecccccc------ccchhhhhhh--hhcc
Confidence            69999999999999998764332  22  2222222222   3467899999999621      1111222222  3778


Q ss_pred             EEEEEEecCCcC--CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHHHH
Q 024586           78 VLLYVDRLDVYR--VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVF  133 (265)
Q Consensus        78 ~iL~V~~~d~~r--~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~~~  133 (265)
                      .+++|++..+..  +.+....+...+..........|++||+||+|+.  ...+.++.
T Consensus        74 ~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~--~a~~~~~i  129 (207)
T d2fh5b1          74 AVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIA--MAKSAKLI  129 (207)
T ss_dssp             EEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTST--TCCCHHHH
T ss_pred             ccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccC--CCCCHHHH
Confidence            999997655321  1111122223333222222236899999999994  34444443

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=2.1e-11  Score=95.54  Aligned_cols=114  Identities=17%  Similarity=0.086  Sum_probs=71.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||++++++...  .....++...........++  ..+.+|||+|.........   ..++      ++|+
T Consensus         9 vG~~~vGKTsli~r~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~---~~~~------~~~~   77 (167)
T d1c1ya_           9 LGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRD---LYMK------NGQG   77 (167)
T ss_dssp             ECSTTSSHHHHHHHHHHCCC--CCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHH---HHHH------HCSE
T ss_pred             ECCCCCCHHHHHHHHHcCCC--CCccCCccccccceeEEeeeeEEEeccccccCccccccccc---cccc------ccce
Confidence            69999999999999998763  23333332222223333333  4679999999865432211   1122      6799


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPD  126 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~  126 (265)
                      +++|+++++....+.-..+++.+.+..+. ...|+++|.||+|+....
T Consensus        78 ~ilv~d~~~~~sf~~~~~~~~~~~~~~~~-~~~p~ilvgnK~Dl~~~~  124 (167)
T d1c1ya_          78 FALVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCDLEDER  124 (167)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCC-SCCCEEEEEECTTCGGGC
T ss_pred             eEEeeeccchhhhHhHHHHHHHHHHhcCC-CCCeEEEEEEecCccccc
Confidence            99999887643223334566666654432 126899999999985433

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=8.1e-12  Score=98.51  Aligned_cols=111  Identities=16%  Similarity=0.108  Sum_probs=68.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCC-CCccEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~-t~~~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (265)
                      +|.+|||||||+|++.+.+.  .....++ +..........++  ..+.+|||||....       ......+  ...+|
T Consensus        11 vG~~~vGKTsll~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~--~~~~~   79 (174)
T d2bmea1          11 IGNAGTGKSCLLHQFIEKKF--KDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF-------RSVTRSY--YRGAA   79 (174)
T ss_dssp             EESTTSSHHHHHHHHHHSSC--CTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGG-------HHHHHTT--STTCS
T ss_pred             ECCCCcCHHHHHHHHHhCCC--CcccccccccceeeEEEEecCcceeEEEEECCCchhh-------hhhHHHH--hhhCC
Confidence            69999999999999997653  2222222 1111222233333  46789999996321       1111222  25889


Q ss_pred             EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      ++++|++++.......-..++..+....+.+  .|+++|.||+|+..
T Consensus        80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piivv~nK~D~~~  124 (174)
T d2bmea1          80 GALLVYDITSRETYNALTNWLTDARMLASQN--IVIILCGNKKDLDA  124 (174)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGG
T ss_pred             EEEEEEecccchhHHHHhhhhcccccccCCc--eEEEEEEecccccc
Confidence            9999988775332233345555666655544  89999999999843

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=8.1e-12  Score=99.47  Aligned_cols=109  Identities=17%  Similarity=0.120  Sum_probs=69.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|++++...  .....++...........++.  .+.+||++|........+       .+  -.++|+
T Consensus        11 iG~~~vGKTsli~~~~~~~f--~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~-------~~--~~~~~~   79 (183)
T d1mh1a_          11 VGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRP-------LS--YPQTDV   79 (183)
T ss_dssp             ECSTTSSHHHHHHHHHHSSC--CSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGG-------GG--CTTCSE
T ss_pred             ECCCCCCHHHHHHHHHhCCC--CcccccceeeceeeeeeccCcceEEEeecccccccchhhhh-------hc--ccccce
Confidence            69999999999999998762  333334433333334445554  568999999744322211       11  147899


Q ss_pred             EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +++|++++... +......+...+.... .+  .|+++|+||+|+.
T Consensus        80 ~ilv~d~~~~~sf~~i~~~~~~~~~~~~-~~--~piilvgnK~Dl~  122 (183)
T d1mh1a_          80 SLICFSLVSPASFENVRAKWYPEVRHHC-PN--TPIILVGTKLDLR  122 (183)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHS-TT--SCEEEEEECHHHH
T ss_pred             eeeeeccchHHHHHHHHHHHHHHHHHhC-CC--CcEEEEeecccch
Confidence            99998887533 3333334555555443 32  7999999999984

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.6e-11  Score=97.86  Aligned_cols=115  Identities=16%  Similarity=0.124  Sum_probs=63.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCC-CCccEEEEeeeC------------CeEEEEEeCCCCCCCCCCcHHHHHHH
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSE-GPRPVMVSRSRA------------GFTLNIVDTPGLIEGGYVNYHAIQLI   67 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~-t~~~~~~~~~~~------------g~~v~iiDTPG~~~~~~~~~~~~~~i   67 (265)
                      +|.+|||||||+|+|++....  ....++ +..........+            ...+.++||||..       +.....
T Consensus        11 vG~~~vGKTsLi~~l~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e-------~~~~~~   81 (186)
T d2f7sa1          11 LGDSGVGKTTFLYRYTDNKFN--PKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE-------RFRSLT   81 (186)
T ss_dssp             ESCTTSSHHHHHHHHHCSCCC--CEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH-------HHHHHH
T ss_pred             ECCCCcCHHHHHHHHhcCCCC--CccCCcccceeeEEEEEEecccccccccccceEEeccccCCcch-------hhHHHH
Confidence            699999999999999987631  111111 111111111111            2467999999962       222222


Q ss_pred             HHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCc--CcCCcEEEEEeCccCCCCCCCC
Q 024586           68 KRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGE--QIWKRALIVLTHAQLSLPDRLD  129 (265)
Q Consensus        68 ~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~--~~~~~~ivV~tk~D~~~~~~~~  129 (265)
                      ..++  .++|++++|++++...   ....+...+......  ....|+++|+||+|+......+
T Consensus        82 ~~~~--~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~  140 (186)
T d2f7sa1          82 TAFF--RDAMGFLLMFDLTSQQ---SFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVN  140 (186)
T ss_dssp             HHHH--TTCCEEEEEEETTCHH---HHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSC
T ss_pred             HHHH--hcCCEEEEEEeccccc---cceeeeeccchhhhhccCCCceEEEEeeeccchhhhcch
Confidence            2222  4889999998876421   111222222222211  1236789999999985433333

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=9.1e-12  Score=99.92  Aligned_cols=109  Identities=23%  Similarity=0.196  Sum_probs=69.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||++++++...  .....++...........++.  .+.+|||+|..+......       .+  -.++|+
T Consensus         9 lG~~~vGKTSli~r~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~-------~~--~~~~~~   77 (191)
T d2ngra_           9 VGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRP-------LS--YPQTDV   77 (191)
T ss_dssp             EESTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGG-------GG--CTTCSE
T ss_pred             ECCCCcCHHHHHHHHHhCCC--CCCcCCceeeecceeEeeCCceeeeeccccccchhhhhhhh-------hc--ccccce
Confidence            69999999999999998762  333333333333344445554  678999999854332211       11  147899


Q ss_pred             EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +++|++++... +......+.+.+... ..+  .|+++|.||+|+.
T Consensus        78 ~ilv~d~~~~~Sf~~~~~~~~~~~~~~-~~~--~~i~lvgnK~Dl~  120 (191)
T d2ngra_          78 FLVCFSVVSPSSFENVKEKWVPEITHH-CPK--TPFLLVGTQIDLR  120 (191)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHH-CTT--CCEEEEEECGGGG
T ss_pred             eecccccchHHHHHHHHHHHHHHHhhc-CCC--CceEEEecccccc
Confidence            99999888633 333333344444443 333  7899999999984

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.21  E-value=7.8e-12  Score=99.42  Aligned_cols=109  Identities=17%  Similarity=0.124  Sum_probs=68.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+++++....  .....++...........++.  .+.+|||+|.........       .  .-.++|+
T Consensus         8 iG~~~vGKTsli~r~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~-------~--~~~~~~~   76 (179)
T d1m7ba_           8 VGDSQCGKTALLHVFAKDCF--PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRP-------L--SYPDSDA   76 (179)
T ss_dssp             EESTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGG-------G--GCTTCSE
T ss_pred             ECCCCcCHHHHHHHHHhCCC--CCccCCceeecccccccccceEEeecccccccccccccccc-------c--hhhhhhh
Confidence            69999999999999998763  223333322333334445554  568999999743322211       1  1148899


Q ss_pred             EEEEEecCCcC-CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYR-VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r-~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +++|+++++.. |......+...+.. .+.+  .|+++|+||+|+.
T Consensus        77 ~ilv~d~~~~~Sf~~~~~~~~~~~~~-~~~~--~~iilVgnK~Dl~  119 (179)
T d1m7ba_          77 VLICFDISRPETLDSVLKKWKGEIQE-FCPN--TKMLLVGCKSDLR  119 (179)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHH-HCTT--CEEEEEEECGGGG
T ss_pred             hheeeecccCCCHHHHHHHHHHHHhc-cCCc--ceEEEEEeccccc
Confidence            99999887633 32323334444443 3333  7999999999984

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=9.3e-11  Score=92.87  Aligned_cols=106  Identities=15%  Similarity=0.123  Sum_probs=68.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|++++...   ....+++.........++|.  .+.+|||+|...     ..   .++      ++|+
T Consensus        11 lG~~~vGKTsLi~~~~~~~f---~~~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~-----~~---~~~------~ad~   73 (175)
T d2bmja1          11 LGDARSGKSSLIHRFLTGSY---QVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AK---FSG------WADA   73 (175)
T ss_dssp             ECCTTTTHHHHHHHHHHSCC---CCCCCSSCEEEEEEEEETTEEEEEEEEECSSCCC-----HH---HHH------HCSE
T ss_pred             ECCCCCCHHHHHHHHHhCCC---CCcCCccceeEEEEeecCceEEEEEEeecccccc-----cc---ccc------ccce
Confidence            69999999999999998863   22233334444445567775  478999999642     11   222      6799


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcC-cCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQ-IWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~-~~~~~ivV~tk~D~~  123 (265)
                      +|+|+++++......-..+.+.+....... -..|+++|.||.|+.
T Consensus        74 ~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d  119 (175)
T d2bmja1          74 VIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS  119 (175)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCC
T ss_pred             eEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcc
Confidence            999999886432222344556665544322 235899999999874

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.21  E-value=9.4e-11  Score=100.28  Aligned_cols=118  Identities=19%  Similarity=0.278  Sum_probs=67.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeee----------------------------------------
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR----------------------------------------   40 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~----------------------------------------   40 (265)
                      +|..++|||||+|+|+|.++.+++.. ++|..+.......                                        
T Consensus        32 vG~~SsGKSsliNaLlg~~~lP~~~~-~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (299)
T d2akab1          32 VGGQSAGKSSVLENFVGRDFLPRGSG-IVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGI  110 (299)
T ss_dssp             EEBTTSCHHHHHHHHHTSCCSCCCSS-CSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCSSTTCC
T ss_pred             EcCCCCCHHHHHHHHhCCCcCCCCCC-ccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhCCCcCc
Confidence            58999999999999999986555543 3444333211100                                        


Q ss_pred             ------------CCeEEEEEeCCCCCCCCCCc------HHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHH
Q 024586           41 ------------AGFTLNIVDTPGLIEGGYVN------YHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAIT  102 (265)
Q Consensus        41 ------------~g~~v~iiDTPG~~~~~~~~------~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~  102 (265)
                                  .-..++++||||+......+      ..+...+..++.. .-+++++|.+... .++..+  ....+.
T Consensus       111 ~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~-~~~~il~v~~a~~-~~~~~~--~~~~~~  186 (299)
T d2akab1         111 SPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTK-ENCLILAVSPANS-DLANSD--ALKIAK  186 (299)
T ss_dssp             CSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTS-TTEEEEEEEESSS-CGGGCH--HHHHHH
T ss_pred             CCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcC-ccceeeeeccccc-chhhhH--HHHHHH
Confidence                        01137899999998653222      1233344444432 3356666654432 233332  222233


Q ss_pred             HhcCcCcCCcEEEEEeCccCCCC
Q 024586          103 DNFGEQIWKRALIVLTHAQLSLP  125 (265)
Q Consensus       103 ~~~g~~~~~~~ivV~tk~D~~~~  125 (265)
                      +..+..  .++++|+||+|..+.
T Consensus       187 ~~~~~~--~r~i~Vltk~D~~~~  207 (299)
T d2akab1         187 EVDPQG--QRTIGVITKLDLMDE  207 (299)
T ss_dssp             HHCTTC--SSEEEEEECGGGSCT
T ss_pred             HhCcCC--CceeeEEeccccccc
Confidence            332222  789999999998754

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.20  E-value=1.1e-10  Score=91.50  Aligned_cols=109  Identities=9%  Similarity=-0.007  Sum_probs=65.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+|||||||+|+|.+.+........    ..........+.++.++|++|..........   .+      ...|+++
T Consensus        21 vG~~~~GKSsLi~rl~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~---~~------~~~~~~i   87 (177)
T d1zj6a1          21 VGLDNAGKTTILYQFSMNEVVHTSPTI----GSNVEEIVINNTRFLMWDIGGQESLRSSWNT---YY------TNTEFVI   87 (177)
T ss_dssp             EESTTSSHHHHHHHHHTTSCEEEECCS----CSSCEEEEETTEEEEEEECCC----CGGGHH---HH------TTCCEEE
T ss_pred             ECCCCCCHHHHHHHHhcCCCCcccccc----ceeEEEEeecceEEEEeccccccccccchhh---hh------ccceeee
Confidence            699999999999999998865443322    2223445567789999999987554333221   11      3779999


Q ss_pred             EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|++.++................. ......|+++|+||+|+.
T Consensus        88 ~v~d~~d~~~~~~~~~~~~~~~~~-~~~~~~p~iiv~nK~Dl~  129 (177)
T d1zj6a1          88 VVVDSTDRERISVTREELYKMLAH-EDLRKAGLLIFANKQDVK  129 (177)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTS-GGGTTCEEEEEEECTTST
T ss_pred             eecccccccchhhhhhhhhhhhhc-ccccceEEEEEEEccccc
Confidence            997766433222222222222211 112237999999999984

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.20  E-value=4.8e-11  Score=92.96  Aligned_cols=120  Identities=9%  Similarity=0.068  Sum_probs=71.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSR--AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~--~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~   78 (265)
                      +|.+|||||||+|++++........ +..+..........  ....+.++|++|.......      ....++  .++|+
T Consensus         8 iG~~~vGKTsLl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~--~~~d~   78 (165)
T d1z06a1           8 IGDSNVGKTCLTYRFCAGRFPDRTE-ATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKS------MVQHYY--RNVHA   78 (165)
T ss_dssp             ECCTTSSHHHHHHHHHHSSCCSSCC-CCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTT------THHHHH--TTCCE
T ss_pred             ECCCCcCHHHHHHHHHhCCCCCccC-cccccccceeeeeeeccceEEEEEeccCchhhccc------cceeee--cCCCc
Confidence            6999999999999999776322221 11112222223333  3456789999996321111      111122  48899


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCH
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDY  130 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~  130 (265)
                      +++|+++++......-..++..+.+.... ...|+++|+||+|+......+.
T Consensus        79 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~pi~lvgnK~Dl~~~~~v~~  129 (165)
T d1z06a1          79 VVFVYDMTNMASFHSLPAWIEECKQHLLA-NDIPRILVGNKCDLRSAIQVPT  129 (165)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHCCC-SCCCEEEEEECTTCGGGCCSCH
T ss_pred             eEEEEEeehhhhhhhhhhhhHHHHhhccC-CCCeEEEEeccccchhccchhH
Confidence            99999887633222224566666554432 1379999999999864444443

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1e-10  Score=92.08  Aligned_cols=112  Identities=19%  Similarity=0.099  Sum_probs=67.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCcc-EEEEeeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRP-VMVSRSRAGF--TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~-~~~~~~~~g~--~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (265)
                      +|.+|||||||+|.+++...  ......++... .......++.  .+.++||+|..+..        ... ......+|
T Consensus        12 vG~~~vGKSSli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~--------~~~-~~~~~~~~   80 (174)
T d1wmsa_          12 LGDGGVGKSSLMNRYVTNKF--DTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFR--------SLR-TPFYRGSD   80 (174)
T ss_dssp             ECCTTSSHHHHHHHHHHSCC--CC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGH--------HHH-GGGGTTCS
T ss_pred             ECCCCCCHHHHHHHHHhCCC--CCccccceeeeeeeeeeeecCceeeEeeecccCcceeh--------hhh-hhhhhccc
Confidence            69999999999999998652  22222222222 2233444554  55899999974321        111 11224789


Q ss_pred             EEEEEEecCCcCCCHHHHHHHHHHHHhcCc--CcCCcEEEEEeCccCC
Q 024586           78 VLLYVDRLDVYRVDNLDKQITRAITDNFGE--QIWKRALIVLTHAQLS  123 (265)
Q Consensus        78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~--~~~~~~ivV~tk~D~~  123 (265)
                      ++++|++.+..........+++.+.+....  .-..|+++|+||+|+.
T Consensus        81 ~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~  128 (174)
T d1wmsa_          81 CCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS  128 (174)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred             eEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchh
Confidence            999998877533223344566666655432  1236899999999985

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.20  E-value=7.1e-11  Score=90.76  Aligned_cols=109  Identities=11%  Similarity=0.046  Sum_probs=66.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+|||||||+|+|.+.+.....    .+..............+.++|+||.....    ..   ...+.  ...++++
T Consensus         6 vG~~~vGKSsLi~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~d~~g~~~~~----~~---~~~~~--~~~~~~i   72 (160)
T d1r8sa_           6 VGLDAAGKTTILYKLKLGEIVTTI----PTIGFNVETVEYKNISFTVWDVGGQDKIR----PL---WRHYF--QNTQGLI   72 (160)
T ss_dssp             ECSTTSSHHHHHHHHHHHCSSCCC----CCSSCCEEEEECSSCEEEEEECCCCGGGH----HH---HHHHT--TTCSEEE
T ss_pred             ECCCCCCHHHHHHHHhcCCCCccc----cceeeEEEEEeeeeEEEEEecCCCcccch----hh---hhhhh--ccceeEE
Confidence            699999999999999987642221    12223334555677889999999974321    11   11111  4789999


Q ss_pred             EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ++++.++..........+..+..... ....++++|.||.|+.
T Consensus        73 ~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~v~~k~d~~  114 (160)
T d1r8sa_          73 FVVDSNDRERVNEAREELMRMLAEDE-LRDAVLLVFANKQDLP  114 (160)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTST
T ss_pred             EEEEecChHHHHHHHHHHHHHHHhhc-ccCceEEEEeeccccc
Confidence            99877653211222222222222111 1237899999999984

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.17  E-value=1.8e-10  Score=90.63  Aligned_cols=117  Identities=19%  Similarity=0.205  Sum_probs=62.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHH-HHHH-hcCCccE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLI-KRFL-LNKTIDV   78 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i-~~~l-~~~~~d~   78 (265)
                      +|.+|||||||+|+|++.+........+++...........+......++++............... .... .....+.
T Consensus        22 vG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (188)
T d1puia_          22 AGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQG  101 (188)
T ss_dssp             EECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEE
T ss_pred             ECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhhhhhhhhhhhheeE
Confidence            6999999999999999987655554445555555555556666666666666554433332222211 1111 1223444


Q ss_pred             EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           79 LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        79 iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ++++..... .....+...+..+....     .+.++++||+|+.
T Consensus       102 ~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~v~~k~D~~  140 (188)
T d1puia_         102 LVVLMDIRH-PLKDLDQQMIEWAVDSN-----IAVLVLLTKADKL  140 (188)
T ss_dssp             EEEEEETTS-CCCHHHHHHHHHHHHTT-----CCEEEEEECGGGS
T ss_pred             EEEeecccc-cchhHHHHHHHHhhhcc-----ccccchhhhhhcc
Confidence            555544432 45666777777776654     7899999999985

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.17  E-value=3.1e-11  Score=94.66  Aligned_cols=110  Identities=13%  Similarity=0.077  Sum_probs=68.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCc-cEEEEeeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPR-PVMVSRSRAG--FTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~-~~~~~~~~~g--~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d   77 (265)
                      +|.+|||||||++++++.+.  .....++... ........++  ..+.+|||+|..+.....       ..++  .++|
T Consensus         9 vG~~~vGKTsLi~~~~~~~f--~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~-------~~~~--~~~~   77 (170)
T d1ek0a_           9 LGEAAVGKSSIVLRFVSNDF--AENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLA-------PMYY--RNAQ   77 (170)
T ss_dssp             ECSTTSSHHHHHHHHHHSCC--CTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGH-------HHHH--TTCS
T ss_pred             ECCCCcCHHHHHHHHHhCCC--CccccccccceeeccccccccccccccccccCCchhHHHHH-------HHHH--hccc
Confidence            69999999999999998763  2222222221 1223444555  467999999974332111       1111  4889


Q ss_pred             EEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           78 VLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        78 ~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ++++|++++..........+...+......  ..++++|.||+|+.
T Consensus        78 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~~~v~nk~d~~  121 (170)
T d1ek0a_          78 AALVVYDVTKPQSFIKARHWVKELHEQASK--DIIIALVGNKIDML  121 (170)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECGGGG
T ss_pred             eEEEEEeCCcccchhhhhhhhhhhcccccc--ccceeeeecccccc
Confidence            999998887633223333444444444433  37899999999974

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.15  E-value=1.6e-10  Score=93.79  Aligned_cols=68  Identities=15%  Similarity=0.105  Sum_probs=44.8

Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCC-CHHHHHHHHHHHHhcCcCcCCcEEEEEeCc
Q 024586           42 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRV-DNLDKQITRAITDNFGEQIWKRALIVLTHA  120 (265)
Q Consensus        42 g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~-~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~  120 (265)
                      ++.++++||||..       ++...+.+.+  ..+|++|+|++... .+ ....++.+..+... |.   +++||++||+
T Consensus        85 ~r~~~iiD~PGH~-------df~~~~~~~~--~~ad~ailvVda~~-gi~~~~t~e~~~~~~~~-~i---~~iIV~vNK~  150 (205)
T d2qn6a3          85 LRRISFIDAPGHE-------VLMATMLSGA--ALMDGAILVVAANE-PFPQPQTREHFVALGII-GV---KNLIIVQNKV  150 (205)
T ss_dssp             EEEEEEEECSCHH-------HHHHHHHHTS--SCCSEEEEEEETTS-CSSCHHHHHHHHHHHHT-TC---CCEEEEEECG
T ss_pred             eEEEEEeccchHH-------HHHhhhhcce--eccccccccccccc-cccchhHHHHHHHHHHc-CC---ceeeeccccC
Confidence            3578999999973       3434443332  46899999966553 24 44555566555443 32   5889999999


Q ss_pred             cCC
Q 024586          121 QLS  123 (265)
Q Consensus       121 D~~  123 (265)
                      |+.
T Consensus       151 Dl~  153 (205)
T d2qn6a3         151 DVV  153 (205)
T ss_dssp             GGS
T ss_pred             CCc
Confidence            995

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.14  E-value=1.4e-10  Score=99.64  Aligned_cols=75  Identities=17%  Similarity=0.218  Sum_probs=39.6

Q ss_pred             EEEEEeCCCCCCCCCC------cHHHHHHHHHHHhcCCccE-EEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEE
Q 024586           44 TLNIVDTPGLIEGGYV------NYHAIQLIKRFLLNKTIDV-LLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIV  116 (265)
Q Consensus        44 ~v~iiDTPG~~~~~~~------~~~~~~~i~~~l~~~~~d~-iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV  116 (265)
                      .+.+|||||+......      .......+..++.  .+|. +++|.+....-.+.....+++.+   -+.  ..++++|
T Consensus       132 ~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~--~~~~~il~v~~~~~~~~~~~~~~~~~~~---~~~--~~r~i~V  204 (306)
T d1jwyb_         132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIK--KQNAIIVAVTPANTDLANSDALQLAKEV---DPE--GKRTIGV  204 (306)
T ss_dssp             SEEEEECCCCC---------CSHHHHHHHHHHHHH--STTEEEEEEEESSSCSTTCSHHHHHHHH---CSS--CSSEEEE
T ss_pred             CceEecCCCccccccCCcchhHHHHHHHHHHHHHh--CCCceeEEeecccccccccHHHHHHHHh---CcC--CCeEEEE
Confidence            3789999999864322      1233445555554  4455 44444433212223333333333   222  2789999


Q ss_pred             EeCccCCCC
Q 024586          117 LTHAQLSLP  125 (265)
Q Consensus       117 ~tk~D~~~~  125 (265)
                      +||+|..+.
T Consensus       205 itk~D~~~~  213 (306)
T d1jwyb_         205 ITKLDLMDK  213 (306)
T ss_dssp             EECTTSSCS
T ss_pred             Eeccccccc
Confidence            999998643

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.14  E-value=1.5e-10  Score=98.07  Aligned_cols=116  Identities=13%  Similarity=0.125  Sum_probs=80.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCc-----------ccccCC------CCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH
Q 024586            1 MGKGGVGKSSTVNSIIGEKA-----------VTVSTF------QSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA   63 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~-----------~~~~~~------~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~   63 (265)
                      +|..|+|||||+.+|+-...           ..+.++      .+.|........++++.+++++||||..+...   +.
T Consensus        12 ~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~~---e~   88 (276)
T d2bv3a2          12 AAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFTI---EV   88 (276)
T ss_dssp             EECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCST---TH
T ss_pred             EeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhhHH---HH
Confidence            58999999999999973110           011111      13344555678889999999999999976543   22


Q ss_pred             HHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCCCCCCCHHHHH
Q 024586           64 IQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSLPDRLDYEVFC  134 (265)
Q Consensus        64 ~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~~~~~~~~~~~  134 (265)
                      ...++      .+|..++|++... .+......+++...+..     .|.++++||.|.   ...++++.+
T Consensus        89 ~~~l~------~~D~avlVvda~~-Gv~~~T~~~w~~a~~~~-----lP~i~fINKmDr---~~ad~~~~l  144 (276)
T d2bv3a2          89 ERSMR------VLDGAIVVFDSSQ-GVEPQSETVWRQAEKYK-----VPRIAFANKMDK---TGADLWLVI  144 (276)
T ss_dssp             HHHHH------HCCEEEEEEETTT-SSCHHHHHHHHHHHTTT-----CCEEEEEECTTS---TTCCHHHHH
T ss_pred             HHHHH------hhhheEEeccccC-CcchhHHHHHHHHHHcC-----CCEEEEEecccc---cccccchhH
Confidence            33333      5689988866543 47888888888887664     899999999997   345565554

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.08  E-value=4.8e-10  Score=92.16  Aligned_cols=110  Identities=17%  Similarity=0.110  Sum_probs=70.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCccc----------cc----------------------CCCCCCCccEEEEeeeCCeEEEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVT----------VS----------------------TFQSEGPRPVMVSRSRAGFTLNIV   48 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~----------~~----------------------~~~~~t~~~~~~~~~~~g~~v~ii   48 (265)
                      +|..++|||||+++|+......          .+                      ...+.|...........++.++++
T Consensus        15 iGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~~~~ii   94 (222)
T d1zunb3          15 CGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAKRKFIIA   94 (222)
T ss_dssp             ECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSSEEEEEE
T ss_pred             EcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEeccceEEEEE
Confidence            5899999999999997421100          00                      001223333344566788999999


Q ss_pred             eCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           49 DTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        49 DTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      ||||..+.       ...+.+.+  ..+|++++|++... .+..+.++.+..+... |-   +++|+++||+|+..
T Consensus        95 D~PGH~df-------v~~~~~g~--~~aD~ailVvda~~-G~~~Qt~e~~~~~~~~-gv---~~iiv~vNK~D~~~  156 (222)
T d1zunb3          95 DTPGHEQY-------TRNMATGA--STCDLAIILVDARY-GVQTQTRRHSYIASLL-GI---KHIVVAINKMDLNG  156 (222)
T ss_dssp             ECCCSGGG-------HHHHHHHH--TTCSEEEEEEETTT-CSCHHHHHHHHHHHHT-TC---CEEEEEEECTTTTT
T ss_pred             eccchhhh-------hhhhcccc--ccCceEEEEecccc-CcccchHHHHHHHHHc-CC---CEEEEEEEcccccc
Confidence            99998532       22222222  47899999976654 4777777777655544 32   67999999999853

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.07  E-value=9.9e-10  Score=84.67  Aligned_cols=109  Identities=13%  Similarity=0.054  Sum_probs=67.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+|||||||+|+|++.+...+    ..|..........++..+.++|++|.........       .  .....|.++
T Consensus        11 vG~~~vGKSSLi~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~--~~~~~~~~~   77 (169)
T d1upta_          11 LGLDGAGKTTILYRLQVGEVVTT----IPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWR-------C--YYSNTDAVI   77 (169)
T ss_dssp             ECSTTSSHHHHHHHHHHSSCCCC----CCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGG-------G--GCTTCSEEE
T ss_pred             ECCCCCCHHHHHHHHhCCCCcce----ecccceeeeeeccCceEEEEeeccccccccccch-------h--hhhhhhhhh
Confidence            69999999999999999874322    2344455556677889999999998754322111       0  113678888


Q ss_pred             EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +++.+............+........ ....++++|.||.|+.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~iv~nk~Dl~  119 (169)
T d1upta_          78 YVVDSCDRDRIGISKSELVAMLEEEE-LRKAILVVFANKQDME  119 (169)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTST
T ss_pred             hhhhhhhcchhhhccchhhhhhhhhc-cccceEEEEEeecccc
Confidence            88665532222222222222222221 1237889999999985

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.04  E-value=5.3e-10  Score=94.32  Aligned_cols=107  Identities=14%  Similarity=0.141  Sum_probs=75.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcc-----cc------cC------CCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH
Q 024586            1 MGKGGVGKSSTVNSIIGEKAV-----TV------ST------FQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA   63 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~-----~~------~~------~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~   63 (265)
                      +|..|+|||||+.+|+.....     .+      .+      ..+.|.........+++.+++++||||..+..   .+.
T Consensus         8 iGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~---~e~   84 (267)
T d2dy1a2           8 VGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFV---GEI   84 (267)
T ss_dssp             EESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGH---HHH
T ss_pred             EcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhh---hhh
Confidence            589999999999999732110     01      11      12345555667888999999999999996431   233


Q ss_pred             HHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccC
Q 024586           64 IQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQL  122 (265)
Q Consensus        64 ~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~  122 (265)
                      ...++      -+|..|+|++... .........++.+.+..     .|.++++||+|.
T Consensus        85 ~~al~------~~D~avlvvda~~-Gv~~~t~~~~~~~~~~~-----~p~~i~iNk~D~  131 (267)
T d2dy1a2          85 RGALE------AADAALVAVSAEA-GVQVGTERAWTVAERLG-----LPRMVVVTKLDK  131 (267)
T ss_dssp             HHHHH------HCSEEEEEEETTT-CSCHHHHHHHHHHHHTT-----CCEEEEEECGGG
T ss_pred             hhhhc------ccCceEEEeeccC-CccchhHHHHHhhhhcc-----cccccccccccc
Confidence            33333      5699999966543 47888888888887765     899999999996

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.98  E-value=1.6e-09  Score=82.83  Aligned_cols=109  Identities=10%  Similarity=0.068  Sum_probs=69.1

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+|||||||+|+|.+.....+.    +|...........+....++||+|..........         .....++++
T Consensus         6 iG~~nvGKSSLln~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~   72 (166)
T d2qtvb1           6 LGLDNAGKTTLLHMLKNDRLATLQ----PTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKD---------YFPEVNGIV   72 (166)
T ss_dssp             ECSTTSSHHHHHHHHHHSCCCCCC----CCCSCEEEEECCTTCCEEEEECCCSGGGGGGGGG---------GCTTCSEEE
T ss_pred             ECCCCCCHHHHHHHHhCCCCCeee----ceeeEeEEEeccCCeeEEEEeeccchhhhhhHhh---------hhhheeeee
Confidence            699999999999999998754332    3444455566677788999999987443222111         114678999


Q ss_pred             EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ++++..+..........+...... ......+++++.||.|+.
T Consensus        73 ~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~i~~~k~d~~  114 (166)
T d2qtvb1          73 FLVDAADPERFDEARVELDALFNI-AELKDVPFVILGNKIDAP  114 (166)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTC-TTTTTCCEEEEEECTTSS
T ss_pred             eeccccchhhhhhhhHHHHhhhhh-hccCCceEEEEecccccc
Confidence            997766432222222232222222 223447899999999983

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.92  E-value=8.7e-10  Score=94.34  Aligned_cols=81  Identities=19%  Similarity=0.215  Sum_probs=64.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC-----------------eEEEEEeCCCCCCCCCCc---
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-----------------FTLNIVDTPGLIEGGYVN---   60 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g-----------------~~v~iiDTPG~~~~~~~~---   60 (265)
                      ||.++||||||+|+|++..++.+++++.+|..+......+.+                 .++.++|.||+..+....   
T Consensus        16 vG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~gA~~g~GL   95 (296)
T d1ni3a1          16 VGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVGL   95 (296)
T ss_dssp             EECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCCSSSSS
T ss_pred             ECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccccccccccc
Confidence            699999999999999998776788999999988776665443                 368999999998765443   


Q ss_pred             -HHHHHHHHHHHhcCCccEEEEEEecCC
Q 024586           61 -YHAIQLIKRFLLNKTIDVLLYVDRLDV   87 (265)
Q Consensus        61 -~~~~~~i~~~l~~~~~d~iL~V~~~d~   87 (265)
                       .+.+..++      .+|++++|++...
T Consensus        96 Gn~fL~~ir------~~d~lihVV~~f~  117 (296)
T d1ni3a1          96 GNAFLSHVR------AVDAIYQVVRAFD  117 (296)
T ss_dssp             CHHHHHHHT------TCSEEEEEEECCC
T ss_pred             HHHHHHHhh------ccceeEEEEeccC
Confidence             46777776      7899999987643

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.84  E-value=1e-09  Score=89.87  Aligned_cols=55  Identities=31%  Similarity=0.393  Sum_probs=37.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCC-------CCCCCccEEEEeeeCCeEEEEEeCCCCCCCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTF-------QSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY   58 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~-------~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~   58 (265)
                      +|.||||||||+|+|++.....++..       ..||+....+...-+|   .||||||+.+.+.
T Consensus       101 ~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~gg---~iiDTPG~r~~~l  162 (225)
T d1u0la2         101 AGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGG---YVVDTPGFANLEI  162 (225)
T ss_dssp             ECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSC---EEESSCSSTTCCC
T ss_pred             ECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCCc---EEEeCCccccccc
Confidence            59999999999999999765444332       2355555555554444   4999999977654

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.84  E-value=6e-10  Score=96.14  Aligned_cols=82  Identities=21%  Similarity=0.218  Sum_probs=39.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEee------------------------eCCeEEEEEeCCCCCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRS------------------------RAGFTLNIVDTPGLIEG   56 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~------------------------~~g~~v~iiDTPG~~~~   56 (265)
                      ||.++||||||+|+|+|.+. .+++++.||.++......                        ....++.++|+||+..+
T Consensus         6 vG~pn~GKStlfn~lt~~~~-~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pGli~g   84 (319)
T d1wxqa1           6 VGKPNVGKSTFFSAATLVDV-EIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGLVPG   84 (319)
T ss_dssp             EECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-----
T ss_pred             ECCCCCCHHHHHHHHHCCCC-chhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCCcccc
Confidence            69999999999999999875 888899888776543221                        12246899999999765


Q ss_pred             CCCcHHHHHHHHHHHh-cCCccEEEEEEecC
Q 024586           57 GYVNYHAIQLIKRFLL-NKTIDVLLYVDRLD   86 (265)
Q Consensus        57 ~~~~~~~~~~i~~~l~-~~~~d~iL~V~~~d   86 (265)
                      ....+   ....+++. ...+|++++|++..
T Consensus        85 a~~g~---~~~~~~l~~i~~~d~ii~VVd~~  112 (319)
T d1wxqa1          85 AHEGR---GLGNKFLDDLRMASALIHVVDAT  112 (319)
T ss_dssp             -------------CCCSSTTCSEEEEEEETT
T ss_pred             hhccc---chHHHHHHhhccceEEEEEeccc
Confidence            43322   12233432 26899999997764

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.83  E-value=8.9e-10  Score=93.45  Aligned_cols=78  Identities=22%  Similarity=0.247  Sum_probs=56.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCC-----------------eEEEEEeCCCCCCCCCC----
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAG-----------------FTLNIVDTPGLIEGGYV----   59 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g-----------------~~v~iiDTPG~~~~~~~----   59 (265)
                      ||.++||||||+|+|++.++ ..++++.+|..+..+...+.+                 -.+.++|.||+..+...    
T Consensus         8 vG~Pn~GKSTlf~~lt~~~~-~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~~g~Gl   86 (278)
T d1jala1           8 VGLPNVGKSTLFNALTKAGI-EAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASKGEGL   86 (278)
T ss_dssp             ECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHHHGGG
T ss_pred             ECCCCCCHHHHHHHHHCCCC-ccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcccCCCc
Confidence            69999999999999999875 778888899887776655432                 24789999999875432    


Q ss_pred             cHHHHHHHHHHHhcCCccEEEEEEec
Q 024586           60 NYHAIQLIKRFLLNKTIDVLLYVDRL   85 (265)
Q Consensus        60 ~~~~~~~i~~~l~~~~~d~iL~V~~~   85 (265)
                      ..+.+..|+      .+|++++|++.
T Consensus        87 g~~FL~~ir------~~d~LihVVr~  106 (278)
T d1jala1          87 GNKFLANIR------ETDAIGHVVRC  106 (278)
T ss_dssp             TCCHHHHHH------TCSEEEEEEEC
T ss_pred             cHHHHHHHH------hccceEEEeec
Confidence            225777887      77999999765

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.82  E-value=5.4e-09  Score=81.66  Aligned_cols=109  Identities=14%  Similarity=0.094  Sum_probs=62.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      ||.+|||||||+|+|.+.......+    |..........++..+..+|++|..........   .      ....+.++
T Consensus        19 vG~~~vGKTsLl~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~------~~~~~~~~   85 (186)
T d1f6ba_          19 LGLDNAGKTTLLHMLKDDRLGQHVP----TLHPTSEELTIAGMTFTTFDLGGHIQARRVWKN---Y------LPAINGIV   85 (186)
T ss_dssp             EEETTSSHHHHHHHHSCC------C----CCCCSCEEEEETTEEEEEEEECC----CCGGGG---G------GGGCSEEE
T ss_pred             ECCCCCCHHHHHHHHhCCCCcceec----ccccceeEEEecccccccccccchhhhhhHHhh---h------hcccceee
Confidence            6999999999999999987533221    222223455667888999999998655433221   1      13678999


Q ss_pred             EEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           81 YVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      ++++..+..........+....... .....|++++.||.|+.
T Consensus        86 ~~~d~~d~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~K~D~~  127 (186)
T d1f6ba_          86 FLVDCADHERLLESKEELDSLMTDE-TIANVPILILGNKIDRP  127 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCG-GGTTSCEEEEEECTTST
T ss_pred             eeeeccCccchHHHHHHHHHhhccc-ccCCCceEEEEeccCcc
Confidence            9977664322222222222222111 11238999999999983

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.79  E-value=1.8e-09  Score=91.26  Aligned_cols=60  Identities=22%  Similarity=0.340  Sum_probs=38.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHH
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHA   63 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~   63 (265)
                      +|.++||||||+|+|.|.+.+.+++.+++|......   ..+..+.++||||+.-+...+++.
T Consensus       118 vG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~i---~~~~~~~l~DTPGi~~p~~~~~~~  177 (273)
T d1puja_         118 IGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWV---KVGKELELLDTPGILWPKFEDELV  177 (273)
T ss_dssp             EESTTSSHHHHHHHHHTSCCC------------CCE---EETTTEEEEECCCCCCSCCCCHHH
T ss_pred             EecCccchhhhhhhhhccceEEECCcccccccceEE---ECCCCeEEecCCCccccCCccHHH
Confidence            699999999999999999998999999988764432   234568999999998776665543

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.78  E-value=2.5e-09  Score=85.24  Aligned_cols=108  Identities=12%  Similarity=0.101  Sum_probs=62.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+|||||||++.+-     ...... .|...........+..+.++||+|.........       .  ....+++++
T Consensus         8 lG~~~vGKTsll~r~~-----f~~~~~-pTiG~~~~~~~~~~~~~~~~D~~gq~~~~~~~~-------~--~~~~~~~~~   72 (200)
T d1zcba2           8 LGAGESGKSTFLKQMR-----IIHGQD-PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWF-------E--CFDSVTSIL   72 (200)
T ss_dssp             ECSTTSSHHHHHHHHH-----HHHSCC-CCSSEEEEEEEETTEEEEEEEECC-------CT-------T--SCTTCCEEE
T ss_pred             ECCCCCCHHHHHHHHh-----cCCCCC-CeeeeEEEEEeeeeeeeeeecccceeeeccccc-------c--cccccceeE
Confidence            6999999999999992     122222 244455566778899999999999843221111       0  113678999


Q ss_pred             EEEecCCcC-CC------HHHHHHHHHHHHhcCc--CcCCcEEEEEeCccCC
Q 024586           81 YVDRLDVYR-VD------NLDKQITRAITDNFGE--QIWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~~r-~~------~~d~~~l~~l~~~~g~--~~~~~~ivV~tk~D~~  123 (265)
                      ++++..+.. +.      ......+..+......  ....|+++|+||+|+.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~  124 (200)
T d1zcba2          73 FLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLL  124 (200)
T ss_dssp             EEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHH
T ss_pred             EEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhh
Confidence            997766422 10      1112222222222211  1237999999999973

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.74  E-value=2.7e-09  Score=88.50  Aligned_cols=111  Identities=13%  Similarity=0.131  Sum_probs=67.4

Q ss_pred             CCCCCCCHHHHHHHHhC---CC------------------ccc---------ccCCCCCCCccEEEEeeeCCeEEEEEeC
Q 024586            1 MGKGGVGKSSTVNSIIG---EK------------------AVT---------VSTFQSEGPRPVMVSRSRAGFTLNIVDT   50 (265)
Q Consensus         1 vG~tg~GKSSliN~llg---~~------------------~~~---------~~~~~~~t~~~~~~~~~~~g~~v~iiDT   50 (265)
                      +|..++|||||+-+|+-   .-                  .+.         .....+.|.......+.+.+++++++||
T Consensus        12 iGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~iiDt   91 (239)
T d1f60a3          12 IGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQVTVIDA   91 (239)
T ss_dssp             EECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEEEEEEEC
T ss_pred             EeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCCEEEEEEEC
Confidence            58899999999999962   10                  000         0011244555556677889999999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcC------CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           51 PGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR------VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r------~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      ||..+.       ...+.+  ....+|+.|+|++.....      ...+.++.+... +..|-   +++||++||+|+..
T Consensus        92 PGH~df-------~~~~~~--g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~-~~~gv---~~iiv~iNKmD~~~  158 (239)
T d1f60a3          92 PGHRDF-------IKNMIT--GTSQADCAILIIAGGVGEFEAGISKDGQTREHALLA-FTLGV---RQLIVAVNKMDSVK  158 (239)
T ss_dssp             CCCTTH-------HHHHHH--SSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHH-HHTTC---CEEEEEEECGGGGT
T ss_pred             CCcHHH-------HHHHHH--HHHHhCEEEEEEECCCCccccccCchHhHHHHHHHH-HHcCC---CeEEEEEECCCCCC
Confidence            998542       223222  124789999886554211      112333333333 33332   67899999999854

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.73  E-value=1.2e-08  Score=84.90  Aligned_cols=74  Identities=9%  Similarity=0.009  Sum_probs=41.3

Q ss_pred             EeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcC------CCHHHHHHHHHHHHhcCcCcC
Q 024586           37 SRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR------VDNLDKQITRAITDNFGEQIW  110 (265)
Q Consensus        37 ~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r------~~~~d~~~l~~l~~~~g~~~~  110 (265)
                      ...+.+..+.++||||..+..       ..+.+.  ...+|++++|++.+..-      ...+.++.+..+. ..|-   
T Consensus        96 ~~~~~~~~i~~iDtPGH~df~-------~~~~~g--~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~-~~~i---  162 (245)
T d1r5ba3          96 YFETEHRRFSLLDAPGHKGYV-------TNMING--ASQADIGVLVISARRGEFEAGFERGGQTREHAVLAR-TQGI---  162 (245)
T ss_dssp             EEECSSEEEEECCCCC--------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHH-HTTC---
T ss_pred             ccccccceeeeecccccccch-------hhhhhh--hhhhcceeeEEEcCCCccCCccccccchHHHHHHHH-HcCC---
Confidence            455678899999999986432       122211  13789999997665311      1113334443333 3332   


Q ss_pred             CcEEEEEeCccCC
Q 024586          111 KRALIVLTHAQLS  123 (265)
Q Consensus       111 ~~~ivV~tk~D~~  123 (265)
                      +++++++||+|+.
T Consensus       163 ~~iiv~iNKmD~~  175 (245)
T d1r5ba3         163 NHLVVVINKMDEP  175 (245)
T ss_dssp             SSEEEEEECTTST
T ss_pred             CeEEEEEEcCCCC
Confidence            5789999999985

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.71  E-value=4.4e-08  Score=85.04  Aligned_cols=66  Identities=17%  Similarity=0.236  Sum_probs=48.8

Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCcc
Q 024586           42 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQ  121 (265)
Q Consensus        42 g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D  121 (265)
                      +..+++|||||..+..   .+....++      -+|..++|++... .+......+++...+..     .|.++++||.|
T Consensus        95 ~~~inliDtPGh~dF~---~ev~~al~------~~D~allVVda~e-Gv~~qT~~~~~~a~~~~-----~p~i~viNKiD  159 (341)
T d1n0ua2          95 SFLINLIDSPGHVDFS---SEVTAALR------VTDGALVVVDTIE-GVCVQTETVLRQALGER-----IKPVVVINKVD  159 (341)
T ss_dssp             EEEEEEECCCCCCSSC---HHHHHHHH------TCSEEEEEEETTT-BSCHHHHHHHHHHHHTT-----CEEEEEEECHH
T ss_pred             ceEEEEEcCCCcHHHH---HHHHHHHh------hcCceEEEEeccc-CcchhHHHHHHHHHHcC-----CCeEEEEECcc
Confidence            4568999999996543   23444444      6799999966553 47788888887766654     89999999998


Q ss_pred             C
Q 024586          122 L  122 (265)
Q Consensus       122 ~  122 (265)
                      .
T Consensus       160 r  160 (341)
T d1n0ua2         160 R  160 (341)
T ss_dssp             H
T ss_pred             c
Confidence            6

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.70  E-value=8.8e-09  Score=84.15  Aligned_cols=107  Identities=12%  Similarity=0.132  Sum_probs=68.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+|||||||++.+.....      . +|.........+++..+.++|+.|...........         -.++++++
T Consensus        12 lG~~~vGKTsll~~~~~~~~------~-pTiG~~~~~~~~~~~~~~~~D~~Gq~~~r~~w~~~---------~~~~~~ii   75 (221)
T d1azta2          12 LGAGESGKSTIVKQMRILHV------V-LTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQC---------FNDVTAII   75 (221)
T ss_dssp             ECSTTSSHHHHHHHHHHHHC------C-CCCSCEEEEEEETTEEEEEEECCCSTTTTTGGGGG---------CTTCSEEE
T ss_pred             ECCCCCCHHHHHHHHhcCCc------C-CCCCeEEEEEEECcEEEEEEecCccceeccchhhh---------cccccceE
Confidence            69999999999999864321      1 23334455677889999999999985443322211         14789999


Q ss_pred             EEEecCCcCC-------CHHHHHHHHHHHHhcCcC--cCCcEEEEEeCccCC
Q 024586           81 YVDRLDVYRV-------DNLDKQITRAITDNFGEQ--IWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~~r~-------~~~d~~~l~~l~~~~g~~--~~~~~ivV~tk~D~~  123 (265)
                      +|+++++...       ...-.+.++.+.......  ...|+++++||+|+.
T Consensus        76 ~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~  127 (221)
T d1azta2          76 FVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLL  127 (221)
T ss_dssp             EEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHH
T ss_pred             EEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhh
Confidence            9987664210       111223334444444332  237999999999983

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.68  E-value=7.8e-09  Score=81.64  Aligned_cols=103  Identities=15%  Similarity=0.177  Sum_probs=64.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      ||..|||||||++.+.....      +  |..............+.+|||.|........       ..+  -.++++++
T Consensus         8 lG~~~vGKTsl~~r~~~~~~------~--t~~~~~~~~~~~~~~~~i~D~~Gq~~~~~~~-------~~~--~~~~~~~i   70 (195)
T d1svsa1           8 LGAGESGKSTIVKQMKIIHE------A--GTGIVETHFTFKDLHFKMFDVGGQRSERKKW-------IHC--FEGVTAII   70 (195)
T ss_dssp             ECSTTSSHHHHHHHHHHHHS------C--CCSEEEEEEEETTEEEEEEEECCSGGGGGGG-------GGG--CTTCSEEE
T ss_pred             ECCCCCCHHHHHHHHhhCCC------C--CccEEEEEEEeeeeeeeeeccccccccccch-------hhc--ccCCceee
Confidence            69999999999999875432      1  2223345667788899999999974332211       111  24889999


Q ss_pred             EEEecCCcC-CCH------HHHH----HHHHHHHhcCcCcCCcEEEEEeCccC
Q 024586           81 YVDRLDVYR-VDN------LDKQ----ITRAITDNFGEQIWKRALIVLTHAQL  122 (265)
Q Consensus        81 ~V~~~d~~r-~~~------~d~~----~l~~l~~~~g~~~~~~~ivV~tk~D~  122 (265)
                      +|+++++.. +..      ...+    +...+.......  .|+++|+||.|+
T Consensus        71 ~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~--~~~~lv~Nk~d~  121 (195)
T d1svsa1          71 FCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTD--TSIILFLNKKDL  121 (195)
T ss_dssp             EEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTT--SEEEEEEECHHH
T ss_pred             eEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCC--CCEEEEeccchh
Confidence            998765422 211      1112    222222222333  689999999986

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.63  E-value=2.2e-09  Score=88.16  Aligned_cols=54  Identities=28%  Similarity=0.430  Sum_probs=31.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCC-------CCCCCccEEEEeeeCCeEEEEEeCCCCCCCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTF-------QSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY   58 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~-------~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~   58 (265)
                      +|.||||||||+|+|+++....++..       ..||+....+.  .+|-  .||||||+.+.+.
T Consensus       103 ~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~~--~~gg--~iiDTPG~r~~~l  163 (231)
T d1t9ha2         103 AGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIH--TSGG--LVADTPGFSSLEF  163 (231)
T ss_dssp             EESHHHHHHHHHHHHCC-------------------CCCCCEEE--ETTE--EEESSCSCSSCCC
T ss_pred             ECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEEe--cCCC--EEEECCccccccc
Confidence            59999999999999999754443332       23444444433  3442  4899999977654

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.61  E-value=2.7e-08  Score=81.46  Aligned_cols=111  Identities=13%  Similarity=0.186  Sum_probs=61.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcc------------------------------cccCCCCCCCccEEEEeeeCCeEEEEEeC
Q 024586            1 MGKGGVGKSSTVNSIIGEKAV------------------------------TVSTFQSEGPRPVMVSRSRAGFTLNIVDT   50 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~------------------------------~~~~~~~~t~~~~~~~~~~~g~~v~iiDT   50 (265)
                      +|..++|||||+-+|+.....                              ......+.|........+.+++.++++||
T Consensus         9 iGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~i~iiDt   88 (224)
T d1jnya3           9 IGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYFFTIIDA   88 (224)
T ss_dssp             EESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCEEEECCC
T ss_pred             EecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCceeEEeeC
Confidence            588899999999999632100                              00011223333444566778899999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcC------CCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           51 PGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYR------VDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        51 PG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r------~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      ||..+       +...+.+.+  .-+|+.|+|++....-      ...+.++.+.. .+..|.   +++|+++||+|+..
T Consensus        89 PGH~d-------f~~~~~~g~--~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~-~~~~~~---~~iIv~iNK~D~~~  155 (224)
T d1jnya3          89 PGHRD-------FVKNMITGA--SQADAAILVVSAKKGEYEAGMSVEGQTREHIIL-AKTMGL---DQLIVAVNKMDLTE  155 (224)
T ss_dssp             SSSTT-------HHHHHHHTS--SCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHH-HHHTTC---TTCEEEEECGGGSS
T ss_pred             CCcHH-------HHHHHHHHH--HhhceEEEEEecccCcccccccccchhHHHHHH-HHHhCC---CceEEEEEcccCCC
Confidence            99853       223333322  4679999997665321      11122222222 223332   67899999999864

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.52  E-value=4.1e-08  Score=77.61  Aligned_cols=107  Identities=16%  Similarity=0.201  Sum_probs=66.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEE
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLL   80 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL   80 (265)
                      +|.+|||||||++.+.....   +..  +|..............+.++||.|..........         .-.++++++
T Consensus         8 lG~~~vGKTsll~r~~~~~~---~~~--pTiG~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~---------~~~~~~~~i   73 (200)
T d2bcjq2           8 LGTGESGKSTFIKQMRIIHG---SGV--PTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIH---------CFENVTSIM   73 (200)
T ss_dssp             EESTTSSHHHHHHHHHHHTS---SCC--CCCSCEEEEEECSSCEEEEEECCCSTTGGGGGGG---------GCSSCSEEE
T ss_pred             ECCCCCCHHHHHHHHhCCCC---CCC--ceeeEEEEEEeccceeeeeccccccccccccccc---------cccccceee
Confidence            69999999999999976652   111  2333444556677888999999998543322211         114789999


Q ss_pred             EEEecCCcC-C----------CHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           81 YVDRLDVYR-V----------DNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        81 ~V~~~d~~r-~----------~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      +|++..+.. +          .+.-..+...+......+  .++++|+||.|+.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~--~~~~~v~NK~Dl~  125 (200)
T d2bcjq2          74 FLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQN--SSVILFLNKKDLL  125 (200)
T ss_dssp             EEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSS--SEEEEEEECHHHH
T ss_pred             EeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccC--ccEEEecchhhhh
Confidence            997765421 0          111122333333332222  7899999999873

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=98.46  E-value=8.1e-08  Score=78.37  Aligned_cols=76  Identities=16%  Similarity=0.173  Sum_probs=37.1

Q ss_pred             EEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           44 TLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        44 ~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      .+.++||||..+...    ..............+.++++++... .......................+.++|+||+|+.
T Consensus        96 ~~~~id~~g~~~~~~----~~~~~~~~~~~~~~~~~v~vvd~~~-~~~~~~~~~~~l~~~~~~~~~~~~~ivvinK~D~~  170 (244)
T d1yrba1          96 DYVLIDTPGQMETFL----FHEFGVRLMENLPYPLVVYISDPEI-LKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLL  170 (244)
T ss_dssp             SEEEEECCSSHHHHH----HSHHHHHHHHTSSSCEEEEEECGGG-CCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGC
T ss_pred             ceeeeccccchhHHH----HHHHHHHHHhhccCceEEEEecccc-ccCchhHhhHHHHHHHHHHHhCCCceeeeeccccc
Confidence            489999999854211    1111222223335677777744321 12222221111111100011226889999999996


Q ss_pred             C
Q 024586          124 L  124 (265)
Q Consensus       124 ~  124 (265)
                      .
T Consensus       171 ~  171 (244)
T d1yrba1         171 S  171 (244)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=98.10  E-value=1.1e-06  Score=75.73  Aligned_cols=16  Identities=31%  Similarity=0.476  Sum_probs=14.9

Q ss_pred             CCCCCCCHHHHHHHHh
Q 024586            1 MGKGGVGKSSTVNSII   16 (265)
Q Consensus         1 vG~tg~GKSSliN~ll   16 (265)
                      .|.+|||||||+|+|.
T Consensus        60 tG~pGaGKSTLi~~l~   75 (327)
T d2p67a1          60 TGTPGAGKSTFLEAFG   75 (327)
T ss_dssp             EECTTSCHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHH
Confidence            4899999999999997

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.06  E-value=8.2e-06  Score=65.46  Aligned_cols=72  Identities=19%  Similarity=0.140  Sum_probs=46.8

Q ss_pred             CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCc
Q 024586           41 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA  120 (265)
Q Consensus        41 ~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~  120 (265)
                      .+..+.+|||||..   ..+...++++..+....++|-+++|.+...   ...+...++...+.+     ...=+++||.
T Consensus        91 ~~~d~vlIDTaGr~---~~d~~~~~el~~~~~~~~~~~~llv~~a~~---~~~~~~~~~~f~~~~-----~~~~~I~TKl  159 (207)
T d1ls1a2          91 EARDLILVDTAGRL---QIDEPLMGELARLKEVLGPDEVLLVLDAMT---GQEALSVARAFDEKV-----GVTGLVLTKL  159 (207)
T ss_dssp             HTCCEEEEECCCCS---SCCHHHHHHHHHHHHHHCCSEEEEEEEGGG---THHHHHHHHHHHHHT-----CCCEEEEECG
T ss_pred             ccCcceeecccccc---hhhhhhHHHHHHHHhhcCCceEEEEecccc---chhHHHHHHHHHhhC-----CCCeeEEeec
Confidence            45578999999984   345556666666654457788888854432   344555555555544     3345889999


Q ss_pred             cCC
Q 024586          121 QLS  123 (265)
Q Consensus       121 D~~  123 (265)
                      |..
T Consensus       160 De~  162 (207)
T d1ls1a2         160 DGD  162 (207)
T ss_dssp             GGC
T ss_pred             Ccc
Confidence            974

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.82  E-value=0.00011  Score=58.66  Aligned_cols=72  Identities=13%  Similarity=0.134  Sum_probs=40.8

Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHHHHH------hcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEE
Q 024586           42 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFL------LNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALI  115 (265)
Q Consensus        42 g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l------~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~iv  115 (265)
                      +..+.+|||||...   .+.+..++++...      ....++-+++|.+...   ..++...+....+.+     ...=+
T Consensus        88 ~~d~ilIDTaGr~~---~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~---~~~~~~~~~~~~~~~-----~~~~l  156 (207)
T d1okkd2          88 GYDLLFVDTAGRLH---TKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVT---GQNGLEQAKKFHEAV-----GLTGV  156 (207)
T ss_dssp             TCSEEEECCCCCCT---TCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTB---CTHHHHHHHHHHHHH-----CCSEE
T ss_pred             CCCEEEcCccccch---hhHHHHHHHHHHHHHhhhcccCCCceEEEEeeccc---CchHHHHHHHhhhcc-----CCceE
Confidence            55789999999743   3334444443332      1135677777854442   233443333333333     44567


Q ss_pred             EEeCccCCC
Q 024586          116 VLTHAQLSL  124 (265)
Q Consensus       116 V~tk~D~~~  124 (265)
                      ++||.|...
T Consensus       157 I~TKlDet~  165 (207)
T d1okkd2         157 IVTKLDGTA  165 (207)
T ss_dssp             EEECTTSSC
T ss_pred             EEeccCCCC
Confidence            899999863

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.81  E-value=1.9e-05  Score=63.43  Aligned_cols=74  Identities=16%  Similarity=0.136  Sum_probs=40.6

Q ss_pred             CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCc
Q 024586           41 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHA  120 (265)
Q Consensus        41 ~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~  120 (265)
                      .+..+.+|||||..... .....+++++.....-.++-+++|.+...   ..++........+.+     ..--+++||.
T Consensus        93 ~~~d~IlIDTaGr~~~~-~~~~~~~el~~~~~~~~~~~~~LVl~a~~---~~~~~~~~~~~~~~~-----~~~~lI~TKl  163 (211)
T d1j8yf2          93 EKMEIIIVDTAGRHGYG-EEAALLEEMKNIYEAIKPDEVTLVIDASI---GQKAYDLASKFNQAS-----KIGTIIITKM  163 (211)
T ss_dssp             TTCSEEEEECCCSCCTT-CHHHHHHHHHHHHHHHCCSEEEEEEEGGG---GGGHHHHHHHHHHHC-----TTEEEEEECT
T ss_pred             cCCceEEEecCCcCccc-hhhHHHHHHHHHHhhcCCceEEEEEeccc---CcchHHHHhhhhccc-----CcceEEEecc
Confidence            45678999999974322 11223445554443335677788855443   122333333333333     3345779999


Q ss_pred             cCC
Q 024586          121 QLS  123 (265)
Q Consensus       121 D~~  123 (265)
                      |..
T Consensus       164 Det  166 (211)
T d1j8yf2         164 DGT  166 (211)
T ss_dssp             TSC
T ss_pred             cCC
Confidence            975

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.77  E-value=4.9e-06  Score=71.34  Aligned_cols=60  Identities=22%  Similarity=0.253  Sum_probs=34.2

Q ss_pred             CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHH-HHHhcCcCcCCcEEEEEeC
Q 024586           41 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRA-ITDNFGEQIWKRALIVLTH  119 (265)
Q Consensus        41 ~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~-l~~~~g~~~~~~~ivV~tk  119 (265)
                      .|..+.+|.|.|.+...    ..   +.     ..+|.+++|.....    -.+.+.++. +.+       ..=++|+||
T Consensus       142 ~g~d~iiiETVG~gq~e----~~---~~-----~~~D~~v~v~~p~~----GD~iQ~~k~gilE-------~aDi~vvNK  198 (323)
T d2qm8a1         142 AGFDVILVETVGVGQSE----TA---VA-----DLTDFFLVLMLPGA----GDELQGIKKGIFE-------LADMIAVNK  198 (323)
T ss_dssp             TTCCEEEEEECSSSSCH----HH---HH-----TTSSEEEEEECSCC----------CCTTHHH-------HCSEEEEEC
T ss_pred             CCCCeEEEeehhhhhhh----hh---hh-----cccceEEEEeeccc----hhhhhhhhhhHhh-------hhheeeEec
Confidence            46678999999985431    11   11     36799999965443    223333221 112       345999999


Q ss_pred             ccCC
Q 024586          120 AQLS  123 (265)
Q Consensus       120 ~D~~  123 (265)
                      +|+.
T Consensus       199 aD~~  202 (323)
T d2qm8a1         199 ADDG  202 (323)
T ss_dssp             CSTT
T ss_pred             cccc
Confidence            9973

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.71  E-value=1.3e-05  Score=64.30  Aligned_cols=72  Identities=13%  Similarity=0.127  Sum_probs=40.3

Q ss_pred             CeEEEEEeCCCCCCCCCCcHHHHHHHHHHH---hc---CCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEE
Q 024586           42 GFTLNIVDTPGLIEGGYVNYHAIQLIKRFL---LN---KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALI  115 (265)
Q Consensus        42 g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l---~~---~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~iv  115 (265)
                      +..+.+|||||..   ..+....+++++..   ..   ..++-+++|.+...   ...+........+..     ...=+
T Consensus        91 ~~d~ilIDTaGr~---~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~---~~~~~~~~~~~~~~~-----~~~~l  159 (211)
T d2qy9a2          91 NIDVLIADTAGRL---QNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDAST---GQNAVSQAKLFHEAV-----GLTGI  159 (211)
T ss_dssp             TCSEEEECCCCCG---GGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGG---THHHHHHHHHHHHHS-----CCCEE
T ss_pred             CCCEEEeccCCCc---cccHHHHHHHHHHHHHHhhhcccCcceeeeehhccc---CcchHHHHhhhhhcc-----CCceE
Confidence            4568999999973   34445555555443   11   13567777844332   233333332222333     45568


Q ss_pred             EEeCccCCC
Q 024586          116 VLTHAQLSL  124 (265)
Q Consensus       116 V~tk~D~~~  124 (265)
                      ++||.|...
T Consensus       160 IlTKlDe~~  168 (211)
T d2qy9a2         160 TLTKLDGTA  168 (211)
T ss_dssp             EEECCTTCT
T ss_pred             EEeecCCCC
Confidence            899999853

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.68  E-value=9.4e-06  Score=65.36  Aligned_cols=72  Identities=13%  Similarity=0.095  Sum_probs=40.2

Q ss_pred             CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHhc------CCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEE
Q 024586           41 AGFTLNIVDTPGLIEGGYVNYHAIQLIKRFLLN------KTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRAL  114 (265)
Q Consensus        41 ~g~~v~iiDTPG~~~~~~~~~~~~~~i~~~l~~------~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~i  114 (265)
                      ++..+.+|||||..   ..+.+..+++......      ..++-+++|.+...   ...+...+....+.+     ...=
T Consensus        92 ~~~d~ilIDTaGr~---~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~---~~~~~~~~~~~~~~~-----~~~~  160 (213)
T d1vmaa2          92 RNKDVVIIDTAGRL---HTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATT---GQNGLVQAKIFKEAV-----NVTG  160 (213)
T ss_dssp             TTCSEEEEEECCCC---SCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGG---HHHHHHHHHHHHHHS-----CCCE
T ss_pred             cCCCEEEEeccccc---cchHHHHHHHHHHHhhhhhccccccceeEEeecccc---Ccchhhhhhhhcccc-----CCce
Confidence            35678999999974   3444555555554321      13677888844432   122222222222222     4556


Q ss_pred             EEEeCccCC
Q 024586          115 IVLTHAQLS  123 (265)
Q Consensus       115 vV~tk~D~~  123 (265)
                      +++||.|..
T Consensus       161 lI~TKlDe~  169 (213)
T d1vmaa2         161 IILTKLDGT  169 (213)
T ss_dssp             EEEECGGGC
T ss_pred             EEEecccCC
Confidence            889999985

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=0.00019  Score=59.85  Aligned_cols=57  Identities=28%  Similarity=0.327  Sum_probs=39.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCc-ccccC-CCCCCCccEEEEeee---CCeEEEEEeCCCCCCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEKA-VTVST-FQSEGPRPVMVSRSR---AGFTLNIVDTPGLIEGG   57 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~-~~~~~-~~~~t~~~~~~~~~~---~g~~v~iiDTPG~~~~~   57 (265)
                      +|+.++|||+|+|.|+|... +.++. ..++|.........+   .+..+.++||.|+.+..
T Consensus        38 ~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~~~   99 (277)
T d1f5na2          38 VGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVE   99 (277)
T ss_dssp             EEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGG
T ss_pred             ECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEecccccccc
Confidence            59999999999999999763 22332 234565554443332   45679999999998743

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.07  E-value=0.00046  Score=53.39  Aligned_cols=19  Identities=32%  Similarity=0.650  Sum_probs=16.8

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|+...
T Consensus         9 ~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           9 LGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             ECCTTSSHHHHHHHHHHHC
T ss_pred             ECCCCCCHHHHHHHHHHhC
Confidence            5999999999999999653

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.76  E-value=0.0013  Score=49.85  Aligned_cols=18  Identities=39%  Similarity=0.706  Sum_probs=16.7

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|++|+|||||++.|+|.
T Consensus         6 ~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           6 TGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCcHHHHHHHHHHhc
Confidence            599999999999999985

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.71  E-value=0.00059  Score=54.05  Aligned_cols=19  Identities=26%  Similarity=0.515  Sum_probs=16.9

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|+||||||||++.|+...
T Consensus         8 ~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           8 SAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             ECCTTSCHHHHHHHHHHHS
T ss_pred             ECCCCCCHHHHHHHHHhhC
Confidence            5999999999999998653

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.67  E-value=0.0061  Score=48.48  Aligned_cols=17  Identities=35%  Similarity=0.585  Sum_probs=15.0

Q ss_pred             CCCCCCHHHHHHHHhCC
Q 024586            2 GKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         2 G~tg~GKSSliN~llg~   18 (265)
                      |--|+|||||+|.++..
T Consensus        10 GFLGaGKTTll~~lL~~   26 (222)
T d1nija1          10 GFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             ESSSSSCHHHHHHHHHS
T ss_pred             eCCCCCHHHHHHHHHhc
Confidence            67899999999999864

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=95.65  E-value=0.0018  Score=52.51  Aligned_cols=19  Identities=32%  Similarity=0.403  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|+|--
T Consensus        35 vG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          35 VGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             ECSTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCCHHHHHHHHHhcC
Confidence            6999999999999999964

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=95.64  E-value=0.0034  Score=50.78  Aligned_cols=19  Identities=26%  Similarity=0.454  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|-.
T Consensus        37 iG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          37 IGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             EESTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCCHHHHHHHHcCCc
Confidence            5999999999999999964

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=95.56  E-value=0.0021  Score=52.17  Aligned_cols=19  Identities=26%  Similarity=0.246  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|+|--
T Consensus        34 vG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          34 AGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             ECCTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCCHHHHHHHHHHhh
Confidence            6999999999999999864

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.56  E-value=0.0021  Score=51.77  Aligned_cols=19  Identities=42%  Similarity=0.496  Sum_probs=17.3

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|-.
T Consensus        37 iG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          37 MGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             ECSTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCCcchhhHhccCCC
Confidence            6999999999999999964

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=95.54  E-value=0.0021  Score=47.93  Aligned_cols=17  Identities=24%  Similarity=0.446  Sum_probs=15.8

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|.+|||||||+|.|+.
T Consensus         8 tG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           8 AAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHH
Confidence            59999999999999985

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.54  E-value=0.0022  Score=51.68  Aligned_cols=19  Identities=37%  Similarity=0.627  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|-.
T Consensus        32 iGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          32 VGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             ECCTTSSHHHHHHHHHTSS
T ss_pred             ECCCCChHHHHHHHHhcCC
Confidence            6999999999999999964

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.52  E-value=0.0022  Score=50.38  Aligned_cols=19  Identities=26%  Similarity=0.469  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|.-
T Consensus        33 ~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          33 HGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             ECCTTSSHHHHHHHHTTSS
T ss_pred             ECCCCChHHHHHHHHhccc
Confidence            5999999999999999964

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.49  E-value=0.0008  Score=51.78  Aligned_cols=18  Identities=33%  Similarity=0.486  Sum_probs=16.3

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|++||||||+++.|...
T Consensus         8 ~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           8 SGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHhh
Confidence            599999999999999865

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=95.49  E-value=0.0026  Score=51.21  Aligned_cols=19  Identities=32%  Similarity=0.608  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|-.
T Consensus        31 iG~nGaGKSTLl~~l~Gl~   49 (231)
T d1l7vc_          31 VGPNGAGKSTLLARMAGMT   49 (231)
T ss_dssp             BCCTTSSHHHHHHHHHTSC
T ss_pred             ECCCCCcHHHHHHHHhCCC
Confidence            6999999999999999953

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.49  E-value=0.0022  Score=52.25  Aligned_cols=19  Identities=26%  Similarity=0.373  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|+|--
T Consensus        46 vG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          46 VGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             ECSTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCcHHHHHHHHhccc
Confidence            6999999999999999964

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.38  E-value=0.0027  Score=51.38  Aligned_cols=19  Identities=37%  Similarity=0.702  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|-.
T Consensus        38 iGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          38 LGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             ECCTTSSHHHHHHHHHTSS
T ss_pred             ECCCCChHHHHHHHHHcCC
Confidence            6999999999999999964

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=95.37  E-value=0.0026  Score=51.49  Aligned_cols=19  Identities=37%  Similarity=0.705  Sum_probs=17.6

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||+|.|.|-.
T Consensus        38 iGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          38 IGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             ECSTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCcHHHHHHHHhCCC
Confidence            6999999999999999964

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.37  E-value=0.0022  Score=52.37  Aligned_cols=19  Identities=32%  Similarity=0.441  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      ||++|+|||||++.|+|--
T Consensus        47 vG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          47 VGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             EECTTSSHHHHHHHHTTTT
T ss_pred             ECCCCChHHHHHHHHhccc
Confidence            6999999999999999953

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=95.24  E-value=0.0031  Score=51.03  Aligned_cols=19  Identities=37%  Similarity=0.702  Sum_probs=17.6

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|-.
T Consensus        35 iG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          35 LGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             ECSTTSSHHHHHHHHHTSS
T ss_pred             ECCCCChHHHHHHHHhcCC
Confidence            6999999999999999965

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.18  E-value=0.0034  Score=50.77  Aligned_cols=19  Identities=37%  Similarity=0.513  Sum_probs=17.6

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|-.
T Consensus        30 iGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          30 LGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             ECCTTSSHHHHHHHHHTSS
T ss_pred             ECCCCChHHHHHHHHHcCC
Confidence            6999999999999999964

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=95.15  E-value=0.0034  Score=50.69  Aligned_cols=19  Identities=32%  Similarity=0.482  Sum_probs=17.7

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||+|.|.|..
T Consensus        34 vG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          34 IGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             ECCTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCCHHHHHHHHhcCC
Confidence            6999999999999999975

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=95.08  E-value=0.0023  Score=51.40  Aligned_cols=19  Identities=32%  Similarity=0.501  Sum_probs=17.6

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|-.
T Consensus        32 iGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          32 LGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             ECCCTHHHHHHHHHHHTSS
T ss_pred             ECCCCCcHHHHHHHHhcCc
Confidence            6999999999999999964

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.07  E-value=0.003  Score=52.33  Aligned_cols=19  Identities=42%  Similarity=0.618  Sum_probs=17.4

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|+|.-
T Consensus        68 vG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          68 TGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             EESTTSSHHHHHHHHHTSS
T ss_pred             ECCCCChHHHHHHHHhCCC
Confidence            6999999999999999964

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.00  E-value=0.0039  Score=50.84  Aligned_cols=19  Identities=42%  Similarity=0.643  Sum_probs=17.6

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|-.
T Consensus        36 iG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          36 IGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             ECSTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCcHHHHHHHHHCCC
Confidence            6999999999999999974

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.93  E-value=0.0043  Score=50.73  Aligned_cols=19  Identities=32%  Similarity=0.406  Sum_probs=17.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||+++|.|-.
T Consensus        34 iG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          34 IGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             ECCTTSSHHHHHHHHTTSS
T ss_pred             ECCCCCcHHHHHHHHHcCc
Confidence            6999999999999999964

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=94.68  E-value=0.0032  Score=51.40  Aligned_cols=19  Identities=37%  Similarity=0.385  Sum_probs=17.3

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|+|--
T Consensus        50 vG~sGsGKSTLl~ll~gl~   68 (255)
T d2hyda1          50 VGMSGGGKSTLINLIPRFY   68 (255)
T ss_dssp             ECSTTSSHHHHHTTTTTSS
T ss_pred             ECCCCCcHHHHHHHHHhcC
Confidence            6999999999999999864

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=94.60  E-value=0.0046  Score=46.37  Aligned_cols=18  Identities=33%  Similarity=0.455  Sum_probs=16.0

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|.+|+|||||++.|...
T Consensus        13 ~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2          13 LGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             ECCTTSHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999999753

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.48  E-value=0.0019  Score=49.88  Aligned_cols=19  Identities=32%  Similarity=0.567  Sum_probs=16.8

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++||||+||++.|+.+.
T Consensus         7 ~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           7 SGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             ECCTTSSHHHHHHHHHHHC
T ss_pred             ECCCCCCHHHHHHHHHHhC
Confidence            5999999999999998653

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.44  E-value=0.0032  Score=50.99  Aligned_cols=19  Identities=32%  Similarity=0.599  Sum_probs=17.6

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      +|++|+|||||++.|.|-.
T Consensus        37 iG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          37 LGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             ECSCHHHHHHHHHHHHTSS
T ss_pred             ECCCCCcHHHHHHHHHcCc
Confidence            6999999999999999964

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.36  E-value=0.0083  Score=43.80  Aligned_cols=18  Identities=33%  Similarity=0.512  Sum_probs=15.6

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      .|.+||||||+++.|...
T Consensus         8 ~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           8 IGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            499999999999998643

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.29  E-value=0.0075  Score=45.14  Aligned_cols=18  Identities=17%  Similarity=0.344  Sum_probs=16.0

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|.+|||||||++.|+.+
T Consensus         7 ~G~~gSGKTTli~~l~~~   24 (165)
T d1xjca_           7 VGYKHSGKTTLMEKWVAA   24 (165)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHHHH
Confidence            599999999999999853

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=94.01  E-value=0.0088  Score=44.37  Aligned_cols=17  Identities=29%  Similarity=0.513  Sum_probs=15.2

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|.+||||||+.+.|..
T Consensus        10 ~G~pGsGKTTia~~La~   26 (173)
T d1rkba_          10 TGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999964

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.86  E-value=0.012  Score=45.92  Aligned_cols=74  Identities=22%  Similarity=0.313  Sum_probs=41.2

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH---HHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVNYHAIQLIKR---FLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~~~~~~~i~~---~l~~~~~d   77 (265)
                      ||++|||||+++..|...-..  +..+          -...+..+.-+|+..+..+.....++-+.++.   .+....-+
T Consensus        49 vG~pGVGKTalv~~LA~ri~~--~~vp----------~~L~~~~i~~ld~~~LiAg~~~rG~~E~rl~~il~e~~~~~~~  116 (195)
T d1jbka_          49 IGEPGVGKTAIVEGLAQRIIN--GEVP----------EGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGN  116 (195)
T ss_dssp             ECCTTSCHHHHHHHHHHHHHH--TCSC----------GGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTT
T ss_pred             EecCCcccHHHHHHHHHHHHh--CCCC----------HHHcCceEEEeeHHHHhccCCccHHHHHHHHHHHHHHhcCCCc
Confidence            699999999999888764321  1111          11333556677776665433222222222332   22334558


Q ss_pred             EEEEEEecC
Q 024586           78 VLLYVDRLD   86 (265)
Q Consensus        78 ~iL~V~~~d   86 (265)
                      +|||++.+.
T Consensus       117 iILfIDeih  125 (195)
T d1jbka_         117 VILFIDELH  125 (195)
T ss_dssp             EEEEEETGG
T ss_pred             EEEEcchHH
Confidence            999996543

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.74  E-value=0.011  Score=45.52  Aligned_cols=17  Identities=18%  Similarity=0.255  Sum_probs=15.6

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|.+||||||+.+.|..
T Consensus         8 ~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           8 VGLPARGKTYISKKLTR   24 (213)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999999985

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=93.71  E-value=0.02  Score=46.79  Aligned_cols=51  Identities=16%  Similarity=0.180  Sum_probs=31.3

Q ss_pred             HHHHHHHHhcCCccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCCC
Q 024586           64 IQLIKRFLLNKTIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLSL  124 (265)
Q Consensus        64 ~~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~~  124 (265)
                      .+.+.+.+  ..+|+||+|.+.-. -++..+..+.+.+    .   .+|.|+|+||+|+.+
T Consensus         6 ~r~i~~~i--~~~DvIl~V~DaR~-P~ss~~~~l~~~~----~---~Kp~IlVlNK~DLv~   56 (273)
T d1puja_           6 RREVTEKL--KLIDIVYELVDARI-PMSSRNPMIEDIL----K---NKPRIMLLNKADKAD   56 (273)
T ss_dssp             HHHHHHHG--GGCSEEEEEEETTS-TTTTSCHHHHHHC----S---SSCEEEEEECGGGSC
T ss_pred             HHHHHHHH--HhCCEEEEEEECCC-CCCCCCHHHHHHH----c---CCCeEEEEECccCCc
Confidence            34444444  37899999954321 1444444333333    2   289999999999974

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=93.60  E-value=0.014  Score=43.09  Aligned_cols=18  Identities=39%  Similarity=0.680  Sum_probs=16.0

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      .|.+||||||+++.|...
T Consensus         8 ~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           8 TGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999999854

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.59  E-value=0.023  Score=46.41  Aligned_cols=71  Identities=18%  Similarity=0.314  Sum_probs=36.5

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCCCc---HHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGYVN---YHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~~~---~~~~~~i~~~l~~~~~d   77 (265)
                      ||++|||||+++..|...-.  .+..+          ....+..+.-+|+..+..+....   ++.+..+-..+. ...+
T Consensus        45 VG~~GvGKTalv~~la~ri~--~~~vp----------~~l~~~~i~~l~~~~liag~~~~g~~e~r~~~i~~~~~-~~~~  111 (268)
T d1r6bx2          45 VGESGVGKTAIAEGLAWRIV--QGDVP----------EVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLE-QDTN  111 (268)
T ss_dssp             ECCTTSSHHHHHHHHHHHHH--HTCSC----------GGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHS-SSSC
T ss_pred             ECCCCCcHHHHHHHHHHHHH--hCCcc----------cccccceeEEeeechHhccCccchhHHHHHHHHHHHhh-ccCC
Confidence            69999999999999886432  11111          11233455566766665542222   233333332222 2446


Q ss_pred             EEEEEEe
Q 024586           78 VLLYVDR   84 (265)
Q Consensus        78 ~iL~V~~   84 (265)
                      ++||++.
T Consensus       112 iIlfiDe  118 (268)
T d1r6bx2         112 SILFIDE  118 (268)
T ss_dssp             EEEEETT
T ss_pred             ceEEecc
Confidence            7888844

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=93.38  E-value=0.013  Score=42.60  Aligned_cols=18  Identities=28%  Similarity=0.438  Sum_probs=15.6

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|.+||||||+...|...
T Consensus         8 ~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           8 VGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             ECCTTSCHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999998653

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=93.33  E-value=0.014  Score=43.43  Aligned_cols=18  Identities=39%  Similarity=0.573  Sum_probs=15.8

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      .|.+||||||+.+.|...
T Consensus        11 ~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_          11 TGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHHHH
Confidence            499999999999999753

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=93.22  E-value=0.14  Score=41.10  Aligned_cols=18  Identities=39%  Similarity=0.665  Sum_probs=16.0

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      .|++|+|||+++++|..+
T Consensus        51 ~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          51 VGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             ECCTTSCHHHHHHHHHHH
T ss_pred             eCCCCCCccHHHHHHHHH
Confidence            399999999999999864

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.17  E-value=0.015  Score=44.12  Aligned_cols=16  Identities=25%  Similarity=0.387  Sum_probs=14.7

Q ss_pred             CCCCCCHHHHHHHHhC
Q 024586            2 GKGGVGKSSTVNSIIG   17 (265)
Q Consensus         2 G~tg~GKSSliN~llg   17 (265)
                      |.+||||||+.+.|..
T Consensus        29 G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          29 GLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             ECTTSSHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            8999999999999874

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.11  E-value=0.016  Score=43.16  Aligned_cols=18  Identities=28%  Similarity=0.453  Sum_probs=15.8

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      .|++|+|||||+..+...
T Consensus         7 tG~~GtGKTtl~~~i~~~   24 (189)
T d2i3ba1           7 TGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             ESCCSSCHHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHHH
Confidence            499999999999999853

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=93.06  E-value=0.015  Score=43.21  Aligned_cols=18  Identities=28%  Similarity=0.453  Sum_probs=15.9

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      .|.+||||||+.+.|...
T Consensus        10 ~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1          10 SGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EECTTSCHHHHHHHHHTC
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999999764

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=93.02  E-value=0.016  Score=42.97  Aligned_cols=17  Identities=18%  Similarity=0.192  Sum_probs=15.1

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|.+||||||+...|..
T Consensus        12 ~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3          12 TGYMNSGKDAIARALQV   28 (183)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999988874

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=93.01  E-value=0.009  Score=45.16  Aligned_cols=16  Identities=38%  Similarity=0.702  Sum_probs=14.6

Q ss_pred             CCCCCCCHHHHHHHHh
Q 024586            1 MGKGGVGKSSTVNSII   16 (265)
Q Consensus         1 vG~tg~GKSSliN~ll   16 (265)
                      +|++|+||||++.+|.
T Consensus        30 ~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          30 SGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HSCCSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            5999999999999985

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=93.01  E-value=0.044  Score=47.10  Aligned_cols=74  Identities=18%  Similarity=0.317  Sum_probs=35.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCCCCCC---CcHHHHHHHHHHHhcCCcc
Q 024586            1 MGKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLIEGGY---VNYHAIQLIKRFLLNKTID   77 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~~~~~---~~~~~~~~i~~~l~~~~~d   77 (265)
                      ||++|||||+++..|...-+  .+..+.          ...+..+.-+|.-.+..+..   ..++.+..+-..+.....+
T Consensus        49 vG~~GvGKtaiv~~la~~i~--~~~vp~----------~l~~~~i~~ld~~~l~ag~~~~g~~e~r~~~i~~~~~~~~~~  116 (387)
T d1qvra2          49 IGEPGVGKTAIVEGLAQRIV--KGDVPE----------GLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGE  116 (387)
T ss_dssp             EECTTSCHHHHHHHHHHHHH--HTCSCT----------TSTTCEEEEECC-----------CHHHHHHHHHHHHHTTCSS
T ss_pred             ECCCCCCHHHHHHHHHHHHH--hCCCCH----------HHcCceEEEeeHhhhhcccCcchhHHHHHHHHHHHhccCCCc
Confidence            69999999999987775321  111111          12334555667666554322   1223333333333334457


Q ss_pred             EEEEEEecC
Q 024586           78 VLLYVDRLD   86 (265)
Q Consensus        78 ~iL~V~~~d   86 (265)
                      +|||++.+.
T Consensus       117 ~ilfide~h  125 (387)
T d1qvra2         117 VILFIDELH  125 (387)
T ss_dssp             EEEEECCC-
T ss_pred             eEEEeccHH
Confidence            889985443

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=92.72  E-value=0.022  Score=42.09  Aligned_cols=17  Identities=29%  Similarity=0.421  Sum_probs=15.5

Q ss_pred             CCCCCCHHHHHHHHhCC
Q 024586            2 GKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         2 G~tg~GKSSliN~llg~   18 (265)
                      |.+||||||+.+.|...
T Consensus        10 G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_          10 GGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CCTTSSHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHH
Confidence            99999999999998864

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=92.61  E-value=0.023  Score=42.34  Aligned_cols=16  Identities=25%  Similarity=0.484  Sum_probs=14.4

Q ss_pred             CCCCCCCHHHHHHHHh
Q 024586            1 MGKGGVGKSSTVNSII   16 (265)
Q Consensus         1 vG~tg~GKSSliN~ll   16 (265)
                      .|.+||||||+++.|.
T Consensus         7 ~G~~GsGKsT~~~~L~   22 (190)
T d1khta_           7 TGVPGVGSTTSSQLAM   22 (190)
T ss_dssp             ECCTTSCHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            3999999999999885

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.58  E-value=0.033  Score=43.42  Aligned_cols=16  Identities=13%  Similarity=0.318  Sum_probs=14.0

Q ss_pred             CCCCCCHHHHHHHHhC
Q 024586            2 GKGGVGKSSTVNSIIG   17 (265)
Q Consensus         2 G~tg~GKSSliN~llg   17 (265)
                      |++|+||||++..+..
T Consensus        31 Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          31 ALPGMGDDALIYALSR   46 (207)
T ss_dssp             CCTTSCHHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHH
Confidence            9999999999986654

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=92.57  E-value=0.02  Score=42.35  Aligned_cols=18  Identities=33%  Similarity=0.595  Sum_probs=15.7

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|.+|+||||+...|...
T Consensus        12 ~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_          12 MGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             ECSTTSCHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999998753

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.93  E-value=0.028  Score=42.50  Aligned_cols=17  Identities=29%  Similarity=0.444  Sum_probs=15.2

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|.+||||||++..++.
T Consensus        20 ~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          20 VGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             ECCTTSSHHHHHHHHTG
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999998864

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=91.85  E-value=0.025  Score=47.50  Aligned_cols=19  Identities=32%  Similarity=0.454  Sum_probs=16.8

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      .|.+|+||||++|+|++.-
T Consensus       172 ~G~tgSGKTT~l~al~~~i  190 (323)
T d1g6oa_         172 CGGTGSGKTTYIKSIMEFI  190 (323)
T ss_dssp             EESTTSSHHHHHHHHGGGS
T ss_pred             EeeccccchHHHHHHhhhc
Confidence            4899999999999999753

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.64  E-value=0.035  Score=42.98  Aligned_cols=16  Identities=38%  Similarity=0.501  Sum_probs=14.5

Q ss_pred             CCCCCCHHHHHHHHhC
Q 024586            2 GKGGVGKSSTVNSIIG   17 (265)
Q Consensus         2 G~tg~GKSSliN~llg   17 (265)
                      |.+||||||+.+.|..
T Consensus         9 G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           9 GGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CSTTSSHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            8999999999998864

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.51  E-value=0.032  Score=41.48  Aligned_cols=17  Identities=29%  Similarity=0.407  Sum_probs=15.0

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|.+||||||+...|..
T Consensus         7 iG~~G~GKSTig~~La~   23 (165)
T d2iyva1           7 VGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999988864

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.47  E-value=0.034  Score=42.62  Aligned_cols=18  Identities=33%  Similarity=0.612  Sum_probs=16.0

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|++||||||+++.|+..
T Consensus         6 ~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           6 SGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHh
Confidence            599999999999999754

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.40  E-value=0.015  Score=44.03  Aligned_cols=17  Identities=24%  Similarity=0.413  Sum_probs=15.1

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|.+||||||+.+.|..
T Consensus        25 ~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          25 TGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             ESSCHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999864

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=91.29  E-value=0.035  Score=41.50  Aligned_cols=17  Identities=18%  Similarity=0.390  Sum_probs=15.0

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|.+||||||+.+.|..
T Consensus         8 ~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           8 VGARGCGMTTVGRELAR   24 (170)
T ss_dssp             ESCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999999853

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.08  E-value=0.41  Score=37.22  Aligned_cols=17  Identities=24%  Similarity=0.544  Sum_probs=14.9

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      .|++|+||||++.++..
T Consensus        39 ~Gp~G~GKTt~~~~la~   55 (252)
T d1sxje2          39 YGPNGTGKKTRCMALLE   55 (252)
T ss_dssp             ECSTTSSHHHHHHTHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            39999999999988765

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=91.06  E-value=0.036  Score=41.44  Aligned_cols=16  Identities=38%  Similarity=0.588  Sum_probs=14.5

Q ss_pred             CCCCCCHHHHHHHHhC
Q 024586            2 GKGGVGKSSTVNSIIG   17 (265)
Q Consensus         2 G~tg~GKSSliN~llg   17 (265)
                      |.+||||||+++.|..
T Consensus         8 G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           8 GIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             ECTTSCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            8999999999999963

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=91.02  E-value=0.039  Score=40.97  Aligned_cols=17  Identities=29%  Similarity=0.442  Sum_probs=15.0

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|.+||||||+...|..
T Consensus         6 iG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           6 IGFMGSGKSTLARALAK   22 (161)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999988864

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.76  E-value=0.042  Score=41.14  Aligned_cols=17  Identities=35%  Similarity=0.673  Sum_probs=14.9

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|.+||||||++..|..
T Consensus         6 ~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           6 MGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999998843

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=90.62  E-value=0.037  Score=42.14  Aligned_cols=17  Identities=29%  Similarity=0.603  Sum_probs=15.2

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|++||||||++..|..
T Consensus        12 ~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_          12 LGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999998875

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=90.54  E-value=0.042  Score=43.29  Aligned_cols=18  Identities=33%  Similarity=0.586  Sum_probs=16.0

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      .|++|+||||+++++.++
T Consensus        41 ~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          41 FGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             ECCTTSCHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            399999999999999864

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=90.31  E-value=0.039  Score=41.86  Aligned_cols=17  Identities=24%  Similarity=0.276  Sum_probs=14.9

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|++|+||||++..|..
T Consensus         9 ~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           9 SGAPASGKGTQCELIKT   25 (189)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999998864

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=89.84  E-value=0.057  Score=40.63  Aligned_cols=18  Identities=33%  Similarity=0.652  Sum_probs=15.7

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|.+||||||++..|...
T Consensus         6 ~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           6 MGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999888753

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.67  E-value=0.048  Score=41.46  Aligned_cols=17  Identities=29%  Similarity=0.380  Sum_probs=15.1

Q ss_pred             CCCCCCHHHHHHHHhCC
Q 024586            2 GKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         2 G~tg~GKSSliN~llg~   18 (265)
                      |..||||||+++.|...
T Consensus        16 G~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1          16 GNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             CSTTSCHHHHHHTTGGG
T ss_pred             CCCCCCHHHHHHHHHHH
Confidence            88999999999998753

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=89.67  E-value=0.045  Score=43.57  Aligned_cols=18  Identities=39%  Similarity=0.530  Sum_probs=16.2

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      .|++|+||||++.+|.++
T Consensus        38 ~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          38 GGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             ECCTTSCTHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999999875

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=89.65  E-value=0.07  Score=42.36  Aligned_cols=18  Identities=22%  Similarity=0.549  Sum_probs=16.1

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      .|++|+|||+++++++..
T Consensus        52 ~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          52 IGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             TTCCSSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            399999999999999864

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.49  E-value=0.063  Score=40.30  Aligned_cols=17  Identities=24%  Similarity=0.487  Sum_probs=15.1

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|.+||||||+...|..
T Consensus         6 ~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           6 LGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999999864

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=89.39  E-value=0.064  Score=40.59  Aligned_cols=17  Identities=24%  Similarity=0.507  Sum_probs=15.3

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|.+||||||+...|..
T Consensus         9 ~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           9 LGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999998874

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=89.29  E-value=0.073  Score=41.72  Aligned_cols=18  Identities=33%  Similarity=0.562  Sum_probs=15.8

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      .|++|+||||+++.|..+
T Consensus        41 ~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          41 AGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             ESSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHhc
Confidence            399999999999998764

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=88.84  E-value=0.085  Score=41.04  Aligned_cols=17  Identities=24%  Similarity=0.253  Sum_probs=15.2

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      .|.||+||||+.+.|..
T Consensus        30 tGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          30 TGLSASGKSTLAVELEH   46 (208)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999999874

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.82  E-value=0.074  Score=40.41  Aligned_cols=18  Identities=22%  Similarity=0.623  Sum_probs=15.9

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|++||||||+...|...
T Consensus        14 ~GppGSGKsT~a~~La~~   31 (196)
T d1ukza_          14 LGGPGAGKGTQCEKLVKD   31 (196)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999999763

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=88.63  E-value=0.089  Score=41.45  Aligned_cols=18  Identities=28%  Similarity=0.547  Sum_probs=15.7

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      .|++|+|||++++.|...
T Consensus        49 ~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          49 LGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            499999999999998853

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=88.46  E-value=0.086  Score=45.32  Aligned_cols=18  Identities=39%  Similarity=0.525  Sum_probs=16.3

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      .|+||+||||++.+++..
T Consensus       164 tGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         164 TGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             ECSTTSCHHHHHHHHHHH
T ss_pred             EcCCCCCccHHHHHHhhh
Confidence            399999999999999974

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=88.46  E-value=0.092  Score=40.94  Aligned_cols=18  Identities=33%  Similarity=0.554  Sum_probs=16.0

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      .|++|+||||++..|..+
T Consensus        51 ~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          51 AGPPGVGKTTAALALARE   68 (231)
T ss_dssp             ESCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCcHHHHHHHHHHH
Confidence            399999999999998874

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=88.43  E-value=0.051  Score=44.29  Aligned_cols=15  Identities=40%  Similarity=0.807  Sum_probs=14.0

Q ss_pred             CCCCCCCHHHHHHHH
Q 024586            1 MGKGGVGKSSTVNSI   15 (265)
Q Consensus         1 vG~tg~GKSSliN~l   15 (265)
                      +|+.|+||||++.+|
T Consensus        30 vG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          30 VGPNGSGKSNIIDAI   44 (308)
T ss_dssp             ECCTTTCSTHHHHHH
T ss_pred             ECCCCCcHHHHHHHH
Confidence            699999999999888

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.37  E-value=0.07  Score=40.60  Aligned_cols=18  Identities=28%  Similarity=0.577  Sum_probs=15.8

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|++||||||++..|...
T Consensus        14 ~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_          14 VGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             EECTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999998754

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=88.21  E-value=0.56  Score=37.73  Aligned_cols=17  Identities=24%  Similarity=0.419  Sum_probs=14.4

Q ss_pred             CCCCCCHHHHHHHHhCC
Q 024586            2 GKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         2 G~tg~GKSSliN~llg~   18 (265)
                      |++|+|||+++-.+...
T Consensus        64 G~~~sGKT~l~l~~~~~   80 (268)
T d1xp8a1          64 GPESGGKTTLALAIVAQ   80 (268)
T ss_dssp             ESTTSSHHHHHHHHHHH
T ss_pred             cCCccchHHHHHHHHHH
Confidence            89999999999777753

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.20  E-value=0.079  Score=44.80  Aligned_cols=15  Identities=40%  Similarity=0.793  Sum_probs=14.2

Q ss_pred             CCCCCCCHHHHHHHH
Q 024586            1 MGKGGVGKSSTVNSI   15 (265)
Q Consensus         1 vG~tg~GKSSliN~l   15 (265)
                      +|++|+|||+++.||
T Consensus        31 ~G~NGsGKS~ileAi   45 (427)
T d1w1wa_          31 IGPNGSGKSNMMDAI   45 (427)
T ss_dssp             ECSTTSSHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHH
Confidence            599999999999998

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.09  E-value=0.088  Score=39.79  Aligned_cols=17  Identities=29%  Similarity=0.606  Sum_probs=15.0

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|++||||||....|..
T Consensus         7 ~GppGSGKsT~a~~La~   23 (194)
T d1teva_           7 LGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999988864

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=87.98  E-value=0.073  Score=39.81  Aligned_cols=17  Identities=24%  Similarity=0.386  Sum_probs=15.0

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|.+||||||....|..
T Consensus         6 ~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           6 LGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999988864

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.82  E-value=0.11  Score=40.99  Aligned_cols=19  Identities=26%  Similarity=0.515  Sum_probs=16.7

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      .|++|+||||++.+|..+-
T Consensus        58 ~GPpG~GKTt~a~~la~~~   76 (253)
T d1sxja2          58 YGPPGIGKTTAAHLVAQEL   76 (253)
T ss_dssp             ECSTTSSHHHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHHHH
Confidence            3999999999999998753

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.77  E-value=0.11  Score=40.44  Aligned_cols=17  Identities=41%  Similarity=0.645  Sum_probs=15.4

Q ss_pred             CCCCCCHHHHHHHHhCC
Q 024586            2 GKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         2 G~tg~GKSSliN~llg~   18 (265)
                      |++|+||||++..+..+
T Consensus        40 Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          40 GPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CSTTSSHHHHHHHHHHH
T ss_pred             CCCCCChHHHHHHHHHH
Confidence            99999999999998864

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.32  E-value=0.11  Score=39.04  Aligned_cols=17  Identities=24%  Similarity=0.501  Sum_probs=15.3

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|.+||||||+...|..
T Consensus         8 ~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           8 IGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             ECCTTSSHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            59999999999999865

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=87.18  E-value=0.11  Score=39.51  Aligned_cols=18  Identities=33%  Similarity=0.530  Sum_probs=15.9

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|.+||||||+...|...
T Consensus        12 iG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1          12 MGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            599999999999998853

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=87.08  E-value=0.1  Score=41.10  Aligned_cols=17  Identities=35%  Similarity=0.411  Sum_probs=14.9

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      .|++|+|||||++.++.
T Consensus        35 ~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          35 LGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EESTTSSHHHHHHHHHH
T ss_pred             EcCCCCcHHHHHHHHHH
Confidence            39999999999998864

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=86.99  E-value=0.62  Score=37.30  Aligned_cols=17  Identities=24%  Similarity=0.407  Sum_probs=13.9

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      .|++|+|||+++-.+..
T Consensus        60 ~G~~gsGKTtl~l~~~~   76 (263)
T d1u94a1          60 YGPESSGKTTLTLQVIA   76 (263)
T ss_dssp             ECSTTSSHHHHHHHHHH
T ss_pred             ecCCCcHHHHHHHHHHH
Confidence            38999999999866654

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.59  E-value=0.14  Score=39.73  Aligned_cols=17  Identities=35%  Similarity=0.716  Sum_probs=14.9

Q ss_pred             CCCCCCHHHHHHHHhCC
Q 024586            2 GKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         2 G~tg~GKSSliN~llg~   18 (265)
                      |++|+||||+++.+..+
T Consensus        43 Gp~G~GKTt~a~~la~~   59 (224)
T d1sxjb2          43 GMPGIGKTTSVHCLAHE   59 (224)
T ss_dssp             CSTTSSHHHHHHHHHHH
T ss_pred             CCCCCCchhhHHHHHHH
Confidence            99999999999888653

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=86.56  E-value=0.12  Score=42.64  Aligned_cols=18  Identities=28%  Similarity=0.494  Sum_probs=16.2

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      +|+||+|||.|.++|.+.
T Consensus        55 ~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          55 IGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHhhc
Confidence            599999999999999864

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=86.13  E-value=0.91  Score=33.44  Aligned_cols=51  Identities=20%  Similarity=0.162  Sum_probs=32.2

Q ss_pred             CCCCCCHHHHHHHHhCCCcccccCCCCCCCccEEEEeeeCCeEEEEEeCCCCC
Q 024586            2 GKGGVGKSSTVNSIIGEKAVTVSTFQSEGPRPVMVSRSRAGFTLNIVDTPGLI   54 (265)
Q Consensus         2 G~tg~GKSSliN~llg~~~~~~~~~~~~t~~~~~~~~~~~g~~v~iiDTPG~~   54 (265)
                      |.-|+||||++..++..-. ......+.|-... ......+..+.=+|.==+.
T Consensus        40 G~LGaGKTtfvr~~~~~lg-~~~~V~SPTF~l~-~~Y~~~~~~i~H~DlYRl~   90 (158)
T d1htwa_          40 GDLGAGKTTLTRGMLQGIG-HQGNVKSPTYTLV-EEYNIAGKMIYHFDLYRLA   90 (158)
T ss_dssp             CSTTSSHHHHHHHHHHHTT-CCSCCCCCTTTCE-EEEEETTEEEEEEECTTCS
T ss_pred             cCCCccHHHHHHHHHhhcc-cccccCCCceEEE-EeeccCCceEEEEEEeccC
Confidence            8889999999999985432 2223344444332 2334567788888875543

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.11  E-value=1.1  Score=35.87  Aligned_cols=15  Identities=20%  Similarity=0.370  Sum_probs=12.7

Q ss_pred             CCCCCCHHHHHHHHh
Q 024586            2 GKGGVGKSSTVNSII   16 (265)
Q Consensus         2 G~tg~GKSSliN~ll   16 (265)
                      |++|+|||+++-.+.
T Consensus        67 G~~~~GKT~l~l~~~   81 (269)
T d1mo6a1          67 GPESSGKTTVALHAV   81 (269)
T ss_dssp             CSSSSSHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHHH
Confidence            899999999986555

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=86.06  E-value=0.15  Score=40.67  Aligned_cols=18  Identities=28%  Similarity=0.316  Sum_probs=15.9

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      .|++|+|||+++++|.++
T Consensus        46 ~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          46 EGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             ECSTTSSHHHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHhhc
Confidence            499999999999999763

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=85.38  E-value=0.14  Score=38.54  Aligned_cols=17  Identities=29%  Similarity=0.391  Sum_probs=14.5

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      .|.+||||||+.+.|-.
T Consensus         9 tG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           9 TGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             EECTTSCHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            38999999999998753

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=85.26  E-value=1.5  Score=34.24  Aligned_cols=45  Identities=13%  Similarity=0.062  Sum_probs=26.0

Q ss_pred             CccEEEEEEecCCcCCCHHHHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           75 TIDVLLYVDRLDVYRVDNLDKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        75 ~~d~iL~V~~~d~~r~~~~d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      .+|.+++|+.+....+...-  +=+.|.-....+  .+.++|+||+|+.
T Consensus        10 NiD~~~iV~s~~~P~~~~~~--idR~Lv~a~~~~--i~pvIvlnK~DL~   54 (231)
T d1t9ha2          10 NVDQAVLVFSAVQPSFSTAL--LDRFLVLVEAND--IQPIICITKMDLI   54 (231)
T ss_dssp             CCCEEEEEEESTTTTCCHHH--HHHHHHHHHTTT--CEEEEEEECGGGC
T ss_pred             ccCEEEEEEECCCCCCCHHH--HHHHHHHHHHcC--CCEEEEEeccccc
Confidence            67988888665432333222  112222222222  6889999999996

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.90  E-value=0.18  Score=38.23  Aligned_cols=16  Identities=38%  Similarity=0.698  Sum_probs=14.3

Q ss_pred             CCCCCCHHHHHHHHhC
Q 024586            2 GKGGVGKSSTVNSIIG   17 (265)
Q Consensus         2 G~tg~GKSSliN~llg   17 (265)
                      |.-||||||++..|..
T Consensus         7 G~dGsGKST~~~~L~~   22 (208)
T d1gsia_           7 GVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             CSTTSSHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            8899999999998874

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.83  E-value=0.19  Score=38.89  Aligned_cols=17  Identities=41%  Similarity=0.659  Sum_probs=15.4

Q ss_pred             CCCCCCHHHHHHHHhCC
Q 024586            2 GKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         2 G~tg~GKSSliN~llg~   18 (265)
                      |++|+||||++..|..+
T Consensus        42 Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          42 GPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CSSSSSHHHHHHHHHHH
T ss_pred             CCCCCChhHHHHHHHHH
Confidence            99999999999999864

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.68  E-value=0.2  Score=37.49  Aligned_cols=18  Identities=17%  Similarity=0.287  Sum_probs=15.5

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      .|++|+|||++...++..
T Consensus        29 ~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          29 FGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHHHH
Confidence            499999999999888754

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.47  E-value=0.16  Score=40.83  Aligned_cols=19  Identities=32%  Similarity=0.441  Sum_probs=16.7

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      .|++|+|||++++++.++-
T Consensus        47 ~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          47 YGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             BCCTTSSHHHHHHHHHHHT
T ss_pred             ECCCCCcchhHHHHHHHHh
Confidence            3999999999999998753

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=84.42  E-value=0.2  Score=39.92  Aligned_cols=18  Identities=39%  Similarity=0.737  Sum_probs=16.2

Q ss_pred             CCCCCCCHHHHHHHHhCC
Q 024586            1 MGKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~   18 (265)
                      .|++|+|||+++++|.++
T Consensus        48 ~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          48 VGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             ECCTTSSHHHHHHHHHHH
T ss_pred             ecCCCCChhHHHHHHHHH
Confidence            399999999999999964

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=84.27  E-value=0.17  Score=41.91  Aligned_cols=16  Identities=38%  Similarity=0.503  Sum_probs=14.0

Q ss_pred             CCCCCCHHHHHHHHhC
Q 024586            2 GKGGVGKSSTVNSIIG   17 (265)
Q Consensus         2 G~tg~GKSSliN~llg   17 (265)
                      |.+||||||+.+.|..
T Consensus        87 G~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          87 GSVAVGKSTTARVLQA  102 (308)
T ss_dssp             ECTTSSHHHHHHHHHH
T ss_pred             CCCCCCCcHHHHHHHH
Confidence            8999999999988753

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=84.21  E-value=0.18  Score=38.18  Aligned_cols=19  Identities=32%  Similarity=0.655  Sum_probs=16.5

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      .|++|+||||+...|...-
T Consensus        21 ~G~sG~GKS~lal~l~~~G   39 (177)
T d1knxa2          21 TGRSGIGKSECALDLINKN   39 (177)
T ss_dssp             EESSSSSHHHHHHHHHTTT
T ss_pred             EcCCCCCHHHHHHHHHHcC
Confidence            3899999999999998654

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=83.81  E-value=0.22  Score=38.13  Aligned_cols=17  Identities=29%  Similarity=0.458  Sum_probs=15.2

Q ss_pred             CCCCCCHHHHHHHHhCC
Q 024586            2 GKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         2 G~tg~GKSSliN~llg~   18 (265)
                      |++||||||....|...
T Consensus        10 Gp~GsGKgT~ak~La~~   26 (223)
T d1q3ta_          10 GPASSGKSTVAKIIAKD   26 (223)
T ss_dssp             CSSCSSHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHH
Confidence            99999999999988753

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=83.69  E-value=0.24  Score=37.46  Aligned_cols=19  Identities=37%  Similarity=0.581  Sum_probs=16.3

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      .|++|+||||+.-.|+..-
T Consensus        20 ~G~sG~GKStlal~l~~~g   38 (176)
T d1kkma_          20 TGDSGVGKSETALELVQRG   38 (176)
T ss_dssp             ECCTTSCHHHHHHHHHHTT
T ss_pred             EeCCCCCHHHHHHHHHHcC
Confidence            4999999999999988653

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=83.54  E-value=0.23  Score=38.07  Aligned_cols=17  Identities=29%  Similarity=0.403  Sum_probs=14.6

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      .|..||||||+.+.|-.
T Consensus         8 TG~igSGKStv~~~l~~   24 (205)
T d1jjva_           8 TGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             ECSTTSCHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            49999999999997753

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.47  E-value=0.14  Score=39.84  Aligned_cols=16  Identities=38%  Similarity=0.416  Sum_probs=14.6

Q ss_pred             CCCCCCHHHHHHHHhC
Q 024586            2 GKGGVGKSSTVNSIIG   17 (265)
Q Consensus         2 G~tg~GKSSliN~llg   17 (265)
                      |..||||||+++.|..
T Consensus         9 G~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           9 GNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             CSTTSSHHHHHTTTGG
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            8899999999998875

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=83.34  E-value=0.28  Score=38.43  Aligned_cols=16  Identities=38%  Similarity=0.580  Sum_probs=14.2

Q ss_pred             CCCCCCHHHHHHHHhC
Q 024586            2 GKGGVGKSSTVNSIIG   17 (265)
Q Consensus         2 G~tg~GKSSliN~llg   17 (265)
                      |++|+||||++..+..
T Consensus        41 Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          41 GTRGVGKTSIARLLAK   56 (239)
T ss_dssp             CSTTSSHHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHH
Confidence            9999999999988754

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=83.26  E-value=0.21  Score=38.41  Aligned_cols=17  Identities=35%  Similarity=0.487  Sum_probs=14.7

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      .|..||||||+.+.|-.
T Consensus         9 tG~igSGKStv~~~l~~   25 (208)
T d1vhta_           9 TGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             ECCTTSCHHHHHHHHHH
T ss_pred             ECCCcCCHHHHHHHHHH
Confidence            49999999999998763

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.07  E-value=0.25  Score=39.44  Aligned_cols=19  Identities=26%  Similarity=0.480  Sum_probs=16.6

Q ss_pred             CCCCCCCHHHHHHHHhCCC
Q 024586            1 MGKGGVGKSSTVNSIIGEK   19 (265)
Q Consensus         1 vG~tg~GKSSliN~llg~~   19 (265)
                      .|++|+|||++++++.++-
T Consensus        44 ~GppGtGKT~l~~ala~~~   62 (258)
T d1e32a2          44 YGPPGTGKTLIARAVANET   62 (258)
T ss_dssp             ECCTTSSHHHHHHHHHHHT
T ss_pred             ecCCCCCchHHHHHHHHHh
Confidence            3999999999999998853

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=82.77  E-value=1.3  Score=34.49  Aligned_cols=43  Identities=14%  Similarity=0.221  Sum_probs=26.1

Q ss_pred             CccEEEEEEecCCcCCCHH--HHHHHHHHHHhcCcCcCCcEEEEEeCccCC
Q 024586           75 TIDVLLYVDRLDVYRVDNL--DKQITRAITDNFGEQIWKRALIVLTHAQLS  123 (265)
Q Consensus        75 ~~d~iL~V~~~d~~r~~~~--d~~~l~~l~~~~g~~~~~~~ivV~tk~D~~  123 (265)
                      .+|.+++|+.++...++..  |+.++- ... .|    .+.++|+||+|+.
T Consensus        10 NiD~vliV~s~~~P~~~~~~ldR~Lv~-a~~-~~----i~pvIvlnK~DL~   54 (225)
T d1u0la2          10 NVDQVILVVTVKMPETSTYIIDKFLVL-AEK-NE----LETVMVINKMDLY   54 (225)
T ss_dssp             SCCEEEEEECSSTTCCCHHHHHHHHHH-HHH-TT----CEEEEEECCGGGC
T ss_pred             cCCEEEEEEeCCCCCCCHHHHHHHHHH-HHH-cC----CCEEEEEeCcccC
Confidence            6798888876654334433  222221 111 11    7889999999995

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.43  E-value=0.22  Score=38.75  Aligned_cols=16  Identities=38%  Similarity=0.445  Sum_probs=14.4

Q ss_pred             CCCCCCHHHHHHHHhC
Q 024586            2 GKGGVGKSSTVNSIIG   17 (265)
Q Consensus         2 G~tg~GKSSliN~llg   17 (265)
                      |.-||||||+++.|..
T Consensus         9 G~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           9 GNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             ECTTSSHHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHH
Confidence            7889999999999974

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.37  E-value=0.27  Score=40.08  Aligned_cols=16  Identities=44%  Similarity=0.468  Sum_probs=13.9

Q ss_pred             CCCCCCHHHHHHHHhC
Q 024586            2 GKGGVGKSSTVNSIIG   17 (265)
Q Consensus         2 G~tg~GKSSliN~llg   17 (265)
                      |.+|||||||...|..
T Consensus        34 G~qGSGKSTl~~~l~~   49 (286)
T d1odfa_          34 GPQGSGKSFTSIQIYN   49 (286)
T ss_dssp             CCTTSSHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            8999999999987753

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=82.23  E-value=0.28  Score=37.32  Aligned_cols=17  Identities=24%  Similarity=0.517  Sum_probs=15.3

Q ss_pred             CCCCCCHHHHHHHHhCC
Q 024586            2 GKGGVGKSSTVNSIIGE   18 (265)
Q Consensus         2 G~tg~GKSSliN~llg~   18 (265)
                      |++||||||+...|...
T Consensus        10 GppGSGKgT~ak~La~~   26 (225)
T d1ckea_          10 GPSGAGKGTLCKAMAEA   26 (225)
T ss_dssp             CCTTSSHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHH
Confidence            99999999999888754

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=81.55  E-value=2.2  Score=33.04  Aligned_cols=53  Identities=21%  Similarity=0.290  Sum_probs=27.7

Q ss_pred             HHHHHHHhcCCccEEEEEEecCCcCCCHHH-HHHHHHHHHhcCcCcCCcEEEEEeCc
Q 024586           65 QLIKRFLLNKTIDVLLYVDRLDVYRVDNLD-KQITRAITDNFGEQIWKRALIVLTHA  120 (265)
Q Consensus        65 ~~i~~~l~~~~~d~iL~V~~~d~~r~~~~d-~~~l~~l~~~~g~~~~~~~ivV~tk~  120 (265)
                      ..++..+.....+.+++++-+... -+..| ..+...+.+.+.+.  .+..++.||-
T Consensus       103 ~~~~~il~~~~~~sLvliDE~~~g-T~~~eg~ala~aile~L~~~--~~~~i~tTH~  156 (224)
T d1ewqa2         103 EEVALILKEATENSLVLLDEVGRG-TSSLDGVAIATAVAEALHER--RAYTLFATHY  156 (224)
T ss_dssp             HHHHHHHHHCCTTEEEEEESTTTT-SCHHHHHHHHHHHHHHHHHH--TCEEEEECCC
T ss_pred             HHHHHHhccCCCCcEEeecccccC-cchhhhcchHHHHHHHHhhc--CcceEEeeec
Confidence            344545544566788888766532 22222 23333333333221  5677888886

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=80.46  E-value=5.6  Score=30.69  Aligned_cols=15  Identities=27%  Similarity=0.266  Sum_probs=13.1

Q ss_pred             CCCCCCHHHHHHHHh
Q 024586            2 GKGGVGKSSTVNSII   16 (265)
Q Consensus         2 G~tg~GKSSliN~ll   16 (265)
                      |+..+|||+++.++.
T Consensus        48 GpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          48 GPNMGGKSTYMRQTA   62 (234)
T ss_dssp             CCTTSSHHHHHHHHH
T ss_pred             ccCchhhHHHHHHHH
Confidence            899999999997764

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=80.16  E-value=0.26  Score=41.97  Aligned_cols=17  Identities=29%  Similarity=0.384  Sum_probs=14.8

Q ss_pred             CCCCCCCHHHHHHHHhC
Q 024586            1 MGKGGVGKSSTVNSIIG   17 (265)
Q Consensus         1 vG~tg~GKSSliN~llg   17 (265)
                      +|.||+|||++++.++-
T Consensus        56 ~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          56 NGATGTGKSVLLRELAY   72 (433)
T ss_dssp             EECTTSSHHHHHHHHHH
T ss_pred             EeCCCCcHHHHHHHHHH
Confidence            59999999999987774

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=80.07  E-value=0.15  Score=41.83  Aligned_cols=16  Identities=25%  Similarity=0.447  Sum_probs=11.2

Q ss_pred             CCCCCCHHHHHHHHhC
Q 024586            2 GKGGVGKSSTVNSIIG   17 (265)
Q Consensus         2 G~tg~GKSSliN~llg   17 (265)
                      |.+||||||+.++|..
T Consensus        11 G~SGSGKTTva~~l~~   26 (288)
T d1a7ja_          11 GSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             SCC---CCTHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHH
Confidence            8999999999998753